Query 015246
Match_columns 410
No_of_seqs 725 out of 1687
Neff 12.3
Searched_HMMs 46136
Date Fri Mar 29 04:29:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 4.8E-64 1E-68 464.8 51.8 404 2-409 376-786 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.7E-63 3.6E-68 461.2 52.0 405 2-406 443-876 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 2.9E-59 6.3E-64 430.3 41.8 393 3-408 165-559 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 8.7E-59 1.9E-63 437.0 43.8 399 1-408 157-621 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.8E-58 3.9E-63 425.1 42.0 393 2-409 93-526 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 1E-57 2.3E-62 429.7 41.4 396 1-409 126-521 (857)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 9.9E-30 2.1E-34 245.6 50.2 387 6-404 509-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-29 6.5E-34 242.2 50.6 396 3-409 438-869 (899)
9 PRK11447 cellulose synthase su 100.0 3.1E-23 6.6E-28 201.2 46.1 389 5-405 278-739 (1157)
10 TIGR00990 3a0801s09 mitochondr 100.0 2E-22 4.2E-27 184.0 48.2 395 4-407 135-572 (615)
11 PRK11788 tetratricopeptide rep 99.9 1.8E-23 3.8E-28 181.8 34.4 294 39-339 43-346 (389)
12 PRK11788 tetratricopeptide rep 99.9 1.7E-23 3.7E-28 181.9 33.6 301 73-378 42-354 (389)
13 PRK15174 Vi polysaccharide exp 99.9 3.5E-22 7.6E-27 181.7 43.2 329 2-340 48-381 (656)
14 PRK10049 pgaA outer membrane p 99.9 1.1E-21 2.4E-26 182.3 46.7 398 3-410 22-460 (765)
15 KOG4626 O-linked N-acetylgluco 99.9 2.4E-23 5.3E-28 174.2 31.8 353 6-370 126-484 (966)
16 KOG4626 O-linked N-acetylgluco 99.9 4E-23 8.6E-28 172.9 32.3 391 5-410 91-489 (966)
17 PRK11447 cellulose synthase su 99.9 6.4E-22 1.4E-26 192.1 45.7 358 2-371 309-740 (1157)
18 PRK15174 Vi polysaccharide exp 99.9 1.1E-21 2.3E-26 178.6 42.0 358 6-371 15-381 (656)
19 PRK14574 hmsH outer membrane p 99.9 1E-19 2.2E-24 166.2 46.4 397 5-410 43-517 (822)
20 TIGR00990 3a0801s09 mitochondr 99.9 1.6E-19 3.5E-24 165.0 43.7 371 33-410 129-541 (615)
21 PRK10049 pgaA outer membrane p 99.9 8.9E-20 1.9E-24 169.7 41.5 383 16-410 2-426 (765)
22 PRK09782 bacteriophage N4 rece 99.9 1.8E-17 3.9E-22 154.9 46.9 391 3-409 189-709 (987)
23 KOG2002 TPR-containing nuclear 99.9 1.6E-18 3.6E-23 152.6 36.9 398 4-410 315-749 (1018)
24 PRK14574 hmsH outer membrane p 99.9 4.3E-17 9.3E-22 149.3 44.2 368 33-409 36-482 (822)
25 KOG4422 Uncharacterized conser 99.9 6.6E-17 1.4E-21 130.2 38.7 399 6-408 125-592 (625)
26 KOG4422 Uncharacterized conser 99.8 1.4E-16 2.9E-21 128.5 35.2 354 28-387 204-606 (625)
27 PRK09782 bacteriophage N4 rece 99.8 7.8E-16 1.7E-20 144.1 44.7 389 3-408 320-742 (987)
28 KOG2002 TPR-containing nuclear 99.8 4E-16 8.7E-21 137.9 35.5 396 6-407 280-710 (1018)
29 KOG2003 TPR repeat-containing 99.8 4.2E-17 9.1E-22 132.5 27.2 186 218-408 502-691 (840)
30 KOG2076 RNA polymerase III tra 99.8 4.3E-15 9.3E-20 130.6 39.5 363 38-404 146-553 (895)
31 KOG2003 TPR repeat-containing 99.8 3.5E-16 7.7E-21 127.2 29.6 379 5-392 246-709 (840)
32 KOG0495 HAT repeat protein [RN 99.8 3E-14 6.5E-19 121.1 41.8 291 3-301 413-710 (913)
33 KOG0495 HAT repeat protein [RN 99.8 8.4E-14 1.8E-18 118.4 41.9 367 33-410 518-884 (913)
34 KOG1915 Cell cycle control pro 99.8 4.8E-14 1E-18 115.5 38.6 386 8-405 85-535 (677)
35 KOG2076 RNA polymerase III tra 99.8 6.4E-15 1.4E-19 129.5 35.6 331 69-404 142-510 (895)
36 PRK10747 putative protoheme IX 99.8 2.2E-15 4.8E-20 129.8 32.2 280 114-405 97-389 (398)
37 TIGR00540 hemY_coli hemY prote 99.8 3.6E-15 7.7E-20 129.2 33.3 291 42-338 95-397 (409)
38 PF13429 TPR_15: Tetratricopep 99.8 3E-18 6.5E-23 141.2 13.6 258 141-404 13-275 (280)
39 PF13429 TPR_15: Tetratricopep 99.8 3.4E-18 7.3E-23 140.9 13.6 261 36-303 13-275 (280)
40 PRK10747 putative protoheme IX 99.8 7.9E-15 1.7E-19 126.4 34.7 282 44-338 97-388 (398)
41 TIGR00540 hemY_coli hemY prote 99.8 3.8E-15 8.2E-20 129.1 32.9 285 113-403 96-396 (409)
42 KOG0547 Translocase of outer m 99.8 2.8E-14 6.1E-19 117.2 33.0 386 4-404 123-564 (606)
43 KOG1155 Anaphase-promoting com 99.7 4.3E-13 9.4E-18 109.6 36.6 357 29-402 162-532 (559)
44 COG3071 HemY Uncharacterized e 99.7 1.2E-13 2.7E-18 110.8 31.9 282 114-404 97-388 (400)
45 COG3071 HemY Uncharacterized e 99.7 1.9E-13 4.1E-18 109.7 32.2 286 43-338 96-388 (400)
46 COG2956 Predicted N-acetylgluc 99.7 1.3E-13 2.9E-18 107.4 30.0 289 44-339 48-346 (389)
47 KOG1155 Anaphase-promoting com 99.7 7.3E-13 1.6E-17 108.3 35.2 324 65-405 163-494 (559)
48 COG2956 Predicted N-acetylgluc 99.7 2.3E-13 5E-18 106.1 30.9 290 77-371 46-347 (389)
49 KOG1126 DNA-binding cell divis 99.7 2.4E-14 5.2E-19 122.0 23.5 277 82-371 335-620 (638)
50 KOG1126 DNA-binding cell divis 99.7 6.7E-14 1.5E-18 119.4 24.9 288 45-344 333-624 (638)
51 KOG1915 Cell cycle control pro 99.7 2.1E-11 4.6E-16 100.3 36.9 254 43-304 85-350 (677)
52 KOG4318 Bicoid mRNA stability 99.6 3.5E-13 7.6E-18 118.5 24.8 250 17-288 11-283 (1088)
53 KOG1129 TPR repeat-containing 99.6 6.8E-14 1.5E-18 109.2 18.3 234 170-409 222-461 (478)
54 KOG1173 Anaphase-promoting com 99.6 2E-11 4.2E-16 102.6 33.6 400 2-410 55-522 (611)
55 KOG1173 Anaphase-promoting com 99.6 1.6E-11 3.5E-16 103.1 30.8 284 98-388 241-533 (611)
56 PRK12370 invasion protein regu 99.6 1.9E-12 4E-17 116.7 27.7 269 28-306 253-536 (553)
57 KOG0547 Translocase of outer m 99.6 2.5E-11 5.3E-16 100.3 31.0 367 34-409 118-535 (606)
58 KOG1156 N-terminal acetyltrans 99.6 2E-10 4.4E-15 98.2 35.8 386 6-407 17-469 (700)
59 KOG2376 Signal recognition par 99.6 2.7E-10 5.9E-15 96.4 36.1 387 3-402 19-516 (652)
60 PRK12370 invasion protein regu 99.6 1.4E-11 3.1E-16 111.1 30.1 264 135-407 255-536 (553)
61 TIGR02521 type_IV_pilW type IV 99.6 8.3E-12 1.8E-16 100.7 25.7 165 67-234 32-197 (234)
62 TIGR02521 type_IV_pilW type IV 99.6 6E-12 1.3E-16 101.5 24.8 197 207-406 32-232 (234)
63 PF12569 NARP1: NMDA receptor- 99.6 1.3E-10 2.7E-15 101.6 33.9 125 211-337 199-331 (517)
64 KOG1129 TPR repeat-containing 99.6 1.1E-12 2.4E-17 102.6 18.8 227 140-371 227-458 (478)
65 KOG2047 mRNA splicing factor [ 99.5 2.7E-09 5.8E-14 91.5 39.3 394 3-405 109-614 (835)
66 PF12569 NARP1: NMDA receptor- 99.5 1.3E-10 2.8E-15 101.5 31.0 292 4-304 12-333 (517)
67 KOG4162 Predicted calmodulin-b 99.5 1.6E-09 3.4E-14 94.8 36.2 128 279-408 653-785 (799)
68 KOG3785 Uncharacterized conser 99.5 1.2E-09 2.7E-14 86.9 31.5 385 5-409 31-493 (557)
69 KOG3785 Uncharacterized conser 99.5 2E-10 4.4E-15 91.3 26.8 367 3-380 64-497 (557)
70 KOG1156 N-terminal acetyltrans 99.5 4.2E-09 9.1E-14 90.4 36.4 385 6-405 51-510 (700)
71 KOG1174 Anaphase-promoting com 99.5 3.5E-09 7.6E-14 86.1 34.0 267 134-408 230-502 (564)
72 KOG1840 Kinesin light chain [C 99.5 3.5E-11 7.7E-16 103.7 24.0 237 170-406 198-479 (508)
73 PRK11189 lipoprotein NlpI; Pro 99.4 1.9E-10 4.1E-15 95.2 24.9 226 146-381 36-274 (296)
74 KOG2047 mRNA splicing factor [ 99.4 3.8E-08 8.3E-13 84.7 38.3 260 139-402 390-683 (835)
75 PRK11189 lipoprotein NlpI; Pro 99.4 5.6E-10 1.2E-14 92.4 26.9 224 110-342 35-267 (296)
76 COG3063 PilF Tfp pilus assembl 99.4 5.6E-10 1.2E-14 83.5 23.7 199 68-270 37-236 (250)
77 KOG1174 Anaphase-promoting com 99.4 2.6E-09 5.6E-14 86.8 28.9 295 79-381 209-509 (564)
78 KOG4340 Uncharacterized conser 99.4 2.5E-09 5.4E-14 83.2 27.3 387 2-404 16-441 (459)
79 KOG1840 Kinesin light chain [C 99.4 7.7E-10 1.7E-14 95.6 27.0 232 138-369 201-477 (508)
80 KOG0548 Molecular co-chaperone 99.4 6E-09 1.3E-13 87.6 30.5 359 5-371 11-455 (539)
81 COG3063 PilF Tfp pilus assembl 99.4 1.2E-09 2.7E-14 81.7 23.1 199 33-235 37-236 (250)
82 KOG2376 Signal recognition par 99.4 4.4E-08 9.6E-13 83.4 34.2 364 37-409 18-490 (652)
83 KOG4318 Bicoid mRNA stability 99.4 8E-11 1.7E-15 104.1 18.8 271 52-357 11-286 (1088)
84 cd05804 StaR_like StaR_like; a 99.4 2.7E-08 5.8E-13 85.7 33.9 92 176-268 119-213 (355)
85 PF04733 Coatomer_E: Coatomer 99.4 6.1E-11 1.3E-15 96.5 16.0 248 109-371 9-265 (290)
86 PF13041 PPR_2: PPR repeat fam 99.4 3.4E-12 7.4E-17 73.9 6.3 47 100-146 2-48 (50)
87 PF13041 PPR_2: PPR repeat fam 99.3 3.8E-12 8.2E-17 73.8 6.4 49 29-77 1-49 (50)
88 KOG4340 Uncharacterized conser 99.3 1.3E-09 2.9E-14 84.6 21.5 351 34-403 13-372 (459)
89 KOG0624 dsRNA-activated protei 99.3 3.2E-08 6.9E-13 78.7 28.3 300 65-371 37-370 (504)
90 cd05804 StaR_like StaR_like; a 99.3 8E-08 1.7E-12 82.7 33.2 271 31-304 6-292 (355)
91 KOG4162 Predicted calmodulin-b 99.3 3.5E-07 7.5E-12 80.6 34.6 377 27-410 319-753 (799)
92 KOG0548 Molecular co-chaperone 99.2 1.1E-07 2.4E-12 80.2 29.6 363 39-409 10-458 (539)
93 PRK04841 transcriptional regul 99.2 1E-07 2.3E-12 92.6 34.6 333 40-372 383-761 (903)
94 PRK04841 transcriptional regul 99.2 3.6E-07 7.8E-12 89.0 38.0 333 74-406 382-760 (903)
95 PF04733 Coatomer_E: Coatomer 99.2 2.2E-09 4.9E-14 87.4 18.8 81 222-304 183-264 (290)
96 KOG0624 dsRNA-activated protei 99.1 1.5E-06 3.3E-11 69.4 32.5 304 29-340 36-370 (504)
97 KOG1125 TPR repeat-containing 99.1 2.4E-08 5.1E-13 84.9 20.3 251 144-399 293-564 (579)
98 KOG1125 TPR repeat-containing 99.1 4.9E-08 1.1E-12 83.0 21.2 252 40-298 294-564 (579)
99 KOG3617 WD40 and TPR repeat-co 99.1 1.5E-06 3.3E-11 77.4 29.4 66 273-338 1077-1172(1416)
100 KOG3616 Selective LIM binding 99.1 3.3E-07 7.2E-12 80.6 24.9 314 35-399 593-930 (1636)
101 KOG1128 Uncharacterized conser 99.1 1.1E-07 2.4E-12 83.2 21.8 219 133-371 395-616 (777)
102 KOG3617 WD40 and TPR repeat-co 99.1 2.6E-06 5.6E-11 76.1 30.3 345 6-404 738-1107(1416)
103 PLN02789 farnesyltranstransfer 99.1 8.5E-07 1.8E-11 73.5 26.3 124 145-271 46-172 (320)
104 KOG1914 mRNA cleavage and poly 99.1 6.7E-06 1.4E-10 70.0 36.2 374 28-406 17-501 (656)
105 PLN02789 farnesyltranstransfer 99.0 1.4E-06 3.1E-11 72.2 26.1 214 34-253 40-267 (320)
106 KOG1070 rRNA processing protei 99.0 2.2E-07 4.8E-12 87.0 22.5 244 154-404 1443-1698(1710)
107 KOG0985 Vesicle coat protein c 99.0 1.8E-05 4E-10 72.5 33.5 316 30-389 983-1325(1666)
108 KOG1070 rRNA processing protei 99.0 1.2E-06 2.7E-11 82.2 26.3 201 136-340 1458-1663(1710)
109 KOG0985 Vesicle coat protein c 99.0 1.6E-05 3.6E-10 72.7 32.0 114 66-194 1104-1217(1666)
110 KOG3616 Selective LIM binding 98.9 2.8E-06 6.1E-11 75.0 26.1 167 108-299 739-905 (1636)
111 TIGR03302 OM_YfiO outer membra 98.9 7E-07 1.5E-11 71.8 21.5 184 208-408 35-234 (235)
112 PRK10370 formate-dependent nit 98.9 2.8E-07 6.1E-12 71.0 18.0 153 213-380 23-181 (198)
113 KOG1127 TPR repeat-containing 98.9 2.8E-06 6.1E-11 77.3 26.1 380 12-402 474-909 (1238)
114 KOG1128 Uncharacterized conser 98.9 7.2E-07 1.6E-11 78.3 21.6 220 168-407 395-617 (777)
115 PRK14720 transcript cleavage f 98.9 2.3E-06 4.9E-11 79.3 25.9 236 65-353 30-268 (906)
116 KOG3081 Vesicle coat complex C 98.9 7.7E-06 1.7E-10 63.2 24.4 250 38-304 15-270 (299)
117 COG5010 TadD Flp pilus assembl 98.9 8.8E-07 1.9E-11 68.2 19.2 157 210-369 70-229 (257)
118 TIGR03302 OM_YfiO outer membra 98.9 1E-06 2.3E-11 70.9 20.8 60 246-305 171-232 (235)
119 COG5010 TadD Flp pilus assembl 98.9 6.3E-07 1.4E-11 69.0 17.9 160 175-338 70-229 (257)
120 KOG3081 Vesicle coat complex C 98.9 6E-06 1.3E-10 63.8 23.0 251 3-270 15-271 (299)
121 KOG1127 TPR repeat-containing 98.9 4.2E-06 9.1E-11 76.2 25.7 395 5-406 501-952 (1238)
122 PRK15359 type III secretion sy 98.9 1.1E-07 2.3E-12 69.4 12.4 121 261-387 13-136 (144)
123 PRK10370 formate-dependent nit 98.8 3.8E-07 8.2E-12 70.3 16.0 157 3-175 23-182 (198)
124 PRK15359 type III secretion sy 98.8 5.7E-07 1.2E-11 65.6 15.2 108 227-340 14-121 (144)
125 PRK14720 transcript cleavage f 98.8 1.3E-05 2.7E-10 74.6 26.6 238 29-322 29-268 (906)
126 PRK15179 Vi polysaccharide bio 98.8 3.5E-06 7.6E-11 77.2 22.4 143 237-382 82-227 (694)
127 KOG3060 Uncharacterized conser 98.8 2.4E-05 5.2E-10 60.1 22.6 186 116-305 27-220 (289)
128 PF12854 PPR_1: PPR repeat 98.8 1.4E-08 3E-13 52.7 3.8 32 26-57 2-33 (34)
129 PRK15179 Vi polysaccharide bio 98.8 5.9E-06 1.3E-10 75.8 23.0 147 62-212 82-228 (694)
130 PF12854 PPR_1: PPR repeat 98.7 2.2E-08 4.8E-13 51.9 4.1 32 131-162 2-33 (34)
131 COG4783 Putative Zn-dependent 98.7 5E-05 1.1E-09 64.1 25.1 140 109-270 314-454 (484)
132 KOG3060 Uncharacterized conser 98.7 3.3E-05 7.2E-10 59.4 21.9 126 36-164 57-182 (289)
133 COG4783 Putative Zn-dependent 98.7 2.8E-05 6.2E-10 65.5 22.5 148 214-380 314-462 (484)
134 TIGR02552 LcrH_SycD type III s 98.7 7.6E-07 1.7E-11 64.7 11.9 113 263-379 5-120 (135)
135 TIGR02552 LcrH_SycD type III s 98.6 3.6E-06 7.7E-11 61.1 14.2 97 32-130 18-114 (135)
136 KOG2053 Mitochondrial inherita 98.6 0.00059 1.3E-08 62.2 40.7 222 7-235 20-255 (932)
137 PF09976 TPR_21: Tetratricopep 98.5 1.2E-05 2.7E-10 58.8 14.8 22 284-305 56-77 (145)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.2E-05 2.6E-10 68.2 15.2 122 71-198 174-295 (395)
139 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.2E-05 4.9E-10 66.6 16.0 124 209-338 172-295 (395)
140 PRK15363 pathogenicity island 98.4 8.8E-06 1.9E-10 58.4 11.2 90 314-404 38-130 (157)
141 PF09976 TPR_21: Tetratricopep 98.4 3.7E-05 8E-10 56.4 15.0 85 249-335 56-142 (145)
142 TIGR02795 tol_pal_ybgF tol-pal 98.3 1.5E-05 3.2E-10 56.3 11.0 94 278-371 4-105 (119)
143 cd00189 TPR Tetratricopeptide 98.3 1.5E-05 3.3E-10 53.7 9.6 93 315-408 4-99 (100)
144 KOG2053 Mitochondrial inherita 98.3 0.0037 8E-08 57.3 38.5 193 5-201 52-256 (932)
145 PF13432 TPR_16: Tetratricopep 98.2 6.6E-06 1.4E-10 50.7 6.9 62 348-410 3-64 (65)
146 PRK10866 outer membrane biogen 98.2 0.00057 1.2E-08 54.7 19.2 177 213-405 39-240 (243)
147 COG4700 Uncharacterized protei 98.2 0.00091 2E-08 49.2 17.8 154 214-369 64-220 (251)
148 PF10037 MRP-S27: Mitochondria 98.2 5.3E-05 1.1E-09 64.7 13.5 120 132-251 62-183 (429)
149 PLN03088 SGT1, suppressor of 98.2 2.6E-05 5.6E-10 66.4 11.7 100 281-383 7-109 (356)
150 TIGR00756 PPR pentatricopeptid 98.2 3.8E-06 8.1E-11 44.3 4.3 33 33-65 2-34 (35)
151 PF13414 TPR_11: TPR repeat; P 98.2 1E-05 2.3E-10 50.6 6.7 67 341-408 2-69 (69)
152 PF08579 RPM2: Mitochondrial r 98.2 3.3E-05 7E-10 51.4 8.9 79 35-113 29-116 (120)
153 TIGR00756 PPR pentatricopeptid 98.2 4E-06 8.6E-11 44.2 4.0 31 104-134 3-33 (35)
154 PF13812 PPR_3: Pentatricopept 98.2 4.5E-06 9.8E-11 43.6 4.1 32 33-64 3-34 (34)
155 PF10037 MRP-S27: Mitochondria 98.2 6E-05 1.3E-09 64.4 12.8 123 62-184 62-186 (429)
156 PF05843 Suf: Suppressor of fo 98.1 6.9E-05 1.5E-09 61.5 12.7 128 242-371 2-136 (280)
157 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00015 3.2E-09 51.2 12.8 96 35-130 6-105 (119)
158 PF05843 Suf: Suppressor of fo 98.1 0.00019 4.2E-09 58.9 14.9 130 68-200 3-136 (280)
159 cd00189 TPR Tetratricopeptide 98.1 8.5E-05 1.8E-09 49.9 11.1 21 107-127 40-60 (100)
160 PF13812 PPR_3: Pentatricopept 98.1 6.6E-06 1.4E-10 43.0 4.1 27 104-130 4-30 (34)
161 PRK10866 outer membrane biogen 98.1 0.0022 4.8E-08 51.4 20.1 58 72-130 38-98 (243)
162 PF14938 SNAP: Soluble NSF att 98.1 0.00048 1E-08 56.9 16.8 26 244-269 158-183 (282)
163 PF12895 Apc3: Anaphase-promot 98.1 1.3E-05 2.8E-10 52.4 6.1 20 177-196 31-50 (84)
164 PF08579 RPM2: Mitochondrial r 98.1 4.9E-05 1.1E-09 50.6 8.4 76 3-78 32-116 (120)
165 PF12895 Apc3: Anaphase-promot 98.1 1.9E-05 4.2E-10 51.5 6.7 12 292-303 5-16 (84)
166 KOG0550 Molecular chaperone (D 98.1 0.0048 1E-07 51.5 22.0 156 180-340 178-350 (486)
167 PRK15363 pathogenicity island 98.1 0.00032 6.9E-09 50.6 13.0 98 136-235 35-132 (157)
