Query 015243
Match_columns 410
No_of_seqs 289 out of 2101
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:27:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015243.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015243hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01408 Ube1 ubiquitin-activ 100.0 3.6E-94 7.7E-99 788.2 30.9 408 2-410 409-886 (1008)
2 KOG2012 Ubiquitin activating e 100.0 4.6E-95 1E-99 746.0 18.2 408 2-410 420-892 (1013)
3 cd01490 Ube1_repeat2 Ubiquitin 100.0 2.8E-91 6.1E-96 702.6 30.8 334 14-410 1-357 (435)
4 KOG2013 SMT3/SUMO-activating c 100.0 1.1E-91 2.3E-96 686.9 22.0 395 1-409 1-415 (603)
5 cd01489 Uba2_SUMO Ubiquitin ac 100.0 4.9E-85 1.1E-89 635.5 28.9 288 14-410 1-288 (312)
6 cd01484 E1-2_like Ubiquitin ac 100.0 1.2E-69 2.6E-74 509.4 26.0 233 14-393 1-234 (234)
7 cd01488 Uba3_RUB Ubiquitin act 100.0 5.8E-66 1.3E-70 496.8 22.6 250 14-401 1-260 (291)
8 KOG2015 NEDD8-activating compl 100.0 2.6E-59 5.7E-64 439.8 22.1 259 3-398 31-301 (422)
9 PRK08223 hypothetical protein; 100.0 3.3E-38 7.2E-43 302.4 18.4 171 2-174 17-202 (287)
10 TIGR02356 adenyl_thiF thiazole 100.0 6.1E-38 1.3E-42 290.0 18.0 171 2-173 11-182 (202)
11 cd00757 ThiF_MoeB_HesA_family 100.0 7.5E-37 1.6E-41 287.9 20.3 168 2-170 11-179 (228)
12 PRK05690 molybdopterin biosynt 100.0 4.4E-37 9.5E-42 292.1 17.2 167 2-169 22-189 (245)
13 cd01491 Ube1_repeat1 Ubiquitin 100.0 6.9E-37 1.5E-41 294.7 16.4 177 1-183 8-184 (286)
14 PRK07411 hypothetical protein; 100.0 9.1E-37 2E-41 308.0 17.7 190 2-194 28-222 (390)
15 PRK05597 molybdopterin biosynt 100.0 3.1E-36 6.8E-41 300.7 19.1 191 2-194 18-212 (355)
16 TIGR02355 moeB molybdopterin s 100.0 6.1E-36 1.3E-40 283.2 18.1 157 2-159 14-171 (240)
17 PRK08328 hypothetical protein; 100.0 6.6E-36 1.4E-40 281.8 17.4 159 2-161 17-176 (231)
18 PRK07878 molybdopterin biosynt 100.0 2.2E-35 4.8E-40 298.4 18.6 170 2-172 32-207 (392)
19 PRK12475 thiamine/molybdopteri 100.0 6.9E-35 1.5E-39 288.8 18.1 170 2-172 14-185 (338)
20 PRK05600 thiamine biosynthesis 100.0 1.4E-34 3E-39 289.7 19.0 191 2-194 31-228 (370)
21 cd01492 Aos1_SUMO Ubiquitin ac 100.0 1E-34 2.2E-39 267.2 16.5 143 2-146 11-153 (197)
22 PRK07688 thiamine/molybdopteri 100.0 1.6E-34 3.6E-39 286.2 16.9 168 2-170 14-183 (339)
23 cd01485 E1-1_like Ubiquitin ac 100.0 3.5E-34 7.5E-39 264.0 16.7 146 1-146 8-156 (198)
24 TIGR01381 E1_like_apg7 E1-like 100.0 1.7E-33 3.7E-38 291.7 21.2 238 2-242 328-621 (664)
25 COG0476 ThiF Dinucleotide-util 100.0 2.9E-33 6.3E-38 267.8 17.8 161 2-163 20-181 (254)
26 PRK08762 molybdopterin biosynt 100.0 5.1E-33 1.1E-37 280.2 20.5 191 2-194 125-323 (376)
27 cd01486 Apg7 Apg7 is an E1-lik 100.0 6.1E-33 1.3E-37 266.0 19.6 227 14-242 1-287 (307)
28 cd01493 APPBP1_RUB Ubiquitin a 100.0 2.9E-31 6.3E-36 268.9 26.2 157 2-159 10-167 (425)
29 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 5.2E-32 1.1E-36 255.0 16.4 179 10-194 9-221 (244)
30 KOG2017 Molybdopterin synthase 100.0 5.1E-33 1.1E-37 264.7 8.9 167 2-169 56-224 (427)
31 cd00755 YgdL_like Family of ac 100.0 6.9E-32 1.5E-36 253.5 15.5 139 2-140 1-139 (231)
32 PF00899 ThiF: ThiF family; I 100.0 1.1E-31 2.3E-36 232.8 15.2 134 11-145 1-134 (135)
33 PRK14851 hypothetical protein; 100.0 1.1E-31 2.4E-36 285.6 17.4 158 2-161 33-192 (679)
34 PRK14852 hypothetical protein; 100.0 1.7E-31 3.7E-36 288.1 17.3 158 2-161 322-481 (989)
35 PRK08644 thiamine biosynthesis 100.0 8.2E-31 1.8E-35 243.8 17.3 153 2-156 18-173 (212)
36 cd01483 E1_enzyme_family Super 100.0 2.1E-30 4.5E-35 226.8 15.2 133 14-147 1-133 (143)
37 PRK15116 sulfur acceptor prote 100.0 1.4E-29 3.1E-34 241.8 15.4 137 2-138 20-156 (268)
38 PRK07877 hypothetical protein; 100.0 1.7E-29 3.7E-34 269.5 16.2 154 2-160 97-254 (722)
39 cd01487 E1_ThiF_like E1_ThiF_l 100.0 3.9E-29 8.5E-34 225.8 15.9 142 14-157 1-145 (174)
40 TIGR01408 Ube1 ubiquitin-activ 100.0 2.8E-29 6E-34 276.6 16.4 150 1-155 13-164 (1008)
41 COG1179 Dinucleotide-utilizing 100.0 1E-28 2.2E-33 226.8 12.1 137 2-138 20-156 (263)
42 TIGR02354 thiF_fam2 thiamine b 100.0 7.7E-28 1.7E-32 221.9 16.9 153 2-158 11-169 (200)
43 TIGR03603 cyclo_dehy_ocin bact 99.9 7.6E-28 1.6E-32 236.4 12.9 140 4-159 68-209 (318)
44 PRK06153 hypothetical protein; 99.9 1.3E-26 2.8E-31 228.9 14.6 149 4-161 168-319 (393)
45 PF02134 UBACT: Repeat in ubiq 99.9 5.3E-26 1.1E-30 172.5 7.4 67 333-399 1-67 (67)
46 KOG2336 Molybdopterin biosynth 99.9 3.4E-25 7.3E-30 205.9 11.6 154 5-159 75-241 (422)
47 KOG2014 SMT3/SUMO-activating c 99.9 1E-23 2.3E-28 198.3 12.4 147 2-150 21-167 (331)
48 KOG2012 Ubiquitin activating e 99.9 7.2E-24 1.6E-28 220.3 8.6 182 2-190 27-208 (1013)
49 PTZ00245 ubiquitin activating 99.9 2.8E-23 6.1E-28 192.8 11.6 105 2-114 16-120 (287)
50 KOG2018 Predicted dinucleotide 99.9 4.5E-22 9.7E-27 187.8 10.3 137 2-138 64-200 (430)
51 KOG2337 Ubiquitin activating E 99.9 1.1E-20 2.4E-25 188.2 17.0 234 3-238 331-625 (669)
52 KOG2016 NEDD8-activating compl 99.8 1.3E-20 2.7E-25 185.0 8.5 149 2-150 17-166 (523)
53 TIGR03693 ocin_ThiF_like putat 99.6 7.5E-15 1.6E-19 152.0 11.5 137 3-157 120-261 (637)
54 PF10585 UBA_e1_thiolCys: Ubiq 99.5 7.8E-15 1.7E-19 101.9 2.1 45 149-194 1-45 (45)
55 COG4015 Predicted dinucleotide 98.3 5.4E-06 1.2E-10 72.5 9.7 117 12-134 18-140 (217)
56 cd01490 Ube1_repeat2 Ubiquitin 98.1 5.1E-06 1.1E-10 85.0 6.5 36 328-363 244-279 (435)
57 TIGR03882 cyclo_dehyd_2 bacter 98.0 2E-05 4.3E-10 72.5 8.6 96 3-157 96-193 (193)
58 COG1748 LYS9 Saccharopine dehy 98.0 3.6E-05 7.7E-10 77.6 10.1 101 13-138 2-102 (389)
59 PRK06718 precorrin-2 dehydroge 97.9 0.00016 3.4E-09 67.0 11.3 94 9-134 7-100 (202)
60 PRK12549 shikimate 5-dehydroge 97.9 6E-05 1.3E-09 73.5 8.9 77 10-112 125-201 (284)
61 PF01488 Shikimate_DH: Shikima 97.8 9E-05 2E-09 64.1 8.3 79 8-114 8-86 (135)
62 TIGR01470 cysG_Nterm siroheme 97.6 0.00085 1.9E-08 62.3 12.3 97 10-137 7-103 (205)
63 PF13241 NAD_binding_7: Putati 97.6 0.00027 5.8E-09 58.2 7.6 89 9-135 4-92 (103)
64 PRK06719 precorrin-2 dehydroge 97.4 0.0016 3.5E-08 57.8 10.9 85 9-127 10-94 (157)
65 PF03435 Saccharop_dh: Sacchar 97.4 0.00063 1.4E-08 69.0 8.8 96 15-134 1-97 (386)
66 PRK05562 precorrin-2 dehydroge 97.3 0.0026 5.6E-08 59.7 11.6 96 10-136 23-118 (223)
67 PRK12548 shikimate 5-dehydroge 97.0 0.0034 7.4E-08 61.3 9.0 84 10-111 124-207 (289)
68 PRK14027 quinate/shikimate deh 96.9 0.0035 7.5E-08 61.1 8.4 79 10-112 125-203 (283)
69 COG0373 HemA Glutamyl-tRNA red 96.9 0.0017 3.7E-08 66.0 6.1 76 9-115 175-250 (414)
70 TIGR01809 Shik-DH-AROM shikima 96.8 0.0034 7.4E-08 61.1 7.3 77 10-112 123-199 (282)
71 COG0569 TrkA K+ transport syst 96.8 0.012 2.6E-07 55.3 10.5 99 13-137 1-101 (225)
72 PRK07066 3-hydroxybutyryl-CoA 96.7 0.015 3.2E-07 57.7 11.2 165 13-194 8-176 (321)
73 PRK12749 quinate/shikimate deh 96.7 0.0066 1.4E-07 59.3 8.3 83 10-111 122-204 (288)
74 PRK13940 glutamyl-tRNA reducta 96.6 0.0036 7.8E-08 64.2 6.5 77 9-115 178-254 (414)
75 PRK07819 3-hydroxybutyryl-CoA 96.6 0.011 2.3E-07 57.7 8.9 165 13-194 6-179 (286)
76 PRK00258 aroE shikimate 5-dehy 96.5 0.011 2.4E-07 57.4 8.4 74 10-112 121-194 (278)
77 COG1648 CysG Siroheme synthase 96.5 0.011 2.4E-07 55.1 7.9 98 9-137 9-106 (210)
78 COG0169 AroE Shikimate 5-dehyd 96.4 0.012 2.6E-07 57.2 8.4 75 11-112 125-199 (283)
79 PRK04148 hypothetical protein; 96.4 0.043 9.3E-07 47.3 10.8 96 11-137 16-111 (134)
80 PRK14106 murD UDP-N-acetylmura 96.4 0.016 3.5E-07 59.9 9.8 95 10-133 3-97 (450)
81 PRK08293 3-hydroxybutyryl-CoA 96.4 0.012 2.7E-07 57.2 8.4 32 13-45 4-35 (287)
82 PRK06130 3-hydroxybutyryl-CoA 96.3 0.033 7.2E-07 54.7 11.0 32 13-45 5-36 (311)
83 cd05213 NAD_bind_Glutamyl_tRNA 96.3 0.019 4.1E-07 56.7 9.0 83 10-123 176-258 (311)
84 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.011 2.4E-07 53.1 6.4 35 9-44 41-76 (168)
85 PRK10637 cysG siroheme synthas 96.2 0.044 9.5E-07 57.1 11.6 96 9-135 9-104 (457)
86 cd05291 HicDH_like L-2-hydroxy 96.1 0.025 5.4E-07 55.7 8.7 73 13-113 1-78 (306)
87 PRK05808 3-hydroxybutyryl-CoA 96.1 0.052 1.1E-06 52.6 10.7 157 13-191 4-173 (282)
88 COG1086 Predicted nucleoside-d 96.1 0.032 7E-07 58.5 9.5 88 5-111 243-333 (588)
89 PF02737 3HCDH_N: 3-hydroxyacy 96.0 0.0087 1.9E-07 54.3 4.7 163 14-192 1-170 (180)
90 KOG4169 15-hydroxyprostaglandi 95.9 0.022 4.8E-07 53.2 6.8 114 10-144 3-133 (261)
91 PRK11880 pyrroline-5-carboxyla 95.8 0.11 2.3E-06 49.8 11.6 88 13-133 3-92 (267)
92 cd05311 NAD_bind_2_malic_enz N 95.8 0.012 2.6E-07 55.5 4.8 37 9-45 22-60 (226)
93 PF01118 Semialdhyde_dh: Semia 95.8 0.07 1.5E-06 44.9 9.0 95 14-135 1-97 (121)
94 PRK00066 ldh L-lactate dehydro 95.7 0.049 1.1E-06 53.9 9.0 75 12-112 6-82 (315)
95 PLN02819 lysine-ketoglutarate 95.7 0.047 1E-06 61.8 9.8 99 11-135 568-679 (1042)
96 cd01078 NAD_bind_H4MPT_DH NADP 95.7 0.038 8.2E-07 50.5 7.5 82 9-113 25-107 (194)
97 PF00056 Ldh_1_N: lactate/mala 95.7 0.049 1.1E-06 47.4 7.7 75 13-113 1-79 (141)
98 PLN02545 3-hydroxybutyryl-CoA 95.6 0.17 3.7E-06 49.3 12.3 33 13-46 5-37 (295)
99 PF02719 Polysacc_synt_2: Poly 95.6 0.023 5.1E-07 55.3 5.9 78 15-111 1-85 (293)
100 cd01065 NAD_bind_Shikimate_DH 95.6 0.14 3.1E-06 44.5 10.4 35 10-44 17-51 (155)
101 PRK06035 3-hydroxyacyl-CoA deh 95.5 0.13 2.8E-06 50.1 11.0 33 13-46 4-36 (291)
102 PF00070 Pyr_redox: Pyridine n 95.5 0.026 5.6E-07 43.8 4.9 54 14-79 1-54 (80)
103 cd05290 LDH_3 A subgroup of L- 95.5 0.063 1.4E-06 52.9 8.7 72 14-113 1-78 (307)
104 PTZ00082 L-lactate dehydrogena 95.5 0.063 1.4E-06 53.3 8.8 35 10-44 4-38 (321)
105 PF01113 DapB_N: Dihydrodipico 95.5 0.094 2E-06 44.5 8.7 98 14-139 2-101 (124)
106 PLN00203 glutamyl-tRNA reducta 95.4 0.04 8.7E-07 58.1 7.4 78 10-115 264-341 (519)
107 cd05312 NAD_bind_1_malic_enz N 95.4 0.15 3.1E-06 49.5 10.6 106 8-136 21-140 (279)
108 PRK07531 bifunctional 3-hydrox 95.3 0.25 5.4E-06 52.0 12.9 164 13-192 5-172 (495)
109 PF03949 Malic_M: Malic enzyme 95.3 0.11 2.5E-06 49.6 9.2 107 8-136 21-141 (255)
110 PF01210 NAD_Gly3P_dh_N: NAD-d 95.2 0.074 1.6E-06 47.0 7.5 97 14-133 1-101 (157)
111 PF03446 NAD_binding_2: NAD bi 95.2 0.019 4.1E-07 51.1 3.5 115 13-139 2-123 (163)
112 PRK09260 3-hydroxybutyryl-CoA 95.1 0.015 3.2E-07 56.7 2.9 33 13-46 2-34 (288)
113 PRK14619 NAD(P)H-dependent gly 95.0 0.12 2.7E-06 50.7 9.2 75 12-134 4-81 (308)
114 PRK07530 3-hydroxybutyryl-CoA 95.0 0.21 4.6E-06 48.6 10.7 33 12-45 4-36 (292)
115 PF03807 F420_oxidored: NADP o 94.9 0.074 1.6E-06 42.4 6.0 89 14-134 1-93 (96)
116 PRK09496 trkA potassium transp 94.9 0.2 4.4E-06 51.6 10.7 95 13-134 1-97 (453)
117 PRK07063 short chain dehydroge 94.9 0.14 3E-06 48.5 8.7 65 9-93 4-69 (260)
118 PRK05476 S-adenosyl-L-homocyst 94.8 0.13 2.7E-06 53.0 8.7 36 10-46 210-245 (425)
119 PRK14192 bifunctional 5,10-met 94.8 0.071 1.5E-06 52.0 6.6 34 9-43 156-190 (283)
120 cd05293 LDH_1 A subgroup of L- 94.8 0.14 3E-06 50.7 8.7 74 12-112 3-80 (312)
121 PLN02602 lactate dehydrogenase 94.8 0.11 2.5E-06 52.1 8.2 74 13-113 38-115 (350)
122 PRK05854 short chain dehydroge 94.7 0.15 3.2E-06 50.2 8.6 64 9-92 11-75 (313)
123 PRK13403 ketol-acid reductoiso 94.7 0.13 2.8E-06 50.9 8.0 81 6-122 10-90 (335)
124 cd00762 NAD_bind_malic_enz NAD 94.7 0.2 4.4E-06 47.8 9.1 107 8-136 21-141 (254)
125 cd05191 NAD_bind_amino_acid_DH 94.6 0.06 1.3E-06 42.5 4.6 36 10-45 21-56 (86)
126 PRK01438 murD UDP-N-acetylmura 94.6 0.18 4E-06 52.6 9.6 35 10-45 14-48 (480)
127 TIGR03589 PseB UDP-N-acetylglu 94.6 0.42 9E-06 47.2 11.6 79 10-111 2-82 (324)
128 PRK06197 short chain dehydroge 94.5 0.17 3.7E-06 49.3 8.8 36 8-44 12-48 (306)
129 PRK09242 tropinone reductase; 94.5 0.17 3.8E-06 47.6 8.5 83 9-111 6-96 (257)
130 PLN03209 translocon at the inn 94.4 0.42 9.1E-06 51.0 11.7 83 10-112 78-168 (576)
131 cd05296 GH4_P_beta_glucosidase 94.4 0.19 4.1E-06 51.8 8.9 108 13-143 1-115 (419)
132 PLN02427 UDP-apiose/xylose syn 94.4 0.23 5E-06 50.2 9.5 114 9-142 11-142 (386)
133 PLN02240 UDP-glucose 4-epimera 94.3 0.4 8.6E-06 47.4 11.0 33 10-43 3-36 (352)
134 PRK11908 NAD-dependent epimera 94.3 0.47 1E-05 47.1 11.5 103 13-141 2-123 (347)
135 cd00300 LDH_like L-lactate deh 94.3 0.2 4.2E-06 49.3 8.4 72 15-113 1-76 (300)
136 PRK08618 ornithine cyclodeamin 94.3 0.22 4.9E-06 49.4 9.0 77 11-114 126-203 (325)
137 PRK08251 short chain dehydroge 94.2 0.3 6.6E-06 45.6 9.5 62 12-93 2-64 (248)
138 COG1893 ApbA Ketopantoate redu 94.2 0.26 5.6E-06 48.7 9.1 87 13-126 1-90 (307)
139 PRK06141 ornithine cyclodeamin 94.2 0.17 3.6E-06 50.1 7.8 77 9-113 122-199 (314)
140 PRK00048 dihydrodipicolinate r 94.1 0.52 1.1E-05 45.2 10.8 92 13-140 2-95 (257)
141 PF13460 NAD_binding_10: NADH( 94.1 0.51 1.1E-05 41.9 10.2 94 15-138 1-100 (183)
142 PRK12826 3-ketoacyl-(acyl-carr 94.1 0.25 5.5E-06 45.9 8.5 36 9-45 3-39 (251)
143 PRK06129 3-hydroxyacyl-CoA deh 94.0 0.61 1.3E-05 45.8 11.4 33 13-46 3-35 (308)
144 PTZ00431 pyrroline carboxylate 94.0 0.43 9.3E-06 45.8 10.1 74 11-124 2-78 (260)
145 PRK07634 pyrroline-5-carboxyla 94.0 0.34 7.3E-06 45.7 9.3 82 11-124 3-87 (245)
146 PRK07831 short chain dehydroge 94.0 0.28 6.1E-06 46.4 8.7 34 9-43 14-49 (262)
147 TIGR00507 aroE shikimate 5-deh 94.0 0.48 1E-05 45.6 10.4 32 11-43 116-147 (270)
148 PRK09599 6-phosphogluconate de 94.0 0.15 3.2E-06 50.0 6.9 117 14-139 2-123 (301)
149 PRK07679 pyrroline-5-carboxyla 93.9 0.23 4.9E-06 48.1 8.1 92 11-134 2-98 (279)
150 PRK06522 2-dehydropantoate 2-r 93.9 0.54 1.2E-05 45.6 10.7 32 13-45 1-32 (304)
151 PRK12491 pyrroline-5-carboxyla 93.9 0.68 1.5E-05 44.8 11.3 80 12-124 2-84 (272)
152 PRK14982 acyl-ACP reductase; P 93.9 0.3 6.5E-06 48.8 8.8 36 9-44 152-189 (340)
153 PRK11730 fadB multifunctional 93.8 0.17 3.8E-06 55.6 7.8 163 13-192 314-484 (715)
154 PF02254 TrkA_N: TrkA-N domain 93.8 0.63 1.4E-05 38.3 9.5 91 15-133 1-93 (116)
155 PRK11154 fadJ multifunctional 93.8 0.16 3.5E-06 55.8 7.4 160 13-191 310-480 (708)
156 PRK05875 short chain dehydroge 93.8 0.36 7.8E-06 46.0 9.1 35 9-44 4-39 (276)
157 PRK07523 gluconate 5-dehydroge 93.7 0.33 7.2E-06 45.7 8.6 35 9-44 7-42 (255)
158 PRK07062 short chain dehydroge 93.7 0.3 6.5E-06 46.2 8.4 82 10-111 6-95 (265)
159 PRK09496 trkA potassium transp 93.7 0.44 9.4E-06 49.2 10.2 94 11-130 230-324 (453)
160 PRK07502 cyclohexadienyl dehyd 93.7 0.35 7.5E-06 47.5 9.0 33 12-44 6-39 (307)
161 cd05298 GH4_GlvA_pagL_like Gly 93.6 0.4 8.6E-06 49.7 9.6 108 13-144 1-115 (437)
162 PRK08655 prephenate dehydrogen 93.6 0.29 6.4E-06 50.7 8.7 90 13-136 1-93 (437)
163 PRK07417 arogenate dehydrogena 93.6 0.55 1.2E-05 45.5 10.1 31 14-45 2-32 (279)
164 PF02826 2-Hacid_dh_C: D-isome 93.6 0.1 2.3E-06 47.0 4.8 37 8-45 32-68 (178)
165 PRK07576 short chain dehydroge 93.6 0.2 4.4E-06 47.7 7.0 38 7-45 4-42 (264)
166 TIGR02992 ectoine_eutC ectoine 93.6 0.32 6.9E-06 48.3 8.6 75 12-113 129-204 (326)
167 PLN02688 pyrroline-5-carboxyla 93.6 0.53 1.1E-05 45.0 9.9 79 13-124 1-82 (266)
168 PRK01710 murD UDP-N-acetylmura 93.5 0.55 1.2E-05 48.9 10.6 41 5-46 7-47 (458)
169 PRK03562 glutathione-regulated 93.5 0.31 6.6E-06 52.9 9.0 88 12-127 400-488 (621)
170 PRK00094 gpsA NAD(P)H-dependen 93.5 0.26 5.7E-06 48.4 7.9 32 13-45 2-33 (325)
171 PRK15181 Vi polysaccharide bio 93.5 0.47 1E-05 47.3 9.7 117 9-142 12-147 (348)
172 COG1250 FadB 3-hydroxyacyl-CoA 93.5 0.26 5.6E-06 48.5 7.5 107 13-139 4-121 (307)
173 PTZ00345 glycerol-3-phosphate 93.5 0.25 5.5E-06 49.9 7.7 96 11-124 10-114 (365)
174 PRK06223 malate dehydrogenase; 93.5 0.35 7.7E-06 47.4 8.6 32 13-44 3-34 (307)
175 TIGR00872 gnd_rel 6-phosphoglu 93.4 0.17 3.7E-06 49.5 6.3 32 14-46 2-33 (298)
176 PRK07231 fabG 3-ketoacyl-(acyl 93.4 0.28 6E-06 45.8 7.5 35 10-45 3-38 (251)
177 TIGR02622 CDP_4_6_dhtase CDP-g 93.4 0.65 1.4E-05 46.1 10.6 35 10-45 2-37 (349)
178 PRK07340 ornithine cyclodeamin 93.4 0.28 6E-06 48.3 7.7 76 9-113 122-198 (304)
179 PRK15469 ghrA bifunctional gly 93.3 0.54 1.2E-05 46.5 9.7 90 9-135 133-226 (312)
180 PRK06194 hypothetical protein; 93.2 0.43 9.2E-06 45.8 8.6 34 10-44 4-38 (287)
181 PRK07680 late competence prote 93.2 0.55 1.2E-05 45.2 9.4 89 14-134 2-95 (273)
182 PTZ00325 malate dehydrogenase; 93.2 0.24 5.2E-06 49.2 6.9 35 10-44 6-42 (321)
183 TIGR03466 HpnA hopanoid-associ 93.2 0.5 1.1E-05 45.9 9.2 32 13-45 1-33 (328)
184 COG1063 Tdh Threonine dehydrog 93.2 0.27 5.8E-06 49.3 7.3 93 13-129 170-264 (350)
185 PRK05867 short chain dehydroge 93.1 0.48 1E-05 44.6 8.7 33 10-43 7-40 (253)
186 PRK05866 short chain dehydroge 93.1 0.47 1E-05 46.1 8.8 35 9-44 37-72 (293)
187 PTZ00117 malate dehydrogenase; 93.1 0.13 2.8E-06 51.1 4.8 36 10-45 3-38 (319)
188 COG0240 GpsA Glycerol-3-phosph 93.0 0.59 1.3E-05 46.3 9.2 99 13-134 2-104 (329)
189 PRK09987 dTDP-4-dehydrorhamnos 93.0 0.38 8.3E-06 46.9 8.0 104 13-140 1-108 (299)
190 TIGR01035 hemA glutamyl-tRNA r 93.0 0.13 2.8E-06 53.0 4.8 36 9-44 177-212 (417)
191 PRK08229 2-dehydropantoate 2-r 93.0 0.67 1.5E-05 46.0 9.9 32 13-45 3-34 (341)
192 TIGR01181 dTDP_gluc_dehyt dTDP 92.9 0.97 2.1E-05 43.5 10.7 31 14-44 1-33 (317)
193 cd01075 NAD_bind_Leu_Phe_Val_D 92.9 0.14 3.1E-06 47.2 4.6 35 10-45 26-60 (200)
194 KOG0024 Sorbitol dehydrogenase 92.9 0.48 1E-05 46.7 8.2 34 12-45 170-203 (354)
195 TIGR02440 FadJ fatty oxidation 92.9 0.29 6.3E-06 53.8 7.6 157 13-191 305-475 (699)
196 PRK06476 pyrroline-5-carboxyla 92.8 0.35 7.6E-06 46.2 7.3 88 14-133 2-91 (258)
197 TIGR01915 npdG NADPH-dependent 92.8 1.1 2.3E-05 41.8 10.3 83 13-123 1-88 (219)
198 PRK08217 fabG 3-ketoacyl-(acyl 92.7 0.5 1.1E-05 44.0 8.2 34 10-44 3-37 (253)
199 PTZ00142 6-phosphogluconate de 92.7 0.26 5.5E-06 51.6 6.6 122 13-139 2-130 (470)
200 PLN02206 UDP-glucuronate decar 92.6 0.95 2E-05 47.0 10.7 103 11-141 118-238 (442)
201 PRK08291 ectoine utilization p 92.6 0.57 1.2E-05 46.6 8.8 75 12-113 132-207 (330)
202 PF00106 adh_short: short chai 92.6 0.51 1.1E-05 41.0 7.6 79 13-110 1-87 (167)
203 TIGR02437 FadB fatty oxidation 92.6 0.38 8.2E-06 53.0 8.1 158 13-186 314-479 (714)
204 TIGR02279 PaaC-3OHAcCoADH 3-hy 92.6 0.41 8.8E-06 50.5 8.0 33 12-45 5-37 (503)
205 PRK08339 short chain dehydroge 92.5 0.65 1.4E-05 44.2 8.7 34 10-44 6-40 (263)
206 PLN02350 phosphogluconate dehy 92.5 0.83 1.8E-05 48.0 10.0 122 13-139 7-136 (493)
207 PRK12384 sorbitol-6-phosphate 92.5 0.66 1.4E-05 43.7 8.7 33 12-45 2-35 (259)
208 PRK10217 dTDP-glucose 4,6-dehy 92.4 1.1 2.4E-05 44.4 10.7 32 13-44 2-34 (355)
209 PRK13304 L-aspartate dehydroge 92.4 1.1 2.4E-05 43.1 10.2 89 13-135 2-92 (265)
210 PRK03659 glutathione-regulated 92.4 0.51 1.1E-05 50.9 8.7 89 12-128 400-489 (601)
211 PRK12550 shikimate 5-dehydroge 92.4 0.2 4.4E-06 48.5 5.0 32 12-43 122-153 (272)
212 PRK05708 2-dehydropantoate 2-r 92.4 0.17 3.8E-06 49.7 4.6 33 12-45 2-34 (305)
213 cd05211 NAD_bind_Glu_Leu_Phe_V 92.3 0.18 3.9E-06 47.2 4.5 38 9-46 20-57 (217)
214 PF10727 Rossmann-like: Rossma 92.3 0.21 4.5E-06 42.7 4.5 84 10-126 8-91 (127)
215 PRK05565 fabG 3-ketoacyl-(acyl 92.3 0.63 1.4E-05 43.1 8.2 32 10-42 3-35 (247)
216 TIGR00873 gnd 6-phosphoglucona 92.3 0.34 7.4E-06 50.6 6.9 122 14-139 1-127 (467)
217 PRK00676 hemA glutamyl-tRNA re 92.3 0.17 3.7E-06 50.4 4.5 35 9-43 171-205 (338)
218 PRK09186 flagellin modificatio 92.3 0.65 1.4E-05 43.5 8.3 33 10-43 2-35 (256)
219 TIGR01757 Malate-DH_plant mala 92.2 0.79 1.7E-05 46.7 9.2 86 4-113 32-130 (387)
220 PRK06181 short chain dehydroge 92.2 0.84 1.8E-05 43.0 9.1 31 13-44 2-33 (263)
221 PLN02253 xanthoxin dehydrogena 92.2 0.56 1.2E-05 44.8 7.9 35 9-44 15-50 (280)
222 COG0300 DltE Short-chain dehyd 92.2 0.85 1.8E-05 44.0 9.0 64 10-94 4-68 (265)
223 PRK07478 short chain dehydroge 92.2 0.73 1.6E-05 43.3 8.6 34 10-44 4-38 (254)
224 PRK06928 pyrroline-5-carboxyla 92.1 1.4 2.9E-05 42.8 10.5 90 13-133 2-96 (277)
225 PLN02653 GDP-mannose 4,6-dehyd 92.1 0.73 1.6E-05 45.5 8.9 34 10-44 4-38 (340)
226 PLN02520 bifunctional 3-dehydr 92.1 0.34 7.5E-06 51.4 6.8 33 10-43 377-409 (529)
227 TIGR01832 kduD 2-deoxy-D-gluco 92.1 0.64 1.4E-05 43.4 8.0 33 10-43 3-36 (248)
228 TIGR03376 glycerol3P_DH glycer 92.0 0.76 1.6E-05 46.1 8.8 99 14-134 1-115 (342)
229 PRK00045 hemA glutamyl-tRNA re 92.0 0.2 4.4E-06 51.6 4.9 35 10-44 180-214 (423)
230 TIGR01202 bchC 2-desacetyl-2-h 92.0 0.66 1.4E-05 45.4 8.3 34 11-44 144-177 (308)
231 PRK07814 short chain dehydroge 92.0 0.84 1.8E-05 43.3 8.8 35 10-45 8-43 (263)
232 TIGR01759 MalateDH-SF1 malate 91.9 0.48 1E-05 47.1 7.2 31 13-43 4-41 (323)
233 TIGR02853 spore_dpaA dipicolin 91.9 0.22 4.8E-06 48.6 4.7 35 9-44 148-182 (287)
234 cd01337 MDH_glyoxysomal_mitoch 91.8 0.41 9E-06 47.3 6.6 33 13-45 1-35 (310)
235 cd01339 LDH-like_MDH L-lactate 91.8 0.68 1.5E-05 45.3 8.1 31 15-45 1-31 (300)
236 PRK04308 murD UDP-N-acetylmura 91.8 1 2.2E-05 46.5 9.9 35 10-45 3-37 (445)
237 PRK12939 short chain dehydroge 91.8 0.96 2.1E-05 42.0 8.9 33 10-43 5-38 (250)
238 PRK12769 putative oxidoreducta 91.8 0.83 1.8E-05 49.8 9.5 34 11-45 326-359 (654)
239 PRK06940 short chain dehydroge 91.8 0.8 1.7E-05 44.0 8.4 31 12-44 2-32 (275)
240 PRK06138 short chain dehydroge 91.8 0.79 1.7E-05 42.7 8.2 33 10-43 3-36 (252)
241 PRK08277 D-mannonate oxidoredu 91.8 0.99 2.1E-05 43.0 9.1 35 9-44 7-42 (278)
242 TIGR03026 NDP-sugDHase nucleot 91.7 1.1 2.4E-05 45.9 9.9 41 14-55 2-42 (411)
243 PRK14175 bifunctional 5,10-met 91.7 0.47 1E-05 46.3 6.7 77 9-137 155-232 (286)
244 PLN02695 GDP-D-mannose-3',5'-e 91.7 1.1 2.5E-05 45.1 9.8 33 11-44 20-53 (370)
245 PRK12490 6-phosphogluconate de 91.7 0.45 9.8E-06 46.6 6.7 31 14-45 2-32 (299)
246 TIGR02441 fa_ox_alpha_mit fatt 91.7 0.39 8.5E-06 53.0 6.9 163 13-191 336-505 (737)
247 PRK07453 protochlorophyllide o 91.7 0.72 1.6E-05 45.3 8.2 34 10-44 4-38 (322)
248 KOG0069 Glyoxylate/hydroxypyru 91.6 0.61 1.3E-05 46.4 7.4 92 8-135 158-253 (336)
249 PRK07666 fabG 3-ketoacyl-(acyl 91.6 0.95 2E-05 42.0 8.5 36 9-45 4-40 (239)
250 PRK06567 putative bifunctional 91.6 0.5 1.1E-05 53.3 7.5 40 11-51 382-421 (1028)
251 PRK06172 short chain dehydroge 91.5 0.74 1.6E-05 43.1 7.8 34 10-44 5-39 (253)
252 PRK12439 NAD(P)H-dependent gly 91.5 1.1 2.3E-05 44.9 9.3 102 12-134 7-110 (341)
253 PRK13394 3-hydroxybutyrate deh 91.5 0.91 2E-05 42.6 8.4 34 10-44 5-39 (262)
254 PRK12829 short chain dehydroge 91.5 0.59 1.3E-05 44.0 7.1 36 7-43 6-42 (264)
255 PRK11199 tyrA bifunctional cho 91.5 0.66 1.4E-05 47.1 7.8 32 13-45 99-131 (374)
256 PRK05876 short chain dehydroge 91.5 0.8 1.7E-05 44.0 8.1 34 10-44 4-38 (275)
257 PRK02006 murD UDP-N-acetylmura 91.5 0.86 1.9E-05 47.9 9.0 35 10-45 5-39 (498)
258 PLN00141 Tic62-NAD(P)-related 91.4 1.8 3.8E-05 40.9 10.3 37 4-41 9-46 (251)
259 PLN02852 ferredoxin-NADP+ redu 91.4 1.1 2.4E-05 47.1 9.6 97 11-114 25-125 (491)
260 TIGR01316 gltA glutamate synth 91.3 1.6 3.5E-05 45.3 10.7 34 11-45 132-165 (449)
261 PRK08125 bifunctional UDP-gluc 91.3 1.8 4E-05 47.2 11.6 108 8-141 311-437 (660)
262 PLN02214 cinnamoyl-CoA reducta 91.3 2.4 5.3E-05 42.1 11.6 107 10-137 8-128 (342)
263 CHL00194 ycf39 Ycf39; Provisio 91.3 1.3 2.9E-05 43.3 9.6 97 13-137 1-111 (317)
264 TIGR00065 ftsZ cell division p 91.3 1.1 2.3E-05 45.1 8.9 44 5-48 10-55 (349)
265 PRK10675 UDP-galactose-4-epime 91.3 2.3 4.9E-05 41.8 11.3 30 13-43 1-31 (338)
266 PRK09880 L-idonate 5-dehydroge 91.2 1 2.3E-05 44.5 8.9 34 11-44 169-202 (343)
267 PRK07326 short chain dehydroge 91.2 0.92 2E-05 41.9 8.0 33 10-43 4-37 (237)
268 PLN02657 3,8-divinyl protochlo 91.2 1.5 3.3E-05 44.6 10.2 33 11-44 59-92 (390)
269 TIGR01505 tartro_sem_red 2-hyd 91.1 1.1 2.3E-05 43.6 8.6 31 14-45 1-31 (291)
270 PRK07024 short chain dehydroge 91.1 0.85 1.8E-05 43.0 7.8 33 12-45 2-35 (257)
271 PLN02650 dihydroflavonol-4-red 91.1 2.8 6E-05 41.6 11.9 33 11-44 4-37 (351)
272 TIGR01472 gmd GDP-mannose 4,6- 91.1 1.5 3.3E-05 43.3 10.0 31 13-44 1-32 (343)
273 PRK13018 cell division protein 91.1 1.4 3.1E-05 44.6 9.7 38 10-47 26-65 (378)
274 TIGR01850 argC N-acetyl-gamma- 91.0 1.1 2.4E-05 45.0 8.7 98 13-136 1-100 (346)
275 PLN02166 dTDP-glucose 4,6-dehy 91.0 1.7 3.8E-05 44.9 10.5 103 11-141 119-239 (436)
276 PRK06949 short chain dehydroge 91.0 1.3 2.8E-05 41.5 8.8 34 10-44 7-41 (258)
277 cd00650 LDH_MDH_like NAD-depen 90.9 1 2.2E-05 43.2 8.1 32 15-46 1-36 (263)
278 PRK05335 tRNA (uracil-5-)-meth 90.9 0.33 7.1E-06 50.0 4.9 34 12-46 2-35 (436)
279 PRK07035 short chain dehydroge 90.9 1.5 3.2E-05 41.1 9.1 36 9-45 5-41 (252)
280 PLN02572 UDP-sulfoquinovose sy 90.9 2.8 6.2E-05 43.4 12.0 35 9-44 44-79 (442)
281 PF01408 GFO_IDH_MocA: Oxidore 90.9 3.2 6.9E-05 34.1 10.2 86 14-133 2-91 (120)
282 PRK06545 prephenate dehydrogen 90.8 1.5 3.2E-05 44.2 9.6 32 13-45 1-32 (359)
283 COG1062 AdhC Zn-dependent alco 90.8 1.4 3.1E-05 43.7 9.0 95 12-130 186-281 (366)
284 PRK12429 3-hydroxybutyrate deh 90.7 1.4 3E-05 41.1 8.9 33 10-43 2-35 (258)
285 PLN02896 cinnamyl-alcohol dehy 90.7 2.9 6.3E-05 41.5 11.6 32 11-43 9-41 (353)
286 cd01076 NAD_bind_1_Glu_DH NAD( 90.7 1.8 3.9E-05 40.7 9.5 37 9-45 28-64 (227)
287 COG1712 Predicted dinucleotide 90.7 1.6 3.5E-05 40.9 8.7 30 13-43 1-33 (255)
288 cd05197 GH4_glycoside_hydrolas 90.6 1.6 3.4E-05 45.2 9.6 109 13-145 1-116 (425)
289 PRK05872 short chain dehydroge 90.5 1.4 3E-05 42.8 8.9 35 9-44 6-41 (296)
290 KOG1205 Predicted dehydrogenas 90.5 1.5 3.2E-05 42.7 8.8 88 3-110 3-98 (282)
291 PRK15461 NADH-dependent gamma- 90.5 1.2 2.7E-05 43.4 8.5 32 13-45 2-33 (296)
292 PRK12744 short chain dehydroge 90.5 1.4 3E-05 41.5 8.6 33 9-41 5-38 (257)
293 PLN02968 Probable N-acetyl-gam 90.5 0.89 1.9E-05 46.3 7.6 99 11-137 37-136 (381)
294 TIGR01318 gltD_gamma_fam gluta 90.5 1.6 3.4E-05 45.6 9.7 34 11-45 140-173 (467)
295 PRK06249 2-dehydropantoate 2-r 90.4 0.37 8.1E-06 47.4 4.7 34 12-46 5-38 (313)
296 PRK13302 putative L-aspartate 90.3 1.9 4.1E-05 41.7 9.4 90 11-133 5-96 (271)
297 cd08230 glucose_DH Glucose deh 90.3 1.5 3.3E-05 43.6 9.1 33 11-44 172-204 (355)
298 PRK08213 gluconate 5-dehydroge 90.3 1.5 3.3E-05 41.2 8.7 36 8-44 8-44 (259)
299 PRK02472 murD UDP-N-acetylmura 90.3 1.6 3.6E-05 44.9 9.6 35 10-45 3-37 (447)
300 PRK08265 short chain dehydroge 90.2 0.79 1.7E-05 43.4 6.7 36 9-45 3-39 (261)
301 PRK12771 putative glutamate sy 90.2 0.94 2E-05 48.4 7.9 34 11-45 136-169 (564)
302 PRK05855 short chain dehydroge 90.2 0.83 1.8E-05 48.2 7.5 36 7-43 310-346 (582)
303 PRK08063 enoyl-(acyl carrier p 90.2 1.2 2.7E-05 41.4 8.0 29 10-38 2-31 (250)
304 cd02201 FtsZ_type1 FtsZ is a G 90.2 1.9 4.1E-05 42.4 9.5 38 14-51 2-41 (304)
305 PRK13243 glyoxylate reductase; 90.2 0.36 7.9E-06 48.1 4.5 91 9-136 147-241 (333)
306 PF02056 Glyco_hydro_4: Family 90.2 0.28 6.1E-06 44.6 3.3 106 14-141 1-113 (183)
307 cd05294 LDH-like_MDH_nadp A la 90.1 1.1 2.3E-05 44.3 7.7 33 13-45 1-35 (309)
308 PRK07792 fabG 3-ketoacyl-(acyl 90.1 1.5 3.3E-05 42.7 8.8 83 8-111 8-97 (306)
309 PRK08040 putative semialdehyde 90.1 1.4 3.1E-05 44.0 8.6 92 11-135 3-97 (336)
310 PRK06046 alanine dehydrogenase 90.1 2.2 4.7E-05 42.4 9.9 75 11-113 128-203 (326)
311 PRK10537 voltage-gated potassi 90.1 1.3 2.9E-05 45.2 8.5 88 11-128 239-327 (393)
312 PRK07774 short chain dehydroge 90.0 1.8 3.8E-05 40.3 8.9 35 9-44 3-38 (250)
313 PRK07102 short chain dehydroge 90.0 1.9 4E-05 40.2 9.0 32 13-45 2-34 (243)
314 PRK06125 short chain dehydroge 90.0 1.6 3.5E-05 41.1 8.6 35 10-45 5-40 (259)
315 PRK09330 cell division protein 90.0 1.8 4E-05 43.9 9.4 111 9-136 10-135 (384)
316 PRK05653 fabG 3-ketoacyl-(acyl 89.9 1.4 3.1E-05 40.6 8.0 35 10-45 3-38 (246)
317 PRK10669 putative cation:proto 89.9 1.1 2.4E-05 47.8 8.2 78 12-117 417-495 (558)
318 PRK02705 murD UDP-N-acetylmura 89.9 2.2 4.8E-05 44.2 10.2 32 13-45 1-32 (459)
319 PRK15076 alpha-galactosidase; 89.9 1.2 2.6E-05 46.1 8.1 107 13-143 2-118 (431)
320 cd00401 AdoHcyase S-adenosyl-L 89.8 0.42 9.2E-06 49.1 4.7 35 10-45 200-234 (413)
321 PRK06196 oxidoreductase; Provi 89.8 1.2 2.7E-05 43.5 7.9 36 9-45 23-59 (315)
322 PRK08643 acetoin reductase; Va 89.8 2.1 4.5E-05 40.1 9.2 32 12-44 2-34 (256)
323 TIGR03206 benzo_BadH 2-hydroxy 89.8 1.7 3.7E-05 40.4 8.6 34 10-44 1-35 (250)
324 PRK06139 short chain dehydroge 89.8 1.4 3.1E-05 43.7 8.3 35 9-44 4-39 (330)
325 PRK12480 D-lactate dehydrogena 89.8 0.45 9.8E-06 47.4 4.8 88 9-135 143-234 (330)
326 PF02629 CoA_binding: CoA bind 89.7 1.2 2.7E-05 35.8 6.5 92 11-136 2-94 (96)
327 cd05292 LDH_2 A subgroup of L- 89.7 0.49 1.1E-05 46.6 4.9 31 14-44 2-33 (308)
328 PRK06124 gluconate 5-dehydroge 89.7 1.5 3.3E-05 41.0 8.2 36 9-45 8-44 (256)
329 PRK12367 short chain dehydroge 89.7 0.6 1.3E-05 44.2 5.4 41 4-45 6-47 (245)
330 PRK12827 short chain dehydroge 89.7 2.1 4.5E-05 39.7 9.0 33 10-43 4-37 (249)
331 TIGR01373 soxB sarcosine oxida 89.7 0.59 1.3E-05 47.5 5.6 39 12-50 30-69 (407)
332 PRK08306 dipicolinate synthase 89.6 0.48 1E-05 46.5 4.8 35 10-45 150-184 (296)
333 PRK07109 short chain dehydroge 89.6 1.6 3.6E-05 43.2 8.6 34 9-43 5-39 (334)
334 PRK08226 short chain dehydroge 89.5 1.5 3.3E-05 41.2 8.1 35 9-44 3-38 (263)
335 PRK08278 short chain dehydroge 89.5 2 4.4E-05 41.0 8.9 35 10-45 4-39 (273)
336 PLN02989 cinnamyl-alcohol dehy 89.5 2.1 4.5E-05 41.8 9.3 80 12-111 5-85 (325)
337 PLN02780 ketoreductase/ oxidor 89.5 2.6 5.6E-05 41.7 9.9 62 11-92 52-114 (320)
338 COG0039 Mdh Malate/lactate deh 89.4 0.44 9.6E-06 47.0 4.3 31 13-43 1-32 (313)
339 TIGR00036 dapB dihydrodipicoli 89.4 2.7 5.9E-05 40.5 9.7 97 13-139 2-102 (266)
340 PLN02928 oxidoreductase family 89.4 0.42 9.1E-06 48.0 4.2 35 9-44 156-190 (347)
341 PRK08818 prephenate dehydrogen 89.4 1.9 4.1E-05 43.7 9.0 35 10-44 2-37 (370)
342 PRK08374 homoserine dehydrogen 89.4 3.3 7.2E-05 41.4 10.6 109 12-136 2-123 (336)
343 PRK07806 short chain dehydroge 89.4 1.7 3.7E-05 40.4 8.2 33 10-43 4-37 (248)
344 PLN03129 NADP-dependent malic 89.4 2.9 6.2E-05 44.6 10.5 105 8-136 317-436 (581)
345 COG0281 SfcA Malic enzyme [Ene 89.3 0.38 8.3E-06 48.9 3.8 99 8-135 195-299 (432)
346 PRK09072 short chain dehydroge 89.3 1.4 3.1E-05 41.5 7.7 34 10-44 3-37 (263)
347 PRK05479 ketol-acid reductoiso 89.3 0.52 1.1E-05 46.9 4.7 36 7-43 12-47 (330)
348 PRK07074 short chain dehydroge 89.3 1.8 3.8E-05 40.7 8.2 32 12-44 2-34 (257)
349 PRK00436 argC N-acetyl-gamma-g 89.2 2.8 6.1E-05 42.0 9.9 95 13-135 3-99 (343)
350 TIGR01214 rmlD dTDP-4-dehydror 89.1 1.8 3.9E-05 41.4 8.3 30 14-44 1-31 (287)
351 PF05368 NmrA: NmrA-like famil 89.1 6.1 0.00013 36.6 11.7 95 15-135 1-101 (233)
352 PRK08324 short chain dehydroge 89.1 3 6.6E-05 45.7 10.9 34 10-44 420-454 (681)
353 PRK08664 aspartate-semialdehyd 89.0 1.4 3.1E-05 44.2 7.7 100 11-135 2-107 (349)
354 PRK13529 malate dehydrogenase; 89.0 2.8 6E-05 44.5 10.0 113 8-136 291-417 (563)
355 PRK06935 2-deoxy-D-gluconate 3 89.0 1.9 4.2E-05 40.5 8.3 35 9-44 12-47 (258)
356 PRK12809 putative oxidoreducta 89.0 2.6 5.7E-05 45.8 10.3 96 11-114 309-406 (639)
357 PRK07856 short chain dehydroge 88.9 0.95 2E-05 42.5 6.1 36 10-46 4-40 (252)
358 PF02558 ApbA: Ketopantoate re 88.9 0.59 1.3E-05 40.4 4.4 28 15-43 1-28 (151)
359 COG0665 DadA Glycine/D-amino a 88.8 0.64 1.4E-05 46.5 5.1 41 11-52 3-43 (387)
360 PRK08085 gluconate 5-dehydroge 88.8 2.2 4.9E-05 39.9 8.6 34 9-43 6-40 (254)
361 PRK15059 tartronate semialdehy 88.8 1.9 4.1E-05 42.1 8.3 31 14-45 2-32 (292)
362 PRK15438 erythronate-4-phospha 88.7 0.49 1.1E-05 48.0 4.2 35 9-44 113-147 (378)
363 PRK07097 gluconate 5-dehydroge 88.7 1.8 3.9E-05 41.0 7.9 34 9-43 7-41 (265)
364 PRK06114 short chain dehydroge 88.7 2.1 4.6E-05 40.2 8.4 35 9-44 5-40 (254)
365 PRK12746 short chain dehydroge 88.7 1.3 2.8E-05 41.5 6.8 29 9-37 3-32 (254)
366 PTZ00188 adrenodoxin reductase 88.7 3.5 7.6E-05 43.4 10.5 97 11-114 38-137 (506)
367 COG1064 AdhP Zn-dependent alco 88.6 5.1 0.00011 40.1 11.1 72 12-112 167-238 (339)
368 COG1052 LdhA Lactate dehydroge 88.6 1.4 3E-05 43.8 7.3 89 9-135 143-236 (324)
369 PLN00198 anthocyanidin reducta 88.6 4.2 9.1E-05 40.0 10.8 35 10-45 7-42 (338)
370 PRK07677 short chain dehydroge 88.6 1.9 4.2E-05 40.4 8.0 33 12-45 1-34 (252)
371 PRK11559 garR tartronate semia 88.6 2.3 5E-05 41.3 8.7 31 13-44 3-33 (296)
372 PRK11259 solA N-methyltryptoph 88.6 0.55 1.2E-05 46.9 4.4 35 12-47 3-37 (376)
373 COG2085 Predicted dinucleotide 88.5 2.1 4.5E-05 39.8 7.7 132 13-146 2-190 (211)
374 PRK07890 short chain dehydroge 88.5 1.9 4.1E-05 40.3 7.9 33 10-43 3-36 (258)
375 PRK05717 oxidoreductase; Valid 88.5 1.6 3.4E-05 41.1 7.3 35 10-45 8-43 (255)
376 PRK10538 malonic semialdehyde 88.5 2.2 4.8E-05 39.9 8.3 31 13-44 1-32 (248)
377 PRK05671 aspartate-semialdehyd 88.4 2.5 5.5E-05 42.2 9.0 90 13-135 5-97 (336)
378 TIGR00518 alaDH alanine dehydr 88.4 0.61 1.3E-05 47.2 4.7 35 10-45 165-199 (370)
379 cd08239 THR_DH_like L-threonin 88.4 1.6 3.5E-05 42.8 7.6 33 12-44 164-196 (339)
380 PLN02494 adenosylhomocysteinas 88.4 0.63 1.4E-05 48.4 4.7 37 10-47 252-288 (477)
381 TIGR02632 RhaD_aldol-ADH rhamn 88.3 2.1 4.5E-05 47.0 9.0 33 11-44 413-446 (676)
382 cd08281 liver_ADH_like1 Zinc-d 88.2 1.9 4.2E-05 43.2 8.1 32 12-43 192-223 (371)
383 TIGR01763 MalateDH_bact malate 88.2 0.68 1.5E-05 45.6 4.8 32 13-44 2-33 (305)
384 PLN02383 aspartate semialdehyd 88.2 3 6.5E-05 41.8 9.4 91 12-135 7-100 (344)
385 TIGR01771 L-LDH-NAD L-lactate 88.2 1.5 3.3E-05 43.0 7.2 68 17-112 1-73 (299)
386 PRK12409 D-amino acid dehydrog 88.2 0.66 1.4E-05 47.1 4.8 33 13-46 2-34 (410)
387 TIGR01296 asd_B aspartate-semi 88.2 2 4.4E-05 43.0 8.1 91 14-135 1-92 (339)
388 PF01266 DAO: FAD dependent ox 88.2 0.74 1.6E-05 45.0 5.0 35 14-49 1-35 (358)
389 PTZ00075 Adenosylhomocysteinas 88.2 0.66 1.4E-05 48.3 4.8 37 9-46 251-287 (476)
390 TIGR01292 TRX_reduct thioredox 88.1 2.2 4.7E-05 40.8 8.2 32 14-46 2-33 (300)
391 PRK06113 7-alpha-hydroxysteroi 88.1 1.9 4.2E-05 40.5 7.6 34 9-43 8-42 (255)
392 TIGR03451 mycoS_dep_FDH mycoth 88.1 1.6 3.4E-05 43.6 7.3 33 12-44 177-209 (358)
393 cd05297 GH4_alpha_glucosidase_ 88.1 1.7 3.6E-05 44.9 7.7 96 13-130 1-103 (423)
394 PLN02662 cinnamyl-alcohol dehy 88.0 3 6.4E-05 40.6 9.2 80 12-111 4-84 (322)
395 PRK00257 erythronate-4-phospha 88.0 0.59 1.3E-05 47.5 4.2 35 9-44 113-147 (381)
396 PRK14194 bifunctional 5,10-met 87.9 1.5 3.2E-05 43.1 6.8 77 9-137 156-233 (301)
397 PRK12779 putative bifunctional 87.9 2.4 5.1E-05 48.3 9.3 96 11-113 305-402 (944)
398 PLN02503 fatty acyl-CoA reduct 87.8 6.7 0.00014 42.4 12.3 133 3-142 110-274 (605)
399 PRK10084 dTDP-glucose 4,6 dehy 87.7 4.4 9.6E-05 40.0 10.4 30 14-43 2-32 (352)
400 PRK06523 short chain dehydroge 87.7 1.8 3.8E-05 40.7 7.1 37 9-46 6-43 (260)
401 COG1087 GalE UDP-glucose 4-epi 87.7 5.6 0.00012 39.0 10.4 114 13-142 1-124 (329)
402 PRK03803 murD UDP-N-acetylmura 87.7 2.5 5.4E-05 43.7 8.8 32 12-44 6-37 (448)
403 TIGR00936 ahcY adenosylhomocys 87.6 0.71 1.5E-05 47.3 4.5 36 10-46 193-228 (406)
404 PRK06487 glycerate dehydrogena 87.5 0.67 1.5E-05 45.9 4.2 85 9-135 145-233 (317)
405 PRK04207 glyceraldehyde-3-phos 87.5 3.3 7.2E-05 41.4 9.2 38 99-137 74-111 (341)
406 PF04321 RmlD_sub_bind: RmlD s 87.4 1.9 4.2E-05 41.8 7.4 98 13-138 1-103 (286)
407 TIGR00137 gid_trmFO tRNA:m(5)U 87.4 0.81 1.7E-05 47.3 4.8 32 13-45 1-32 (433)
408 PRK14874 aspartate-semialdehyd 87.4 3.1 6.7E-05 41.5 8.9 90 13-135 2-94 (334)
409 PRK06728 aspartate-semialdehyd 87.4 3.3 7.2E-05 41.6 9.0 91 12-135 5-99 (347)
410 PRK13303 L-aspartate dehydroge 87.4 3.1 6.7E-05 40.0 8.7 22 13-34 2-23 (265)
411 PRK09310 aroDE bifunctional 3- 87.3 0.76 1.6E-05 48.2 4.7 33 10-43 330-362 (477)
412 PRK14620 NAD(P)H-dependent gly 87.3 0.81 1.7E-05 45.2 4.7 31 14-45 2-32 (326)
413 COG0771 MurD UDP-N-acetylmuram 87.3 1.6 3.4E-05 45.3 6.9 38 10-48 5-42 (448)
414 PRK08264 short chain dehydroge 87.3 0.87 1.9E-05 42.2 4.7 36 10-45 4-40 (238)
415 PRK12921 2-dehydropantoate 2-r 87.3 0.79 1.7E-05 44.6 4.5 31 13-44 1-31 (305)
416 PRK06436 glycerate dehydrogena 87.3 0.75 1.6E-05 45.3 4.4 35 9-44 119-153 (303)
417 PRK08340 glucose-1-dehydrogena 87.2 2.8 6.1E-05 39.5 8.2 31 13-44 1-32 (259)
418 PRK00141 murD UDP-N-acetylmura 87.2 0.67 1.4E-05 48.5 4.2 40 5-45 8-47 (473)
419 PRK06270 homoserine dehydrogen 87.2 5.2 0.00011 40.0 10.4 23 12-34 2-24 (341)
420 PRK12825 fabG 3-ketoacyl-(acyl 87.2 2.5 5.4E-05 38.9 7.8 29 10-38 4-33 (249)
421 TIGR01377 soxA_mon sarcosine o 87.2 0.82 1.8E-05 45.7 4.7 33 14-47 2-34 (380)
422 PLN02256 arogenate dehydrogena 87.2 0.8 1.7E-05 45.1 4.5 35 9-44 33-67 (304)
423 PRK08416 7-alpha-hydroxysteroi 87.1 3 6.4E-05 39.4 8.3 34 8-42 4-38 (260)
424 PRK07454 short chain dehydroge 87.1 3.6 7.7E-05 38.1 8.8 32 12-44 6-38 (241)
425 PRK06128 oxidoreductase; Provi 87.1 3.1 6.7E-05 40.4 8.6 35 8-43 51-86 (300)
426 PRK12814 putative NADPH-depend 87.1 3.9 8.6E-05 44.6 10.2 34 11-45 192-225 (652)
427 TIGR01179 galE UDP-glucose-4-e 87.1 5.3 0.00011 38.5 10.3 29 14-43 1-30 (328)
428 PF05834 Lycopene_cycl: Lycope 87.0 3 6.4E-05 42.1 8.7 104 15-134 2-107 (374)
429 TIGR02197 heptose_epim ADP-L-g 86.9 2.9 6.4E-05 40.3 8.4 30 15-44 1-31 (314)
430 PRK06914 short chain dehydroge 86.9 2.4 5.3E-05 40.3 7.7 34 11-45 2-36 (280)
431 PF10087 DUF2325: Uncharacteri 86.9 4.2 9.1E-05 32.7 7.9 73 66-140 10-87 (97)
432 PRK07574 formate dehydrogenase 86.8 0.8 1.7E-05 46.6 4.4 92 9-135 189-284 (385)
433 PRK08936 glucose-1-dehydrogena 86.8 3.3 7.2E-05 39.0 8.5 32 10-42 5-37 (261)
434 PRK14188 bifunctional 5,10-met 86.7 1.8 3.8E-05 42.5 6.6 77 9-137 155-232 (296)
435 PRK07904 short chain dehydroge 86.6 4.7 0.0001 38.1 9.4 33 12-44 8-41 (253)
436 PRK08589 short chain dehydroge 86.6 2.2 4.7E-05 40.7 7.1 34 9-43 3-37 (272)
437 KOG0409 Predicted dehydrogenas 86.6 2.5 5.4E-05 41.4 7.3 31 12-43 35-65 (327)
438 PLN00106 malate dehydrogenase 86.5 1.1 2.3E-05 44.6 5.0 35 12-46 18-54 (323)
439 TIGR01746 Thioester-redct thio 86.5 12 0.00027 36.5 12.7 30 14-43 1-32 (367)
440 TIGR00465 ilvC ketol-acid redu 86.5 0.73 1.6E-05 45.6 3.8 33 10-43 1-33 (314)
441 PRK00711 D-amino acid dehydrog 86.4 0.96 2.1E-05 45.9 4.8 33 13-46 1-33 (416)
442 PRK06057 short chain dehydroge 86.4 0.85 1.9E-05 42.9 4.2 36 9-45 4-40 (255)
443 PRK08594 enoyl-(acyl carrier p 86.4 3.1 6.7E-05 39.4 8.0 33 10-43 5-40 (257)
444 PRK07067 sorbitol dehydrogenas 86.4 1.6 3.4E-05 41.0 6.0 36 10-46 4-40 (257)
445 PRK05650 short chain dehydroge 86.3 3.9 8.4E-05 38.8 8.7 31 13-44 1-32 (270)
446 COG1091 RfbD dTDP-4-dehydrorha 86.3 9.6 0.00021 37.1 11.3 98 14-137 2-101 (281)
447 PRK08862 short chain dehydroge 86.3 3.3 7.2E-05 38.6 8.0 33 10-43 3-36 (227)
448 PRK12810 gltD glutamate syntha 86.3 5.7 0.00012 41.4 10.6 34 11-45 142-175 (471)
449 PRK12775 putative trifunctiona 86.2 3.8 8.3E-05 47.0 9.9 33 12-45 430-462 (1006)
450 PRK08220 2,3-dihydroxybenzoate 86.2 2 4.3E-05 40.0 6.6 36 10-46 6-42 (252)
451 PF00670 AdoHcyase_NAD: S-aden 86.2 0.91 2E-05 40.5 3.9 38 9-47 20-57 (162)
452 PRK05884 short chain dehydroge 86.2 2.5 5.4E-05 39.1 7.1 31 14-45 2-33 (223)
453 PRK08267 short chain dehydroge 86.2 2.8 6.2E-05 39.4 7.6 31 13-44 2-33 (260)
454 PRK07791 short chain dehydroge 86.1 2.5 5.4E-05 40.8 7.3 35 9-44 3-38 (286)
455 PF01494 FAD_binding_3: FAD bi 86.1 0.93 2E-05 44.2 4.4 33 13-46 2-34 (356)
456 PRK00811 spermidine synthase; 86.1 2.3 5.1E-05 41.3 7.1 35 11-46 76-110 (283)
457 PRK12831 putative oxidoreducta 86.1 3.7 8.1E-05 42.8 9.1 34 11-45 139-172 (464)
458 PRK06841 short chain dehydroge 86.1 1 2.3E-05 42.1 4.6 34 10-44 13-47 (255)
459 PLN00016 RNA-binding protein; 86.1 3.6 7.8E-05 41.4 8.8 114 8-141 48-170 (378)
460 PRK08410 2-hydroxyacid dehydro 86.1 0.92 2E-05 44.8 4.3 36 8-44 141-176 (311)
461 TIGR01772 MDH_euk_gproteo mala 86.0 1 2.2E-05 44.6 4.6 33 14-46 1-35 (312)
462 PRK11873 arsM arsenite S-adeno 86.0 3.9 8.4E-05 39.2 8.5 76 11-110 77-153 (272)
463 COG0136 Asd Aspartate-semialde 86.0 4.6 9.9E-05 40.2 9.0 108 13-150 2-113 (334)
464 PF03721 UDPG_MGDP_dh_N: UDP-g 85.9 0.7 1.5E-05 42.1 3.1 87 13-114 1-87 (185)
465 PRK12745 3-ketoacyl-(acyl-carr 85.8 4.9 0.00011 37.4 9.0 31 12-43 2-33 (256)
466 TIGR02028 ChlP geranylgeranyl 85.7 1 2.2E-05 46.0 4.5 31 14-45 2-32 (398)
467 PRK08993 2-deoxy-D-gluconate 3 85.7 3.3 7.1E-05 38.9 7.8 34 9-43 7-41 (253)
468 cd00704 MDH Malate dehydrogena 85.7 1.1 2.3E-05 44.6 4.5 33 13-45 1-40 (323)
469 PRK13301 putative L-aspartate 85.7 1.3 2.9E-05 42.6 5.0 113 12-135 2-122 (267)
470 PRK09135 pteridine reductase; 85.6 3.7 8E-05 38.0 8.0 32 11-43 5-37 (249)
471 PRK12937 short chain dehydroge 85.6 4.1 8.9E-05 37.7 8.3 32 10-42 3-35 (245)
472 COG0111 SerA Phosphoglycerate 85.6 1 2.2E-05 44.8 4.3 34 9-43 139-172 (324)
473 PRK09291 short chain dehydroge 85.6 4.7 0.0001 37.6 8.7 31 12-43 2-33 (257)
474 COG0345 ProC Pyrroline-5-carbo 85.5 5.7 0.00012 38.4 9.3 88 13-133 2-93 (266)
475 PRK14618 NAD(P)H-dependent gly 85.5 1.1 2.4E-05 44.3 4.6 32 13-45 5-36 (328)
476 PRK06932 glycerate dehydrogena 85.4 0.94 2E-05 44.8 4.0 87 8-135 143-233 (314)
477 PLN02740 Alcohol dehydrogenase 85.4 6.1 0.00013 39.8 10.1 33 12-44 199-231 (381)
478 TIGR02415 23BDH acetoin reduct 85.4 4.3 9.3E-05 37.8 8.4 31 13-44 1-32 (254)
479 PRK05557 fabG 3-ketoacyl-(acyl 85.3 4.6 9.9E-05 37.2 8.5 32 10-42 3-35 (248)
480 PF12847 Methyltransf_18: Meth 85.3 5.1 0.00011 32.2 7.8 77 12-111 2-78 (112)
481 TIGR02371 ala_DH_arch alanine 85.3 4.6 0.0001 40.1 8.9 74 12-113 128-202 (325)
482 PRK09126 hypothetical protein; 85.2 1.1 2.4E-05 45.1 4.5 36 11-47 2-37 (392)
483 PRK08303 short chain dehydroge 85.2 4.5 9.8E-05 39.6 8.7 35 10-45 6-41 (305)
484 PLN03139 formate dehydrogenase 85.1 0.92 2E-05 46.2 3.9 92 9-135 196-291 (386)
485 TIGR00715 precor6x_red precorr 85.1 6.9 0.00015 37.6 9.7 94 13-134 1-98 (256)
486 PRK01747 mnmC bifunctional tRN 85.1 1.1 2.5E-05 48.8 4.8 33 13-46 261-293 (662)
487 PRK06398 aldose dehydrogenase; 85.0 3.6 7.7E-05 38.9 7.7 37 9-46 3-40 (258)
488 PRK11101 glpA sn-glycerol-3-ph 85.0 1.2 2.7E-05 47.4 5.0 36 12-48 6-41 (546)
489 TIGR01289 LPOR light-dependent 85.0 4.3 9.2E-05 39.8 8.4 35 11-45 2-37 (314)
490 PRK08507 prephenate dehydrogen 84.9 1.3 2.9E-05 42.6 4.7 30 14-43 2-32 (275)
491 PRK06185 hypothetical protein; 84.8 1.3 2.9E-05 44.8 4.9 35 11-46 5-39 (407)
492 PRK07608 ubiquinone biosynthes 84.7 1.3 2.8E-05 44.5 4.8 35 12-47 5-39 (388)
493 PRK08773 2-octaprenyl-3-methyl 84.7 1.2 2.5E-05 45.1 4.4 34 12-46 6-39 (392)
494 PF01370 Epimerase: NAD depend 84.7 2.6 5.7E-05 38.6 6.5 25 15-39 1-26 (236)
495 PRK07494 2-octaprenyl-6-methox 84.7 1.1 2.5E-05 45.0 4.3 34 12-46 7-40 (388)
496 PRK14031 glutamate dehydrogena 84.6 4.3 9.3E-05 42.1 8.5 37 9-45 225-261 (444)
497 cd01338 MDH_choloroplast_like 84.6 1.2 2.5E-05 44.3 4.3 32 13-44 3-41 (322)
498 TIGR01963 PHB_DH 3-hydroxybuty 84.6 5.5 0.00012 37.0 8.7 32 13-45 2-34 (255)
