BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015244
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 126/258 (48%), Positives = 173/258 (67%), Gaps = 4/258 (1%)
Query: 73 DRIEKLPGQPEVEFSQYGGYVTVDESAGRAMYYYFVEAQKSKDSAPLLLWLNGGPGCSSL 132
DRI +LPGQP V+F Y GY+TVDE AGR+++Y EA + APL+LWLNGGPGCSS+
Sbjct: 9 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 68
Query: 133 AYGAMQELGPFRVRSDGKSLFRNRYSWNNAANVLFLESPAGVGFSYSNRTSDYDESGDRK 192
AYGA +ELG FRV+ G L N Y WN ANVLFL+SPAGVGFSY+N +SD SGD +
Sbjct: 69 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 128
Query: 193 TAADNYMFLVNWLERFPEYKGREFYISGESYAGHYAPQLAHTILYHNKKANTTIINLKGI 252
TA D+Y FL W ERFP YK R+FYI+GESYAGHY P+L+ + ++ +INLKG
Sbjct: 129 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGF 184
Query: 253 MIGNAVINDETDVRGMYEYFQSHALISDEAAYQIQKYCDFSPNATRSDECNXXXXXXXXN 312
M+GN +I+D D G +E++ +H ++SD+ ++++ C S C+
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 244
Query: 313 ISHLDIYNIYAPLCSNSS 330
++D+Y++Y P+C+ +S
Sbjct: 245 QGNIDMYSLYTPVCNITS 262
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 271 bits (694), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 125/255 (49%), Positives = 171/255 (67%), Gaps = 4/255 (1%)
Query: 73 DRIEKLPGQPEVEFSQYGGYVTVDESAGRAMYYYFVEAQKSKDSAPLLLWLNGGPGCSSL 132
DRI +LPGQP V+F Y GY+TVDE AGR+++Y EA + APL+LWLNGGPGCSS+
Sbjct: 4 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 63
Query: 133 AYGAMQELGPFRVRSDGKSLFRNRYSWNNAANVLFLESPAGVGFSYSNRTSDYDESGDRK 192
AYGA +ELG FRV+ G L N Y WN ANVLFL+SPAGVGFSY+N +SD SGD +
Sbjct: 64 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 123
Query: 193 TAADNYMFLVNWLERFPEYKGREFYISGESYAGHYAPQLAHTILYHNKKANTTIINLKGI 252
TA D+Y FL W ERFP YK R+FYI+GESYAGHY P+L+ + ++ +INLKG
Sbjct: 124 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGF 179
Query: 253 MIGNAVINDETDVRGMYEYFQSHALISDEAAYQIQKYCDFSPNATRSDECNXXXXXXXXN 312
M+GN +I+D D G +E++ +H ++SD+ ++++ C S C+
Sbjct: 180 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 239
Query: 313 ISHLDIYNIYAPLCS 327
++D+Y++Y P+C+
Sbjct: 240 QGNIDMYSLYTPVCN 254
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 271 bits (694), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 125/255 (49%), Positives = 171/255 (67%), Gaps = 4/255 (1%)
Query: 73 DRIEKLPGQPEVEFSQYGGYVTVDESAGRAMYYYFVEAQKSKDSAPLLLWLNGGPGCSSL 132
DRI +LPGQP V+F Y GY+TVDE AGR+++Y EA + APL+LWLNGGPGCSS+
Sbjct: 5 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 64
Query: 133 AYGAMQELGPFRVRSDGKSLFRNRYSWNNAANVLFLESPAGVGFSYSNRTSDYDESGDRK 192
AYGA +ELG FRV+ G L N Y WN ANVLFL+SPAGVGFSY+N +SD SGD +
Sbjct: 65 AYGASEELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 124
Query: 193 TAADNYMFLVNWLERFPEYKGREFYISGESYAGHYAPQLAHTILYHNKKANTTIINLKGI 252
TA D+Y FL W ERFP YK R+FYI+GESYAGHY P+L+ + ++ +INLKG
Sbjct: 125 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGF 180
Query: 253 MIGNAVINDETDVRGMYEYFQSHALISDEAAYQIQKYCDFSPNATRSDECNXXXXXXXXN 312
M+GN +I+D D G +E++ +H ++SD+ ++++ C S C+
Sbjct: 181 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 240
Query: 313 ISHLDIYNIYAPLCS 327
++D+Y++Y P+C+
Sbjct: 241 QGNIDMYSLYTPVCN 255