168 KOG0553 TPR repeat-containing 98.1 3.3E-05 7.1E-10 61.1 8.7 99 285-386 90-191 (304)
169 PF14938 SNAP: Soluble NSF att 98.0 0.0003 6.4E-09 58.1 14.6 25 209-233 38-62 (282)
170 PLN03088 SGT1, suppressor of 98.0 0.00019 4.1E-09 61.3 13.5 88 6-95 12-99 (356)
171 PRK02603 photosystem I assembl 98.0 0.00048 1E-08 52.2 14.4 85 244-329 38-124 (172)
172 PRK02603 photosystem I assembl 98.0 0.00048 1E-08 52.2 14.1 88 32-120 36-125 (172)
173 CHL00033 ycf3 photosystem I as 98.0 0.00033 7.1E-09 52.9 13.2 100 12-112 15-117 (168)
174 KOG2041 WD40 repeat protein [G 97.9 0.014 3E-07 52.4 25.6 325 28-388 689-1068(1189)
175 PF12688 TPR_5: Tetratrico pep 97.9 0.00098 2.1E-08 46.3 13.3 55 250-304 10-66 (120)
176 KOG0550 Molecular chaperone (D 97.9 0.0018 3.9E-08 53.9 16.6 260 105-371 53-350 (486)
177 PF14559 TPR_19: Tetratricopep 97.9 2.2E-05 4.7E-10 48.9 4.7 55 354-409 3-57 (68)
178 COG4235 Cytochrome c biogenesi 97.9 0.00074 1.6E-08 53.9 13.6 114 257-372 138-257 (287)
179 PRK10153 DNA-binding transcrip 97.9 0.0011 2.4E-08 59.2 16.4 64 343-408 421-484 (517)
180 PF13525 YfiO: Outer membrane 97.9 0.0026 5.7E-08 49.6 16.7 73 324-397 123-198 (203)
181 CHL00033 ycf3 photosystem I as 97.9 0.00073 1.6E-08 51.0 13.3 62 243-304 37-100 (168)
182 KOG1914 mRNA cleavage and poly 97.9 0.014 3.1E-07 50.6 36.7 358 9-371 32-501 (656)
183 KOG0553 TPR repeat-containing 97.8 0.00042 9.1E-09 55.1 11.3 98 40-141 90-187 (304)
184 COG4700 Uncharacterized protei 97.8 0.0061 1.3E-07 45.0 17.7 134 203-338 86-220 (251)
185 PF13525 YfiO: Outer membrane 97.8 0.0064 1.4E-07 47.5 18.0 60 36-95 10-71 (203)
186 PRK10153 DNA-binding transcrip 97.8 0.0031 6.8E-08 56.5 18.1 62 171-234 420-481 (517)
187 PRK10803 tol-pal system protei 97.8 0.0004 8.7E-09 56.0 11.2 92 278-371 145-246 (263)
188 COG4235 Cytochrome c biogenesi 97.8 0.0024 5.2E-08 51.1 15.1 99 65-165 155-256 (287)
189 PF14559 TPR_19: Tetratricopep 97.8 0.00011 2.3E-09 45.8 6.2 53 7-60 2-54 (68)
190 PF01535 PPR: PPR repeat; Int 97.8 4E-05 8.6E-10 38.9 3.4 29 33-61 2-30 (31)
191 PF01535 PPR: PPR repeat; Int 97.8 4.2E-05 9E-10 38.8 3.5 25 104-128 3-27 (31)
192 PF13371 TPR_9: Tetratricopept 97.8 0.00014 2.9E-09 46.1 6.6 58 351-409 4-61 (73)
193 PF12688 TPR_5: Tetratrico pep 97.8 0.0029 6.3E-08 44.0 13.3 53 41-93 11-65 (120)
194 PRK15331 chaperone protein Sic 97.8 0.001 2.3E-08 48.3 11.3 84 286-370 47-133 (165)
195 PF13432 TPR_16: Tetratricopep 97.6 0.00029 6.2E-09 43.3 6.4 56 4-60 5-60 (65)
196 PF06239 ECSIT: Evolutionarily 97.6 0.0025 5.5E-08 48.5 12.1 105 28-151 44-153 (228)
197 KOG1538 Uncharacterized conser 97.6 0.032 7E-07 49.7 20.0 87 276-371 747-846 (1081)
198 COG3898 Uncharacterized membra 97.6 0.031 6.8E-07 46.6 29.4 290 104-406 85-392 (531)
199 PF04840 Vps16_C: Vps16, C-ter 97.6 0.033 7.2E-07 46.6 28.7 109 243-367 179-287 (319)
200 PF13414 TPR_11: TPR repeat; P 97.6 0.00065 1.4E-08 42.3 7.5 60 173-233 5-65 (69)
201 PF06239 ECSIT: Evolutionarily 97.5 0.0011 2.3E-08 50.4 9.2 105 64-187 45-154 (228)
202 KOG1130 Predicted G-alpha GTPa 97.5 0.0016 3.5E-08 54.2 10.9 263 5-268 26-342 (639)
203 KOG1130 Predicted G-alpha GTPa 97.5 0.0016 3.4E-08 54.2 10.6 127 243-369 197-342 (639)
204 KOG2041 WD40 repeat protein [G 97.5 0.068 1.5E-06 48.2 22.3 108 4-126 713-821 (1189)
205 PF10300 DUF3808: Protein of u 97.5 0.017 3.8E-07 51.4 17.6 173 226-405 177-375 (468)
206 PF03704 BTAD: Bacterial trans 97.5 0.0071 1.5E-07 44.4 12.8 69 104-173 65-138 (146)
207 PRK10803 tol-pal system protei 97.4 0.0023 5.1E-08 51.7 10.6 89 252-340 154-246 (263)
208 PF07079 DUF1347: Protein of u 97.4 0.061 1.3E-06 45.9 33.1 137 6-147 16-178 (549)
209 KOG1538 Uncharacterized conser 97.4 0.05 1.1E-06 48.6 18.9 86 244-340 750-846 (1081)
210 PF13371 TPR_9: Tetratricopept 97.4 0.0018 3.8E-08 40.9 7.7 56 4-60 3-58 (73)
211 COG4105 ComL DNA uptake lipopr 97.4 0.045 9.8E-07 43.1 20.0 60 348-408 173-235 (254)
212 KOG1258 mRNA processing protei 97.4 0.091 2E-06 46.6 31.3 370 11-391 60-489 (577)
213 KOG2280 Vacuolar assembly/sort 97.4 0.11 2.4E-06 47.3 25.7 106 244-364 687-792 (829)
214 PF13281 DUF4071: Domain of un 97.3 0.082 1.8E-06 44.8 19.4 76 176-251 146-227 (374)
215 PF13424 TPR_12: Tetratricopep 97.3 0.00087 1.9E-08 43.0 5.7 63 343-405 6-74 (78)
216 KOG0543 FKBP-type peptidyl-pro 97.3 0.0022 4.8E-08 53.4 9.0 124 280-405 212-354 (397)
217 PRK15331 chaperone protein Sic 97.3 0.038 8.2E-07 40.4 15.4 88 180-269 46-133 (165)
218 KOG2796 Uncharacterized conser 97.3 0.06 1.3E-06 42.4 23.5 129 243-371 179-315 (366)
219 KOG2796 Uncharacterized conser 97.3 0.061 1.3E-06 42.4 21.6 132 103-235 179-315 (366)
220 PF03704 BTAD: Bacterial trans 97.3 0.0069 1.5E-07 44.5 10.8 94 275-368 2-122 (146)
221 PF13281 DUF4071: Domain of un 97.3 0.097 2.1E-06 44.4 19.9 167 67-235 142-334 (374)
222 PF13512 TPR_18: Tetratricopep 97.2 0.012 2.7E-07 41.8 10.8 50 322-371 21-76 (142)
223 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.12 2.5E-06 44.2 32.2 125 279-405 400-530 (660)
224 COG1729 Uncharacterized protei 97.1 0.0093 2E-07 47.3 10.4 85 287-371 152-244 (262)
225 PF13424 TPR_12: Tetratricopep 97.1 0.0018 4E-08 41.4 5.6 27 277-303 6-32 (78)
226 KOG2280 Vacuolar assembly/sort 97.1 0.22 4.8E-06 45.4 29.1 326 60-402 426-795 (829)
227 COG3898 Uncharacterized membra 97.0 0.18 3.9E-06 42.4 30.1 281 44-339 97-391 (531)
228 PF12921 ATP13: Mitochondrial 96.9 0.042 9.1E-07 38.7 11.0 26 137-162 3-28 (126)
229 PF12921 ATP13: Mitochondrial 96.9 0.02 4.4E-07 40.3 9.4 99 30-148 1-100 (126)
230 KOG1585 Protein required for f 96.8 0.16 3.4E-06 39.7 15.1 25 174-198 34-58 (308)
231 KOG4555 TPR repeat-containing 96.8 0.026 5.7E-07 39.0 8.9 50 321-370 53-105 (175)
232 PF09205 DUF1955: Domain of un 96.7 0.11 2.3E-06 36.3 13.0 139 251-408 12-151 (161)
233 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.022 4.7E-07 49.0 10.2 64 275-340 74-141 (453)
234 COG3118 Thioredoxin domain-con 96.7 0.24 5.2E-06 40.0 17.5 121 216-339 144-264 (304)
235 PF13428 TPR_14: Tetratricopep 96.7 0.0066 1.4E-07 33.6 4.9 41 343-384 2-42 (44)
236 KOG0543 FKBP-type peptidyl-pro 96.7 0.049 1.1E-06 45.8 11.8 97 66-164 257-354 (397)
237 COG3118 Thioredoxin domain-con 96.7 0.25 5.5E-06 39.9 18.2 145 108-255 141-286 (304)
238 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.012 2.6E-07 50.5 8.2 98 308-409 72-177 (453)
239 KOG2610 Uncharacterized conser 96.6 0.12 2.6E-06 42.4 13.1 151 183-337 115-273 (491)
240 KOG1941 Acetylcholine receptor 96.6 0.12 2.5E-06 42.9 13.1 223 147-369 17-273 (518)
241 KOG2610 Uncharacterized conser 96.6 0.11 2.3E-06 42.7 12.6 153 41-196 113-272 (491)
242 KOG1941 Acetylcholine receptor 96.6 0.34 7.5E-06 40.3 18.9 165 174-338 86-273 (518)
243 COG1729 Uncharacterized protei 96.6 0.071 1.5E-06 42.5 11.3 89 182-270 152-244 (262)
244 PF04053 Coatomer_WDAD: Coatom 96.5 0.12 2.6E-06 45.5 13.8 105 69-200 298-402 (443)
245 PF13428 TPR_14: Tetratricopep 96.5 0.0067 1.4E-07 33.6 4.2 33 378-410 2-34 (44)
246 PF13512 TPR_18: Tetratricopep 96.5 0.18 3.9E-06 36.1 12.2 56 181-236 20-77 (142)
247 COG4105 ComL DNA uptake lipopr 96.5 0.31 6.7E-06 38.6 19.6 53 317-369 173-231 (254)
248 KOG4555 TPR repeat-containing 96.5 0.14 3E-06 35.6 10.9 89 40-129 52-143 (175)
249 COG4649 Uncharacterized protei 96.5 0.22 4.8E-06 36.7 13.6 138 31-169 59-200 (221)
250 PF04053 Coatomer_WDAD: Coatom 96.4 0.12 2.6E-06 45.5 13.4 158 74-267 269-428 (443)
251 PF07079 DUF1347: Protein of u 96.4 0.54 1.2E-05 40.5 33.1 223 151-382 274-530 (549)
252 PF07719 TPR_2: Tetratricopept 96.3 0.015 3.3E-07 29.8 4.5 32 379-410 3-34 (34)
253 PF09205 DUF1955: Domain of un 96.3 0.23 5E-06 34.7 12.4 139 8-168 14-152 (161)
254 PRK11906 transcriptional regul 96.2 0.73 1.6E-05 40.1 16.4 79 49-129 322-400 (458)
255 PF04184 ST7: ST7 protein; In 96.2 0.6 1.3E-05 40.9 15.6 52 317-368 265-321 (539)
256 smart00299 CLH Clathrin heavy 96.2 0.3 6.5E-06 35.5 15.3 41 212-253 13-53 (140)
257 PF04840 Vps16_C: Vps16, C-ter 96.2 0.64 1.4E-05 39.1 31.1 82 210-301 181-262 (319)
258 PRK11906 transcriptional regul 96.0 0.25 5.3E-06 42.9 12.5 157 242-402 252-432 (458)
259 PF08631 SPO22: Meiosis protei 95.9 0.77 1.7E-05 38.0 25.9 123 7-130 4-150 (278)
260 PF08631 SPO22: Meiosis protei 95.9 0.78 1.7E-05 38.0 25.4 96 173-270 86-186 (278)
261 KOG1585 Protein required for f 95.9 0.63 1.4E-05 36.6 17.0 206 103-335 33-251 (308)
262 KOG1258 mRNA processing protei 95.9 1.2 2.6E-05 39.9 31.8 382 16-409 32-473 (577)
263 PF00515 TPR_1: Tetratricopept 95.9 0.021 4.6E-07 29.3 3.8 31 379-409 3-33 (34)
264 PF13176 TPR_7: Tetratricopept 95.8 0.025 5.4E-07 29.6 3.9 23 345-367 2-24 (36)
265 PF13431 TPR_17: Tetratricopep 95.7 0.014 3E-07 30.1 2.6 32 365-397 2-33 (34)
266 COG0457 NrfG FOG: TPR repeat [ 95.7 0.85 1.8E-05 36.4 28.6 221 149-371 36-265 (291)
267 smart00299 CLH Clathrin heavy 95.5 0.61 1.3E-05 33.8 15.1 14 80-93 21-34 (140)
268 KOG4234 TPR repeat-containing 95.5 0.1 2.2E-06 39.4 7.3 88 284-372 103-198 (271)
269 KOG3941 Intermediate in Toll s 95.3 0.25 5.4E-06 39.6 9.1 105 29-152 65-174 (406)
270 PF07035 Mic1: Colon cancer-as 95.2 0.88 1.9E-05 33.8 14.6 32 227-258 15-46 (167)
271 COG5107 RNA14 Pre-mRNA 3'-end 95.2 1.8 4E-05 37.4 22.5 129 173-304 399-530 (660)
272 PF13174 TPR_6: Tetratricopept 95.2 0.045 9.9E-07 27.7 3.6 31 380-410 3-33 (33)
273 COG3629 DnrI DNA-binding trans 95.1 0.33 7.2E-06 39.4 9.9 78 102-180 154-236 (280)
274 COG2976 Uncharacterized protei 95.1 1.1 2.3E-05 34.0 13.1 145 226-372 39-189 (207)
275 KOG2114 Vacuolar assembly/sort 95.1 3 6.6E-05 39.2 25.5 52 317-368 711-762 (933)
276 KOG3941 Intermediate in Toll s 95.1 0.28 6.1E-06 39.3 9.0 88 203-290 64-172 (406)
277 COG3629 DnrI DNA-binding trans 95.0 0.28 6.1E-06 39.8 9.1 82 30-112 152-238 (280)
278 COG4649 Uncharacterized protei 95.0 1 2.2E-05 33.3 13.8 136 65-201 58-197 (221)
279 PF10602 RPN7: 26S proteasome 94.9 0.81 1.8E-05 34.7 11.0 62 138-199 38-101 (177)
280 PF10300 DUF3808: Protein of u 94.8 3 6.5E-05 37.5 24.2 161 105-268 192-374 (468)
281 COG0457 NrfG FOG: TPR repeat [ 94.7 1.7 3.7E-05 34.5 29.1 117 45-162 37-156 (291)
282 PF13176 TPR_7: Tetratricopept 94.7 0.083 1.8E-06 27.6 3.8 25 379-403 1-25 (36)
283 PF13181 TPR_8: Tetratricopept 94.6 0.11 2.4E-06 26.5 4.1 31 379-409 3-33 (34)
284 KOG1920 IkappaB kinase complex 94.3 5.9 0.00013 39.1 26.8 107 279-402 942-1051(1265)
285 PF10602 RPN7: 26S proteasome 94.3 0.68 1.5E-05 35.1 9.4 62 68-129 38-101 (177)
286 PF04184 ST7: ST7 protein; In 94.3 3.5 7.6E-05 36.4 16.3 60 279-338 262-322 (539)
287 PF04097 Nic96: Nup93/Nic96; 94.2 4.9 0.00011 37.7 21.6 90 315-404 418-532 (613)
288 COG4785 NlpI Lipoprotein NlpI, 94.1 2.1 4.6E-05 33.1 15.2 31 342-372 237-267 (297)
289 cd00923 Cyt_c_Oxidase_Va Cytoc 94.1 0.32 6.9E-06 31.8 5.9 49 357-405 22-70 (103)
290 KOG1920 IkappaB kinase complex 94.0 6.8 0.00015 38.7 29.7 87 244-340 942-1028(1265)
291 KOG1550 Extracellular protein 93.9 5.3 0.00012 37.0 23.7 276 117-407 228-539 (552)
292 KOG2114 Vacuolar assembly/sort 93.9 5.9 0.00013 37.4 21.6 140 5-162 377-516 (933)
293 KOG4570 Uncharacterized conser 93.8 1.5 3.2E-05 36.0 10.5 101 203-305 61-164 (418)
294 COG4785 NlpI Lipoprotein NlpI, 93.7 2.6 5.6E-05 32.7 16.2 181 219-408 78-268 (297)
295 KOG4648 Uncharacterized conser 93.7 0.3 6.5E-06 40.3 6.6 91 282-376 103-197 (536)
296 COG2976 Uncharacterized protei 93.7 2.4 5.2E-05 32.2 14.4 86 319-406 97-188 (207)
297 cd00923 Cyt_c_Oxidase_Va Cytoc 93.5 0.85 1.8E-05 29.9 7.1 40 263-302 29-68 (103)
298 PF07035 Mic1: Colon cancer-as 93.5 2.4 5.2E-05 31.6 14.7 37 52-88 15-51 (167)
299 PF00515 TPR_1: Tetratricopept 93.3 0.21 4.5E-06 25.5 3.7 29 343-371 2-30 (34)
300 PF02284 COX5A: Cytochrome c o 93.3 0.46 1E-05 31.5 5.8 48 359-406 27-74 (108)
301 PF02284 COX5A: Cytochrome c o 93.2 1.6 3.6E-05 29.0 8.8 41 263-303 32-72 (108)
302 PF07719 TPR_2: Tetratricopept 93.2 0.22 4.9E-06 25.3 3.7 29 343-371 2-30 (34)
303 PRK15180 Vi polysaccharide bio 92.9 6.1 0.00013 34.7 13.7 122 182-306 300-421 (831)
304 KOG1586 Protein required for f 92.8 3.9 8.5E-05 32.2 16.4 14 255-268 87-100 (288)
305 PF13431 TPR_17: Tetratricopep 92.7 0.24 5.2E-06 25.4 3.3 31 20-51 3-33 (34)
306 PF11207 DUF2989: Protein of u 92.5 1.7 3.6E-05 33.4 8.6 79 41-121 117-198 (203)
307 COG3947 Response regulator con 92.4 5.3 0.00011 32.6 14.8 60 344-404 281-340 (361)
308 PRK11619 lytic murein transgly 92.4 10 0.00022 35.8 30.8 308 42-369 44-373 (644)
309 PF13170 DUF4003: Protein of u 92.1 6.2 0.00013 33.0 20.2 129 118-248 79-224 (297)
310 KOG1550 Extracellular protein 91.9 10 0.00023 35.1 24.8 178 12-201 228-427 (552)
311 PF00637 Clathrin: Region in C 91.9 0.15 3.3E-06 37.2 2.7 83 2-91 13-95 (143)
312 PF09613 HrpB1_HrpK: Bacterial 91.6 4.2 9.2E-05 30.0 13.2 15 78-92 56-70 (160)
313 PF11207 DUF2989: Protein of u 91.6 1.8 3.9E-05 33.2 7.9 79 76-156 117-198 (203)
314 PF13374 TPR_10: Tetratricopep 91.5 0.56 1.2E-05 25.1 4.2 28 378-405 3-30 (42)
315 KOG0276 Vesicle coat complex C 91.4 6.9 0.00015 35.5 12.3 100 146-266 647-746 (794)
316 PF00637 Clathrin: Region in C 91.3 0.21 4.5E-06 36.5 2.9 83 247-336 13-95 (143)
317 KOG0276 Vesicle coat complex C 90.9 5.5 0.00012 36.1 11.2 151 112-302 597-747 (794)
318 PF04097 Nic96: Nup93/Nic96; 90.8 15 0.00032 34.7 22.7 89 142-235 264-356 (613)
319 PF09613 HrpB1_HrpK: Bacterial 90.7 5.3 0.00011 29.5 13.0 21 320-340 53-73 (160)
320 COG1747 Uncharacterized N-term 90.7 12 0.00026 33.4 24.1 162 204-372 64-235 (711)
321 KOG4234 TPR repeat-containing 90.7 6.3 0.00014 30.3 9.9 89 146-235 105-197 (271)
322 PF07721 TPR_4: Tetratricopept 90.7 0.43 9.4E-06 22.6 2.7 21 381-401 5-25 (26)
323 PF13170 DUF4003: Protein of u 90.5 9.3 0.0002 32.0 20.4 130 188-319 79-225 (297)
324 smart00028 TPR Tetratricopepti 90.2 0.64 1.4E-05 22.6 3.5 25 345-369 4-28 (34)
325 PF13174 TPR_6: Tetratricopept 90.2 0.47 1E-05 23.7 2.9 27 345-371 3-29 (33)
326 KOG0890 Protein kinase of the 90.2 31 0.00067 37.4 24.1 312 5-340 1392-1731(2382)
327 KOG2471 TPR repeat-containing 90.1 13 0.00028 33.0 15.2 107 214-322 248-380 (696)
328 COG4455 ImpE Protein of avirul 90.0 2.2 4.8E-05 33.0 7.1 72 3-75 8-81 (273)
329 KOG4648 Uncharacterized conser 89.9 2.1 4.6E-05 35.6 7.5 89 5-95 106-194 (536)
330 PF02259 FAT: FAT domain; Int 89.7 12 0.00027 32.2 24.3 65 205-269 145-212 (352)
331 KOG4570 Uncharacterized conser 89.7 2.7 5.8E-05 34.6 7.8 99 271-371 59-164 (418)
332 PRK09687 putative lyase; Provi 89.7 11 0.00023 31.3 29.2 233 135-388 36-278 (280)
333 PF02259 FAT: FAT domain; Int 89.5 13 0.00028 32.0 23.1 192 107-304 4-212 (352)
334 PF13374 TPR_10: Tetratricopep 89.4 1.2 2.6E-05 23.7 4.3 28 32-59 3-30 (42)
335 PF13181 TPR_8: Tetratricopept 89.3 1.1 2.4E-05 22.6 3.9 29 343-371 2-30 (34)
336 PF07163 Pex26: Pex26 protein; 89.3 9.3 0.0002 31.1 10.3 87 143-229 90-181 (309)
337 KOG1464 COP9 signalosome, subu 88.6 12 0.00025 30.4 18.0 201 96-297 21-252 (440)
338 TIGR02561 HrpB1_HrpK type III 88.5 7.8 0.00017 28.2 11.9 19 76-94 54-72 (153)
339 TIGR03504 FimV_Cterm FimV C-te 88.3 1.4 3E-05 24.2 3.8 26 347-372 4-29 (44)
340 KOG0890 Protein kinase of the 88.2 43 0.00093 36.4 24.9 321 36-372 1388-1732(2382)
341 COG2909 MalT ATP-dependent tra 88.0 26 0.00057 33.8 27.1 223 180-402 424-684 (894)
342 PF14853 Fis1_TPR_C: Fis1 C-te 88.0 1.8 3.9E-05 25.0 4.4 38 345-384 4-41 (53)
343 KOG4077 Cytochrome c oxidase, 88.0 2.4 5.2E-05 29.5 5.5 47 360-406 67-113 (149)