499 PRK12748 3-ketoacyl-(acyl-carr 84.6 2.4 5.1E-05 39.8 6.2 35 10-45 3-40 (256)
500 PRK08628 short chain dehydroge 84.5 4.8 0.0001 37.7 8.3 33 10-43 5-38 (258)
No 1
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=3.6e-94 Score=788.21 Aligned_cols=408 Identities=32% Similarity=0.494 Sum_probs=337.8
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCC-----CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL 76 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv-----~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~ 76 (410)
+|.++|++|++++|+||||||+|||++|+|+++|| |+|+|+|+|+|+.|||||||||+.+|||++|+++|+++++
T Consensus 409 ~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~ 488 (1008)
T TIGR01408 409 FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATL 488 (1008)
T ss_pred cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHH
Confidence 69999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred hhCCCCeEEEEccCCCC---CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCcc
Q 015243 77 KFRPQMSITAHHANVKD---PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTEC 153 (410)
Q Consensus 77 ~~np~v~i~~~~~~i~~---~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c 153 (410)
++||+++|+++..++.. ..++.+||+++|+|++|+||.++|.+++++|+.+++|+|++|+.|+.|++++++|+.|+|
T Consensus 489 ~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~v~v~ip~~te~ 568 (1008)
T TIGR01408 489 KINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGNTQVVVPHLTES 568 (1008)
T ss_pred HHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceeeEEEEeCCCcCC
Confidence 99999999999999853 346678999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCcccc-c-ccc----------C-ccc-cchhhHHhhh
Q 015243 154 YECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEND-L-NVR----------S-SDA-SSSAHAEDVF 219 (410)
Q Consensus 154 ~~C~~~~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~-~-~~~----------~-~~~-~~~~~~~~~~ 219 (410)
|.|.++++++++|+||++++|+.++|||+||++ +|+.+|+..++..+ + ..+ . ... ..++.+.+.+
T Consensus 569 y~~~~d~~~~~~P~Ctl~~~P~~~~h~i~wa~~-~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l 647 (1008)
T TIGR01408 569 YGSSRDPPEKEIPFCTLKSFPAAIEHTIQWARD-KFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLL 647 (1008)
T ss_pred CCCCCCCCCCCCCcccccCCCCCchHHHHHHHH-HHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999989999999999999999999999999 79999997665421 1 110 0 000 1234444444
Q ss_pred ---hcCCcccHHHHHHHHHHhhhcccHHHHhcC----------CcccCC-CCCCCccccC--CCCCcchhhhcccccccc
Q 015243 220 ---VRRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSA--DVMPENLTEQNGNVAKNC 283 (410)
Q Consensus 220 ---~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~fw~~-k~~P~pl~~~--~~~~~~~~~~~~~~~~~~ 283 (410)
.+..+++|++||+.+|+++|+++|+|||++ ++||++ ||+|+||+|+ +..+.+++.++++|++..
T Consensus 648 ~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ 727 (1008)
T TIGR01408 648 SKEKPRNFSQCVEWARLKFEKYFNNKALQLLHCFPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATV 727 (1008)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999987 899996 9999999999 445566777777776542
Q ss_pred ---cc---cchhhhHHhhh---CCC-----CCCCcccc------hhchHHHHHHHHHHHHhh---h-----hccCCcccc
Q 015243 284 ---VV---DTSSVSAMASL---GLK-----NPQDTWTL------LESSRIFLEALKLFFAKR---E-----KEIGNLSFD 335 (410)
Q Consensus 284 ---~~---~~~~~~~~~~~---~~~-----~~~~~~~~------~~~~~~~~~~~~~~~~~~---~-----~~~~p~~Fe 335 (410)
+. +.......+.+ .+. ....+++- .++...+.+++.++..+. . ..+.|++||
T Consensus 728 ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~Fe 807 (1008)
T TIGR01408 728 YGIPFAEEDLSADALLNILSEVKIPEFKPRSNKKIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFE 807 (1008)
T ss_pred hCCCCccccchHHHHHHHHhcCCCCCCCCCcCceeecChhhhcccccccchHHHHHHHHHHhhccccccCCCCCCceeec
Confidence 11 11101111111 111 11122321 100111233344433321 1 248899999
Q ss_pred CCcHH--HHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHHHHHhcC--ccccccccccC
Q 015243 336 KDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD--TDKYRCGSISL 410 (410)
Q Consensus 336 KDDd~--hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~k~~~~~--~~~~r~~~~~l 410 (410)
||||+ |||||+|||||||+||+||++|||++|+||||||||||||||+||||||+|+||++.|. ++.|||+|+||
T Consensus 808 KDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~~i~~~kn~f~nl 886 (1008)
T TIGR01408 808 KDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCLELIKVTDGGYKFEVYKNCFLNL 886 (1008)
T ss_pred cCCCcchHHHHHHHHHhhHHHhcCCCcccHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHhccccHHHHhHHHHhh
Confidence 99998 99999999999999999999999999999999999999999999999999999999994 69999999997
No 2
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-95 Score=745.99 Aligned_cols=408 Identities=33% Similarity=0.511 Sum_probs=337.6
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCC-----cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQ-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL 76 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~-----~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~ 76 (410)
||.+.|+||.++++++||||+||||++||++++|+| +|+++|+|.||.||||||||||..|||++|+++|+++++
T Consensus 420 fG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~ 499 (1013)
T KOG2012|consen 420 FGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAAR 499 (1013)
T ss_pred hchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchHHHHHHHHHH
Confidence 799999999999999999999999999999999994 799999999999999999999999999999999999999
Q ss_pred hhCCCCeEEEEccCC---CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCcc
Q 015243 77 KFRPQMSITAHHANV---KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTEC 153 (410)
Q Consensus 77 ~~np~v~i~~~~~~i---~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c 153 (410)
.+||+++|+++..++ +|..|+++||.+.|+|.+|+||++||+|+++.|+.+.+|++++||.|++|++++++|+.|+.
T Consensus 500 ~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQVvvPhlTEs 579 (1013)
T KOG2012|consen 500 GMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQVVVPHLTES 579 (1013)
T ss_pred hcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccceeEEecccccc
Confidence 999999999999998 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCcccc--cccc----------Ccccc--chhhHHhhh
Q 015243 154 YECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEND--LNVR----------SSDAS--SSAHAEDVF 219 (410)
Q Consensus 154 ~~C~~~~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~--~~~~----------~~~~~--~~~~~~~~~ 219 (410)
|....+|+++++|+||+++||+.++|||+|||+ .|+.+|.+..+..+ +..+ +.... .++.+.+.+
T Consensus 580 Y~SS~DPPEksiP~CTlknFPn~IeHTiqWAR~-eFEg~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l 658 (1013)
T KOG2012|consen 580 YGSSRDPPEKSIPVCTLKSFPNAIEHTIQWARD-EFEGLFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCL 658 (1013)
T ss_pred ccccCCCcccCCceeeeccCchHHHHHHHHHHH-HHHHHhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHh
Confidence 999999999999999999999999999999999 79999998765421 1111 00011 223333344
Q ss_pred h--cCCcccHHHHHHHHHHhhhcccHHHHhcC----------CcccCC-CCCCCccccCCCC--Ccchhhhcccccccc-
Q 015243 220 V--RRKDEDIDQYGRRIYDHVFGYNIEVASSN----------EETWKN-RNRPKPIYSADVM--PENLTEQNGNVAKNC- 283 (410)
Q Consensus 220 ~--~~~~~~~~~~a~~~f~~~F~~~I~~ll~~----------~~fw~~-k~~P~pl~~~~~~--~~~~~~~~~~~~~~~- 283 (410)
. +..|++|++||+..|+++|+++|.|||.+ .|||++ ||+|+||+|+... +-.+++.++++++..
T Consensus 659 ~~rp~~~~dCv~warl~f~~~f~~~ikqLl~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~ 738 (1013)
T KOG2012|consen 659 SERPQNWQDCVEWARLHFEKYFHNRIKQLLHNFPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVY 738 (1013)
T ss_pred hcCCccHHHHHHHHHHHHHHHhhHHHHHhhcCCCcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhc
Confidence 3 46899999999999999999999999975 899986 9999999999544 445566666665431
Q ss_pred --cccchhhhHH---hhh--CCCCCCC---cc-cchh------c--hHHHHHHHHHHHHhhhh----ccCCccccCCcHH
Q 015243 284 --VVDTSSVSAM---ASL--GLKNPQD---TW-TLLE------S--SRIFLEALKLFFAKREK----EIGNLSFDKDDQL 340 (410)
Q Consensus 284 --~~~~~~~~~~---~~~--~~~~~~~---~~-~~~~------~--~~~~~~~~~~~~~~~~~----~~~p~~FeKDDd~ 340 (410)
+...+..... ... +..++.+ +. +..+ + -..-+.+++..+..++. .+.|+.||||||.
T Consensus 739 gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~~~~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~~~~~~~p~~FEKDDDs 818 (1013)
T KOG2012|consen 739 GIPGSQDREALAELLERVIVPEFEPKQKVKIVVEEAELAASSASVDDSAAIDQLNKALPSPSVLPSFKMKPLDFEKDDDS 818 (1013)
T ss_pred CCCcccCHHHhhhhHhhcCCCccccccCCeecccccccccccccCCchHHHHHHhhcccccccCCCCceeeeeecccccc
Confidence 1111111000 000 0001110 00 0000 0 01123445444444332 5889999999997
Q ss_pred --HHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHHHHHhc--CccccccccccC
Q 015243 341 --AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLK--DTDKYRCGSISL 410 (410)
Q Consensus 341 --hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~k~~~~--~~~~~r~~~~~l 410 (410)
|||||+|||||||.||+||++||+++|+|||+||||||||||+|+||+|+|+||++.| ++++|||+|+||
T Consensus 819 N~H~dfi~aasnlRA~nY~I~~adr~k~K~IaGkIIPAIATtTa~v~Glv~LElyKv~~G~~~~e~~Kn~flnL 892 (1013)
T KOG2012|consen 819 NFHMDFITAASNLRAQNYSIPPADRLKTKRIAGKIIPAIATTTAAVSGLVCLELYKVVDGKRPVEAYKNTFLNL 892 (1013)
T ss_pred ccchHHHHHHhhhhhhccCCCccchhhhheeeeeEEEEEeehhHHHHHHHHhhhhhhccCCCchHHhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999 479999999997
No 3
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=2.8e-91 Score=702.65 Aligned_cols=334 Identities=39% Similarity=0.619 Sum_probs=297.5
Q ss_pred cEEEECCcHHHHHHHHHHHHhCC-----CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 14 KVLMVGAGGIGCELLKTLALSGF-----QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv-----~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
||+||||||+|||++|+|+++|| |+|+|+|+|+||.|||+|||||+++|||++|+++++++++++||+++|+++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC---CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCCCCCC
Q 015243 89 ANVKD---PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTY 165 (410)
Q Consensus 89 ~~i~~---~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~~~~~ 165 (410)
.++.+ ..++.+|++++|+|++|+||.++|.+++++|+.+++|+|++|+.|+.|++++++|+.|+||.|..++++.++
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~~p~~~~~ 160 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLTESYSSSRDPPEKSI 160 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCCCCccCCCCCCCCCC
Confidence 98853 346678999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred CceeeccCCCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccHHHHHHHHHHhhhcccHHH
Q 015243 166 PVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEV 245 (410)
Q Consensus 166 p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~ 245 (410)
|+||++++|+.++|||+||++ +|+.+|++.++. ...++ +++|++||+.+|+++|.++|+|
T Consensus 161 P~Ctl~~~P~~~eHcI~wA~~-~F~~lF~~~~~~---------------~~~~~----~~~c~~~a~~~f~~~F~~~I~~ 220 (435)
T cd01490 161 PLCTLKNFPNAIEHTIQWARD-EFEGLFKQPPEN---------------VNQYL----FEDCVRWARLLFEKYFNNNIKQ 220 (435)
T ss_pred CCccccCCCCCchHHHHHHHH-HHHHHhccchHH---------------HHHhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 799999865431 11121 7899999999999999999999
Q ss_pred HhcC----------CcccCC-CCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccchhchHHH
Q 015243 246 ASSN----------EETWKN-RNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIF 314 (410)
Q Consensus 246 ll~~----------~~fw~~-k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (410)
||++ ++||++ ||+|+|++|+...+.+ ..|
T Consensus 221 ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h----------------------------------------~~f 260 (435)
T cd01490 221 LLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLH----------------------------------------LDF 260 (435)
T ss_pred HHHhCccccccccccccccCCCCCCCCCCCCCCCHHH----------------------------------------HHH
Confidence 9985 899987 8899999888432211 122
Q ss_pred HHHHHHHHHhhhhccCCccccCCcHH--HHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHH
Q 015243 315 LEALKLFFAKREKEIGNLSFDKDDQL--AVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEA 392 (410)
Q Consensus 315 ~~~~~~~~~~~~~~~~p~~FeKDDd~--hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~ 392 (410)
+.+...+.++. .+-..||||||+ |||||+|||||||+||+|++.|++++|+||||||||||||||+||||+|+|+
T Consensus 261 v~~~a~l~a~~---~~~~~FeKDdd~n~h~~fi~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~ 337 (435)
T cd01490 261 VLAAANLYAEV---YGIPGFEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLEL 337 (435)
T ss_pred HHHHHHHHHHh---cCCCccccCCchhHHHHHHHHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHH
Confidence 22232222211 111239999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC--ccccccccccC
Q 015243 393 IKVLLKD--TDKYRCGSISL 410 (410)
Q Consensus 393 ~k~~~~~--~~~~r~~~~~l 410 (410)
||+++++ ++.|||+|+||
T Consensus 338 ~K~~~~~~~~~~~~n~~~nl 357 (435)
T cd01490 338 YKVVDGKRPLEAYKNAFLNL 357 (435)
T ss_pred HHHHhCCccHHHcchHhhhc
Confidence 9999994 79999999997
No 4
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-91 Score=686.89 Aligned_cols=395 Identities=55% Similarity=0.871 Sum_probs=335.9
Q ss_pred CCCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP 80 (410)
Q Consensus 1 ~~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np 80 (410)
|...+.++.+.++|||||||||||||++|+|+++|+++|+|||.|+|+.|||||||||+.+|||++||.+|++.++++||
T Consensus 1 ~~~~~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnp 80 (603)
T KOG2013|consen 1 MSPREKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNP 80 (603)
T ss_pred CchHHHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCC
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCC
Q 015243 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 160 (410)
Q Consensus 81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~ 160 (410)
++++.++..++.+..++.+||++||+|++|+||.+||.|+|++|...++|+|++|+.|+.||++++.+|.|+||+|.+.|
T Consensus 81 n~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK~ 160 (603)
T KOG2013|consen 81 NIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPKP 160 (603)
T ss_pred CCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCcccc--ccccCcccc--c-hh------hHHhhhhcCCcccHHH
Q 015243 161 APKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEND--LNVRSSDAS--S-SA------HAEDVFVRRKDEDIDQ 229 (410)
Q Consensus 161 ~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~--~~~~~~~~~--~-~~------~~~~~~~~~~~~~~~~ 229 (410)
.|++||+|||||+|+.++|||.||++++|.++|+....... .+..+.+.. . .+ ..+++.+++ +..+.
T Consensus 161 ~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~--~~i~~ 238 (603)
T KOG2013|consen 161 VPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERR--ESIVE 238 (603)
T ss_pred CCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHH--HHHHH
Confidence 99999999999999999999999999899999997544211 111010000 0 01 111222111 12223
Q ss_pred HH-------HHHHHhhhcccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCC
Q 015243 230 YG-------RRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQ 302 (410)
Q Consensus 230 ~a-------~~~f~~~F~~~I~~ll~~~~fw~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (410)
+. ..+|.++|.++|++|+.++..|+.|++|.||+|++.......+.+. ..+ +..-...++|
T Consensus 239 ~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns-----------~~q-~~~~a~~~~~ 306 (603)
T KOG2013|consen 239 IDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINS-----------IVQ-SITSAQLNDQ 306 (603)
T ss_pred HhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccc-----------hhh-hccccccCCc
Confidence 32 5689999999999999999999999999999988654332221110 000 0011235678
Q ss_pred CcccchhchHHHHHHHHHHHHhhhhccCC--ccccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhH
Q 015243 303 DTWTLLESSRIFLEALKLFFAKREKEIGN--LSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATT 380 (410)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT 380 (410)
.+|+++++..+|..+++.+..+..+.-.- +.|||||.+.|+||+||+|+||+.|+||..+.|++|.||||||||||||
T Consensus 307 ~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtT 386 (603)
T KOG2013|consen 307 NVWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATT 386 (603)
T ss_pred ceeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhh
Confidence 99999999999999998885554443344 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccccc
Q 015243 381 NAIIAGLIVIEAIKVLLKDTDKYRCGSIS 409 (410)
Q Consensus 381 ~aivagl~~~e~~k~~~~~~~~~r~~~~~ 409 (410)
||+|||+.|+|.+|+|+|...++|++|.+
T Consensus 387 NAiIagliv~eaiKvl~~~~~~~~~~f~~ 415 (603)
T KOG2013|consen 387 NAIIAGLIVTEAIKVLGGDFDDCNMIFLA 415 (603)
T ss_pred hhHHHHHHHHHHHHHhccchhcceeeEEc
Confidence 99999999999999999999999999864
No 5
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=4.9e-85 Score=635.51 Aligned_cols=288 Identities=66% Similarity=1.074 Sum_probs=276.2
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 93 (410)
||+|||+||+|||++|+|+++|+|+|+|+|+|.||.+||+|||||+++|||++|+++++++++++||+++|+++..++++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCCCCCCCceeeccC
Q 015243 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITST 173 (410)
Q Consensus 94 ~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~~~~~p~cti~~~ 173 (410)
..++.+|++++|+||+|+||.++|.++|++|+.+++|+|++|+.|+.|+++++.|+.++||+|.++++++++|+|||+++
T Consensus 81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~~~~~~~pictI~~~ 160 (312)
T cd01489 81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYECQPKETPKTFPVCTIRST 160 (312)
T ss_pred ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCCCCCCcCCcceecCC
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccHHHHHHHHHHhhhcccHHHHhcCCccc
Q 015243 174 PSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEETW 253 (410)
Q Consensus 174 p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~~~fw 253 (410)
|+.++|||+||++ +|+ +|+++|.++|++|+++++||
T Consensus 161 p~~~~hci~~a~~-~f~-------------------------------------------~~~~~f~~~i~~l~~~~~~w 196 (312)
T cd01489 161 PSQPIHCIVWAKS-LFF-------------------------------------------LFNKVFKDDIERLLSMEELW 196 (312)
T ss_pred CCCCEeehhHHHH-HHH-------------------------------------------HHHHHHHHHHHHHHhhhhhh
Confidence 9999999999998 454 57899999999999999999
Q ss_pred CCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccchhchHHHHHHHHHHHHhhhhccCCcc
Q 015243 254 KNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNLS 333 (410)
Q Consensus 254 ~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 333 (410)
+++++|+|++|+. ++
T Consensus 197 ~~~~~p~p~~~~~-----------------------------------------------------------------~~ 211 (312)
T cd01489 197 KTRKPPVPLSWKE-----------------------------------------------------------------LT 211 (312)
T ss_pred cCCCCCCCCCCCC-----------------------------------------------------------------cC
Confidence 9988999984431 37
Q ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHHHHHhcCccccccccccC
Q 015243 334 FDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTDKYRCGSISL 410 (410)
Q Consensus 334 FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~k~~~~~~~~~r~~~~~l 410 (410)
|||||++||+||+|+|||||++|+|+..|++++|+||||||||||||||||||++++|++|++.+..+.+|++|+||
T Consensus 212 fdkDd~~~~~~v~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~~~~ 288 (312)
T cd01489 212 FDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNL 288 (312)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=1.2e-69 Score=509.42 Aligned_cols=233 Identities=50% Similarity=0.828 Sum_probs=222.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 93 (410)
||+|||+||+|||++|+|+++|+|+|+|+|+|+|+.|||+|||||+++|+|++|+++++++++++||+++|+++..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred -CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCCCCCCCceeecc
Q 015243 94 -PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPAPKTYPVCTITS 172 (410)
Q Consensus 94 -~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~~~~~p~cti~~ 172 (410)
..++.+|++++|+||+|+||.++|.+++++|+.+++|+|++|+.|+.|+++++.|+.++||.|...+++.++|+||+++
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~~~~~~~~p~Cti~~ 160 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIECTLYPPQKNFPMCTIAS 160 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcccCCCCCCCCCCccccCC
Confidence 3456789999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccHHHHHHHHHHhhhcccHHHHhcCCcc
Q 015243 173 TPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNIEVASSNEET 252 (410)
Q Consensus 173 ~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I~~ll~~~~f 252 (410)
+|+.|+|||.||+++ |
T Consensus 161 ~P~~~~hci~~a~~~-~--------------------------------------------------------------- 176 (234)
T cd01484 161 MPRLPEHCIEWARML-Q--------------------------------------------------------------- 176 (234)
T ss_pred CCCCchHHHHHHHHH-H---------------------------------------------------------------
Confidence 999999999999983 0
Q ss_pred cCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccchhchHHHHHHHHHHHHhhhhccCCc
Q 015243 253 WKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFAKREKEIGNL 332 (410)
Q Consensus 253 w~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 332 (410)
T Consensus 177 -------------------------------------------------------------------------------- 176 (234)
T cd01484 177 -------------------------------------------------------------------------------- 176 (234)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHH
Q 015243 333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAI 393 (410)
Q Consensus 333 ~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~ 393 (410)
| ||+.||+||+++||+||++|+|++.|++++|+||||||||||||||||||++|+|++
T Consensus 177 -~--d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 177 -W--DDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred -h--CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCeecchhhHHHHHHHHHHHhhC
Confidence 0 667799999999999999999999999999999999999999999999999999984
No 7
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=5.8e-66 Score=496.83 Aligned_cols=250 Identities=44% Similarity=0.758 Sum_probs=230.8
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 93 (410)
||+|||+||+|||++|+|+++|||+|+|+|+|+|+.|||+|||||+.+|||++||++++++++++||+++|+++..++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CcchHhhhccCcEEEEccCChHHHHHHHHHHHHC--------CCcEEEecccCccceEEEEeCCCCccccccCC--CCCC
Q 015243 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA--------DVPLVESGTTGFLGQVTVHVKGKTECYECQPK--PAPK 163 (410)
Q Consensus 94 ~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~--------~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~--~~~~ 163 (410)
++.+|++++|+||+|+||.++|+++|+.|.+. ++|+|++|+.|+.|+++++.|+.|+||+|..+ |++.
T Consensus 81 --~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~ 158 (291)
T cd01488 81 --KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQV 158 (291)
T ss_pred --hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCC
Confidence 46799999999999999999999999998764 49999999999999999999999999999976 5667
Q ss_pred CCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccHHHHHHHHHHhhhcccH
Q 015243 164 TYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQYGRRIYDHVFGYNI 243 (410)
Q Consensus 164 ~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~f~~~F~~~I 243 (410)
++|+||++++|+.++|||+||+.++
T Consensus 159 ~~p~Cti~~~P~~~~hci~~a~~~~------------------------------------------------------- 183 (291)
T cd01488 159 TFPLCTIANTPRLPEHCIEYASLIQ------------------------------------------------------- 183 (291)
T ss_pred CCCcccccCCCCCcchheeeeeeee-------------------------------------------------------
Confidence 8999999999999999999999741
Q ss_pred HHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccchhchHHHHHHHHHHHH
Q 015243 244 EVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLESSRIFLEALKLFFA 323 (410)
Q Consensus 244 ~~ll~~~~fw~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (410)
|+..+ |
T Consensus 184 ---------~~~~~-~---------------------------------------------------------------- 189 (291)
T cd01488 184 ---------WPKEF-P---------------------------------------------------------------- 189 (291)
T ss_pred ---------ccccc-C----------------------------------------------------------------
Confidence 21100 0
Q ss_pred hhhhccCCccccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHHHHHhcCcc
Q 015243 324 KREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKDTD 401 (410)
Q Consensus 324 ~~~~~~~p~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~k~~~~~~~ 401 (410)
-..||+||+.||+||+..|+.||++|+|+..+++.+++|+|||||||+||||||||+++.|++|++.+...
T Consensus 190 -------~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~ 260 (291)
T cd01488 190 -------FVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYE 260 (291)
T ss_pred -------CCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhcccc
Confidence 01699999999999999999999999999999999999999999999999999999999999999998533
No 8
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-59 Score=439.77 Aligned_cols=259 Identities=42% Similarity=0.748 Sum_probs=237.5
Q ss_pred CHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC
Q 015243 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (410)
Q Consensus 3 g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v 82 (410)
++|..+-|.+.+|+|+|+||+|||++|||+++|++.+++||+|+|+.+||||||||+++|||++||++||+++.+..|..
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH---CC-------CcEEEecccCccceEEEEeCCCCc
Q 015243 83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA---AD-------VPLVESGTTGFLGQVTVHVKGKTE 152 (410)
Q Consensus 83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~---~~-------~p~i~~g~~G~~G~v~~~~~~~t~ 152 (410)
.|.+|..++++ +..+|+++||+||+++|++++|+++|.+..+ .+ +|+|++|+.|++|++.++.|+.|.
T Consensus 111 ~v~~h~~kIqd--~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~Ta 188 (422)
T KOG2015|consen 111 VVVPHRQKIQD--KPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITA 188 (422)
T ss_pred EEeeeecchhc--CCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccH
Confidence 99999999954 5789999999999999999999999998765 23 699999999999999999999999
Q ss_pred cccccCC--CCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccccccccCccccchhhHHhhhhcCCcccHHHH
Q 015243 153 CYECQPK--PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQENDLNVRSSDASSSAHAEDVFVRRKDEDIDQY 230 (410)
Q Consensus 153 c~~C~~~--~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (410)
|++|..+ |++.+||+|||.+.|..|+||++|++-+.|..++
T Consensus 189 CieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~------------------------------------- 231 (422)
T KOG2015|consen 189 CIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELN------------------------------------- 231 (422)
T ss_pred HHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhC-------------------------------------
Confidence 9999855 6667899999999999999999998853111100
Q ss_pred HHHHHHhhhcccHHHHhcCCcccCCCCCCCccccCCCCCcchhhhcccccccccccchhhhHHhhhCCCCCCCcccchhc
Q 015243 231 GRRIYDHVFGYNIEVASSNEETWKNRNRPKPIYSADVMPENLTEQNGNVAKNCVVDTSSVSAMASLGLKNPQDTWTLLES 310 (410)
Q Consensus 231 a~~~f~~~F~~~I~~ll~~~~fw~~k~~P~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (410)
|
T Consensus 232 ----------------------------~--------------------------------------------------- 232 (422)
T KOG2015|consen 232 ----------------------------P--------------------------------------------------- 232 (422)
T ss_pred ----------------------------c---------------------------------------------------
Confidence 0
Q ss_pred hHHHHHHHHHHHHhhhhccCCccccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHH
Q 015243 311 SRIFLEALKLFFAKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVI 390 (410)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~p~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~ 390 (410)
....+|.||+.||+||+--+|.||..|+|+.+++..+.++..+||||+|||||+||+..+.
T Consensus 233 -------------------~g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ 293 (422)
T KOG2015|consen 233 -------------------FGVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCAT 293 (422)
T ss_pred -------------------cCCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHH
Confidence 0125899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 015243 391 EAIKVLLK 398 (410)
Q Consensus 391 e~~k~~~~ 398 (410)
|++|++..
T Consensus 294 ea~Kl~t~ 301 (422)
T KOG2015|consen 294 EALKLLTA 301 (422)
T ss_pred HHHHHHHh
Confidence 99999986
No 9
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=3.3e-38 Score=302.35 Aligned_cols=171 Identities=25% Similarity=0.363 Sum_probs=156.4
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|+++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.|||+||++|+.+|||++|+++++++++++||+
T Consensus 17 iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~ 96 (287)
T PRK08223 17 ITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPE 96 (287)
T ss_pred cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCCh--HHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~--~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~ 159 (410)
++|+++...+++.+ ..++++++|+||+|+|++ ++|.++|+.|+++++|+|++++.|+.|++.++.|+ ++||+|.++
T Consensus 97 v~V~~~~~~l~~~n-~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~p~-~p~~~~~f~ 174 (287)
T PRK08223 97 LEIRAFPEGIGKEN-ADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPG-GMSFDDYFD 174 (287)
T ss_pred CEEEEEecccCccC-HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEcCC-CCchhhhcC
Confidence 99999999997654 457899999999999986 89999999999999999999999999999999885 799999865
Q ss_pred C---C-C---------CCCCceeeccCC
Q 015243 160 P---A-P---------KTYPVCTITSTP 174 (410)
Q Consensus 160 ~---~-~---------~~~p~cti~~~p 174 (410)
. + + ...|.|.-.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~p~c~~~gvl 202 (287)
T PRK08223 175 LSDGMNEVEKAVRFLAGLAPSMLHRGYL 202 (287)
T ss_pred CCCCCCchhhhcccCCcCCCccccCCcc
Confidence 3 2 2 356777655543
No 10
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=6.1e-38 Score=289.98 Aligned_cols=171 Identities=30% Similarity=0.518 Sum_probs=158.8
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|++.|++|++++|+|+|+||+|++++++|+++|+++|+|+|+|.|+.+||+||+||+++|+|++|+++++++++++||+
T Consensus 11 ~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 90 (202)
T TIGR02356 11 IGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD 90 (202)
T ss_pred cCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCC-CCccccccCCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKP 160 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~-~t~c~~C~~~~ 160 (410)
++++.+...+++.. ..++++++|+||+|+|+.++|.+++++|+++++|+|.+++.|+.|++.++.|+ .++||.|..+.
T Consensus 91 v~i~~~~~~i~~~~-~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~~~~c~~c~~~~ 169 (202)
T TIGR02356 91 IQVTALKERVTAEN-LELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPD 169 (202)
T ss_pred CEEEEehhcCCHHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCCCCCChhhcCCC
Confidence 99999998886532 34688999999999999999999999999999999999999999999999988 79999999876
Q ss_pred CCCCCCceeeccC
Q 015243 161 APKTYPVCTITST 173 (410)
Q Consensus 161 ~~~~~p~cti~~~ 173 (410)
.+...|.|+....
T Consensus 170 ~~~~~~~~~~~~~ 182 (202)
T TIGR02356 170 IADTGPSCATAGV 182 (202)
T ss_pred CcccCCCCccCCc
Confidence 5556677866543
No 11
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=7.5e-37 Score=287.94 Aligned_cols=168 Identities=35% Similarity=0.613 Sum_probs=154.1
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|++.|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.+||+||+||.++|+|++|+++++++++++||+
T Consensus 11 ~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 90 (228)
T cd00757 11 IGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD 90 (228)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~ 161 (410)
++|+.+...+++.. ..++++++|+||+|+|+.++|.+++++|+++++|+|++|+.|+.|++.++.|+.++||.|.....
T Consensus 91 ~~i~~~~~~i~~~~-~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~~~~c~~c~~~~~ 169 (228)
T cd00757 91 VEIEAYNERLDAEN-AEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEP 169 (228)
T ss_pred CEEEEecceeCHHH-HHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCCCCCCccccCCCC
Confidence 99999998885432 35688999999999999999999999999999999999999999999999999999999987644
Q ss_pred CCC-CCceee
Q 015243 162 PKT-YPVCTI 170 (410)
Q Consensus 162 ~~~-~p~cti 170 (410)
+.. .+.|..
T Consensus 170 ~~~~~~~~~~ 179 (228)
T cd00757 170 PPPGVPSCAE 179 (228)
T ss_pred CCCCCCcccc
Confidence 322 244543
No 12
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=4.4e-37 Score=292.11 Aligned_cols=167 Identities=33% Similarity=0.583 Sum_probs=153.4
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.|||+||+||+++|+|++|+++++++++++||+
T Consensus 22 ~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~ 101 (245)
T PRK05690 22 FDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPH 101 (245)
T ss_pred cCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCC-CccccccCCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK-TECYECQPKP 160 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~-t~c~~C~~~~ 160 (410)
++|+++...+++.. ..++++++|+||+|+||.++|.+++++|+++++|+|.+++.|+.|++.++.|+. ++||.|..+.
T Consensus 102 v~i~~~~~~i~~~~-~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~c~~~~ 180 (245)
T PRK05690 102 IAIETINARLDDDE-LAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSRL 180 (245)
T ss_pred CEEEEEeccCCHHH-HHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEecCCCCceeeeccCC
Confidence 99999999886532 357899999999999999999999999999999999999999999999998765 8999999764
Q ss_pred CCCCCCcee
Q 015243 161 APKTYPVCT 169 (410)
Q Consensus 161 ~~~~~p~ct 169 (410)
.+.....|.
T Consensus 181 ~~~~~~~~~ 189 (245)
T PRK05690 181 FGENALTCV 189 (245)
T ss_pred CCCCCCCcc
Confidence 443333454
No 13
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=6.9e-37 Score=294.65 Aligned_cols=177 Identities=20% Similarity=0.455 Sum_probs=162.0
Q ss_pred CCCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP 80 (410)
Q Consensus 1 ~~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np 80 (410)
.+|+++|+||++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+||+|||+|+++|||++|+++++++|+++||
T Consensus 8 ~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp 87 (286)
T cd01491 8 VLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNP 87 (286)
T ss_pred ccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCC
Q 015243 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 160 (410)
Q Consensus 81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~ 160 (410)
+++|+.+...+ +.+++.++|+||+|.|+.+++.++|++|+++++|+|.+++.|+.|++++..+....|+++ .++
T Consensus 88 ~V~V~~~~~~~-----~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~dfg~~f~~~d~-~ge 161 (286)
T cd01491 88 YVPVTVSTGPL-----TTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCDFGDEFTVYDP-NGE 161 (286)
T ss_pred CCEEEEEeccC-----CHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEecCCCeEEEeCC-CCC
Confidence 99999998764 457899999999999999999999999999999999999999999999977655555542 235
Q ss_pred CCCCCCceeeccCCCcchHHHHH
Q 015243 161 APKTYPVCTITSTPSKFVHCIVW 183 (410)
Q Consensus 161 ~~~~~p~cti~~~p~~~~h~i~~ 183 (410)
+|.++++|+|.+.+...+||+.-
T Consensus 162 ~p~~~~i~~I~~~~~g~V~~~~~ 184 (286)
T cd01491 162 EPKSGMISSISKDNPGVVTCLDE 184 (286)
T ss_pred cCCccceeeeecCCceEEEEECC
Confidence 67889999999988889998653
No 14
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=9.1e-37 Score=307.99 Aligned_cols=190 Identities=28% Similarity=0.442 Sum_probs=166.1
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|+|+.|||+||+||+.+|+|++|+++++++++++||+
T Consensus 28 ~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~ 107 (390)
T PRK07411 28 VGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPY 107 (390)
T ss_pred cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~ 161 (410)
++|+++..+++.. ...++++++|+||+|+||.++|.++|++|+++++|++.+++.|+.|++.++.++.++||+|..+..
T Consensus 108 v~v~~~~~~~~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~ 186 (390)
T PRK07411 108 CQVDLYETRLSSE-NALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEP 186 (390)
T ss_pred CeEEEEecccCHH-hHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEECCCCCCChHHhcCCC
Confidence 9999999998754 245789999999999999999999999999999999999999999999988877899999997632
Q ss_pred --CCCCCceeeccCCCcc---hHHHHHHHHHHHHHHhC
Q 015243 162 --PKTYPVCTITSTPSKF---VHCIVWAKDLLFAKLFG 194 (410)
Q Consensus 162 --~~~~p~cti~~~p~~~---~h~i~~a~~~~f~~~f~ 194 (410)
+...|.|......... +-++ -|.+ ..+.+.+
T Consensus 187 ~~~~~~~~c~~~gvlg~~~~~~g~~-~a~e-aik~l~g 222 (390)
T PRK07411 187 PPPGMVPSCAEGGVLGILPGIIGVI-QATE-TIKIILG 222 (390)
T ss_pred CCcccCCCCccCCcCcchHHHHHHH-HHHH-HHHHHcC
Confidence 3445778755433322 2222 2555 4666665
No 15
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=3.1e-36 Score=300.72 Aligned_cols=191 Identities=29% Similarity=0.432 Sum_probs=167.4
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.|||+||+||+++|+|++|+++++++|+++||+
T Consensus 18 ~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~ 97 (355)
T PRK05597 18 IGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD 97 (355)
T ss_pred cCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~ 161 (410)
++|+++..+++.. ...++++++|+||+|+||.++|..+|+.|+++++|+|.+++.|+.|++.++.|+.++||+|..+..
T Consensus 98 v~v~~~~~~i~~~-~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~~~~~~~~~~~~~~~~ 176 (355)
T PRK05597 98 VKVTVSVRRLTWS-NALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTP 176 (355)
T ss_pred cEEEEEEeecCHH-HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEEcCCCCCCHHHhCCCC
Confidence 9999999888653 235789999999999999999999999999999999999999999999999888899999997533
Q ss_pred --CCCCCceeeccCCCc--chHHHHHHHHHHHHHHhC
Q 015243 162 --PKTYPVCTITSTPSK--FVHCIVWAKDLLFAKLFG 194 (410)
Q Consensus 162 --~~~~p~cti~~~p~~--~~h~i~~a~~~~f~~~f~ 194 (410)
+...|.|+....... ......-|.| ..+.+.+
T Consensus 177 ~~~~~~~~c~~~gv~g~~~~~~g~~~a~e-~ik~l~g 212 (355)
T PRK05597 177 PPPGSVPSCSQAGVLGPVVGVVGSAMAME-ALKLITG 212 (355)
T ss_pred CCccCCCCccccCcchhHHHHHHHHHHHH-HHHHHhC
Confidence 346678876554332 2222233555 5666665
No 16
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=6.1e-36 Score=283.20 Aligned_cols=157 Identities=34% Similarity=0.658 Sum_probs=146.9
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|+++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.+||+||+||.++|+|++|+++++++++++||+
T Consensus 14 ~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~ 93 (240)
T TIGR02355 14 FDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPH 93 (240)
T ss_pred CCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCC
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEe-CCCCccccccCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV-KGKTECYECQPK 159 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~-~~~t~c~~C~~~ 159 (410)
++|+++...+++.. ..++++++|+||+|+||.++|.+++++|+++++|+|.+++.|+.|++.++. +..++||.|..+
T Consensus 94 v~i~~~~~~i~~~~-~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~C~~~ 171 (240)
T TIGR02355 94 IAINPINAKLDDAE-LAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSR 171 (240)
T ss_pred cEEEEEeccCCHHH-HHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEecCCCCCccccccc
Confidence 99999998886532 457899999999999999999999999999999999999999999988765 456899999854
No 17
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-36 Score=281.77 Aligned_cols=159 Identities=31% Similarity=0.431 Sum_probs=150.6
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCc-hHHHHHHHHHHhhCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRP 80 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~-~Ka~~a~~~l~~~np 80 (410)
+|.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.|||+||++|+++|+|+ +|+++++++++++||
T Consensus 17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np 96 (231)
T PRK08328 17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNS 96 (231)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999 599999999999999
Q ss_pred CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCC
Q 015243 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 160 (410)
Q Consensus 81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~ 160 (410)
+++|+++...+++.. ..++++++|+||+|+||.++|..++++|+++++|+|++++.|+.|++.++.|+.++||+|..+.
T Consensus 97 ~v~v~~~~~~~~~~~-~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~p~~~~c~~~~~~~ 175 (231)
T PRK08328 97 DIKIETFVGRLSEEN-IDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPK 175 (231)
T ss_pred CCEEEEEeccCCHHH-HHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEECCCCCCCHHHhCCC
Confidence 999999998886544 3568999999999999999999999999999999999999999999999999999999999764
Q ss_pred C
Q 015243 161 A 161 (410)
Q Consensus 161 ~ 161 (410)
.
T Consensus 176 ~ 176 (231)
T PRK08328 176 V 176 (231)
T ss_pred C
Confidence 3
No 18
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=2.2e-35 Score=298.42 Aligned_cols=170 Identities=33% Similarity=0.523 Sum_probs=155.2
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.+||+||++|+.+|||++|+++++++|+++||+
T Consensus 32 ~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~ 111 (392)
T PRK07878 32 VGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPL 111 (392)
T ss_pred cCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeC----CCCcccccc
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVK----GKTECYECQ 157 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~----~~t~c~~C~ 157 (410)
++|+++..+++.. ...++++++|+||+|+||..+|.++|++|+++++|+|.+++.|+.|++.++.+ +.++||+|.
T Consensus 112 v~i~~~~~~i~~~-~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~ 190 (392)
T PRK07878 112 VNVRLHEFRLDPS-NAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDL 190 (392)
T ss_pred cEEEEEeccCChh-HHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEecCCCCCCCCeeeee
Confidence 9999999888654 34578999999999999999999999999999999999999999999998864 368999999
Q ss_pred CCCCC--CCCCceeecc
Q 015243 158 PKPAP--KTYPVCTITS 172 (410)
Q Consensus 158 ~~~~~--~~~p~cti~~ 172 (410)
.+..+ ...|.|.-..