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 271 bits (694), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 125/255 (49%), Positives = 171/255 (67%), Gaps = 4/255 (1%)
Query: 73 DRIEKLPGQPEVEFSQYGGYVTVDESAGRAMYYYFVEAQKSKDSAPLLLWLNGGPGCSSL 132
DRI +LPGQP V+F Y GY+TVDE AGR+++Y EA + APL+LWLNGGPGCSS+
Sbjct: 9 DRIARLPGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSV 68
Query: 133 AYGAMQELGPFRVRSDGKSLFRNRYSWNNAANVLFLESPAGVGFSYSNRTSDYDESGDRK 192
AYGA +ELG FRV+ G L N Y WN ANVLFL+SPAGVGFSY+N +SD SGD +
Sbjct: 69 AYGASEELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNR 128
Query: 193 TAADNYMFLVNWLERFPEYKGREFYISGESYAGHYAPQLAHTILYHNKKANTTIINLKGI 252
TA D+Y FL W ERFP YK R+FYI+GESYAGHY P+L+ + ++ +INLKG
Sbjct: 129 TAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLV----HRSKNPVINLKGF 184
Query: 253 MIGNAVINDETDVRGMYEYFQSHALISDEAAYQIQKYCDFSPNATRSDECNXXXXXXXXN 312
M+GN +I+D D G +E++ +H ++SD+ ++++ C S C+
Sbjct: 185 MVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAE 244
Query: 313 ISHLDIYNIYAPLCS 327
++D+Y++Y P+C+
Sbjct: 245 QGNIDMYSLYTPVCN 259
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 130/259 (50%), Positives = 168/259 (64%), Gaps = 7/259 (2%)
Query: 70 KENDRIEKLPGQPE-VEFSQYGGYVTVDESAGRAMYYYFVEAQKSKDSAP-LLLWLNGGP 127
+E+DRI LPGQP V F YGGYVT+D++ GRA+YY+F EA + +A L+LWLNGGP
Sbjct: 5 QEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLNGGP 64
Query: 128 GCSSLAYGAMQELGPFRVRSDGKSLFRNRYSWNNAANVLFLESPAGVGFSYSNRTSDYDE 187
GCSS+ GAMQELG FRV ++G+SL N Y+WN AAN+LF ESPAGVGFSYSN +SD
Sbjct: 65 GCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSDL-S 123
Query: 188 SGDRKTAADNYMFLVNWLERFPEYKGREFYISGESYAGHYAPQLAHTILYHNKKANTTII 247
GD K A D Y FLV W ERFP Y REFYI+GES GH+ PQL+ ++Y N+ N+ I
Sbjct: 124 MGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQ-VVYRNRN-NSPFI 179
Query: 248 NLKGIMIGNAVINDETDVRGMYEYFQSHALISDEAAYQIQKYCDFSPNATRSDECNXXXX 307
N +G+++ + + ND D+ GM+E + H LISDE K C + + EC
Sbjct: 180 NFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPECTEVWN 239
Query: 308 XXXXNISHLDIYNIYAPLC 326
+++ Y IY P C
Sbjct: 240 KALAEQGNINPYTIYTPTC 258
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 174 bits (441), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 117/348 (33%), Positives = 176/348 (50%), Gaps = 54/348 (15%)
Query: 71 ENDRIEKLPG---QPEVEFSQYGGYVTVDESAGRAMYYYFVEAQKSKDSAPLLLWLNGGP 127
+ D I++LPG QP F QY GY+ S + ++Y+FVE+QK +++P++LWLNGGP
Sbjct: 3 DQDEIQRLPGLAKQPS--FRQYSGYLK--SSGSKHLHYWFVESQKDPENSPVVLWLNGGP 58
Query: 128 GCSSLAYGAMQELGPFRVRSDGKSLFRNRYSWNNAANVLFLESPAGVGFSYSNRTSDYDE 187
GCSSL G + E GPF V+ DG +L N YSWN ANVL+LESPAGVGFSYS+ +
Sbjct: 59 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYA 115
Query: 188 SGDRKTAADNYMFLVNWLERFPEYKGREFYISGESYAGHYAPQLAHTILYHNKKANTTII 247
+ D + A N+ L ++ FPEYK + +++GESYAG Y P LA ++ +
Sbjct: 116 TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM------QDPSM 169
Query: 248 NLKGIMIGNAVINDETDVRGMYEYFQSHALISDEAAYQIQKY------CDFSPNATRSDE 301
NL+G+ +GN + + E + + + H L+ + +Q + C+F N
Sbjct: 170 NLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECV 229
Query: 302 CNXXXXXXXXNISHLDIYNIYAPLCSNSSLTARPKKASITNFD----------------- 344
N S L+IYN+YAP R +K ++ D
Sbjct: 230 TNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWHQA 289