344 PF13929 mRNA_stabil: mRNA sta 87.9 14 0.0003 30.4 15.5 63 133-195 199-262 (292)
345 PF06552 TOM20_plant: Plant sp 87.8 8.7 0.00019 29.0 8.8 28 358-387 96-123 (186)
346 TIGR02561 HrpB1_HrpK type III 87.7 8.8 0.00019 27.9 11.9 51 253-305 22-73 (153)
347 TIGR03504 FimV_Cterm FimV C-te 87.6 1.9 4.1E-05 23.7 4.1 23 142-164 5-27 (44)
348 PF07163 Pex26: Pex26 protein; 87.4 10 0.00023 30.8 9.5 89 36-124 88-181 (309)
349 KOG4077 Cytochrome c oxidase, 86.5 6.8 0.00015 27.4 7.0 41 263-303 71-111 (149)
350 KOG2063 Vacuolar assembly/sort 86.5 34 0.00074 33.4 22.2 115 174-288 507-638 (877)
351 PF13929 mRNA_stabil: mRNA sta 86.3 17 0.00038 29.9 15.8 65 237-301 198-263 (292)
352 COG4455 ImpE Protein of avirul 86.2 8.4 0.00018 30.1 8.1 53 74-127 9-61 (273)
353 KOG1464 COP9 signalosome, subu 86.1 17 0.00036 29.5 18.3 207 61-267 21-257 (440)
354 KOG2471 TPR repeat-containing 86.1 24 0.00053 31.4 14.1 43 346-389 339-381 (696)
355 PF10345 Cohesin_load: Cohesin 86.0 31 0.00068 32.6 37.6 396 8-405 72-605 (608)
356 COG3947 Response regulator con 85.1 20 0.00043 29.5 16.0 58 209-267 282-339 (361)
357 KOG0545 Aryl-hydrocarbon recep 84.8 13 0.00028 29.7 8.7 96 276-371 178-293 (329)
358 PF07575 Nucleopor_Nup85: Nup8 83.8 38 0.00082 31.7 17.6 31 353-383 506-536 (566)
359 KOG2066 Vacuolar assembly/sort 83.8 41 0.00088 32.0 26.6 150 73-233 363-532 (846)
360 KOG2066 Vacuolar assembly/sort 83.6 41 0.0009 32.0 29.2 102 3-113 363-467 (846)
361 KOG3364 Membrane protein invol 83.3 8.9 0.00019 27.3 6.6 64 308-371 29-100 (149)
362 PRK09687 putative lyase; Provi 82.9 26 0.00056 29.1 27.6 136 170-321 141-277 (280)
363 PRK11619 lytic murein transgly 82.3 47 0.001 31.6 35.4 73 72-150 105-177 (644)
364 KOG4507 Uncharacterized conser 82.2 7.1 0.00015 35.4 7.2 96 288-384 619-717 (886)
365 COG0735 Fur Fe2+/Zn2+ uptake r 81.9 15 0.00033 26.8 7.9 64 17-81 7-70 (145)
366 COG0790 FOG: TPR repeat, SEL1 81.9 29 0.00063 29.0 19.5 83 183-271 53-143 (292)
367 PF09986 DUF2225: Uncharacteri 80.8 16 0.00034 28.9 8.2 24 383-406 171-194 (214)
368 PF10579 Rapsyn_N: Rapsyn N-te 80.2 7.3 0.00016 24.6 4.8 46 43-88 18-65 (80)
369 KOG4642 Chaperone-dependent E3 79.0 31 0.00068 27.6 11.1 48 149-198 23-71 (284)
370 PF11846 DUF3366: Domain of un 79.0 7.1 0.00015 30.2 5.8 32 374-405 141-172 (193)
371 PF08424 NRDE-2: NRDE-2, neces 78.9 40 0.00087 28.7 15.9 24 350-373 162-185 (321)
372 PF06552 TOM20_plant: Plant sp 77.9 28 0.00061 26.4 10.9 41 257-305 96-136 (186)
373 PF09868 DUF2095: Uncharacteri 77.6 9.7 0.00021 25.9 5.1 24 38-61 68-91 (128)
374 KOG2063 Vacuolar assembly/sort 77.5 76 0.0017 31.2 20.3 116 33-148 506-638 (877)
375 cd00280 TRFH Telomeric Repeat 77.5 29 0.00063 26.4 9.1 66 82-150 85-157 (200)
376 PF14689 SPOB_a: Sensor_kinase 76.9 9.4 0.0002 22.9 4.6 21 348-368 29-49 (62)
377 PF09670 Cas_Cas02710: CRISPR- 76.6 46 0.001 29.2 10.5 50 43-93 143-196 (379)
378 TIGR02508 type_III_yscG type I 76.5 20 0.00044 24.0 7.5 51 75-131 48-98 (115)
379 PF14689 SPOB_a: Sensor_kinase 76.0 12 0.00026 22.5 4.9 45 13-59 7-51 (62)
380 PF09670 Cas_Cas02710: CRISPR- 75.9 54 0.0012 28.8 10.8 56 249-305 139-198 (379)
381 KOG4507 Uncharacterized conser 75.4 26 0.00056 32.1 8.5 85 219-304 620-704 (886)
382 cd00280 TRFH Telomeric Repeat 75.1 33 0.00072 26.1 7.8 22 73-94 118-139 (200)
383 KOG1308 Hsp70-interacting prot 74.9 2.1 4.6E-05 35.6 1.9 96 42-139 125-220 (377)
384 PF12862 Apc5: Anaphase-promot 74.2 23 0.00049 23.5 6.6 19 352-370 51-69 (94)
385 PF04190 DUF410: Protein of un 74.0 48 0.001 27.2 17.5 29 309-337 88-116 (260)
386 PF10579 Rapsyn_N: Rapsyn N-te 73.6 11 0.00025 23.8 4.4 46 354-399 18-65 (80)
387 COG4003 Uncharacterized protei 73.2 13 0.00029 23.4 4.5 26 36-61 36-61 (98)
388 KOG4567 GTPase-activating prot 73.1 54 0.0012 27.4 9.5 43 262-304 264-306 (370)
389 PF11848 DUF3368: Domain of un 72.6 15 0.00032 20.7 4.5 31 43-73 14-44 (48)
390 PRK10941 hypothetical protein; 72.4 35 0.00075 28.2 8.2 74 314-387 184-261 (269)
391 PRK15180 Vi polysaccharide bio 72.3 73 0.0016 28.6 27.4 121 8-131 301-421 (831)
392 PF10366 Vps39_1: Vacuolar sor 71.2 30 0.00066 23.7 7.0 28 343-370 40-67 (108)
393 PF08424 NRDE-2: NRDE-2, neces 71.1 65 0.0014 27.5 15.3 107 19-128 8-129 (321)
394 PF13762 MNE1: Mitochondrial s 71.0 38 0.00082 24.7 10.2 50 100-149 78-128 (145)
395 PF10345 Cohesin_load: Cohesin 70.8 98 0.0021 29.4 37.9 186 12-198 37-252 (608)
396 KOG4642 Chaperone-dependent E3 70.2 55 0.0012 26.3 11.5 113 44-160 23-141 (284)
397 KOG1308 Hsp70-interacting prot 69.2 3.6 7.9E-05 34.3 2.0 117 286-405 124-243 (377)
398 PF10255 Paf67: RNA polymerase 68.4 15 0.00032 32.2 5.6 60 277-336 123-189 (404)
399 KOG4567 GTPase-activating prot 68.2 71 0.0015 26.8 9.2 71 51-126 263-343 (370)
400 PF11846 DUF3366: Domain of un 66.4 41 0.00089 26.0 7.4 32 203-234 141-172 (193)
401 COG2909 MalT ATP-dependent tra 66.0 1.4E+02 0.003 29.3 31.8 225 110-337 424-685 (894)
402 KOG2396 HAT (Half-A-TPR) repea 66.0 1E+02 0.0023 27.9 37.4 90 314-404 463-557 (568)
403 KOG0292 Vesicle coat complex C 65.1 1.1E+02 0.0025 29.9 10.6 71 252-337 654-724 (1202)
404 PRK10564 maltose regulon perip 65.1 17 0.00038 30.0 5.1 36 103-138 259-294 (303)
405 COG0735 Fur Fe2+/Zn2+ uptake r 64.3 54 0.0012 24.0 7.7 62 263-325 8-69 (145)
406 PF13762 MNE1: Mitochondrial s 64.2 54 0.0012 24.0 10.6 79 35-113 43-127 (145)
407 PF11848 DUF3368: Domain of un 64.2 24 0.00051 19.8 4.9 35 351-385 11-45 (48)
408 PF14853 Fis1_TPR_C: Fis1 C-te 63.8 26 0.00057 20.2 5.5 22 317-338 7-28 (53)
409 PF10255 Paf67: RNA polymerase 63.5 1.1E+02 0.0023 27.1 10.3 56 314-369 125-191 (404)
410 PF09986 DUF2225: Uncharacteri 63.2 74 0.0016 25.2 9.1 28 345-372 168-195 (214)
411 PF11817 Foie-gras_1: Foie gra 62.6 41 0.00089 27.3 7.0 21 317-337 184-204 (247)
412 PRK10564 maltose regulon perip 62.4 18 0.0004 29.9 4.8 30 34-63 260-289 (303)
413 PF11817 Foie-gras_1: Foie gra 61.6 53 0.0011 26.7 7.4 59 69-127 181-244 (247)
414 PF11663 Toxin_YhaV: Toxin wit 60.9 15 0.00032 26.2 3.4 19 47-65 111-129 (140)
415 PF08311 Mad3_BUB1_I: Mad3/BUB 60.4 58 0.0013 23.1 8.9 46 358-403 79-125 (126)
416 KOG0403 Neoplastic transformat 59.9 1.3E+02 0.0028 26.9 19.2 59 314-372 512-573 (645)
417 KOG0376 Serine-threonine phosp 59.9 15 0.00033 32.4 4.1 103 283-389 11-117 (476)
418 TIGR02508 type_III_yscG type I 59.8 51 0.0011 22.2 8.5 59 319-380 47-105 (115)
419 PF12862 Apc5: Anaphase-promot 59.5 49 0.0011 21.9 6.3 53 7-59 9-69 (94)
420 KOG2396 HAT (Half-A-TPR) repea 59.1 1.4E+02 0.0031 27.1 33.1 71 333-405 450-524 (568)
421 KOG0376 Serine-threonine phosp 58.9 36 0.00078 30.3 6.1 52 41-94 14-66 (476)
422 PF10366 Vps39_1: Vacuolar sor 58.3 58 0.0013 22.4 6.6 26 69-94 42-67 (108)
423 COG0790 FOG: TPR repeat, SEL1 58.3 1.1E+02 0.0024 25.5 23.5 25 221-245 252-276 (292)
424 KOG0551 Hsp90 co-chaperone CNS 58.1 63 0.0014 27.4 7.0 93 277-369 82-180 (390)
425 COG4976 Predicted methyltransf 58.1 25 0.00054 27.9 4.5 52 321-372 5-59 (287)
426 PF11663 Toxin_YhaV: Toxin wit 57.3 17 0.00038 25.8 3.3 31 288-320 107-137 (140)
427 KOG1839 Uncharacterized protei 57.1 2.3E+02 0.0049 29.3 11.6 25 29-53 971-995 (1236)
428 PF14561 TPR_20: Tetratricopep 56.6 54 0.0012 21.5 8.9 53 28-80 19-72 (90)
429 PHA02875 ankyrin repeat protei 56.6 1.5E+02 0.0031 26.4 15.9 208 7-240 10-229 (413)
430 KOG0686 COP9 signalosome, subu 56.0 1.4E+02 0.0031 26.2 14.2 22 70-91 154-175 (466)
431 PF02184 HAT: HAT (Half-A-TPR) 55.6 21 0.00046 18.0 2.6 26 357-384 2-27 (32)
432 PF07720 TPR_3: Tetratricopept 55.2 29 0.00064 18.0 4.4 18 382-399 6-23 (36)
433 KOG3364 Membrane protein invol 54.7 79 0.0017 22.8 8.5 23 248-270 78-100 (149)
434 COG5108 RPO41 Mitochondrial DN 54.3 1.4E+02 0.0031 28.2 9.1 47 36-82 33-81 (1117)
435 COG5108 RPO41 Mitochondrial DN 54.3 1.3E+02 0.0029 28.4 8.9 91 71-164 33-131 (1117)
436 KOG4279 Serine/threonine prote 54.3 2.1E+02 0.0046 27.6 15.0 118 189-311 181-320 (1226)
437 KOG1586 Protein required for f 54.2 1.1E+02 0.0025 24.5 20.3 25 178-202 161-185 (288)
438 PHA02875 ankyrin repeat protei 54.1 1.6E+02 0.0035 26.2 13.0 212 144-378 7-231 (413)
439 PF12968 DUF3856: Domain of Un 53.9 75 0.0016 22.3 6.4 17 386-402 109-125 (144)
440 PF11838 ERAP1_C: ERAP1-like C 53.8 1.4E+02 0.003 25.4 13.6 112 12-126 146-262 (324)
441 KOG2422 Uncharacterized conser 53.5 1.9E+02 0.0041 26.9 15.6 55 284-338 350-405 (665)
442 PF07064 RIC1: RIC1; InterPro 52.2 1.3E+02 0.0029 24.7 16.0 63 347-409 184-252 (258)
443 PRK09462 fur ferric uptake reg 51.6 94 0.002 22.8 7.9 61 21-82 7-68 (148)
444 PF01475 FUR: Ferric uptake re 51.1 58 0.0013 22.7 5.4 47 346-392 11-57 (120)
445 cd08819 CARD_MDA5_2 Caspase ac 51.0 68 0.0015 21.0 7.3 31 325-356 50-80 (88)
446 PF09477 Type_III_YscG: Bacter 51.0 78 0.0017 21.7 9.5 78 46-130 21-98 (116)
447 PRK13184 pknD serine/threonine 50.9 2.8E+02 0.0061 28.0 28.9 178 185-370 670-868 (932)
448 PRK11639 zinc uptake transcrip 50.6 1.1E+02 0.0023 23.2 7.5 57 302-359 17-77 (169)
449 KOG0991 Replication factor C, 50.5 1.3E+02 0.0029 24.2 13.1 124 143-275 137-272 (333)
450 PRK13342 recombination factor 50.4 1.9E+02 0.0041 25.9 18.6 16 114-129 187-202 (413)
451 KOG4521 Nuclear pore complex, 50.2 3E+02 0.0066 28.3 15.6 127 278-406 985-1132(1480)
452 PF11123 DNA_Packaging_2: DNA 50.1 61 0.0013 20.2 4.4 32 81-113 12-43 (82)
453 cd07153 Fur_like Ferric uptake 49.9 65 0.0014 22.2 5.5 46 37-82 6-51 (116)
454 cd07153 Fur_like Ferric uptake 49.8 74 0.0016 22.0 5.7 41 351-391 9-49 (116)
455 smart00386 HAT HAT (Half-A-TPR 48.8 31 0.00068 16.5 4.1 28 10-38 1-28 (33)
456 PF09454 Vps23_core: Vps23 cor 48.6 60 0.0013 19.8 4.3 31 31-61 8-38 (65)
457 PF03745 DUF309: Domain of unk 47.3 62 0.0013 19.5 5.7 50 351-400 8-62 (62)
458 PRK09857 putative transposase; 47.0 1.7E+02 0.0038 24.6 8.7 68 67-135 207-274 (292)
459 KOG1839 Uncharacterized protei 46.7 3.6E+02 0.0078 28.1 12.2 102 133-234 970-1085(1236)
460 PF02607 B12-binding_2: B12 bi 46.5 48 0.001 20.9 4.0 37 353-389 12-48 (79)
461 PRK13800 putative oxidoreducta 46.1 3.3E+02 0.0072 27.5 30.2 125 239-370 754-880 (897)
462 PF14561 TPR_20: Tetratricopep 45.9 85 0.0018 20.6 8.7 23 211-233 27-49 (90)
463 PF12926 MOZART2: Mitotic-spin 45.8 83 0.0018 20.5 8.0 43 122-164 29-71 (88)
464 PRK11639 zinc uptake transcrip 45.3 1.3E+02 0.0029 22.7 7.8 61 22-83 17-77 (169)
465 KOG0991 Replication factor C, 44.6 1.7E+02 0.0036 23.7 12.7 35 341-376 238-272 (333)
466 COG1747 Uncharacterized N-term 44.3 2.6E+02 0.0056 25.7 30.3 95 65-164 65-159 (711)
467 PF07575 Nucleopor_Nup85: Nup8 44.0 2.8E+02 0.0061 26.1 19.7 24 68-91 150-173 (566)
468 PF01475 FUR: Ferric uptake re 43.6 1.1E+02 0.0023 21.4 5.8 49 34-82 10-58 (120)
469 PF14669 Asp_Glu_race_2: Putat 43.6 1.5E+02 0.0033 23.0 15.3 179 24-231 1-206 (233)
470 PF12926 MOZART2: Mitotic-spin 43.5 91 0.002 20.3 7.7 44 52-95 29-72 (88)
471 PF00244 14-3-3: 14-3-3 protei 43.2 1.8E+02 0.0038 23.6 11.7 166 69-234 4-197 (236)
472 PF07827 KNTase_C: KNTase C-te 43.2 1.1E+02 0.0023 22.2 5.3 15 273-287 15-29 (143)
473 KOG0686 COP9 signalosome, subu 42.7 2.4E+02 0.0052 24.9 14.3 62 173-234 152-215 (466)
474 KOG2300 Uncharacterized conser 42.6 2.7E+02 0.0058 25.4 35.1 361 7-369 58-512 (629)
475 smart00804 TAP_C C-terminal do 42.3 25 0.00055 21.2 2.0 21 10-30 39-60 (63)
476 PRK09462 fur ferric uptake reg 42.0 1.4E+02 0.003 21.9 7.4 35 151-185 32-66 (148)
477 PRK13342 recombination factor 42.0 2.6E+02 0.0056 25.1 19.4 32 150-181 244-275 (413)
478 KOG2659 LisH motif-containing 41.3 1.8E+02 0.004 23.2 9.3 113 272-386 22-147 (228)
479 PRK10941 hypothetical protein; 41.2 2.1E+02 0.0045 23.8 10.4 58 212-270 187-244 (269)
480 KOG3677 RNA polymerase I-assoc 41.0 2.6E+02 0.0056 24.8 9.9 61 68-128 237-299 (525)
481 PF08311 Mad3_BUB1_I: Mad3/BUB 39.8 1.4E+02 0.003 21.3 9.1 43 294-336 81-124 (126)
482 PRK12798 chemotaxis protein; R 39.7 2.7E+02 0.0059 24.7 21.4 49 114-162 125-174 (421)
483 KOG2034 Vacuolar sorting prote 39.7 3.9E+02 0.0085 26.5 28.8 50 4-59 366-417 (911)
484 PF13934 ELYS: Nuclear pore co 39.1 2E+02 0.0044 23.0 14.6 117 244-371 79-198 (226)
485 PF09868 DUF2095: Uncharacteri 38.8 1.3E+02 0.0027 20.9 4.9 33 72-105 67-99 (128)
486 PF15297 CKAP2_C: Cytoskeleton 38.7 2.6E+02 0.0056 24.1 8.7 46 343-388 141-186 (353)
487 PRK09857 putative transposase; 38.6 2.4E+02 0.0052 23.8 8.9 66 104-170 209-274 (292)
488 KOG0292 Vesicle coat complex C 38.4 2.4E+02 0.0052 27.9 8.3 132 39-200 651-782 (1202)
489 PRK12798 chemotaxis protein; R 37.7 3E+02 0.0064 24.5 20.6 153 149-305 125-286 (421)
490 KOG2168 Cullins [Cell cycle co 37.6 4.1E+02 0.009 26.2 22.8 24 2-25 331-354 (835)
491 KOG0551 Hsp90 co-chaperone CNS 36.9 1.3E+02 0.0027 25.7 5.7 94 311-405 81-181 (390)
492 PF09477 Type_III_YscG: Bacter 35.4 1.5E+02 0.0032 20.4 9.9 19 252-270 80-98 (116)
493 KOG3824 Huntingtin interacting 35.3 82 0.0018 26.4 4.4 51 321-371 126-179 (472)
494 PF13934 ELYS: Nuclear pore co 34.4 2.4E+02 0.0053 22.6 16.7 97 216-323 88-184 (226)
495 smart00544 MA3 Domain in DAP-5 33.8 1.6E+02 0.0034 20.2 10.3 23 281-303 7-29 (113)
496 PF10963 DUF2765: Protein of u 33.5 1.4E+02 0.003 19.4 5.2 59 307-370 12-71 (83)
497 KOG3636 Uncharacterized conser 33.4 3.6E+02 0.0077 24.2 8.6 97 52-149 169-273 (669)
498 PF05944 Phage_term_smal: Phag 33.2 1.9E+02 0.004 20.9 8.4 29 68-96 50-78 (132)
499 COG4976 Predicted methyltransf 32.9 1.3E+02 0.0029 24.1 5.0 55 5-60 4-58 (287)
500 PF11768 DUF3312: Protein of u 31.9 4.2E+02 0.0092 24.6 10.0 123 2-131 414-537 (545)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.8e-64 Score=464.79 Aligned_cols=404 Identities=16% Similarity=0.246 Sum_probs=389.2
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGI-SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 80 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (410)
++..|++.|++++|+++|++|.+.|+ +++..+++.++..|.+.|..++|..+++.|.. |+..+|+.++.+|++.|
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc
Confidence 46678889999999999999999984 56778888999999999999999999999864 89999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 160 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (410)
+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHH--cCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 015246 161 ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKR--KGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 238 (410)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 238 (410)
.|...|+.||..+|+.++.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+.|.+.++.
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999986 578999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 015246 239 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 318 (410)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 318 (410)
|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCChHHHHHHHHhhcc----CCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHH
Q 015246 319 DRLGKDGKIDHAINVFESMEV----KDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRR 394 (410)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 394 (410)
.+|++.|++++|.++|++|.. ++..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|..++.+|.+.|+.+
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999964 3889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCC
Q 015246 395 EAKKIQSKIRMAKIS 409 (410)
Q Consensus 395 ~a~~~~~~~~~~~~~ 409 (410)
+|.+++++|.+.|+.