T Consensus 191 ~~~~~~~~~~~~~~~~g 207 (392)
T PRK07878 191 YPEPPPPGMVPSCAEGG 207 (392)
T ss_pred cCCCCCccCCCCCccCC
Confidence 76432 3457776443
No 19
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=6.9e-35 Score=288.77 Aligned_cols=170 Identities=27% Similarity=0.452 Sum_probs=155.6
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCC--chHHHHHHHHHHhhC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFR 79 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG--~~Ka~~a~~~l~~~n 79 (410)
+|+++|++|++++|+|||+||+||+++++|+++|||+|+|+|.|.||.|||+||+||+++|+| ++|+++++++++++|
T Consensus 14 ~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~in 93 (338)
T PRK12475 14 IGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKIN 93 (338)
T ss_pred cCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHC
Confidence 699999999999999999999999999999999999999999999999999999999999985 899999999999999
Q ss_pred CCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (410)
Q Consensus 80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~ 159 (410)
|+++|+++..+++.. ...++++++|+||+|+||.++|..+|++|+++++|+|.+++.|+.|++.++.|+.++||.|..+
T Consensus 94 p~v~i~~~~~~~~~~-~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~ 172 (338)
T PRK12475 94 SEVEIVPVVTDVTVE-ELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLME 172 (338)
T ss_pred CCcEEEEEeccCCHH-HHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEECCCCCCCHHHhcC
Confidence 999999998888643 2356789999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCceeecc
Q 015243 160 PAPKTYPVCTITS 172 (410)
Q Consensus 160 ~~~~~~p~cti~~ 172 (410)
..|...+.|....
T Consensus 173 ~~p~~~~~c~~~G 185 (338)
T PRK12475 173 HVPVGGATCDTAG 185 (338)
T ss_pred CCCCCCCCCccCC
Confidence 5444445675443
No 20
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.4e-34 Score=289.74 Aligned_cols=191 Identities=28% Similarity=0.455 Sum_probs=164.2
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|+++|++|++++|+|+|+||+||+++++|+++|||+|+|+|.|.|+.|||+||+||+++|+|++|+++++++++++||+
T Consensus 31 ~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~ 110 (370)
T PRK05600 31 FGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPD 110 (370)
T ss_pred hCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCC---CCccccccC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG---KTECYECQP 158 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~---~t~c~~C~~ 158 (410)
++|+++..++++.. ..++++++|+||+|+||.++|.++|+.|+++++|+|.+++.|+.|++.++.|+ .++||+|.+
T Consensus 111 v~i~~~~~~i~~~~-~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~~~~~~~~~~~~~l~ 189 (370)
T PRK05600 111 IRVNALRERLTAEN-AVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLF 189 (370)
T ss_pred CeeEEeeeecCHHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEecCCCCCCCCcHhhC
Confidence 99999999987543 45789999999999999999999999999999999999999999999988765 378999997
Q ss_pred CCC--CCCCCceeeccCCCc--chHHHHHHHHHHHHHHhC
Q 015243 159 KPA--PKTYPVCTITSTPSK--FVHCIVWAKDLLFAKLFG 194 (410)
Q Consensus 159 ~~~--~~~~p~cti~~~p~~--~~h~i~~a~~~~f~~~f~ 194 (410)
+.. +...|.|+....... .+....-|.+ ..+.+.+
T Consensus 190 ~~~~~~~~~~~c~~~gvlg~~~~~ig~~~a~e-aik~l~g 228 (370)
T PRK05600 190 PEQPSGDSIPDCATAGVLGATTAVIGALMATE-AIKFLTG 228 (370)
T ss_pred CCCCccccCCCCccCCcchhHHHHHHHHHHHH-HHHHHhC
Confidence 643 234577854432221 1222233555 5666665
No 21
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=1e-34 Score=267.16 Aligned_cols=143 Identities=26% Similarity=0.490 Sum_probs=137.4
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|+++|++|++++|+|+|+||+|||++|+|+++||++|+|+|+|.|+.+||+|||||+.+|+|++|+++++++++++||+
T Consensus 11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~ 90 (197)
T cd01492 11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR 90 (197)
T ss_pred hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEE
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH 146 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~ 146 (410)
++|+.+...+++ ...++++++|+||+|+|+.++|.+++++|+++++|++.+++.|+.|+++.+
T Consensus 91 v~i~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d 153 (197)
T cd01492 91 VKVSVDTDDISE--KPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFAD 153 (197)
T ss_pred CEEEEEecCccc--cHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEe
Confidence 999999888863 357899999999999999999999999999999999999999999998865
No 22
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=1.6e-34 Score=286.19 Aligned_cols=168 Identities=25% Similarity=0.422 Sum_probs=155.0
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCC--chHHHHHHHHHHhhC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVG--QSKAKVARDAVLKFR 79 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG--~~Ka~~a~~~l~~~n 79 (410)
+|+++|++|++++|+||||||+||+++++|+++|||+|+|+|.|.|+.+||+||+||+++|+| ++|+++++++++++|
T Consensus 14 ~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~in 93 (339)
T PRK07688 14 IGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEIN 93 (339)
T ss_pred cCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHC
Confidence 799999999999999999999999999999999999999999999999999999999999994 699999999999999
Q ss_pred CCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (410)
Q Consensus 80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~ 159 (410)
|+++++++..++++.+ ..++++++|+||+|+||+++|..+|++|+++++|+|.+++.|+.|++.++.|+.++||.|..+
T Consensus 94 p~v~v~~~~~~~~~~~-~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~~p~~~pC~~Cl~~ 172 (339)
T PRK07688 94 SDVRVEAIVQDVTAEE-LEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTIIPGKTPCLRCLLQ 172 (339)
T ss_pred CCcEEEEEeccCCHHH-HHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEECCCCCCCeEeecC
Confidence 9999999998886543 346789999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCceee
Q 015243 160 PAPKTYPVCTI 170 (410)
Q Consensus 160 ~~~~~~p~cti 170 (410)
..+...+.|.-
T Consensus 173 ~~~~~~~~c~~ 183 (339)
T PRK07688 173 SIPLGGATCDT 183 (339)
T ss_pred CCCCCCCCCcc
Confidence 55544466753
No 23
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=3.5e-34 Score=263.97 Aligned_cols=146 Identities=23% Similarity=0.495 Sum_probs=137.5
Q ss_pred CCCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCC--CCCCchHHHHHHHHHHhh
Q 015243 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQ--SHVGQSKAKVARDAVLKF 78 (410)
Q Consensus 1 ~~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~--~diG~~Ka~~a~~~l~~~ 78 (410)
.+|+++|++|++++|+|+|+||+|||++|+|+++||++|+|+|+|.|+.+||+|||||++ +|+|++|+++++++|+++
T Consensus 8 l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l 87 (198)
T cd01485 8 LWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL 87 (198)
T ss_pred ccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred CCCCeEEEEccCCCC-CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEE
Q 015243 79 RPQMSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH 146 (410)
Q Consensus 79 np~v~i~~~~~~i~~-~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~ 146 (410)
||+++|+++...+.+ .....++++++|+||+|.|+.+++.+++++|+++++|++.+++.|+.|+++++
T Consensus 88 Np~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~ 156 (198)
T cd01485 88 NPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFD 156 (198)
T ss_pred CCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEc
Confidence 999999999887742 23456889999999999999999999999999999999999999999998865
No 24
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=100.00 E-value=1.7e-33 Score=291.71 Aligned_cols=238 Identities=21% Similarity=0.287 Sum_probs=185.4
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCC---CchHHHHHHHHHHhh
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLKF 78 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~di---G~~Ka~~a~~~l~~~ 78 (410)
+++-+.++|++++|+||||||+||+++++|+++|||+|+|+|+|+|+.|||+||+||+.+|+ |++||++|+++|+++
T Consensus 328 lP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~I 407 (664)
T TIGR01381 328 HPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRI 407 (664)
T ss_pred CChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHH
Confidence 56667799999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CCCCeEEEEccCC-------CCC---------cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccce
Q 015243 79 RPQMSITAHHANV-------KDP---------KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQ 142 (410)
Q Consensus 79 np~v~i~~~~~~i-------~~~---------~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~ 142 (410)
||+++++++..++ ++. ....++++++|+|++|+||.++|..++.+|..+++|+|+++ .|+.|+
T Consensus 408 nP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg~ 486 (664)
T TIGR01381 408 FPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDSY 486 (664)
T ss_pred CCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccceE
Confidence 9999999998774 321 12346889999999999999999999999999999999985 899999
Q ss_pred EEEEeC------------------CCCccccccC---CCCCCCC----CceeeccCCCcchHHHHHHHHHHHHHHhCCCC
Q 015243 143 VTVHVK------------------GKTECYECQP---KPAPKTY----PVCTITSTPSKFVHCIVWAKDLLFAKLFGDKN 197 (410)
Q Consensus 143 v~~~~~------------------~~t~c~~C~~---~~~~~~~----p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~ 197 (410)
+....+ ...+||.|.. +.++... ..||+.. |....-+-..|.|+ +..+...+.
T Consensus 487 lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~~~rtlDqqCtVtr-Pgv~~ias~~AvEl-l~~llqhp~ 564 (664)
T TIGR01381 487 VVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDSTTDRTLDQQCTVTR-PGTAMIASGLAVEL-LVSVLQHPL 564 (664)
T ss_pred EEEEecccccccccccccccccCCCCCCccccCCCCCCCcccccccccccceEec-chHHHHHHHHHHHH-HHHHhcCCc
Confidence 887622 2578999993 3333333 6899654 55445555678884 555433221
Q ss_pred cc-c--ccc-ccCccccchhhHHhhhh--------cCCcccHHHHHHHHHHhhhccc
Q 015243 198 QE-N--DLN-VRSSDASSSAHAEDVFV--------RRKDEDIDQYGRRIYDHVFGYN 242 (410)
Q Consensus 198 ~~-~--~~~-~~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~f~~~F~~~ 242 (410)
.. . ... ........+++++.++. ...++.|+.+...+..+|-.+.
T Consensus 565 ~~~ap~~~~~~~~~lG~~Phqirg~l~~f~~~~~~~~~~~~C~aCs~~v~~~y~~~g 621 (664)
T TIGR01381 565 PSKTPASHDDNTTVLGALPHQIRGFLGRFQQILLSVKRFDQCVACSDAVAAEYQQRG 621 (664)
T ss_pred ccCCCCcCCCCCCccccCCceeeeehhhCeeeeecccCCCcccCCCHHHHHHHHhcc
Confidence 11 0 001 01222336777776653 2467899999888887766654
No 25
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-33 Score=267.75 Aligned_cols=161 Identities=41% Similarity=0.711 Sum_probs=152.8
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|.++|++|+.++|+|+|+||+||+++++|+++|+|+++|+|.|+|+.+||+||++|+.+|+|++|++++++.++++||.
T Consensus 20 ~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~ 99 (254)
T COG0476 20 IGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPL 99 (254)
T ss_pred cCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHHHHHHHhCCC
Confidence 46677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCC-CCccccccCCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG-KTECYECQPKP 160 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~-~t~c~~C~~~~ 160 (410)
++++++...++.... .+++.++|+|++|+||.++|..+|+.|++.++|++++++.|+.|++.++.|+ .++||+|..+.
T Consensus 100 v~v~~~~~~l~~~~~-~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~~~~~~~~~c~~~~~~~ 178 (254)
T COG0476 100 VEVVAYLERLDEENA-EELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPE 178 (254)
T ss_pred CeEEEeecccChhhH-HHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEEEecCCCCCcccccCCC
Confidence 999999999877655 7899999999999999999999999999999999999999999999999999 59999999775
Q ss_pred CCC
Q 015243 161 APK 163 (410)
Q Consensus 161 ~~~ 163 (410)
.+.
T Consensus 179 ~~~ 181 (254)
T COG0476 179 KPP 181 (254)
T ss_pred CCC
Confidence 543
No 26
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=5.1e-33 Score=280.19 Aligned_cols=191 Identities=30% Similarity=0.510 Sum_probs=164.8
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+||+||+||+++|||++|+++++++++++||+
T Consensus 125 ~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~ 204 (376)
T PRK08762 125 VGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD 204 (376)
T ss_pred cCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCC----Ccccccc
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK----TECYECQ 157 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~----t~c~~C~ 157 (410)
++++.+...+++.. ..++++++|+||+|+|+.++|.+++++|+++++|+|.+++.|+.|++.++.|+. ++||+|.
T Consensus 205 v~v~~~~~~~~~~~-~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~p~~~~~~~~c~~c~ 283 (376)
T PRK08762 205 VQVEAVQERVTSDN-VEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCL 283 (376)
T ss_pred CEEEEEeccCChHH-HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEeCCCCCCCCCCHhhc
Confidence 99999988886532 346789999999999999999999999999999999999999999999998876 8999998
Q ss_pred CCCC--CCCCCceeeccCCCcc--hHHHHHHHHHHHHHHhC
Q 015243 158 PKPA--PKTYPVCTITSTPSKF--VHCIVWAKDLLFAKLFG 194 (410)
Q Consensus 158 ~~~~--~~~~p~cti~~~p~~~--~h~i~~a~~~~f~~~f~ 194 (410)
.+.. +...|.|......... +-...-|.| ..+.+.+
T Consensus 284 ~~~~~~~~~~~~~~~~gv~g~~~~~~~~~~a~e-~~k~l~g 323 (376)
T PRK08762 284 FPEPPPPELAPSCAEAGVLGVLPGVIGLLQATE-AIKLLLG 323 (376)
T ss_pred CCCCCCcccCCCCccCCcchhhHHHHHHHHHHH-HHHHHhC
Confidence 6532 2335778765443222 122234555 5676765
No 27
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=100.00 E-value=6.1e-33 Score=266.02 Aligned_cols=227 Identities=21% Similarity=0.286 Sum_probs=175.9
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCC--CCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSH--VGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~d--iG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
||+|+|+||+||+++++|+++|||+|+|+|+|.|+.+||+||+||+.+| +|++|+++++++|+++||+++++++...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999999987665
Q ss_pred C----------------CCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCC------
Q 015243 92 K----------------DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKG------ 149 (410)
Q Consensus 92 ~----------------~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~------ 149 (410)
. +.....++++++|+|++|+||.++|+.++.+|..+++|+|++ ..|+.|++....+.
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lvmrhg~~~~~~~ 159 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLVMRHGAGPQSQS 159 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEEEEeCCCccccc
Confidence 1 111235788999999999999999999999999999999985 67999998776432
Q ss_pred -------------CCccccccCCCCCCC-------CCceeeccCCCcchHHHHHHHHHHHHHHhCCCCccc--cc-----
Q 015243 150 -------------KTECYECQPKPAPKT-------YPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQEN--DL----- 202 (410)
Q Consensus 150 -------------~t~c~~C~~~~~~~~-------~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~~~~~--~~----- 202 (410)
...||.|..--.|.. -.+||++. |.-.--+-..|.|++-..+++...... ..
T Consensus 160 ~~~~~~~~~~~~~~lgCYfCnDv~ap~~s~~drtlDqqctvtr-pG~a~ias~~avEl~~s~lqhp~~~~a~~~~~~~~~ 238 (307)
T cd01486 160 GSGDSSSDSIPGSRLGCYFCNDVVAPGDSLKDRTLDQQCTVTR-PGLSMIASSIAVELLVSLLQHPLGGHAPAESSSNEG 238 (307)
T ss_pred ccccccccccCCCCcceeeeCCEecCCCCCCCcccCcccceec-CchHHHHHHHHHHHHHHHHcCCCccCCCCccccccC
Confidence 478999986533321 26799876 555555567899965555554221110 00
Q ss_pred -cccCccccchhhHHhhhh--------cCCcccHHHHHHHHHHhhhccc
Q 015243 203 -NVRSSDASSSAHAEDVFV--------RRKDEDIDQYGRRIYDHVFGYN 242 (410)
Q Consensus 203 -~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~f~~~F~~~ 242 (410)
.........+++++.++. ...++.|..+...+.++|-.+.
T Consensus 239 ~~~~~~lg~~Phqirg~l~~~~~~~~~~~~~~~C~aCs~~v~~~y~~~g 287 (307)
T cd01486 239 DEPTTVLGILPHQIRGFLSNFSNLTLSGQAYDQCTACSDAVIDEYHREG 287 (307)
T ss_pred CCCCCcCccCCeeeeeehhhCeeeeecccCCCccccCCHHHHHHHHhcc
Confidence 011122236777776653 2457899998888888776655
No 28
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=2.9e-31 Score=268.90 Aligned_cols=157 Identities=23% Similarity=0.396 Sum_probs=144.8
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
.|.++|++|++++|+|+|+||+|||++|||+++|||+|+|+|+|.|+.+||+|||+++.+|+|++||+++++.|+++||+
T Consensus 10 wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~ 89 (425)
T cd01493 10 WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPD 89 (425)
T ss_pred hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243 82 MSITAHHANVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (410)
Q Consensus 82 v~i~~~~~~i~~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~ 159 (410)
++++.+...+.+. ..+.+|++++|+||++.++...+..++++|+++++|+|.+++.|+.|++++..|. +.+.++.++
T Consensus 90 V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~-h~i~et~p~ 167 (425)
T cd01493 90 VNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKE-HTIVESHPD 167 (425)
T ss_pred CEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECC-eEEEECCCC
Confidence 9999998877432 2346899999999999999999999999999999999999999999999999985 446666544
No 29
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.98 E-value=5.2e-32 Score=255.03 Aligned_cols=179 Identities=25% Similarity=0.331 Sum_probs=151.4
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCC-----C-----cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGF-----Q-----DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR 79 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv-----~-----~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n 79 (410)
-+..+|+||||||+||+++++|+++|+ | +|+|+|+|+|+.|||+|| +|..+|||++|++++++++.+++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 378999999999999999999999973 4 899999999999999999 57889999999999999999988
Q ss_pred CCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--C-CCcEEEecc--------cCc-----cceE
Q 015243 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--A-DVPLVESGT--------TGF-----LGQV 143 (410)
Q Consensus 80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~-~~p~i~~g~--------~G~-----~G~v 143 (410)
+++++++...+.+ ..++.++|+||+|+||.++|.++++.|.+ + .+||+++|+ .|. +|+.
T Consensus 88 -~~~i~a~~~~~~~----~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~ 162 (244)
T TIGR03736 88 -GTDWTAHPERVER----SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQVPSRAKGEN 162 (244)
T ss_pred -CceEEEEEeeeCc----hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEecccccccCC
Confidence 8999999988865 24467899999999999999999999988 3 489999998 455 6777
Q ss_pred EEEeCCCCccccccCCC---CCCCCCceeeccCCCcc-----hHHHHHHHHHHHHHHhC
Q 015243 144 TVHVKGKTECYECQPKP---APKTYPVCTITSTPSKF-----VHCIVWAKDLLFAKLFG 194 (410)
Q Consensus 144 ~~~~~~~t~c~~C~~~~---~~~~~p~cti~~~p~~~-----~h~i~~a~~~~f~~~f~ 194 (410)
.+++|+.|+||.|..++ ++.+.|+||+...-... .....+|..+||+.+..
T Consensus 163 ~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~~ 221 (244)
T TIGR03736 163 RLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFRK 221 (244)
T ss_pred ceecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHhc
Confidence 78889999999998776 66789999987533321 22355778877876643
No 30
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.98 E-value=5.1e-33 Score=264.72 Aligned_cols=167 Identities=29% Similarity=0.529 Sum_probs=155.7
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
||..+|.+|++++|+||||||+||..+..|+.+|+|+|-|+|.|.||.+||.||.+++++.+|+.|+++|+..++++||+
T Consensus 56 ~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~ 135 (427)
T KOG2017|consen 56 FGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSH 135 (427)
T ss_pred cccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~ 161 (410)
++|..|...++..+ ..+++++||+|++|+||+.+|+.+++.|+..++|++.+...++.||+.+..-...|||+|.++.+
T Consensus 136 v~v~~y~~~L~~sN-a~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvYny~~GPCYRClFP~P 214 (427)
T KOG2017|consen 136 VEVQTYNEFLSSSN-AFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVYNYNNGPCYRCLFPNP 214 (427)
T ss_pred ceeeechhhccchh-HHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEeecCCCceeeecCCCC
Confidence 99999999886543 45789999999999999999999999999999999999999999999999778899999997643
Q ss_pred C--CCCCcee
Q 015243 162 P--KTYPVCT 169 (410)
Q Consensus 162 ~--~~~p~ct 169 (410)
| .....|.
T Consensus 215 pp~~~vt~C~ 224 (427)
T KOG2017|consen 215 PPPEAVTNCA 224 (427)
T ss_pred cChHHhcccc
Confidence 3 3566676
No 31
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.98 E-value=6.9e-32 Score=253.45 Aligned_cols=139 Identities=27% Similarity=0.396 Sum_probs=129.2
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|+++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+|||||+++..+|+|++|+++++++++++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCcc
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL 140 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~ 140 (410)
++|+.+...+++.+....+..++|+||+|.|+.+++..++++|+++++|+|.++..|..
T Consensus 81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~ 139 (231)
T cd00755 81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGK 139 (231)
T ss_pred cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCC
Confidence 99999998887554444444579999999999999999999999999999998766654
No 32
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.98 E-value=1.1e-31 Score=232.78 Aligned_cols=134 Identities=36% Similarity=0.707 Sum_probs=123.0
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
+++||+|+|+||+||+++++|+++|+++|+|+|+|.|+++||+||++|+.+|+|++|+++++++++++||+++++++..+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEE
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTV 145 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~ 145 (410)
+++. ...++++++|+||+|+|+.+++.+++++|+++++|+|++++.|+.|+++.
T Consensus 81 ~~~~-~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDEE-NIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSHH-HHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred cccc-cccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 8543 34577899999999999999999999999999999999999999999854
No 33
>PRK14851 hypothetical protein; Provisional
Probab=99.97 E-value=1.1e-31 Score=285.56 Aligned_cols=158 Identities=27% Similarity=0.437 Sum_probs=148.1
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|++.|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.||||||++|+.+|||++|+++++++++++||+
T Consensus 33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~ 112 (679)
T PRK14851 33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPF 112 (679)
T ss_pred cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCC--hHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~ 159 (410)
++|+++...+++.+ ..+|++++|+||+|+|+ .++|.++++.|+++++|+|.+++.|+.|++.++.|+ +.|+.|.++
T Consensus 113 ~~I~~~~~~i~~~n-~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~-~~~~~~~~~ 190 (679)
T PRK14851 113 LEITPFPAGINADN-MDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ-GMGFDDYFN 190 (679)
T ss_pred CeEEEEecCCChHH-HHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC-CCCHhHhcc
Confidence 99999999997543 35789999999999997 468999999999999999999999999999999887 788888765
Q ss_pred CC
Q 015243 160 PA 161 (410)
Q Consensus 160 ~~ 161 (410)
-.
T Consensus 191 ~~ 192 (679)
T PRK14851 191 IG 192 (679)
T ss_pred CC
Confidence 43
No 34
>PRK14852 hypothetical protein; Provisional
Probab=99.97 E-value=1.7e-31 Score=288.10 Aligned_cols=158 Identities=24% Similarity=0.402 Sum_probs=147.7
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.||||||++|+.+|||++|+++++++++++||+
T Consensus 322 ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~ 401 (989)
T PRK14852 322 VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPF 401 (989)
T ss_pred cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCCh--HHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~--~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~ 159 (410)
++|+.+...+++++ .++|++++|+||+|+|+. +++.++++.|+++++|+|.+++.|+.|++.++.|+. .|+.|.++
T Consensus 402 v~I~~~~~~I~~en-~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p~~-~~~~~~f~ 479 (989)
T PRK14852 402 LDIRSFPEGVAAET-IDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMPGG-MNFDSYFG 479 (989)
T ss_pred CeEEEEecCCCHHH-HHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcCCC-CCHHHhCC
Confidence 99999999986654 468999999999999984 578888999999999999999999999999998764 99999876
Q ss_pred CC
Q 015243 160 PA 161 (410)
Q Consensus 160 ~~ 161 (410)
-+
T Consensus 480 ~~ 481 (989)
T PRK14852 480 ID 481 (989)
T ss_pred CC
Confidence 43
No 35
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.97 E-value=8.2e-31 Score=243.85 Aligned_cols=153 Identities=29% Similarity=0.481 Sum_probs=136.3
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|+++|++|++++|+|+|+||+||+++++|+++|+++|+|+|.|.|+.+||+||+++ .+|+|++|+++++++++++||+
T Consensus 18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~lnp~ 96 (212)
T PRK08644 18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEINPF 96 (212)
T ss_pred cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHHHHHHCCC
Confidence 699999999999999999999999999999999999999999999999999999976 7899999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHC-CCcEEEecccCccceEEEEeCCC--Cccccc
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYEC 156 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~-~~p~i~~g~~G~~G~v~~~~~~~--t~c~~C 156 (410)
++++.+...+++.. ..++++++|+||+|+||.++|..+++.|+++ ++|+|.++..|..|++..+.+.. ..||.|
T Consensus 97 v~v~~~~~~i~~~~-~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (212)
T PRK08644 97 VEIEAHNEKIDEDN-IEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSIKTRRIGKNFYIV 173 (212)
T ss_pred CEEEEEeeecCHHH-HHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEEEecCCCCCeeEC
Confidence 99999998886542 3478899999999999999999999999998 99999986666667766554433 445543
No 36
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.97 E-value=2.1e-30 Score=226.77 Aligned_cols=133 Identities=38% Similarity=0.682 Sum_probs=126.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 93 (410)
+|+|+|+||+||+++++|+++|+++|+|+|+|.|+++||+||++++.+|+|++|+++++++++++||+++++.+...+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999988865
Q ss_pred CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEe
Q 015243 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHV 147 (410)
Q Consensus 94 ~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~ 147 (410)
.. ..++++++|+||+|.|+.++|..++++|+++++|++++++.|+.|+++++.
T Consensus 81 ~~-~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 DN-LDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred hh-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 43 267889999999999999999999999999999999999999999999886
No 37
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.96 E-value=1.4e-29 Score=241.81 Aligned_cols=137 Identities=27% Similarity=0.468 Sum_probs=125.7
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|+++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+.+|+|||+++..+|+|++|+++++++++++||+
T Consensus 20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~ 99 (268)
T PRK15116 20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPE 99 (268)
T ss_pred hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G 138 (410)
++|+.+...++.+.....+..++|+||+|.|+..++..++++|+++++|+|.+|..|
T Consensus 100 ~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag 156 (268)
T PRK15116 100 CRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG 156 (268)
T ss_pred cEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 999999877764443333335799999999999999999999999999999886444
No 38
>PRK07877 hypothetical protein; Provisional
Probab=99.96 E-value=1.7e-29 Score=269.52 Aligned_cols=154 Identities=21% Similarity=0.353 Sum_probs=140.3
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP 80 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np 80 (410)
||+++|++|++++|+|||+| +||.++.+|+++|| |+|+|+|+|.||.|||||| +|+.+|+|++|+++++++++++||
T Consensus 97 ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp 174 (722)
T PRK07877 97 ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDP 174 (722)
T ss_pred CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCC
Confidence 79999999999999999997 99999999999996 9999999999999999999 589999999999999999999999
Q ss_pred CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEE---EEeCCCCcccccc
Q 015243 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVT---VHVKGKTECYECQ 157 (410)
Q Consensus 81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~---~~~~~~t~c~~C~ 157 (410)
+++|+++...+++++ ..+|++++|+||+|+||+++|..+|+.|+++++|+|.++..+ |++. +.+...++||.|.
T Consensus 175 ~i~v~~~~~~i~~~n-~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~~e~~~~~p~~pc~~cl 251 (722)
T PRK07877 175 YLPVEVFTDGLTEDN-VDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLLDVERFDLEPDRPILHGL 251 (722)
T ss_pred CCEEEEEeccCCHHH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcCcceeeeCCCCceeecc
Confidence 999999999998654 457899999999999999999999999999999999988544 7763 2234479999999
Q ss_pred CCC
Q 015243 158 PKP 160 (410)
Q Consensus 158 ~~~ 160 (410)
.+.
T Consensus 252 ~~~ 254 (722)
T PRK07877 252 LGD 254 (722)
T ss_pred CCC
Confidence 764
No 39
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.96 E-value=3.9e-29 Score=225.80 Aligned_cols=142 Identities=26% Similarity=0.437 Sum_probs=129.1
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 93 (410)
||+|+|+||+||+++++|+++|+++++|+|.|.|+.+||+||++ ..+|+|++|+++++++++++||+++++++..++++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 69999999999999999999999999999999999999999995 57899999999999999999999999999988865
Q ss_pred CcchHhhhccCcEEEEccCChHHHHHHHHHHHHC-CCcEEEecccCccceEEEEeCCC--Ccccccc
Q 015243 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVESGTTGFLGQVTVHVKGK--TECYECQ 157 (410)
Q Consensus 94 ~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~-~~p~i~~g~~G~~G~v~~~~~~~--t~c~~C~ 157 (410)
. ...++++++|+||+|+||.++|..+++.|.++ ++|+|.++..|..|++..+.++. .+||.|.
T Consensus 80 ~-~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 80 N-NLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred h-hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 3 24578999999999999999999888877776 99999998889999998876654 5799998
No 40
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.96 E-value=2.8e-29 Score=276.61 Aligned_cols=150 Identities=19% Similarity=0.467 Sum_probs=140.5
Q ss_pred CCCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC
Q 015243 1 MVSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP 80 (410)
Q Consensus 1 ~~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np 80 (410)
.+|.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+||||++++|||++|+++++++|+++||
T Consensus 13 l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp 92 (1008)
T TIGR01408 13 VLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNP 92 (1008)
T ss_pred hcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCC--CcEEEecccCccceEEEEeCCCCcccc
Q 015243 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD--VPLVESGTTGFLGQVTVHVKGKTECYE 155 (410)
Q Consensus 81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~--~p~i~~g~~G~~G~v~~~~~~~t~c~~ 155 (410)
.++|+.+...++ .+++++||+||+|.++.+.+..+|++|++++ +|+|.+++.|+.|++++..+....|.+
T Consensus 93 ~V~V~~~~~~l~-----~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D~g~~f~~~d 164 (1008)
T TIGR01408 93 YVHVSSSSVPFN-----EEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCDFGDEFEVLD 164 (1008)
T ss_pred CceEEEecccCC-----HHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEecCCCceEEEe
Confidence 999999987663 4789999999999999999999999999999 999999999999999987765444444
No 41
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.96 E-value=1e-28 Score=226.82 Aligned_cols=137 Identities=29% Similarity=0.491 Sum_probs=129.7
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|+++.++|++++|+|+|+||+||.++..|+|+|+|+|+|||+|.|+.+|+|||.--...+||++|+++++++++.+||+
T Consensus 20 ~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~ 99 (263)
T COG1179 20 YGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPE 99 (263)
T ss_pred cChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCC
Confidence 79999999999999999999999999999999999999999999999999999987677899999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G 138 (410)
++|.++...+++++..+-+..++|+||+|.|++.++..+-.+|+++++|+|.++..|
T Consensus 100 c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag 156 (263)
T COG1179 100 CEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG 156 (263)
T ss_pred ceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence 999999999998877766777899999999999999999999999999999987443
No 42
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.95 E-value=7.7e-28 Score=221.89 Aligned_cols=153 Identities=24% Similarity=0.426 Sum_probs=127.5
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|++.|++|++++|+|+|+||+||+++++|+++|+++++|+|.|.|+.+||+||+ |..+|+|++|++++++.++++||.
T Consensus 11 ~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 11 HTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEINPY 89 (200)
T ss_pred cCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHCCC
Confidence 6899999999999999999999999999999999999999999999999999997 577899999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH-HHCCC-cEEEecccCccceE--EEEeC--CCCcccc
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC-LAADV-PLVESGTTGFLGQV--TVHVK--GKTECYE 155 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c-~~~~~-p~i~~g~~G~~G~v--~~~~~--~~t~c~~ 155 (410)
++++++...+++.. ..++++++|+||+|+||.++|..+.+.| ..++. +++.+ .|..|+. ..+.+ ....||.
T Consensus 90 ~~i~~~~~~i~~~~-~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~--~g~~g~~~~~~~~~~~~~~~~~~ 166 (200)
T TIGR02354 90 TEIEAYDEKITEEN-IDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA--SGLAGYDDANSIKTRKISKHFYL 166 (200)
T ss_pred CEEEEeeeeCCHhH-HHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE--eccccCCCCceEEecccCCCEEE
Confidence 99999999887643 3567899999999999999998876555 44444 44553 3444443 33322 2356899
Q ss_pred ccC
Q 015243 156 CQP 158 (410)
Q Consensus 156 C~~ 158 (410)
|..
T Consensus 167 ~~~ 169 (200)
T TIGR02354 167 CGD 169 (200)
T ss_pred cCC
Confidence 843
No 43
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.95 E-value=7.6e-28 Score=236.38 Aligned_cols=140 Identities=16% Similarity=0.235 Sum_probs=132.5
Q ss_pred HHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCe
Q 015243 4 ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS 83 (410)
Q Consensus 4 ~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~ 83 (410)
+++|++|++++|+ |||+|+.++..|+. |||+|+|+|.|.|+.|||+ +||+++|||++|+++|++++.++||+++
T Consensus 68 ~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K~~~a~~~L~~lnp~v~ 141 (318)
T TIGR03603 68 EDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKDIRDLTSNLDALELTKN 141 (318)
T ss_pred HHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHHHHHHHHHHHHhCCCCE
Confidence 5589999999999 99999999999999 9999999999999999999 8999999999999999999999999999
Q ss_pred EEEEccCCCCCcchHhhhccCcEEEEccCChHHHHH--HHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCC
Q 015243 84 ITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRH--VNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPK 159 (410)
Q Consensus 84 i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~--i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~ 159 (410)
++.. .++++++|+|++|+||+.+|.. +|+.|++.++|||.++..|+.|++.++.|+.++||+|..+
T Consensus 142 i~~~----------~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl~~ 209 (318)
T TIGR03603 142 VDEL----------KDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFITCTLPPETGCFECLER 209 (318)
T ss_pred EeeH----------HHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEEEEeCCCCCcHHHccc
Confidence 9763 3678999999999999999966 9999999999999999999999999988989999999955
No 44
>PRK06153 hypothetical protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=228.92 Aligned_cols=149 Identities=17% Similarity=0.279 Sum_probs=126.8
Q ss_pred HHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCcccc-CCCCCCCCc--hHHHHHHHHHHhhCC
Q 015243 4 ERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF-LFRQSHVGQ--SKAKVARDAVLKFRP 80 (410)
Q Consensus 4 ~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~-lf~~~diG~--~Ka~~a~~~l~~~np 80 (410)
.+.|++|++++|+||||||+||.++..|+++||++|+|+|+|.|+.+||+||. +|+.+|+|+ +|++++++++.++||
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC
Confidence 35799999999999999999999999999999999999999999999999998 678999999 999999999999998
Q ss_pred CCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCC
Q 015243 81 QMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKP 160 (410)
Q Consensus 81 ~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~ 160 (410)
.|+++...+++. +.+.+.++|+||+|+|+.++|..++++|.++++|+|++|.. +.+.-....+|.+|....
T Consensus 248 --~I~~~~~~I~~~--n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~-----l~~~~g~l~G~~Rvt~~~ 318 (393)
T PRK06153 248 --GIVPHPEYIDED--NVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG-----LELSNGSLGGILRVTLST 318 (393)
T ss_pred --eEEEEeecCCHH--HHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec-----ceecCCCcCcEEEEEEec
Confidence 567777777543 34568999999999999999999999999999999999853 111111124577776543
Q ss_pred C
Q 015243 161 A 161 (410)
Q Consensus 161 ~ 161 (410)
+
T Consensus 319 p 319 (393)
T PRK06153 319 P 319 (393)
T ss_pred C
Confidence 3
No 45
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.93 E-value=5.3e-26 Score=172.49 Aligned_cols=67 Identities=52% Similarity=0.681 Sum_probs=56.4
Q ss_pred cccCCcHHHHHHHHHHHHHHHHhcCCCCCChhHHHhhhccccchhhhHHHHHHHHHHHHHHHHHhcC
Q 015243 333 SFDKDDQLAVEFVTAAANIRAASFGISLHSLFEAKGIAGNIVHAVATTNAIIAGLIVIEAIKVLLKD 399 (410)
Q Consensus 333 ~FeKDDd~hidFI~AasNLRA~ny~I~~~~~~~~k~iag~IiPAiatT~aivagl~~~e~~k~~~~~ 399 (410)
+|||||++|++||+|+|||||++||||+.|++++++++|+||||++||||||||++|+|++|+++++
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~ 67 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC 67 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence 5999999999999999999999999999999999999999999999999999999999999999863
No 46
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.92 E-value=3.4e-25 Score=205.94 Aligned_cols=154 Identities=31% Similarity=0.566 Sum_probs=140.0
Q ss_pred HHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeE
Q 015243 5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI 84 (410)
Q Consensus 5 e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i 84 (410)
...+||+...|.|||.||+|+-.+..|.++|+|++.|.|.|.|+..|+||-| |+++..|.+|++++++.|..+||++.+
T Consensus 75 ~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGlsKv~AA~~TL~~iNPDV~i 153 (422)
T KOG2336|consen 75 DDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLSKVDAAVQTLAEINPDVVI 153 (422)
T ss_pred hhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccchHHHHHHHHHHhcCCCeEE
Confidence 3468999999999999999999999999999999999999999999999998 799999999999999999999999999
Q ss_pred EEEccCCCCCcchHhhh-----------ccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc--CccceEEEEeCCCC
Q 015243 85 TAHHANVKDPKFNVEFF-----------KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT--GFLGQVTVHVKGKT 151 (410)
Q Consensus 85 ~~~~~~i~~~~~~~~~~-----------~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~--G~~G~v~~~~~~~t 151 (410)
+.|.-+++.-..-+.|. +..|+|+.|+||+++|..+|..|...+.-|+++|.. ...||++.+.|+.|
T Consensus 154 E~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnAVSGHIQ~i~PGet 233 (422)
T KOG2336|consen 154 EVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENAVSGHIQLIVPGET 233 (422)
T ss_pred EEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCccccccceeEEecCCcc
Confidence 99999985432222332 358999999999999999999999999999999987 57799999999999
Q ss_pred ccccccCC
Q 015243 152 ECYECQPK 159 (410)
Q Consensus 152 ~c~~C~~~ 159 (410)
.|+.|.++
T Consensus 234 ACFACaPP 241 (422)
T KOG2336|consen 234 ACFACAPP 241 (422)
T ss_pred ceecccCc
Confidence 99999976
No 47
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1e-23 Score=198.31 Aligned_cols=147 Identities=20% Similarity=0.464 Sum_probs=139.3
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
-|-+.|++|+++||+|+|.+|+|.|++|||+++||++++++|.-.|...+++-|||++.+++|+.|+++..++++.+||.
T Consensus 21 WG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raeas~erl~~LNPm 100 (331)
T KOG2014|consen 21 WGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEASLERLQDLNPM 100 (331)
T ss_pred ccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHHHHHHHHhcCCc
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK 150 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~ 150 (410)
++|....+.+.+. +++||.+||+||..--+.+.+..+|..|++++++|+.+++.|+.|+.+..+..+
T Consensus 101 V~v~~d~edl~ek--~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~~h 167 (331)
T KOG2014|consen 101 VDVSVDKEDLSEK--DEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQEH 167 (331)
T ss_pred eEEEechhhhhhc--chhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehhhh
Confidence 9999999888654 579999999999988889999999999999999999999999999999987653
No 48
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.2e-24 Score=220.27 Aligned_cols=182 Identities=20% Similarity=0.439 Sum_probs=163.9
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|+|+++||+.++|||.|+||+|.|+||||+++||+++||.|...+..++|+.||+++++|||++++++..++|.++|+.
T Consensus 27 lG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~y 106 (1013)
T KOG2012|consen 27 LGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNNY 106 (1013)
T ss_pred ccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHHhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCCCccccccCCCC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGKTECYECQPKPA 161 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~t~c~~C~~~~~ 161 (410)
|.|..+.+..+ .+|+++|++||.+-.+.+....++++|+++++.+|.+.+.|..|++++..+....|++ ..+..
T Consensus 107 V~V~v~t~~~~-----~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDFG~eF~v~D-~tGee 180 (1013)
T KOG2012|consen 107 VPVVVLTGPLT-----EEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDFGEEFTVLD-PTGEE 180 (1013)
T ss_pred eeeEEecCccc-----HHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccCCCceEEeC-CCCCc
Confidence 99999987764 5899999999998888999999999999999999999999999999999999888877 44556
Q ss_pred CCCCCceeeccCCCcchHHHHHHHHHHHH
Q 015243 162 PKTYPVCTITSTPSKFVHCIVWAKDLLFA 190 (410)
Q Consensus 162 ~~~~p~cti~~~p~~~~h~i~~a~~~~f~ 190 (410)
|.+..+-.|...-...+.|+.-+++ -|+
T Consensus 181 P~t~mI~~Is~d~pGvvT~ld~~rH-~lE 208 (1013)
T KOG2012|consen 181 PLTGMIASISQDNPGVVTCLDGARH-GFE 208 (1013)
T ss_pred chhhHHhhccCCCCceEEEecCccc-cCc
Confidence 6676666666654467777776666 344
No 49
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.89 E-value=2.8e-23 Score=192.81 Aligned_cols=105 Identities=15% Similarity=0.288 Sum_probs=97.2
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+|.++|+||++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+|||+++. ++|++|+++++++++++||+
T Consensus 16 wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~~L~eLNP~ 94 (287)
T PTZ00245 16 WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARALGALQRLNPH 94 (287)
T ss_pred hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999987 68999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCCh
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNL 114 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~ 114 (410)
++|+++..++++. .+|++||.+.-+.
T Consensus 95 V~V~~i~~rld~~-------n~fqvvV~~~~~l 120 (287)
T PTZ00245 95 VSVYDAVTKLDGS-------SGTRVTMAAVITE 120 (287)
T ss_pred cEEEEcccccCCc-------CCceEEEEEcccH
Confidence 9999998888543 4788888886543
No 50
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.5e-22 Score=187.79 Aligned_cols=137 Identities=25% Similarity=0.378 Sum_probs=127.8
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
||+++|+||.++-|+||||||+||.++..|+++|+++|.|+|.|.|+.|.||||......|||.||+.++++.++++.|.
T Consensus 64 fGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw 143 (430)
T KOG2018|consen 64 FGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPW 143 (430)
T ss_pred hhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G 138 (410)
++|++...-++.....+-.+.+.|+|++|.||.+++.-+-++|..+++++|.+...+
T Consensus 144 ~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Gaa 200 (430)
T KOG2018|consen 144 CEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAA 200 (430)
T ss_pred ceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCcc
Confidence 999999888876655555677899999999999999999999999999999875333
No 51
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.85 E-value=1.1e-20 Score=188.20 Aligned_cols=234 Identities=21% Similarity=0.298 Sum_probs=174.3
Q ss_pred CHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCC---CchHHHHHHHHHHhhC
Q 015243 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHV---GQSKAKVARDAVLKFR 79 (410)
Q Consensus 3 g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~di---G~~Ka~~a~~~l~~~n 79 (410)
+.-..+++.+.++++.|+|.+||.++++|...||+|||++|+.+|..||-.||.||..+|. |++||++|+++|++++
T Consensus 331 PdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~If 410 (669)
T KOG2337|consen 331 PDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIF 410 (669)
T ss_pred CccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhC
Confidence 4445689999999999999999999999999999999999999999999999999999997 5999999999999999
Q ss_pred CCCeEEEEccCCC-------CC---------cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceE
Q 015243 80 PQMSITAHHANVK-------DP---------KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQV 143 (410)
Q Consensus 80 p~v~i~~~~~~i~-------~~---------~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v 143 (410)
|.++-+++...+. +. .-.+.+++..|+|+..+|+.++|+.-.-+|...++-+|++. .|+..++
T Consensus 411 P~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINaA-LGFDsyl 489 (669)
T KOG2337|consen 411 PSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINAA-LGFDSYL 489 (669)
T ss_pred ccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeeee-cccceeE
Confidence 9999888776651 11 01134688999999999999999999999999999888875 4665544
Q ss_pred EEE--------------------eCCCCccccccCCCCCCC-------CCceeeccCCCcchHHHHHHHHHHHHHHhCCC
Q 015243 144 TVH--------------------VKGKTECYECQPKPAPKT-------YPVCTITSTPSKFVHCIVWAKDLLFAKLFGDK 196 (410)
Q Consensus 144 ~~~--------------------~~~~t~c~~C~~~~~~~~-------~p~cti~~~p~~~~h~i~~a~~~~f~~~f~~~ 196 (410)
..- .+.+-+||.|..--.|.. -..||++. |....-+-..|.|++-..+.+.-
T Consensus 490 VMRHG~~~~~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVtR-PG~a~IA~alAVELlvslLQhP~ 568 (669)
T KOG2337|consen 490 VMRHGTGRKEASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVTR-PGVANIASALAVELLVSLLQHPL 568 (669)
T ss_pred EEecCCCCcccccccccccccccCcccceeEeEcceecCCCcccccchhheeeccC-CchhHHHHHHHHHHHHHHHhCcc
Confidence 322 223568999986544432 25799875 55554456789996656665531
Q ss_pred ----Cccc--ccccc-CccccchhhHHhhhh--------cCCcccHHHHHHHHHHhh
Q 015243 197 ----NQEN--DLNVR-SSDASSSAHAEDVFV--------RRKDEDIDQYGRRIYDHV 238 (410)
Q Consensus 197 ----~~~~--~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~a~~~f~~~ 238 (410)
+... ..+++ ......+++++.++. ...++.|..+...+.+.|
T Consensus 569 ~~a~~~s~~~~~n~~~tvLG~lPHQIRGfL~nFs~i~~~~~af~qC~ACS~~Vi~ey 625 (669)
T KOG2337|consen 569 GYAQNSSEETEENEPTTVLGILPHQIRGFLHNFSNILPSTQAFDQCTACSEAVINEY 625 (669)
T ss_pred ccccCCCcccccCCCCcccccccHHHHHhhhhhhhhccccccccccchhhHHHHHHH
Confidence 1100 11111 112226788887763 235788988887766554
No 52
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.3e-20 Score=185.03 Aligned_cols=149 Identities=23% Similarity=0.381 Sum_probs=135.5
Q ss_pred CCHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 2 VSERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 2 ~g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
-|+++|..|..++|+++|||++|||++|||++.|+|.|+++|...|+.++++.+|+...+++|++||++..+.++++||+
T Consensus 17 wge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~e~LqeLN~~ 96 (523)
T KOG2016|consen 17 WGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATLEFLQELNPS 96 (523)
T ss_pred HHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHHHHHHHhChh
Confidence 48899999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CeEEEEccCCCC-CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEEeCCC
Q 015243 82 MSITAHHANVKD-PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGK 150 (410)
Q Consensus 82 v~i~~~~~~i~~-~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~~~~~ 150 (410)
++-....+..+. ...+..||.+|++|+.+--+.+....+.+.|+.+++|++.+.+.|+.|.+...+..+
T Consensus 97 V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ikEH 166 (523)
T KOG2016|consen 97 VSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRISIKEH 166 (523)
T ss_pred hhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEEeeec
Confidence 987766655421 123568999999999987777888899999999999999999999999999987764
No 53
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.58 E-value=7.5e-15 Score=151.97 Aligned_cols=137 Identities=24% Similarity=0.365 Sum_probs=113.5
Q ss_pred CHHHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC
Q 015243 3 SERQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (410)
Q Consensus 3 g~e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v 82 (410)
|.+..++-++++|+|+|.||+|+.++.+|+.+|+++|+.+|.|.+ .+|++| ||+. ++.+++ +||++
T Consensus 120 ~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v 185 (637)
T TIGR03693 120 GALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDAL 185 (637)
T ss_pred chhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCC
Confidence 445566679999999999999999999999999999999999999 999999 7776 555554 99999
Q ss_pred eEEEEccCCCCCcchHhhhccCcEEEEccCCh--HHHHHHHHHHHHCC---CcEEEecccCccceEEEEeCCCCcccccc
Q 015243 83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDNL--DARRHVNRLCLAAD---VPLVESGTTGFLGQVTVHVKGKTECYECQ 157 (410)
Q Consensus 83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~--~~r~~i~~~c~~~~---~p~i~~g~~G~~G~v~~~~~~~t~c~~C~ 157 (410)
+++.+.. +....-.+.++++|+|++..|++ +...++|+.|++.+ +|++.+|..++.|-++. |+.++|+.|.
T Consensus 186 ~v~~i~~--~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~liGPlft--PgkTGCWeCa 261 (637)
T TIGR03693 186 LVQEIDF--AEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGLAGPVFQ--QHGDECFEAA 261 (637)
T ss_pred ceEeccC--CcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEcccceeecceEC--CCCCcHHHHH
Confidence 9998876 33333457789999999999954 45688999999999 55566677777776655 9999999994
No 54
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.50 E-value=7.8e-15 Score=101.85 Aligned_cols=45 Identities=62% Similarity=1.249 Sum_probs=39.4
Q ss_pred CCCccccccCCCCCCCCCceeeccCCCcchHHHHHHHHHHHHHHhC
Q 015243 149 GKTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFG 194 (410)
Q Consensus 149 ~~t~c~~C~~~~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~ 194 (410)
+.|+||+|..++.+.++|+|||+++|+.++|||+||++ +|+.+|+
T Consensus 1 ~~Tecy~c~~~~~~~~~P~CTir~~P~~~~HcI~wAk~-~f~~~F~ 45 (45)
T PF10585_consen 1 HVTECYECSPDPPEKSYPVCTIRNFPRTPEHCIEWAKD-LFEELFG 45 (45)
T ss_dssp TTS--TTCSGGGSSSSEEHHHHHTS-SSHHHHHHHHHH-HHHHHHT
T ss_pred CccccccCCCCCCCCCCCcchhhcCCCCchHHHHHHHH-HHHHHhC
Confidence 46899999999999999999999999999999999997 8999996
No 55
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.28 E-value=5.4e-06 Score=72.47 Aligned_cols=117 Identities=15% Similarity=0.253 Sum_probs=93.5
Q ss_pred CCcEEEECCcHHHHHHHHHHH---HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 12 GAKVLMVGAGGIGCELLKTLA---LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa---~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
+..|.++|||.+|--++-+|. +.|..+|.++|...|++.++---. --..+|.+|++.++ ++.+..+.-+|++..
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr--~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~p 94 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRR--LGAKVGEYKVDFIK-RLGRVHFGRRVEAFP 94 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHH--hCCCcchhHHHHHH-HhCcCCCCceeeccc
Confidence 456999999999999999998 578899999999999999984222 24579999999765 455667777999999
Q ss_pred cCCCCCcchHhhhccCcEEEEc---cCChHHHHHHHHHHHHCCCcEEEe
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNG---LDNLDARRHVNRLCLAADVPLVES 134 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a---~Dn~~~r~~i~~~c~~~~~p~i~~ 134 (410)
..+++++. ..+++ |+|+.| .|..+.-..+-++|++.++.-|..
T Consensus 95 E~it~dNl--hll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT 140 (217)
T COG4015 95 ENITKDNL--HLLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTIST 140 (217)
T ss_pred ccccccch--hhhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEeec
Confidence 99987643 45555 777664 477888889999999999977754
No 56
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=98.09 E-value=5.1e-06 Score=84.95 Aligned_cols=36 Identities=36% Similarity=0.470 Sum_probs=32.2
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHHHHhcCCCCCCh
Q 015243 328 EIGNLSFDKDDQLAVEFVTAAANIRAASFGISLHSL 363 (410)
Q Consensus 328 ~~~p~~FeKDDd~hidFI~AasNLRA~ny~I~~~~~ 363 (410)
.+.|++||.+|+.|++||.++|||||..|+|+.-++
T Consensus 244 ~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~FeK 279 (435)
T cd01490 244 CPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPGFEK 279 (435)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 367999999999999999999999999999986333
No 57
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=98.04 E-value=2e-05 Score=72.48 Aligned_cols=96 Identities=24% Similarity=0.295 Sum_probs=74.7
Q ss_pred CHHHHHHHhCCcEEEECCcHHHHH-HHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 3 SERQLEAIKGAKVLMVGAGGIGCE-LLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 3 g~e~q~~L~~~~VlvvG~GgiG~e-v~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+.+.+++|++.+|.|+|.|+.|++ ++..|+.+|++.+.
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~----------------------------------------- 134 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP----------------------------------------- 134 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-----------------------------------------
Confidence 356789999999999999999999 99999999998654
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCccceEEEE-eCCCCcccccc
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVH-VKGKTECYECQ 157 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~-~~~~t~c~~C~ 157 (410)
.+ ...++|++.....+-...+|+...+.++||+-....|..+.+.++ .|+.|+|+.|.
T Consensus 135 ----------~~--------a~l~vVl~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~ 193 (193)
T TIGR03882 135 ----------SE--------ADLTVVLTDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL 193 (193)
T ss_pred ----------CC--------CCEEEEEeCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence 00 112333333222234456899999999999999999998988875 69999999995
No 58
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.99 E-value=3.6e-05 Score=77.60 Aligned_cols=101 Identities=23% Similarity=0.399 Sum_probs=73.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 92 (410)
++|+|+|||++|+.++.+|++.|.++|++.|... .|+ +++...... ++++..-++.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-------------------~~~----~~i~~~~~~-~v~~~~vD~~ 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-------------------EKC----ARIAELIGG-KVEALQVDAA 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-------------------HHH----HHHHhhccc-cceeEEeccc
Confidence 6899999999999999999999999999988211 121 222222111 6666666665
Q ss_pred CCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (410)
Q Consensus 93 ~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G 138 (410)
+..-..+.++++|+||+|..-.-.+ .+-+.|.+.++++++.....
T Consensus 58 d~~al~~li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~ 102 (389)
T COG1748 58 DVDALVALIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYE 102 (389)
T ss_pred ChHHHHHHHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCC
Confidence 4444557889999999998755444 67789999999999987543
No 59
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.85 E-value=0.00016 Score=66.98 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=65.5
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.|.+++|+|||.|.+|...++.|...| .++++++.+. . ..+.+.. +.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~---------------~~l~~l~----~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T---------------ENLVKLV----EEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C---------------HHHHHHH----hCCCEEEEe
Confidence 378999999999999999999999999 6799986431 0 0111111 111233333
Q ss_pred cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEe
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES 134 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~ 134 (410)
..+ ....+.++|+||.|+++.+.-..+.+.| ..++++-.+
T Consensus 61 ~~~-----~~~~l~~adlViaaT~d~elN~~i~~~a-~~~~lvn~~ 100 (202)
T PRK06718 61 KEF-----EPSDIVDAFLVIAATNDPRVNEQVKEDL-PENALFNVI 100 (202)
T ss_pred cCC-----ChhhcCCceEEEEcCCCHHHHHHHHHHH-HhCCcEEEC
Confidence 222 3345788999999999999999999999 456654443
No 60
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.85 E-value=6e-05 Score=73.46 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=60.0
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+..++|+|+|+||.|..++..|+..|+++|+|+|.+ ..|++.+++.+.+..+.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 566799999999999999999999999999999854 268888888887777765543321
Q ss_pred CCCCCcchHhhhccCcEEEEccC
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~D 112 (410)
.+ .+.+.++|+||+|+.