Query: 345 ------------PCSDYYVYA-YLNRPDVQQALHANVTKLDHDWEPCS 379
PC++ + YLN P V++AL N+ + W+ C+
Sbjct: 290 LLRSGDKVRMDPPCTNTTAASTYLNNPYVRKAL--NIPEQLPQWDMCN 335
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 172 bits (435), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 154/280 (55%), Gaps = 22/280 (7%)
Query: 71 ENDRIEKLPG---QPEVEFSQYGGYVTVDESAGRAMYYYFVEAQKSKDSAPLLLWLNGGP 127
+ D I++LPG QP F QY GY+ S + ++Y+FVE+QK +++P++LWLNGGP
Sbjct: 5 DQDEIQRLPGLAKQPS--FRQYSGYLK--GSGSKHLHYWFVESQKDPENSPVVLWLNGGP 60
Query: 128 GCSSLAYGAMQELGPFRVRSDGKSLFRNRYSWNNAANVLFLESPAGVGFSYSNRTSDYDE 187
GCSSL G + E GPF V+ DG +L N YSWN ANVL+LESPAGVGFSYS+ +
Sbjct: 61 GCSSLD-GLLTEHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSD--DKFYA 117
Query: 188 SGDRKTAADNYMFLVNWLERFPEYKGREFYISGESYAGHYAPQLAHTILYHNKKANTTII 247
+ D + A N+ L ++ FPEYK + +++GESYAG Y P LA ++ +
Sbjct: 118 TNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM------QDPSM 171
Query: 248 NLKGIMIGNAVINDETDVRGMYEYFQSHALISDEAAYQIQKY------CDFSPNATRSDE 301
NL+G+ +GN + + E + + + H L+ + +Q + C+F N
Sbjct: 172 NLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFYDNKDLECV 231
Query: 302 CNXXXXXXXXNISHLDIYNIYAPLCSNSSLTARPKKASIT 341
N S L+IYN+YAP R +K ++
Sbjct: 232 TNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVV 271
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 172/378 (45%), Gaps = 53/378 (14%)
Query: 76 EKLPGQPEVEF-----SQYGGYVTV-----DESAGRAMYYYFVEAQKSKDSA----PLLL 121
E LPG EV + G++ + DE + Y+F + + + PL++
Sbjct: 12 ELLPGLSEVPDPSNIPQMHAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLII 71
Query: 122 WLNGGPGCSSLAYGAMQELGPFRVRSDGKSLFRNRYSWNNAANVLFLESPAGVGFSYSNR 181
WLNGGPGCSS+ GA+ E GPFRV SDGK L+ N SW + ++LF++ P G GFS
Sbjct: 72 WLNGGPGCSSMD-GALVESGPFRVNSDGK-LYLNEGSWISKGDLLFIDQPTGTGFSVEQN 129
Query: 182 TSD-------YDESGDRKTAADNYM-FLVNWLERFPEYKGREFYISGESYAGHYAPQLAH 233
+ +DE D + ++M FL N+ + FPE R+ +SGESYAG Y P A+
Sbjct: 130 KDEGKIDKNKFDE--DLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFAN 187
Query: 234 TILYHNK--KANTTIINLKGIMIGNAVINDETDVRGMYEYFQSHALISD-----EAAYQI 286
IL HNK K + +LK ++IGN I+ T + LI + +
Sbjct: 188 AILNHNKFSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNA 247
Query: 287 QKYCDFSPNATRSDECNXXXXXXXXNISHLDIYNIYAPLCSNSSLTARPKKASITNFD-- 344
+ C N+ +DE N I N+ SS ++ NF+
Sbjct: 248 HENCQNLINSASTDEAAHFSYQECEN-----ILNLLLSYTRESSQKGTADCLNMYNFNLK 302
Query: 345 ----------PCSDYYVYAYLNRPDVQQALHANVTKLDHDWEPCSDILRKWQDSPST--I 392
P +V + + P V +LH + K+DH W+ C++ + +P +
Sbjct: 303 DSYPSCGMNWPKDISFVSKFFSTPGVIDSLHLDSDKIDH-WKECTNSVGTKLSNPISKPS 361
Query: 393 IPLLREFMENGLRLWIFR 410
I LL +E+G+ + +F
Sbjct: 362 IHLLPGLLESGIEIVLFN 379
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 108/192 (56%), Gaps = 16/192 (8%)
Query: 87 SQYGGYVTVDESAGRAMYYYFVEAQKSKDSAPLLLWLNGGPGCSSLAYGAMQELGPFRVR 146
+QY GY+ V E + +++ E++ P++LWLNGGPGCSSL G ELGP +
Sbjct: 15 TQYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFELGPSSIG 72
Query: 147 SDGKSLFRNRYSWNNAANVLFLESPAGVGFSYSNRTSDYDESGDRKTAADNYMFLVNWLE 206
D K + N YSWN+ A V+FL+ P VGFSYS + S D Y FL + +
Sbjct: 73 PDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFFD 128
Query: 207 RFPEY--KGREFYISGESYAGHYAPQLAHTILYHNKKANTTIINLKGIMIGNAVINDETD 264