T Consensus 772 ~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 772 VGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999998864
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-63 Score=461.19 Aligned_cols=405 Identities=17% Similarity=0.300 Sum_probs=313.2
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
||.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 67777777888888888888887777778888888888888888888888888888777777788888888888888888
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK--HGFVPELVTYNILIKGLCKAGRLRTARWIL 159 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (410)
+++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888887777778888888888888888888888888887765 567777778888888888888888888888
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 015246 160 KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239 (410)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (410)
+.|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 88877777777788888888888888888888888888877777787788888888888888888888888887777777
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888888888888888887777777888888888888888888888888888877777788888888888
Q ss_pred HHHccCChHHHHHHHHhhccC----CchhHHHHHHHHHh-----------------------cCChhhHHHHHHHHHHcC
Q 015246 320 RLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCK-----------------------AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~-----------------------~~~~~~A~~~~~~~~~~~ 372 (410)
+|.+.|++++|.+++.+|.+. +..+|+.++..|.+ .+..+.|..+|++|++.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 888888888888887777655 66677777654321 112356777778888778
Q ss_pred CCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 373 VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 373 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+.||..||..++.+++..++.+.+..+++.|...
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~ 876 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS 876 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC
Confidence 7888777777776666777777777777666433
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-59 Score=430.25 Aligned_cols=393 Identities=16% Similarity=0.248 Sum_probs=320.9
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+++..|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 344444444444444444443 2344444444444444444444444444444444444444444444444444444
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.. +|..+|+.++.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44444444444555566667778888899999999999999998864 48899999999999999999999999999
Q ss_pred hhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh
Q 015246 163 GDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 242 (410)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 242 (410)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+++.++.+|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999853 6899
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCCCHHHHHHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK-IGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 321 (410)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999975 68999999999999999
Q ss_pred HccCChHHHHHHHHhhccC-CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHH
Q 015246 322 GKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 400 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 400 (410)
.+.|++++|.++++++... +..+|+.++.+|...|+++.|..+++++.+.+ +.+..+|..++..|.+.|++++|.+++
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999998654 88899999999999999999999999998543 335779999999999999999999999
Q ss_pred HHHHHccC
Q 015246 401 SKIRMAKI 408 (410)
Q Consensus 401 ~~~~~~~~ 408 (410)
+.|++.|+
T Consensus 552 ~~m~~~g~ 559 (697)
T PLN03081 552 ETLKRKGL 559 (697)
T ss_pred HHHHHcCC
Confidence 99999886
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.7e-59 Score=436.95 Aligned_cols=399 Identities=21% Similarity=0.256 Sum_probs=255.6
Q ss_pred ChhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015246 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 80 (410)
Q Consensus 1 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (410)
+||.+|++.|++++|+++|++|...|+.||..+|+.++.+|+..+++..+.+++..|.+.|+.|+..+++.++.+|++.|
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 37888999999999999999998888888888777666666655555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 160 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (410)
+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.++++.|+++.+.+++.
T Consensus 237 ~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 237 DVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred CHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 5555555555554 344455555555555555555555555555555555555555555555444444444444444
Q ss_pred HHhhCCCCCcH-------------------------------HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 015246 161 ELGDSGHAPNA-------------------------------ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209 (410)
Q Consensus 161 ~~~~~~~~~~~-------------------------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (410)
.+.+.|..||. .+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|
T Consensus 313 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 44444444444 45555555555555555555555555555555555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
+.++.+|++.|+++.|.++++.+.+.|..|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence 555555555555555555555555555555555555555555555666666665555532 1222333333333333
Q ss_pred CChhHHHHHHHHHH----------------------------------hcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015246 290 GNIKGARLHLEYMN----------------------------------KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 335 (410)
Q Consensus 290 ~~~~~a~~~~~~~~----------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (410)
|+.++|..+|++|. +.|+.++..+++.++.+|.++|++++|.++|+
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 33333333333333 33334444444556677888888889999998
Q ss_pred hhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH-HccC
Q 015246 336 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR-MAKI 408 (410)
Q Consensus 336 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~ 408 (410)
.+ .+|..+|+.++.+|++.|+.++|+++|++|.+.|+.||..||..++.+|.+.|++++|.++|+.|+ +.++
T Consensus 549 ~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 549 SH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred hc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 88 679999999999999999999999999999999999999999999999999999999999999998 4443
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-58 Score=425.06 Aligned_cols=393 Identities=18% Similarity=0.277 Sum_probs=351.6
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAG-ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 80 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (410)
+|..|.+.|++++|+++|++|...+ ..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++..|++.|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 5777888888888888888887654 568888888888888888888888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC-------------------------
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE------------------------- 135 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------------------------- 135 (410)
+++.|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+
T Consensus 173 ~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 173 MLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred CHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 8888888888886 57788888888888888888888888888876665555
Q ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC
Q 015246 136 ----------LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD 205 (410)
Q Consensus 136 ----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 205 (410)
..+|+.|+.+|++.|++++|.++|+.|.. +|..+|+.++.+|.+.|++++|.++|++|.+.|+.||
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 44557788889999999999999998864 6889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 015246 206 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 285 (410)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (410)
..+|+.++.+|++.|++++|.+++..|.+.|..|+..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~ 400 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAG 400 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 4688899999999
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-----CchhHHHHHHHHHhcCChhh
Q 015246 286 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPS 360 (410)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 360 (410)
|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+. +..+|+.++.+|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 9999999999999999999999999999999999999999999999999999753 67799999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 361 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 361 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
|.+++++| ++.|+..+|..++.+|...|+.+.|..+++++.+.+++
T Consensus 481 A~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 481 AYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred HHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 99999887 68899999999999999999999999999999877765
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-57 Score=429.66 Aligned_cols=396 Identities=18% Similarity=0.274 Sum_probs=380.8
Q ss_pred ChhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015246 1 MLIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 80 (410)
Q Consensus 1 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (410)
+||..|++.|+++.|.++|++|. +||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.+|...+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 37889999999999999999997 47999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 160 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (410)
++..+.+++..+.+.|+.|+..+++.++.+|++.|+++.|.++|++|.. ||..+||.++.+|++.|++++|.++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999864 588999999999999999999999999
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 015246 161 ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240 (410)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 240 (410)
+|...|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985 478
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 015246 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 320 (410)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (410)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHH
Q 015246 321 LGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 400 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 400 (410)
|.+.|++++|.++|++|..++..+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|.+.|+.+.+.+++
T Consensus 434 y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred HHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999986 58999999999999999988888888888
Q ss_pred HHHHHccCC
Q 015246 401 SKIRMAKIS 409 (410)
Q Consensus 401 ~~~~~~~~~ 409 (410)
..+.+.|+.
T Consensus 513 ~~~~~~g~~ 521 (857)
T PLN03077 513 AHVLRTGIG 521 (857)
T ss_pred HHHHHhCCC
Confidence 888877653
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=9.9e-30 Score=245.56 Aligned_cols=387 Identities=12% Similarity=0.046 Sum_probs=238.5
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
+...|++++|.+.|+.+.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+...|++++|
T Consensus 509 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 586 (899)
T TIGR02917 509 DIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA 586 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH
Confidence 344444444444444444433 2334444444455555555555555555544432 22334444555555555555555
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015246 86 NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 165 (410)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (410)
.++++.+.... +.+...|..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 587 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 587 LAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555554433 4445555555566666666666666666555442 224445555555566666666666666655543
Q ss_pred CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 015246 166 GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 245 (410)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (410)
. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|...++.+...+ |+..++.
T Consensus 665 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~ 740 (899)
T TIGR02917 665 K-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAI 740 (899)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHH
Confidence 2 2235555556666666666666666666665554 4455556666666666677777777777666643 3335556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 015246 246 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 325 (410)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (410)
.++.++...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +++..++..+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 66666777777777777777766653 3356666777777777777777777777777653 455667777777777777
Q ss_pred ChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 326 KIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 326 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
+ .+|+..++++... ++..+..++..+...|++++|.+.++++++.+ +.++.++..++.++.+.|++++|.+++++
T Consensus 819 ~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred c-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 6677777766544 56667777778888888888888888888775 44777888888888888888888888887
Q ss_pred HH
Q 015246 403 IR 404 (410)
Q Consensus 403 ~~ 404 (410)
|.
T Consensus 897 ~~ 898 (899)
T TIGR02917 897 LL 898 (899)
T ss_pred Hh
Confidence 75
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3e-29 Score=242.19 Aligned_cols=396 Identities=14% Similarity=0.092 Sum_probs=228.4
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+..+.+.|++++|+++++.+.... +++..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 445566666666666666666543 3455566666666666666666666666665532 22344445555555555555
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC-------------------------------
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG------------------------------- 131 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------- 131 (410)
++|.+.|+++...+ +.+..++..+...+...|+.++|...++++...+
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555555555443 3344444445555555555555555555444332
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 015246 132 --FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209 (410)
Q Consensus 132 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (410)
.+.+...|..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 595 DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 22244445555555555555555555555554432 1233444445555555555555555555555443 3334445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
..+...+...|++++|.++++.+.+.+ +++...+..+...+...|++++|...++.+...+ |+..++..++.++...
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 749 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHC
Confidence 555555555555555555555555442 2344555555666666666666666666666542 3335555566666666
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 366 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 366 (410)
|++++|...++.+.+. .+.+...+..+...|...|++++|...|+++... ++.++..++..+...|+ .+|+..++
T Consensus 750 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 6666666666666654 2445666666677777777777777777766544 45566677777777777 66777777
Q ss_pred HHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 367 SCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
++.+.. +.++.++..+..++...|++++|.+.++++.+.+++
T Consensus 828 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 828 KALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 776552 345556667777778888888888888888777664
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=3.1e-23 Score=201.22 Aligned_cols=389 Identities=11% Similarity=-0.003 Sum_probs=266.5
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhH------------HH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSY------------NS 71 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~ 71 (410)
.+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+...... ...+ ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 4667899999999999999875 45788899999999999999999999999987643211 1111 22
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 72 LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 72 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
....+.+.|++++|.+.|+++.+.. +.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 3456778999999999999999875 5667788889999999999999999999998763 234555555555553 345
Q ss_pred HHHHHHHHHHHhhCCCC--------CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHH
Q 015246 152 LRTARWILKELGDSGHA--------PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 223 (410)
Q Consensus 152 ~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (410)
.++|..+++.+...... .....+..+...+...|++++|++.+++..+.. |.+...+..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 56666665544321100 001123334455556666666666666666553 334455555666666666666
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHH--------------------------------------------HHHHHhcCCHHH
Q 015246 224 EATDYMEQMVTDGVQLDIVSYNTL--------------------------------------------INLYCKEGKLEA 259 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~~~~~~ 259 (410)
+|...++++.+... .+...+..+ ...+...|+.++
T Consensus 513 ~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 66666666655321 122222222 233444555555
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhcc
Q 015246 260 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 339 (410)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (410)
|..+++. .+.+...+..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++.+..
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 5555441 13345566677788888888888888888888763 44677788888888888888888888887765
Q ss_pred C---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CC---cHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 340 K---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGV--RI---LKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 340 ~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
. +...+..+..++...|++++|.+++++++.... +| +...+..+...+...|++++|.+.+++...
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4 455666777888888888888888888876431 12 224556667788888888888888888764
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.95 E-value=2e-22 Score=184.04 Aligned_cols=395 Identities=16% Similarity=0.044 Sum_probs=285.3
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
..+.+.|++++|++.|++..+. .|+...|..+..+|.+.|++++|++.++...+.+ +.+...+..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 4577889999999999998876 5778888889999999999999999999988864 235678888999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC---------------------------CCCCC-
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---------------------------GFVPE- 135 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------~~~~~- 135 (410)
+|...|..+...+ ..+......++..+........+...++.-... ...+.
T Consensus 212 eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 212 DALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 9988887665442 111111111111111111111111111100000 00000
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCC-CCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHH
Q 015246 136 LVTYNILIKG---LCKAGRLRTARWILKELGDSG-HAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC 210 (410)
Q Consensus 136 ~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (410)
...+..+... ....+++++|.+.|+.....+ ..| ....+..+..++...|++++|+..+++..+.. +.....|.
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~ 369 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI 369 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 0000111100 122467889999999988754 223 45667778888889999999999999998874 44566788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 290 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (410)
.+..++...|++++|...++...+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCC
Confidence 88889999999999999999998863 3467888889999999999999999999998874 335667778888999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCc---hh-------HHHHHHHHHhcCChhh
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FT-------YSSMVHNLCKAKRLPS 360 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~-------~~~l~~~~~~~~~~~~ 360 (410)
++++|...+++..+. .+.+...+..+..++...|++++|...|++....++ .. +...+..+...|++++
T Consensus 448 ~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 448 SIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred CHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999875 345678889999999999999999999998766521 11 1112223334699999
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 361 ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 361 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
|.++++++++.+ +.+...+..++..+.+.|++++|.+.|++..+..
T Consensus 527 A~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 527 AENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 999999998764 4455678889999999999999999999886543
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.8e-23 Score=181.75 Aligned_cols=294 Identities=14% Similarity=0.061 Sum_probs=175.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhhcC
Q 015246 39 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC---TATFNIMLNGLCKNR 115 (410)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 115 (410)
..+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666666777777766643 22445566666666667777777776666665421111 234556666666667
Q ss_pred chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc----HHHHHHHHHHHHhccchhHHH
Q 015246 116 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN----AITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~ 191 (410)
++++|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 777777777666654 223555666666666677777777777766665433221 122344555666667777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (410)
..++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777666553 33444555666666667777777777776665432222345566666666777777777777766655
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHhhcc
Q 015246 272 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK---DGKIDHAINVFESMEV 339 (410)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 339 (410)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++..
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 344445566666666677777777777666653 4565566655555443 3466666666665543
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.94 E-value=1.7e-23 Score=181.89 Aligned_cols=301 Identities=15% Similarity=0.129 Sum_probs=243.7
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 015246 73 MHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKA 149 (410)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 149 (410)
...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445677899999999999999875 56677899999999999999999999999987532222 24678889999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHcCCHHHH
Q 015246 150 GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG----FGYCTVIAAFVKIGRLKEA 225 (410)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 225 (410)
|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998753 346778889999999999999999999999876522221 2345667778889999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 226 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999998763 33566777888899999999999999999987643333466788899999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--CchhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCcHh
Q 015246 306 GFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCK---AKRLPSASKLLLSCLKSGVRILKS 378 (410)
Q Consensus 306 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~ 378 (410)
.|+...+..++..+.+.|++++|..+++++... +...+..++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 466667788899999999999999999987765 44556666666554 558899999999999877777765
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=3.5e-22 Score=181.73 Aligned_cols=329 Identities=12% Similarity=0.038 Sum_probs=256.4
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
++..+.+.|++++|..+++...... +-+...+..++.+....|+++.|...++++.... |.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3556778899999999999988775 3445566666777778999999999999998864 2356778888888899999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (410)
+++|...++++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 999999999988764 566778888888999999999999999888765333 33334333 347788999999999998
Q ss_pred HhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHH----HHHHHHHHHHcCC
Q 015246 162 LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE----ATDYMEQMVTDGV 237 (410)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~ 237 (410)
+......++......+...+...|++++|+..++++.+.. +.+...+..+...+...|++++ |...+++..+..
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 8775433444555556677888999999999999988775 5567777888888899998885 788888888763
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-HHHHH
Q 015246 238 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL-EAYNC 316 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 316 (410)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++.+.+. .|+. ..+..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 3366788888889999999999999999988764 334566777888889999999999999988875 3443 33444
Q ss_pred HHHHHHccCChHHHHHHHHhhccC
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
+..++...|++++|...|++....
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 567788899999999999987665
No 14
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=1.1e-21 Score=182.32 Aligned_cols=398 Identities=13% Similarity=0.021 Sum_probs=307.0
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+......|+.++|+++|....... +.+...+..+...+...|++++|.++|++..+.. |.+...+..++.++...|++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 456778999999999999998743 5566679999999999999999999999998863 34567788888999999999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+... .+...+..+..++...+..+.|+..++..
T Consensus 100 ~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 100 DEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999998875 55666 88899999999999999999999998743 36667777888888999999999999876
Q ss_pred hhCCCCCcH------HHHHHHHHHHH-----hccch---hHHHHHHHHHHHc-CCCCChh-hHH----HHHHHHHHcCCH
Q 015246 163 GDSGHAPNA------ITYTTIMKCCF-----RNRKY---KLGLEILSAMKRK-GYTFDGF-GYC----TVIAAFVKIGRL 222 (410)
Q Consensus 163 ~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~ 222 (410)
.. .|+. ......+.... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 64 2321 11122222222 12234 7788888888864 1123221 111 113445677999
Q ss_pred HHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHhcCChhHHHHH
Q 015246 223 KEATDYMEQMVTDGVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC---DKYTHTILIDGLCKAGNIKGARLH 298 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 298 (410)
++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++.+..... .......+..++...|++++|...
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999999987532 222 22335778999999999999999987653221 134566677788999999999999
Q ss_pred HHHHHhcCC-----------CCC---HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhH
Q 015246 299 LEYMNKIGF-----------DSN---LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA 361 (410)
Q Consensus 299 ~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 361 (410)
++.+.+... .|+ ...+..+...+...|++++|+..++++... ++..+..++..+...|++++|
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 999987521 123 234566778899999999999999998765 777889999999999999999
Q ss_pred HHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 362 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
++.++++++.. |.+...+...+..+...|++++|..+++++.+..|++
T Consensus 413 ~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 413 ENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 99999999764 4456777778888999999999999999999988764
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.4e-23 Score=174.18 Aligned_cols=353 Identities=15% Similarity=0.106 Sum_probs=174.3
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChH-hHHHHHHHHHhcCChhH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVW-SYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 84 (410)
+-..|++++|+.+++.+.+.. +.....|..+..++...|+.+.|.+.|.+..+. .|+.. ....+...+...|+.++
T Consensus 126 ~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~e 202 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEE 202 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccch
Confidence 334455555555555555442 223444555555555555555555555444442 22222 12223333334455555
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
|...|.+.+... +--...|..|...+-..|+...|++.|++..+. .|+ ...|-.|...|...+.++.|...|.+..
T Consensus 203 a~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 203 AKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred hHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 555544444332 222344555555555555555555555555543 222 3445555555555555555555555554
Q ss_pred hCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh
Q 015246 164 DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 243 (410)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (410)
... +.....+..+...|...|+.+.|+..+++.++.. |.-...|+.+..++-..|++.+|.+.+.+.+... +.....
T Consensus 280 ~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 280 NLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred hcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 421 1123444445555555555555555555555543 3334455555555555555555555555555531 123444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLG 322 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 322 (410)
.+.+...|...|.+++|..+|....+-. +--...++.+...|-..|++++|+..+++.++ +.|+ ...++.+...|-
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHH
Confidence 5555555555555555555555554431 11123455555555555555555555555554 3343 344555555555
Q ss_pred ccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 323 KDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
..|+.+.|.+.+.+....++ ..++.|...|...|+..+|+..|+++++
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 55555555555555554422 3455555555555555555555555553
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=4e-23 Score=172.94 Aligned_cols=391 Identities=14% Similarity=0.052 Sum_probs=329.6
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
.+.+..+++....--....+.. +.-..+|..+...+-..|++++|+.+++.+.+... .....|..+..++...|+.+.
T Consensus 91 i~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~ 168 (966)
T KOG4626|consen 91 IFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLEL 168 (966)
T ss_pred hhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcc
Confidence 4455566666655544444443 55678999999999999999999999999998643 267889999999999999999
Q ss_pred HHHHHHHHhcCCCCCChh-HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 85 ANRVFQDMICGDLTPCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
|.+.|.+.++.+ |+.. ....+...+-..|+..+|...|.+..+... -=...|+.|.-.+...|+...|+..|++..
T Consensus 169 a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 169 AVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred cHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 999999998764 4443 334455666678999999999999887632 235678899999999999999999999998
Q ss_pred hCCCCCc-HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-h
Q 015246 164 DSGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-I 241 (410)
Q Consensus 164 ~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~ 241 (410)
+. .|+ ...|..|...|...+.++.|...+.+..... +.....+..+...|..+|.++-|++.+++.++. .|+ +
T Consensus 246 kl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~ 320 (966)
T KOG4626|consen 246 KL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFP 320 (966)
T ss_pred cC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCch
Confidence 74 344 6778899999999999999999999998775 556778888888999999999999999999985 344 6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDR 320 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 320 (410)
..|+.+..++-..|+..+|.+.++....... ......+.+...+...|.++.|..+|....+. .|. ....+.|...
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i 397 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASI 397 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHH
Confidence 7899999999999999999999999998752 35667888999999999999999999999884 444 5678899999
Q ss_pred HHccCChHHHHHHHHhhccCC---chhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc-HhhHHHHHHHHhhcCCHHHH
Q 015246 321 LGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL-KSAQKAVVDGLRHSGCRREA 396 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 396 (410)
|-.+|++++|+..+++..... ..+|+.+...|-..|+.+.|++.+.+++.. .|. ......+...|...|+..+|
T Consensus 398 ~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~A 475 (966)
T KOG4626|consen 398 YKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEA 475 (966)
T ss_pred HHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHH
Confidence 999999999999999988773 457888999999999999999999999954 554 67888999999999999999
Q ss_pred HHHHHHHHHccCCC
Q 015246 397 KKIQSKIRMAKISH 410 (410)
Q Consensus 397 ~~~~~~~~~~~~~~ 410 (410)
++-++...+.+|+.
T Consensus 476 I~sY~~aLklkPDf 489 (966)
T KOG4626|consen 476 IQSYRTALKLKPDF 489 (966)
T ss_pred HHHHHHHHccCCCC
Confidence 99999999988863
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=6.4e-22 Score=192.11 Aligned_cols=358 Identities=12% Similarity=0.047 Sum_probs=242.0
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCC-CHHHHH------------HHHHHHHhcCChhhHHHHHHHHHHcCCCCChHh
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISP-DVVTYN------------SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWS 68 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 68 (410)
|-.++.+.|++++|++.|++..+..... ....|. .....+.+.|++++|...|+++.+.. +.+...
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a 387 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYA 387 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 4467889999999999999998864211 111121 22456778999999999999999874 336677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCC--------CCHHHHH
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFV--------PELVTYN 140 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~ 140 (410)
+..+..++...|++++|.+.|+++.+.. +.+...+..+...+. .++.++|..+++.+...... .....+.
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~ 465 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLA 465 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHH
Confidence 8888999999999999999999998765 444555555555443 23445555554433221000 0011223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHH----------
Q 015246 141 ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC---------- 210 (410)
Q Consensus 141 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 210 (410)
.+...+...|++++|.+.|++..+..+ .+...+..+...+.+.|++++|...++++.+.. +.+...+.
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCC
Confidence 334444555555555555555544321 133344444555555555555555555554432 11222211
Q ss_pred ----------------------------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015246 211 ----------------------------------TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 256 (410)
Q Consensus 211 ----------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (410)
.....+...|+.++|..+++. .+.+...+..+...+.+.|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 223445566666667666651 34566677888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHh
Q 015246 257 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFES 336 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (410)
+++|...|+++.+.. +.+...+..++..+...|++++|...++.+.+.. +.+......+..++...|++++|.++++.