T Consensus 185 ~~------~~~~~~aDiVInaTp 201 (284)
T PRK12549 185 DL------AAALAAADGLVHATP 201 (284)
T ss_pred ch------HhhhCCCCEEEECCc
Confidence 11 234578999999963
No 61
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.81 E-value=9e-05 Score=64.05 Aligned_cols=79 Identities=27% Similarity=0.423 Sum_probs=57.2
Q ss_pred HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
..+.+++|+|+|+||.|..+++.|...|+++|+|++ |. ..|++.+++.+ +...+...
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n----------Rt---------~~ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVN----------RT---------PERAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE----------SS---------HHHHHHHHHHH----TGCSEEEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE----------CC---------HHHHHHHHHHc----Ccccccee
Confidence 368999999999999999999999999999999976 32 24677666666 33333333
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCCh
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDNL 114 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~ 114 (410)
.-. + ..+.+.++|+||+|+...
T Consensus 65 ~~~--~---~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 65 PLE--D---LEEALQEADIVINATPSG 86 (135)
T ss_dssp EGG--G---HCHHHHTESEEEE-SSTT
T ss_pred eHH--H---HHHHHhhCCeEEEecCCC
Confidence 211 1 125678999999998654
No 62
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.62 E-value=0.00085 Score=62.25 Aligned_cols=97 Identities=19% Similarity=0.232 Sum_probs=72.1
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
|++++|+|||.|.+|..-++.|...|. ++++++++.- ..+.+ +.+. -+++.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l~~-l~~~---~~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SELTL-LAEQ---GGITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHHHH-HHHc---CCEEEEeC
Confidence 678999999999999999999999995 6999986421 00111 1111 14555554
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~ 137 (410)
... ...+.++++||.|+|+.+....+...|+..++|+-.++--
T Consensus 61 ~~~-----~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~ 103 (205)
T TIGR01470 61 CFD-----ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDP 103 (205)
T ss_pred CCC-----HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCc
Confidence 442 3557899999999999888899999999999988655533
No 63
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.59 E-value=0.00027 Score=58.16 Aligned_cols=89 Identities=17% Similarity=0.266 Sum_probs=64.5
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.|++.+|+|||.|.+|..-++.|..+| .+++++.++. +. +. ..++ ...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~---------------------~~-------~~i~--~~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF---------------------SE-------GLIQ--LIR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH---------------------HH-------TSCE--EEE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh---------------------hh-------hHHH--HHh
Confidence 478999999999999999999999999 6799998765 10 00 1122 222
Q ss_pred cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
..+ . +.+.++++|+.|+++.+....+.+.|++.++|+-.+.
T Consensus 52 ~~~-----~-~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 52 REF-----E-EDLDGADLVFAATDDPELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp SS------G-GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT
T ss_pred hhH-----H-HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECC
Confidence 222 2 4478899999999999999999999999999876654
No 64
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.42 E-value=0.0016 Score=57.82 Aligned_cols=85 Identities=13% Similarity=0.205 Sum_probs=61.5
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.|++++|+|||.|.+|...++.|...|. ++++++++..+ .+.++ + .++...
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l-~--~i~~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKEL-P--YITWKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhc-c--CcEEEe
Confidence 4789999999999999999999999996 58898755321 01111 1 122222
Q ss_pred cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHC
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~ 127 (410)
..+ ....+.++|+||.|+|+.+....+...|+..
T Consensus 61 ~~~-----~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 61 KTF-----SNDDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred ccc-----ChhcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 222 3345688999999999999988888888774
No 65
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.38 E-value=0.00063 Score=69.00 Aligned_cols=96 Identities=26% Similarity=0.440 Sum_probs=66.6
Q ss_pred EEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243 15 VLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (410)
Q Consensus 15 VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 93 (410)
|+|+|+|.+|..+++.|++.+-- ++++.|.+. .|++.+++.+ ...++....-++.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence 78999999999999999998854 899988332 2333333322 33467777667765
Q ss_pred CcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEe
Q 015243 94 PKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES 134 (410)
Q Consensus 94 ~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~ 134 (410)
......+++++|+||+|+... ....+-+.|.+.++++++.
T Consensus 58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 58 PESLAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred HHHHHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence 444567899999999998765 6667899999999999994
No 66
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.34 E-value=0.0026 Score=59.66 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=70.3
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+++.+|+|||.|.+|..=++.|...| .+|+++-++.-+ . +.+ +.+ ++ +++....
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~------------------e---l~~-l~~-~~--~i~~~~r 76 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK------------------E---FLD-LKK-YG--NLKLIKG 76 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH------------------H---HHH-HHh-CC--CEEEEeC
Confidence 56889999999999999999999999 459998655210 0 011 111 22 3544444
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~ 136 (410)
.+ ....+.++++||.|+|+.+.-..+.+.|...++++..+.-
T Consensus 77 ~~-----~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 77 NY-----DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred CC-----ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 44 3455789999999999999999999999999998776643
No 67
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.98 E-value=0.0034 Score=61.32 Aligned_cols=84 Identities=19% Similarity=0.318 Sum_probs=55.2
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+.+++++|+|+||+|..++..|+..|+.+|+|++.+.- ...|++.+++.+.+..+.+.+...
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~-- 185 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVY-- 185 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEe--
Confidence 45778999999999999999999999999999873210 113566666666555454443322
Q ss_pred CCCCCcchHhhhccCcEEEEcc
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGL 111 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~ 111 (410)
.+.+.......+..+|+||+|+
T Consensus 186 d~~~~~~~~~~~~~~DilINaT 207 (289)
T PRK12548 186 DLNDTEKLKAEIASSDILVNAT 207 (289)
T ss_pred chhhhhHHHhhhccCCEEEEeC
Confidence 2221111123456778988886
No 68
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.92 E-value=0.0035 Score=61.12 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=54.6
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+.+++|+|+|+||.|..++..|+..|+.+|+|+|.+ ..|++.+++.+....+...+...
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~-------------------~~ka~~La~~~~~~~~~~~~~~~-- 183 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGV-- 183 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC-------------------HHHHHHHHHHHhhccCcceEEec--
Confidence 456789999999999999999999999999998633 23778787776544333222221
Q ss_pred CCCCCcchHhhhccCcEEEEccC
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~D 112 (410)
... . .......+|+||+|+.
T Consensus 184 ~~~--~-~~~~~~~~divINaTp 203 (283)
T PRK14027 184 DAR--G-IEDVIAAADGVVNATP 203 (283)
T ss_pred CHh--H-HHHHHhhcCEEEEcCC
Confidence 110 0 0123467899999874
No 69
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.88 E-value=0.0017 Score=66.01 Aligned_cols=76 Identities=28% Similarity=0.355 Sum_probs=58.4
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.|.+++|+|||+|-+|.-+++.|...|+.+|+++ ||++ .|++-+++.+. .++..+.
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT~---------erA~~La~~~~-----~~~~~l~ 230 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRTL---------ERAEELAKKLG-----AEAVALE 230 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCCH---------HHHHHHHHHhC-----CeeecHH
Confidence 4778899999999999999999999999999994 6764 37777777664 2222221
Q ss_pred cCCCCCcchHhhhccCcEEEEccCChH
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNLD 115 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~ 115 (410)
...+++.++|+||.|+..+.
T Consensus 231 -------el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 231 -------ELLEALAEADVVISSTSAPH 250 (414)
T ss_pred -------HHHHhhhhCCEEEEecCCCc
Confidence 12477899999999987644
No 70
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.80 E-value=0.0034 Score=61.10 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=52.5
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+++++|+|+|+||.|..++..|+..|+++|+|++.+ ..|++.+++.+.... .+....
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~---~~~~~~- 179 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG---VITRLE- 179 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC---cceecc-
Confidence 467899999999999999999999999999998632 246777766654321 111111
Q ss_pred CCCCCcchHhhhccCcEEEEccC
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~D 112 (410)
... . ......++|+||+|+-
T Consensus 180 ~~~--~-~~~~~~~~DiVInaTp 199 (282)
T TIGR01809 180 GDS--G-GLAIEKAAEVLVSTVP 199 (282)
T ss_pred chh--h-hhhcccCCCEEEECCC
Confidence 000 0 1133467999999974
No 71
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.012 Score=55.34 Aligned_cols=99 Identities=18% Similarity=0.278 Sum_probs=67.1
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 92 (410)
++++|+|+|.+|..+++.|+..|-. ++++|.|.- .+.+.+.. .....++..+.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~----------------------~~~~~~~~---~~~~~~v~gd~t 54 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEE----------------------RVEEFLAD---ELDTHVVIGDAT 54 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHH----------------------HHHHHhhh---hcceEEEEecCC
Confidence 4799999999999999999999966 777774431 11222221 123444444444
Q ss_pred CCcchH-hhhccCcEEEEccCChHHHHHHHHHHHH-CCCcEEEeccc
Q 015243 93 DPKFNV-EFFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVESGTT 137 (410)
Q Consensus 93 ~~~~~~-~~~~~~DvVi~a~Dn~~~r~~i~~~c~~-~~~p~i~~g~~ 137 (410)
+..... .-+.++|+++.++++......+-.++.+ +++|-+.+...
T Consensus 55 ~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~~ 101 (225)
T COG0569 55 DEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARAR 101 (225)
T ss_pred CHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEec
Confidence 332222 2367899999999987877777777766 89998887653
No 72
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.71 E-value=0.015 Score=57.70 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=92.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 92 (410)
++|.|||+|.+|+.++..++..|.. ++++|.+.-....+ +.+.....+.+.+..+. ......++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~--~~~~~~~i~ 72 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAAL------------RANVANAWPALERQGLA--PGASPARLR 72 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCC--hhhHHhhce
Confidence 5799999999999999999999976 88888554211110 11111111222111110 001111221
Q ss_pred CCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccce-EEEEeCCCCccccccCCCCCCCCCce
Q 015243 93 DPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLGQ-VTVHVKGKTECYECQPKPAPKTYPVC 168 (410)
Q Consensus 93 ~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G~-v~~~~~~~t~c~~C~~~~~~~~~p~c 168 (410)
-.....+-++++|+|+.|+ ++.+.+..+-+.....-. .+|.+.|.+.... +.-......-|...++-.++...|..
T Consensus 73 ~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLV 152 (321)
T PRK07066 73 FVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLV 152 (321)
T ss_pred ecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccCceE
Confidence 1111235678999999986 456666555443333222 3777777665321 11111222334444454556667888
Q ss_pred eeccCCCcchHHHHHHHHHHHHHHhC
Q 015243 169 TITSTPSKFVHCIVWAKDLLFAKLFG 194 (410)
Q Consensus 169 ti~~~p~~~~h~i~~a~~~~f~~~f~ 194 (410)
.+...+.+....+.++.+ ++.. .+
T Consensus 153 EVv~g~~T~~e~~~~~~~-f~~~-lG 176 (321)
T PRK07066 153 EVLGGERTAPEAVDAAMG-IYRA-LG 176 (321)
T ss_pred EEeCCCCCCHHHHHHHHH-HHHH-cC
Confidence 888888888888999988 4554 44
No 73
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.68 E-value=0.0066 Score=59.30 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=53.9
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+++++++|+|+||.+..++-.|+..|+++|+|++.+. -...|++.+++.+....+ ..+....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~- 183 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTD- 183 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEec-
Confidence 4677999999999999999999999999999987210 124577777777654322 1222211
Q ss_pred CCCCCcchHhhhccCcEEEEcc
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGL 111 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~ 111 (410)
+.+.....+-..++|+||+|+
T Consensus 184 -~~~~~~l~~~~~~aDivINaT 204 (288)
T PRK12749 184 -LADQQAFAEALASADILTNGT 204 (288)
T ss_pred -hhhhhhhhhhcccCCEEEECC
Confidence 110000012346789999986
No 74
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=96.65 E-value=0.0036 Score=64.22 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=54.2
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.+.+++|+|+|+|+.|..++++|+..|+.+|+++. |. ..|++.+++.+. ...+..+.
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n----------Rt---------~~ra~~La~~~~----~~~~~~~~ 234 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN----------RT---------IEKAQKITSAFR----NASAHYLS 234 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC----------CC---------HHHHHHHHHHhc----CCeEecHH
Confidence 46789999999999999999999999999999964 32 135555555432 12221111
Q ss_pred cCCCCCcchHhhhccCcEEEEccCChH
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNLD 115 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~ 115 (410)
...+.+.++|+||+|+..+.
T Consensus 235 -------~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 235 -------ELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred -------HHHHHhccCCEEEECcCCCC
Confidence 11366889999999987643
No 75
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.56 E-value=0.011 Score=57.74 Aligned_cols=165 Identities=15% Similarity=0.195 Sum_probs=86.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCc---cccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLN---RQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~---Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
++|.|||+|.+|+.++.+|++.|.. ++++|.+.=...... ++.+=+...-|....+...+.+.++. +
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~----~----- 75 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVD-VLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR----F----- 75 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCE-EEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE----e-----
Confidence 4899999999999999999999975 999985543222100 00000000112211111112221111 1
Q ss_pred CCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHC----CCcEEEecccCcc-ceEEEEeCCCCccccccCCCCCC
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAA----DVPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPK 163 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~----~~p~i~~g~~G~~-G~v~~~~~~~t~c~~C~~~~~~~ 163 (410)
. ..+ +-++++|+||.|+ ++.+.+..+-....+. +..+. +.+.+.. ..+........-+....+-.++.
T Consensus 76 --~-~~~--~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~-snTS~~~~~~la~~~~~~~r~~g~hf~~P~~ 149 (286)
T PRK07819 76 --T-TDL--GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLA-SNTSSIPIMKLAAATKRPGRVLGLHFFNPVP 149 (286)
T ss_pred --e-CCH--HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEE-ECCCCCCHHHHHhhcCCCccEEEEecCCCcc
Confidence 1 111 2368999999986 5566666554443333 33333 3333221 11111111112233333333444
Q ss_pred CCCceeeccCCCcchHHHHHHHHHHHHHHhC
Q 015243 164 TYPVCTITSTPSKFVHCIVWAKDLLFAKLFG 194 (410)
Q Consensus 164 ~~p~cti~~~p~~~~h~i~~a~~~~f~~~f~ 194 (410)
..|..++..-+.+....+++++. ++....+
T Consensus 150 ~~~lvElv~~~~T~~~~~~~~~~-~~~~~lg 179 (286)
T PRK07819 150 VLPLVELVPTLVTSEATVARAEE-FASDVLG 179 (286)
T ss_pred cCceEEEeCCCCCCHHHHHHHHH-HHHHhCC
Confidence 55777888888888899999998 4454444
No 76
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.48 E-value=0.011 Score=57.42 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=52.0
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+.+++|+|+|+||+|..+++.|...|+.++++++.+ ..|++.+++.+....+ +.+ ..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~~ 177 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---DL 177 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---cc
Confidence 567899999999999999999999999999998632 2355556655543221 121 00
Q ss_pred CCCCCcchHhhhccCcEEEEccC
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~D 112 (410)
. ..+.+.++|+||+|+-
T Consensus 178 ~------~~~~~~~~DivInaTp 194 (278)
T PRK00258 178 E------LQEELADFDLIINATS 194 (278)
T ss_pred c------chhccccCCEEEECCc
Confidence 1 1244578999999974
No 77
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.47 E-value=0.011 Score=55.08 Aligned_cols=98 Identities=15% Similarity=0.271 Sum_probs=69.5
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.|.+++|+|||.|.+|..=++.|..+|.. ++++-++. + +. +...+.+ + ++....
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~-~-----------------~e---l~~~~~~-~---~i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF-E-----------------PE---LKALIEE-G---KIKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc-c-----------------HH---HHHHHHh-c---Ccchhh
Confidence 46789999999999999999999999955 77765433 1 11 1111111 1 132222
Q ss_pred cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~ 137 (410)
..+..+.+..+++||.|+|+.+....+.+.|..+++|+-.+.--
T Consensus 63 -----~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p 106 (210)
T COG1648 63 -----REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDP 106 (210)
T ss_pred -----cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCc
Confidence 22344556679999999999999999999999999987766543
No 78
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.45 E-value=0.012 Score=57.19 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=53.7
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
..++++|+|+||.+-.++..|+..|+.+|+|++ |. ..|++.+++.+.+..+.+......
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~N----------Rt---------~~ra~~La~~~~~~~~~~~~~~~~-- 183 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVN----------RT---------RERAEELADLFGELGAAVEAAALA-- 183 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe----------CC---------HHHHHHHHHHhhhccccccccccc--
Confidence 358899999999999999999999999999975 22 357888888887776522221111
Q ss_pred CCCCcchHhhhccCcEEEEccC
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLD 112 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~D 112 (410)
+. +-..++|+||+|+.
T Consensus 184 --~~----~~~~~~dliINaTp 199 (283)
T COG0169 184 --DL----EGLEEADLLINATP 199 (283)
T ss_pred --cc----ccccccCEEEECCC
Confidence 10 11116899999974
No 79
>PRK04148 hypothetical protein; Provisional
Probab=96.44 E-value=0.043 Score=47.34 Aligned_cols=96 Identities=25% Similarity=0.409 Sum_probs=72.0
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
++.+|++||+| -|..+++.|+..|. .++.+|.+. ..++.+ ++. .+.+...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~~a----~~~----~~~~v~dD 66 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVEKA----KKL----GLNAFVDD 66 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHH----HHh----CCeEEECc
Confidence 34679999999 99999999999996 688888332 122222 222 24556666
Q ss_pred CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~ 137 (410)
+.+. +.++++++|+|....-..+....+-+++.+.+.+++-.-..
T Consensus 67 lf~p--~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 67 LFNP--NLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred CCCC--CHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 6554 45789999999999988999999999999999998865433
No 80
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.43 E-value=0.016 Score=59.91 Aligned_cols=95 Identities=22% Similarity=0.229 Sum_probs=58.6
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+++++|+|+|+|++|.++++.|+..|. +++++|.+.-+ ..+...+.+.+. .+.....
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~------------------~~~~~~~~l~~~----~~~~~~~ 59 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEED------------------QLKEALEELGEL----GIELVLG 59 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchH------------------HHHHHHHHHHhc----CCEEEeC
Confidence 678999999999999999999999996 59998865310 111112233322 2233333
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~ 133 (410)
... .+...++|+||.+....... -+-..|++.++|++.
T Consensus 60 ~~~-----~~~~~~~d~vv~~~g~~~~~-~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 60 EYP-----EEFLEGVDLVVVSPGVPLDS-PPVVQAHKKGIEVIG 97 (450)
T ss_pred Ccc-----hhHhhcCCEEEECCCCCCCC-HHHHHHHHCCCcEEe
Confidence 332 13457899999987543222 234455666666553
No 81
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.42 E-value=0.012 Score=57.18 Aligned_cols=32 Identities=34% Similarity=0.636 Sum_probs=28.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+|.|+|+|.+|+.++..|+..|. +++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999996 59999854
No 82
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.35 E-value=0.033 Score=54.71 Aligned_cols=32 Identities=25% Similarity=0.549 Sum_probs=28.4
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
++|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 579999999999999999999996 58888854
No 83
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.31 E-value=0.019 Score=56.73 Aligned_cols=83 Identities=25% Similarity=0.347 Sum_probs=55.6
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+.+.+|+|+|+|.+|..+++.|...|..+++++|.+. .|++.+++.+ . . .+....
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~---g-~-~~~~~~- 230 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKEL---G-G-NAVPLD- 230 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHc---C-C-eEEeHH-
Confidence 5789999999999999999999999999999987432 3444343332 1 1 221110
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHH
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~ 123 (410)
...+.+.++|+||.|+.+......+...
T Consensus 231 ------~~~~~l~~aDvVi~at~~~~~~~~~~~~ 258 (311)
T cd05213 231 ------ELLELLNEADVVISATGAPHYAKIVERA 258 (311)
T ss_pred ------HHHHHHhcCCEEEECCCCCchHHHHHHH
Confidence 1234567899999999876663333333
No 84
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.25 E-value=0.011 Score=53.11 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=30.8
Q ss_pred HHhCCcEEEECCcHH-HHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGAGGI-GCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~Ggi-G~ev~knLa~~Gv~~i~liD~ 44 (410)
.|.+++|+|+|+|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 478999999999985 8889999999998 5888873
No 85
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.21 E-value=0.044 Score=57.10 Aligned_cols=96 Identities=10% Similarity=0.122 Sum_probs=70.4
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.|++++|+|||.|.++..=++.|...|. +++++-++. . +.++++-..-+|+...
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-------------HHHHHHHhCCCEEEEe
Confidence 4789999999999999999999999996 588875431 1 0111111122455554
Q ss_pred cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
..+ ..+.++++++||.|+|+.+.-..+.+.|+..++++-.+.
T Consensus 63 ~~~-----~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d 104 (457)
T PRK10637 63 GPF-----DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVD 104 (457)
T ss_pred CCC-----ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECC
Confidence 444 345678999999999999999999999999998765544
No 86
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.10 E-value=0.025 Score=55.68 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=50.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC----CCeEEEE
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP----QMSITAH 87 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np----~v~i~~~ 87 (410)
++|.|+|+|++|+.++..|+..|+. +|.|+|.+ ..|++..+.-+.+..+ .+.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~- 60 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA- 60 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence 3799999999999999999999985 89999842 2344444555544321 222221
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCC
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
. +.+-++++|+||.++..
T Consensus 61 -~-------~~~~l~~aDIVIitag~ 78 (306)
T cd05291 61 -G-------DYSDCKDADIVVITAGA 78 (306)
T ss_pred -C-------CHHHhCCCCEEEEccCC
Confidence 1 11336899999998764
No 87
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.07 E-value=0.052 Score=52.64 Aligned_cols=157 Identities=17% Similarity=0.240 Sum_probs=79.5
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---------Ce
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---------MS 83 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~---------v~ 83 (410)
++|.|||+|-+|+.++..|+..|. +++++|.+.-. +.+ ++...+...+.+.+...- .+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~---~~~---------~~~~i~~~l~~~~~~g~~~~~~~~~~~~~ 70 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAA---VDR---------GLATITKSLDRLVKKGKMTEADKEAALAR 70 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHH---HHH---------HHHHHHHHHHHHHHcCCCCHHHHHHHHhC
Confidence 579999999999999999999997 68898854322 111 111111111111111100 01
Q ss_pred EEEEccCCCCCcchHhhhccCcEEEEcc-CChHHHHH-HHHHHHHCC-CcEEEecccCccce-EEEEeCCCCccccccCC
Q 015243 84 ITAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRH-VNRLCLAAD-VPLVESGTTGFLGQ-VTVHVKGKTECYECQPK 159 (410)
Q Consensus 84 i~~~~~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~-i~~~c~~~~-~p~i~~g~~G~~G~-v~~~~~~~t~c~~C~~~ 159 (410)
+... . .+ +-++++|+||.|+ ++...... +.++..... -.++.+.+.|..-. +.-..+....+..+++-
T Consensus 71 l~~~-----~-~~--~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~ 142 (282)
T PRK05808 71 ITGT-----T-DL--DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFF 142 (282)
T ss_pred eEEe-----C-CH--HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeecc
Confidence 1111 1 11 2268899999997 45555433 333332211 12445555543321 11111222234444443
Q ss_pred CCCCCCCceeeccCCCcchHHHHHHHHHHHHH
Q 015243 160 PAPKTYPVCTITSTPSKFVHCIVWAKDLLFAK 191 (410)
Q Consensus 160 ~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~ 191 (410)
.+....|..++...+......+..+++ +++.
T Consensus 143 ~P~~~~~~vev~~g~~t~~e~~~~~~~-l~~~ 173 (282)
T PRK05808 143 NPVPVMKLVEIIRGLATSDATHEAVEA-LAKK 173 (282)
T ss_pred CCcccCccEEEeCCCCCCHHHHHHHHH-HHHH
Confidence 333334555666666666666777776 4553
No 88
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.07 E-value=0.032 Score=58.46 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=70.5
Q ss_pred HHHHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCe
Q 015243 5 RQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMS 83 (410)
Q Consensus 5 e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~ 83 (410)
+.+.-+.+++|+|-|+ |++|+|+++.++..+.++|.++|.|. .|-..+...+++..|..+
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-------------------~~~~~i~~el~~~~~~~~ 303 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-------------------YKLYLIDMELREKFPELK 303 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-------------------HHHHHHHHHHHhhCCCcc
Confidence 4567889999999985 67999999999999999999987543 455567778888888889
Q ss_pred EEEEccCCCCCcchHhhhcc--CcEEEEcc
Q 015243 84 ITAHHANVKDPKFNVEFFKQ--FNVVLNGL 111 (410)
Q Consensus 84 i~~~~~~i~~~~~~~~~~~~--~DvVi~a~ 111 (410)
+..+-.++.+..--...+++ .|+|+-|.
T Consensus 304 ~~~~igdVrD~~~~~~~~~~~kvd~VfHAA 333 (588)
T COG1086 304 LRFYIGDVRDRDRVERAMEGHKVDIVFHAA 333 (588)
T ss_pred eEEEecccccHHHHHHHHhcCCCceEEEhh
Confidence 99998888665444556677 89998863
No 89
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.04 E-value=0.0087 Score=54.30 Aligned_cols=163 Identities=15% Similarity=0.266 Sum_probs=81.9
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCcccc---CCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQF---LFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~---lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
+|.|||+|.+|..++-.+++.|.. ++++|.+.-.....-+.. +=+..+-|+...+.+...+.++. +..+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~-V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-------~~~d 72 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYE-VTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-------FTTD 72 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSE-EEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-------EESS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCc-EEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-------cccC
Confidence 689999999999999999999965 999997554322211110 00000112222222333333222 1111
Q ss_pred CCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHC--CCcEEEecccCcc-ceEEEEeCCCCccccccCCCCCCCCC
Q 015243 91 VKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAA--DVPLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKTYP 166 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~--~~p~i~~g~~G~~-G~v~~~~~~~t~c~~C~~~~~~~~~p 166 (410)
+ .+.. ++|+||.|+ ++.+.+..+-+..... .-.++.+.+.++. ..+....+...-+...++-.++...|
T Consensus 73 l------~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~~ 145 (180)
T PF02737_consen 73 L------EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLMP 145 (180)
T ss_dssp G------GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT--
T ss_pred H------HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccCc
Confidence 1 2333 899999986 5666666555544432 1234444444322 00100011112233444444556678
Q ss_pred ceeeccCCCcchHHHHHHHHHHHHHH
Q 015243 167 VCTITSTPSKFVHCIVWAKDLLFAKL 192 (410)
Q Consensus 167 ~cti~~~p~~~~h~i~~a~~~~f~~~ 192 (410)
...+...|.+..-.+.++.+ +++.+
T Consensus 146 lVEvv~~~~T~~~~~~~~~~-~~~~~ 170 (180)
T PF02737_consen 146 LVEVVPGPKTSPETVDRVRA-LLRSL 170 (180)
T ss_dssp EEEEEE-TTS-HHHHHHHHH-HHHHT
T ss_pred eEEEeCCCCCCHHHHHHHHH-HHHHC
Confidence 88998889999999999998 45543
No 90
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=95.93 E-value=0.022 Score=53.22 Aligned_cols=114 Identities=23% Similarity=0.347 Sum_probs=75.9
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
+.+++++++| +||||-+++|.|..-|+..+.+.| +.+. -.+...|+++||.+++..+.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~---------------~~En------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDD---------------SEEN------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehh---------------hhhC------HHHHHHHhccCCCceEEEEE
Confidence 4678888885 999999999999999999888765 1111 23556789999999999999
Q ss_pred cCCCCCcchHh-------hhccCcEEEEcc---CC--hHHHHHHHHHHH----HCCCcEEEecccCccceEE
Q 015243 89 ANVKDPKFNVE-------FFKQFNVVLNGL---DN--LDARRHVNRLCL----AADVPLVESGTTGFLGQVT 144 (410)
Q Consensus 89 ~~i~~~~~~~~-------~~~~~DvVi~a~---Dn--~~~r~~i~~~c~----~~~~p~i~~g~~G~~G~v~ 144 (410)
.++++...... -+...|++|+.. |+ .+.-..+|-... ....|+.+-.-.|..|-+.
T Consensus 62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIv 133 (261)
T KOG4169|consen 62 CDVTNRGDLEAAFDKILATFGTIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIV 133 (261)
T ss_pred eccccHHHHHHHHHHHHHHhCceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEE
Confidence 99865321111 256679999942 22 222222333222 2345777766666666543
No 91
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.84 E-value=0.11 Score=49.85 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=52.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
.+|.|||+|.+|..++..|...|. ..+.++|.+. .+++.+++. + .+.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~~~~~---~--g~~~------ 52 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAALAEE---Y--GVRA------ 52 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHHHHHh---c--CCee------
Confidence 579999999999999999999984 3466655221 122222221 1 1221
Q ss_pred CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~ 133 (410)
.. ...+...++|+||.|+-....+..+..+....+..++.
T Consensus 53 -~~--~~~~~~~~advVil~v~~~~~~~v~~~l~~~~~~~vvs 92 (267)
T PRK11880 53 -AT--DNQEAAQEADVVVLAVKPQVMEEVLSELKGQLDKLVVS 92 (267)
T ss_pred -cC--ChHHHHhcCCEEEEEcCHHHHHHHHHHHHhhcCCEEEE
Confidence 11 12344678999999987665666555544333444443
No 92
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.82 E-value=0.012 Score=55.48 Aligned_cols=37 Identities=27% Similarity=0.532 Sum_probs=34.7
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCC
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMD 45 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D 45 (410)
.+++++|+|+|+|+.|..+++.|+..|++ +|+++|.+
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 47889999999999999999999999999 99999966
No 93
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.80 E-value=0.07 Score=44.92 Aligned_cols=95 Identities=20% Similarity=0.293 Sum_probs=56.0
Q ss_pred cEEEEC-CcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 14 KVLMVG-AGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 14 ~VlvvG-~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
||.||| .|-+|.++++.|...-- .-+.++.. ....|+.=..... .......+....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~---------------~~~~g~~~~~~~~----~~~~~~~~~~~~--- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSS---------------SRSAGKPLSEVFP----HPKGFEDLSVED--- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEES---------------TTTTTSBHHHTTG----GGTTTEEEBEEE---
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeee---------------ccccCCeeehhcc----ccccccceeEee---
Confidence 799999 99999999999998322 22333321 1125553222211 111111222211
Q ss_pred CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
.+.+.+.+.|+|+.|+++..++.+...+ .+.++++|+.+
T Consensus 59 ----~~~~~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s 97 (121)
T PF01118_consen 59 ----ADPEELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLS 97 (121)
T ss_dssp ----TSGHHHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESS
T ss_pred ----cchhHhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCC
Confidence 1234459999999999986666665555 78899999864
No 94
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.73 E-value=0.049 Score=53.90 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=50.8
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC-eEEEEcc
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM-SITAHHA 89 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v-~i~~~~~ 89 (410)
..||.|+|+|.+|+.++-.|+..|+. +|.|+|- ...|++..+.-+....|.. ++.....
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~~ 66 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYAG 66 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEeC
Confidence 46999999999999999999999985 7999983 2334555555555554422 2222211
Q ss_pred CCCCCcchHhhhccCcEEEEccC
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLD 112 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~D 112 (410)
. .+-++++|+||.+..
T Consensus 67 ~-------~~~~~~adivIitag 82 (315)
T PRK00066 67 D-------YSDCKDADLVVITAG 82 (315)
T ss_pred C-------HHHhCCCCEEEEecC
Confidence 1 233799999998654
No 95
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.72 E-value=0.047 Score=61.84 Aligned_cols=99 Identities=21% Similarity=0.285 Sum_probs=59.7
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCC-C------------cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGF-Q------------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK 77 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv-~------------~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~ 77 (410)
+.++|+|+|+|.+|..+++.|++.+- . .+++.|.+ ..+++.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~-------------------~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY-------------------LKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC-------------------HHHHHHHHHh---
Confidence 46799999999999999999997642 2 24444422 2333333332
Q ss_pred hCCCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 78 FRPQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 78 ~np~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
.|+++ +..-++.+...-..+++++|+||+|+.. ..-..+.+.|.++++.+++..
T Consensus 626 -~~~~~--~v~lDv~D~e~L~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 626 -IENAE--AVQLDVSDSESLLKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred -cCCCc--eEEeecCCHHHHHHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence 24332 2222233222223445789999999865 233456677777777777653
No 96
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.71 E-value=0.038 Score=50.46 Aligned_cols=82 Identities=21% Similarity=0.260 Sum_probs=53.7
Q ss_pred HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
.+++++++|+|+ |++|..+++.|+..| .++++++.+ ..|++.+++.+.+.. ...+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 457789999996 999999999999988 478887532 235555666554322 2333322
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCC
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
...+.....+.+.++|+||+++..
T Consensus 84 --~~~~~~~~~~~~~~~diVi~at~~ 107 (194)
T cd01078 84 --ETSDDAARAAAIKGADVVFAAGAA 107 (194)
T ss_pred --eCCCHHHHHHHHhcCCEEEECCCC
Confidence 121111123567889999998754
No 97
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.65 E-value=0.049 Score=47.37 Aligned_cols=75 Identities=24% Similarity=0.371 Sum_probs=51.7
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC--eEEEEc
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM--SITAHH 88 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v--~i~~~~ 88 (410)
.||.|||+ |.+|+.++-.|+..|+. +|.|+|.+ ..|++..+.-+....+.. .+....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~ 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc
Confidence 48999999 99999999999999985 59999822 225555555555543322 333332
Q ss_pred cCCCCCcchHhhhccCcEEEEccCC
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
.. .+-++++|+||.+...
T Consensus 62 ~~-------~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 62 GD-------YEALKDADIVVITAGV 79 (141)
T ss_dssp SS-------GGGGTTESEEEETTST
T ss_pred cc-------ccccccccEEEEeccc
Confidence 21 2457899999997644
No 98
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.62 E-value=0.17 Score=49.31 Aligned_cols=33 Identities=36% Similarity=0.623 Sum_probs=28.9
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
++|.|||+|.+|+.++..|+..|. +++++|.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999995 588888543
No 99
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=95.60 E-value=0.023 Score=55.34 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=46.2
Q ss_pred EEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC--C--eEEEEcc
Q 015243 15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ--M--SITAHHA 89 (410)
Q Consensus 15 VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~--v--~i~~~~~ 89 (410)
|||-| +|.+|+|+++.|+..|..+|.++|.|--...++ .+.+++..|+ + .+.....
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l-------------------~~~l~~~~~~~~v~~~~~~vig 61 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL-------------------ERELRSRFPDPKVRFEIVPVIG 61 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH-------------------HHHCHHHC--TTCEEEEE--CT
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH-------------------HHHHhhcccccCcccccCceee
Confidence 67776 889999999999999999999999765444443 3334333333 3 2334455
Q ss_pred CCCCCcchHhhhc--cCcEEEEcc
Q 015243 90 NVKDPKFNVEFFK--QFNVVLNGL 111 (410)
Q Consensus 90 ~i~~~~~~~~~~~--~~DvVi~a~ 111 (410)
++.+...-...++ +.|+|+-|.
T Consensus 62 Dvrd~~~l~~~~~~~~pdiVfHaA 85 (293)
T PF02719_consen 62 DVRDKERLNRIFEEYKPDIVFHAA 85 (293)
T ss_dssp SCCHHHHHHHHTT--T-SEEEE--
T ss_pred cccCHHHHHHHHhhcCCCEEEECh
Confidence 6644333344556 678888763
No 100
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.57 E-value=0.14 Score=44.49 Aligned_cols=35 Identities=40% Similarity=0.587 Sum_probs=30.9
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+++|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 45789999999999999999999998677888873
No 101
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.52 E-value=0.13 Score=50.13 Aligned_cols=33 Identities=27% Similarity=0.589 Sum_probs=29.6
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
++|.|+|+|.+|+.++..|+..|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999997 599998654
No 102
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.52 E-value=0.026 Score=43.78 Aligned_cols=54 Identities=26% Similarity=0.377 Sum_probs=38.7
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR 79 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n 79 (410)
||+|||.|.+|+|++..|+..|. +++|++...- +. ...+..=++.+.+.+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~----------~~-~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR----------LL-PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS----------SS-TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch----------hh-hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999995 6888874331 11 2334444556667777663
No 103
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.50 E-value=0.063 Score=52.95 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=49.6
Q ss_pred cEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-----CCeEEEE
Q 015243 14 KVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-----QMSITAH 87 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np-----~v~i~~~ 87 (410)
||.|||+|.+|+.++-.|+..|+ ++|.|+|- -+.|++..+.-|....+ .+++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~-- 59 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIR-- 59 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEE--
Confidence 68999999999999999999998 57999982 23344444445555333 23333
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCC
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
... .+-++++|+||.+...
T Consensus 60 ~~~-------y~~~~~aDivvitaG~ 78 (307)
T cd05290 60 AGD-------YDDCADADIIVITAGP 78 (307)
T ss_pred ECC-------HHHhCCCCEEEECCCC
Confidence 221 3557999999987543
No 104
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.50 E-value=0.063 Score=53.31 Aligned_cols=35 Identities=29% Similarity=0.577 Sum_probs=31.5
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++..||.|||+|.+|+.++..++..|...+.|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45689999999999999999999999866999984
No 105
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.49 E-value=0.094 Score=44.50 Aligned_cols=98 Identities=28% Similarity=0.310 Sum_probs=60.4
Q ss_pred cEEEECC-cHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 14 KVLMVGA-GGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 14 ~VlvvG~-GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
||.|+|+ |-+|.++++.+.. .|+.=.-.+|... +. +-..|+|. .+..-...+.+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~------~~g~d~g~--------~~~~~~~~~~v~------ 58 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA------KVGKDVGE--------LAGIGPLGVPVT------ 58 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST------TTTSBCHH--------HCTSST-SSBEB------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc------cccchhhh--------hhCcCCcccccc------
Confidence 7999999 9999999999998 6665555566333 00 11234431 111111122221
Q ss_pred CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF 139 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~ 139 (410)
....+.+..+|+||+.+ ++++-...-++|.++++|++-+- .|+
T Consensus 59 ---~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGT-TG~ 101 (124)
T PF01113_consen 59 ---DDLEELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGT-TGF 101 (124)
T ss_dssp ---S-HHHHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE--SSS
T ss_pred ---hhHHHhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEEC-CCC
Confidence 11346677799999998 77888888889999999998754 344
No 106
>PLN00203 glutamyl-tRNA reductase
Probab=95.42 E-value=0.04 Score=58.15 Aligned_cols=78 Identities=21% Similarity=0.354 Sum_probs=52.7
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
|.+++|+|||+|.+|..+++.|...|+.++++++.+ ..|++.+++.+ +++.+....
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~- 319 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKP- 319 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeec-
Confidence 557999999999999999999999999999997622 12444444332 233322211
Q ss_pred CCCCCcchHhhhccCcEEEEccCChH
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLD 115 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~ 115 (410)
+. ...+.+.++|+||.|+....
T Consensus 320 -~~---dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 320 -LD---EMLACAAEADVVFTSTSSET 341 (519)
T ss_pred -Hh---hHHHHHhcCCEEEEccCCCC
Confidence 11 12356789999999986543
No 107
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=95.41 E-value=0.15 Score=49.51 Aligned_cols=106 Identities=16% Similarity=0.239 Sum_probs=70.0
Q ss_pred HHHhCCcEEEECCcHHHHHHHHHHHHh----CC------CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 015243 8 EAIKGAKVLMVGAGGIGCELLKTLALS----GF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK 77 (410)
Q Consensus 8 ~~L~~~~VlvvG~GgiG~ev~knLa~~----Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~ 77 (410)
.+|.+.||+++|+|+-|.-+++.|... |+ ++|.++|.+-+=..+ | .|.-..|.. ..+.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~----~a~~ 88 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKP----FARK 88 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHH----HHhh
Confidence 468899999999999999999999988 99 699999976542211 1 123233333 2222
Q ss_pred hCCCCeEEEEccCCCCCcchHhhhc--cCcEEEEccC--ChHHHHHHHHHHHHCCCcEEEecc
Q 015243 78 FRPQMSITAHHANVKDPKFNVEFFK--QFNVVLNGLD--NLDARRHVNRLCLAADVPLVESGT 136 (410)
Q Consensus 78 ~np~v~i~~~~~~i~~~~~~~~~~~--~~DvVi~a~D--n~~~r~~i~~~c~~~~~p~i~~g~ 136 (410)
.++ ... ....+.++ +.|++|.+.. ..-.+..+..++.....|+|..-+
T Consensus 89 ~~~--------~~~---~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 89 DEE--------KEG---KSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred cCc--------ccC---CCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 332 001 11245566 7788888653 344677788888888888887643
No 108
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.29 E-value=0.25 Score=52.05 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=80.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 92 (410)
++|.|||+|.+|+.++.+|+..|. .+++.|.+.-....+.+ ....+.+.+..+.. .... ...++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~~~~~~~~~------------~~~~~~~~~~~l~~-~~~~-~~g~i~ 69 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHPEAERIIGE------------VLANAERAYAMLTD-APLP-PEGRLT 69 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH------------HHHHHHHHHhhhcc-chhh-hhhceE
Confidence 479999999999999999999998 58898864322211100 00000111111100 0000 000110
Q ss_pred CCcchHhhhccCcEEEEccCC-hHHHHH-HHHHHHH-CCCcEEEecccCccce-EEEEeCCCCccccccCCCCCCCCCce
Q 015243 93 DPKFNVEFFKQFNVVLNGLDN-LDARRH-VNRLCLA-ADVPLVESGTTGFLGQ-VTVHVKGKTECYECQPKPAPKTYPVC 168 (410)
Q Consensus 93 ~~~~~~~~~~~~DvVi~a~Dn-~~~r~~-i~~~c~~-~~~p~i~~g~~G~~G~-v~~~~~~~t~c~~C~~~~~~~~~p~c 168 (410)
-.....+.++++|+|+.++-. .+.+.. +.++... ..-.+|.+.+.|..-. +.-..+....|+...+-.++...|..
T Consensus 70 ~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lv 149 (495)
T PRK07531 70 FCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLV 149 (495)
T ss_pred eeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCcccCceE
Confidence 001123457899999998754 333433 2332211 1223677777774311 11112222334443333233334555
Q ss_pred eeccCCCcchHHHHHHHHHHHHHH
Q 015243 169 TITSTPSKFVHCIVWAKDLLFAKL 192 (410)
Q Consensus 169 ti~~~p~~~~h~i~~a~~~~f~~~ 192 (410)
.+..-+......+..+++ +|+.+
T Consensus 150 evv~g~~t~~e~~~~~~~-~~~~l 172 (495)
T PRK07531 150 ELVGGGKTSPETIRRAKE-ILREI 172 (495)
T ss_pred EEcCCCCCCHHHHHHHHH-HHHHc
Confidence 555555555566788887 46553
No 109
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.26 E-value=0.11 Score=49.56 Aligned_cols=107 Identities=14% Similarity=0.234 Sum_probs=68.0
Q ss_pred HHHhCCcEEEECCcHHHHHHHHHHHHh----CC------CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 015243 8 EAIKGAKVLMVGAGGIGCELLKTLALS----GF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK 77 (410)
Q Consensus 8 ~~L~~~~VlvvG~GgiG~ev~knLa~~----Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~ 77 (410)
++|.+.||+++|+|+.|.-+++.|+.+ |+ ++|.++|.+-+=..+ ..|+- ..-+...+.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--------r~~l~----~~~~~~a~~ 88 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--------REDLN----PHKKPFARK 88 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--------TSSHS----HHHHHHHBS
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--------CccCC----hhhhhhhcc
Confidence 368999999999999999999999999 99 899999976432111 11221 222344444
Q ss_pred hCCCCeEEEEccCCCCCcchHhhhccC--cEEEEccC--ChHHHHHHHHHHHHCCCcEEEecc
Q 015243 78 FRPQMSITAHHANVKDPKFNVEFFKQF--NVVLNGLD--NLDARRHVNRLCLAADVPLVESGT 136 (410)
Q Consensus 78 ~np~v~i~~~~~~i~~~~~~~~~~~~~--DvVi~a~D--n~~~r~~i~~~c~~~~~p~i~~g~ 136 (410)
.+|.-.. ....+-++++ |++|.+.. ..-....+..++.....|+|..-+
T Consensus 89 ~~~~~~~----------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS 141 (255)
T PF03949_consen 89 TNPEKDW----------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS 141 (255)
T ss_dssp SSTTT------------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S
T ss_pred Ccccccc----------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC
Confidence 4443211 1124556666 88888653 333577888888888899987743
No 110
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.22 E-value=0.074 Score=46.97 Aligned_cols=97 Identities=15% Similarity=0.279 Sum_probs=56.2
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH--hhCCCCeEEEEccCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL--KFRPQMSITAHHANV 91 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~--~~np~v~i~~~~~~i 91 (410)
||.|+|+|..|+.++..|+..| .+++|.+.|.= ..+.+.+.=. ...|+.++.. .-.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-------------------~~~~i~~~~~n~~~~~~~~l~~-~i~~ 59 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-------------------QIEEINETRQNPKYLPGIKLPE-NIKA 59 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-------------------HHHHHHHHTSETTTSTTSBEET-TEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-------------------HHHHHHHhCCCCCCCCCcccCc-cccc
Confidence 6899999999999999999999 56777665431 1111111100 1123332221 1111
Q ss_pred CCCcchHhhhccCcEEEEccCChHHHHHHHHHHH--HCCCcEEE
Q 015243 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVE 133 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~--~~~~p~i~ 133 (410)
+. ...+.+++.|+|+.++.+...+..+.++.. +.+.+++.
T Consensus 60 t~--dl~~a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 60 TT--DLEEALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp ES--SHHHHHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred cc--CHHHHhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 21 124567899999999988877777777654 34555654
No 111
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.16 E-value=0.019 Score=51.08 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=60.0
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC--
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN-- 90 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~-- 90 (410)
++|.+||+|.+|+.++++|+..|.. +++.|.+.-....+.. .|-..++..++.+++- ++-+......
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~--------~g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAE--------AGAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHH--------TTEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHH--------hhhhhhhhhhhHhhcc--cceEeecccchh
Confidence 5899999999999999999999976 7887743211111110 0111111122222222 2222222211
Q ss_pred C----CCCcchHhhhccCcEEEEc-cCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243 91 V----KDPKFNVEFFKQFNVVLNG-LDNLDARRHVNRLCLAADVPLVESGTTGF 139 (410)
Q Consensus 91 i----~~~~~~~~~~~~~DvVi~a-~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~ 139 (410)
+ .... ....+..-.++|++ +-+++....+.+.+...++.++++...|.
T Consensus 71 v~~v~~~~~-i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGEN-ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTT-HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred hhhhhhhhH-HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence 0 0000 11223344667764 45566777888888888888888887764
No 112
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.14 E-value=0.015 Score=56.71 Aligned_cols=33 Identities=33% Similarity=0.660 Sum_probs=29.1
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
++|.|||+|.+|..++.+|+..|. +++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999996 488988654
No 113
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.04 E-value=0.12 Score=50.72 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=53.1
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
.++|.|+|+|.+|+.+++.|+..|. .+++.|.+.- .
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~~-----------------------------------------~-- 39 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRSG-----------------------------------------L-- 39 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCCC-----------------------------------------C--
Confidence 4689999999999999999999996 5888875420 0
Q ss_pred CCCcchHhhhccCcEEEEccCChHHHHHHHHHHH---HCCCcEEEe
Q 015243 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL---AADVPLVES 134 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~---~~~~p~i~~ 134 (410)
...+..+++|+|+.++.+...+..++.+.. ..+..++++
T Consensus 40 ----~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~ 81 (308)
T PRK14619 40 ----SLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA 81 (308)
T ss_pred ----CHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 012445789999999877666666655532 224556554
No 114
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.01 E-value=0.21 Score=48.62 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=29.2
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
-++|.|||+|.+|..++..|+..|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999997 58888854
No 115
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=94.89 E-value=0.074 Score=42.44 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=54.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCC--CcEEEE-eCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGF--QDIHII-DMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv--~~i~li-D~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
||.++|+|.+|..+++.|...|+ .++.++ +. ...|++.+ .+..+ +.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r-------------------~~~~~~~~----~~~~~-~~~~~---- 52 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR-------------------SPEKAAEL----AKEYG-VQATA---- 52 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES-------------------SHHHHHHH----HHHCT-TEEES----
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC-------------------cHHHHHHH----HHhhc-ccccc----
Confidence 68999999999999999999995 345533 31 11222222 22222 22211
Q ss_pred CCCCcchHhhhccCcEEEEccCChHHHHHHHHH-HHHCCCcEEEe
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL-CLAADVPLVES 134 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~-c~~~~~p~i~~ 134 (410)
....+.++..|+||.|+........+.+. ....++.+|+.
T Consensus 53 ----~~~~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~ 93 (96)
T PF03807_consen 53 ----DDNEEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI 93 (96)
T ss_dssp ----EEHHHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred ----CChHHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence 01356778999999999876666666666 34456666654
No 116
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.89 E-value=0.2 Score=51.64 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=60.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 92 (410)
++|+|+|+|.+|..+++.|...|.. ++++|.+. .+.+.++ + . ..+.....+.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~-v~vid~~~-------------------~~~~~~~----~-~--~~~~~~~gd~~ 53 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENND-VTVIDTDE-------------------ERLRRLQ----D-R--LDVRTVVGNGS 53 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCc-EEEEECCH-------------------HHHHHHH----h-h--cCEEEEEeCCC
Confidence 4799999999999999999998874 77887432 1122221 1 1 12334444443
Q ss_pred CCcchHh-hhccCcEEEEccCChHHHHHHHHHHHHC-CCcEEEe
Q 015243 93 DPKFNVE-FFKQFNVVLNGLDNLDARRHVNRLCLAA-DVPLVES 134 (410)
Q Consensus 93 ~~~~~~~-~~~~~DvVi~a~Dn~~~r~~i~~~c~~~-~~p~i~~ 134 (410)
+...-.+ -++++|.|+.++++...-..+-..++.. +.+.+-+
T Consensus 54 ~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 54 SPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred CHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 3221122 2678999999998877777777777775 5544433
No 117
>PRK07063 short chain dehydrogenase; Provisional
Probab=94.85 E-value=0.14 Score=48.45 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=44.7
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
+|.+++++|.| .||||.++++.|+..|.. +.++|.+ ..+.+.+++.+.+.++..++..+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 63 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALADLD-------------------AALAERAAAAIARDVAGARVLAV 63 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence 46788999998 589999999999999974 7776621 23444555555554445566666
Q ss_pred ccCCCC
Q 015243 88 HANVKD 93 (410)
Q Consensus 88 ~~~i~~ 93 (410)
..++++
T Consensus 64 ~~Dl~~ 69 (260)
T PRK07063 64 PADVTD 69 (260)
T ss_pred EccCCC
Confidence 666643
No 118
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.79 E-value=0.13 Score=53.03 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=32.2
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
+.+++|+|+|+|.+|..+++.|..+|+ +++++|.|.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 578899999999999999999999998 699988553
No 119
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.79 E-value=0.071 Score=51.96 Aligned_cols=34 Identities=18% Similarity=0.333 Sum_probs=31.1
Q ss_pred HHhCCcEEEECCcH-HHHHHHHHHHHhCCCcEEEEe
Q 015243 9 AIKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 9 ~L~~~~VlvvG~Gg-iG~ev~knLa~~Gv~~i~liD 43 (410)
.+++++|+|+|+|+ +|..++..|...|. .+++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~ 190 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH 190 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence 36789999999999 99999999999998 899986
No 120
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.77 E-value=0.14 Score=50.67 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=50.2
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC---eEEEE
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM---SITAH 87 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v---~i~~~ 87 (410)
..||.|||+|.+|+.++-.|+..|.. +|.|+|.. ..|++..+.-+....|.. +|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 46999999999999999999999985 69999832 234444455555544322 33321
Q ss_pred ccCCCCCcchHhhhccCcEEEEccC
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLD 112 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~D 112 (410)
. +.+-++++|+||.+..
T Consensus 64 -~-------dy~~~~~adivvitaG 80 (312)
T cd05293 64 -K-------DYSVTANSKVVIVTAG 80 (312)
T ss_pred -C-------CHHHhCCCCEEEECCC
Confidence 1 1234799999998654
No 121
>PLN02602 lactate dehydrogenase
Probab=94.77 E-value=0.11 Score=52.07 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=50.0
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC---CCeEEEEc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP---QMSITAHH 88 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np---~v~i~~~~ 88 (410)
.||.|||+|.+|+.++-.|+..|+ ++|.|+|- ...|++..+.-+....| .++|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999998 57999983 22344444444444332 2333321
Q ss_pred cCCCCCcchHhhhccCcEEEEccCC
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
. +.+.++++|+||.+...
T Consensus 98 ~-------dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 98 T-------DYAVTAGSDLCIVTAGA 115 (350)
T ss_pred C-------CHHHhCCCCEEEECCCC
Confidence 1 12448999999997543
No 122
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.66 E-value=0.15 Score=50.21 Aligned_cols=64 Identities=19% Similarity=0.379 Sum_probs=43.0
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
.|.+++++|.| .||||.++++.|++.|. ++.+++.+. .|.+.+.+.+.+.+|+.++..+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~ 70 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR-------------------AKGEAAVAAIRTAVPDAKLSLR 70 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEEE
Confidence 46778888888 68999999999999996 577765321 2444444555555555555555
Q ss_pred ccCCC
Q 015243 88 HANVK 92 (410)
Q Consensus 88 ~~~i~ 92 (410)
..++.
T Consensus 71 ~~Dl~ 75 (313)
T PRK05854 71 ALDLS 75 (313)
T ss_pred EecCC
Confidence 55553
No 123
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.66 E-value=0.13 Score=50.94 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=54.3
Q ss_pred HHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEE
Q 015243 6 QLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSIT 85 (410)
Q Consensus 6 ~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~ 85 (410)
..+.|++++|.|||.|.+|..++++|..+|+. +++.|.. + ++...++ . ...++.
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~-ViV~~r~------------------~--~s~~~A~---~--~G~~v~ 63 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGVE-VVVGVRP------------------G--KSFEVAK---A--DGFEVM 63 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcCE-EEEEECc------------------c--hhhHHHH---H--cCCEEC
Confidence 35789999999999999999999999999984 6665411 0 1111111 1 122211
Q ss_pred EEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHH
Q 015243 86 AHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNR 122 (410)
Q Consensus 86 ~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~ 122 (410)
. ..+.++.+|+|+.++.+.+.+..++.
T Consensus 64 ----s------l~Eaak~ADVV~llLPd~~t~~V~~~ 90 (335)
T PRK13403 64 ----S------VSEAVRTAQVVQMLLPDEQQAHVYKA 90 (335)
T ss_pred ----C------HHHHHhcCCEEEEeCCChHHHHHHHH
Confidence 1 34778999999998877666665554
No 124
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=94.65 E-value=0.2 Score=47.84 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=67.3
Q ss_pred HHHhCCcEEEECCcHHHHHHHHHHHHhCCC----------cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 015243 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ----------DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK 77 (410)
Q Consensus 8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~----------~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~ 77 (410)
++|.+.||+++|+|+-|.-+++.|...|++ +|.++|..-+=..+- .+.-..|... +++.+.