+FPEY KG++F+I+GESYAGHY P A IL H + NL ++IGN + TD
Sbjct: 129 QFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGL----TD 180
Query: 265 VRGMYEYFQSHA 276
Y Y++ A
Sbjct: 181 PLTQYNYYEPMA 192
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 127 bits (319), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 87 SQYGGYVTVDESAGRAMYYYFVEAQKSKDSAPLLLWLNGGPGCSSLAYGAMQELGPFRVR 146
+QY GY+ V E + +++ E++ P++LWLNGGPGCSSL G LGP +
Sbjct: 15 TQYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLT-GLFFALGPSSIG 72
Query: 147 SDGKSLFRNRYSWNNAANVLFLESPAGVGFSYSNRTSDYDESGDRKTAADNYMFLVNWLE 206
D K + N YSWN+ A V+FL+ P VGFSYS + S D Y FL + +
Sbjct: 73 PDLKPI-GNPYSWNSNATVIFLDQPVNVGFSYSGSSG---VSNTVAAGKDVYNFLELFFD 128
Query: 207 RFPEY--KGREFYISGESYAGHYAPQLAHTILYHNKKANTTIINLKGIMIGNAVINDETD 264
+FPEY KG++F+I+G SYAGHY P A IL H + NL ++IGN + TD
Sbjct: 129 QFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRN----FNLTSVLIGNGL----TD 180
Query: 265 VRGMYEYFQSHA 276
Y Y++ A
Sbjct: 181 PLTQYNYYEPMA 192
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 342 NFDPCSDYYVYAYLNRPDVQQALHANVT-KLDHDWEPCSDILRK-WQDSPSTIIPLLREF 399
++DPC++ Y AY NR DVQ ALHANVT +++ W CSD + W D+P +++P+ RE
Sbjct: 3 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 62
Query: 400 MENGLRLWIF 409
+ GLR+W+F
Sbjct: 63 IAAGLRIWVF 72
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 342 NFDPCSDYYVYAYLNRPDVQQALHANVT-KLDHDWEPCSDILRK-WQDSPSTIIPLLREF 399
++DPC++ Y AY NR DVQ ALHANVT +++ W CSD + W D+P +++P+ RE
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 400 MENGLRLWIF 409
+ GLR+W+F
Sbjct: 61 IAAGLRIWVF 70
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 342 NFDPCSDYYVYAYLNRPDVQQALHANVT-KLDHDWEPCSDILRK-WQDSPSTIIPLLREF 399
++DPC++ Y AY NR DVQ ALHANVT +++ W CSD + W D+P +++P+ RE
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 400 MENGLRLWIF 409
+ GLR+W+F
Sbjct: 61 IAAGLRIWVF 70
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 49/70 (70%), Gaps = 2/70 (2%)
Query: 342 NFDPCSDYYVYAYLNRPDVQQALHANVT-KLDHDWEPCSDILRK-WQDSPSTIIPLLREF 399
++DPC++ Y AY NR DVQ ALHANVT +++ W CSD + W D+P +++P+ RE
Sbjct: 1 SYDPCTERYSTAYYNRRDVQMALHANVTGAMNYTWATCSDTINTHWHDAPRSMLPIYREL 60
Query: 400 MENGLRLWIF 409
+ GLR+W+F
Sbjct: 61 IAAGLRIWVF 70
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 2/72 (2%)
Query: 340 ITNFDPCSDYYVYAYLNRPDVQQALHANVTKL-DHDWEPCSD-ILRKWQDSPSTIIPLLR 397
+ +DPC+ + YLN P+VQ ALHANV+ + ++ W CS+ I +W + ++P+ R
Sbjct: 1 LPPYDPCAVFNSINYLNLPEVQTALHANVSGIVEYPWTVCSNTIFDQWGQAADDLLPVYR 60
Query: 398 EFMENGLRLWIF 409
E ++ GLR+W++
Sbjct: 61 ELIQAGLRVWVY 72
>pdb|3F3F|C Chain C, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|D Chain D, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|G Chain G, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|H Chain H, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|C Chain C, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|D Chain D, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|G Chain G, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|H Chain H, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 570
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 360 VQQALHANVTKLDHDWE-PCSDIL 382