T Consensus 619 ~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999874 3467888999999999999999999999888752 34566677788899999999999999999
Q ss_pred hccC---Cc------hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 337 MEVK---DS------FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 337 ~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+... ++ ..+..+...+...|++++|+..|++++..
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8764 12 35556678889999999999999999753
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=1.1e-21 Score=178.57 Aligned_cols=358 Identities=10% Similarity=0.014 Sum_probs=273.5
Q ss_pred hhhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 6 YCQFVSFDAGYTILNRMREAG--ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
+.++.+++.---.|+...++. -..+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 445566665555555544321 0122333455677788899999999999999886433 4566666777778899999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
.|.+.|+++.... |.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 94 ~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 94 AVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 9999999998876 6677788888899999999999999999998863 3367788888999999999999999998887
Q ss_pred hCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh
Q 015246 164 DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 243 (410)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (410)
..... +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...+++..+.. +.+...
T Consensus 172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~ 248 (656)
T PRK15174 172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL 248 (656)
T ss_pred HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 65433 23333333 3477889999999999998776433344445556678888999999999999998864 346777
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 244 YNTLINLYCKEGKLEA----AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
+..+...+...|++++ |...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~ 326 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 8888889999999885 788999988764 3356788888999999999999999999988863 344667777888
Q ss_pred HHHccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 320 RLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++...|++++|...++++...++ ..+..+..++...|++++|...|+++++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999998876522 33444567788899999999999998866
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=1e-19 Score=166.25 Aligned_cols=397 Identities=11% Similarity=-0.006 Sum_probs=293.9
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDV--VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
...++|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++.... -+........+...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 4678999999999999999874 443 344 8888888899999999999998721 122233344446688888999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
++|.++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999886 566777788888999999999999999999876 445555555555555566666699999999
Q ss_pred hhCCCCCcHHHHHHHHHHHHhccchhHHHH------------------------------------------------HH
Q 015246 163 GDSGHAPNAITYTTIMKCCFRNRKYKLGLE------------------------------------------------IL 194 (410)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------------------------------------------------~~ 194 (410)
.+..+ .+...+..+..+..+.|-...|.+ -+
T Consensus 196 l~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 196 VRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 88642 245555555555555444333333 33
Q ss_pred HHHHHc--CCCCChhh----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015246 195 SAMKRK--GYTFDGFG----YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 268 (410)
Q Consensus 195 ~~~~~~--~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (410)
+.+... ..|+.... ..-.+-++...|+..++++.++.+...+.+....+-..+..+|...+++++|..++..+.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 333321 11211111 123345677889999999999999988766556678889999999999999999999986
Q ss_pred hCCC-----CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----------CCC---HHHHHHHHHHHHccCChHH
Q 015246 269 KQGF-----ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGF-----------DSN---LEAYNCIVDRLGKDGKIDH 329 (410)
Q Consensus 269 ~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~ 329 (410)
.... .++......|.-++...+++++|..+++.+.+... .|+ ......++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6431 22334457788999999999999999999987311 122 2234456777889999999
Q ss_pred HHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 330 AINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 330 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
|.+.++++... |......+...+...|++.+|.+.++.+.... +.+..+....+.++...|++++|..+.+.+.+.
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999998766 78888889999999999999999998777552 446677778888899999999999999999888
Q ss_pred cCCC
Q 015246 407 KISH 410 (410)
Q Consensus 407 ~~~~ 410 (410)
.|+|
T Consensus 514 ~Pe~ 517 (822)
T PRK14574 514 SPED 517 (822)
T ss_pred CCCc
Confidence 8775
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=1.6e-19 Score=165.04 Aligned_cols=371 Identities=12% Similarity=-0.010 Sum_probs=270.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
.+......+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|.+.++..++.+ +.+...+..+..++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3456677888999999999999999874 5678889999999999999999999999999875 566788999999999
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---------------------------
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS--------------------------- 165 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------- 165 (410)
..|++++|+..|..+...+...+.. ...++..+........+...++.-...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccc
Confidence 9999999999887766542221211 111111111111111111111110000
Q ss_pred CCCCc-HHHHHHHHHH---HHhccchhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 015246 166 GHAPN-AITYTTIMKC---CFRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239 (410)
Q Consensus 166 ~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (410)
...+. ...+..+... ....+++++|.+.|+...+.+ .+.....+..+...+...|++++|...+++..+.. +.
T Consensus 285 ~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~ 363 (615)
T TIGR00990 285 ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PR 363 (615)
T ss_pred ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CC
Confidence 00000 0000111100 122367899999999998764 13345567788888899999999999999999863 22
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
....|..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++..+.. +.+...+..+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~ 441 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGV 441 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHH
Confidence 46678888899999999999999999998874 3467888999999999999999999999999863 445777888899
Q ss_pred HHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHh------hHHHHHHHHhhc
Q 015246 320 RLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKS------AQKAVVDGLRHS 390 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~ 390 (410)
++.+.|++++|...+++.... ++..+..+..++...|++++|++.|+++++.....+.. .+......+...
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 999999999999999988764 67889999999999999999999999998763211111 111122223447
Q ss_pred CCHHHHHHHHHHHHHccCCC
Q 015246 391 GCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 391 g~~~~a~~~~~~~~~~~~~~ 410 (410)
|++++|.+++++..+.++++
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCc
Confidence 99999999999988877653
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.91 E-value=8.9e-20 Score=169.66 Aligned_cols=383 Identities=10% Similarity=-0.026 Sum_probs=288.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 16 YTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
+..++. ...+ +.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.++|++.++.
T Consensus 2 ~~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555 3222 4566666777888899999999999999998632 345567899999999999999999999998877
Q ss_pred CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHH
Q 015246 96 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT 175 (410)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (410)
. +.+...+..+..++...|++++|...++++.+. .+.+.. +..+..++...|++++|...++++.+..+ .+...+.
T Consensus 79 ~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~ 154 (765)
T PRK10049 79 E-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPT 154 (765)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 5 666778888999999999999999999999987 334666 88889999999999999999999998643 3556666
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCCh------hhHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCC
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDG------FGYCTVIAAFV-----KIGRL---KEATDYMEQMVTD-GVQLD 240 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~ 240 (410)
.+..++...+..+.|++.++.+.. .|+. ......+.... ..+++ ++|+..++.+.+. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 678888888999999998886664 2221 01112222221 12234 7788888888864 12222
Q ss_pred hh-hHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CH
Q 015246 241 IV-SYN----TLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NL 311 (410)
Q Consensus 241 ~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 311 (410)
.. .+. ..+..+...|++++|...|+.+.+.+.. |+. ....+..++...|++++|...|+++.+..... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 21 111 1133456779999999999999887532 322 22335778999999999999999988643111 13
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccCCc------------------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVKDS------------------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV 373 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 373 (410)
.....+..++...|++++|...++.+...++ ..+..++..+...|++++|++.++++....
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~- 389 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA- 389 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 4566677788999999999999998876522 234567778889999999999999998764
Q ss_pred CCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 374 RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 374 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
|.+...+..++..+...|++++|++.++++....|++
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Confidence 6678888999999999999999999999999988764
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=1.8e-17 Score=154.85 Aligned_cols=391 Identities=14% Similarity=0.043 Sum_probs=266.1
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR-NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
.+.|.+.|++++|++++.++.+.+ +.+......+...|.. .++ +.+..+++. ....++.....++..+.+.|+
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~ 262 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGE 262 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCC
Confidence 567888999999999999999886 4455566677777777 366 777777553 233578888899999999999
Q ss_pred hhHHHHHHHHHhcCCCC-CChhHHHH------------------------------HHHHHhhcCchHHHHHHH------
Q 015246 82 PDEANRVFQDMICGDLT-PCTATFNI------------------------------MLNGLCKNRYTDNALRMF------ 124 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~-~~~~~~~~------------------------------l~~~~~~~~~~~~a~~~~------ 124 (410)
.++|.+++.++...... |...+|.. ++..+.+.++++.+.++.
T Consensus 263 ~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (987)
T PRK09782 263 KARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPAN 342 (987)
T ss_pred HHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcc
Confidence 99999998887543111 22222211 122223333333333221
Q ss_pred -----------------------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----------------
Q 015246 125 -----------------------RGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS---------------- 165 (410)
Q Consensus 125 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------- 165 (410)
+.+.+. .+-+......+.-...+.|+.++|..+|+.....
T Consensus 343 ~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 343 EMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred hHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 111111 0001111111111222334444444443333220
Q ss_pred -----------------------------------------------CC-CC--cHHHHHHHHHHHHhccchhHHHHHHH
Q 015246 166 -----------------------------------------------GH-AP--NAITYTTIMKCCFRNRKYKLGLEILS 195 (410)
Q Consensus 166 -----------------------------------------------~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (410)
+. ++ +...|..+..++.. +++++|+..+.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 00 12 44555555555555 67777888777
Q ss_pred HHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 015246 196 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 275 (410)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 275 (410)
+.... .|+......+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...+++..+.. +.+
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~ 575 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGD 575 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-Ccc
Confidence 77766 355444444455556889999999999987654 3445556677778889999999999999998764 223
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHH
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 352 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 352 (410)
...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...+++.... ++..+..+..++
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL 653 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 333334444555669999999999999985 567888999999999999999999999988776 667888899999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 353 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
...|++++|+..++++++.. |.+...+..+..++...|++++|...++++.+..++
T Consensus 654 ~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 654 WDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999764 557888999999999999999999999999887765
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.6e-18 Score=152.62 Aligned_cols=398 Identities=15% Similarity=0.068 Sum_probs=236.5
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPD--VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG- 80 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 80 (410)
++|..+|+++.|...|-+..+.. ++ ...+-.+.+.+.+.|+++.+...|+.+.+.. +.+..+...|...|+..+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~ 391 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAK 391 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhh
Confidence 34444555555555554444432 22 2223334455555555555555555554431 223334444444444332
Q ss_pred ---ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCHH
Q 015246 81 ---KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL----QKHGFVPELVTYNILIKGLCKAGRLR 153 (410)
Q Consensus 81 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~ 153 (410)
..+.|..++....... +.|...|..+...+.....+.. +..|..+ ...+..+.+...|.+...+...|++.
T Consensus 392 ~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 2334444444433332 3444445444444433332222 4433332 22333345555566666666666666
Q ss_pred HHHHHHHHHhhC---CCC------CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHcCCHH
Q 015246 154 TARWILKELGDS---GHA------PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD-GFGYCTVIAAFVKIGRLK 223 (410)
Q Consensus 154 ~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 223 (410)
.|...|+..... ... ++..+-..+..+.-..++++.|.+.|..+.+. .|. ...|..++......+...
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcH
Confidence 666666555432 011 12222233444445555666666666666555 222 222222322223335566
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHh------------cC
Q 015246 224 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCK------------AG 290 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~ 290 (410)
+|...+...... ...++..+..+...+.....+..|.+-|..+.+.- ..+|..+...|...|.. .+
T Consensus 548 ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 548 EASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 666666666654 23355666666667777777777777666665432 23466666666665542 24
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHH
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
..+.|+++|.++++.. +.|...-+.+.-.++..|++.+|..+|.++.+. ...+|..+.++|...|++..|++.|+.
T Consensus 627 ~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999988863 557777788999999999999999999999877 668999999999999999999999999
Q ss_pred HHHc-CCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 368 CLKS-GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 368 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
+.+. ....++.....|.+++.+.|++.+|.+.+.......|.+
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~ 749 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSN 749 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCcc
Confidence 8865 334578888999999999999999999999988877653
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=4.3e-17 Score=149.29 Aligned_cols=368 Identities=14% Similarity=0.076 Sum_probs=275.5
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh--HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDV--WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
+.-.-+-...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|...+++..... +........+...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHH
Confidence 33334445679999999999999999864 443 234 88888889999999999999988221 2333334444668
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHH
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 190 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (410)
+...|++++|+++|+++.+.... ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 88999999999999999987443 6777788889999999999999999999875 45555555555555556677679
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHH------------------------------------------
Q 015246 191 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY------------------------------------------ 228 (410)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------------------------------------------ 228 (410)
++.++++.+.. |.+...+..+..++.+.|-...|.++
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 99999999885 55565656666665555543333322
Q ss_pred ------HHHHHHc-CCCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHH
Q 015246 229 ------MEQMVTD-GVQLDI-VSY----NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGAR 296 (410)
Q Consensus 229 ------~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 296 (410)
++.+... +..|.. ..| .-.+-++...+++.++.+.++.+...+.+....+-..+..+|...+++++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 2333321 111221 111 2234467788999999999999998886656668889999999999999999
Q ss_pred HHHHHHHhcC-----CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCc------------------hhHHHHHHHHH
Q 015246 297 LHLEYMNKIG-----FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS------------------FTYSSMVHNLC 353 (410)
Q Consensus 297 ~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~~~l~~~~~ 353 (410)
.+++.+.... .+++......|..++...+++++|..+++.+....+ ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 9999997643 123444457889999999999999999998876311 12445677788
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 354 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
..|+..+|.+.++++.... |-|......+...+...|.+.+|++.++.+....|+
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 9999999999999998764 668899999999999999999999999888776654
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.87 E-value=6.6e-17 Score=130.24 Aligned_cols=399 Identities=15% Similarity=0.172 Sum_probs=289.9
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH---HHHHHHHHcC-------------------CC
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSL---DLLDEMLEMG-------------------IP 63 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~-------------------~~ 63 (410)
+..+|.+.++.-+++.|.+.|++.+...-..|++..+-.+.-+--. +.|-.|.+.| .+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 4567899999999999999998888877766665443322211111 1111121111 23
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015246 64 PDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI 143 (410)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (410)
-+..++..+|.++++-...+.|.+++++......+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 3678899999999999999999999999888777899999999987654332 277899999988999999999999
Q ss_pred HHHHhcCCHHH----HHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhH-HHHHHHHHHHc----CC----CCChhhHH
Q 015246 144 KGLCKAGRLRT----ARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL-GLEILSAMKRK----GY----TFDGFGYC 210 (410)
Q Consensus 144 ~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~~ 210 (410)
.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.+++.+ +..++.++... .+ +.|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 99999998765 56788889999999999999999999999888754 44444444432 22 23555677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTD----GVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 283 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 283 (410)
..+..|.+..+.+-|.++..-+... -+.|+ ..-|..+....++....+.-...|..|...-..|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 7888888889999888877666542 12233 2345667777888888999999999998887888999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-Ch--------H-----HHHHHHHh-------hccC--
Q 015246 284 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KI--------D-----HAINVFES-------MEVK-- 340 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~~~-------~~~~-- 340 (410)
++....+.++-..++|.++...|..-+...-..++..+++.. .. . -|..+++. +...
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 999999999999999999988775555555555555555443 11 1 11112221 1111
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC-C---CCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 341 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG-V---RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
.+...+..+..+.+.|+.++|-+++.-..+.+ - .|.......++..-.+.+++..|..+++-+...+.
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 56667777778889999999999998886543 1 23334444666777788889999988888766554
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.85 E-value=1.4e-16 Score=128.46 Aligned_cols=354 Identities=16% Similarity=0.181 Sum_probs=263.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 015246 28 SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM 107 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (410)
+.+..++..+|.++++-...++|.+++++-.......+..+||.+|.+-.-.. ..+++.+|.+..+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 56788999999999999999999999999988878889999999998655332 27899999999999999999999
Q ss_pred HHHHhhcCchHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhh----CCCC----CcHHHH
Q 015246 108 LNGLCKNRYTDN----ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRT-ARWILKELGD----SGHA----PNAITY 174 (410)
Q Consensus 108 ~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~----~~~~~~ 174 (410)
+++..+.|+++. |.+++.+|.+.|+.|...+|..++..+++.+++.+ +..++.++.. ..++ .+...|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 56788899999999999999999999999888744 5555555543 2222 245556
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHcC----CCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 175 TTIMKCCFRNRKYKLGLEILSAMKRKG----YTFD---GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
...+..|.+..+.+.|.++..-+.... ++|+ ..-|..+....++....+.....|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 777888889999999988877766431 2233 223556777778888999999999999988788899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC-Ch--------h-----HHHHHH-------HHHHhcC
Q 015246 248 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-NI--------K-----GARLHL-------EYMNKIG 306 (410)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~-----~a~~~~-------~~~~~~~ 306 (410)
+++..-.|.++-.-++|.++...|...+......++..+++.. .. . -|..++ .++.+.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~- 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ- 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc-
Confidence 9999999999999999999888775545444444444444433 11 0 011111 122332
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-----CchhHH---HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHh
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYS---SMVHNLCKAKRLPSASKLLLSCLKSGVRILKS 378 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 378 (410)
.......+.++-.+.+.|+.++|.+++..+... .....+ .++..-...+.+..|+.+++-|...+.+.-..
T Consensus 519 -~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~ 597 (625)
T KOG4422|consen 519 -DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEG 597 (625)
T ss_pred -cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhH
Confidence 344567788888999999999999999988544 122233 45566677889999999999998776443333
Q ss_pred hHHHHHHHH
Q 015246 379 AQKAVVDGL 387 (410)
Q Consensus 379 ~~~~l~~~~ 387 (410)
.-+.+...|
T Consensus 598 La~RI~e~f 606 (625)
T KOG4422|consen 598 LAQRIMEDF 606 (625)
T ss_pred HHHHHHHhc
Confidence 334444444
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.84 E-value=7.8e-16 Score=144.07 Aligned_cols=389 Identities=12% Similarity=0.052 Sum_probs=282.5
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+..+.++++++.+.++.. ..|.......-.......+...++.+.+..|.+.. +-+......+.-...+.|+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~ 392 (987)
T PRK09782 320 LPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQS 392 (987)
T ss_pred HHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccH
Confidence 667788888887665522 23333332111122223477788888888887752 33666677777778889999
Q ss_pred hHHHHHHHHHhcC--CCCCChhHHHHHHHHHhhcCc---hHHHHHH----------------------HHHHHhC-C-CC
Q 015246 83 DEANRVFQDMICG--DLTPCTATFNIMLNGLCKNRY---TDNALRM----------------------FRGLQKH-G-FV 133 (410)
Q Consensus 83 ~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~~~-~-~~ 133 (410)
++|.++|...... +-.++......++..|.+.+. ..++..+ ++..... + .+
T Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p 472 (987)
T PRK09782 393 REAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMS 472 (987)
T ss_pred HHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCC
Confidence 9999999998763 113344455567777777655 3333222 2222111 1 23
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH
Q 015246 134 P--ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 211 (410)
Q Consensus 134 ~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 211 (410)
+ +...|..+..++.. +++++|...+.+..... |+......+...+...|++++|...++++... +|+...+..
T Consensus 473 ~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~ 547 (987)
T PRK09782 473 PSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLA 547 (987)
T ss_pred CCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHH
Confidence 4 56778888877776 78889999888877643 55544444455567899999999999998665 455555667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 291 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (410)
+..++.+.|+.++|...++...+.. +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|+
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCC
Confidence 7788899999999999999998864 223333333444455669999999999999987 4567888999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 292 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 292 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 368 (410)
+++|...+++..+.. +.+...+..+..++...|++++|+..+++.... ++..+..+..++...|++++|+..+++.
T Consensus 625 ~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 625 VPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999863 456778888888999999999999999988765 7778999999999999999999999999
Q ss_pred HHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 369 LKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 369 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
++.. +-+..+.........+..+++.|.+.+++.-..++
T Consensus 704 l~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 704 IDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 9663 33446666777778888888888888777655443
No 28
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.82 E-value=4e-16 Score=137.88 Aligned_cols=396 Identities=11% Similarity=0.045 Sum_probs=213.5
Q ss_pred hhhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 6 YCQFVSFDAGYTILNRMREAGIS--PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
|.-.|+++.+..+..-+...... .-...|-.+.++|-..|++++|...|.+..+.........+..+...+.+.|+++
T Consensus 280 fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle 359 (1018)
T KOG2002|consen 280 FYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLE 359 (1018)
T ss_pred HhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHH
Confidence 34445555555555444432200 1122344455555555555555555544444321111222334445555555555
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcC----chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNR----YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 159 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (410)
.+...|+.+.... +.+..+...|...|...+ ..+.|..++.+..+. .+.|...|-.+...+....-+.. +..|
T Consensus 360 ~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~s-L~~~ 436 (1018)
T KOG2002|consen 360 ESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWAS-LDAY 436 (1018)
T ss_pred HHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHHH-HHHH
Confidence 5555555554443 333444444444444432 334444444444443 22344445444444433322222 4444
Q ss_pred HHHh----hCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc---CCCCChh------hHHHHHHHHHHcCCHHHHH
Q 015246 160 KELG----DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK---GYTFDGF------GYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 160 ~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~l~~~~~~~~~~~~a~ 226 (410)
..+. ..+..+.+...|.+...+...|++.+|...|...... ...++.. +--.+..++...++.+.|.
T Consensus 437 ~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~ 516 (1018)
T KOG2002|consen 437 GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAE 516 (1018)
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHH
Confidence 3332 2333355556666666666666666666666665544 1122221 1223344444555666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc-
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI- 305 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 305 (410)
+.|..+.+.. +.-+..|..++......+...+|...++.....+ ..++..+..+...+.+...+..|..-|+.+.+.
T Consensus 517 e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 517 EMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 6666666541 1122333333322233455666666666665543 334455555555666666666666655554432
Q ss_pred CCCCCHHHHHHHHHHHHc------------cCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 306 GFDSNLEAYNCIVDRLGK------------DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 306 ~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
...+|..+...|.+.|.. .+..+.|+++|.++... |..+-+.++.+++..|++.+|..+|.+.++
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrE 674 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVRE 674 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHH
Confidence 112466666666664432 23467788888877766 455566778888999999999999999987
Q ss_pred cCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 371 SGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 371 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
.. .....+|..++.+|..+|++..|++.|+...+.-
T Consensus 675 a~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf 710 (1018)
T KOG2002|consen 675 AT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKF 710 (1018)
T ss_pred HH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 64 4466788999999999999999999999886654
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=4.2e-17 Score=132.53 Aligned_cols=186 Identities=11% Similarity=0.040 Sum_probs=96.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHH
Q 015246 218 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 297 (410)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 297 (410)
..|++++|...+.+.+.....-....|+ +.-.+-..|+.++|++.|-++... +..+..+...+...|....+..+|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 3455666666666655442111111111 122344556666666665554332 12244455555555666666666666
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 015246 298 HLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR 374 (410)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 374 (410)
++.+.... ++.|+.+...|...|-+.|+-..|.+..-.--.- +..+...|..-|....-+++|+..|+++. -++
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liq 656 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQ 656 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcC
Confidence 66555543 4445556666666666666666655544332222 44555555555555555566666666554 235
Q ss_pred CcHhhHHHHHHHH-hhcCCHHHHHHHHHHHHHccC
Q 015246 375 ILKSAQKAVVDGL-RHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 375 ~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~ 408 (410)
|+..-|..++..| .+.|+++.|..+++.+.++-|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 6666665555443 456666666666666555443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.81 E-value=4.3e-15 Score=130.56 Aligned_cols=363 Identities=13% Similarity=0.006 Sum_probs=235.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
.......|++++|.+++.++.+.. +.....|..|..+|-..|+.+++...+-.+...+ +.|...|..+.....+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccH
Confidence 334444577888888887777763 3366677777777777787777777665554443 55667777777777777778
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHH----HHHHHHHHhccchhHHHHH
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITY----TTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~ 193 (410)
+.|.-+|.+..+.. +++...+---+..|-+.|+...|...|.++.....+.|..-+ -..+..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888887777763 335555555566777777777777777777765432222222 2234455566666777777
Q ss_pred HHHHHHc-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------------CCCChhhHH
Q 015246 194 LSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG---------------------------VQLDIVSYN 245 (410)
Q Consensus 194 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~ 245 (410)
++..... +-..+...++.++..+.+...++.+........... ..++..+ -
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 7766652 123455566777777777777777777766665511 1122222 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 246 TLINLYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
.++-++.+.+..+....+.......+. .-+...|..+..++...|.+.+|+.++..+......-+...|..+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 233345555555555555555555553 334567778888888888888888888888876444556678888888888
Q ss_pred cCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHH--------HcCCCCcHhhHHHHHHHHhhcCC
Q 015246 324 DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL--------KSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 324 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
.|.+++|.+.++.+... +...-..|...+.+.|+.++|.+.+..+. ..+..|+..........+...|+
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 88888888888887766 33444555666778888888888887754 12344555566666677788888
Q ss_pred HHHHHHHHHHHH
Q 015246 393 RREAKKIQSKIR 404 (410)
Q Consensus 393 ~~~a~~~~~~~~ 404 (410)
.++-......|.