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--------~~l~~~~~~~-~~~~~~ 91 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--------KETCPNEYHL-ARFANP 91 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--------CccCHHHHHH-HHHcCc
Confidence 468899999999999999999999999987 899999765322111 1122222221 122111
Q ss_pred hCCCCeEEEEccCCCCCcchHhhhc--cCcEEEEccC--ChHHHHHHHHHHHHCCCcEEEecc
Q 015243 78 FRPQMSITAHHANVKDPKFNVEFFK--QFNVVLNGLD--NLDARRHVNRLCLAADVPLVESGT 136 (410)
Q Consensus 78 ~np~v~i~~~~~~i~~~~~~~~~~~--~~DvVi~a~D--n~~~r~~i~~~c~~~~~p~i~~g~ 136 (410)
..+ . ....+-++ +.|++|.... +.-.+..+..++.....|+|.+-+
T Consensus 92 ~~~----------~---~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS 141 (254)
T cd00762 92 ERE----------S---GDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS 141 (254)
T ss_pred ccc----------c---CCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence 110 0 11234556 6778777532 334567778888888888887643
No 125
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.61 E-value=0.06 Score=42.51 Aligned_cols=36 Identities=36% Similarity=0.573 Sum_probs=33.2
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+..++++|+|+|+.|..++..|...|..++.+.|.|
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rd 56 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRD 56 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 678999999999999999999999988899999873
No 126
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.59 E-value=0.18 Score=52.59 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=31.0
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+..++|+|+|+|++|.+++..|...|.. ++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~-V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGAR-VTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 4577999999999999999999999975 9998854
No 127
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.56 E-value=0.42 Score=47.21 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=49.4
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhC-CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSG-FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~G-v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
+++++|+|.| +|++|..+++.|+..| ..+++++|.+.- +...+.+.+ +.-+++.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~-------------------~~~~~~~~~----~~~~~~~v 58 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL-------------------KQWEMQQKF----PAPCLRFF 58 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChh-------------------HHHHHHHHh----CCCcEEEE
Confidence 4568899998 5899999999999987 457888774321 111111111 11245556
Q ss_pred ccCCCCCcchHhhhccCcEEEEcc
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGL 111 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~ 111 (410)
..++.+...-.+.++++|+||.+.
T Consensus 59 ~~Dl~d~~~l~~~~~~iD~Vih~A 82 (324)
T TIGR03589 59 IGDVRDKERLTRALRGVDYVVHAA 82 (324)
T ss_pred EccCCCHHHHHHHHhcCCEEEECc
Confidence 666655433345667789888853
No 128
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.54 E-value=0.17 Score=49.27 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=29.8
Q ss_pred HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
..+.+++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 356788899998 58999999999999997 5777654
No 129
>PRK09242 tropinone reductase; Provisional
Probab=94.51 E-value=0.17 Score=47.65 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=54.4
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
++.+++++|.| .|+||.++++.|+..|. ++.+++.+ ..+.+.+.+.+...+|+.++..+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~ 65 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL 65 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence 36788999998 48999999999999997 47777632 12344455666666666777777
Q ss_pred ccCCCCCcchHh-------hhccCcEEEEcc
Q 015243 88 HANVKDPKFNVE-------FFKQFNVVLNGL 111 (410)
Q Consensus 88 ~~~i~~~~~~~~-------~~~~~DvVi~a~ 111 (410)
..++.+...... .+.+.|+||.+.
T Consensus 66 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a 96 (257)
T PRK09242 66 AADVSDDEDRRAILDWVEDHWDGLHILVNNA 96 (257)
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 666643321111 134567777654
No 130
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.42 E-value=0.42 Score=50.95 Aligned_cols=83 Identities=14% Similarity=0.248 Sum_probs=50.1
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-------CC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-------PQ 81 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n-------p~ 81 (410)
-.++.|+|.| .|+||..+++.|+..|.. +++++.+. .|.+.+.+.+.++. +.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~-Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~ 137 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFR-VRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPV 137 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHhhhhcccccccccc
Confidence 3456788888 599999999999999964 65554321 12333333332211 11
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccC
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLD 112 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~D 112 (410)
.+++....++.+.......+.++|+||++..
T Consensus 138 ~~v~iV~gDLtD~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 138 EKLEIVECDLEKPDQIGPALGNASVVICCIG 168 (576)
T ss_pred CceEEEEecCCCHHHHHHHhcCCCEEEEccc
Confidence 2455666666543333345788999998753
No 131
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.40 E-value=0.19 Score=51.78 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=74.6
Q ss_pred CcEEEECCcHHHH-HHHHHHHH----hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 13 AKVLMVGAGGIGC-ELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 13 ~~VlvvG~GgiG~-ev~knLa~----~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
.||.|||+|+.-+ ++++.|+. .++++|.|+|-|. ...|..- ...+++.+++..+.++|+..
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~v------------~~~~~~~~~~~~~~~~v~~t 66 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEIV------------GALAKRMVKKAGLPIKVHLT 66 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHHH------------HHHHHHHHHhhCCCeEEEEe
Confidence 4799999999765 67777776 5678999999764 3333211 23455666677778888776
Q ss_pred ccCCCCCcchHhhhccCcEEEEcc--CChHHHHHHHHHHHHCCCcEEEecccCccceE
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLGQV 143 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~--Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v 143 (410)
.+. .+-++++|+||++. ...+.|..-.+...++|+- -..|.|..|..
T Consensus 67 ~d~-------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG~~ 115 (419)
T cd05296 67 TDR-------REALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGGFA 115 (419)
T ss_pred CCH-------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcchHH
Confidence 433 35678999999964 4556777777788888774 35667777643
No 132
>PLN02427 UDP-apiose/xylose synthase
Probab=94.37 E-value=0.23 Score=50.16 Aligned_cols=114 Identities=19% Similarity=0.262 Sum_probs=64.6
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
+++.++|+|.| +|-||+.+++.|+..|--++..+|...- .+ ++ +.. .+. ....+ .++.+
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~---~~-~~-l~~---~~~----------~~~~~--~~~~~ 70 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYND---KI-KH-LLE---PDT----------VPWSG--RIQFH 70 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCch---hh-hh-hhc---ccc----------ccCCC--CeEEE
Confidence 56678999998 5999999999999885335777774211 00 00 000 000 00111 35555
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCC-----------------hHHHHHHHHHHHHCCCcEEEecccCccce
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDN-----------------LDARRHVNRLCLAADVPLVESGTTGFLGQ 142 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn-----------------~~~r~~i~~~c~~~~~p~i~~g~~G~~G~ 142 (410)
..++.+...-...++++|+||.+..- ...-..+-+.|++.++.+|..++.+.+|.
T Consensus 71 ~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~ 142 (386)
T PLN02427 71 RINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGK 142 (386)
T ss_pred EcCCCChHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCC
Confidence 55665433333456678888874320 00112234456777788998887766654
No 133
>PLN02240 UDP-glucose 4-epimerase
Probab=94.35 E-value=0.4 Score=47.44 Aligned_cols=33 Identities=33% Similarity=0.691 Sum_probs=28.2
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD 43 (410)
|++++|+|.|+ |.+|..+++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999985 9999999999999985 577776
No 134
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=94.34 E-value=0.47 Score=47.09 Aligned_cols=103 Identities=21% Similarity=0.249 Sum_probs=58.9
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
++|+|.|+ |-+|+.+++.|...|=-+++.+|...- ++ .+..+.-.++.+..++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~---~~-----------------------~~~~~~~~~~~~~~Dl 55 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD---RL-----------------------GDLVNHPRMHFFEGDI 55 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH---HH-----------------------HHhccCCCeEEEeCCC
Confidence 47999996 999999999998764235777763221 00 0111111344445555
Q ss_pred C-CCcchHhhhccCcEEEEccC-----------------ChHHHHHHHHHHHHCCCcEEEecccCccc
Q 015243 92 K-DPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADVPLVESGTTGFLG 141 (410)
Q Consensus 92 ~-~~~~~~~~~~~~DvVi~a~D-----------------n~~~r~~i~~~c~~~~~p~i~~g~~G~~G 141 (410)
. +...-...++++|+||.+.. |...-..+-+.|++.+..+|..++.+.+|
T Consensus 56 ~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg 123 (347)
T PRK11908 56 TINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG 123 (347)
T ss_pred CCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeec
Confidence 3 21122234567788875311 11222345567777788899887765544
No 135
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.26 E-value=0.2 Score=49.27 Aligned_cols=72 Identities=17% Similarity=0.261 Sum_probs=49.9
Q ss_pred EEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC---CeEEEEccC
Q 015243 15 VLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ---MSITAHHAN 90 (410)
Q Consensus 15 VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~---v~i~~~~~~ 90 (410)
|.|||+|.+|+.++-.|+..|+ .+|+|+|.+ +.|++..+.-|....+. .++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~---- 57 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR---- 57 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE----
Confidence 5799999999999999999997 569999832 24555555666665543 22221
Q ss_pred CCCCcchHhhhccCcEEEEccCC
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
.. +.+-++++|+||.+...
T Consensus 58 -~~---~~~~l~~aDiVIitag~ 76 (300)
T cd00300 58 -GG---DYADAADADIVVITAGA 76 (300)
T ss_pred -CC---CHHHhCCCCEEEEcCCC
Confidence 11 12457899999998654
No 136
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.26 E-value=0.22 Score=49.40 Aligned_cols=77 Identities=10% Similarity=0.169 Sum_probs=54.0
Q ss_pred hCCcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 11 KGAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
..++++|+|+|+.|-..+..+. ..|+.++.++|.+ ..|++.+++.+++.. .+++..+.
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~~- 184 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVVN- 184 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEeC-
Confidence 4678999999999999988875 5689999998632 346666777665432 23433321
Q ss_pred CCCCCcchHhhhccCcEEEEccCCh
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNL 114 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~ 114 (410)
+ ..+.+.++|+|++|+.+.
T Consensus 185 ~------~~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 185 S------ADEAIEEADIIVTVTNAK 203 (325)
T ss_pred C------HHHHHhcCCEEEEccCCC
Confidence 1 235568999999999764
No 137
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.3 Score=45.58 Aligned_cols=62 Identities=21% Similarity=0.426 Sum_probs=43.9
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
+++++|.| .||+|.++++.|+..|. ++.+++.+. .+.+.+.+.+.+.+|..++..+..+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence 56788887 89999999999999995 677776431 2334445555566677777777666
Q ss_pred CCC
Q 015243 91 VKD 93 (410)
Q Consensus 91 i~~ 93 (410)
+++
T Consensus 62 ~~~ 64 (248)
T PRK08251 62 VND 64 (248)
T ss_pred CCC
Confidence 654
No 138
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.19 E-value=0.26 Score=48.65 Aligned_cols=87 Identities=24% Similarity=0.330 Sum_probs=53.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC--
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN-- 90 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~-- 90 (410)
+||+|+|+|++||.++-.|++.| ..++++- | ++. .+++++- .+.+......
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~---------------R------~~~---~~~l~~~--GL~i~~~~~~~~ 53 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV---------------R------SRR---LEALKKK--GLRIEDEGGNFT 53 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe---------------c------HHH---HHHHHhC--CeEEecCCCccc
Confidence 48999999999999999999999 7666642 1 111 2223222 3444443331
Q ss_pred C-CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH
Q 015243 91 V-KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA 126 (410)
Q Consensus 91 i-~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~ 126 (410)
. .......+....+|+||.++-+......+..+...
T Consensus 54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~~~ 90 (307)
T COG1893 54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLAPL 90 (307)
T ss_pred cccccccChhhcCCCCEEEEEeccccHHHHHHHhhhc
Confidence 1 11112234566899999998776666665555443
No 139
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.18 E-value=0.17 Score=50.09 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=54.1
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
+...++|+|+|+|+.|..+++.+.+ .|+.++++.+. ...|++.+++.+.+.. ..+...
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~R-------------------s~~~a~~~a~~~~~~g--~~~~~~ 180 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGR-------------------DPAKAEALAAELRAQG--FDAEVV 180 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcC-------------------CHHHHHHHHHHHHhcC--CceEEe
Confidence 3456899999999999999997775 67888998752 2457777777776542 223221
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCC
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
. ...+.+.++|+|++|+.+
T Consensus 181 ----~---~~~~av~~aDIVi~aT~s 199 (314)
T PRK06141 181 ----T---DLEAAVRQADIISCATLS 199 (314)
T ss_pred ----C---CHHHHHhcCCEEEEeeCC
Confidence 1 123567899999999874
No 140
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.09 E-value=0.52 Score=45.19 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=58.3
Q ss_pred CcEEEECC-cHHHHHHHHHHHHh-CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 13 AKVLMVGA-GGIGCELLKTLALS-GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
.||.|+|+ |.+|..+++.+... ++.-..++|.+.- ...+ + ....+..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~---~---------------------~~~~i~~---- 50 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVG---Q---------------------GALGVAI---- 50 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---cccc---c---------------------CCCCccc----
Confidence 48999999 99999999988764 4554555664421 1100 0 0011110
Q ss_pred CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCcc
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL 140 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~ 140 (410)
. .. ..+.+..+|+|++++ .+..-..+...|.++++|++-+ +.|+.
T Consensus 51 -~-~d-l~~ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig-ttG~s 95 (257)
T PRK00048 51 -T-DD-LEAVLADADVLIDFT-TPEATLENLEFALEHGKPLVIG-TTGFT 95 (257)
T ss_pred -c-CC-HHHhccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE-CCCCC
Confidence 0 11 123456799999987 4556677888999999999954 66654
No 141
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.08 E-value=0.51 Score=41.93 Aligned_cols=94 Identities=26% Similarity=0.359 Sum_probs=59.5
Q ss_pred EEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243 15 VLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (410)
Q Consensus 15 VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 93 (410)
|+|+|+ |.+|..+++.|...| .+++.+= |. ..|.+. .+ +++....++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R~---------~~~~~~--------~~--~~~~~~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------RS---------PSKAED--------SP--GVEIIQGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------SS---------GGGHHH--------CT--TEEEEESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------cC---------chhccc--------cc--ccccceeeehh
Confidence 789997 999999999999999 4566531 11 112222 34 45556666654
Q ss_pred CcchHhhhccCcEEEEccCC----hHHHHHHHHHHHHCCCcEE-EecccC
Q 015243 94 PKFNVEFFKQFNVVLNGLDN----LDARRHVNRLCLAADVPLV-ESGTTG 138 (410)
Q Consensus 94 ~~~~~~~~~~~DvVi~a~Dn----~~~r~~i~~~c~~~~~p~i-~~g~~G 138 (410)
...-...++++|.||.+... ...-..+-+.|.+.+++-+ ..++.|
T Consensus 51 ~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 51 PDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred hhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeeccc
Confidence 43334567899999998742 3334456667777777533 334333
No 142
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.05 E-value=0.25 Score=45.94 Aligned_cols=36 Identities=31% Similarity=0.558 Sum_probs=30.0
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+++++|+|.| .|++|..+++.|+..|. ++++++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~ 39 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC 39 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678999998 79999999999999997 57777644
No 143
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.03 E-value=0.61 Score=45.84 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=29.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
++|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999997 599998664
No 144
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=94.01 E-value=0.43 Score=45.78 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=49.2
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
++.+|.++|+|.+|+.+++.|...|. .++.+.|.+.-. .+ +...
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~~ 48 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVYL 48 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEEe
Confidence 45789999999999999999999884 236665532200 00 0111
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c 124 (410)
. .+.+..+++|+||.|+.....+..+.++.
T Consensus 49 ----~---~~~~~~~~~D~Vilavkp~~~~~vl~~i~ 78 (260)
T PTZ00431 49 ----Q---SNEELAKTCDIIVLAVKPDLAGKVLLEIK 78 (260)
T ss_pred ----C---ChHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence 1 12344678899999987766776666654
No 145
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.00 E-value=0.34 Score=45.67 Aligned_cols=82 Identities=12% Similarity=0.248 Sum_probs=49.2
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
...||.|||+|.+|..+++.|...|. ..+.+++.. ...|++.+++ +. .+.+ .
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~---~~--~~~~--~ 57 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQA---RY--NVST--T 57 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHHH---Hc--CcEE--e
Confidence 35789999999999999999998873 223333210 0122222222 22 1221 1
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c 124 (410)
.+ ..+.++++|+|+.|+.....+..+.++.
T Consensus 58 -~~------~~~~~~~~DiViiavp~~~~~~v~~~l~ 87 (245)
T PRK07634 58 -TD------WKQHVTSVDTIVLAMPPSAHEELLAELS 87 (245)
T ss_pred -CC------hHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence 11 2345688999999998766666555543
No 146
>PRK07831 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.28 Score=46.38 Aligned_cols=34 Identities=32% Similarity=0.494 Sum_probs=28.5
Q ss_pred HHhCCcEEEECC-c-HHHHHHHHHHHHhCCCcEEEEe
Q 015243 9 AIKGAKVLMVGA-G-GIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 9 ~L~~~~VlvvG~-G-giG~ev~knLa~~Gv~~i~liD 43 (410)
.+.+++++|.|+ | |||..+++.|+..|.. +.++|
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~ 49 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISD 49 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEe
Confidence 355789999996 6 7999999999999975 77765
No 147
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=93.97 E-value=0.48 Score=45.64 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=28.8
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
.+++++|+|+||+|..++..|+..|. +++++|
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~ 147 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIAN 147 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 46789999999999999999999996 788876
No 148
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.96 E-value=0.15 Score=50.00 Aligned_cols=117 Identities=20% Similarity=0.308 Sum_probs=66.2
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCCeEEEEccC-C
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITAHHAN-V 91 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~-i 91 (410)
+|.+||+|.+|..++++|+..|.. +++.|.+.-....+. +.|-.-+....+.+... ++++-+...... .
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~-v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHE-VVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 799999999999999999999964 888886532211110 01211111222333322 345544444332 1
Q ss_pred CCCcch--HhhhccCcEEEEcc-CChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243 92 KDPKFN--VEFFKQFNVVLNGL-DNLDARRHVNRLCLAADVPLVESGTTGF 139 (410)
Q Consensus 92 ~~~~~~--~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~p~i~~g~~G~ 139 (410)
.+.... ...++.-++||++. -++.....+.+.+...++.++++.+.|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 111110 11234446788763 3444555567788888888998877764
No 149
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.94 E-value=0.23 Score=48.12 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=55.4
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
...+|.+||+|.+|..+++.|...|+ .++++.| |.. ..+++.+++ +. .+++.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~----------r~~--------~~~~~~l~~---~~--g~~~~-- 56 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN----------RSN--------ETRLQELHQ---KY--GVKGT-- 56 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC----------CCC--------HHHHHHHHH---hc--CceEe--
Confidence 45689999999999999999999983 2333332 110 112222222 11 23221
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEe
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVES 134 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~ 134 (410)
. ...+..+++|+||.|+-.......+..+... .+..+|+.
T Consensus 57 ~-------~~~e~~~~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~ 98 (279)
T PRK07679 57 H-------NKKELLTDANILFLAMKPKDVAEALIPFKEYIHNNQLIISL 98 (279)
T ss_pred C-------CHHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 1 1234567899999999887777777666532 34456653
No 150
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.90 E-value=0.54 Score=45.63 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=28.1
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+|+|+|+|++|+.++..|+..|. +++++|.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 379999999999999999999984 68998853
No 151
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.90 E-value=0.68 Score=44.79 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=50.1
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
+.+|.+||+|-+|..+++.|...|. .+|.+.|.+ ..+++.+++ +. .+++ ..
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~~l~~---~~--g~~~--~~ 55 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLKNASD---KY--GITI--TT 55 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHHHHHH---hc--CcEE--eC
Confidence 5689999999999999999999885 246655421 122222222 12 2222 11
Q ss_pred cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c 124 (410)
+ ..+..+++|+||.|+-....+..+.++.
T Consensus 56 ----~---~~e~~~~aDiIiLavkP~~~~~vl~~l~ 84 (272)
T PRK12491 56 ----N---NNEVANSADILILSIKPDLYSSVINQIK 84 (272)
T ss_pred ----C---cHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence 1 2245678999999997655666565554
No 152
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.85 E-value=0.3 Score=48.83 Aligned_cols=36 Identities=28% Similarity=0.511 Sum_probs=31.6
Q ss_pred HHhCCcEEEECC-cHHHHHHHHHHHH-hCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGA-GGIGCELLKTLAL-SGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~-GgiG~ev~knLa~-~Gv~~i~liD~ 44 (410)
.|.+++|+|+|+ |.+|+++++.|+. .|+.++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 477899999998 8999999999985 58999999864
No 153
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.82 E-value=0.17 Score=55.65 Aligned_cols=163 Identities=13% Similarity=0.144 Sum_probs=86.9
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sN----L~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
++|.|||+|.+|+.++..++..|.. ++|+|.+.-.... +.+. |=+.-.-|+...+...+.+.+ |+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~~~~~-l~~~~~~g~~~~~~~~~~~~~------i~~~- 384 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVP-VIMKDINQKALDLGMTEAAKL-LNKQVERGKIDGAKMAGVLSS------IRPT- 384 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhC------eEEe-
Confidence 5799999999999999999999975 9999955322111 0000 000001122111112222221 1111
Q ss_pred cCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCcc-ceEEEEeCCCCccccccCCCCCCC
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFL-GQVTVHVKGKTECYECQPKPAPKT 164 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~-G~v~~~~~~~t~c~~C~~~~~~~~ 164 (410)
..+ +-++++|+||.|+ .+.+.+..+-+.....-. .++.+.|.++. ..+.-......-+...++-.++..
T Consensus 385 -----~~~--~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~ 457 (715)
T PRK11730 385 -----LDY--AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHR 457 (715)
T ss_pred -----CCH--HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccc
Confidence 111 2358999999985 667777666555544322 35555544432 001001111122333333344455
Q ss_pred CCceeeccCCCcchHHHHHHHHHHHHHH
Q 015243 165 YPVCTITSTPSKFVHCIVWAKDLLFAKL 192 (410)
Q Consensus 165 ~p~cti~~~p~~~~h~i~~a~~~~f~~~ 192 (410)
.|...|...+.+....+..+.+ +...+
T Consensus 458 ~~lVEvv~g~~T~~~~~~~~~~-~~~~l 484 (715)
T PRK11730 458 MPLVEVIRGEKTSDETIATVVA-YASKM 484 (715)
T ss_pred cceEEeeCCCCCCHHHHHHHHH-HHHHh
Confidence 6777787777777888888887 34433
No 154
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.80 E-value=0.63 Score=38.27 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=58.5
Q ss_pred EEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCCC
Q 015243 15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKDP 94 (410)
Q Consensus 15 VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~ 94 (410)
|+|+|+|.+|-++++.|...| -.++++|.|.-. .+.+++.. +..+.++.++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~-----------------------~~~~~~~~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER-----------------------VEELREEG----VEVIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH-----------------------HHHHHHTT----SEEEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH-----------------------HHHHHhcc----cccccccchhh
Confidence 689999999999999999944 679999965421 12222221 23444555432
Q ss_pred -cchHhhhccCcEEEEccCChHHHHHHHHHHHH-CCCcEEE
Q 015243 95 -KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA-ADVPLVE 133 (410)
Q Consensus 95 -~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~-~~~p~i~ 133 (410)
.+...-+++++.|+.++++......+...+++ ++.+-+-
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRII 93 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEE
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEE
Confidence 12223467899999999988887777777776 4434333
No 155
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=93.77 E-value=0.16 Score=55.82 Aligned_cols=160 Identities=15% Similarity=0.213 Sum_probs=88.5
Q ss_pred CcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCcccc--C---C-CCCCCCchHHHHHHHHHHhhCCCCeEE
Q 015243 13 AKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQF--L---F-RQSHVGQSKAKVARDAVLKFRPQMSIT 85 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~--l---f-~~~diG~~Ka~~a~~~l~~~np~v~i~ 85 (410)
++|.|||+|.+|+.++-.++ ..|+. ++++|.+. ..+.|-. + + ..-.-|+-..+...+.+. +|+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~-V~l~d~~~---~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~i~ 379 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLP-VRIKDINP---QGINHALKYSWDLLDKKVKRRHLKPSERDKQMA------LIS 379 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCe-EEEEeCCH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHh------cEE
Confidence 67999999999999999999 88965 88998653 2121110 0 0 000001111111111111 121
Q ss_pred EEccCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccc-eEEEEeCCCCccccccCCCC
Q 015243 86 AHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPA 161 (410)
Q Consensus 86 ~~~~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G-~v~~~~~~~t~c~~C~~~~~ 161 (410)
.. . .+ +-++++|+||.|+ .+.+.+..+-....+.-. .++.+.|.+..- .+.-......-+...++-.+
T Consensus 380 ~~-----~-~~--~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P 451 (708)
T PRK11154 380 GT-----T-DY--RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSP 451 (708)
T ss_pred Ee-----C-Ch--HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCc
Confidence 11 1 11 3358999999985 667777766665555433 455555554321 11001112222344444445
Q ss_pred CCCCCceeeccCCCcchHHHHHHHHHHHHH
Q 015243 162 PKTYPVCTITSTPSKFVHCIVWAKDLLFAK 191 (410)
Q Consensus 162 ~~~~p~cti~~~p~~~~h~i~~a~~~~f~~ 191 (410)
+...|.+.|...|.+....+..+.+ +...
T Consensus 452 ~~~~~lVEvv~g~~Ts~~~~~~~~~-~~~~ 480 (708)
T PRK11154 452 VEKMPLVEVIPHAKTSAETIATTVA-LAKK 480 (708)
T ss_pred cccCceEEEECCCCCCHHHHHHHHH-HHHH
Confidence 5667888998888888888888887 3443
No 156
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.76 E-value=0.36 Score=46.00 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=29.8
Q ss_pred HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+++++++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r 39 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR 39 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence 367899999995 8999999999999998 5777763
No 157
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.72 E-value=0.33 Score=45.66 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=29.6
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+.+++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 36789999998 59999999999999997 4777764
No 158
>PRK07062 short chain dehydrogenase; Provisional
Probab=93.71 E-value=0.3 Score=46.24 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=52.6
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
++++.++|.|+ ||||.++++.|+..|.. +.+++.+. .+.+.+.+.+.+..|..++..+.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE-------------------ERLASAEARLREKFPGARLLAAR 65 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence 66788999985 79999999999999975 77766431 23444555566666666666666
Q ss_pred cCCCCCcchHh-------hhccCcEEEEcc
Q 015243 89 ANVKDPKFNVE-------FFKQFNVVLNGL 111 (410)
Q Consensus 89 ~~i~~~~~~~~-------~~~~~DvVi~a~ 111 (410)
.++++..-... -+...|++|++.
T Consensus 66 ~D~~~~~~v~~~~~~~~~~~g~id~li~~A 95 (265)
T PRK07062 66 CDVLDEADVAAFAAAVEARFGGVDMLVNNA 95 (265)
T ss_pred ecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 66643211111 134567776643
No 159
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.69 E-value=0.44 Score=49.17 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=60.3
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
...+|+|+|+|.+|..+++.|...|.. ++++|.|.= +.+ .+++..+++. ...++
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~-v~vid~~~~-------------------~~~----~~~~~~~~~~--~i~gd 283 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYS-VKLIERDPE-------------------RAE----ELAEELPNTL--VLHGD 283 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEECCHH-------------------HHH----HHHHHCCCCe--EEECC
Confidence 468899999999999999999998875 788874421 111 1222222332 23334
Q ss_pred CCCC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCc
Q 015243 91 VKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVP 130 (410)
Q Consensus 91 i~~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p 130 (410)
.++. .+...-++++|.|+.++++......+...|+..+.+
T Consensus 284 ~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 284 GTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK 324 (453)
T ss_pred CCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence 3322 122234578999999988777666666677776554
No 160
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=93.68 E-value=0.35 Score=47.47 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=28.9
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDM 44 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~ 44 (410)
..+|.|||+|.+|..+++.|...|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 4689999999999999999999997 46888874
No 161
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=93.65 E-value=0.4 Score=49.69 Aligned_cols=108 Identities=18% Similarity=0.243 Sum_probs=74.2
Q ss_pred CcEEEECCcHH-HHHHHHHHHH----hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 13 AKVLMVGAGGI-GCELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 13 ~~VlvvG~Ggi-G~ev~knLa~----~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
.||.+||+|+. +-++++.|+. .++++|.|+|-|. ..|.+ =...+++.+++..+.++|+..
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~~------------v~~l~~~~~~~~g~~~~v~~T 65 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQEK------------VAEAVKILFKENYPEIKFVYT 65 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEE
Confidence 47999999986 2366677764 4568999999554 22211 122345555666778888877
Q ss_pred ccCCCCCcchHhhhccCcEEEEc--cCChHHHHHHHHHHHHCCCcEEEecccCccceEE
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNG--LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVT 144 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a--~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~ 144 (410)
.++ .+-++++|+||++ ....++|..--+...++|+ +-..|.|..|...
T Consensus 66 tdr-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~~ 115 (437)
T cd05298 66 TDP-------EEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFAY 115 (437)
T ss_pred CCH-------HHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHHH
Confidence 543 3557899999996 4667888888889999996 5456777777443
No 162
>PRK08655 prephenate dehydrogenase; Provisional
Probab=93.62 E-value=0.29 Score=50.67 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=54.4
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
++|+|+| +|++|..+++.|...|. +++++|.+. .++...+ .+. ++.+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~-------------------~~~~~~a---~~~--gv~~------- 48 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDP-------------------KKGKEVA---KEL--GVEY------- 48 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC-EEEEEECCh-------------------HHHHHHH---HHc--CCee-------
Confidence 3799997 89999999999999996 577777431 1111111 111 1111
Q ss_pred CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEecc
Q 015243 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVESGT 136 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~g~ 136 (410)
.. ...+.+.++|+||.|+........+.+.... .+..+++.++
T Consensus 49 ~~--~~~e~~~~aDvVIlavp~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 49 AN--DNIDAAKDADIVIISVPINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred cc--CHHHHhccCCEEEEecCHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 00 1234567889999998655555555555432 3455777665
No 163
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=93.62 E-value=0.55 Score=45.48 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=27.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+|.|||+|.+|..+++.|...|. +++++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence 79999999999999999999986 58888753
No 164
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.61 E-value=0.1 Score=47.04 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=31.2
Q ss_pred HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
..|.+++|.|+|+|.||.++++.|...|+ ++..+|..
T Consensus 32 ~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~ 68 (178)
T PF02826_consen 32 RELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRS 68 (178)
T ss_dssp S-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESS
T ss_pred cccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEeccc
Confidence 36789999999999999999999999998 68888743
No 165
>PRK07576 short chain dehydrogenase; Provisional
Probab=93.61 E-value=0.2 Score=47.68 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=31.6
Q ss_pred HHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 7 LEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 7 q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
..++.+++++|.|+ |+||.++++.|+..|.. +.++|.+
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~ 42 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS 42 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 34678899999985 89999999999999865 7777743
No 166
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=93.59 E-value=0.32 Score=48.34 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=53.8
Q ss_pred CCcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 12 GAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
.++++|+|+|+.|-..++.|. ..|+.+++|.+. ...|++.+++.+.+..+ +++... .+
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R-------------------~~~~a~~~a~~~~~~~g-~~v~~~-~~ 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWAR-------------------DSAKAEALALQLSSLLG-IDVTAA-TD 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECC-------------------CHHHHHHHHHHHHhhcC-ceEEEe-CC
Confidence 468999999999999999997 578889999752 23477777777764332 344332 11
Q ss_pred CCCCcchHhhhccCcEEEEccCC
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
..+.+.++|+|++|+.+
T Consensus 188 ------~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 ------PRAAMSGADIIVTTTPS 204 (326)
T ss_pred ------HHHHhccCCEEEEecCC
Confidence 23556899999999865
No 167
>PLN02688 pyrroline-5-carboxylate reductase
Probab=93.59 E-value=0.53 Score=45.02 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=48.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
.+|.+||+|.+|..++++|...|. ..+++.+ +| ...|.+. +.+. .+.+..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~---------~r---------~~~~~~~----~~~~--g~~~~~--- 53 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTAD---------DS---------NPARRDV----FQSL--GVKTAA--- 53 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEe---------CC---------CHHHHHH----HHHc--CCEEeC---
Confidence 479999999999999999999985 2455541 01 1123222 2222 233211
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c 124 (410)
...+..+++|+||.|+.....+..+..+.
T Consensus 54 ------~~~e~~~~aDvVil~v~~~~~~~vl~~l~ 82 (266)
T PLN02688 54 ------SNTEVVKSSDVIILAVKPQVVKDVLTELR 82 (266)
T ss_pred ------ChHHHHhcCCEEEEEECcHHHHHHHHHHH
Confidence 12244678999999997655566655543
No 168
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.54 E-value=0.55 Score=48.86 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=34.4
Q ss_pred HHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 5 e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
|.-.-+.+++|+|+|.|..|..+++.|...|. .+++.|.+.
T Consensus 7 ~~~~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 7 EFKKFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred HHhhhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 44456778999999999999999999999997 588888543
No 169
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.54 E-value=0.31 Score=52.86 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=62.4
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
+.+|+|+|+|.+|..+++.|...|+. ++++|.|.- +++.+ ++. + ...+.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~-------------------~v~~~----~~~--g--~~v~~GDa 451 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVK-MTVLDHDPD-------------------HIETL----RKF--G--MKVFYGDA 451 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCC-EEEEECCHH-------------------HHHHH----Hhc--C--CeEEEEeC
Confidence 47899999999999999999999985 889897652 22222 221 2 23455555
Q ss_pred CCCcc-hHhhhccCcEEEEccCChHHHHHHHHHHHHC
Q 015243 92 KDPKF-NVEFFKQFNVVLNGLDNLDARRHVNRLCLAA 127 (410)
Q Consensus 92 ~~~~~-~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~ 127 (410)
++... ...-++++|+||.++||.+....+-..+++.
T Consensus 452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 43321 1223568999999999998888888888775
No 170
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=93.52 E-value=0.26 Score=48.36 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=28.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+|.|+|+|.+|+.++..|+..|.. ++++|.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHD-VTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCE-EEEEECC
Confidence 4799999999999999999999875 7888754
No 171
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.50 E-value=0.47 Score=47.28 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=64.6
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
+++.++|+|.| +|=+|+.+++.|...|. +++.+|...-...+....+ ...... .+.-++..+
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~---------------~~~~~~-~~~~~~~~~ 74 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFSTGYQHNLDDV---------------RTSVSE-EQWSRFIFI 74 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCcchhhhhhh---------------hhcccc-ccCCceEEE
Confidence 45669999998 59999999999999985 5777775321111000000 000000 000134445
Q ss_pred ccCCCCCcchHhhhccCcEEEEccC-----------------ChHHHHHHHHHHHHCCC-cEEEecccCccce
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADV-PLVESGTTGFLGQ 142 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~D-----------------n~~~r~~i~~~c~~~~~-p~i~~g~~G~~G~ 142 (410)
..++.+...-...++++|+||.+.. |...-..+-+.|++.++ .++..++.+.+|.
T Consensus 75 ~~Di~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~ 147 (348)
T PRK15181 75 QGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGD 147 (348)
T ss_pred EccCCCHHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCC
Confidence 5565443222345667787777431 11122344567777775 6888877655553
No 172
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.49 E-value=0.26 Score=48.53 Aligned_cols=107 Identities=21% Similarity=0.404 Sum_probs=64.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC--------cccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeE
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE--------VSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSI 84 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve--------~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i 84 (410)
++|.|||+|-+|+-++..++..|+. +++.|...-. ..+|.|+. .-|+-+.+.....+.++.|...+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~-V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~~ 77 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYD-VVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTDL 77 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCc-eEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCch
Confidence 6899999999999999999996655 8888865111 11222221 11333333334444444332211
Q ss_pred EEEccCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCc
Q 015243 85 TAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGF 139 (410)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~ 139 (410)
.-++++|+||.|. .|.+.+..+-+..-..-. .++.+.|.+.
T Consensus 78 --------------~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl 121 (307)
T COG1250 78 --------------AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSL 121 (307)
T ss_pred --------------hHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCC
Confidence 2468999999975 667776665554444433 3566666554
No 173
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.47 E-value=0.25 Score=49.91 Aligned_cols=96 Identities=13% Similarity=0.208 Sum_probs=55.5
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCC------CcEEEEeCCccCcccCccccCCCCCCC-CchHHHHHHHHH--HhhCCC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGF------QDIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAV--LKFRPQ 81 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~di-G~~Ka~~a~~~l--~~~np~ 81 (410)
...+|.|+|+|+.|+.++..|+..|. .++++...|. ++ |+.-++.+.+.= .+.-|+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~---------------~~~~~~~~~~in~~~~N~~ylp~ 74 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE---------------IVEGEKLSDIINTKHENVKYLPG 74 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc---------------cccchHHHHHHHhcCCCcccCCC
Confidence 35689999999999999999999883 3555553221 11 222222221110 011233
Q ss_pred CeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH
Q 015243 82 MSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC 124 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c 124 (410)
+++ +.++.-.....+.++++|+|+.++.....|..+.++.
T Consensus 75 ~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~ 114 (365)
T PTZ00345 75 IKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIK 114 (365)
T ss_pred CcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhc
Confidence 322 2222111112356789999999998877777777764
No 174
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.46 E-value=0.35 Score=47.40 Aligned_cols=32 Identities=34% Similarity=0.678 Sum_probs=29.5
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.||.|+|+|.+|+.++..++..|.+.+.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999985
No 175
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.44 E-value=0.17 Score=49.53 Aligned_cols=32 Identities=28% Similarity=0.506 Sum_probs=27.3
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
+|.|||+|.+|+.++.+|+..|. ++.+.|.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999995 467777543
No 176
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.42 E-value=0.28 Score=45.76 Aligned_cols=35 Identities=23% Similarity=0.540 Sum_probs=30.0
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+++++|+|.| .|++|.++++.|+..|.. +++++.+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~ 38 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN 38 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence 5678999998 589999999999999976 8887744
No 177
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.41 E-value=0.65 Score=46.13 Aligned_cols=35 Identities=31% Similarity=0.305 Sum_probs=28.8
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+++++|+|.| +|.||+.+++.|+..|. +++++|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 4578999999 58899999999999995 47776644
No 178
>PRK07340 ornithine cyclodeaminase; Validated
Probab=93.38 E-value=0.28 Score=48.34 Aligned_cols=76 Identities=9% Similarity=0.101 Sum_probs=54.8
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
+...++++|+|+|+.|...++.+.. .|+.++.+.|. ...|++.+++.+++.. +.+.
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r-------------------~~~~a~~~a~~~~~~~--~~~~-- 178 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGR-------------------TAASAAAFCAHARALG--PTAE-- 178 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcC-------------------CHHHHHHHHHHHHhcC--CeeE--
Confidence 3456889999999999999999975 68888888752 2457777777776542 2222
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCC
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
... ..+.+.++|+|+.|+-+
T Consensus 179 ~~~------~~~av~~aDiVitaT~s 198 (304)
T PRK07340 179 PLD------GEAIPEAVDLVVTATTS 198 (304)
T ss_pred ECC------HHHHhhcCCEEEEccCC
Confidence 111 23557899999999875
No 179
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.33 E-value=0.54 Score=46.49 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=57.5
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.+.+++|.|||.|.||.++++.|...|+. +..+|... ... +.+. ...
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~-V~~~~~~~-------------~~~-----------------~~~~--~~~ 179 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFP-LRCWSRSR-------------KSW-----------------PGVQ--SFA 179 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeCCC-------------CCC-----------------CCce--eec
Confidence 47889999999999999999999998874 66666311 000 0111 110
Q ss_pred cCCCCCcchHhhhccCcEEEEccC-ChHHHHHHHHHHHH---CCCcEEEec
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLA---ADVPLVESG 135 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~---~~~p~i~~g 135 (410)
.. ..-++++.++|+|+.++. +.+++..+++-... .+.-+|+.+
T Consensus 180 -~~---~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 180 -GR---EELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred -cc---ccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 01 113477899999999764 56677777754332 234456654
No 180
>PRK06194 hypothetical protein; Provisional
Probab=93.19 E-value=0.43 Score=45.77 Aligned_cols=34 Identities=24% Similarity=0.462 Sum_probs=28.8
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+++++++|.| .|+||.++++.|+..|. +++++|.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5577899998 68999999999999997 4788774
No 181
>PRK07680 late competence protein ComER; Validated
Probab=93.19 E-value=0.55 Score=45.22 Aligned_cols=89 Identities=19% Similarity=0.277 Sum_probs=53.2
Q ss_pred cEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
+|.|||+|.+|+.++..|...|. ..+++.|.+. .+++. +.+..+.+.+..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~~----~~~~~~g~~~~~---- 54 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAYH----IKERYPGIHVAK---- 54 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHHH----HHHHcCCeEEEC----
Confidence 69999999999999999999985 3566665321 12222 222223332211
Q ss_pred CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH--CCCcEEEe
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA--ADVPLVES 134 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~--~~~p~i~~ 134 (410)
...+...++|+||.|+-....+..+.++... .+..+++.
T Consensus 55 -----~~~~~~~~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~ 95 (273)
T PRK07680 55 -----TIEEVISQSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSI 95 (273)
T ss_pred -----CHHHHHHhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 1234567899999998655555555554322 23444544
No 182
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.18 E-value=0.24 Score=49.17 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=30.4
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCC-cEEEEeC
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~-~i~liD~ 44 (410)
++..||.|+|+ |.+|+.++..|+..|.. ++.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 45669999998 99999999999988874 7999995
No 183
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.16 E-value=0.5 Score=45.95 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=26.9
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
++|+|.| +|.+|..+++.|+..|. +++.+|..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 3689998 59999999999999995 68887754
No 184
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.16 E-value=0.27 Score=49.35 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=56.0
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 92 (410)
.+|+|+|+|++|.-.+..+...|.+.+.++|.+. .|.+.|++.. ..-.+.......
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~----g~~~~~~~~~~~- 225 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAG----GADVVVNPSEDD- 225 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhC----CCeEeecCcccc-
Confidence 3899999999999999999999999999997432 2333333321 100010000000
Q ss_pred CCcchHhhh--ccCcEEEEccCChHHHHHHHHHHHHCCC
Q 015243 93 DPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADV 129 (410)
Q Consensus 93 ~~~~~~~~~--~~~DvVi~a~Dn~~~r~~i~~~c~~~~~ 129 (410)
......+.- ..+|+||.|+.+..+.....++++..+.
T Consensus 226 ~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~ 264 (350)
T COG1063 226 AGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGT 264 (350)
T ss_pred HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCE
Confidence 000000111 4699999999987766666666666554
No 185
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.12 E-value=0.48 Score=44.55 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=28.1
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+++++++|.|+ ||||.++++.|+..|.. +.+++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~-V~~~~ 40 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQ-VAIAA 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEc
Confidence 56788999985 89999999999999974 66665
No 186
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.09 E-value=0.47 Score=46.12 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=29.1
Q ss_pred HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+.+++|+|.|+ ||||.++++.|+..|. ++.++|.
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R 72 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR 72 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence 456788999984 9999999999999996 5777663
No 187
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.09 E-value=0.13 Score=51.07 Aligned_cols=36 Identities=28% Similarity=0.471 Sum_probs=32.3
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.++.+|.|||+|.+|..++..|+..|+..+.|+|-+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 357899999999999999999999998889999953
No 188
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.03 E-value=0.59 Score=46.32 Aligned_cols=99 Identities=23% Similarity=0.351 Sum_probs=57.1
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC--ccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD--TIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D--~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
++|.|+|+|+.|+.+++-|+..| ..+++-..| .++.=|-.|+- .++-|++.+ +..
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N-------------------~~yLp~i~l---p~~ 58 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETREN-------------------PKYLPGILL---PPN 58 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCcC-------------------ccccCCccC---Ccc
Confidence 68999999999999999999999 445554322 22211111000 011122221 111
Q ss_pred CCCCcchHhhhccCcEEEEccCChHHHHHHHHHH--HHCCCcEEEe
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC--LAADVPLVES 134 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c--~~~~~p~i~~ 134 (410)
+.-.....+-.+++|+|+.++.+.-.|..+.++- ...+.+++.+
T Consensus 59 l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~ 104 (329)
T COG0240 59 LKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSA 104 (329)
T ss_pred cccccCHHHHHhcCCEEEEECChHHHHHHHHHHhhhccCCCeEEEE
Confidence 1111113455678999999999887787777762 2344555554
No 189
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=93.01 E-value=0.38 Score=46.87 Aligned_cols=104 Identities=21% Similarity=0.274 Sum_probs=57.8
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
+||||.|+ |-||+.+++.|...| +++.+|...- +...|+-. .+.+.+.+++..|++=|+. ...
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~----------~~~~Dl~d--~~~~~~~~~~~~~D~Vih~--Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG--NLIALDVHST----------DYCGDFSN--PEGVAETVRKIRPDVIVNA--AAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC--CEEEeccccc----------cccCCCCC--HHHHHHHHHhcCCCEEEEC--Ccc
Confidence 37999985 999999999999888 5777774310 11234433 2334455555555543322 111
Q ss_pred CCCc---chHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCcc
Q 015243 92 KDPK---FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFL 140 (410)
Q Consensus 92 ~~~~---~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~ 140 (410)
.... .+.+.. -..|...-..+-+.|...++++|..++...+
T Consensus 65 ~~~~~~~~~~~~~--------~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy 108 (299)
T PRK09987 65 TAVDKAESEPEFA--------QLLNATSVEAIAKAANEVGAWVVHYSTDYVF 108 (299)
T ss_pred CCcchhhcCHHHH--------HHHHHHHHHHHHHHHHHcCCeEEEEccceEE
Confidence 1000 000000 0113344456777888889999988765433
No 190
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=92.99 E-value=0.13 Score=53.00 Aligned_cols=36 Identities=36% Similarity=0.564 Sum_probs=32.9
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 367899999999999999999999999999999874
No 191
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.96 E-value=0.67 Score=45.97 Aligned_cols=32 Identities=41% Similarity=0.696 Sum_probs=28.4
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 589999999999999999999995 58888753
No 192
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=92.92 E-value=0.97 Score=43.54 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=25.0
Q ss_pred cEEEEC-CcHHHHHHHHHHHHhCC-CcEEEEeC
Q 015243 14 KVLMVG-AGGIGCELLKTLALSGF-QDIHIIDM 44 (410)
Q Consensus 14 ~VlvvG-~GgiG~ev~knLa~~Gv-~~i~liD~ 44 (410)
+|+|.| .|.+|..+++.|...|- .+++++|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 588998 59999999999998874 35777653
No 193
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.90 E-value=0.14 Score=47.16 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=31.1
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
|++++|+|+|.|.+|..+++.|...|. +++++|.+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 678999999999999999999999997 57787754
No 194
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.88 E-value=0.48 Score=46.66 Aligned_cols=34 Identities=38% Similarity=0.474 Sum_probs=30.6
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.++|+|.|+|+||--...-+-.+|.+++.++|-.
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~ 203 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLV 203 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecC
Confidence 6799999999999998888889999999999843
No 195
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=92.85 E-value=0.29 Score=53.76 Aligned_cols=157 Identities=17% Similarity=0.212 Sum_probs=86.9
Q ss_pred CcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHH-HHHHHHh--hCCC------C
Q 015243 13 AKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKV-ARDAVLK--FRPQ------M 82 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~-a~~~l~~--~np~------v 82 (410)
++|.|||+|.+|+.++..++ ..|+. ++|+|.+.- .+.+- ..+... +.+.+++ +.+. -
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~-V~l~d~~~~---~l~~~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~ 371 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIP-VRIKDINPQ---GINNA---------LKYAWKLLDKGVKRRHMTPAERDNQMA 371 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCe-EEEEeCCHH---HHHHH---------HHHHHHHHHHHHHcCCCCHHHHHHHHc
Confidence 47999999999999999998 48975 889986532 12111 111111 1111110 0000 0
Q ss_pred eEEEEccCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccc-eEEEEeCCCCccccccC
Q 015243 83 SITAHHANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQP 158 (410)
Q Consensus 83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G-~v~~~~~~~t~c~~C~~ 158 (410)
.|+.. . . .+-++++|+||.|+ .+.+.+..+-......-. .++.+.|.++.- .+.-......-+...++
T Consensus 372 ~i~~~-----~-~--~~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~Hf 443 (699)
T TIGR02440 372 LITGT-----T-D--YRGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHY 443 (699)
T ss_pred CeEEe-----C-C--hHHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEec
Confidence 12211 1 1 13368999999985 567776666555544433 355555544321 01001112222344444
Q ss_pred CCCCCCCCceeeccCCCcchHHHHHHHHHHHHH
Q 015243 159 KPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAK 191 (410)
Q Consensus 159 ~~~~~~~p~cti~~~p~~~~h~i~~a~~~~f~~ 191 (410)
-.++...|...+...+.+....+.++.+ ++..
T Consensus 444 fnP~~~~~lVEvv~g~~T~~~~~~~~~~-~~~~ 475 (699)
T TIGR02440 444 FSPVEKMPLVEVIPHAGTSEQTIATTVA-LAKK 475 (699)
T ss_pred CCccccCceEEEeCCCCCCHHHHHHHHH-HHHH
Confidence 4455666888888888888888999887 4554
No 196
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.81 E-value=0.35 Score=46.17 Aligned_cols=88 Identities=18% Similarity=0.193 Sum_probs=50.3
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
+|.+||+|.+|..+++.|...|.. .+.+.|. ...|++.+++ ..+.+.+.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r-------------------~~~~~~~l~~----~~~~~~~~------ 52 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR-------------------NAQIAARLAE----RFPKVRIA------ 52 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECC-------------------CHHHHHHHHH----HcCCceEe------
Confidence 699999999999999999998853 2333321 1223332222 22322221
Q ss_pred CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~ 133 (410)
. ...+..+++|+|+.|+........+.......+..+|+
T Consensus 53 ~---~~~~~~~~aDvVilav~p~~~~~vl~~l~~~~~~~vis 91 (258)
T PRK06476 53 K---DNQAVVDRSDVVFLAVRPQIAEEVLRALRFRPGQTVIS 91 (258)
T ss_pred C---CHHHHHHhCCEEEEEeCHHHHHHHHHHhccCCCCEEEE
Confidence 1 12345678999999987544555454432223444454
No 197
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.79 E-value=1.1 Score=41.83 Aligned_cols=83 Identities=27% Similarity=0.232 Sum_probs=49.9
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC--CC--eEEEE
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP--QM--SITAH 87 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np--~v--~i~~~ 87 (410)
++|.|+| +|.+|+.+++.|+..| .++++.|.+ ..|++.+++....... .. ++...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g~~~~~~~~ 60 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGGSDIKVTGA 60 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccCCCceEEEe
Confidence 3799997 8999999999999998 567776532 1233333332211111 01 11111
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHH
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRL 123 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~ 123 (410)
...+...++|+||.|+-....+..+.++
T Consensus 61 --------~~~ea~~~aDvVilavp~~~~~~~l~~l 88 (219)
T TIGR01915 61 --------DNAEAAKRADVVILAVPWDHVLKTLESL 88 (219)
T ss_pred --------ChHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence 1134567899999998766665555544
No 198
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.74 E-value=0.5 Score=44.00 Aligned_cols=34 Identities=26% Similarity=0.571 Sum_probs=29.4
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
|.+++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999996 9999999999999997 4777773
No 199
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=92.71 E-value=0.26 Score=51.56 Aligned_cols=122 Identities=13% Similarity=0.235 Sum_probs=69.0
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCch--HHHHHHHHHHhh-CCCCeEEEEcc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS--KAKVARDAVLKF-RPQMSITAHHA 89 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~--Ka~~a~~~l~~~-np~v~i~~~~~ 89 (410)
++|.|||+|..|..++.+|+..|. ++++.|.+.=....+.... . .-|.. -+..+++.+..+ .|++-+.....
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~---~-~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKA---K-EGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhh---h-hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 5888886443222221100 0 00100 122234444433 34433332211
Q ss_pred -CCCCCcc--hHhhhccCcEEEEccCC-hHHHHHHHHHHHHCCCcEEEecccCc
Q 015243 90 -NVKDPKF--NVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTGF 139 (410)
Q Consensus 90 -~i~~~~~--~~~~~~~~DvVi~a~Dn-~~~r~~i~~~c~~~~~p~i~~g~~G~ 139 (410)
...+... ....++.-|+||++... ++.-....+.+...++-++++++.|.
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 1111111 11234566899997643 44444445777888999999998874
No 200
>PLN02206 UDP-glucuronate decarboxylase
Probab=92.63 E-value=0.95 Score=46.97 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=60.6
Q ss_pred hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+++||+|.| .|-||+.+++.|...|.. +..+|..... + +... ...+ .++ +++.+..
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~-V~~ld~~~~~----------------~-~~~~-~~~~--~~~--~~~~i~~ 174 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTG----------------R-KENV-MHHF--SNP--NFELIRH 174 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCE-EEEEeCCCcc----------------c-hhhh-hhhc--cCC--ceEEEEC
Confidence 568999998 699999999999999864 6666642210 0 0000 0000 122 2333334
Q ss_pred CCCCCcchHhhhccCcEEEEccC---------Ch--------HHHHHHHHHHHHCCCcEEEecccCccc
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLD---------NL--------DARRHVNRLCLAADVPLVESGTTGFLG 141 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~D---------n~--------~~r~~i~~~c~~~~~p~i~~g~~G~~G 141 (410)
++.+ ..+.++|+||.+.. +. ..-..+-+.|++.++++|..++...+|
T Consensus 175 D~~~-----~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg 238 (442)
T PLN02206 175 DVVE-----PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 238 (442)
T ss_pred CccC-----hhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhC
Confidence 4422 23457899888542 11 112345567888888999888766554
No 201
>PRK08291 ectoine utilization protein EutC; Validated
Probab=92.63 E-value=0.57 Score=46.65 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=52.7
Q ss_pred CCcEEEECCcHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 12 GAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
.++++|+|+|+.|...+..|.. .|+.++++++. ...|++.+++.+++.. .+++.... +
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R-------------------~~~~a~~l~~~~~~~~-g~~v~~~~-d 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWAR-------------------DAAKAEAYAADLRAEL-GIPVTVAR-D 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcC-------------------CHHHHHHHHHHHhhcc-CceEEEeC-C
Confidence 4689999999999999999985 57889999752 2346777777665432 23433321 1
Q ss_pred CCCCcchHhhhccCcEEEEccCC
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
..+.+.++|+|++|+..