+Q +L ANV + +DWE PC DI+
Sbjct: 375 LQMSLEANVVDITNDWEQPCVDII 398
>pdb|3EWE|B Chain B, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|D Chain D, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 564
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 360 VQQALHANVTKLDHDWE-PCSDIL 382
+Q +L ANV + +DWE PC DI+
Sbjct: 375 LQMSLEANVVDITNDWEQPCVDII 398
>pdb|3F3P|C Chain C, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|D Chain D, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|G Chain G, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|H Chain H, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|K Chain K, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|L Chain L, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 570
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 360 VQQALHANVTKLDHDWE-PCSDIL 382
+Q +L ANV + +DWE PC DI+
Sbjct: 375 LQXSLEANVVDITNDWEQPCVDII 398
>pdb|1U0E|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase
pdb|1U0E|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase
pdb|1U0F|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Glucose 6-Phosphate
pdb|1U0F|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Glucose 6-Phosphate
pdb|1U0G|A Chain A, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Erythrose 4-Phosphate
pdb|1U0G|B Chain B, Crystal Structure Of Mouse Phosphoglucose Isomerase In
Complex With Erythrose 4-Phosphate
Length = 564
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 1 MEKQPSLLLALLFFIIVSCYIAETHA 26
+EK +LLALL ++CY ETHA
Sbjct: 312 LEKNAPVLLALLGIWYINCYGCETHA 337
>pdb|2CVP|A Chain A, Crystal Structure Of Mouse Amf
pdb|2CVP|B Chain B, Crystal Structure Of Mouse Amf
pdb|2CXN|A Chain A, Crystal Structure Of Mouse Amf PHOSPHATE COMPLEX
pdb|2CXN|B Chain B, Crystal Structure Of Mouse Amf PHOSPHATE COMPLEX
pdb|2CXO|A Chain A, Crystal Structure Of Mouse Amf E4P COMPLEX
pdb|2CXO|B Chain B, Crystal Structure Of Mouse Amf E4P COMPLEX
pdb|2CXP|A Chain A, Crystal Structure Of Mouse Amf / A5p Complex
pdb|2CXP|B Chain B, Crystal Structure Of Mouse Amf / A5p Complex
pdb|2CXQ|A Chain A, Crystal Structure Of Mouse Amf S6P COMPLEX
pdb|2CXQ|B Chain B, Crystal Structure Of Mouse Amf S6P COMPLEX
pdb|2CXR|A Chain A, Crystal Structure Of Mouse Amf 6PG COMPLEX
pdb|2CXR|B Chain B, Crystal Structure Of Mouse Amf 6PG COMPLEX
pdb|2CXS|A Chain A, Crystal Structure Of Mouse Amf / F6p Complex
pdb|2CXS|B Chain B, Crystal Structure Of Mouse Amf / F6p Complex
pdb|2CXT|A Chain A, Crystal Structure Of Mouse Amf F6P COMPLEX
pdb|2CXT|B Chain B, Crystal Structure Of Mouse Amf F6P COMPLEX
pdb|2CXU|A Chain A, Crystal Structure Of Mouse Amf / M6p Complex
pdb|2CXU|B Chain B, Crystal Structure Of Mouse Amf / M6p Complex
Length = 557
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 1 MEKQPSLLLALLFFIIVSCYIAETHA 26
+EK +LLALL ++CY ETHA
Sbjct: 312 LEKNAPVLLALLGIWYINCYGCETHA 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,709,592
Number of Sequences: 62578
Number of extensions: 536475
Number of successful extensions: 1247
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1184
Number of HSP's gapped (non-prelim): 35
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)