T Consensus 542 ~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 542 REEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHH
Confidence 877665554443
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=3.5e-16 Score=127.24 Aligned_cols=379 Identities=16% Similarity=0.123 Sum_probs=256.5
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDV------VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ 78 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (410)
.+.+...+..|++.+.-.... .|+. ...+.+...+.+.|.++.|+..|+...+. .|+..+-..|+-++..
T Consensus 246 i~~kkr~fskaikfyrmaldq--vpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFA 321 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhee
Confidence 456777788888888777654 2322 24455555677888899999888888774 3677666666667777
Q ss_pred cCChhHHHHHHHHHhcCCCC------------CChhHHHHHH-----HHHhhcC--chHHHHHHHHHHHhCCCCCCHH--
Q 015246 79 LGKPDEANRVFQDMICGDLT------------PCTATFNIML-----NGLCKNR--YTDNALRMFRGLQKHGFVPELV-- 137 (410)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~-----~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-- 137 (410)
.|+.++..+.|..|+..... |+....+--+ .-.-+.+ +.++++-.--++..--+.|+-.
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g 401 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG 401 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc
Confidence 88888888888888754222 2222222111 1111111 1122222111221111112110
Q ss_pred -----------HH--------HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc---------------------HHHH---
Q 015246 138 -----------TY--------NILIKGLCKAGRLRTARWILKELGDSGHAPN---------------------AITY--- 174 (410)
Q Consensus 138 -----------~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------------~~~~--- 174 (410)
.+ -.-..-+.+.|+++.|.++++-+.+..-+.- ...|
T Consensus 402 ~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~ 481 (840)
T KOG2003|consen 402 CDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADI 481 (840)
T ss_pred cHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHH
Confidence 00 0112456778888888877776644322110 0111
Q ss_pred -------H-----HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh
Q 015246 175 -------T-----TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 242 (410)
Q Consensus 175 -------~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 242 (410)
+ .-......+|++++|.+.+++.+.... .....+..+.-.+...|++++|++.|-++... ...+..
T Consensus 482 aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda-sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~e 559 (840)
T KOG2003|consen 482 ALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA-SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAE 559 (840)
T ss_pred HhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch-HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence 0 001112335889999999999887642 22333333445567889999999999887664 344778
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 322 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (410)
+...+...|-...+..+|.+++.+.... ++.|+...+.+...|-+.|+..+|.+.+-+--+. ++.+.++..-|..-|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi 637 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI 637 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence 8888999999999999999999887765 4668899999999999999999999988776665 6778899999999999
Q ss_pred ccCChHHHHHHHHhhc--cCCchhHHHHHHHH-HhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCC
Q 015246 323 KDGKIDHAINVFESME--VKDSFTYSSMVHNL-CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
...-+++++..|++.. .++..-|..++..| .+.|+++.|.++|+...+. +|.|...+..+++.+...|-
T Consensus 638 dtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 638 DTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999999999999764 44778888887655 5699999999999998765 68899999999998877773
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.81 E-value=3e-14 Score=121.13 Aligned_cols=291 Identities=13% Similarity=0.028 Sum_probs=154.9
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH----HHcCCCCChHhHHHHHHHHHh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEM----LEMGIPPDVWSYNSLMHCLFQ 78 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 78 (410)
.-+|++..-++.|..+++...+. ++.+..+|.+-...=-.+|+.+...+++.+- ...|+..+...|..=...|-.
T Consensus 413 wlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 34566777777788888777764 4667777776666666677777776666543 334565565555555555555
Q ss_pred cCChhHHHHHHHHHhcCCCCC--ChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015246 79 LGKPDEANRVFQDMICGDLTP--CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 156 (410)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 156 (410)
.|..-.+..+....+..|+.. -..+|..-...|.+.+.++-|..+|....+. ++.+...|......--..|..++..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 555555555555555544322 2345555555566666666666666655554 2334444444444444455555555
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 015246 157 WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236 (410)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (410)
.+|++....- +-....|......+-..|+...|..++..+.+.+ +.+...+...+.....+..++.|..+|.+...
T Consensus 571 Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~-- 646 (913)
T KOG0495|consen 571 ALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS-- 646 (913)
T ss_pred HHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--
Confidence 5555555432 2233344444444555555555555555555543 33444455555555555555555555555544
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHhcCChhHHHHHHHH
Q 015246 237 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD-KYTHTILIDGLCKAGNIKGARLHLEY 301 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 301 (410)
..|+...|..-+...-..++.++|.+++++..+. -|+ ...|..+.+.+.+.++.+.|...|..
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 2344444444444444445555555555555443 222 22334444444444444444444433
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=8.4e-14 Score=118.44 Aligned_cols=367 Identities=12% Similarity=0.030 Sum_probs=217.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
+|..-.+.|.+.+.++-|..+|....+- ++-+...|..+...--..|..+....+|+++...- +.....|......+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH
Confidence 3444444444445555555555554442 22233444444444444555555555555555432 334444555555555
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHH
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 192 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (410)
..|+...|..++....+.... +...|-.-+..-..+.+++.|..+|.+.... .|+...|.--+..-.-.++.++|++
T Consensus 596 ~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHH
Confidence 556666666666666554322 4555555555566666666666666665543 2444444444444444556666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 015246 193 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 272 (410)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (410)
++++.++.- +.-...|..+.+.+.+.++++.|...|..-.+. .+..+..|..+...--+.|..-.|..++++..-.+.
T Consensus 673 llEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 673 LLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 666655542 333445555556666666666666666555443 333444555555555555666666666666665542
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHH
Q 015246 273 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNL 352 (410)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 352 (410)
-+...|...++.-.+.|+.+.|..+..+.++. ++.+...|..-|.+..+.++-......+.+.. .|+.....+...+
T Consensus 751 -k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-~dphVllaia~lf 827 (913)
T KOG0495|consen 751 -KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-HDPHVLLAIAKLF 827 (913)
T ss_pred -CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-CCchhHHHHHHHH
Confidence 25556666666666666666666666666654 44455556666666555555444444433322 2677777788888
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 353 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
-...+++.|.+.|.+.++.+ +.+..+|..+...+.+.|.-++-.+++.+.....|.|
T Consensus 828 w~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 88899999999999999775 5567788888888899999999999999998888776
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=4.8e-14 Score=115.45 Aligned_cols=386 Identities=11% Similarity=0.087 Sum_probs=232.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhHHH
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDV-WSYNSLMHCLFQLGKPDEAN 86 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 86 (410)
.++++..|..+|++..... ..+...|...+.+=.+++.+..|..+++..... -|.+ ..|...+..--..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 3678889999999999766 567778888888888899999999999988874 2333 34555555556678999999
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 015246 87 RVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG 166 (410)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 166 (410)
++|++..+. .|+..+|++.+..=.+.+.++.|..+++...-. .|+..+|--..+.=.+.|+...+..+|+...+.-
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 999988765 789999999999988999999999999988764 5788888888877778888888887777765421
Q ss_pred C--CCcHHHHHHHHHHHHhccchhHHHHHHHH--------------------------------------------HHHc
Q 015246 167 H--APNAITYTTIMKCCFRNRKYKLGLEILSA--------------------------------------------MKRK 200 (410)
Q Consensus 167 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------------------------------------------~~~~ 200 (410)
- ..+...+.++...-.+...++.|.-+|+- +.+.
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 0 01112222222222222222222222222 2222
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHH-----H---HHhcCCHHHHHHHHHHHHhC
Q 015246 201 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV--SYNTLIN-----L---YCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-----~---~~~~~~~~~a~~~~~~~~~~ 270 (410)
+ +.|-.++--.+..-...|+.+...++|+..+.. ++|-.. .|...+- + -....+.+.+.++++.+.+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l 395 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL 395 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 2 344555666666667778888888888888775 444221 1222111 1 12356677777777766653
Q ss_pred CCCCchHHHHHHHHHH----HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---Cch
Q 015246 271 GFECDKYTHTILIDGL----CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSF 343 (410)
Q Consensus 271 ~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 343 (410)
++....||..+-..| .++.++..|.+++...+. ..|...+|...|..-.+.+++|.+..++++...- +..
T Consensus 396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 233334444333222 344555666666555443 3555555666665555566666666666655544 333
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKSG-VRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
+|......-...|+.+.|..+|.-++... +.-....|...+..-...|.++.|..+++++.+
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 44444444445555666666655555321 111123344444444555555555555555544
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=6.4e-15 Score=129.50 Aligned_cols=331 Identities=13% Similarity=0.112 Sum_probs=258.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 148 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (410)
.-.........|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-.+-..+ +.|...|..+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHh
Confidence 3333444455699999999999999887 7888999999999999999999999887766653 4477899999999999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhh----HHHHHHHHHHcCCHHH
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG----YCTVIAAFVKIGRLKE 224 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~ 224 (410)
.|+++.|.-.|.+.++..+ ++...+-.-...|-+.|+...|...|.++.....+.|..- ....+..+...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999998653 4555556667888999999999999999998853223222 2344566777888899
Q ss_pred HHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------------------------Cch
Q 015246 225 ATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE---------------------------CDK 276 (410)
Q Consensus 225 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~ 276 (410)
|.+.++..... +-..+...++.++..+.+...++.+............. ++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99999888763 23345667888899999999999999888877652111 122
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHhhccC----CchhHHHHHH
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVH 350 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~ 350 (410)
.. ..+.-++.+....+....+...+.+.... -+...|.-+..++...|++.+|+.+|..+... +...|..++.
T Consensus 379 ~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~ 457 (895)
T KOG2076|consen 379 RV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLAR 457 (895)
T ss_pred hh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHH
Confidence 22 12333444555555555555556665533 34678889999999999999999999999877 6778999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 351 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
+|...|.+++|++.|++.+... |.+...-..|...+.+.|+.++|.+.++.+.
T Consensus 458 c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 458 CYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999999999999763 5566777888889999999999999999865
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.79 E-value=2.2e-15 Score=129.78 Aligned_cols=280 Identities=12% Similarity=0.040 Sum_probs=202.5
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHH--HHHHHHHhccchhHH
Q 015246 114 NRYTDNALRMFRGLQKHGFVPELVT-YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYT--TIMKCCFRNRKYKLG 190 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 190 (410)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 688888887777765542 12333 333345557888888888888888764 34433222 335677888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHHHHHhcCCHHHHHHH
Q 015246 191 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLINLYCKEGKLEAAYLL 263 (410)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 263 (410)
...++.+.+.. |.+......+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888776 6667778888888888889998888888888775442221 222333333344455666666
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---
Q 015246 264 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 340 (410)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 340 (410)
++.+.+. .+.++.....+...+...|+.++|...+++..+. +|+.... ++.+....++.+++.+..+...+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 6666443 2446778888889999999999999999888873 5555332 233444568889999888887766
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 341 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
|+..+..+...+.+.+++++|.+.|+++.+. .|+..++..+..++.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6667888889999999999999999999855 78888888899999999999999999887643
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.78 E-value=3.6e-15 Score=129.24 Aligned_cols=291 Identities=10% Similarity=-0.032 Sum_probs=205.9
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHH
Q 015246 42 TRNSLLSCSLDLLDEMLEMGIPPDV-WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNA 120 (410)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 120 (410)
...|+++.|.+.+....+.. |++ ..+-....+....|+++.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35799999999998877753 433 344455677778899999999999887653122223444457888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHH---HhccchhHHHHHHHHH
Q 015246 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC---FRNRKYKLGLEILSAM 197 (410)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~ 197 (410)
...++.+.+.. |-++..+..+...+...|++++|.+.+..+.+.+..++......-...+ ...+..+.+.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998875 3367788888999999999999999999998876543322211111211 3333334444455555
Q ss_pred HHcCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015246 198 KRKGY---TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS---YNTLINLYCKEGKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 198 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (410)
.+... +.+...+..+...+...|+.++|.+.+++..+... +... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 54421 23777888888899999999999999999988633 3321 1111222344577888888888887663
Q ss_pred CCCch--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 272 FECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 272 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
+-|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2244 56678889999999999999999964444457888888899999999999999999998764
No 38
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=3e-18 Score=141.20 Aligned_cols=258 Identities=17% Similarity=0.135 Sum_probs=107.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC-CCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 141 ILIKGLCKAGRLRTARWILKELGDSG-HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 141 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|...++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45677778888888888886544433 23345555666667777888888888888888765 3355566666666 678
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHhcCChhHHHHH
Q 015246 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGARLH 298 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 298 (410)
+++++|.+++....+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|...
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888776654 2466677778888888899999999988876543 245667788888888899999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 015246 299 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 375 (410)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 375 (410)
+++..+.. +.|......++..+...|+.+++..++...... ++..+..+..++...|++++|+.++++..+.. +.
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 99998863 335777888889999999998877777665443 78888899999999999999999999988764 66
Q ss_pred cHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 376 LKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 376 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
|+.....+..++...|+.++|.++..++-
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp -HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 88888899999999999999999887654
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=3.4e-18 Score=140.89 Aligned_cols=261 Identities=15% Similarity=0.114 Sum_probs=77.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC-CCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMG-IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 114 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (410)
.+...+...|++++|+++++...... .+.+...|..+.......++++.|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34555666666666666664433332 12233444444555555666666666666666554 3344455555555 466
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCcHHHHHHHHHHHHhccchhHHHHH
Q 015246 115 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG-HAPNAITYTTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 193 (410)
+++++|.+++....+. .+++..+..++..+...++++++.++++.+.... .+++...|..+...+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666555443 2344455555666666666666666666654322 234455555666666666666666666
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015246 194 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 273 (410)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 273 (410)
+++..+.. |.+......++..+...|+.+++..++....... +.++..+..+..++...|+.++|...|++..+.+ +
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence 66666653 3345555556666666666666666665555542 3344555566666666666666666666665543 3
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 274 CDKYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
.|+.+...+..++...|+.++|..+.+++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 355555666666666666666666655543
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=7.9e-15 Score=126.39 Aligned_cols=282 Identities=12% Similarity=0.002 Sum_probs=210.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCChHh-HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHH--HHHHHHhhcCchHHH
Q 015246 44 NSLLSCSLDLLDEMLEMGIPPDVWS-YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFN--IMLNGLCKNRYTDNA 120 (410)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 120 (410)
.|+++.|.+.+....+.. +++.. +........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 689999998888766542 22333 333345557889999999999998765 45543332 346688889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcH-------HHHHHHHHHHHhccchhHHHHH
Q 015246 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA-------ITYTTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~ 193 (410)
...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+....++. .+|..++.......+.+...+.
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998875 337788888899999999999999999999886554322 2334444444455556666667
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 015246 194 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE 273 (410)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 273 (410)
++.+.+.- +.++.....+...+...|+.++|.+.+++..+. +|+.... ++.+....++.+++.+..+...+.. +
T Consensus 252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-C
Confidence 76665442 557778888899999999999999999988874 4444322 2334445688999999999888774 3
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 274 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
-|+..+..+.+.+...+++++|...|+.+.+. .|+...+..+..++.+.|+.++|.+++++..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36667888899999999999999999999884 6888888899999999999999999988764
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.78 E-value=3.8e-15 Score=129.09 Aligned_cols=285 Identities=11% Similarity=0.031 Sum_probs=189.8
Q ss_pred hcCchHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
..|+++.|.+.+.+..+.. |+ ...+-....++...|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4788888888887776652 33 33334446777778888888888888765432222233333466777788888888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH-HHHH---HHHhcCCHHHHHHHHHHH
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN-TLIN---LYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~~ 267 (410)
..++.+.+.. |.+......+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..++..+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888775 556667777888888888888888888888877543 222221 1111 112222333333344444
Q ss_pred HhCCC---CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHccCChHHHHHHHHhhccC-
Q 015246 268 EKQGF---ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEA---YNCIVDRLGKDGKIDHAINVFESMEVK- 340 (410)
Q Consensus 268 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~- 340 (410)
.+... +.++..+..++..+...|+.++|...+++..+.. |+... ...........++.+.+.+.++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 43321 1366777788888888888888888888888753 33221 111112223456777788888776655
Q ss_pred --Cc--hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 341 --DS--FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 341 --~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
++ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56 6667888889999999999999995443345788888888899999999999999998875
No 42
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.8e-14 Score=117.17 Aligned_cols=386 Identities=15% Similarity=0.057 Sum_probs=232.5
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCC
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPD-VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGK 81 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 81 (410)
+-|.++|++++|++.+.+.++. .|+ +.-|.....+|...|+|+++.+.-...++. .|+ +..+..-..++-..|+
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhcc
Confidence 3577889999999999999987 567 778888888999999999998888887774 343 3455555666667777
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHh-CC--CCCCHHHHHHHHHHHHh----------
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQK-HG--FVPELVTYNILIKGLCK---------- 148 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~---------- 148 (410)
+++|+.=..-..-.+--.+..+--.+=+.+ -..|....++-.+ .+ +-|+.....+....+..
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~L-----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVL-----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHH-----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence 776643222111110000111000000000 0111111111111 11 12222222222221110
Q ss_pred ---------------cC---CHHHHHHHHHHHhhC---CCCCc---------HHHHHHHHHHHHhccchhHHHHHHHHHH
Q 015246 149 ---------------AG---RLRTARWILKELGDS---GHAPN---------AITYTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 149 ---------------~~---~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
.+ .+..+...+.+-... ....+ ..+.......+.-.|+.-.+..-|+..+
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 00 122222222211110 00011 1112222223445677788888888888
Q ss_pred HcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHH
Q 015246 199 RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYT 278 (410)
Q Consensus 199 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 278 (410)
... +.+...|--+...|...++.++.+..|......+.. ++.+|..-.+.+.-.+++++|..-|++..... +.+...
T Consensus 354 ~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~ 430 (606)
T KOG0547|consen 354 KLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYA 430 (606)
T ss_pred hcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHH
Confidence 765 233333666777788888888888888888876443 67777777777777888888888888888764 224556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---------Cchh--HHH
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFT--YSS 347 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~--~~~ 347 (410)
|..+.-+..+.+.++++...|++..+. ++.-++.|+.....+..+++++.|.+.|+..... ++.. ...
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 666666667788888888888888775 6666788888888888888888888888876554 1111 111
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
++. +.-.+++..|.+++.++++.+ |-....+..+.....+.|+.++|+++|++..
T Consensus 510 ~l~-~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 510 LLV-LQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred Hhh-hchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111 112478888888888888664 4456677788888888888888888888753
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.3e-13 Score=109.60 Aligned_cols=357 Identities=11% Similarity=0.055 Sum_probs=245.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh--HHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA--TFNI 106 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 106 (410)
.|...+-.....+-+.|....|.+.|...... .|..-.+|..|.... -+.+.+..+ .. +.+.+.. .--.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~l----~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSIL----VV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHHH----Hh-cCcccchHHHHHH
Confidence 34333333344455567777777777666543 222333333333322 222222222 11 1122111 1123
Q ss_pred HHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCcHHHHHHHHHHHHhc
Q 015246 107 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH--APNAITYTTIMKCCFRN 184 (410)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 184 (410)
+..++-...+.+++.+-.......|++.+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++-.-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~- 311 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND- 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh-
Confidence 4456666778888888888888888876666666666777788999999999999988632 1256677766543222
Q ss_pred cchhHHHHHHHH-HHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 015246 185 RKYKLGLEILSA-MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 263 (410)
Q Consensus 185 ~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 263 (410)
+-. +..+.+ ....+ +.-+.|...+.+.|+-.++.++|...|+..++.+.. ....|+.+..-|....+...|.+.
T Consensus 312 -~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 -KSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred -hHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 111 112211 11111 445667778888899999999999999999987443 567788888899999999999999
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---
Q 015246 264 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 340 (410)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 340 (410)
++..++-+ +-|...|-.+.++|.-.+.+.=|+-.|++..+. .+.|+..|..|..+|.+.++.++|++.|.....-
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 99999886 448889999999999999999999999999986 3667899999999999999999999999988766
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHHc----C-CCC-cHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 341 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----G-VRI-LKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
+...+..++..+-+.++.++|...|++.++. | ..| .......|..-+.+.+++++|......
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 4578999999999999999999999888752 3 222 122223344456777777777664443
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=1.2e-13 Score=110.77 Aligned_cols=282 Identities=16% Similarity=0.151 Sum_probs=203.0
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHH
Q 015246 114 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 193 (410)
.|++.+|++.+.+-.+.+-. ....|..-+++....|+.+.+-.++.+..+....++....-...+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68888888888887776544 34455556677778888888888888887754455666666667777888888888888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 194 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV-------SYNTLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~ 266 (410)
+.++.+.+ +..+........+|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 88888776 6667777788888888888888888888888876654433 445555544445555555556666
Q ss_pred HHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---Cch
Q 015246 267 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSF 343 (410)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~ 343 (410)
.... .+.++..-..++.-+...|+.++|.++..+..+.+..|+ -...-.+.+-++...-.+..+...+. ++.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 5443 244566677777788888888888888888888766665 22223455666666666665554443 677
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
.+.+|+..|.+++.+.+|.+.|+..++. .|+..++..+..++.+.|+.++|.++.++..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 8888888888888888888888887744 7888888888888888888888888887654
No 45
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.73 E-value=1.9e-13 Score=109.71 Aligned_cols=286 Identities=16% Similarity=0.049 Sum_probs=214.1
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHH
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALR 122 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (410)
..|+|.+|+++..+-.+.+-. ....|..-+++.-..|+.+.+-.++.++.+..-.++....-+..+.....|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 368899999888887766433 3445666667777888899999988888876335666777777788888888899988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc-------HHHHHHHHHHHHhccchhHHHHHHH
Q 015246 123 MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-------AITYTTIMKCCFRNRKYKLGLEILS 195 (410)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (410)
-++++.+.+.. ++.......++|.+.|++.....++..+.+.+.-.+ ..+|..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 88888887544 677788888899999999999999988888775443 3457777776666666666666666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 015246 196 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 275 (410)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 275 (410)
....+- +.++..-..++.-+.++|+.++|.++..+..+.+..|+ ... .-.+.+-++...-.+..+.-.+.. +.+
T Consensus 254 ~~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 655442 45566667778888889999999999888888766555 111 223456677777777766665542 335
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
+..+..+...|.+.+.+.+|...|+...+ ..|+..+|..+..++.+.|+..+|.++.++..