T Consensus 191 ------~~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 ------VHEAVAGADIIVTTTPS 207 (330)
T ss_pred ------HHHHHccCCEEEEeeCC
Confidence 23556789999999865
No 202
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=92.61 E-value=0.51 Score=41.05 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=50.9
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
+.|+|.| .||||-++++.|+..|-.++.+++.+ .-..+.+.+.+.+...+ .++.....++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D~ 61 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECDL 61 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESET
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--cccccccccc
Confidence 3678887 88999999999999998889888644 11234445555555433 6777776666
Q ss_pred CCCcchH-------hhhccCcEEEEc
Q 015243 92 KDPKFNV-------EFFKQFNVVLNG 110 (410)
Q Consensus 92 ~~~~~~~-------~~~~~~DvVi~a 110 (410)
++..... +.+...|++|++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~ld~li~~ 87 (167)
T PF00106_consen 62 SDPESIRALIEEVIKRFGPLDILINN 87 (167)
T ss_dssp TSHHHHHHHHHHHHHHHSSESEEEEE
T ss_pred cccccccccccccccccccccccccc
Confidence 4321111 123456677665
No 203
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=92.59 E-value=0.38 Score=52.99 Aligned_cols=158 Identities=13% Similarity=0.103 Sum_probs=83.6
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCccc----CccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN----LNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sN----L~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
++|.|||+|.+|+.++..++..|+. ++|+|.+.=.... +.+. +=..-+-|+...+.+.+.+.++ +..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i------~~~- 384 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTP-IVMKDINQHSLDLGLTEAAKL-LNKQVERGRITPAKMAGVLNGI------TPT- 384 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHH-HHHHHHcCCCChhhHHHHHhCe------EEe-
Confidence 4799999999999999999999975 8999865432211 0000 0000011221112222222222 111
Q ss_pred cCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccc-eEEEEeCCCCccccccCCCCCCC
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKT 164 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G-~v~~~~~~~t~c~~C~~~~~~~~ 164 (410)
. +.+-++++|+||.|+ .+.+.+..+-+.....-. .++.+.|.+..- .+........-+..-++-.++..
T Consensus 385 -----~--~~~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~ 457 (714)
T TIGR02437 385 -----L--SYAGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHR 457 (714)
T ss_pred -----C--CHHHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCccc
Confidence 0 113368999999985 567776666555544333 345555444321 00000111111233233334445
Q ss_pred CCceeeccCCCcchHHHHHHHH
Q 015243 165 YPVCTITSTPSKFVHCIVWAKD 186 (410)
Q Consensus 165 ~p~cti~~~p~~~~h~i~~a~~ 186 (410)
.|.-.|...+.+....+..+.+
T Consensus 458 ~~lvEvv~g~~Ts~~~~~~~~~ 479 (714)
T TIGR02437 458 MPLVEVIRGEKSSDETIATVVA 479 (714)
T ss_pred CceEeecCCCCCCHHHHHHHHH
Confidence 5777777777777778888877
No 204
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=92.59 E-value=0.41 Score=50.54 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=28.9
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
=++|.|||+|.+|+.++.+|+..|.. ++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~-V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQ-VLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCC
Confidence 46799999999999999999999965 8888754
No 205
>PRK08339 short chain dehydrogenase; Provisional
Probab=92.51 E-value=0.65 Score=44.20 Aligned_cols=34 Identities=24% Similarity=0.467 Sum_probs=28.6
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
|+++.++|.|+ ||||.++++.|+..|. ++.++|.
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r 40 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSR 40 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 56788899985 7999999999999997 4777763
No 206
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=92.48 E-value=0.83 Score=48.05 Aligned_cols=122 Identities=18% Similarity=0.268 Sum_probs=70.0
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCch---HHHHHHHHHHhh-CCCCeEEEEc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQS---KAKVARDAVLKF-RPQMSITAHH 88 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~---Ka~~a~~~l~~~-np~v~i~~~~ 88 (410)
.+|.+||+|..|..+++||+..|.. +++.|.+.=....+... ...-|.. -+...++.+..+ .|++-+....
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~-V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCe-EEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 4799999999999999999999974 88877542111111100 0000211 122233444332 2554444332
Q ss_pred cCC-CCCcc--hHhhhccCcEEEEccCC-hHHHHHHHHHHHHCCCcEEEecccCc
Q 015243 89 ANV-KDPKF--NVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESGTTGF 139 (410)
Q Consensus 89 ~~i-~~~~~--~~~~~~~~DvVi~a~Dn-~~~r~~i~~~c~~~~~p~i~~g~~G~ 139 (410)
..- .+..+ ....++.-|+||++... ++.-..+.+.+.+.++.|+++++.|.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 221 01111 01224556899997544 55566668888899999999998864
No 207
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=92.47 E-value=0.66 Score=43.67 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=27.2
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~ 35 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN 35 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 56789998 57999999999999996 57787743
No 208
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=92.43 E-value=1.1 Score=44.36 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=26.7
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++|+|.| .|.+|+.+++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 4799998 5889999999999999776666663
No 209
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=92.41 E-value=1.1 Score=43.15 Aligned_cols=89 Identities=18% Similarity=0.146 Sum_probs=51.9
Q ss_pred CcEEEECCcHHHHHHHHHHHHhC--CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~G--v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
.||.|||+|.+|..+++.|...+ +.-+.++|.+ ..|++.+++ ... .. .+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~-------------------~~~a~~~a~---~~~--~~--~~--- 52 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN-------------------LEKAENLAS---KTG--AK--AC--- 52 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC-------------------HHHHHHHHH---hcC--Ce--eE---
Confidence 47999999999999999998764 3333444432 123333322 111 11 11
Q ss_pred CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
+ . .++++.+.|+|+.|+.. .....+-..+.+.++.++...
T Consensus 53 -~--~-~~ell~~~DvVvi~a~~-~~~~~~~~~al~~Gk~Vvv~s 92 (265)
T PRK13304 53 -L--S-IDELVEDVDLVVECASV-NAVEEVVPKSLENGKDVIIMS 92 (265)
T ss_pred -C--C-HHHHhcCCCEEEEcCCh-HHHHHHHHHHHHcCCCEEEEc
Confidence 1 1 23445789999998754 333344445556788776643
No 210
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.38 E-value=0.51 Score=50.91 Aligned_cols=89 Identities=12% Similarity=0.224 Sum_probs=62.1
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
+.+|+|+|.|.+|..+++.|...|.. ++++|.|.- +++. +++. ....+.++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~-vvvID~d~~-------------------~v~~----~~~~----g~~v~~GDa 451 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMR-ITVLERDIS-------------------AVNL----MRKY----GYKVYYGDA 451 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCC-EEEEECCHH-------------------HHHH----HHhC----CCeEEEeeC
Confidence 46899999999999999999999985 899996641 2222 2222 223445555
Q ss_pred CCCc-chHhhhccCcEEEEccCChHHHHHHHHHHHHCC
Q 015243 92 KDPK-FNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD 128 (410)
Q Consensus 92 ~~~~-~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~ 128 (410)
++.. ....-++++|.||.++||.+....+-..+++.+
T Consensus 452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 4322 112235789999999999888888878887753
No 211
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.35 E-value=0.2 Score=48.51 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=30.0
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+++|+|+|+||.|..++..|...|+++|+|++
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~n 153 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVA 153 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 35899999999999999999999999999987
No 212
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.35 E-value=0.17 Score=49.69 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=29.2
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
..||+|+|+|++|+.++-.|+++|. .+++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 5689999999999999999999995 58888753
No 213
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=92.35 E-value=0.18 Score=47.19 Aligned_cols=38 Identities=32% Similarity=0.460 Sum_probs=34.6
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
.|+.++|+|.|.|.+|..+++.|...|...+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 46889999999999999999999999999999999653
No 214
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=92.34 E-value=0.21 Score=42.74 Aligned_cols=84 Identities=17% Similarity=0.274 Sum_probs=46.1
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
=.+.||.|||+|-+|..+++.|...|.. +.-+ |. +....++.+...-+...+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~~--- 61 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHE-VVGV---------------YS-------RSPASAERAAAFIGAGAILD--- 61 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSE-EEEE---------------SS-------CHH-HHHHHHC--TT--------
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCe-EEEE---------------Ee-------CCcccccccccccccccccc---
Confidence 3567899999999999999999999953 3322 21 12223444444444433221
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHH
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLA 126 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~ 126 (410)
..+...++|+|+.++-+........+++..
T Consensus 62 -------~~~~~~~aDlv~iavpDdaI~~va~~La~~ 91 (127)
T PF10727_consen 62 -------LEEILRDADLVFIAVPDDAIAEVAEQLAQY 91 (127)
T ss_dssp -------TTGGGCC-SEEEE-S-CCHHHHHHHHHHCC
T ss_pred -------cccccccCCEEEEEechHHHHHHHHHHHHh
Confidence 124568899999998665665555565543
No 215
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.31 E-value=0.63 Score=43.14 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=26.7
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li 42 (410)
|++++++|.| .|++|.++++.|+..|.. +.++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~ 35 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAK-VVIA 35 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEE
Confidence 6678999998 589999999999999976 4444
No 216
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=92.28 E-value=0.34 Score=50.59 Aligned_cols=122 Identities=15% Similarity=0.213 Sum_probs=68.2
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhh-CCCCeEEEEcc-CC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKF-RPQMSITAHHA-NV 91 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~-~i 91 (410)
.|.+||+|.+|..++.+|+..|. ++++.|.+.-....+...+ .. .-+-.-+...++.+..+ .|++-+..... ..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~--~~-g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~ 76 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH--AK-GKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP 76 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc--cC-CCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence 47899999999999999999997 4888886543333222110 00 00000111223333332 35544444332 11
Q ss_pred CCCcc--hHhhhccCcEEEEccC-ChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243 92 KDPKF--NVEFFKQFNVVLNGLD-NLDARRHVNRLCLAADVPLVESGTTGF 139 (410)
Q Consensus 92 ~~~~~--~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~~~~p~i~~g~~G~ 139 (410)
.+... ....+..-|+||++.. .+..-....+.+...++-++++++.|.
T Consensus 77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 11111 1123455689999764 334333345567788999999998873
No 217
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=92.26 E-value=0.17 Score=50.42 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=32.5
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
.|.+++|+|||+|-+|..++++|...|+++|+++.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~n 205 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCS 205 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEc
Confidence 47789999999999999999999999999999964
No 218
>PRK09186 flagellin modification protein A; Provisional
Probab=92.26 E-value=0.65 Score=43.51 Aligned_cols=33 Identities=36% Similarity=0.574 Sum_probs=27.2
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+.+++|+|.|+ |+||.++++.|+..|.. +.+++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 45788999984 89999999999999974 66654
No 219
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.24 E-value=0.79 Score=46.68 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=54.7
Q ss_pred HHHHHHHhCC----cEEEECC-cHHHHHHHHHHHHhCCCc------EEEEeCCccCcccCccccCCCCCCCCchHHHHHH
Q 015243 4 ERQLEAIKGA----KVLMVGA-GGIGCELLKTLALSGFQD------IHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVAR 72 (410)
Q Consensus 4 ~e~q~~L~~~----~VlvvG~-GgiG~ev~knLa~~Gv~~------i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~ 72 (410)
.|.++.++++ ||.|+|+ |.+|+.++-.|+..|+-. |+|+|. |+.+.|++..+
T Consensus 32 ~~~~~~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~~~~~a~g~a 94 (387)
T TIGR01757 32 NEDKSLTKSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ERSKEALEGVA 94 (387)
T ss_pred cchhHHHhcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------CccchhhhHHH
Confidence 3444445544 8999999 999999999999999843 666653 34445555555
Q ss_pred HHHHhhC-CCC-eEEEEccCCCCCcchHhhhccCcEEEEccCC
Q 015243 73 DAVLKFR-PQM-SITAHHANVKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 73 ~~l~~~n-p~v-~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
--|.... |.. ++....+ +.+-++++|+||.+...
T Consensus 95 ~DL~d~a~~~~~~v~i~~~-------~y~~~kdaDIVVitAG~ 130 (387)
T TIGR01757 95 MELEDSLYPLLREVSIGID-------PYEVFEDADWALLIGAK 130 (387)
T ss_pred HHHHHhhhhhcCceEEecC-------CHHHhCCCCEEEECCCC
Confidence 5555543 332 2221111 23557999999996543
No 220
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.23 E-value=0.84 Score=43.02 Aligned_cols=31 Identities=32% Similarity=0.453 Sum_probs=26.3
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR 33 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 57899986 9999999999999996 6777763
No 221
>PLN02253 xanthoxin dehydrogenase
Probab=92.22 E-value=0.56 Score=44.84 Aligned_cols=35 Identities=29% Similarity=0.560 Sum_probs=29.2
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++.+++++|.| .|+||.++++.|+..|. ++.++|.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~ 50 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL 50 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 46778899997 68999999999999996 4777763
No 222
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.21 E-value=0.85 Score=43.99 Aligned_cols=64 Identities=28% Similarity=0.521 Sum_probs=50.1
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
++.++++|-| .+|||-|+++.|++-|.. +.|+- | -+.|-+.+++.+++.. .++++.+.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLva---------------R----~~~kL~~la~~l~~~~-~v~v~vi~ 62 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVA---------------R----REDKLEALAKELEDKT-GVEVEVIP 62 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEe---------------C----cHHHHHHHHHHHHHhh-CceEEEEE
Confidence 4577899999 689999999999999976 66643 2 2457788889988877 77888887
Q ss_pred cCCCCC
Q 015243 89 ANVKDP 94 (410)
Q Consensus 89 ~~i~~~ 94 (410)
-++++.
T Consensus 63 ~DLs~~ 68 (265)
T COG0300 63 ADLSDP 68 (265)
T ss_pred CcCCCh
Confidence 777543
No 223
>PRK07478 short chain dehydrogenase; Provisional
Probab=92.21 E-value=0.73 Score=43.27 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=28.3
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r 38 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR 38 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678899998 58999999999999997 4777663
No 224
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.15 E-value=1.4 Score=42.76 Aligned_cols=90 Identities=13% Similarity=0.195 Sum_probs=53.8
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
.+|.|||+|.+|..+++.|...|. .++.++|.+. ..|.+. +....+.+.+.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~------------------~~~~~~----l~~~~~~~~~~---- 55 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSK------------------NEHFNQ----LYDKYPTVELA---- 55 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCc------------------HHHHHH----HHHHcCCeEEe----
Confidence 369999999999999999999983 4577765421 011111 12222222211
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHH--HCCCcEEE
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVE 133 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~--~~~~p~i~ 133 (410)
. ...+..+++|+||.|+-....+..+.++.. ..+..++.
T Consensus 56 ---~--~~~e~~~~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS 96 (277)
T PRK06928 56 ---D--NEAEIFTKCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVS 96 (277)
T ss_pred ---C--CHHHHHhhCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEE
Confidence 1 123456789999999876556666655532 23444554
No 225
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=92.15 E-value=0.73 Score=45.51 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=28.2
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+++|+|.| .|.+|+++++.|+..|.. ++++|.
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~-V~~~~r 38 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYE-VHGIIR 38 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCE-EEEEec
Confidence 4578899998 589999999999999974 666664
No 226
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.11 E-value=0.34 Score=51.41 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=30.4
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+.+++++|+|+||+|..+++.|+..|+ ++++++
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~n 409 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIAN 409 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEc
Confidence 567899999999999999999999999 899886
No 227
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.10 E-value=0.64 Score=43.35 Aligned_cols=33 Identities=33% Similarity=0.448 Sum_probs=28.5
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD 43 (410)
|++++|+|.|+ |+||..+++.|+..|. ++.+++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~ 36 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAG 36 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 57889999996 8999999999999997 477765
No 228
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=92.02 E-value=0.76 Score=46.06 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=56.9
Q ss_pred cEEEECCcHHHHHHHHHHHHhCC-------CcEEEEeCCccCcccCccccCCCCCCC-CchHHHHHHHHHHhh--C----
Q 015243 14 KVLMVGAGGIGCELLKTLALSGF-------QDIHIIDMDTIEVSNLNRQFLFRQSHV-GQSKAKVARDAVLKF--R---- 79 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv-------~~i~liD~D~Ve~sNL~Rq~lf~~~di-G~~Ka~~a~~~l~~~--n---- 79 (410)
+|.|+|+|+.|+.++..|+..|. .++++...+ +++ +.. ..+.+.+- |
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~---------------~~~~~~~----~~~~in~~~~n~~yl 61 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE---------------EEIEGRN----LTEIINTTHENVKYL 61 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec---------------cccCCHH----HHHHHHhcCCCcccc
Confidence 68999999999999999998882 356665431 111 111 12222221 1
Q ss_pred CCCeEEEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHH--HCCCcEEEe
Q 015243 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCL--AADVPLVES 134 (410)
Q Consensus 80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~--~~~~p~i~~ 134 (410)
|+++ ...++.-.....+.++++|+|+.++.+...|..+.++.. +.+.+++.+
T Consensus 62 pgi~---Lp~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~ 115 (342)
T TIGR03376 62 PGIK---LPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISC 115 (342)
T ss_pred CCCc---CCCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEE
Confidence 2211 111111001123567899999999988777777766643 234566654
No 229
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=92.01 E-value=0.2 Score=51.58 Aligned_cols=35 Identities=37% Similarity=0.619 Sum_probs=32.4
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+.+|+|+|+|++|..+++.|...|+.+++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 67899999999999999999999999999999864
No 230
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.99 E-value=0.66 Score=45.37 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=29.2
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
...+|+|+|+|++|...+..+..+|...+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 4668999999999999998888899988877763
No 231
>PRK07814 short chain dehydrogenase; Provisional
Probab=91.99 E-value=0.84 Score=43.26 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=29.5
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+.+++++|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~ 43 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART 43 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899998 56899999999999998 68887743
No 232
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=91.93 E-value=0.48 Score=47.11 Aligned_cols=31 Identities=35% Similarity=0.602 Sum_probs=27.6
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCC-C-----cEEEEe
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGF-Q-----DIHIID 43 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv-~-----~i~liD 43 (410)
.||.|||+ |.+|+.++-.|+..|+ + +|.|+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D 41 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLD 41 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEe
Confidence 47999998 9999999999999987 4 688887
No 233
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=91.87 E-value=0.22 Score=48.64 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=31.4
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 4678999999999999999999999997 7888774
No 234
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.84 E-value=0.41 Score=47.26 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=29.4
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCC-CcEEEEeCC
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD~D 45 (410)
.||.|||+ |.+|+.++-.|+..|+ .+|.|+|-.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 37999999 9999999999999897 579999954
No 235
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=91.82 E-value=0.68 Score=45.34 Aligned_cols=31 Identities=32% Similarity=0.668 Sum_probs=28.1
Q ss_pred EEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 15 VLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 15 VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
|.|||+|.+|+.++-.|+..|..+++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 5799999999999999999886699999976
No 236
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.81 E-value=1 Score=46.52 Aligned_cols=35 Identities=26% Similarity=0.555 Sum_probs=30.5
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+.+++|+|+|.|+.|..+++.|+..|. ++++.|.+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 457899999999999999999999996 48888854
No 237
>PRK12939 short chain dehydrogenase; Provisional
Probab=91.81 E-value=0.96 Score=42.04 Aligned_cols=33 Identities=30% Similarity=0.589 Sum_probs=27.5
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+.+++++|.| .|++|.++++.|+..|.. +.+++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence 5678999998 489999999999999974 66654
No 238
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.80 E-value=0.83 Score=49.79 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=30.7
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
..++|+|||+|..|-..|..|++.|.. ++|+|.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 467999999999999999999999986 9999864
No 239
>PRK06940 short chain dehydrogenase; Provisional
Probab=91.78 E-value=0.8 Score=43.95 Aligned_cols=31 Identities=29% Similarity=0.608 Sum_probs=25.6
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++.++|.|+||||.++++.|+ .|. ++.++|.
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r 32 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY 32 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence 567888899999999999996 674 6777764
No 240
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.78 E-value=0.79 Score=42.75 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=27.9
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
|++++++|.| .|++|..+++.|+..|. ++.+++
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~ 36 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVAD 36 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEec
Confidence 5678999998 58999999999999985 477765
No 241
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=91.77 E-value=0.99 Score=43.04 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=29.5
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+++++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r 42 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDR 42 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 46778899998 58999999999999998 5777764
No 242
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.73 E-value=1.1 Score=45.93 Aligned_cols=41 Identities=32% Similarity=0.506 Sum_probs=33.6
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccc
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQ 55 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq 55 (410)
+|.|||+|-+|..++..|+..|. +++++|.+.-....|+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g 42 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKG 42 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcC
Confidence 79999999999999999999997 488999776554555543
No 243
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.71 E-value=0.47 Score=46.25 Aligned_cols=77 Identities=14% Similarity=0.316 Sum_probs=54.6
Q ss_pred HHhCCcEEEECCcH-HHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVGAGG-IGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG~Gg-iG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
.|++++|+|||.|. +|..+++.|...|. .+++++..+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t----------------------------------------- 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS----------------------------------------- 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc-----------------------------------------
Confidence 47899999999998 99999999998885 577776321
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~ 137 (410)
. ...+..+++|+||.|+.... .+..--.+.+.-+||.|+.
T Consensus 193 -~------~l~~~~~~ADIVIsAvg~p~---~i~~~~vk~gavVIDvGi~ 232 (286)
T PRK14175 193 -K------DMASYLKDADVIVSAVGKPG---LVTKDVVKEGAVIIDVGNT 232 (286)
T ss_pred -h------hHHHHHhhCCEEEECCCCCc---ccCHHHcCCCcEEEEcCCC
Confidence 0 01356789999999987543 2222224556677888764
No 244
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.70 E-value=1.1 Score=45.05 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=28.0
Q ss_pred hCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 11 ~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+++|+|.|+ |-||+.+++.|...|. +++.+|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 4688999986 9999999999999885 5777774
No 245
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.70 E-value=0.45 Score=46.56 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=27.2
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+|.+||+|.+|..++++|+..|.. +++.|.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~-v~v~dr~ 32 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHE-VVGYDVN 32 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCE-EEEEECC
Confidence 699999999999999999999964 7777754
No 246
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.68 E-value=0.39 Score=53.04 Aligned_cols=163 Identities=12% Similarity=0.106 Sum_probs=84.9
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCc---cccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLN---RQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~---Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
++|.|||+|-+|+.++..++..|+. ++|+|.+.=...... +..+=..-.-|+...+...+.+.+ |+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~-V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~------i~~~-- 406 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLK-TVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSN------LTPT-- 406 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCc-EEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhC------eEEe--
Confidence 5799999999999999999999976 888886542211100 000000000111111111111111 1111
Q ss_pred CCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHHCCC--cEEEecccCccc-eEEEEeCCCCccccccCCCCCCCC
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLAADV--PLVESGTTGFLG-QVTVHVKGKTECYECQPKPAPKTY 165 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~~~~--p~i~~g~~G~~G-~v~~~~~~~t~c~~C~~~~~~~~~ 165 (410)
..+ +-++++|+||.|+ .+.+.+..+-+.....-. -++.+.|.+..- .+........-+..-++-.++..-
T Consensus 407 ----~~~--~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m 480 (737)
T TIGR02441 407 ----LDY--SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKM 480 (737)
T ss_pred ----CCH--HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccC
Confidence 111 2368999999985 667777666555544433 244444443221 000001111112222333344556
Q ss_pred CceeeccCCCcchHHHHHHHHHHHHH
Q 015243 166 PVCTITSTPSKFVHCIVWAKDLLFAK 191 (410)
Q Consensus 166 p~cti~~~p~~~~h~i~~a~~~~f~~ 191 (410)
|...+...+.+....+..+.+ +...
T Consensus 481 ~LvEvv~g~~Ts~~~~~~~~~-~~~~ 505 (737)
T TIGR02441 481 QLLEIITHDGTSKDTLASAVA-VGLK 505 (737)
T ss_pred ceEEEeCCCCCCHHHHHHHHH-HHHH
Confidence 778888878888888888887 3443
No 247
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=91.66 E-value=0.72 Score=45.26 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.0
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+++++|.| .||||.++++.|+..|. ++.+++.
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r 38 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR 38 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence 3567899998 68999999999999994 5777764
No 248
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=91.62 E-value=0.61 Score=46.39 Aligned_cols=92 Identities=18% Similarity=0.189 Sum_probs=57.1
Q ss_pred HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
..+.+++|.++|.|+||.++++.|-..| ..|.- . ...-..++ .+.+ .+..
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y-~----------------~r~~~~~~--~~~~----~~~~------ 207 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY-H----------------SRTQLPPE--EAYE----YYAE------ 207 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee-e----------------cccCCchh--hHHH----hccc------
Confidence 4678999999999999999999999865 32322 1 11111111 1111 1111
Q ss_pred ccCCCCCcchHhhhccCcEEEE-ccCChHHHHHHHHHHHHC---CCcEEEec
Q 015243 88 HANVKDPKFNVEFFKQFNVVLN-GLDNLDARRHVNRLCLAA---DVPLVESG 135 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~-a~Dn~~~r~~i~~~c~~~---~~p~i~~g 135 (410)
. ...++++.++|+|+. +-.+.+++..+|+..... +.-+++.+
T Consensus 208 --~----~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~a 253 (336)
T KOG0069|consen 208 --F----VDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTA 253 (336)
T ss_pred --c----cCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecc
Confidence 1 123578899998766 557888999998865543 33455544
No 249
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.60 E-value=0.95 Score=42.01 Aligned_cols=36 Identities=25% Similarity=0.537 Sum_probs=30.1
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+.+++++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~ 40 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART 40 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35678899998 67999999999999998 68888744
No 250
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=91.59 E-value=0.5 Score=53.33 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=34.7
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCccc
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSN 51 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sN 51 (410)
..+||+|||+|.-|-++|..|++.|.. ++++|...++.-+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccccccccc
Confidence 578999999999999999999999976 9999987665444
No 251
>PRK06172 short chain dehydrogenase; Provisional
Probab=91.54 E-value=0.74 Score=43.15 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=28.6
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
|.+++++|.| .|++|.++++.|+..|. ++.+++.
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r 39 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADR 39 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 5678999998 58999999999999996 4777663
No 252
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.53 E-value=1.1 Score=44.85 Aligned_cols=102 Identities=19% Similarity=0.209 Sum_probs=55.4
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
..+|.|+|+|++|+.++..|+..| ++++...+.-....+++.-. .....+.. .++.+. +..
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l~~~---------~~l~~~--i~~----- 67 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYLGND---------VVLSDT--LRA----- 67 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccCCCC---------cccCCC--eEE-----
Confidence 368999999999999999999998 45555433221111211100 00011100 001111 111
Q ss_pred CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHC--CCcEEEe
Q 015243 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAA--DVPLVES 134 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~--~~p~i~~ 134 (410)
+. + ..+-+.++|+||.++-....+..+.++.... +.+++..
T Consensus 68 t~-d-~~~a~~~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl 110 (341)
T PRK12439 68 TT-D-FAEAANCADVVVMGVPSHGFRGVLTELAKELRPWVPVVSL 110 (341)
T ss_pred EC-C-HHHHHhcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 11 1 1234678999999998877777777765432 3345543
No 253
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.52 E-value=0.91 Score=42.57 Aligned_cols=34 Identities=35% Similarity=0.614 Sum_probs=28.8
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+++++++|.|+ |++|..+++.|+..|.. +.+++.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~-v~~~~r 39 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAA-VAIADL 39 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeC
Confidence 56788999985 99999999999999974 777664
No 254
>PRK12829 short chain dehydrogenase; Provisional
Probab=91.52 E-value=0.59 Score=43.95 Aligned_cols=36 Identities=36% Similarity=0.722 Sum_probs=31.0
Q ss_pred HHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 7 q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
...+++++++|.| .|++|..+++.|+..|.. +.+++
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~ 42 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCD 42 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEe
Confidence 3457889999998 599999999999999985 78877
No 255
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=91.52 E-value=0.66 Score=47.06 Aligned_cols=32 Identities=41% Similarity=0.746 Sum_probs=28.3
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+|+||| .|.+|..+++.|...|.. ++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~-V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQ-VRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCe-EEEeCCC
Confidence 6899998 999999999999999954 8888853
No 256
>PRK05876 short chain dehydrogenase; Provisional
Probab=91.50 E-value=0.8 Score=43.97 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=28.8
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+++++|.| .||||.++++.|+..|.. +.++|.
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~-Vv~~~r 38 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGAR-VVLGDV 38 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 6678899997 789999999999999974 777763
No 257
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.49 E-value=0.86 Score=47.92 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=30.6
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+++++|+|+|.|+.|..+++.|...|. +++..|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 467899999999999999999999997 58888843
No 258
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=91.39 E-value=1.8 Score=40.85 Aligned_cols=37 Identities=30% Similarity=0.550 Sum_probs=29.5
Q ss_pred HHHHHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEE
Q 015243 4 ERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHI 41 (410)
Q Consensus 4 ~e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~l 41 (410)
+|.-+....++|+|+|+ |++|..+++.|+..|.. ++.
T Consensus 9 ~~~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~ 46 (251)
T PLN00141 9 EEDAENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKA 46 (251)
T ss_pred ccccccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEE
Confidence 44455677889999995 99999999999998864 444
No 259
>PLN02852 ferredoxin-NADP+ reductase
Probab=91.38 E-value=1.1 Score=47.07 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=54.1
Q ss_pred hCCcEEEECCcHHHHHHHHHHHH--hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHH--HHHHHHHhhCCCCeEEE
Q 015243 11 KGAKVLMVGAGGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK--VARDAVLKFRPQMSITA 86 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~--~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~--~a~~~l~~~np~v~i~~ 86 (410)
..++|+|||+|.-|.+.|..|++ .|. +++|+|.... +--+.|.-. .. +--..|.. -..+.+.. +.+++..
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~-pgGlvr~gv-aP-~~~~~k~v~~~~~~~~~~--~~v~~~~ 98 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPT-PFGLVRSGV-AP-DHPETKNVTNQFSRVATD--DRVSFFG 98 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCC-CcceEeecc-CC-CcchhHHHHHHHHHHHHH--CCeEEEc
Confidence 35789999999999999999997 454 6999996652 334544321 11 21222321 11112222 3343221
Q ss_pred EccCCCCCcchHhhhccCcEEEEccCCh
Q 015243 87 HHANVKDPKFNVEFFKQFNVVLNGLDNL 114 (410)
Q Consensus 87 ~~~~i~~~~~~~~~~~~~DvVi~a~Dn~ 114 (410)
.-.+......+++...||.||.|+...
T Consensus 99 -nv~vg~dvtl~~L~~~yDaVIlAtGa~ 125 (491)
T PLN02852 99 -NVTLGRDVSLSELRDLYHVVVLAYGAE 125 (491)
T ss_pred -CEEECccccHHHHhhhCCEEEEecCCC
Confidence 111111212235557899999987653
No 260
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.33 E-value=1.6 Score=45.30 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=30.4
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
...+|+|||+|..|.+.+..|++.|. +++|+|..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 45789999999999999999999997 59999864
No 261
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=91.32 E-value=1.8 Score=47.17 Aligned_cols=108 Identities=18% Similarity=0.287 Sum_probs=62.0
Q ss_pred HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA 86 (410)
Q Consensus 8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 86 (410)
..-++++|+|.| +|-+|+.+++.|...|=-+++.+|...-. .. ..+ . ++ +++.
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~---~~-------------------~~~-~-~~--~~~~ 364 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDA---IS-------------------RFL-G-HP--RFHF 364 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchh---hh-------------------hhc-C-CC--ceEE
Confidence 345678899998 69999999999998642357777643210 00 000 0 11 2334
Q ss_pred EccCCCCCc-chHhhhccCcEEEEccC-----------------ChHHHHHHHHHHHHCCCcEEEecccCccc
Q 015243 87 HHANVKDPK-FNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADVPLVESGTTGFLG 141 (410)
Q Consensus 87 ~~~~i~~~~-~~~~~~~~~DvVi~a~D-----------------n~~~r~~i~~~c~~~~~p~i~~g~~G~~G 141 (410)
+..++++.. .....++++|+||.+.. |...-..+-+.|.++++.+|..++...+|
T Consensus 365 ~~gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg 437 (660)
T PRK08125 365 VEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYG 437 (660)
T ss_pred EeccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcC
Confidence 445554321 11234566777775321 12223445567788888888887765555
No 262
>PLN02214 cinnamoyl-CoA reductase
Probab=91.29 E-value=2.4 Score=42.08 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=61.7
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
+++++|+|.|+ |.+|+.+++.|+..|.. ++.++.+. ++. +... .+.+.... -+++...
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~-V~~~~r~~---~~~--------------~~~~-~~~~~~~~--~~~~~~~ 66 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYT-VKGTVRNP---DDP--------------KNTH-LRELEGGK--ERLILCK 66 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCCc---hhh--------------hHHH-HHHhhCCC--CcEEEEe
Confidence 56789999996 99999999999999864 55554221 000 0010 11111111 1355555
Q ss_pred cCCCCCcchHhhhccCcEEEEccC----C--------hHHHHHHHHHHHHCCC-cEEEeccc
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLD----N--------LDARRHVNRLCLAADV-PLVESGTT 137 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~D----n--------~~~r~~i~~~c~~~~~-p~i~~g~~ 137 (410)
.++++...-...++++|+||.+.. + ...-..+-+.|.+.++ .+|..++.
T Consensus 67 ~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~ 128 (342)
T PLN02214 67 ADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSI 128 (342)
T ss_pred cCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 666544333456778899988642 1 1223445556777775 47766654
No 263
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.29 E-value=1.3 Score=43.34 Aligned_cols=97 Identities=13% Similarity=0.215 Sum_probs=58.2
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
++|+|.| .|-+|+.+++.|...|. +++.++.+. .++ ..+.. + .++....++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~----~~l~~--~--~v~~v~~Dl 52 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKA----SFLKE--W--GAELVYGDL 52 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHh----hhHhh--c--CCEEEECCC
Confidence 3799999 59999999999999986 466654321 011 11111 1 244455566
Q ss_pred CCCcchHhhhccCcEEEEccCC------------hHHHHHHHHHHHHCCC-cEEEeccc
Q 015243 92 KDPKFNVEFFKQFNVVLNGLDN------------LDARRHVNRLCLAADV-PLVESGTT 137 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~Dn------------~~~r~~i~~~c~~~~~-p~i~~g~~ 137 (410)
++...-...++++|+||.+... ...-..+-+.|...++ .+|..++.
T Consensus 53 ~d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~ 111 (317)
T CHL00194 53 SLPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL 111 (317)
T ss_pred CCHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 5443334567888999886431 1122345567777776 56665554
No 264
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=91.28 E-value=1.1 Score=45.14 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=34.6
Q ss_pred HHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCc--EEEEeCCccC
Q 015243 5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQD--IHIIDMDTIE 48 (410)
Q Consensus 5 e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~--i~liD~D~Ve 48 (410)
+.|+--.+.+|.|||+||-||.++..|.+.|+.. +..+|.|.-.
T Consensus 10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~ 55 (349)
T TIGR00065 10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQH 55 (349)
T ss_pred hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHH
Confidence 3444445689999999999999999999999864 4557887633
No 265
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=91.27 E-value=2.3 Score=41.76 Aligned_cols=30 Identities=33% Similarity=0.556 Sum_probs=25.2
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
++|+|.| .|.+|..+++.|+..|.. ++++|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~-V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHD-VVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCe-EEEEe
Confidence 3799999 599999999999999864 66665
No 266
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.23 E-value=1 Score=44.53 Aligned_cols=34 Identities=29% Similarity=0.622 Sum_probs=30.1
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
...+|+|.|+|++|...+..+..+|..++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 4679999999999999999888999988888773
No 267
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.21 E-value=0.92 Score=41.92 Aligned_cols=33 Identities=30% Similarity=0.646 Sum_probs=27.5
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+.+.+|+|.| .|++|..+++.|+..|.. +.+++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~ 37 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITA 37 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEee
Confidence 4467899998 589999999999998875 77765
No 268
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=91.17 E-value=1.5 Score=44.56 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=26.7
Q ss_pred hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
..++|+|.| .|.+|..+++.|...|.. +++++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~-V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYN-VVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEEe
Confidence 356899998 599999999999999864 666653
No 269
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=91.13 E-value=1.1 Score=43.61 Aligned_cols=31 Identities=29% Similarity=0.582 Sum_probs=26.5
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 58999999999999999999996 47777643
No 270
>PRK07024 short chain dehydrogenase; Provisional
Probab=91.13 E-value=0.85 Score=43.01 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=27.8
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~ 35 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR 35 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 46788887 78999999999999997 68887743
No 271
>PLN02650 dihydroflavonol-4-reductase
Probab=91.13 E-value=2.8 Score=41.59 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=26.7
Q ss_pred hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+++|+|.| .|.||+.+++.|+..|.. +++++.
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~-V~~~~r 37 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYT-VRATVR 37 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCE-EEEEEc
Confidence 357899998 599999999999999874 655553
No 272
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=91.13 E-value=1.5 Score=43.30 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.6
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++|+|.| +|.||+.+++.|...|. +++++|.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r 32 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIR 32 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEec
Confidence 4789998 58899999999999997 4676664
No 273
>PRK13018 cell division protein FtsZ; Provisional
Probab=91.07 E-value=1.4 Score=44.62 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=32.7
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTI 47 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~V 47 (410)
..+.+|.|||+||-||.++.+|...|+. .+..+|.|.-
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q 65 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQ 65 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHH
Confidence 3568999999999999999999999976 5677888873
No 274
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=91.00 E-value=1.1 Score=44.99 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=57.3
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCcEE-EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGFQDIH-IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~-liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
.||+|+|+ |.+|.++++.|...-.-++. +++.+. ..|+. +.+..|.+.... ...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~ 56 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLN 56 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Cce
Confidence 47999998 99999999999965333344 545331 12221 111123221100 001
Q ss_pred CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~ 136 (410)
+.+.. ..++.+++|+|+.|+.+..++.++..+ ...++.+|+.+.
T Consensus 57 ~~~~~-~~~~~~~~DvVf~alP~~~s~~~~~~~-~~~G~~VIDlS~ 100 (346)
T TIGR01850 57 LEPID-EEEIAEDADVVFLALPHGVSAELAPEL-LAAGVKVIDLSA 100 (346)
T ss_pred eecCC-HHHhhcCCCEEEECCCchHHHHHHHHH-HhCCCEEEeCCh
Confidence 11111 134446899999999987777666655 457899998654
No 275
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=90.97 E-value=1.7 Score=44.93 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=60.0
Q ss_pred hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+.+||+|.| .|-||+.+++.|...|. +++.+|.+... ++ .+. . .+. -++ .++....
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~-----~~----------~~~---~-~~~-~~~--~~~~~~~ 175 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTG-----RK----------ENL---V-HLF-GNP--RFELIRH 175 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCc-----cH----------hHh---h-hhc-cCC--ceEEEEC
Confidence 346899998 69999999999999986 47777743211 00 000 0 000 012 2333333
Q ss_pred CCCCCcchHhhhccCcEEEEccC-----------------ChHHHHHHHHHHHHCCCcEEEecccCccc
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLD-----------------NLDARRHVNRLCLAADVPLVESGTTGFLG 141 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~D-----------------n~~~r~~i~~~c~~~~~p~i~~g~~G~~G 141 (410)
++.+ ..+.++|+||.+.. |...-..+-+.|.++++.+|..++.+.+|
T Consensus 176 Di~~-----~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg 239 (436)
T PLN02166 176 DVVE-----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYG 239 (436)
T ss_pred cccc-----ccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhC
Confidence 3322 22457898888531 11112345567888888899888776555
No 276
>PRK06949 short chain dehydrogenase; Provisional
Probab=90.97 E-value=1.3 Score=41.52 Aligned_cols=34 Identities=24% Similarity=0.531 Sum_probs=28.7
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+++|+|.| .|++|..+++.|+..|. ++++++.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r 41 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR 41 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678999998 59999999999999997 4777653
No 277
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.92 E-value=1 Score=43.22 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=27.4
Q ss_pred EEEECC-cHHHHHHHHHHHHhC--C-CcEEEEeCCc
Q 015243 15 VLMVGA-GGIGCELLKTLALSG--F-QDIHIIDMDT 46 (410)
Q Consensus 15 VlvvG~-GgiG~ev~knLa~~G--v-~~i~liD~D~ 46 (410)
|.|||+ |.+|..++..|+..| . .++.|+|.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence 579999 999999999999998 4 5899998443
No 278
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=90.90 E-value=0.33 Score=50.05 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=30.0
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
..+|+|||+|-+||++|-.|++.|+. ++|+|+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~rp 35 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEMRP 35 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEccC
Confidence 46899999999999999999999976 89998543
No 279
>PRK07035 short chain dehydrogenase; Provisional
Probab=90.89 E-value=1.5 Score=41.09 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=30.4
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.|.+++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~ 41 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK 41 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36778899998 78999999999999997 68887743
No 280
>PLN02572 UDP-sulfoquinovose synthase
Probab=90.88 E-value=2.8 Score=43.39 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=30.3
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+++++|+|.| +|.||+.+++.|+..|. +++++|.
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 56788999998 69999999999999996 5888884
No 281
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.86 E-value=3.2 Score=34.10 Aligned_cols=86 Identities=20% Similarity=0.334 Sum_probs=53.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCC-c-EEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQ-D-IHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~-~-i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
||.|||+|.+|...+..+...+-+ + ..++|.+ ..+++.+++ +. ++. .+. +
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~-------------------~~~~~~~~~---~~--~~~--~~~-~- 53 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD-------------------PERAEAFAE---KY--GIP--VYT-D- 53 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS-------------------HHHHHHHHH---HT--TSE--EES-S-
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC-------------------HHHHHHHHH---Hh--ccc--chh-H-
Confidence 799999999999999999988422 2 2344432 223333322 22 222 221 1
Q ss_pred CCCcchHhhhc--cCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243 92 KDPKFNVEFFK--QFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (410)
Q Consensus 92 ~~~~~~~~~~~--~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~ 133 (410)
.+++++ +.|+|+.++.+ .....+-..|.+.|++++-
T Consensus 54 -----~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 54 -----LEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp -----HHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEE
T ss_pred -----HHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEE
Confidence 234444 78999999865 5566677778888886553
No 282
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.83 E-value=1.5 Score=44.17 Aligned_cols=32 Identities=41% Similarity=0.583 Sum_probs=27.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+|.|||+|.+|..+++.|...|. .+.++|.|
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~ 32 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD 32 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 479999999999999999999997 46677643
No 283
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=90.76 E-value=1.4 Score=43.71 Aligned_cols=95 Identities=17% Similarity=0.293 Sum_probs=61.9
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHH-HHHHHHHhhCCCCeEEEEccC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAK-VARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~-~a~~~l~~~np~v~i~~~~~~ 90 (410)
..+|.|+|+||+|-....-....|.++|.-+|...- .-.+.++| ...|.=.+|-. -+.+.+.++.+
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~-Kl~~A~~f--GAT~~vn~~~~~~vv~~i~~~T~---------- 252 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE-KLELAKKF--GATHFVNPKEVDDVVEAIVELTD---------- 252 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH-HHHHHHhc--CCceeecchhhhhHHHHHHHhcC----------
Confidence 568999999999999999999999999999985431 22233332 22222222211 13333333321
Q ss_pred CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCc
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVP 130 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p 130 (410)
...|.+|+++.|.+....--+.|++.+.-
T Consensus 253 -----------gG~d~~~e~~G~~~~~~~al~~~~~~G~~ 281 (366)
T COG1062 253 -----------GGADYAFECVGNVEVMRQALEATHRGGTS 281 (366)
T ss_pred -----------CCCCEEEEccCCHHHHHHHHHHHhcCCeE
Confidence 17899999999998776666677665543
No 284
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.74 E-value=1.4 Score=41.14 Aligned_cols=33 Identities=42% Similarity=0.640 Sum_probs=27.7
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+++++|+|.| .|++|.++++.|+..|. ++.++|
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~ 35 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIAD 35 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe
Confidence 4568899998 69999999999999987 466665
No 285
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=90.74 E-value=2.9 Score=41.52 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=26.5
Q ss_pred hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
++++|+|.| +|.||+.+++.|+..|.. +.+++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~-V~~~~ 41 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYT-VHATL 41 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEe
Confidence 467999998 689999999999999864 55554
No 286
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=90.71 E-value=1.8 Score=40.73 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=32.8
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.|+.+||+|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus 28 ~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 28 GLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4789999999999999999999999998866688754
No 287
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=90.70 E-value=1.6 Score=40.95 Aligned_cols=30 Identities=40% Similarity=0.615 Sum_probs=21.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhC---CCcEEEEe
Q 015243 13 AKVLMVGAGGIGCELLKTLALSG---FQDIHIID 43 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~G---v~~i~liD 43 (410)
.+|.+||||+||..+++.+- -| +.-+.+.|
T Consensus 1 l~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~D 33 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVR-DGRVDFELVAVYD 33 (255)
T ss_pred CeEEEEeccHHHHHHHHHHh-cCCcceeEEEEec
Confidence 36899999999999887654 44 44444444
No 288
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=90.56 E-value=1.6 Score=45.17 Aligned_cols=109 Identities=18% Similarity=0.220 Sum_probs=74.7
Q ss_pred CcEEEECCcHH-HHHHHHHHHH----hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 13 AKVLMVGAGGI-GCELLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 13 ~~VlvvG~Ggi-G~ev~knLa~----~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
.||.|||+|+. +-++++.|+. ..+++|.|+|-|. ..|.+ =...+++.+++..++++++..
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~Rl~~------------v~~l~~~~~~~~g~~~~v~~t 65 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE---ERLDI------------ILTIAKRYVEEVGADIKFEKT 65 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEe
Confidence 37999999985 4467777774 4568999999553 22211 123455556677788888877
Q ss_pred ccCCCCCcchHhhhccCcEEEEc--cCChHHHHHHHHHHHHCCCcEEEecccCccceEEE
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNG--LDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTV 145 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a--~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~ 145 (410)
.+. .+-++++|+||++ ....++|..--+...++|+-= ..|.|.+|...-
T Consensus 66 tD~-------~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~g--qeT~G~GG~~~a 116 (425)
T cd05197 66 MDL-------EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIG--QETVGPGGTFSG 116 (425)
T ss_pred CCH-------HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCccc--ccccCcchhhhh
Confidence 543 3557899999997 466788887778889988743 567777775443
No 289
>PRK05872 short chain dehydrogenase; Provisional
Probab=90.54 E-value=1.4 Score=42.77 Aligned_cols=35 Identities=34% Similarity=0.680 Sum_probs=29.5
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+.+++|+|.| .||||.++++.|+..|. ++.+++.
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 41 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDL 41 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 36678999998 58999999999999997 5777764
No 290
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.52 E-value=1.5 Score=42.75 Aligned_cols=88 Identities=23% Similarity=0.330 Sum_probs=60.9
Q ss_pred CHHHHHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 3 SERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 3 g~e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
+....+++.++-|+|-|| .|||-++|+.|+..|.+-+.++= + ..+-+.+++.+++.-|.
T Consensus 3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar---------------~-----~rrl~~v~~~l~~~~~~ 62 (282)
T KOG1205|consen 3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVAR---------------R-----ARRLERVAEELRKLGSL 62 (282)
T ss_pred ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeeh---------------h-----hhhHHHHHHHHHHhCCc
Confidence 455678999999999995 69999999999999988554431 1 12345555666665544
Q ss_pred CeEEEEccCCCCCcchHh-------hhccCcEEEEc
Q 015243 82 MSITAHHANVKDPKFNVE-------FFKQFNVVLNG 110 (410)
Q Consensus 82 v~i~~~~~~i~~~~~~~~-------~~~~~DvVi~a 110 (410)
-++.....++++...... -+.+.|+.|+.
T Consensus 63 ~~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNN 98 (282)
T KOG1205|consen 63 EKVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNN 98 (282)
T ss_pred CccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence 367788888865543333 35677888873
No 291
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=90.52 E-value=1.2 Score=43.44 Aligned_cols=32 Identities=22% Similarity=0.578 Sum_probs=27.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+|.+||+|.+|..++.+|+..|. .+++.|.+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~ 33 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVN 33 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 379999999999999999999996 57887743
No 292
>PRK12744 short chain dehydrogenase; Provisional
Probab=90.49 E-value=1.4 Score=41.47 Aligned_cols=33 Identities=33% Similarity=0.566 Sum_probs=27.1
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEE
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHI 41 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~l 41 (410)
.|++++++|.| .|+||.++++.|+..|...+.+
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 35678999997 7899999999999999864433
No 293
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=90.49 E-value=0.89 Score=46.27 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=60.9
Q ss_pred hCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 11 ~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+.+||+|+|+ |.+|.|+++.|......+++.+-. ....|+. +...+|.+.-... .
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s---------------~~saG~~--------i~~~~~~l~~~~~-~ 92 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTA---------------DRKAGQS--------FGSVFPHLITQDL-P 92 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEC---------------hhhcCCC--------chhhCccccCccc-c
Confidence 4569999996 899999999999886566777532 2223322 1112222111000 0
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~ 137 (410)
.+. .....-++++|+|+.|+.+..++.++..+ ..+.++|+.+..
T Consensus 93 ~~~--~~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDlSs~ 136 (381)
T PLN02968 93 NLV--AVKDADFSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDLSAD 136 (381)
T ss_pred cee--cCCHHHhcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEcCch
Confidence 011 11122248899999999988888888775 467889987654
No 294
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.46 E-value=1.6 Score=45.60 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=30.2
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+.+|+|||+|..|.+.+..|++.|.. ++++|..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~ 173 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH 173 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence 457899999999999999999999986 8888754
No 295
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=90.37 E-value=0.37 Score=47.42 Aligned_cols=34 Identities=29% Similarity=0.502 Sum_probs=29.1
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
+.+|+|+|+|++|+.++..|+..|. .+++++.+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 4689999999999999999999994 578876543
No 296
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=90.33 E-value=1.9 Score=41.74 Aligned_cols=90 Identities=17% Similarity=0.132 Sum_probs=52.0
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHh--CCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALS--GFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~--Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
...||.|||+|.+|..++++|... |+.-..+.|.+ ..|++.+++ +.+ ....
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~-------------------~~~a~~~a~---~~g-~~~~---- 57 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD-------------------PQRHADFIW---GLR-RPPP---- 57 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC-------------------HHHHHHHHH---hcC-CCcc----
Confidence 457899999999999999999864 33222233421 123332222 221 0000
Q ss_pred cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE 133 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~ 133 (410)
.+ . .++++.+.|+|+.|+.+... ..+...+.+.+++++.
T Consensus 58 --~~--~-~eell~~~D~Vvi~tp~~~h-~e~~~~aL~aGk~Vi~ 96 (271)
T PRK13302 58 --VV--P-LDQLATHADIVVEAAPASVL-RAIVEPVLAAGKKAIV 96 (271)
T ss_pred --cC--C-HHHHhcCCCEEEECCCcHHH-HHHHHHHHHcCCcEEE
Confidence 11 1 23456778999998865443 3444566677887774
No 297
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.32 E-value=1.5 Score=43.56 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=28.7
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+.+|+|.|+|++|...+..+..+|. +++++|.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 57899999999999999998888998 5777774
No 298
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.31 E-value=1.5 Score=41.22 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=30.4
Q ss_pred HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.++.+++++|.| .|+||..+++.|+..|. ++.++|.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r 44 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR 44 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence 356789999998 69999999999999997 5777763
No 299
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.26 E-value=1.6 Score=44.93 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=30.5
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+++++|+|+|.|++|..+++.|+..|.. +++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~-V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGAN-VTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCE-EEEEcCC
Confidence 5678999999999999999999999974 8887744
No 300
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.22 E-value=0.79 Score=43.44 Aligned_cols=36 Identities=25% Similarity=0.536 Sum_probs=30.4
Q ss_pred HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+++++++|.|+ |+||.++++.|+..|. ++.++|.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID 39 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 367789999985 9999999999999997 68887744
No 301
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.21 E-value=0.94 Score=48.45 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=30.5
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+.+|+|||+|.+|-..+..|++.|.. ++++|..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~-V~v~e~~ 169 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHA-VTIFEAG 169 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 467999999999999999999999985 9999854
No 302
>PRK05855 short chain dehydrogenase; Validated
Probab=90.20 E-value=0.83 Score=48.22 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=30.4
Q ss_pred HHHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 7 LEAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 7 q~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+..+++.+++|+| .||||.++++.|+..|.. +.+++
T Consensus 310 ~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~ 346 (582)
T PRK05855 310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASD 346 (582)
T ss_pred cccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEe
Confidence 3456788999998 599999999999999986 77766
No 303
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.20 E-value=1.2 Score=41.40 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=24.5
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCc
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQD 38 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~ 38 (410)
|.+++++|.| .|++|.++++.|+..|...
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v 31 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDI 31 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEE
Confidence 4567899998 6899999999999998653
No 304
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=90.19 E-value=1.9 Score=42.39 Aligned_cols=38 Identities=21% Similarity=0.451 Sum_probs=31.2
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCccCccc
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSN 51 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sN 51 (410)
+|.|||+||-||.++..|.+.|+. .+..+|.|.-....
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~ 41 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAK 41 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhc
Confidence 689999999999999999999986 45677877744433
No 305
>PRK13243 glyoxylate reductase; Reviewed
Probab=90.18 E-value=0.36 Score=48.12 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=57.7
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.|.+++|.|||+|.+|.++++.|...|. ++..+|...- .... ... .+.
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~--------------------~~~~----~~~--~~~----- 194 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK--------------------PEAE----KEL--GAE----- 194 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC--------------------hhhH----HHc--CCE-----
Confidence 5889999999999999999999998887 4777764210 0000 011 111
Q ss_pred cCCCCCcchHhhhccCcEEEEccC-ChHHHHHHHHHHHH---CCCcEEEecc
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLA---ADVPLVESGT 136 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~---~~~p~i~~g~ 136 (410)
.. ...+.++++|+|+.++. +.+++..+++.... .+.-+|+.+.
T Consensus 195 --~~---~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aR 241 (333)
T PRK13243 195 --YR---PLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTAR 241 (333)
T ss_pred --ec---CHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcC
Confidence 00 12467889999999764 45567777654333 2334666653
No 306
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=90.15 E-value=0.28 Score=44.62 Aligned_cols=106 Identities=24% Similarity=0.270 Sum_probs=63.2
Q ss_pred cEEEECCcHHHHH-HHHHHHH----hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 14 KVLMVGAGGIGCE-LLKTLAL----SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 14 ~VlvvG~GgiG~e-v~knLa~----~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
||.+||+|+.-.. .+..+.. .+.++|.|+|-|. .-|.. =...+++.+++.+++++|+...
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~---~RL~~------------~~~~~~~~~~~~~~~~~v~~tt 65 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE---ERLEI------------VERLARRMVEEAGADLKVEATT 65 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH---HHHHH------------HHHHHHHHHHHCTTSSEEEEES
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH---HHHHH------------HHHHHHHHHHhcCCCeEEEEeC
Confidence 6899999987654 3333332 2345899988654 11110 0123555566788888888765
Q ss_pred cCCCCCcchHhhhccCcEEEEcc--CChHHHHHHHHHHHHCCCcEEEecccCccc
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGL--DNLDARRHVNRLCLAADVPLVESGTTGFLG 141 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~--Dn~~~r~~i~~~c~~~~~p~i~~g~~G~~G 141 (410)
+. .+-++++|+||++. ...++|..=.+...++|+.-....+.|.+|
T Consensus 66 d~-------~eAl~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG 113 (183)
T PF02056_consen 66 DR-------REALEGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGG 113 (183)
T ss_dssp SH-------HHHHTTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHH
T ss_pred CH-------HHHhCCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccH
Confidence 43 35678999999974 445666665666677776554455555544
No 307
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=90.14 E-value=1.1 Score=44.28 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=29.4
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCC-cEEEEeCC
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGFQ-DIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv~-~i~liD~D 45 (410)
++|.|+|+ |.+|..++..|+..|.. +++++|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence 47999998 99999999999999974 79999963
No 308
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.13 E-value=1.5 Score=42.75 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=51.5
Q ss_pred HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEE
Q 015243 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITA 86 (410)
Q Consensus 8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~ 86 (410)
..|.+++++|.| .||||.++++.|+..|.. +.++|... ..+.+.+++.++... .++..
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~-Vv~~~~~~------------------~~~~~~~~~~i~~~g--~~~~~ 66 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGAT-VVVNDVAS------------------ALDASDVLDEIRAAG--AKAVA 66 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEecCCc------------------hhHHHHHHHHHHhcC--CeEEE
Confidence 457788999998 579999999999999974 66666321 123344445554432 35566
Q ss_pred EccCCCCCcchHhh------hccCcEEEEcc
Q 015243 87 HHANVKDPKFNVEF------FKQFNVVLNGL 111 (410)
Q Consensus 87 ~~~~i~~~~~~~~~------~~~~DvVi~a~ 111 (410)
+..++.+......+ +...|+||++.
T Consensus 67 ~~~Dv~d~~~~~~~~~~~~~~g~iD~li~nA 97 (306)
T PRK07792 67 VAGDISQRATADELVATAVGLGGLDIVVNNA 97 (306)
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 66666443211122 34678888753
No 309
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=90.12 E-value=1.4 Score=43.99 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=58.9
Q ss_pred hCCcEEEECC-cHHHHHHHHHHHH--hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 11 KGAKVLMVGA-GGIGCELLKTLAL--SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 11 ~~~~VlvvG~-GgiG~ev~knLa~--~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
+..+|.|||+ |-+|.|+++.|.. .-+.++..+-.+ +..|+.=. +. .-++.++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~---------------~saG~~~~------~~--~~~~~v~-- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE---------------ESAGETLR------FG--GKSVTVQ-- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc---------------CcCCceEE------EC--CcceEEE--
Confidence 4678999996 8999999999998 566677766432 22333211 00 1123333
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
.++ ..-|+++|+|+.|+..-.++.+..++ ...+.++||.+
T Consensus 58 --~~~-----~~~~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VIDlS 97 (336)
T PRK08040 58 --DAA-----EFDWSQAQLAFFVAGREASAAYAEEA-TNAGCLVIDSS 97 (336)
T ss_pred --eCc-----hhhccCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 121 12247899999999877666666555 55789999854
No 310
>PRK06046 alanine dehydrogenase; Validated
Probab=90.11 E-value=2.2 Score=42.44 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=50.3
Q ss_pred hCCcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 11 KGAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
...++.|+|+|+.|...+..|. ..++..+.+.|.+ ..+++.+++.+++..+ +++....
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~~~~-~~v~~~~- 186 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT-------------------KSSAEKFVERMSSVVG-CDVTVAE- 186 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-
Confidence 3578999999999999999998 4577888887633 3455556666554322 3443322
Q ss_pred CCCCCcchHhhhccCcEEEEccCC
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
+ ..+.+. +|+|+.|+-+
T Consensus 187 ~------~~~~l~-aDiVv~aTps 203 (326)
T PRK06046 187 D------IEEACD-CDILVTTTPS 203 (326)
T ss_pred C------HHHHhh-CCEEEEecCC
Confidence 1 123445 9999999865
No 311
>PRK10537 voltage-gated potassium channel; Provisional
Probab=90.09 E-value=1.3 Score=45.18 Aligned_cols=88 Identities=11% Similarity=0.041 Sum_probs=56.8
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
++.+|+|+|.|.+|.++++.|...|. .++++|.|.++. . + ..+. ....++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~------~-~--------------------~~g~--~vI~GD 288 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEH------R-L--------------------PDDA--DLIPGD 288 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhh------h-c--------------------cCCC--cEEEeC
Confidence 36789999999999999999998886 588888763210 0 0 0011 123333
Q ss_pred CCCC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCC
Q 015243 91 VKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAAD 128 (410)
Q Consensus 91 i~~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~ 128 (410)
.++. .....-+++++.|+.+++|.+....+-..+++.+
T Consensus 289 ~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 289 SSDSAVLKKAGAARARAILALRDNDADNAFVVLAAKEMS 327 (393)
T ss_pred CCCHHHHHhcCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence 3321 1122235688999999888776666666677654
No 312
>PRK07774 short chain dehydrogenase; Provisional
Probab=90.03 E-value=1.8 Score=40.34 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=29.2
Q ss_pred HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+++++++|.|+ |++|..+++.|+..|. ++.++|.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r 38 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADI 38 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 356788999996 9999999999999996 4777663
No 313
>PRK07102 short chain dehydrogenase; Provisional
Probab=90.03 E-value=1.9 Score=40.18 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=26.7
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
++|+|.| .|+||.++++.|+..|. +++++|.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD 34 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence 5788888 69999999999999996 47777643
No 314
>PRK06125 short chain dehydrogenase; Provisional
Probab=90.02 E-value=1.6 Score=41.09 Aligned_cols=35 Identities=34% Similarity=0.697 Sum_probs=29.9
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+.+++++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~ 40 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD 40 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 56789999986 7999999999999998 68887743
No 315
>PRK09330 cell division protein FtsZ; Validated
Probab=90.01 E-value=1.8 Score=43.94 Aligned_cols=111 Identities=19% Similarity=0.219 Sum_probs=63.5
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCc--cCcccCccccCCCCCC-----CCchHHHHHHHHHHhhC
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDT--IEVSNLNRQFLFRQSH-----VGQSKAKVARDAVLKFR 79 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~--Ve~sNL~Rq~lf~~~d-----iG~~Ka~~a~~~l~~~n 79 (410)
.....+|-|||+||-||.++.+|...|+. .+..++.|. .+.+...+-.+++.+- .| ...++.++...+.-
T Consensus 10 ~~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG-~~pe~G~~aaee~~ 88 (384)
T PRK09330 10 ENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAG-ANPEVGRKAAEESR 88 (384)
T ss_pred cccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCC-CCHHHHHHHHHHHH
Confidence 34568899999999999999999999976 566777766 3444443333433321 11 11112222211110
Q ss_pred CCCeEEEEccCCCCCcchHhhhccCcEEEEcc------CChHHHHHHHHHHHHCCCcEEEecc
Q 015243 80 PQMSITAHHANVKDPKFNVEFFKQFNVVLNGL------DNLDARRHVNRLCLAADVPLVESGT 136 (410)
Q Consensus 80 p~v~i~~~~~~i~~~~~~~~~~~~~DvVi~a~------Dn~~~r~~i~~~c~~~~~p~i~~g~ 136 (410)
. . ....++++|.|+.+. .+-.+ -.+.+++++++++.+..-+
T Consensus 89 e---------~------I~~~l~~~D~vfI~AGmGGGTGTGaa-pvIA~iake~g~ltvaVvt 135 (384)
T PRK09330 89 E---------E------IREALEGADMVFITAGMGGGTGTGAA-PVVAEIAKELGILTVAVVT 135 (384)
T ss_pred H---------H------HHHHHcCCCEEEEEecCCCcccHHHH-HHHHHHHHHcCCcEEEEEe
Confidence 0 0 123346678776632 22233 3788999998876665443
No 316
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=89.91 E-value=1.4 Score=40.58 Aligned_cols=35 Identities=31% Similarity=0.560 Sum_probs=29.4
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+.+++|+|.| .|++|.++++.|+..|.. +.+++.+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~ 38 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN 38 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence 4567899998 599999999999999987 7777654
No 317
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.91 E-value=1.1 Score=47.79 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=50.6
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
+-+|+|+|+|.+|.++++.|...|.. ++++|.|.- |++.+ ++. ......++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~-vvvId~d~~-------------------~~~~~----~~~----g~~~i~GD~ 468 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIP-LVVIETSRT-------------------RVDEL----RER----GIRAVLGNA 468 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCC-EEEEECCHH-------------------HHHHH----HHC----CCeEEEcCC
Confidence 47899999999999999999999965 899986542 22222 221 233444555
Q ss_pred CCCc-chHhhhccCcEEEEccCChHHH
Q 015243 92 KDPK-FNVEFFKQFNVVLNGLDNLDAR 117 (410)
Q Consensus 92 ~~~~-~~~~~~~~~DvVi~a~Dn~~~r 117 (410)
++.. ....-++++|.|+.++++....
T Consensus 469 ~~~~~L~~a~i~~a~~viv~~~~~~~~ 495 (558)
T PRK10669 469 ANEEIMQLAHLDCARWLLLTIPNGYEA 495 (558)
T ss_pred CCHHHHHhcCccccCEEEEEcCChHHH
Confidence 4321 1223357889888887664433
No 318
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.90 E-value=2.2 Score=44.18 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=28.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
++|+|+|+|+.|..+++.|...|. .+++.|..
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~ 32 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN 32 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 479999999999999999999997 58888844
No 319
>PRK15076 alpha-galactosidase; Provisional
Probab=89.88 E-value=1.2 Score=46.05 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=61.2
Q ss_pred CcEEEECCcHHHHHHHH--HHH-HhCC--CcEEEEeCCccCcccCccccCCCCCCCCchH-HHH-HHHHHHhhCCCCeEE
Q 015243 13 AKVLMVGAGGIGCELLK--TLA-LSGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK-AKV-ARDAVLKFRPQMSIT 85 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~k--nLa-~~Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~K-a~~-a~~~l~~~np~v~i~ 85 (410)
.+|.|||+|++|...+- .++ ..+. ..++|+|-|.= +.+ +.. +.+.+....+.++|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~e-----------------r~~~~~~l~~~~~~~~~~~~~i~ 64 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPE-----------------RLEESEIVARKLAESLGASAKIT 64 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHH-----------------HHHHHHHHHHHHHHhcCCCeEEE
Confidence 58999999999865544 565 2333 37999984330 011 222 333344445556666
Q ss_pred EEccCCCCCcchHhhhccCcEEEEccCC--hHHHHHHH-HHHHHCCCcEEEecccCccceE
Q 015243 86 AHHANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVN-RLCLAADVPLVESGTTGFLGQV 143 (410)
Q Consensus 86 ~~~~~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~-~~c~~~~~p~i~~g~~G~~G~v 143 (410)
...+. .+-++++|+||.+.-- .+.+...+ +...++|+----..+.|..|..
T Consensus 65 ~ttD~-------~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~ 118 (431)
T PRK15076 65 ATTDR-------REALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIM 118 (431)
T ss_pred EECCH-------HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchh
Confidence 54221 2446899999997643 34444344 6778888752112555666644
No 320
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.85 E-value=0.42 Score=49.05 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=31.2
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+.+.+|+|+|+|.+|..+++.+...|. +++++|.|
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467899999999999999999999999 68888854
No 321
>PRK06196 oxidoreductase; Provisional
Probab=89.85 E-value=1.2 Score=43.51 Aligned_cols=36 Identities=22% Similarity=0.466 Sum_probs=29.2
Q ss_pred HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+.+++|+|.|+ ||||.++++.|+..|.. +.+++.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~-Vv~~~R~ 59 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAH-VIVPARR 59 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence 356788999985 89999999999999974 7777643
No 322
>PRK08643 acetoin reductase; Validated
Probab=89.81 E-value=2.1 Score=40.15 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=26.5
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++.++|.| .|+||.++++.|+..|. ++.++|.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r 34 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY 34 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 46788887 78999999999999997 5777763
No 323
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=89.80 E-value=1.7 Score=40.37 Aligned_cols=34 Identities=26% Similarity=0.583 Sum_probs=28.1
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
|++++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r 35 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL 35 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 4578999998 68999999999999887 4677653
No 324
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.77 E-value=1.4 Score=43.74 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=29.4
Q ss_pred HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+.+++|+|.|+ ||||.++++.|+..|.. +.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence 366789999996 89999999999999975 777663
No 325
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=89.76 E-value=0.45 Score=47.40 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=57.4
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.|.+++|.|||+|.+|..+++.|...|. ++..+|...- +. ... +.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~---~~~-------~~----- 187 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KD---LDF-------LT----- 187 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hh---hhh-------hh-----
Confidence 5788999999999999999999998886 4778774320 00 000 00
Q ss_pred cCCCCCcchHhhhccCcEEEEccCCh-HHHHHHHHHHHH---CCCcEEEec
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNL-DARRHVNRLCLA---ADVPLVESG 135 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~-~~r~~i~~~c~~---~~~p~i~~g 135 (410)
... ...+.++++|+|+.++... +.+..+++.... .+..+|+++
T Consensus 188 --~~~--~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~a 234 (330)
T PRK12480 188 --YKD--SVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAA 234 (330)
T ss_pred --ccC--CHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcC
Confidence 010 1246788999999987654 456666654433 244566655
No 326
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=89.74 E-value=1.2 Score=35.76 Aligned_cols=92 Identities=22% Similarity=0.392 Sum_probs=54.2
Q ss_pred hCCcEEEECCcHHHHHHHH-HHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 11 KGAKVLMVGAGGIGCELLK-TLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~k-nLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
+..+|+|+|+|++|..++. .+...|++-..+.|.| ++.+|+. +. ++.|..
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~--------------~~~~G~~-----------i~-gipV~~--- 52 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVD--------------PEKIGKE-----------IG-GIPVYG--- 52 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEEC--------------TTTTTSE-----------ET-TEEEES---
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcC--------------CCccCcE-----------EC-CEEeec---
Confidence 3568999999999998874 3446788878888833 2233321 10 223221
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~ 136 (410)
.+. ...++. +.|+.+.++....++..+.+++. .++..|..-+
T Consensus 53 ~~~---~l~~~~-~i~iaii~VP~~~a~~~~~~~~~-~gIk~i~nft 94 (96)
T PF02629_consen 53 SMD---ELEEFI-EIDIAIITVPAEAAQEVADELVE-AGIKGIVNFT 94 (96)
T ss_dssp SHH---HHHHHC-TTSEEEEES-HHHHHHHHHHHHH-TT-SEEEEES
T ss_pred cHH---Hhhhhh-CCCEEEEEcCHHHHHHHHHHHHH-cCCCEEEEeC
Confidence 111 112333 38999999876666666666555 7777666543
No 327
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.74 E-value=0.49 Score=46.63 Aligned_cols=31 Identities=39% Similarity=0.652 Sum_probs=28.7
Q ss_pred cEEEECCcHHHHHHHHHHHHhCC-CcEEEEeC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGF-QDIHIIDM 44 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~ 44 (410)
+|.|||+|.+|+.++..|+..|+ .++.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 79999999999999999999996 67999994
No 328
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=89.74 E-value=1.5 Score=41.03 Aligned_cols=36 Identities=28% Similarity=0.515 Sum_probs=30.5
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+.+++++|.| .|+||..+++.|+..|. ++.++|.+
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~ 44 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN 44 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence 36788999998 58999999999999997 58887754
No 329
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.73 E-value=0.6 Score=44.23 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=34.8
Q ss_pred HHHHHHHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 4 ERQLEAIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 4 ~e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+-.|.++++++++|.|+ ||||.++++.|+..|. ++.++|.+
T Consensus 6 ~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 6 PMAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 34689999999999985 8999999999999997 47777754
No 330
>PRK12827 short chain dehydrogenase; Provisional
Probab=89.70 E-value=2.1 Score=39.69 Aligned_cols=33 Identities=30% Similarity=0.666 Sum_probs=28.3
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
|.+++++|.| .|+||.++++.|+..|.. +++++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~ 37 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLD 37 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEc
Confidence 5678899998 799999999999999975 67766
No 331
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=89.66 E-value=0.59 Score=47.46 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCcEEEECCcHHHHHHHHHHHHh-CCCcEEEEeCCccCcc
Q 015243 12 GAKVLMVGAGGIGCELLKTLALS-GFQDIHIIDMDTIEVS 50 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~-Gv~~i~liD~D~Ve~s 50 (410)
...|+|||+|-+|+.+|..|++. |..+++|+|.+.+-..
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g 69 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG 69 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence 44699999999999999999985 8778999998876543
No 332
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=89.64 E-value=0.48 Score=46.47 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=31.6
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+.+++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 568999999999999999999999997 89998743
No 333
>PRK07109 short chain dehydrogenase; Provisional
Probab=89.55 E-value=1.6 Score=43.25 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=28.6
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
.+.+++|+|.| .||||.++++.|+..|. ++.+++
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~ 39 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLA 39 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEE
Confidence 35678899998 58999999999999996 477776
No 334
>PRK08226 short chain dehydrogenase; Provisional
Probab=89.54 E-value=1.5 Score=41.24 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=29.7
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++.+++++|.| .|+||..+++.|+..|.. +.+++.
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r 38 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGAN-LILLDI 38 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecC
Confidence 46788999997 789999999999999975 777763
No 335
>PRK08278 short chain dehydrogenase; Provisional
Probab=89.52 E-value=2 Score=41.02 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=29.4
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+.+++++|.| .|++|.++++.|+..|. ++.++|..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT 39 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 5678899998 68999999999999997 57777744
No 336
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=89.51 E-value=2.1 Score=41.85 Aligned_cols=80 Identities=18% Similarity=0.165 Sum_probs=46.5
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
+++|+|.| .|+||+.+++.|+..|.. +.+++.|.-.. +.....+......-+++....+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~-V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~D 64 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYT-INATVRDPKDR-------------------KKTDHLLALDGAKERLKLFKAD 64 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCE-EEEEEcCCcch-------------------hhHHHHHhccCCCCceEEEeCC
Confidence 57899998 599999999999999864 55554332110 0011111000011245555666
Q ss_pred CCCCcchHhhhccCcEEEEcc
Q 015243 91 VKDPKFNVEFFKQFNVVLNGL 111 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~ 111 (410)
+++...-...+++.|+||.+.
T Consensus 65 ~~d~~~~~~~~~~~d~vih~A 85 (325)
T PLN02989 65 LLDEGSFELAIDGCETVFHTA 85 (325)
T ss_pred CCCchHHHHHHcCCCEEEEeC
Confidence 655443445677889888854
No 337
>PLN02780 ketoreductase/ oxidoreductase
Probab=89.50 E-value=2.6 Score=41.65 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=43.5
Q ss_pred hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
.++.++|.| .||||.++++.|+..|. ++.+++.+ ..+.+.+++.+++..+..++..+..
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~-------------------~~~l~~~~~~l~~~~~~~~~~~~~~ 111 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARN-------------------PDKLKDVSDSIQSKYSKTQIKTVVV 111 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECC-------------------HHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 467888888 57999999999999997 58887632 1345556666666666556655554
Q ss_pred CCC
Q 015243 90 NVK 92 (410)
Q Consensus 90 ~i~ 92 (410)
+++
T Consensus 112 Dl~ 114 (320)
T PLN02780 112 DFS 114 (320)
T ss_pred ECC
Confidence 443
No 338
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=89.43 E-value=0.44 Score=46.98 Aligned_cols=31 Identities=39% Similarity=0.680 Sum_probs=29.4
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCC-cEEEEe
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQ-DIHIID 43 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD 43 (410)
.||.|+|+|.+|+.++-.|+.-+++ .+.|+|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiD 32 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLID 32 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEE
Confidence 4799999999999999999999999 999998
No 339
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=89.43 E-value=2.7 Score=40.49 Aligned_cols=97 Identities=22% Similarity=0.285 Sum_probs=59.1
Q ss_pred CcEEEEC-CcHHHHHHHHHHHH-hCCCcEEEEe-CCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCC-CCeEEEEc
Q 015243 13 AKVLMVG-AGGIGCELLKTLAL-SGFQDIHIID-MDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRP-QMSITAHH 88 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~-~Gv~~i~liD-~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np-~v~i~~~~ 88 (410)
.||.|+| +|.+|..+++.+.. .++.-+-++| .+.-. +|+. +.+. ....+ .+.+ +
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--------------~~~~----~~~~-~~~~~~gv~~--~- 59 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--------------QGTD----AGEL-AGIGKVGVPV--T- 59 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--------------cCCC----HHHh-cCcCcCCcee--e-
Confidence 4899999 59999999999985 4665555666 22100 1111 1111 11111 1111 1
Q ss_pred cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccCc
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGF 139 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G~ 139 (410)
.++ ++....+|+||+++ .+++-...-..|.++++|++.+-+ |+
T Consensus 60 ~d~------~~l~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt-g~ 102 (266)
T TIGR00036 60 DDL------EAVETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT-GF 102 (266)
T ss_pred CCH------HHhcCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC-CC
Confidence 111 12234689999998 567777888899999999998765 54
No 340
>PLN02928 oxidoreductase family protein
Probab=89.42 E-value=0.42 Score=48.00 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=31.0
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.|.+++|.|+|.|.||.++++.|...|+ +++.+|.
T Consensus 156 ~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr 190 (347)
T PLN02928 156 TLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR 190 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 4788999999999999999999998887 5777764
No 341
>PRK08818 prephenate dehydrogenase; Provisional
Probab=89.41 E-value=1.9 Score=43.66 Aligned_cols=35 Identities=26% Similarity=0.164 Sum_probs=28.1
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+...+|+|||. |.+|..+++.|-...-.+|+.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 45789999999 999999999999653335777775
No 342
>PRK08374 homoserine dehydrogenase; Provisional
Probab=89.38 E-value=3.3 Score=41.35 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=58.5
Q ss_pred CCcEEEECCcHHHHHHHHHHHH--------hCCC--cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLAL--------SGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQ 81 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~--------~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~ 81 (410)
..+|.|+|+|.+|+.+++.|.. .|+. -+.+.|.+ ..+|.++.+.-.+ +.+..++...
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~---------~~~~~~~Gid~~~---l~~~~~~~~~- 68 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTS---------GTIWLPEDIDLRE---AKEVKENFGK- 68 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCC---------ccccCCCCCChHH---HHHhhhccCc-
Confidence 3689999999999999999876 5643 23344532 1223433333222 2222222111
Q ss_pred CeEEEEccCCC-CCcchHhhh--ccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecc
Q 015243 82 MSITAHHANVK-DPKFNVEFF--KQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGT 136 (410)
Q Consensus 82 v~i~~~~~~i~-~~~~~~~~~--~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~ 136 (410)
+..+..... .....++++ ..+|+||+++....+. .+-..+...+++++.+..
T Consensus 69 --~~~~~~~~~~~~~~~~ell~~~~~DVvVd~t~~~~a~-~~~~~al~~G~~VVtanK 123 (336)
T PRK08374 69 --LSNWGNDYEVYNFSPEEIVEEIDADIVVDVTNDKNAH-EWHLEALKEGKSVVTSNK 123 (336)
T ss_pred --hhhccccccccCCCHHHHHhcCCCCEEEECCCcHHHH-HHHHHHHhhCCcEEECCH
Confidence 111110000 001123454 4789999998654444 445566678898886643
No 343
>PRK07806 short chain dehydrogenase; Provisional
Probab=89.37 E-value=1.7 Score=40.45 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=27.4
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+.+++++|.|+ |+||..+++.|+..|.. +.+++
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~-V~~~~ 37 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAH-VVVNY 37 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCE-EEEEe
Confidence 56789999995 99999999999999964 55554
No 344
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=89.35 E-value=2.9 Score=44.59 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=66.9
Q ss_pred HHHhCCcEEEECCcHHHHHHHHHHHH-----hCC------CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHH
Q 015243 8 EAIKGAKVLMVGAGGIGCELLKTLAL-----SGF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVL 76 (410)
Q Consensus 8 ~~L~~~~VlvvG~GgiG~ev~knLa~-----~Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~ 76 (410)
.+|.+.||+++|+|+.|.-+++.|+. .|+ ++|.++|.+-+=..+ | .+++...|..-++.
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~--- 386 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD--- 386 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence 46889999999999999999999987 477 689999977532221 1 11133444443332
Q ss_pred hhCCCCeEEEEccCCCCCcchHhhhcc--CcEEEEccC--ChHHHHHHHHHHHHCCCcEEEecc
Q 015243 77 KFRPQMSITAHHANVKDPKFNVEFFKQ--FNVVLNGLD--NLDARRHVNRLCLAADVPLVESGT 136 (410)
Q Consensus 77 ~~np~v~i~~~~~~i~~~~~~~~~~~~--~DvVi~a~D--n~~~r~~i~~~c~~~~~p~i~~g~ 136 (410)
.+. . .-..+.++. .|++|.+.. +.-....+..++..+..|+|.+-+
T Consensus 387 --~~~---------~---~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS 436 (581)
T PLN03129 387 --HEP---------G---ASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS 436 (581)
T ss_pred --ccc---------C---CCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 111 0 012344555 677777542 344567777788777888887643
No 345
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=89.30 E-value=0.38 Score=48.88 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=65.8
Q ss_pred HHHhCCcEEEECCcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCccccCCCCC-C--CCchHHHHHHHHHHhhCCCC
Q 015243 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQS-H--VGQSKAKVARDAVLKFRPQM 82 (410)
Q Consensus 8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~-d--iG~~Ka~~a~~~l~~~np~v 82 (410)
++|++.+|++.|+|+-|+.+++.|..+|+. +|.++|.--+ ++... | .++.|.+.+.+......
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~---------l~~~r~~~~~~~~k~~~a~~~~~~~~--- 262 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL---------LYDGREDLTMNQKKYAKAIEDTGERT--- 262 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc---------ccCCCcccccchHHHHHHHhhhcccc---
Confidence 468899999999999999999999999998 9999996543 22222 2 46667665543332221
Q ss_pred eEEEEccCCCCCcchHhhhccCcEEEEccCC-hHHHHHHHHHHHHCCCcEEEec
Q 015243 83 SITAHHANVKDPKFNVEFFKQFNVVLNGLDN-LDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 83 ~i~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn-~~~r~~i~~~c~~~~~p~i~~g 135 (410)
. ..-+.+.|+.|.+... .-...++.+++.. |+|.+-
T Consensus 263 ~--------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma~~---PiIfal 299 (432)
T COG0281 263 L--------------DLALAGADVLIGVSGVGAFTEEMVKEMAKH---PIIFAL 299 (432)
T ss_pred c--------------cccccCCCEEEEcCCCCCcCHHHHHHhccC---CEEeec
Confidence 0 0134678888886543 2234555666543 777664
No 346
>PRK09072 short chain dehydrogenase; Provisional
Probab=89.29 E-value=1.4 Score=41.51 Aligned_cols=34 Identities=35% Similarity=0.683 Sum_probs=29.0
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+++++|.| .|++|.++++.|+..|.. +++++.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~-V~~~~r 37 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGAR-LLLVGR 37 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEEC
Confidence 4678899998 699999999999999964 888774
No 347
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=89.26 E-value=0.52 Score=46.94 Aligned_cols=36 Identities=36% Similarity=0.429 Sum_probs=30.9
Q ss_pred HHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 7 LEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 7 q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
...|++++|.|||+|.+|..++++|..+|+ ++.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 467899999999999999999999999998 455544
No 348
>PRK07074 short chain dehydrogenase; Provisional
Probab=89.25 E-value=1.8 Score=40.67 Aligned_cols=32 Identities=31% Similarity=0.550 Sum_probs=27.0
Q ss_pred CCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 12 GAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 12 ~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+++++|.|+ |+||.++++.|+..|. ++.++|.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r 34 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI 34 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 567999986 8999999999999986 5787764
No 349
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=89.17 E-value=2.8 Score=41.98 Aligned_cols=95 Identities=23% Similarity=0.257 Sum_probs=53.6
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCcE-EEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGFQDI-HIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i-~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
.||+|+|+ |.+|.++++.|....--++ .+.|. ...|+. +.+..|.+... ....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~----------------~~~g~~--------l~~~~~~~~~~-~~~~ 57 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR----------------SSAGKP--------LSDVHPHLRGL-VDLV 57 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc----------------cccCcc--------hHHhCcccccc-cCce
Confidence 68999997 8899999999997633334 33331 111211 11111211100 0001
Q ss_pred CCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
+.+ .+...+.+.|+|+.|+.+.....++.. +.+.++++||.+
T Consensus 58 ~~~--~~~~~~~~vD~Vf~alP~~~~~~~v~~-a~~aG~~VID~S 99 (343)
T PRK00436 58 LEP--LDPEILAGADVVFLALPHGVSMDLAPQ-LLEAGVKVIDLS 99 (343)
T ss_pred eec--CCHHHhcCCCEEEECCCcHHHHHHHHH-HHhCCCEEEECC
Confidence 111 111245779999999988655555444 556899999865
No 350
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=89.10 E-value=1.8 Score=41.36 Aligned_cols=30 Identities=27% Similarity=0.528 Sum_probs=25.2
Q ss_pred cEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 14 ~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
||+|.| .|.+|..+++.|...|. ++++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 589998 59999999999999885 5777664
No 351
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=89.08 E-value=6.1 Score=36.58 Aligned_cols=95 Identities=20% Similarity=0.321 Sum_probs=58.4
Q ss_pred EEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCCC
Q 015243 15 VLMVGA-GGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVKD 93 (410)
Q Consensus 15 VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 93 (410)
|+|+|+ |.+|..++..|...|.. ++++ .|.. +. ...+.++. +.+++. ..+..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l---------------~R~~-----~~-~~~~~l~~--~g~~vv--~~d~~~ 54 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRAL---------------VRDP-----SS-DRAQQLQA--LGAEVV--EADYDD 54 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEE---------------ESSS-----HH-HHHHHHHH--TTTEEE--ES-TT-
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEE---------------Eecc-----ch-hhhhhhhc--ccceEe--ecccCC
Confidence 789996 99999999999996655 4442 1221 11 22333443 245543 444544
Q ss_pred CcchHhhhccCcEEEEccCC-----hHHHHHHHHHHHHCCCcEEEec
Q 015243 94 PKFNVEFFKQFNVVLNGLDN-----LDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 94 ~~~~~~~~~~~DvVi~a~Dn-----~~~r~~i~~~c~~~~~p~i~~g 135 (410)
...-...++++|.|+.++.. .+....+-+.|.+.++..+--+
T Consensus 55 ~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~s 101 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPS 101 (233)
T ss_dssp HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEE
Confidence 33445678999999998872 2344556777888888766443
No 352
>PRK08324 short chain dehydrogenase; Validated
Probab=89.06 E-value=3 Score=45.68 Aligned_cols=34 Identities=38% Similarity=0.591 Sum_probs=28.9
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+++|+|.| .|+||..+++.|+..|. ++.++|.
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r 454 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADL 454 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence 3457899999 59999999999999997 6888874
No 353
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=88.98 E-value=1.4 Score=44.17 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=57.7
Q ss_pred hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHH-----HHhhCCCCeE
Q 015243 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDA-----VLKFRPQMSI 84 (410)
Q Consensus 11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~-----l~~~np~v~i 84 (410)
+..||+|+| .|-+|.++++.|.....-+++.+..+ .++.|++-..+. .. +..-..++.+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s--------------~~~~G~~~~~~~-~~~~~~~~~~~~~~~~v 66 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAAS--------------ERSAGKTYGEAV-RWQLDGPIPEEVADMEV 66 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC--------------hhhcCCcccccc-cccccccccccccceEE
Confidence 347999998 79999999999997666677776321 223333221110 00 0000001112
Q ss_pred EEEccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 85 TAHHANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 85 ~~~~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
... +.+-+.++|+|+.|+..-.+..++ ......++.+|+.+
T Consensus 67 ~~~---------~~~~~~~~DvVf~a~p~~~s~~~~-~~~~~~G~~vIDls 107 (349)
T PRK08664 67 VST---------DPEAVDDVDIVFSALPSDVAGEVE-EEFAKAGKPVFSNA 107 (349)
T ss_pred EeC---------CHHHhcCCCEEEEeCChhHHHHHH-HHHHHCCCEEEECC
Confidence 111 122347899999998876665555 45566788888754
No 354
>PRK13529 malate dehydrogenase; Provisional
Probab=88.96 E-value=2.8 Score=44.54 Aligned_cols=113 Identities=13% Similarity=0.264 Sum_probs=66.6
Q ss_pred HHHhCCcEEEECCcHHHHHHHHHHHH----hCC------CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh
Q 015243 8 EAIKGAKVLMVGAGGIGCELLKTLAL----SGF------QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK 77 (410)
Q Consensus 8 ~~L~~~~VlvvG~GgiG~ev~knLa~----~Gv------~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~ 77 (410)
.+|.+.||+++|+|+.|.-+++.|+. .|+ ++|.++|.+-+=.+. | .|+...|..-++.
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~--r------~~l~~~k~~fa~~---- 358 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDD--M------PDLLDFQKPYARK---- 358 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCC--C------CcchHHHHHHhhh----
Confidence 46889999999999999999999997 599 589999977532211 1 1233334333322
Q ss_pred hCCCCeEEEEccCCCCCcchHhhhccC--cEEEEccC--ChHHHHHHHHHHHHCCCcEEEecc
Q 015243 78 FRPQMSITAHHANVKDPKFNVEFFKQF--NVVLNGLD--NLDARRHVNRLCLAADVPLVESGT 136 (410)
Q Consensus 78 ~np~v~i~~~~~~i~~~~~~~~~~~~~--DvVi~a~D--n~~~r~~i~~~c~~~~~p~i~~g~ 136 (410)
.++. ...... ....-..+.++.. |++|.+.. +.-....+..|+.....|+|.+-+
T Consensus 359 ~~~~---~~~~~~-~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 417 (563)
T PRK13529 359 REEL---ADWDTE-GDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLS 417 (563)
T ss_pred cccc---cccccc-cCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 1211 000000 0001123445555 77777543 334566777777777788887643
No 355
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=88.96 E-value=1.9 Score=40.52 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=29.1
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+|.+++|+|.| .|+||..+++.|+..|.. +.+++.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~ 47 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTH 47 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 46788999998 589999999999999975 666553
No 356
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.95 E-value=2.6 Score=45.81 Aligned_cols=96 Identities=17% Similarity=0.276 Sum_probs=54.0
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchH--HHHHHHHHHhhCCCCeEEEEc
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSK--AKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~K--a~~a~~~l~~~np~v~i~~~~ 88 (410)
..++|+|||+|..|-..+..|++.|.. ++++|...- +.-..-|.-...-.+| .+...+.++++ ++++....
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~-Vtv~e~~~~----~GG~l~~gip~~~l~~~~~~~~~~~~~~~--Gv~~~~~~ 381 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQ-VDVFDRHPE----IGGMLTFGIPPFKLDKTVLSQRREIFTAM--GIDFHLNC 381 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCc-EEEEeCCCC----CCCeeeccCCcccCCHHHHHHHHHHHHHC--CeEEEcCC
Confidence 478999999999999999999999984 899885532 1111111111111122 22223344444 33433221
Q ss_pred cCCCCCcchHhhhccCcEEEEccCCh
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNL 114 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~ 114 (410)
.+.......+....||.|+.|+...
T Consensus 382 -~v~~~~~~~~l~~~~DaV~latGa~ 406 (639)
T PRK12809 382 -EIGRDITFSDLTSEYDAVFIGVGTY 406 (639)
T ss_pred -ccCCcCCHHHHHhcCCEEEEeCCCC
Confidence 1211111224456899999988754
No 357
>PRK07856 short chain dehydrogenase; Provisional
Probab=88.94 E-value=0.95 Score=42.49 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=30.2
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
+.+++++|.| .|+||.++++.|+..|. ++.++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 5678999998 57999999999999997 577877653
No 358
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=88.94 E-value=0.59 Score=40.40 Aligned_cols=28 Identities=32% Similarity=0.684 Sum_probs=24.6
Q ss_pred EEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 15 VLMVGAGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 15 VlvvG~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
|+|+|+|++|+.++-.|...|.. +++++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~ 28 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVS 28 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEE
Confidence 78999999999999999997765 77765
No 359
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=88.80 E-value=0.64 Score=46.50 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=36.2
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNL 52 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL 52 (410)
.+.+|+|||.|-+|+.+|..|++.|. +++++|.+.+...+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s 43 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA 43 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence 46789999999999999999999999 899999888865443
No 360
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=88.77 E-value=2.2 Score=39.91 Aligned_cols=34 Identities=41% Similarity=0.588 Sum_probs=28.2
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
.|.+++++|.| .|+||..+++.|+..|. ++.++|
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~ 40 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIIND 40 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEc
Confidence 35678899998 68999999999999996 566665
No 361
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=88.77 E-value=1.9 Score=42.11 Aligned_cols=31 Identities=26% Similarity=0.512 Sum_probs=27.3
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+|.+||+|-+|..++.+|...|. ++++.|.+
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~ 32 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIG 32 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 69999999999999999999996 57787754
No 362
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.74 E-value=0.49 Score=48.01 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=30.8
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.|.+++|.|||+|.||..+++.|...|+. +...|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence 47899999999999999999999999975 666674
No 363
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=88.74 E-value=1.8 Score=40.98 Aligned_cols=34 Identities=35% Similarity=0.529 Sum_probs=28.2
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
++.+++++|.| .|++|.++++.|+..|.. +.++|
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~ 41 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFND 41 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 45678899998 589999999999999976 66655
No 364
>PRK06114 short chain dehydrogenase; Provisional
Probab=88.73 E-value=2.1 Score=40.17 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=29.0
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+.++.++|.| .||||.++++.|+..|. ++.++|.
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r 40 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL 40 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 36778899987 77999999999999997 5667664
No 365
>PRK12746 short chain dehydrogenase; Provisional
Probab=88.67 E-value=1.3 Score=41.47 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.4
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQ 37 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~ 37 (410)
++++++++|.| .|++|.++++.|+..|..
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~ 32 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGAL 32 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence 46678999998 789999999999998864
No 366
>PTZ00188 adrenodoxin reductase; Provisional
Probab=88.67 E-value=3.5 Score=43.35 Aligned_cols=97 Identities=18% Similarity=0.108 Sum_probs=55.5
Q ss_pred hCCcEEEECCcHHHHHHHHHHH-HhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHh--hCCCCeEEEE
Q 015243 11 KGAKVLMVGAGGIGCELLKTLA-LSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLK--FRPQMSITAH 87 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa-~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~--~np~v~i~~~ 87 (410)
..++|+|||+|.-|++.|..|+ ..|.. ++|+|....--.-+ |.-. -+++ ++...+.+.+.+ .++.++...
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~-VtlfEk~p~pgGLv-R~GV-aPdh---~~~k~v~~~f~~~~~~~~v~f~g- 110 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVK-VDIFEKLPNPYGLI-RYGV-APDH---IHVKNTYKTFDPVFLSPNYRFFG- 110 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCe-EEEEecCCCCccEE-EEeC-CCCC---ccHHHHHHHHHHHHhhCCeEEEe-
Confidence 3578999999999999999765 56654 89988655443322 2211 1222 222222233222 234544431
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCCh
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDNL 114 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~ 114 (410)
.-.+..+.-.+++...||.||.|+...
T Consensus 111 nv~VG~Dvt~eeL~~~YDAVIlAtGA~ 137 (506)
T PTZ00188 111 NVHVGVDLKMEELRNHYNCVIFCCGAS 137 (506)
T ss_pred eeEecCccCHHHHHhcCCEEEEEcCCC
Confidence 222222222345667999999998754
No 367
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=88.63 E-value=5.1 Score=40.06 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=46.7
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
..+|+|+|+||+|.-.++....+| .+++.+| ++..|.+.+++.-. +.-|.+...+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a~~lGA----d~~i~~~~~~- 221 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELAKKLGA----DHVINSSDSD- 221 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHHHHhCC----cEEEEcCCch-
Confidence 578999999999998888888899 7788776 45567666555422 2222221111
Q ss_pred CCCcchHhhhccCcEEEEccC
Q 015243 92 KDPKFNVEFFKQFNVVLNGLD 112 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~D 112 (410)
.....-+.+|+|+++..
T Consensus 222 ----~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 222 ----ALEAVKEIADAIIDTVG 238 (339)
T ss_pred ----hhHHhHhhCcEEEECCC
Confidence 11122233999999887
No 368
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=88.63 E-value=1.4 Score=43.82 Aligned_cols=89 Identities=20% Similarity=0.267 Sum_probs=56.9
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCC-cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQ-DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
.+.++++.|+|.|.||.++++.+. |+| ++...|...- ++.+. ..+ ..
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~~------------------~~~~~------~~~----~~-- 190 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSPN------------------PEAEK------ELG----AR-- 190 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCCC------------------hHHHh------hcC----ce--
Confidence 578999999999999999999999 665 3444442111 11110 000 00
Q ss_pred ccCCCCCcchHhhhccCcEEEE-ccCChHHHHHHHHHHHHCCC---cEEEec
Q 015243 88 HANVKDPKFNVEFFKQFNVVLN-GLDNLDARRHVNRLCLAADV---PLVESG 135 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~-a~Dn~~~r~~i~~~c~~~~~---p~i~~g 135 (410)
.+ . .++.++++|+|+. |-.+.+++..+|+.-.+.-+ -+|+.+
T Consensus 191 --y~---~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNta 236 (324)
T COG1052 191 --YV---D-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTA 236 (324)
T ss_pred --ec---c-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECC
Confidence 11 1 3578899999877 45677889888887665433 355554
No 369
>PLN00198 anthocyanidin reductase; Provisional
Probab=88.61 E-value=4.2 Score=40.01 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=28.0
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+++++|+|.| +|.||+.+++.|+..|. ++.+++.|
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~ 42 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD 42 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence 3568899998 88999999999999986 46555433
No 370
>PRK07677 short chain dehydrogenase; Provisional
Probab=88.60 E-value=1.9 Score=40.37 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.3
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+++++|.| .||+|..+++.|+..|. ++.++|.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~ 34 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT 34 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36788887 57899999999999998 68887744
No 371
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.58 E-value=2.3 Score=41.28 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=26.8
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+|.|||+|.+|..++++|+..|.. +.+.|.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~-v~~~d~ 33 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYS-LVVYDR 33 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCe-EEEEcC
Confidence 4799999999999999999999864 667664
No 372
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=88.57 E-value=0.55 Score=46.93 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=31.3
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V 47 (410)
...|+|||+|.+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 6999998764
No 373
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=88.54 E-value=2.1 Score=39.80 Aligned_cols=132 Identities=17% Similarity=0.119 Sum_probs=76.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEe-------------------------------------------------
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIID------------------------------------------------- 43 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD------------------------------------------------- 43 (410)
+++.|+|.|-+|+.++..|+..|.. +++.-
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~e-V~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l 80 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHE-VIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL 80 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCe-EEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence 5789999999999999999999853 33320
Q ss_pred ------CCccCcccCccccCCCCCCCCc-hHHHHHHHHHHhhCCCCeEEEEccCCCCCcchHhhhccCc-EEEEccCChH
Q 015243 44 ------MDTIEVSNLNRQFLFRQSHVGQ-SKAKVARDAVLKFRPQMSITAHHANVKDPKFNVEFFKQFN-VVLNGLDNLD 115 (410)
Q Consensus 44 ------~D~Ve~sNL~Rq~lf~~~diG~-~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~~D-vVi~a~Dn~~ 115 (410)
-=.|+.+|---- .+...+.+. +-...+++.+.+.-|+.+|..-...+.-..+...--...+ .|..|.|+.+
T Consensus 81 ~~~~~~KIvID~tnp~~~-~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~ 159 (211)
T COG2085 81 RDALGGKIVIDATNPIEV-NGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAE 159 (211)
T ss_pred HHHhCCeEEEecCCCccc-cCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEecCcHH
Confidence 111223331000 133334432 2233456667777777654332222211100000011122 2455778899
Q ss_pred HHHHHHHHHHHCCCcEEEecccCccceEEEE
Q 015243 116 ARRHVNRLCLAADVPLVESGTTGFLGQVTVH 146 (410)
Q Consensus 116 ~r~~i~~~c~~~~~p~i~~g~~G~~G~v~~~ 146 (410)
++..+-+++.+.+.--+++|..-....+...
T Consensus 160 Ak~~v~~L~~~iG~~~ld~G~L~~a~~le~~ 190 (211)
T COG2085 160 AKAVVAELAEDIGFRPLDAGPLENARILEPG 190 (211)
T ss_pred HHHHHHHHHHhcCcceeeccccccccccccc
Confidence 9999999999999989999887666555443
No 374
>PRK07890 short chain dehydrogenase; Provisional
Probab=88.50 E-value=1.9 Score=40.33 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=28.6
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
|.+++|+|.| .|+||..+++.|+.-|. ++.++|
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~ 36 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAA 36 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEe
Confidence 5678999998 58999999999999997 577876
No 375
>PRK05717 oxidoreductase; Validated
Probab=88.49 E-value=1.6 Score=41.08 Aligned_cols=35 Identities=31% Similarity=0.551 Sum_probs=29.4
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+++++|+|.| .|+||.++++.|+..|. ++.++|.+
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 5678899998 58999999999999996 57887743
No 376
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=88.48 E-value=2.2 Score=39.87 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=26.0
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGR 32 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEEC
Confidence 3688998 58999999999999997 4777764
No 377
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=88.43 E-value=2.5 Score=42.22 Aligned_cols=90 Identities=18% Similarity=0.318 Sum_probs=54.4
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCcEE--EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGFQDIH--IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~i~--liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
.+|+|+|+ |-+|.|+++.|...+.-... .+- +.+..|++=. +. .-+..++
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~---------------s~~~aG~~l~------~~--~~~l~~~---- 57 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLA---------------SSESAGHSVP------FA--GKNLRVR---- 57 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEE---------------CcccCCCeec------cC--CcceEEe----
Confidence 68999995 89999999999976654333 332 2233454310 00 0011221
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
... ..+ ++++|+|+.|+.+..++.++.+ +.+.++.+||.+
T Consensus 58 ~~~----~~~-~~~vD~vFla~p~~~s~~~v~~-~~~~G~~VIDlS 97 (336)
T PRK05671 58 EVD----SFD-FSQVQLAFFAAGAAVSRSFAEK-ARAAGCSVIDLS 97 (336)
T ss_pred eCC----hHH-hcCCCEEEEcCCHHHHHHHHHH-HHHCCCeEEECc
Confidence 111 123 4889999999987656665444 466789999854
No 378
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=88.43 E-value=0.61 Score=47.22 Aligned_cols=35 Identities=23% Similarity=0.452 Sum_probs=31.3
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+...+|+|+|+|.+|..+++.+..+|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 466889999999999999999999998 59999854
No 379
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=88.38 E-value=1.6 Score=42.83 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=29.1
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
..+|+|.|+|++|..++..+..+|..+++.+|.
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 679999999999999999999999887877763
No 380
>PLN02494 adenosylhomocysteinase
Probab=88.37 E-value=0.63 Score=48.43 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=32.5
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V 47 (410)
+.+++|+|+|+|.+|..+++.+...|+ +++++|.|..
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~ 288 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI 288 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence 578999999999999999999999998 5888886643
No 381
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=88.30 E-value=2.1 Score=46.95 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=27.6
Q ss_pred hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+++|+|.| .|+||.++++.|+..|. ++.++|.
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r 446 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL 446 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence 457788888 58999999999999997 5777763
No 382
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=88.23 E-value=1.9 Score=43.19 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=28.2
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
..+|+|.|+|++|..++..+...|..++..+|
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~ 223 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVD 223 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 56899999999999998888889998888876
No 383
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=88.22 E-value=0.68 Score=45.58 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=29.6
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+|.|||+|-+|+.++-.|+..|.+.+.++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 58999999999999999999999878999995
No 384
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=88.22 E-value=3 Score=41.82 Aligned_cols=91 Identities=15% Similarity=0.296 Sum_probs=56.3
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
..||+|+| .|.+|.|+++.|...+.- ++..+. .....|+.=.. ...++.+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~rsaGk~~~~--------~~~~~~v~--- 60 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SARSAGKKVTF--------EGRDYTVE--- 60 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------ccCCCCCeeee--------cCceeEEE---
Confidence 56899999 688999999999986654 444432 22233332111 01111111
Q ss_pred cCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
.+ ..+-+.++|+||.|+.+-.++.+..++ .+.+..+||.+
T Consensus 61 -~~-----~~~~~~~~D~vf~a~p~~~s~~~~~~~-~~~g~~VIDlS 100 (344)
T PLN02383 61 -EL-----TEDSFDGVDIALFSAGGSISKKFGPIA-VDKGAVVVDNS 100 (344)
T ss_pred -eC-----CHHHHcCCCEEEECCCcHHHHHHHHHH-HhCCCEEEECC
Confidence 11 112347899999999887777776654 45688899854
No 385
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=88.21 E-value=1.5 Score=43.04 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=45.5
Q ss_pred EECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC----CCCeEEEEccCC
Q 015243 17 MVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR----PQMSITAHHANV 91 (410)
Q Consensus 17 vvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n----p~v~i~~~~~~i 91 (410)
|||+|.+|+.++-.|+..|+ ++|.|+|- -..|++..+.-|.... .++++.. .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~-- 57 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIRS--G-- 57 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEec--C--
Confidence 68999999999999999998 57999983 1233444444444433 2233331 1
Q ss_pred CCCcchHhhhccCcEEEEccC
Q 015243 92 KDPKFNVEFFKQFNVVLNGLD 112 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~D 112 (410)
+.+-++++|+||.+..
T Consensus 58 -----~~~~~~daDivVitag 73 (299)
T TIGR01771 58 -----DYSDCKDADLVVITAG 73 (299)
T ss_pred -----CHHHHCCCCEEEECCC
Confidence 2356799999998654
No 386
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.20 E-value=0.66 Score=47.14 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=30.4
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999996 699999876
No 387
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=88.19 E-value=2 Score=42.95 Aligned_cols=91 Identities=19% Similarity=0.320 Sum_probs=55.2
Q ss_pred cEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (410)
Q Consensus 14 ~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 92 (410)
+|+||| .|.+|.++++.|...|...+.|+= +.+..+.|+.=. . .+..+ ...++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~-------------~as~~~~g~~~~---------~-~~~~~--~~~~~~ 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL-------------LASDRSAGRKVT---------F-KGKEL--EVNEAK 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE-------------EeccccCCCeee---------e-CCeeE--EEEeCC
Confidence 689999 799999999999987665333321 123333443211 0 11111 111221
Q ss_pred CCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 93 ~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
..-+.++|+|+.|+.+..++.+..+. .+.+..+|+.+
T Consensus 56 -----~~~~~~~D~v~~a~g~~~s~~~a~~~-~~~G~~VID~s 92 (339)
T TIGR01296 56 -----IESFEGIDIALFSAGGSVSKEFAPKA-AKCGAIVIDNT 92 (339)
T ss_pred -----hHHhcCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 12348999999999988777776554 45677888765
No 388
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=88.19 E-value=0.74 Score=44.95 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=31.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCc
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEV 49 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~ 49 (410)
.|+|||+|-+|+.+|..|++.|. +++|+|.+.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999998 799999996543
No 389
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=88.17 E-value=0.66 Score=48.32 Aligned_cols=37 Identities=24% Similarity=0.419 Sum_probs=32.5
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
.|.+++|+|+|+|.+|..+++.|...|. +++++|.|.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 4789999999999999999999999998 588887553
No 390
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=88.11 E-value=2.2 Score=40.80 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=29.1
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
+|+|||+|..|.+.|..|.+.|.. ++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence 689999999999999999999976 99999754
No 391
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=88.08 E-value=1.9 Score=40.46 Aligned_cols=34 Identities=29% Similarity=0.539 Sum_probs=28.8
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+|.+++|+|.| .|+||..+++.|+..|.. +.++|
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~-vv~~~ 42 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSD 42 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCe-EEEEe
Confidence 47789999997 789999999999999975 56655
No 392
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.05 E-value=1.6 Score=43.59 Aligned_cols=33 Identities=33% Similarity=0.635 Sum_probs=28.8
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+|+|.|+|++|..++......|+.++..+|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 678999999999999998888899887888764
No 393
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=88.05 E-value=1.7 Score=44.90 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=51.8
Q ss_pred CcEEEECCcHHHHHHHH--HHHHh-CC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 13 AKVLMVGAGGIGCELLK--TLALS-GF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~k--nLa~~-Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
.+|.|||+|++|...+- .++.. +. .++.|+|.|. .-+.+ -...+.+.+....+..+|...
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~---e~l~~------------~~~~~~~~~~~~~~~~~I~~t 65 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE---ERLET------------VEILAKKIVEELGAPLKIEAT 65 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH---HHHHH------------HHHHHHHHHHhcCCCeEEEEe
Confidence 37999999999997554 45422 33 4799988433 11110 011123333334444455432
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCC--hHHHHHHHHHHHHCCCc
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVP 130 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~~p 130 (410)
.+ -.+-++++|+||.+.-. .+.+..-.+...++++-
T Consensus 66 tD-------~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~ 103 (423)
T cd05297 66 TD-------RREALDGADFVINTIQVGGHEYTETDFEIPEKYGYY 103 (423)
T ss_pred CC-------HHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCee
Confidence 21 13457899999998743 22333223466777664
No 394
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.02 E-value=3 Score=40.56 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=47.1
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
+++|+|.| +|.||+.+++.|...|.. +++++.+.... . +...+. .+....+ +++....+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~-V~~~~r~~~~~--------------~--~~~~~~-~~~~~~~--~~~~~~~D 63 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYT-VKATVRDPNDP--------------K--KTEHLL-ALDGAKE--RLHLFKAN 63 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCE-EEEEEcCCCch--------------h--hHHHHH-hccCCCC--ceEEEecc
Confidence 57899998 699999999999999874 65555432110 0 000000 0001122 44555666
Q ss_pred CCCCcchHhhhccCcEEEEcc
Q 015243 91 VKDPKFNVEFFKQFNVVLNGL 111 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~ 111 (410)
+.+...-...++++|+||.+.
T Consensus 64 l~~~~~~~~~~~~~d~Vih~A 84 (322)
T PLN02662 64 LLEEGSFDSVVDGCEGVFHTA 84 (322)
T ss_pred ccCcchHHHHHcCCCEEEEeC
Confidence 654433445678889988854
No 395
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.99 E-value=0.59 Score=47.54 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=31.0
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.|.+++|.|||+|.+|..+++.|...|+. +...|+
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence 57889999999999999999999999985 667774
No 396
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.89 E-value=1.5 Score=43.11 Aligned_cols=77 Identities=10% Similarity=0.242 Sum_probs=54.9
Q ss_pred HHhCCcEEEECCc-HHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVGAG-GIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG~G-giG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
.+.+++|.|||.| -+|..++.+|...|. .+++.+..+-
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~---------------------------------------- 194 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST---------------------------------------- 194 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC----------------------------------------
Confidence 4789999999996 999999999999985 4777653210
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~ 137 (410)
...+..+++|+||.++..... +..-..+-+.-+|+.|+.
T Consensus 195 --------~l~e~~~~ADIVIsavg~~~~---v~~~~ik~GaiVIDvgin 233 (301)
T PRK14194 195 --------DAKALCRQADIVVAAVGRPRL---IDADWLKPGAVVIDVGIN 233 (301)
T ss_pred --------CHHHHHhcCCEEEEecCChhc---ccHhhccCCcEEEEeccc
Confidence 023556789999999876542 223335667778888754
No 397
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=87.89 E-value=2.4 Score=48.33 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=55.8
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC-CCCeEEEEcc
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR-PQMSITAHHA 89 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n-p~v~i~~~~~ 89 (410)
.+++|+|||+|.-|...|..|++.|.. ++|+|... .+.=+.-|.-.+.-.+| +++.+.+..+. -++++....