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 57788888889999999999999997777 47888899999999999999999888887654
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=1.3e-13 Score=107.36 Aligned_cols=289 Identities=14% Similarity=0.099 Sum_probs=207.8
Q ss_pred cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhhcCchHHH
Q 015246 44 NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC---TATFNIMLNGLCKNRYTDNA 120 (410)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 120 (410)
.++.++|.++|-+|.+... -+..+..+|.+.|.+.|..+.|+.+-+.+..+.--+. ......|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4577888888888887432 2455667788888888899999888888876421111 22344567778888888999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc----HHHHHHHHHHHHhccchhHHHHHHHH
Q 015246 121 LRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN----AITYTTIMKCCFRNRKYKLGLEILSA 196 (410)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (410)
..+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+. ...|-.+...+....+.+.|...+.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999988887532 2556777888888888889999888888877655443 34466677777778888888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 015246 197 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 276 (410)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 276 (410)
..+.+ +.....--.+.......|+++.|.+.++.+.+.++.--+.+...+..+|.+.|+.++....+.++.+... ..
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~ 282 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GA 282 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--Cc
Confidence 88775 5556666667788888899999999999888876655567778888889999999988888888887643 33
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc---cCChHHHHHHHHhhcc
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK---DGKIDHAINVFESMEV 339 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 339 (410)
..-..+...-....-.+.|...+.+-... .|+...+..++..-.. .|...+....++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33444445445555566676666665553 6888888888876543 3445555666666643
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.3e-13 Score=108.32 Aligned_cols=324 Identities=15% Similarity=0.061 Sum_probs=235.8
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCH-H-HHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL-V-TYNIL 142 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l 142 (410)
|...+-...-.+.+.|....|...|......- |-.-.+|..|.... .+.+. ...+... .+.+. . .=-.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHhc-CcccchHHHHHHH
Confidence 44444444445556777888888877766442 33334444443332 22222 2222221 22111 1 11223
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHHc
Q 015246 143 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF---DGFGYCTVIAAFVKI 219 (410)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 219 (410)
..++....+.+++..-.+...+.|.+.+...-+....+.....|+++|+.+|+++.+.. |- |..+|+.++-. +.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv--~~ 310 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYV--KN 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHH--Hh
Confidence 45666667888888888888888887676666667777888999999999999999884 32 45566666533 32
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHH
Q 015246 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (410)
.+.. ...+.+-...--+-.+.|...+..-|.-.++.++|...|++..+.+. -....|+.+..-|....+...|...+
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2211 12222211111223557778888889999999999999999998863 35667888899999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 015246 300 EYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 376 (410)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 376 (410)
+..++.+ +.|...|..+.++|.-.+.+.-|+-.|++...- |+..|.+|+.+|.+.++.++|++.|.++...| ..+
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 9999974 668899999999999999999999999988654 99999999999999999999999999999876 557
Q ss_pred HhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 377 KSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 377 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
...+..++..|.+.++.++|.+.+++..+
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 78899999999999999999999998765
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.3e-13 Score=106.10 Aligned_cols=290 Identities=15% Similarity=0.143 Sum_probs=221.1
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHH
Q 015246 77 FQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKAGRLR 153 (410)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 153 (410)
.-.++.++|.++|-+|.+.+ +.+..+..+|.+.|.+.|..|.|+++...+.++.--+. ......|.+-|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34578999999999999765 56667778899999999999999999999987621111 234566788899999999
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHHcCCHHHHHHHH
Q 015246 154 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD----GFGYCTVIAAFVKIGRLKEATDYM 229 (410)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~ 229 (410)
.|+.+|..+.+.+. .-......|+..|-...+|++|++.-+++.+.+-.+. ...|..+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 99999999987543 3456778899999999999999999999988753332 235777888888889999999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 015246 230 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 309 (410)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 309 (410)
.+..+.+.+ ....--.+.+.....|+++.|.+.|+.+.+.+..--+.+...+..+|...|+.++...++..+.+.. +
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 999886433 4455556777889999999999999999998665556788889999999999999999999998864 4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHhhccC--CchhHHHHHHHHHh---cCChhhHHHHHHHHHHc
Q 015246 310 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCK---AKRLPSASKLLLSCLKS 371 (410)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~ 371 (410)
....-..+........-.+.|...+.+-... +...+..++..-.. .|+..+-+..++.|+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 4444445555554555566666655544433 55667777766543 45567777788888744
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.4e-14 Score=122.03 Aligned_cols=277 Identities=13% Similarity=0.059 Sum_probs=133.2
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF--VPELVTYNILIKGLCKAGRLRTARWIL 159 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (410)
..+|...|..+... +.-+......+..+|...+++++|..+|+.+.+... .-+...|.+.+-.+-+. -++..+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 34455555553322 122233444455555555555555555555544310 11334444443322211 111111
Q ss_pred H-HHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 015246 160 K-ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ 238 (410)
Q Consensus 160 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 238 (410)
- .+.+. -+..+.+|-.+..+|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+..
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--- 484 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--- 484 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC---
Confidence 1 11111 12234555555555555555555555555555543 334555555555555555555555555555432
Q ss_pred CChhhHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 015246 239 LDIVSYNT---LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 315 (410)
Q Consensus 239 ~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 315 (410)
++..|++ +...|.+.++++.|+-.|+.+.+-+ +.+......+...+.+.|+.++|+.+++++.... +.|+..-.
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 3333332 3344555555555555555555543 2244444555555555555566666665555442 22333333
Q ss_pred HHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 316 CIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
..+..+...+++++|+..++++... +...+..++..|.+.|+.+.|+.-|--+.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 3344455555566665555555443 4445555556666666666666666555544
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=6.7e-14 Score=119.36 Aligned_cols=288 Identities=14% Similarity=0.068 Sum_probs=212.6
Q ss_pred CChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCC--CCCChhHHHHHHHHHhhcCchHHHHH
Q 015246 45 SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD--LTPCTATFNIMLNGLCKNRYTDNALR 122 (410)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (410)
-+..+|...|+.+... +..+..+...+.++|...+++++|.++|+.+.+.. .-.+..+|.+.+.-+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567888888885554 34455777788889999999999999999887652 12345667666554322 22333
Q ss_pred HHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHc
Q 015246 123 MFRG-LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 123 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (410)
.+.+ +... .+-.+.+|..+.++|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 3332 3333 3447789999999999999999999999988874 34 6778888888888888999999999888854
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 015246 201 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 280 (410)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 280 (410)
. +.+-.+|-.+...|.+.++++.|+-.|++..+.++. +......+...+.+.|+.++|+.+++++.....+ |+..-.
T Consensus 485 ~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 485 D-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred C-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 3 333344555677888999999999999998886433 5666777777888899999999999998877533 555555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchh
Q 015246 281 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT 344 (410)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 344 (410)
..+..+...+++++|+..++++.+. .+.+..++..+...|.+.|+.+.|+.-|.-+...++..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 6677778889999999999999885 34456677788888999999999988888776664443
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=2.1e-11 Score=100.31 Aligned_cols=254 Identities=8% Similarity=-0.017 Sum_probs=172.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHH
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALR 122 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (410)
.++++..|..+|+..+..+. .+...|...+.+-.+...+..|..++++....- |.-...|...+..=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHH
Confidence 46678889999999987653 366677788888889999999999999988653 3334566666666667899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC
Q 015246 123 MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 202 (410)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (410)
+|+.-..- .|+...|++.++.=.+.+.++.|..++++..- +.|+..+|......-.+.|....+..+|+.+.+.--
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 99999874 78999999999999999999999999999886 358999999999999999999999999998876511
Q ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHH--------HHHHHhC
Q 015246 203 --TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD--IVSYNTLINLYCKEGKLEAAYLL--------LDEMEKQ 270 (410)
Q Consensus 203 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~ 270 (410)
......+.++...-.++..++.|.-+|.-.+.. ++.+ ...|..+...--+-|+.....+. ++.+...
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 112334444444445566777777777766654 2222 22333333222233332222211 1222222
Q ss_pred CCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 271 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
+ +.|..+|...++.-...|+.+...+++++.+.
T Consensus 318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 2 23444455555555555555555555555554
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.63 E-value=3.5e-13 Score=118.51 Aligned_cols=250 Identities=14% Similarity=0.118 Sum_probs=145.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 015246 17 TILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD 96 (410)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 96 (410)
.++..+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-...+.+...|+.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45677888999999999999999999999999998 9999988888888899999999999988887765
Q ss_pred CCCChhHHHHHHHHHhhcCchHHHHHHHHH-HHh-------CCCCCCHHH--------------HHHHHHHHHhcCCHHH
Q 015246 97 LTPCTATFNIMLNGLCKNRYTDNALRMFRG-LQK-------HGFVPELVT--------------YNILIKGLCKAGRLRT 154 (410)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~-------~~~~~~~~~--------------~~~l~~~~~~~~~~~~ 154 (410)
.|...+|..|..+|...||... ++..++ +.. .|+.....- -...+....-.|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6788999999999999999776 222222 211 111100000 0111222222333344
Q ss_pred HHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc-hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015246 155 ARWILKELGDSGHAPNAITYTTIMKCCFRNRK-YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (410)
+++++..+.......... . +++-+..... +++-..+.....+ .++..+|..++.+-...|+.+.|..++..|.
T Consensus 158 llkll~~~Pvsa~~~p~~-v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQ-V--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCcccccchHH-H--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 444443332221111000 0 1222222111 1221211111111 3555566666666566666666666666666
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 015246 234 TDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 288 (410)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (410)
+.|.+.+..-|-.++-+ .++...+..+++.|.+.|+.|+..|+...+..+..
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 66665555555555433 55555555556666666666666666555555554
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=6.8e-14 Score=109.22 Aligned_cols=234 Identities=12% Similarity=-0.003 Sum_probs=190.3
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
|..--..+..+|.+.|.+.+|.+.++..++. .|-+.||..+-.+|.+..+++.|+.++.+-.+. .+.++.....+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3333466778999999999999999888877 566778888889999999999999999888875 4445555667778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH
Q 015246 250 LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 329 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (410)
.+...++.++|.++++...+.. +.+......+...|.-.++++-|+.+++++.+.|. .+++.|+.+.-+|...+.+|-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhh
Confidence 8888899999999999988764 34566666677778888999999999999999885 477888888889999999999
Q ss_pred HHHHHHhhccC------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 330 AINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 330 A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
++..|++.... -..+|..+.......|++.-|.+.|+-++.++ +.+...++.+.-.-.+.|+.++|+.+++..
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 98888877654 45678888888888999999999999988775 556788888888888999999999999888
Q ss_pred HHccCC
Q 015246 404 RMAKIS 409 (410)
Q Consensus 404 ~~~~~~ 409 (410)
....|+
T Consensus 456 ~s~~P~ 461 (478)
T KOG1129|consen 456 KSVMPD 461 (478)
T ss_pred hhhCcc
Confidence 766553
No 54
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2e-11 Score=102.63 Aligned_cols=400 Identities=12% Similarity=0.037 Sum_probs=259.3
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH----HHcC---------CCCChHh
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEM----LEMG---------IPPDVWS 68 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~---------~~~~~~~ 68 (410)
+.+++.-.|++++|..+...-.-. ..|..+......++.+..++++|..++... .... +.+|..-
T Consensus 55 ~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~ 132 (611)
T KOG1173|consen 55 LAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAG 132 (611)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCccc
Confidence 345666667777777776655432 356777777777888888888888887722 1100 0011100
Q ss_pred ----HHH-------HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc-----------------C-chHH
Q 015246 69 ----YNS-------LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN-----------------R-YTDN 119 (410)
Q Consensus 69 ----~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------~-~~~~ 119 (410)
-+. -...|....+.++|...|.+.+..++ ..-..+..++....-. + +.+.
T Consensus 133 ~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~-~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~ 211 (611)
T KOG1173|consen 133 EDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA-KCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVER 211 (611)
T ss_pred ccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-hhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHH
Confidence 000 11233344566777777776653321 1111222222211110 1 1111
Q ss_pred HHHHHHHHHh----------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh
Q 015246 120 ALRMFRGLQK----------------HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 183 (410)
Q Consensus 120 a~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (410)
...+|+-... .+..-++........-+...+++.+..++.+.+.+.. ++....+..-|.++..
T Consensus 212 l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~e 290 (611)
T KOG1173|consen 212 LEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYE 290 (611)
T ss_pred HHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHH
Confidence 1111211100 0122234444455566677888888888888887753 3455555555667788
Q ss_pred ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 015246 184 NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLL 263 (410)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 263 (410)
.|+..+-..+-.++.+.- |....+|-.+...|...|+..+|.+.|.+....+.. =...|-.+...|...|..++|...
T Consensus 291 l~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaa 368 (611)
T KOG1173|consen 291 LGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAA 368 (611)
T ss_pred hcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHH
Confidence 888777777777777663 666777888888888888999999998887764222 245677788888888888888888
Q ss_pred HHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---
Q 015246 264 LDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 340 (410)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 340 (410)
+..+-+.- +-....+..+..-|.+.++.+.|.++|...... .+.|+.+.+.+.-.....+.+.+|...|+.....
T Consensus 369 Y~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~ 446 (611)
T KOG1173|consen 369 YFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKS 446 (611)
T ss_pred HHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhh
Confidence 88776542 112223444555677888899999999888775 3556777888877777888999999998876633
Q ss_pred -------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 341 -------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 341 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
...+++.|+.++.+.+.+++|+..+++.+... +.+..++..++-.|...|+++.|...|.+....++++
T Consensus 447 ~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 447 VLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred ccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 23357888899999999999999999998774 6688899999999999999999999999888777653
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.6e-11 Score=103.11 Aligned_cols=284 Identities=12% Similarity=-0.019 Sum_probs=220.1
Q ss_pred CCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHH
Q 015246 98 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI 177 (410)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 177 (410)
..+.........-+...+++.+..++.+.+.+. .++....+..-|.++...|+..+-..+=.++.+. .+..+.+|-.+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 445555566667777889999999999998886 4557777777777888888888877777777764 34467888888
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 015246 178 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 257 (410)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 257 (410)
.-.|...|...+|.+.|.+....+ +.-...|..+..+|...|..++|...+....+. .+.....+--+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccH
Confidence 888888899999999999888665 334567888889999999999999999888765 222333333444567888999
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHccCChHHHH
Q 015246 258 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI------GFDSNLEAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~ 331 (410)
+.|.+.|.+..... +.|+...+.+.-.....+.+.+|..+|+..... ...-...+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999988764 447778888887778889999999999887632 01113456788889999999999999
Q ss_pred HHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 332 NVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 332 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
..+++.... +..++..++-.+...|+++.|++.|.+.+ .+.|+..+-..++..+.
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 999987654 88899999999999999999999999998 55787766666665443
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=1.9e-12 Score=116.72 Aligned_cols=269 Identities=12% Similarity=0.057 Sum_probs=191.4
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh---------cCChhHHHHHHHHHh
Q 015246 28 SPDVVTYNSLIAGATR-----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ---------LGKPDEANRVFQDMI 93 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 93 (410)
+.+...|...+++... .+++++|.+.|++..+.... +...+..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4556666655555321 34689999999999886422 45566666655442 345789999999999
Q ss_pred cCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHH
Q 015246 94 CGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 173 (410)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (410)
+.+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+...+...|++++|...+++..+..+. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 886 6678888889889999999999999999999874 336778888899999999999999999999886543 2223
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 253 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (410)
+..++..+...|++++|...++++.....+.+...+..+..++...|+.++|...+.++... .+.+....+.+...|..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhc
Confidence 33445556778999999999999887642334555777888889999999999999987664 22234445566666777
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 254 EGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
.| +.|...++.+.+.. -.+.. .......+.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777765432 11211 22244455666777777666 7777653
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.5e-11 Score=100.27 Aligned_cols=367 Identities=13% Similarity=0.029 Sum_probs=237.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
+.....-|.++|++++|++.|.+..+. .|+ +..|.....+|...|+|+++.+--...++.+ +.-+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 344556788899999999999999884 466 7788889999999999999999888877654 223445666667777
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh---------
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR--------- 183 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------- 183 (410)
..|++++|+.=+.-..-.+.-.|..+--.+=+.+-+.+ ...+.+-+..= ...+-|+.....+....+..
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~n-r~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKEN-RPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhccc-CCCCCCcHHHHHHHHhhccccccccccCC
Confidence 78888887654433322211112222111111111111 11222222200 01122333333333322211
Q ss_pred ----------------cc---chhHHHHHHHHHHHcC-CCC-----Ch------hhHHHHHHHHHHcCCHHHHHHHHHHH
Q 015246 184 ----------------NR---KYKLGLEILSAMKRKG-YTF-----DG------FGYCTVIAAFVKIGRLKEATDYMEQM 232 (410)
Q Consensus 184 ----------------~~---~~~~a~~~~~~~~~~~-~~~-----~~------~~~~~l~~~~~~~~~~~~a~~~~~~~ 232 (410)
.+ .+..+...+.+-.... ..+ |. .+.......+.-.|+.-.+..-|+..
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 01 1222222222211100 011 11 11222222344568888999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 015246 233 VTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLE 312 (410)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 312 (410)
++....+ ...|-.+...|...++.++.+..|++..+.+ +-++.+|..-.+...-.+++++|..-|++.+... +.+..
T Consensus 353 I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~ 429 (606)
T KOG0547|consen 353 IKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAY 429 (606)
T ss_pred HhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhH
Confidence 8874443 3337777788999999999999999999886 3377888888888899999999999999999853 33456
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-----CcHhhH--HH
Q 015246 313 AYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR-----ILKSAQ--KA 382 (410)
Q Consensus 313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~--~~ 382 (410)
.|..+..+..+.++++++...|++...+ .+..|+.....+...++++.|.+.|+.+++.... .+...+ ..
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 6777777788999999999999999887 7889999999999999999999999999865311 122222 22
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 383 VVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 383 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
++..-++ +++..|..++++..+.+|.
T Consensus 510 ~l~~qwk-~d~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 510 LLVLQWK-EDINQAENLLRKAIELDPK 535 (606)
T ss_pred Hhhhchh-hhHHHHHHHHHHHHccCch
Confidence 2222244 8999999999999887763
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.58 E-value=2e-10 Score=98.22 Aligned_cols=386 Identities=13% Similarity=0.078 Sum_probs=249.0
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
+...+++...++..+.+.+. .+....+.....-.+...|+-++|........+.++. +...|..+.-.+....++++|
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHH
Confidence 34567788888888888774 2344455555555666788888888888887776543 667788777777778889999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015246 86 NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 165 (410)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (410)
.+.|......+ +.|...+.-+.-.-++.|+++........+.+. .+.....|..++.++.-.|+...|..+++...+.
T Consensus 95 iKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 95 IKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888776 777888887777777888888888877777765 2235567777888888888888888888888765
Q ss_pred C-CCCcHHHHHHHHH------HHHhccchhHHHHHHHHHHHcCCCCChhhH-HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 015246 166 G-HAPNAITYTTIMK------CCFRNRKYKLGLEILSAMKRKGYTFDGFGY-CTVIAAFVKIGRLKEATDYMEQMVTDGV 237 (410)
Q Consensus 166 ~-~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 237 (410)
. ..|+...+..... .....|.++.|.+.+...... ..|...+ ..-...+.+.+++++|..++..++..
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-- 248 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-- 248 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--
Confidence 4 2455555543332 334566677776666554433 2222222 23445667788888888888888875
Q ss_pred CCChhhHH-HHHHHHHhcCCHHHHH-HHHHHHH----------------------------------hCCCCCchHHHHH
Q 015246 238 QLDIVSYN-TLINLYCKEGKLEAAY-LLLDEME----------------------------------KQGFECDKYTHTI 281 (410)
Q Consensus 238 ~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~----------------------------------~~~~~~~~~~~~~ 281 (410)
.||..-|. .+..++.+-.+.-++. .+|.... +.|+++ ++..
T Consensus 249 nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~d 325 (700)
T KOG1156|consen 249 NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKD 325 (700)
T ss_pred CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhh
Confidence 34444433 3333443222222222 3443332 222221 1222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh---c---C------------CCCCHHHH--HHHHHHHHccCChHHHHHHHHhhccCC
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNK---I---G------------FDSNLEAY--NCIVDRLGKDGKIDHAINVFESMEVKD 341 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~---~---~------------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 341 (410)
+...|-.. ...- +++++.. + | -+|+...| ..++..+-+.|+++.|...++......
T Consensus 326 l~SLyk~p---~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT 401 (700)
T KOG1156|consen 326 LRSLYKDP---EKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT 401 (700)
T ss_pred hHHHHhch---hHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 22222111 1111 2222210 0 0 14555444 456778889999999999999988875
Q ss_pred chh---HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 342 SFT---YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 342 ~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
+.. |..-.+.+...|+.++|..++++..+.+ .+|...-..-+....+.++.++|.++..+.-+.|
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 544 4444678889999999999999998776 5555544456666788999999999988876655
No 59
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.7e-10 Score=96.44 Aligned_cols=387 Identities=14% Similarity=0.033 Sum_probs=243.2
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
++.+...|++++|++..+++...+ +.+...+..-+.++.+.+++++|+.+.+.-... ..+...+..-+.+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 455678899999999999999876 667778888888999999999999665543211 11111112234455688999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCC---------------------------C
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP---------------------------E 135 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~ 135 (410)
++|...++-.. +.+..+...-.+.+.+.+++++|+.+|+.+.+.+.+. .
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 99999988332 3344577777888999999999999999986653210 1
Q ss_pred HHHHHHHH---HHHHhcCCHHHHHHHHHHHhhC-------CCCC------cH-HHHHHHHHHHHhccchhHHHHHHHHHH
Q 015246 136 LVTYNILI---KGLCKAGRLRTARWILKELGDS-------GHAP------NA-ITYTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 136 ~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~-------~~~~------~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
..+|..+. -.+...|++.+|+++++...+. +-.. .. ..-..+...+...|+.++|.+++...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 12333332 3456789999999999988221 1111 11 112234456678899999999999998
Q ss_pred HcCCCCChhhHHHHHH---HHHHcCC-----------------HHHHHHHH-------------------------HHHH
Q 015246 199 RKGYTFDGFGYCTVIA---AFVKIGR-----------------LKEATDYM-------------------------EQMV 233 (410)
Q Consensus 199 ~~~~~~~~~~~~~l~~---~~~~~~~-----------------~~~a~~~~-------------------------~~~~ 233 (410)
+.+ ++|......... +.....+ .+.+...+ ++..
T Consensus 252 ~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred Hhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 876 444432211111 1100000 00000000 0000
Q ss_pred HcCCCCC--hhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHH--------H
Q 015246 234 TDGVQLD--IVSYNTLINLY--CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLE--------Y 301 (410)
Q Consensus 234 ~~~~~~~--~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~ 301 (410)
.. .++. ...+..++... ++...+..+.+++...-+....-...+....++.....|+++.|.+++. .