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~-VtVfE~~~----~~GG~l~yGIP~~rlp~-~vi~~~i~~l~~~Gv~f~~n~- 377 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFP-VTVFEAFH----DLGGVLRYGIPEFRLPN-QLIDDVVEKIKLLGGRFVKNF- 377 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCe-EEEEeeCC----CCCceEEccCCCCcChH-HHHHHHHHHHHhhcCeEEEeE-
Confidence 479999999999999999999999975 99998542 22322223333333344 33333333322 134443221
Q ss_pred CCCCCcchHhhhc-cCcEEEEccCC
Q 015243 90 NVKDPKFNVEFFK-QFNVVLNGLDN 113 (410)
Q Consensus 90 ~i~~~~~~~~~~~-~~DvVi~a~Dn 113 (410)
.+......+++.+ +||.||.|+..
T Consensus 378 ~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 378 VVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EeccEEeHHHhccccCCEEEEeCCC
Confidence 1111111234444 69999998865
No 398
>PLN02503 fatty acyl-CoA reductase 2
Probab=87.83 E-value=6.7 Score=42.43 Aligned_cols=133 Identities=16% Similarity=0.183 Sum_probs=75.8
Q ss_pred CHHHHHHHhCCcEEEECC-cHHHHHHHHHHHHhC--CCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhC
Q 015243 3 SERQLEAIKGAKVLMVGA-GGIGCELLKTLALSG--FQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFR 79 (410)
Q Consensus 3 g~e~q~~L~~~~VlvvG~-GgiG~ev~knLa~~G--v~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~n 79 (410)
|..-++-+++++|+|-|+ |-+|..+++.|.+.+ +++|.++....=..+-..|.. ..-....+-+.+++.+
T Consensus 110 ~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~-------~~l~~~~lf~~l~~~~ 182 (605)
T PLN02503 110 GIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK-------NEVIDAELFKCLQETH 182 (605)
T ss_pred CcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH-------HHHhhhhhHHHHHHhc
Confidence 344577889999999996 899999999999864 678887643211111111100 0000001223444444
Q ss_pred CC-------CeEEEEccCCCCCcc------hHhhhccCcEEEEccCC------hH--------HHHHHHHHHHHCC--Cc
Q 015243 80 PQ-------MSITAHHANVKDPKF------NVEFFKQFNVVLNGLDN------LD--------ARRHVNRLCLAAD--VP 130 (410)
Q Consensus 80 p~-------v~i~~~~~~i~~~~~------~~~~~~~~DvVi~a~Dn------~~--------~r~~i~~~c~~~~--~p 130 (410)
|. -+++.+.+++++..+ ...+.++.|+||.+... .+ .-..+-++|.+.+ ..
T Consensus 183 g~~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~ 262 (605)
T PLN02503 183 GKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKL 262 (605)
T ss_pred CccccccccccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCe
Confidence 42 368888888876532 12345679999996432 11 1234455665543 46
Q ss_pred EEEecccCccce
Q 015243 131 LVESGTTGFLGQ 142 (410)
Q Consensus 131 ~i~~g~~G~~G~ 142 (410)
++..++...+|.
T Consensus 263 fV~vSTayVyG~ 274 (605)
T PLN02503 263 FLQVSTAYVNGQ 274 (605)
T ss_pred EEEccCceeecC
Confidence 777776544443
No 399
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=87.75 E-value=4.4 Score=40.01 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=24.9
Q ss_pred cEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 14 ~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+|+|.| +|.||+.+++.|...|...+..+|
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~ 32 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVD 32 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEec
Confidence 789998 599999999999999876555555
No 400
>PRK06523 short chain dehydrogenase; Provisional
Probab=87.71 E-value=1.8 Score=40.72 Aligned_cols=37 Identities=22% Similarity=0.414 Sum_probs=31.4
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
++.+++|+|.| .||||.++++.|+..|.. +.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGAR-VVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCE-EEEEeCCh
Confidence 46788999998 589999999999999974 88887653
No 401
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=87.67 E-value=5.6 Score=39.04 Aligned_cols=114 Identities=18% Similarity=0.307 Sum_probs=62.2
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCC------CCCCCchHHHHHHHHHHhhCCCCeEE
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFR------QSHVGQSKAKVARDAVLKFRPQMSIT 85 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~------~~diG~~Ka~~a~~~l~~~np~v~i~ 85 (410)
++|||.| +|=|||.+++.|...|.. +.++|+ .+|=+|..+-+ ..|+.- .+.+.+.+.+.+|+.-++
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~-vvV~DN----L~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~idaViH 73 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHE-VVVLDN----LSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKIDAVVH 73 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCe-EEEEec----CCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCCCEEEE
Confidence 4788885 999999999999999976 777772 22222222211 223322 233455555555554333
Q ss_pred EEcc-CCCCC-cchHhhhccCcEEEEccCChHHHHHHHHHHHHCCC-cEEEecccCccce
Q 015243 86 AHHA-NVKDP-KFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADV-PLVESGTTGFLGQ 142 (410)
Q Consensus 86 ~~~~-~i~~~-~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~-p~i~~g~~G~~G~ 142 (410)
.--. .+.|. .....++.. |.-.-.-+-+.|+++++ .+|.+++...+|.
T Consensus 74 FAa~~~VgESv~~Pl~Yy~N---------Nv~gTl~Ll~am~~~gv~~~vFSStAavYG~ 124 (329)
T COG1087 74 FAASISVGESVQNPLKYYDN---------NVVGTLNLIEAMLQTGVKKFIFSSTAAVYGE 124 (329)
T ss_pred CccccccchhhhCHHHHHhh---------chHhHHHHHHHHHHhCCCEEEEecchhhcCC
Confidence 2111 11111 112233332 33334455566777776 6888888777775
No 402
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.67 E-value=2.5 Score=43.71 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=28.2
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+..|+|+|.|+.|-.+++.|...|. +++..|.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~ 37 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDS 37 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeC
Confidence 4579999999999999999999997 5888884
No 403
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=87.63 E-value=0.71 Score=47.30 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=31.8
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
+.+++|+|+|+|.+|..+++.+...|.. ++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~-ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGAR-VIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCE-EEEEeCCh
Confidence 5788999999999999999999999984 88888554
No 404
>PRK06487 glycerate dehydrogenase; Provisional
Probab=87.52 E-value=0.67 Score=45.89 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=56.6
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.|.+++|.|+|.|.||.++++.|...|+. +..+|... ..... .
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~-V~~~~~~~------------~~~~~-------------------~----- 187 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMR-VLIGQLPG------------RPARP-------------------D----- 187 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCE-EEEECCCC------------Ccccc-------------------c-----
Confidence 58999999999999999999999877874 65555310 00000 0
Q ss_pred cCCCCCcchHhhhccCcEEEEccC-ChHHHHHHHHHHHHC---CCcEEEec
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLAA---DVPLVESG 135 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~~---~~p~i~~g 135 (410)
.. .-+++++++|+|+.++. +.+++..+++..... +--+|+.+
T Consensus 188 -~~----~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~a 233 (317)
T PRK06487 188 -RL----PLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTA 233 (317)
T ss_pred -cc----CHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECC
Confidence 00 13477889999988664 567777777765543 33455654
No 405
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=87.46 E-value=3.3 Score=41.44 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=28.3
Q ss_pred hhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243 99 EFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (410)
Q Consensus 99 ~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~ 137 (410)
+.+.++|+|++|+.....+. ....+.++|+++|+.+..
T Consensus 74 el~~~vDVVIdaT~~~~~~e-~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 74 DLLEKADIVVDATPGGVGAK-NKELYEKAGVKAIFQGGE 111 (341)
T ss_pred HhhccCCEEEECCCchhhHH-HHHHHHHCCCEEEEcCCC
Confidence 45578999999997655444 445777889999987753
No 406
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=87.42 E-value=1.9 Score=41.78 Aligned_cols=98 Identities=18% Similarity=0.348 Sum_probs=55.3
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
+||+|+| .|-+|..+.+.|...|.. +..++.. .-|+. ..+.+.+.+.+..|++-|..- .+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~-v~~~~r~--------------~~dl~--d~~~~~~~~~~~~pd~Vin~a--a~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYE-VIATSRS--------------DLDLT--DPEAVAKLLEAFKPDVVINCA--AY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEE-EEEESTT--------------CS-TT--SHHHHHHHHHHH--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCE-EEEeCch--------------hcCCC--CHHHHHHHHHHhCCCeEeccc--ee
Confidence 4899999 599999999999987754 3333333 11222 245677777787787554432 11
Q ss_pred CCCcc---h-HhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEecccC
Q 015243 92 KDPKF---N-VEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTG 138 (410)
Q Consensus 92 ~~~~~---~-~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~G 138 (410)
+.... + +..+ .-|..+-..+.+.|...+.++|..++..
T Consensus 62 ~~~~~ce~~p~~a~---------~iN~~~~~~la~~~~~~~~~li~~STd~ 103 (286)
T PF04321_consen 62 TNVDACEKNPEEAY---------AINVDATKNLAEACKERGARLIHISTDY 103 (286)
T ss_dssp --HHHHHHSHHHHH---------HHHTHHHHHHHHHHHHCT-EEEEEEEGG
T ss_pred ecHHhhhhChhhhH---------HHhhHHHHHHHHHHHHcCCcEEEeeccE
Confidence 10000 0 0000 0133444677889999999999887754
No 407
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=87.41 E-value=0.81 Score=47.28 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=28.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+|+|||+|-.|||+|..|++.|+. ++|+++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~-V~LiE~r 32 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVP-VILYEMR 32 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCc-EEEEecc
Confidence 3799999999999999999999975 8888854
No 408
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=87.41 E-value=3.1 Score=41.47 Aligned_cols=90 Identities=17% Similarity=0.322 Sum_probs=55.3
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCc--EEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQD--IHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~--i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
.||+|+| .|.+|.++++.|...|... +..+ .+..+.|+.=. ++ ..++...
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l---------------~s~~~~g~~l~---------~~-g~~i~v~-- 54 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLL---------------ASARSAGKELS---------FK-GKELKVE-- 54 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEE---------------EccccCCCeee---------eC-CceeEEe--
Confidence 5899999 6889999999999876553 3332 12223333210 11 1122211
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
++. ..-|+++|+||.|+....++.+..+. ...+..+|+.+
T Consensus 55 d~~-----~~~~~~vDvVf~A~g~g~s~~~~~~~-~~~G~~VIDlS 94 (334)
T PRK14874 55 DLT-----TFDFSGVDIALFSAGGSVSKKYAPKA-AAAGAVVIDNS 94 (334)
T ss_pred eCC-----HHHHcCCCEEEECCChHHHHHHHHHH-HhCCCEEEECC
Confidence 221 12347899999999888777776665 45677888754
No 409
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=87.38 E-value=3.3 Score=41.57 Aligned_cols=91 Identities=16% Similarity=0.387 Sum_probs=56.6
Q ss_pred CCcEEEECC-cHHHHHHHHHHHH-hCC--CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 12 GAKVLMVGA-GGIGCELLKTLAL-SGF--QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 12 ~~~VlvvG~-GgiG~ev~knLa~-~Gv--~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
+.+|.|||+ |.+|.|+++.|.. ..+ +++.++.. ....|+.= .+. ..++.++..
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS---------------~~saGk~~------~~~--~~~l~v~~~ 61 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSS---------------KRSAGKTV------QFK--GREIIIQEA 61 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEEC---------------cccCCCCe------eeC--CcceEEEeC
Confidence 468999996 8999999999994 554 45665542 23344421 000 011222221
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEec
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESG 135 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g 135 (410)
+.+-++++|+|+.|+++-.++.+... +.+.+.++||.+
T Consensus 62 ---------~~~~~~~~Divf~a~~~~~s~~~~~~-~~~~G~~VID~S 99 (347)
T PRK06728 62 ---------KINSFEGVDIAFFSAGGEVSRQFVNQ-AVSSGAIVIDNT 99 (347)
T ss_pred ---------CHHHhcCCCEEEECCChHHHHHHHHH-HHHCCCEEEECc
Confidence 12234789999999987766666555 456789999854
No 410
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=87.37 E-value=3.1 Score=40.03 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.2
Q ss_pred CcEEEECCcHHHHHHHHHHHHh
Q 015243 13 AKVLMVGAGGIGCELLKTLALS 34 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~ 34 (410)
.||.|+|||.+|..+++.|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 4899999999999999999875
No 411
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=87.35 E-value=0.76 Score=48.19 Aligned_cols=33 Identities=33% Similarity=0.568 Sum_probs=29.9
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+.+++++|+|+||+|..+++.|+..|. +++++|
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~ 362 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFN 362 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 567899999999999999999999998 788876
No 412
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.34 E-value=0.81 Score=45.24 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=27.0
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+|.|+|+|++|+.++..|+..|. ++++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 69999999999999999999984 47787754
No 413
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.33 E-value=1.6 Score=45.29 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=32.9
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE 48 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve 48 (410)
+.+++|+|+|.|..|..+++.|.+.| ..+++.|...-.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence 44899999999999999999999999 559998865544
No 414
>PRK08264 short chain dehydrogenase; Validated
Probab=87.32 E-value=0.87 Score=42.16 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=31.3
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+.+++|+|.| .|++|.++++.|+..|..++.+++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 5678999998 69999999999999998778888754
No 415
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.25 E-value=0.79 Score=44.58 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=27.0
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+|+|+|+|++|+.++..|+..|. .+++++.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 379999999999999999999985 4888763
No 416
>PRK06436 glycerate dehydrogenase; Provisional
Probab=87.25 E-value=0.75 Score=45.29 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=30.2
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.|.+++|.|+|.|.+|.++++.|...|+ ++..+|.
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r 153 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTR 153 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 5889999999999999999998877787 4777774
No 417
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=87.25 E-value=2.8 Score=39.46 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=25.9
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++++|.| .||||.++++.|+..|. ++.++|.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~-~V~~~~r 32 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA-RVVISSR 32 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeC
Confidence 3789998 58999999999999997 4777763
No 418
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.25 E-value=0.67 Score=48.49 Aligned_cols=40 Identities=28% Similarity=0.364 Sum_probs=34.5
Q ss_pred HHHHHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 5 RQLEAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 5 e~q~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+....+..++|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 44455778999999999999999999999998 79998854
No 419
>PRK06270 homoserine dehydrogenase; Provisional
Probab=87.23 E-value=5.2 Score=40.01 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.4
Q ss_pred CCcEEEECCcHHHHHHHHHHHHh
Q 015243 12 GAKVLMVGAGGIGCELLKTLALS 34 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~ 34 (410)
..+|.|+|+|.+|..+++.|...
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHh
Confidence 35899999999999999999765
No 420
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.21 E-value=2.5 Score=38.92 Aligned_cols=29 Identities=31% Similarity=0.462 Sum_probs=24.8
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCc
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQD 38 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~ 38 (410)
+..++|+|.| .|++|.++++.|+..|..-
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v 33 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADV 33 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence 4467899998 6999999999999999853
No 421
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=87.18 E-value=0.82 Score=45.71 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=29.8
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V 47 (410)
.|+|||+|-+|+.+|..|++.|. +++|+|...+
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 5999998654
No 422
>PLN02256 arogenate dehydrogenase
Probab=87.16 E-value=0.8 Score=45.12 Aligned_cols=35 Identities=26% Similarity=0.310 Sum_probs=29.4
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+-+..+|.|||+|.+|..+++.|...|. +++.+|.
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~ 67 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSR 67 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence 4466789999999999999999999885 5777773
No 423
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=87.12 E-value=3 Score=39.38 Aligned_cols=34 Identities=29% Similarity=0.560 Sum_probs=28.1
Q ss_pred HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (410)
Q Consensus 8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li 42 (410)
..|++++++|.| .||||.++++.|+..|.. +.++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~ 38 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFT 38 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEE
Confidence 346788999998 589999999999999985 5554
No 424
>PRK07454 short chain dehydrogenase; Provisional
Probab=87.11 E-value=3.6 Score=38.13 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=26.9
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.++++|.| .|++|..+++.|+..|. ++.++|.
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r 38 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVAR 38 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 45788888 59999999999999997 5888764
No 425
>PRK06128 oxidoreductase; Provisional
Probab=87.09 E-value=3.1 Score=40.36 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=28.7
Q ss_pred HHHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 8 EAIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 8 ~~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
.+|++++++|.| .|+||.++++.|+..|.. +.+++
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~ 86 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGAD-IALNY 86 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEe
Confidence 357788999998 589999999999999974 55543
No 426
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.09 E-value=3.9 Score=44.59 Aligned_cols=34 Identities=32% Similarity=0.503 Sum_probs=30.2
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
..++|+|||+|..|...+..|++.|.. ++|+|..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~-Vtv~e~~ 225 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHD-VTIFDAN 225 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCc-EEEEecC
Confidence 357899999999999999999999975 9999854
No 427
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=87.08 E-value=5.3 Score=38.50 Aligned_cols=29 Identities=38% Similarity=0.689 Sum_probs=24.3
Q ss_pred cEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 14 ~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+|+|.| .|.+|..+++.|...|.. ++++|
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~-V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHE-VVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCe-EEEEe
Confidence 588997 699999999999999875 56665
No 428
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=87.03 E-value=3 Score=42.14 Aligned_cols=104 Identities=19% Similarity=0.207 Sum_probs=58.9
Q ss_pred EEEECCcHHHHHHHHHH--HHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243 15 VLMVGAGGIGCELLKTL--ALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (410)
Q Consensus 15 VlvvG~GgiG~ev~knL--a~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 92 (410)
|+|||+|..|..+|..| +..|. ++.|+|...--.-.-++...|-..+++. ....+....+...|........
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~~~~~~~~~-----~~~~v~~~w~~~~v~~~~~~~~ 75 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWCFWEKDLGP-----LDSLVSHRWSGWRVYFPDGSRI 75 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccccccccccc-----hHHHHheecCceEEEeCCCceE
Confidence 78999999999999999 66664 6999997654422233344455555665 3344444444555554333221
Q ss_pred CCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEe
Q 015243 93 DPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVES 134 (410)
Q Consensus 93 ~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~ 134 (410)
. ..+.. ..++...-..++.+.|...+.-++.+
T Consensus 76 ~--------~~~~Y--~~i~~~~f~~~l~~~~~~~~~~~~~~ 107 (374)
T PF05834_consen 76 L--------IDYPY--CMIDRADFYEFLLERAAAGGVIRLNA 107 (374)
T ss_pred E--------cccce--EEEEHHHHHHHHHHHhhhCCeEEEcc
Confidence 1 11222 23344555556666666555555443
No 429
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=86.94 E-value=2.9 Score=40.30 Aligned_cols=30 Identities=40% Similarity=0.699 Sum_probs=25.2
Q ss_pred EEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 15 VLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 15 VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
|+|.| +|.+|+.+++.|...|...+.++|.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEec
Confidence 57777 6999999999999999766777763
No 430
>PRK06914 short chain dehydrogenase; Provisional
Probab=86.93 E-value=2.4 Score=40.30 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=27.0
Q ss_pred hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
++++++|.| .|++|..+++.|+..|.. +.+++.+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~-V~~~~r~ 36 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYL-VIATMRN 36 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCE-EEEEeCC
Confidence 456788888 689999999999999864 6666543
No 431
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.85 E-value=4.2 Score=32.71 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhhCCCCeEEEE--ccCCCCCc-chHhhhccCcEEEEccCC--hHHHHHHHHHHHHCCCcEEEecccCcc
Q 015243 66 SKAKVARDAVLKFRPQMSITAH--HANVKDPK-FNVEFFKQFNVVLNGLDN--LDARRHVNRLCLAADVPLVESGTTGFL 140 (410)
Q Consensus 66 ~Ka~~a~~~l~~~np~v~i~~~--~~~i~~~~-~~~~~~~~~DvVi~a~Dn--~~~r~~i~~~c~~~~~p~i~~g~~G~~ 140 (410)
......++.+++.+ .+...+ ........ .-+..+++.|+||..+|. ..+...+-+.|.++++|++.+...|..
T Consensus 10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 34455666777754 455556 22222221 134567888999998875 468889999999999999998766643
No 432
>PRK07574 formate dehydrogenase; Provisional
Probab=86.84 E-value=0.8 Score=46.63 Aligned_cols=92 Identities=22% Similarity=0.265 Sum_probs=57.9
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.|.+++|.|||.|.||.++++.|...|+. +..+|.... +.+.. ... .++.+
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~-V~~~dr~~~-------------------~~~~~----~~~----g~~~~- 239 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVK-LHYTDRHRL-------------------PEEVE----QEL----GLTYH- 239 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCE-EEEECCCCC-------------------chhhH----hhc----Cceec-
Confidence 58899999999999999999999988874 667663210 00000 011 11111
Q ss_pred cCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHH---CCCcEEEec
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESG 135 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~---~~~p~i~~g 135 (410)
. ..+++++.+|+|+.++ .+.+++..+++.... .+.-+|+.+
T Consensus 240 ---~---~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 240 ---V---SFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTA 284 (385)
T ss_pred ---C---CHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECC
Confidence 0 1347789999998876 456677777654333 344566654
No 433
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=86.83 E-value=3.3 Score=38.95 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=27.0
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li 42 (410)
+.+++++|.| .|+||.++++.|+..|.. +.++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~-vvi~ 37 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAK-VVIN 37 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEE
Confidence 6788999997 789999999999999965 5454
No 434
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.71 E-value=1.8 Score=42.52 Aligned_cols=77 Identities=10% Similarity=0.237 Sum_probs=54.7
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
.+.+++|+||| .|.+|..++.+|...|. .+++.+..+- +
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~--------------~------------------------- 194 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR--------------D------------------------- 194 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC--------------C-------------------------
Confidence 36889999999 89999999999998885 4676642110 0
Q ss_pred ccCCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~ 137 (410)
..+..+++|+||.|+.+.. .+.....+-+.-+|+.|+.
T Consensus 195 ---------l~e~~~~ADIVIsavg~~~---~v~~~~lk~GavVIDvGin 232 (296)
T PRK14188 195 ---------LPAVCRRADILVAAVGRPE---MVKGDWIKPGATVIDVGIN 232 (296)
T ss_pred ---------HHHHHhcCCEEEEecCChh---hcchheecCCCEEEEcCCc
Confidence 1345678999999988755 3444445567778888764
No 435
>PRK07904 short chain dehydrogenase; Provisional
Probab=86.65 E-value=4.7 Score=38.05 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=25.9
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.++|+|.| .||+|.++++.|+..|--++.+++.
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r 41 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAAL 41 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeC
Confidence 34677777 7899999999999986446777763
No 436
>PRK08589 short chain dehydrogenase; Validated
Probab=86.63 E-value=2.2 Score=40.72 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=28.4
Q ss_pred HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEe
Q 015243 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD 43 (410)
++.+++++|.|+ ||||.++++.|+..|. ++.++|
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~ 37 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD 37 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 467789999985 8999999999999996 466665
No 437
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=86.58 E-value=2.5 Score=41.38 Aligned_cols=31 Identities=19% Similarity=0.621 Sum_probs=28.8
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
.++|-.+|.|-.|+.+++||..+|.+ +++.|
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~d 65 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYD 65 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCE-EEEEe
Confidence 68899999999999999999999987 88877
No 438
>PLN00106 malate dehydrogenase
Probab=86.52 E-value=1.1 Score=44.63 Aligned_cols=35 Identities=34% Similarity=0.659 Sum_probs=30.8
Q ss_pred CCcEEEECC-cHHHHHHHHHHHHhCC-CcEEEEeCCc
Q 015243 12 GAKVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDT 46 (410)
Q Consensus 12 ~~~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD~D~ 46 (410)
..||.|+|+ |.+|+.++..|+..|. +.+.|+|-+.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 568999999 9999999999999887 5799999644
No 439
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=86.52 E-value=12 Score=36.50 Aligned_cols=30 Identities=30% Similarity=0.397 Sum_probs=24.2
Q ss_pred cEEEECC-cHHHHHHHHHHHHhCC-CcEEEEe
Q 015243 14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIID 43 (410)
Q Consensus 14 ~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD 43 (410)
+|+|.|+ |.+|..+++.|...|- .++..+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 5889985 9999999999999984 3566654
No 440
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=86.46 E-value=0.73 Score=45.62 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=28.0
Q ss_pred HhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
|++++|.|||+|.+|..++++|..+|+. +++.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence 5689999999999999999999999974 44433
No 441
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=86.44 E-value=0.96 Score=45.92 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=29.7
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
++|+|||+|-+|+.+|..|++.|. +++|+|.+.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 379999999999999999999996 599999874
No 442
>PRK06057 short chain dehydrogenase; Provisional
Probab=86.42 E-value=0.85 Score=42.88 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=30.5
Q ss_pred HHhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 9 AIKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 9 ~L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+|.+++|+|+|+ |+||..+++.|+..|. ++.++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 477899999996 9999999999999996 47777644
No 443
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.39 E-value=3.1 Score=39.42 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=28.2
Q ss_pred HhCCcEEEECC---cHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVGA---GGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG~---GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+.++.++|.|+ +|||.++++.|+..|. ++.+++
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~ 40 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTY 40 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEec
Confidence 56789999997 5999999999999997 477765
No 444
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=86.37 E-value=1.6 Score=41.03 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=30.3
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
+.+++++|.| .|++|.++++.|+..|.. +.++|.+.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~-v~~~~r~~ 40 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGAR-VVIADIKP 40 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCE-EEEEcCCH
Confidence 6678899998 599999999999999974 77777554
No 445
>PRK05650 short chain dehydrogenase; Provisional
Probab=86.34 E-value=3.9 Score=38.76 Aligned_cols=31 Identities=26% Similarity=0.595 Sum_probs=25.4
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++|+|.| .|+||.++++.|+..|.. +.++|.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~-V~~~~r 32 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWR-LALADV 32 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence 3688887 689999999999999975 666653
No 446
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=86.31 E-value=9.6 Score=37.12 Aligned_cols=98 Identities=21% Similarity=0.379 Sum_probs=59.7
Q ss_pred cEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc-cCC
Q 015243 14 KVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH-ANV 91 (410)
Q Consensus 14 ~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~-~~i 91 (410)
+|+|.| .|-+|.++.+.|. |-..+.-+|...++..| .+.+++.+++..|++=|.+-. ..+
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Ditd----------------~~~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAELDITD----------------PDAVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCccccccC----------------hHHHHHHHHhhCCCEEEECcccccc
Confidence 589998 5779999999988 44456555544433322 355788889999988765421 111
Q ss_pred CCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEEeccc
Q 015243 92 KDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTT 137 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~~g~~ 137 (410)
...+...+ ...-| |..+-..+.+.|.+.+.++|..+|.
T Consensus 64 D~aE~~~e----~A~~v----Na~~~~~lA~aa~~~ga~lVhiSTD 101 (281)
T COG1091 64 DKAESEPE----LAFAV----NATGAENLARAAAEVGARLVHISTD 101 (281)
T ss_pred ccccCCHH----HHHHh----HHHHHHHHHHHHHHhCCeEEEeecc
Confidence 11110000 00011 2234566778899999999988754
No 447
>PRK08862 short chain dehydrogenase; Provisional
Probab=86.30 E-value=3.3 Score=38.57 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=27.4
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+.+++++|.| .+|+|.++++.|+..|.. +.+++
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~ 36 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCD 36 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEc
Confidence 5678899998 568999999999999975 66655
No 448
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=86.25 E-value=5.7 Score=41.43 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=30.1
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
..++|+|||+|..|...+..|++.|.. ++++|..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~-V~vie~~ 175 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHK-VTVFERA 175 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 357899999999999999999999975 9998854
No 449
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=86.24 E-value=3.8 Score=47.00 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.0
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+++|+|||+|..|...|..|++.|. +++|+|..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~ 462 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGV-DVTVYEAL 462 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecC
Confidence 5789999999999999999999997 59999864
No 450
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=86.23 E-value=2 Score=40.02 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.9
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
+.+++++|.|+ |++|..+++.|+..|. ++.++|.+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence 67789999985 7899999999999996 477777654
No 451
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=86.21 E-value=0.91 Score=40.47 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=28.7
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V 47 (410)
.|..++++|+|.|-+|.-+|+.|..+|. +++++|-|.+
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi 57 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPI 57 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChH
Confidence 4678899999999999999999999995 5899987663
No 452
>PRK05884 short chain dehydrogenase; Provisional
Probab=86.21 E-value=2.5 Score=39.14 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=25.9
Q ss_pred cEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 14 KVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 14 ~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+++|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~ 33 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGAR 33 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 6889985 8999999999999997 57777643
No 453
>PRK08267 short chain dehydrogenase; Provisional
Probab=86.20 E-value=2.8 Score=39.36 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=25.7
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r 33 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDI 33 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence 5689998 68999999999999996 4666653
No 454
>PRK07791 short chain dehydrogenase; Provisional
Probab=86.15 E-value=2.5 Score=40.81 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=28.9
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
.+.+++++|.| .||||.++++.|+..|.. +.++|.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~-vii~~~ 38 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGAR-VVVNDI 38 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEeeC
Confidence 46778899987 679999999999999974 666663
No 455
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=86.12 E-value=0.93 Score=44.21 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.5
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
..|+|||+|..|+.+|..|++.|+. ++|+|...
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhcc
Confidence 3699999999999999999999987 88888654
No 456
>PRK00811 spermidine synthase; Provisional
Probab=86.12 E-value=2.3 Score=41.32 Aligned_cols=35 Identities=26% Similarity=0.572 Sum_probs=24.8
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
...+||++|+|+ |.-....|...++.+++++|.|.
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~ 110 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE 110 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence 357899999975 44444444445899999998664
No 457
>PRK12831 putative oxidoreductase; Provisional
Probab=86.12 E-value=3.7 Score=42.81 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=30.0
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
..++|+|||+|..|...+..|++.|.. ++|+|..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~-V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYD-VTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCe-EEEEecC
Confidence 467899999999999999999999975 8888853
No 458
>PRK06841 short chain dehydrogenase; Provisional
Probab=86.11 E-value=1 Score=42.10 Aligned_cols=34 Identities=26% Similarity=0.549 Sum_probs=29.1
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+++|+|.| .|+||.++++.|+..|. ++.+++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r 47 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR 47 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 5688999999 49999999999999997 4777764
No 459
>PLN00016 RNA-binding protein; Provisional
Probab=86.10 E-value=3.6 Score=41.43 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=63.9
Q ss_pred HHHhCCcEEEE----C-CcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCC
Q 015243 8 EAIKGAKVLMV----G-AGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQM 82 (410)
Q Consensus 8 ~~L~~~~Vlvv----G-~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v 82 (410)
.....++|+|+ | .|-+|..+++.|...|. ++++++.+.-....+. .... .-. ..+.. +.
T Consensus 48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~------~~~~-----~~~-~~l~~--~~- 111 (378)
T PLN00016 48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMK------KEPF-----SRF-SELSS--AG- 111 (378)
T ss_pred cccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhc------cCch-----hhh-hHhhh--cC-
Confidence 34566889999 7 58899999999999995 5777775432110000 0000 000 01111 12
Q ss_pred eEEEEccCCCCCcchHhhh--ccCcEEEEccC-ChHHHHHHHHHHHHCCC-cEEEecccCccc
Q 015243 83 SITAHHANVKDPKFNVEFF--KQFNVVLNGLD-NLDARRHVNRLCLAADV-PLVESGTTGFLG 141 (410)
Q Consensus 83 ~i~~~~~~i~~~~~~~~~~--~~~DvVi~a~D-n~~~r~~i~~~c~~~~~-p~i~~g~~G~~G 141 (410)
++....++.+ ....+ .++|+||.+.. +......+-+.|.+.++ .+|..++.|.+|
T Consensus 112 -v~~v~~D~~d---~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg 170 (378)
T PLN00016 112 -VKTVWGDPAD---VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYK 170 (378)
T ss_pred -ceEEEecHHH---HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcC
Confidence 3333333321 11222 46899998643 33444556677887877 588887776655
No 460
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=86.09 E-value=0.92 Score=44.80 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=30.7
Q ss_pred HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
..|.+++|.|||.|.||.++++.+...|. ++..+|.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECC
Confidence 46899999999999999999999987776 4666664
No 461
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=86.04 E-value=1 Score=44.55 Aligned_cols=33 Identities=36% Similarity=0.626 Sum_probs=29.2
Q ss_pred cEEEECC-cHHHHHHHHHHHHhCC-CcEEEEeCCc
Q 015243 14 KVLMVGA-GGIGCELLKTLALSGF-QDIHIIDMDT 46 (410)
Q Consensus 14 ~VlvvG~-GgiG~ev~knLa~~Gv-~~i~liD~D~ 46 (410)
||.|+|+ |.+|+.++-.|+..|+ ..|.|+|-+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999987 5799999643
No 462
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=86.00 E-value=3.9 Score=39.18 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=44.2
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCC-CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGF-QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv-~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
.+.+|+.+|||+ |..........|. ++++-+|.. ..+.+.+++...+.... +++....
T Consensus 77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s-------------------~~~l~~A~~~~~~~g~~-~v~~~~~ 135 (272)
T PRK11873 77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMT-------------------PEMLAKARANARKAGYT-NVEFRLG 135 (272)
T ss_pred CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCC-------------------HHHHHHHHHHHHHcCCC-CEEEEEc
Confidence 467999999998 8766544455565 468888743 23445555555444321 4445545
Q ss_pred CCCCCcchHhhhccCcEEEEc
Q 015243 90 NVKDPKFNVEFFKQFNVVLNG 110 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a 110 (410)
++.+..+. -..||+|+..
T Consensus 136 d~~~l~~~---~~~fD~Vi~~ 153 (272)
T PRK11873 136 EIEALPVA---DNSVDVIISN 153 (272)
T ss_pred chhhCCCC---CCceeEEEEc
Confidence 54322111 1368999864
No 463
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=85.96 E-value=4.6 Score=40.18 Aligned_cols=108 Identities=17% Similarity=0.234 Sum_probs=68.1
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCC--cEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQ--DIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~--~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
.+|.|+| -|.+|..+++.|....+- .+.+ +++....|+.=.+.... ..
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~---------------~AS~rSaG~~~~~f~~~--------------~~ 52 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVL---------------LASARSAGKKYIEFGGK--------------SI 52 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEE---------------EecccccCCccccccCc--------------cc
Confidence 5899998 588999999999976543 2333 45666666631111100 01
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHHHHCCCcEEE-ecccCccceEEEEeCCC
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVE-SGTTGFLGQVTVHVKGK 150 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c~~~~~p~i~-~g~~G~~G~v~~~~~~~ 150 (410)
.+.+...+..-++++|+|+.|.....+ ..+...+.+.|.++|+ ++.+-+.-.+-+++|..
T Consensus 53 ~v~~~~~~~~~~~~~Divf~~ag~~~s-~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeV 113 (334)
T COG0136 53 GVPEDAADEFVFSDVDIVFFAAGGSVS-KEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEV 113 (334)
T ss_pred cCccccccccccccCCEEEEeCchHHH-HHHHHHHHHcCCEEEeCCcccccCCCCCEecCCc
Confidence 112211233446799999999865444 5556677788999997 45556666777777654
No 464
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=85.86 E-value=0.7 Score=42.06 Aligned_cols=87 Identities=25% Similarity=0.258 Sum_probs=47.4
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 92 (410)
++|.|+|+|=+|..+|-.|+..|.. ++-+|.|.-....|++-.+.. .+-|. .+.+++.++. . +.....
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~-V~g~D~~~~~v~~l~~g~~p~-~E~~l--~~ll~~~~~~--~--~l~~t~---- 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQ-VIGVDIDEEKVEALNNGELPI-YEPGL--DELLKENVSA--G--RLRATT---- 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSE-EEEE-S-HHHHHHHHTTSSSS--CTTH--HHHHHHHHHT--T--SEEEES----
T ss_pred CEEEEECCCcchHHHHHHHHhCCCE-EEEEeCChHHHHHHhhccccc-cccch--hhhhcccccc--c--cchhhh----
Confidence 5899999999999999999999954 888898887666676554321 23332 1233333321 1 222221
Q ss_pred CCcchHhhhccCcEEEEccCCh
Q 015243 93 DPKFNVEFFKQFNVVLNGLDNL 114 (410)
Q Consensus 93 ~~~~~~~~~~~~DvVi~a~Dn~ 114 (410)
...+-.+++|+++.|+..+
T Consensus 69 ---~~~~ai~~adv~~I~VpTP 87 (185)
T PF03721_consen 69 ---DIEEAIKDADVVFICVPTP 87 (185)
T ss_dssp ---EHHHHHHH-SEEEE----E
T ss_pred ---hhhhhhhccceEEEecCCC
Confidence 1123368899999997543
No 465
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.77 E-value=4.9 Score=37.44 Aligned_cols=31 Identities=39% Similarity=0.652 Sum_probs=25.7
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
++.++|.| .|++|.++++.|+..|. ++.++|
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~ 33 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF-DLAIND 33 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 45688887 69999999999999997 466665
No 466
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=85.72 E-value=1 Score=45.99 Aligned_cols=31 Identities=32% Similarity=0.559 Sum_probs=28.4
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
+|+|||+|..|+.++..|++.|+. +.|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence 799999999999999999999986 8888854
No 467
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=85.70 E-value=3.3 Score=38.89 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=27.3
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
.|.++.++|.| .|+||.++++.|+..|.. +.++|
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~-vv~~~ 41 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCD-IVGIN 41 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEec
Confidence 36678899998 679999999999999965 55544
No 468
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.68 E-value=1.1 Score=44.65 Aligned_cols=33 Identities=36% Similarity=0.621 Sum_probs=29.0
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCCCc------EEEEeCC
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGFQD------IHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv~~------i~liD~D 45 (410)
.||+|+|+ |.+|+.++..|+..|+-. +.|+|-+
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999999 999999999999988754 9999864
No 469
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=85.67 E-value=1.3 Score=42.60 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=57.1
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEE---EEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIH---IIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~---liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
..||.|||||+||..+++.|..-+...+. +.|.+.-...++ .+..++-.--+.+....|++-|++-.
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~DlVVE~A~ 71 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL----------AGRVALLDGLPGLLAWRPDLVVEAAG 71 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh----------hccCcccCCHHHHhhcCCCEEEECCC
Confidence 46899999999999999998754433232 333222000011 01111111012222344665555432
Q ss_pred cCCCCCcchHhhhc-cCcEEEEc---cCChHHHHHHHHHHHHCCC-cEEEec
Q 015243 89 ANVKDPKFNVEFFK-QFNVVLNG---LDNLDARRHVNRLCLAADV-PLVESG 135 (410)
Q Consensus 89 ~~i~~~~~~~~~~~-~~DvVi~a---~Dn~~~r~~i~~~c~~~~~-p~i~~g 135 (410)
...- ..+...+++ +.|+++.. +-+...+..+.+.|++.+. -++-+|
T Consensus 72 ~~av-~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 72 QQAI-AEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred HHHH-HHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeCh
Confidence 2221 123344555 67777764 4455666777777777654 333344
No 470
>PRK09135 pteridine reductase; Provisional
Probab=85.65 E-value=3.7 Score=37.96 Aligned_cols=32 Identities=28% Similarity=0.497 Sum_probs=26.5
Q ss_pred hCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 11 KGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 11 ~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
..++|+|.| .|++|..+++.|+..|.. +.++|
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~-v~~~~ 37 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYR-VAIHY 37 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEc
Confidence 457899998 699999999999999974 66655
No 471
>PRK12937 short chain dehydrogenase; Provisional
Probab=85.65 E-value=4.1 Score=37.65 Aligned_cols=32 Identities=25% Similarity=0.583 Sum_probs=26.6
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li 42 (410)
+.+++++|.| .|+||..+++.|+..|.. +.++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~ 35 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVN 35 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEe
Confidence 4678899998 599999999999999985 4444
No 472
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=85.58 E-value=1 Score=44.82 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=30.4
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
.|.+++|.|||+|.||+.+++.|...|+. +...|
T Consensus 139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d 172 (324)
T COG0111 139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYD 172 (324)
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEEC
Confidence 57899999999999999999999999987 66666
No 473
>PRK09291 short chain dehydrogenase; Provisional
Probab=85.55 E-value=4.7 Score=37.63 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.0
Q ss_pred CCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 12 GAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 12 ~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
+++|+|.| .|++|..+++.|+..|.. +.+++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~ 33 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHN-VIAGV 33 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEe
Confidence 46799998 589999999999999965 55544
No 474
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=85.54 E-value=5.7 Score=38.35 Aligned_cols=88 Identities=23% Similarity=0.286 Sum_probs=53.1
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCC---CcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEcc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGF---QDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHA 89 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv---~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 89 (410)
.+|.++|+|.+|..++.-|...|. .+|.+.|.+. .|. +.+....+.. +
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~-------------------e~~----~~l~~~~g~~-~----- 52 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSE-------------------EKR----AALAAEYGVV-T----- 52 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCH-------------------HHH----HHHHHHcCCc-c-----
Confidence 579999999999999999999994 4677665221 111 1333333322 1
Q ss_pred CCCCCcchHhhhccCcEEEEccCChHHHHHHHHHH-HHCCCcEEE
Q 015243 90 NVKDPKFNVEFFKQFNVVLNGLDNLDARRHVNRLC-LAADVPLVE 133 (410)
Q Consensus 90 ~i~~~~~~~~~~~~~DvVi~a~Dn~~~r~~i~~~c-~~~~~p~i~ 133 (410)
+ ..+.......|+|+.|+--......+.++- ...++.+|.
T Consensus 53 --~--~~~~~~~~~advv~LavKPq~~~~vl~~l~~~~~~~lvIS 93 (266)
T COG0345 53 --T--TDNQEAVEEADVVFLAVKPQDLEEVLSKLKPLTKDKLVIS 93 (266)
T ss_pred --c--CcHHHHHhhCCEEEEEeChHhHHHHHHHhhcccCCCEEEE
Confidence 1 123467788999999986433333333332 123444554
No 475
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.51 E-value=1.1 Score=44.30 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=27.8
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.+|.|+|+|.+|+.++..|+..|.. ++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~-V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVP-VRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCe-EEEEeCC
Confidence 5899999999999999999999854 7887753
No 476
>PRK06932 glycerate dehydrogenase; Provisional
Probab=85.42 E-value=0.94 Score=44.80 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=56.5
Q ss_pred HHHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEE
Q 015243 8 EAIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAH 87 (410)
Q Consensus 8 ~~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 87 (410)
..|.+++|.|||.|.||.++++.+...|+. +..+|.. ...+.. .
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~~~-------------~~~~~~-----------------~----- 186 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAEHK-------------GASVCR-----------------E----- 186 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEECCC-------------cccccc-----------------c-----
Confidence 368899999999999999999999888874 5554421 000000 0
Q ss_pred ccCCCCCcchHhhhccCcEEEEccC-ChHHHHHHHHHHHHC---CCcEEEec
Q 015243 88 HANVKDPKFNVEFFKQFNVVLNGLD-NLDARRHVNRLCLAA---DVPLVESG 135 (410)
Q Consensus 88 ~~~i~~~~~~~~~~~~~DvVi~a~D-n~~~r~~i~~~c~~~---~~p~i~~g 135 (410)
... .-+++++++|+|+.++. +.+++..+++..... +.-+|+.+
T Consensus 187 --~~~---~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 187 --GYT---PFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred --ccC---CHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence 000 13577889999988664 567777777755443 33456654
No 477
>PLN02740 Alcohol dehydrogenase-like
Probab=85.42 E-value=6.1 Score=39.76 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=29.1
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
+.+|+|+|+|++|..++..+...|+.+++.+|.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 568999999999999999888999888888864
No 478
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=85.35 E-value=4.3 Score=37.80 Aligned_cols=31 Identities=35% Similarity=0.624 Sum_probs=25.7
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~ 44 (410)
++++|.| .|+||..+++.|+..|. ++.+++.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r 32 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADL 32 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 3688888 68999999999999997 4777663
No 479
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=85.32 E-value=4.6 Score=37.18 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=26.3
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEE
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHII 42 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~li 42 (410)
+.+++|+|.| .|++|.++++.|+..|.. +.++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~ 35 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVIN 35 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence 4568899998 689999999999999976 4343
No 480
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=85.32 E-value=5.1 Score=32.24 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=49.1
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANV 91 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i 91 (410)
+.+|+-+||| .|......+.+..-.+++-+|.+. .-.+.+++.+.+....-+|+.+..++
T Consensus 2 ~~~vLDlGcG-~G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCG-TGRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTT-TSHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCc-CCHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 6789999997 455444444444556699988432 22445556664545555777777776
Q ss_pred CCCcchHhhhccCcEEEEcc
Q 015243 92 KDPKFNVEFFKQFNVVLNGL 111 (410)
Q Consensus 92 ~~~~~~~~~~~~~DvVi~a~ 111 (410)
....++..+||+|++..
T Consensus 62 ---~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 62 ---EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp ---HGGTTTSSCEEEEEECS
T ss_pred ---ccCcccCCCCCEEEECC
Confidence 12335567899999965
No 481
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=85.26 E-value=4.6 Score=40.09 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=50.5
Q ss_pred CCcEEEECCcHHHHHHHHHHHH-hCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccC
Q 015243 12 GAKVLMVGAGGIGCELLKTLAL-SGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHAN 90 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~-~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~ 90 (410)
..++.|+|+|..|...++.|.. ..+.++.+.| ....|++..++.+++.. +++....
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~-------------------r~~~~~~~~~~~~~~~g--~~v~~~~-- 184 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC-------------------RTPSTREKFALRASDYE--VPVRAAT-- 184 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC-------------------CCHHHHHHHHHHHHhhC--CcEEEeC--
Confidence 4789999999999998888764 2345566654 34567777777776543 3333321
Q ss_pred CCCCcchHhhhccCcEEEEccCC
Q 015243 91 VKDPKFNVEFFKQFNVVLNGLDN 113 (410)
Q Consensus 91 i~~~~~~~~~~~~~DvVi~a~Dn 113 (410)
...+..+++|+|+.|+.+
T Consensus 185 -----~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 185 -----DPREAVEGCDILVTTTPS 202 (325)
T ss_pred -----CHHHHhccCCEEEEecCC
Confidence 134667899999999864
No 482
>PRK09126 hypothetical protein; Provisional
Probab=85.19 E-value=1.1 Score=45.09 Aligned_cols=36 Identities=28% Similarity=0.564 Sum_probs=31.3
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V 47 (410)
++..|+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence 457899999999999999999999986 888886653
No 483
>PRK08303 short chain dehydrogenase; Provisional
Probab=85.19 E-value=4.5 Score=39.58 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=29.4
Q ss_pred HhCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
|.++.++|.|+ +|||.++++.|+..|. ++.+++.+
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~ 41 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS 41 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence 67788999985 6999999999999997 57777754
No 484
>PLN03139 formate dehydrogenase; Provisional
Probab=85.15 E-value=0.92 Score=46.19 Aligned_cols=92 Identities=21% Similarity=0.194 Sum_probs=57.9
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEc
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHH 88 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 88 (410)
.|.+++|.|||+|.+|..+++.|...|+. +..+|..... .+.. .+. .+..
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~~~-------------------~~~~----~~~----g~~~-- 245 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLKMD-------------------PELE----KET----GAKF-- 245 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCCcc-------------------hhhH----hhc----Ccee--
Confidence 58899999999999999999999998875 6666632110 0000 011 1111
Q ss_pred cCCCCCcchHhhhccCcEEEEcc-CChHHHHHHHHHHHH---CCCcEEEec
Q 015243 89 ANVKDPKFNVEFFKQFNVVLNGL-DNLDARRHVNRLCLA---ADVPLVESG 135 (410)
Q Consensus 89 ~~i~~~~~~~~~~~~~DvVi~a~-Dn~~~r~~i~~~c~~---~~~p~i~~g 135 (410)
.. .-++.++++|+|+.++ .+.+++..+++-... .+.-+|+.+
T Consensus 246 --~~---~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 246 --EE---DLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred --cC---CHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECC
Confidence 10 1346788999998865 456677777764433 233455654
No 485
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=85.11 E-value=6.9 Score=37.56 Aligned_cols=94 Identities=14% Similarity=0.292 Sum_probs=54.4
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccCcccCccccCCCCCCCCchHHHHHHHHHHhhCCCCeEEEEccCCC
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLKFRPQMSITAHHANVK 92 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve~sNL~Rq~lf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 92 (410)
++|+|+|+.+=|..+++.|...|..-+..+=.+ -..+.+ . + .+... .+.+..+
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~------~~~~~~-~-----------------~-~g~~~--v~~g~l~ 53 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTS------EGKHLY-P-----------------I-HQALT--VHTGALD 53 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEEccC------Cccccc-c-----------------c-cCCce--EEECCCC
Confidence 479999997789999999999885433322111 011111 0 0 00111 1122222
Q ss_pred CCcchHhhhc--cCcEEEEccCChH--HHHHHHHHHHHCCCcEEEe
Q 015243 93 DPKFNVEFFK--QFNVVLNGLDNLD--ARRHVNRLCLAADVPLVES 134 (410)
Q Consensus 93 ~~~~~~~~~~--~~DvVi~a~Dn~~--~r~~i~~~c~~~~~p~i~~ 134 (410)
... -.+++. +.|+||+|+..+. ....+.+.|...++|++--
T Consensus 54 ~~~-l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 54 PQE-LREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHH-HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 211 123333 4789999987765 4466788999999999854
No 486
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=85.07 E-value=1.1 Score=48.80 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=30.3
Q ss_pred CcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 13 AKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 13 ~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
..|+|||+|-+|+.+|..|++.|.. ++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~~-V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGWQ-VTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCCe-EEEEecCC
Confidence 5899999999999999999999975 99999874
No 487
>PRK06398 aldose dehydrogenase; Validated
Probab=85.04 E-value=3.6 Score=38.87 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=30.7
Q ss_pred HHhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 9 AIKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 9 ~L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
.|++++++|.| .||||.++++.|+..|. ++.++|.+.
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~ 40 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKE 40 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCc
Confidence 46778999998 57999999999999996 577777553
No 488
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=84.99 E-value=1.2 Score=47.38 Aligned_cols=36 Identities=22% Similarity=0.531 Sum_probs=31.7
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCccC
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTIE 48 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~Ve 48 (410)
...|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~ 41 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA 41 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence 4679999999999999999999998 69999976554
No 489
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=84.96 E-value=4.3 Score=39.81 Aligned_cols=35 Identities=29% Similarity=0.397 Sum_probs=28.4
Q ss_pred hCCcEEEECC-cHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 11 KGAKVLMVGA-GGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 11 ~~~~VlvvG~-GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
++++++|.|+ +|||.++++.|+..|..++.+++.+
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4678889985 7999999999999995567777643
No 490
>PRK08507 prephenate dehydrogenase; Validated
Probab=84.89 E-value=1.3 Score=42.63 Aligned_cols=30 Identities=27% Similarity=0.324 Sum_probs=26.1
Q ss_pred cEEEECCcHHHHHHHHHHHHhCCC-cEEEEe
Q 015243 14 KVLMVGAGGIGCELLKTLALSGFQ-DIHIID 43 (410)
Q Consensus 14 ~VlvvG~GgiG~ev~knLa~~Gv~-~i~liD 43 (410)
+|.|||+|.+|..++..|...|.. +++.+|
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d 32 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYD 32 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEc
Confidence 799999999999999999999974 566665
No 491
>PRK06185 hypothetical protein; Provisional
Probab=84.78 E-value=1.3 Score=44.80 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=31.1
Q ss_pred hCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 11 KGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 11 ~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
.+..|+|||+|..|+.++..|++.|+. ++|+|.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~-v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVD-VTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 457899999999999999999999985 89999763
No 492
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=84.74 E-value=1.3 Score=44.47 Aligned_cols=35 Identities=29% Similarity=0.444 Sum_probs=30.9
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCcc
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDTI 47 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~V 47 (410)
...|+|||+|..|+.+|..|++.|+ +++|+|.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 3579999999999999999999998 5999997654
No 493
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=84.71 E-value=1.2 Score=45.06 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=30.8
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
...|+|||+|..|+.+|-.|++.|+. ++|+|...
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence 46899999999999999999999986 99999764
No 494
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=84.69 E-value=2.6 Score=38.61 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=22.1
Q ss_pred EEEEC-CcHHHHHHHHHHHHhCCCcE
Q 015243 15 VLMVG-AGGIGCELLKTLALSGFQDI 39 (410)
Q Consensus 15 VlvvG-~GgiG~ev~knLa~~Gv~~i 39 (410)
|+|+| .|-+|.++++.|...|..-+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~ 26 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVI 26 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccc
Confidence 68887 89999999999999998744
No 495
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=84.68 E-value=1.1 Score=44.98 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=30.3
Q ss_pred CCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCCc
Q 015243 12 GAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMDT 46 (410)
Q Consensus 12 ~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D~ 46 (410)
...|+|||+|..|+.++..|++.|+. ++|+|.+.
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~-v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGAS-VALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCe-EEEEeCCC
Confidence 45799999999999999999999975 99999764
No 496
>PRK14031 glutamate dehydrogenase; Provisional
Probab=84.64 E-value=4.3 Score=42.10 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=33.1
Q ss_pred HHhCCcEEEECCcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 9 AIKGAKVLMVGAGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 9 ~L~~~~VlvvG~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
.|++++|+|.|.|-+|+..++.|...|..-+.+-|.+
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~ 261 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD 261 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3789999999999999999999999999877777844
No 497
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.63 E-value=1.2 Score=44.31 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=28.5
Q ss_pred CcEEEECC-cHHHHHHHHHHHHhCC-C-----cEEEEeC
Q 015243 13 AKVLMVGA-GGIGCELLKTLALSGF-Q-----DIHIIDM 44 (410)
Q Consensus 13 ~~VlvvG~-GgiG~ev~knLa~~Gv-~-----~i~liD~ 44 (410)
.||.|+|+ |.+|+.++..|+..|+ + +|.|+|-
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 58999999 9999999999999887 4 6999983
No 498
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=84.62 E-value=5.5 Score=36.97 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=27.3
Q ss_pred CcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 13 AKVLMVG-AGGIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 13 ~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD~D 45 (410)
++|+|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~ 34 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLG 34 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5789998 68999999999999998 58887754
No 499
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.59 E-value=2.4 Score=39.85 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=29.4
Q ss_pred HhCCcEEEECCc---HHHHHHHHHHHHhCCCcEEEEeCC
Q 015243 10 IKGAKVLMVGAG---GIGCELLKTLALSGFQDIHIIDMD 45 (410)
Q Consensus 10 L~~~~VlvvG~G---giG~ev~knLa~~Gv~~i~liD~D 45 (410)
|+.++|+|.|++ |+|..+++.|+..|. ++.+++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 567789999984 799999999999997 68887653
No 500
>PRK08628 short chain dehydrogenase; Provisional
Probab=84.49 E-value=4.8 Score=37.69 Aligned_cols=33 Identities=33% Similarity=0.446 Sum_probs=28.0
Q ss_pred HhCCcEEEEC-CcHHHHHHHHHHHHhCCCcEEEEe
Q 015243 10 IKGAKVLMVG-AGGIGCELLKTLALSGFQDIHIID 43 (410)
Q Consensus 10 L~~~~VlvvG-~GgiG~ev~knLa~~Gv~~i~liD 43 (410)
|.+++++|.| .|+||.++++.|+..|.. +.+++
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~ 38 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFG 38 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEc
Confidence 6788999998 679999999999999975 55554
Done!