T Consensus 331 a~-lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 331 AS-LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred Hh-CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 00 1111 12233333322 2223467777777777665322234556667778889999999999999 4
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC------C----chhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------D----SFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+.+.+ ..+.+...+...+.+.++.+.|..++.+.... . ...+..++..-.+.|+-++|..+++++.+.
T Consensus 410 ~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 410 ILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 55533 34566777888888888888888887776543 1 123333444455679999999999999986
Q ss_pred CCCCcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 372 GVRILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
. ++|..+...++.+|++. +++.|..+-.+
T Consensus 488 n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 488 N-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred C-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 4 78889999999988775 46666665443
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=1.4e-11 Score=111.09 Aligned_cols=264 Identities=11% Similarity=-0.003 Sum_probs=180.1
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHH---------hccchhHHHHHHHHHHHc
Q 015246 135 ELVTYNILIKGLCK-----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCF---------RNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 135 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~ 200 (410)
+...|...+++... .+++++|...|++..+..+ .+...|..+..++. ..+++++|...++++.+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45555555554322 2346788889998887532 23445555555443 224578899999999888
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH
Q 015246 201 GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT 280 (410)
Q Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 280 (410)
+ +.+...+..+...+...|++++|...+++..+.+ +.+...+..+..++...|++++|...+++..+.+.. +...+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 6 6677788888888888999999999999998864 335667788888899999999999999999887433 223333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCC---chhHHHHHHHHHhcCC
Q 015246 281 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKR 357 (410)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 357 (410)
.++..+...|++++|...++++.+...+.++..+..+..++...|++++|...+.++...+ ....+.+...+...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence 4444566688899999999988765323345556777888889999999999998876653 334455555666666
Q ss_pred hhhHHHHHHHHHHc-CCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 358 LPSASKLLLSCLKS-GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 358 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
++|...++++.+. .-.+....+ ....+.-.|+.+.+..+ +++.+.+
T Consensus 490 -~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 -ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred -HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4777777776643 112222222 44455666777777766 6665544
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=8.3e-12 Score=100.65 Aligned_cols=165 Identities=12% Similarity=0.065 Sum_probs=70.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015246 67 WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 146 (410)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (410)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444445555555555555555544332 2334444444445555555555555555544432 12333444444444
Q ss_pred HhcCCHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 015246 147 CKAGRLRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 225 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 225 (410)
...|++++|.+.+++...... ......+..+..++...|++++|...+.+..+.. +.+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 455555555555544443211 1112223333334444444444444444444332 22223333334444444444444
Q ss_pred HHHHHHHHH
Q 015246 226 TDYMEQMVT 234 (410)
Q Consensus 226 ~~~~~~~~~ 234 (410)
...+++...
T Consensus 189 ~~~~~~~~~ 197 (234)
T TIGR02521 189 RAYLERYQQ 197 (234)
T ss_pred HHHHHHHHH
Confidence 444444433
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.56 E-value=6e-12 Score=101.50 Aligned_cols=197 Identities=13% Similarity=0.048 Sum_probs=128.2
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 015246 207 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 286 (410)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (410)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344455556666666666666666665542 2234555556666666666666666666666543 22344555566666
Q ss_pred HhcCChhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHH
Q 015246 287 CKAGNIKGARLHLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSAS 362 (410)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 362 (410)
...|++++|...+++..+... +.....+..+..++...|++++|...+++.... +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 666777777777766665321 122345555666777777777777777766554 4456777778888888888888
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 363 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
..++++.+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888888766 3456666667777788888999988888877654
No 63
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=1.3e-10 Score=101.56 Aligned_cols=125 Identities=17% Similarity=0.270 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 290 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (410)
.+...|...|++++|..+++..++.. +..+..|..-...+-+.|++.+|.+.++....... -|...-+..+..+.+.|
T Consensus 199 ~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 199 FLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCC
Confidence 33444555555555555555555542 11244444555555555555555555555555432 24444444555555555
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHH------H--HHHHHHHHccCChHHHHHHHHhh
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEA------Y--NCIVDRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~~g~~~~A~~~~~~~ 337 (410)
++++|..++....+.+..|.... | .....+|.+.|++..|++.|..+
T Consensus 277 ~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 277 RIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555555554433222111 1 22334555555555555544433
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.1e-12 Score=102.62 Aligned_cols=227 Identities=11% Similarity=0.005 Sum_probs=197.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 140 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
+.+.++|.+.|.+.+|.+.|+...+. .|-+.||..+...|.+..++..|+.++.+-.+.- |.+........+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 66889999999999999999988775 4677889999999999999999999999988773 55666666788889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHH
Q 015246 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (410)
++.++|.++++...+. .+.+++....+...|.-.++++.|+.+++++.+.|+. ++..|..+..+|...++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999999987 3447777778888899999999999999999999965 8889999999999999999999999
Q ss_pred HHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 300 EYMNKIGFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 300 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++....-..|+ ..+|..+.......||+..|.+.|+-.... +...++.|...-.+.|+.++|..++..+...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99886544444 567888888889999999999999988766 6678999998889999999999999998743
No 65
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.55 E-value=2.7e-09 Score=91.53 Aligned_cols=394 Identities=11% Similarity=0.058 Sum_probs=226.7
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAG-ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
++.+.++|++-.....|+.....= +......|...+......+-++-+..+|++..+. ++..-+-.+..+++.++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccc
Confidence 345667888888888888877542 2334457777777777778888888888888763 34446666777777888
Q ss_pred hhHHHHHHHHHhcCC------CCCChhHHHHHHHHHhhcCchH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015246 82 PDEANRVFQDMICGD------LTPCTATFNIMLNGLCKNRYTD---NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 152 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (410)
+++|.+.+..+.... .+.+...|..+....++..+.- ....+++.+...-...-...|..|...|.+.|.+
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhh
Confidence 888877776665321 1233333433333333222111 1112222222210000122344444444444444
Q ss_pred HHHHHHHHHHhhCCC-----------------------------------------------------------------
Q 015246 153 RTARWILKELGDSGH----------------------------------------------------------------- 167 (410)
Q Consensus 153 ~~a~~~~~~~~~~~~----------------------------------------------------------------- 167 (410)
++|..+|++....-.
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 444444444322100
Q ss_pred -CCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 015246 168 -APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240 (410)
Q Consensus 168 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 240 (410)
+.+...|..-.. ...|+..+....+.++.+.- .| -...|..+...|-..|+++.|..+|++..+...+.-
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v 421 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTV 421 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccch
Confidence 011222221111 12344555555555555431 11 123466778888889999999999998877533211
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----------C-------chHHHHHHHHHHHhcCChhHHHHHHH
Q 015246 241 ---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE----------C-------DKYTHTILIDGLCKAGNIKGARLHLE 300 (410)
Q Consensus 241 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (410)
..+|......-.+..+++.|++++++.....-. | +...|...+..-...|-++....+++
T Consensus 422 ~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 422 EDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 234555555556677888888888776532111 1 12345555555566788888888999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-----CchhHHHHHHHHHh---cCChhhHHHHHHHHHHcC
Q 015246 301 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCK---AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~ 372 (410)
++.+..+. ++.+......-+-...-++++.+++++-... -...|+..+.-+.+ ....+.|..+|+++++ |
T Consensus 502 riidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~ 579 (835)
T KOG2047|consen 502 RIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-G 579 (835)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-c
Confidence 88886543 3444444444455566688888998887765 23456666655544 3457899999999998 6
Q ss_pred CCCcHh-h-HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 373 VRILKS-A-QKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 373 ~~~~~~-~-~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
++|... + |......-.+.|-...|..+++++-.
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777543 2 22223334567888889888888643
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.53 E-value=1.3e-10 Score=101.45 Aligned_cols=292 Identities=11% Similarity=0.057 Sum_probs=207.1
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhc----
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL---- 79 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 79 (410)
..+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.++. +..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 5678899999999999886654 3344556778889999999999999999999998632 444455555555222
Q ss_pred -CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015246 80 -GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 157 (410)
Q Consensus 80 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 157 (410)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+| .+|+.+-..|.......-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHH
Confidence 35677788898887653 4433333333333332333 3455666777778765 355666666665555555566
Q ss_pred HHHHHhhC--------------CCCCcH--HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC
Q 015246 158 ILKELGDS--------------GHAPNA--ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 221 (410)
Q Consensus 158 ~~~~~~~~--------------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (410)
++...... .-+|+. .++..+...|...|++++|++.+++.++.. |..+..|..-...+-+.|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCC
Confidence 66655332 112444 345666778889999999999999999885 4457788889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH--------HHHHHHHHHHhcCChh
Q 015246 222 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY--------THTILIDGLCKAGNIK 293 (410)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~ 293 (410)
+.+|.+.++........ |...=+..+..+.+.|+.++|.+++....+.+..|... -......+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999987443 66666677788899999999999999997766433221 1244567889999999
Q ss_pred HHHHHHHHHHh
Q 015246 294 GARLHLEYMNK 304 (410)
Q Consensus 294 ~a~~~~~~~~~ 304 (410)
.|+..|..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99887776654
No 67
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.52 E-value=1.6e-09 Score=94.78 Aligned_cols=128 Identities=17% Similarity=0.066 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhc
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA 355 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 355 (410)
|......+...+..+++...+.+..+. .+.....|......+...|...+|.+.|...... ++.+..++..++.+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 445566677888889999888888775 3455677777778888999999999999977655 667788899999999
Q ss_pred CChhhHHH--HHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 356 KRLPSASK--LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 356 ~~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
|+..-|.. ++..+++.+ +.+...|..++..+.+.|+.++|..+|.-..+...
T Consensus 732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 99888877 999999887 77899999999999999999999999998876543
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=1.2e-09 Score=86.89 Aligned_cols=385 Identities=12% Similarity=0.090 Sum_probs=201.5
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
-+....++..|+.+++.-...+-.....+-.-+..++.+.|++++|...|..+.+. -.++...+..|..++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHH
Confidence 34556778888888877665442222233333556677889999999988888774 34566667777777777888888
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (410)
|.++-.... .++-.-..|.+...+.++-++-..+-+.+.+. ...--+|.......-.+.+|++++.+...
T Consensus 110 A~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888766543 22333334445555566655555555554432 12222333444444456777777777765
Q ss_pred CCCCCcHHHHHHHH-HHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc--CCHHHHH--H----------HH
Q 015246 165 SGHAPNAITYTTIM-KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI--GRLKEAT--D----------YM 229 (410)
Q Consensus 165 ~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~--~----------~~ 229 (410)
.+ |+....+..+ -+|.+..-++.+.+++.-..+.- +.++...+..+....+. |+..+.+ . ..
T Consensus 180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 32 4444444433 34555666666666666655541 22333333222222211 1111110 0 11
Q ss_pred HHHHHcC------------CCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH-----------
Q 015246 230 EQMVTDG------------VQL-----DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI----------- 281 (410)
Q Consensus 230 ~~~~~~~------------~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 281 (410)
+.+.+++ +-| -+..-..++--|.+.++..+|..+.+++... .|-......
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~g 334 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETG 334 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcC
Confidence 1111110 000 0112222333455666666666665554321 122211111
Q ss_pred ------------------------------HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 015246 282 ------------------------------LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 282 ------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 331 (410)
+...+.-..++++.+.+++.+... +..|...-..+.++++..|.+.+|.
T Consensus 335 SreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaE 413 (557)
T KOG3785|consen 335 SREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAE 413 (557)
T ss_pred cHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHH
Confidence 112222223344444444444433 2222222234567777788888888
Q ss_pred HHHHhhccC---CchhHH-HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHH-HHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 332 NVFESMEVK---DSFTYS-SMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA-VVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 332 ~~~~~~~~~---~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
++|-++..+ +..+|. .+.++|.+++.++-|-.++-++ +-+.+...+.. +..-|.+.|.+=-|.+.|..+...
T Consensus 414 elf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 414 ELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 888777665 445554 4567778888888776665554 32333333333 345688888887777888877776
Q ss_pred cCC
Q 015246 407 KIS 409 (410)
Q Consensus 407 ~~~ 409 (410)
+|.
T Consensus 491 DP~ 493 (557)
T KOG3785|consen 491 DPT 493 (557)
T ss_pred CCC
Confidence 653
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=2e-10 Score=91.25 Aligned_cols=367 Identities=12% Similarity=0.097 Sum_probs=222.2
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--------------------
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI-------------------- 62 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------- 62 (410)
..++.+.|++++|+..++.+.+.. .++...+..+..++.-.|.+.+|..+-....+...
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 356788999999999999998865 56777777777777778888888776655432100
Q ss_pred -----CCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH-HHHHHhhcCchHHHHHHHHHHHhCCCCCCH
Q 015246 63 -----PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNI-MLNGLCKNRYTDNALRMFRGLQKHGFVPEL 136 (410)
Q Consensus 63 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (410)
.....--.+|.......-.+++|.+++.+++.. .|.-...|. +.-+|.+..-++-+.++++-..+. ++.++
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdSt 219 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDST 219 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcH
Confidence 000111122333333344577888888887755 344444443 344666777777788888777765 44345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH--------------hhCCC------------CC-----cHHHHHHHHHHHHhcc
Q 015246 137 VTYNILIKGLCKAGRLRTARWILKEL--------------GDSGH------------AP-----NAITYTTIMKCCFRNR 185 (410)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~~~~~------------~~-----~~~~~~~l~~~~~~~~ 185 (410)
...|..+....+.-+-..|..-.+.+ .+.++ -| -+..-..++-.|.+.+
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~ 299 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQN 299 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccc
Confidence 55554443333221111111111111 11100 01 1222334455677888
Q ss_pred chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCH
Q 015246 186 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-------RLKEATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKL 257 (410)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 257 (410)
+..+|..+.+++. |.++.-|..-.-.+...| ...-|.+.|+-.-+.+..-| ..--..+..++.-..++
T Consensus 300 dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 300 DVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 8888888777655 333333333223333333 24455666655544443323 23345566677777889
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 015246 258 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (410)
++++..++.+..--.. |......+.++.+..|++.+|.++|-.+....++.+..-...+..+|.+.+.++.|+.++-++
T Consensus 376 ddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 9999998888765333 333334578899999999999999988876544444433455678899999999999999887
Q ss_pred ccC-Cch-hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhH
Q 015246 338 EVK-DSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 380 (410)
Q Consensus 338 ~~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 380 (410)
..+ +.. ....+..-|.+.+.+--|.+.|+.+... .|++..|
T Consensus 455 ~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 455 NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 766 333 3444556778888888888888887654 4555444
No 70
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.49 E-value=4.2e-09 Score=90.42 Aligned_cols=385 Identities=14% Similarity=0.086 Sum_probs=259.0
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
+...|+-++|.+....-.+.+ ..+...|..+.-.+...+++++|++.|......+. .|...+.-+.-.-++.|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhH
Confidence 456788999999988888755 56788999999889899999999999999998653 3677888887778888898888
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHH
Q 015246 86 NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG-FVPELVTYNILI------KGLCKAGRLRTARWI 158 (410)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~ 158 (410)
...-..+.+.. +.....|..++.++.-.|+...|..+++...+.. ..|+...+.... ......|.++.|.+.
T Consensus 129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 88877777654 4556778888889999999999999999988764 245665554332 334567777888777
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHHcC-CHHHHHHHHHHHHHc-
Q 015246 159 LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT-VIAAFVKIG-RLKEATDYMEQMVTD- 235 (410)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~-~~~~a~~~~~~~~~~- 235 (410)
+...... +......-..-...+.+.+++++|..++..++.. .||...|.. +..++.+.. ..+....+|....+.
T Consensus 208 L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y 284 (700)
T KOG1156|consen 208 LLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY 284 (700)
T ss_pred HHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence 7665442 1112222234456778889999999999999888 455554443 334443222 222222444444332
Q ss_pred ---------------------------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh--------CC---
Q 015246 236 ---------------------------------GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK--------QG--- 271 (410)
Q Consensus 236 ---------------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~--- 271 (410)
|++ .++..+...|-.....+ +++++.. .|
T Consensus 285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p---~vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP---SVFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC---chhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCC
Confidence 221 11222222221111111 3332211 11
Q ss_pred -------CCCchH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhccC-
Q 015246 272 -------FECDKY--THTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFESMEVK- 340 (410)
Q Consensus 272 -------~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 340 (410)
-+|... ++..+++.+-..|+++.|..+++....+ .|+ ++.|..-.+.+...|++++|...+++..+.
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 133333 4455778889999999999999999986 455 566777778999999999999999998877
Q ss_pred --CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--c----HhhHHHH--HHHHhhcCCHHHHHHHHHHHHH
Q 015246 341 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI--L----KSAQKAV--VDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 341 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
|...-..-+.-..+.++.++|.++.....+.|..- + .-.|..+ +.+|.++|++..|.+-|..+.+
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 33333345566678999999999999888776411 1 1233333 4568889999888887776644
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.5e-09 Score=86.06 Aligned_cols=267 Identities=10% Similarity=-0.036 Sum_probs=106.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc-HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 134 PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 212 (410)
Q Consensus 134 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (410)
.|......+...+...|+.++|...|++....+ |+ ........-.+.+.|+++....+...+.... .-....|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 344444455555555555555555555444321 11 1111111222234444444444444443321 1111112222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCh
Q 015246 213 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 292 (410)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (410)
+......++++.|..+-++.+..+.. +...+-.-...+...+++++|.-.|+...... +.+...|..++.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 22223334444444444444433111 22222222334444455555555554444331 22344455555555555555
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHH-HHHH-ccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhHHHHHHH
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIV-DRLG-KDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
.+|...-+...+. ++.+..+...+. ..+. ....-++|.+++++....+| .....+...+...|+..+++.++++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 5544444443332 222333332221 1111 11122344444444443322 1233333444445555555555554
Q ss_pred HHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 368 CLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
.+.. .||....+.++..+...+.+++|.+.|....+.+|
T Consensus 464 ~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 464 HLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 4432 34444444455555555555555555544444443
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.49 E-value=3.5e-11 Score=103.70 Aligned_cols=237 Identities=16% Similarity=0.111 Sum_probs=176.4
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHc-----C-CCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRK-----G-YTFDGF-GYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV 237 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 237 (410)
-..+...+...|...|+++.|+.+++...+. | ..|... ..+.+...|...+++.+|..+|+++... |.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3556666888999999999999999987765 1 123333 3344777889999999999999998764 21
Q ss_pred --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhc---
Q 015246 238 --QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-----GF-ECD-KYTHTILIDGLCKAGNIKGARLHLEYMNKI--- 305 (410)
Q Consensus 238 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 305 (410)
+.-..+++.|..+|.+.|++++|...+++..+- +. .|. ...++.+...+...+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 112346777788899999999998888876431 11 222 234666777888999999999999876542
Q ss_pred CCCC----CHHHHHHHHHHHHccCChHHHHHHHHhhccC-----------CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 306 GFDS----NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 306 ~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
-+.+ -..++..+...|...|++++|.++++++... ....++.+...|.+.+++.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 1122 2467889999999999999999999988654 234577888899999999999998887653
Q ss_pred c------CCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 371 S------GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 371 ~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
- +.+....+|..|..+|.+.|+++.|.++.+++...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2 22223568899999999999999999999887643
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=1.9e-10 Score=95.15 Aligned_cols=226 Identities=13% Similarity=-0.039 Sum_probs=159.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCC-CCCc--HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 015246 146 LCKAGRLRTARWILKELGDSG-HAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 222 (410)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (410)
....+..+.++.-+.++.... ..|+ ...|..+...+...|++++|...|++..+.. +.+...|..+...+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 344566788888888887642 2222 4567777888899999999999999999886 66788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 223 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
++|...|+...+..+. +...+..+..++...|++++|.+.++...+.. |+..........+...++.++|...+++.
T Consensus 115 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999985322 46677888888999999999999999998764 33322222222344567899999999776
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc---cC-------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 303 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME---VK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
... ..|+... ..+.. ...|+...+ ..++.+. .. ....|..++..+...|++++|+..|++.++.+
T Consensus 192 ~~~-~~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEK-LDKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hhh-CCccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 543 2333222 22222 334554433 2333332 11 34578899999999999999999999999775
Q ss_pred CCCcHhhHH
Q 015246 373 VRILKSAQK 381 (410)
Q Consensus 373 ~~~~~~~~~ 381 (410)
+|+..-+.
T Consensus 267 -~~~~~e~~ 274 (296)
T PRK11189 267 -VYNFVEHR 274 (296)
T ss_pred -CchHHHHH
Confidence 44544443
No 74
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.44 E-value=3.8e-08 Score=84.69 Aligned_cols=260 Identities=11% Similarity=0.074 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc---HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCC-----------C
Q 015246 139 YNILIKGLCKAGRLRTARWILKELGDSGHAPN---AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-----------F 204 (410)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~ 204 (410)
|..+...|-..|+++.|..+|++..+...+-- ..+|..-...-.+..+++.|.++++......-+ +
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 44455555556666666666665554322111 223333333334445555555555544322100 0
Q ss_pred ------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch-H
Q 015246 205 ------DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK-Y 277 (410)
Q Consensus 205 ------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 277 (410)
+...|...+..-...|-++....+++.+.+..+. ++.........+-.+.-++++.+++++-...=..|+. .
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 1122333333334445555555555555554332 2222222222233344455555555544433222332 2
Q ss_pred HHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCHHHHHHHH--HHHHccCChHHHHHHHHhhccC-----CchhHHH
Q 015246 278 THTILIDGLCK---AGNIKGARLHLEYMNKIGFDSNLEAYNCIV--DRLGKDGKIDHAINVFESMEVK-----DSFTYSS 347 (410)
Q Consensus 278 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ 347 (410)
.|+..+..+.+ ...++.|..+|++.++ |.+|...-+..++ ..--+.|-...|..++++.... -...|+.
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni 627 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNI 627 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34433333322 2356777777777777 4555432222222 2223446666677777766544 1223444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHH---HHHHHHhhcCCHHHHHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK---AVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~ 402 (410)
.|.--...=-+.....+|+++++. -|+...-. .....-++.|..+.|+.++..
T Consensus 628 ~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~ 683 (835)
T KOG2047|consen 628 YIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAH 683 (835)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 443322222233444455555543 22222211 112223455555555555543
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.43 E-value=5.6e-10 Score=92.36 Aligned_cols=224 Identities=12% Similarity=-0.028 Sum_probs=155.2
Q ss_pred HHhhcCchHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGF-VP--ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK 186 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (410)
.....+..+.++.-+.++..... .| ....|..+...+...|++++|...|++..+..+ .+...|+.+...+...|+
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGN 113 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCC
Confidence 33445677788888888875421 22 245577788888999999999999999888643 367888889999999999
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 187 YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 266 (410)
+++|...|++..+.. +.+..++..+..++...|++++|.+.++...+.. |+..............++.++|...+.+
T Consensus 114 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 114 FDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999999998875 4556778888888889999999999999988753 3322222222234456789999999977
Q ss_pred HHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc---CC---CCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 267 MEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI---GF---DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
..... .|+... .. ......|+...+ ..+..+.+. .. +.....|..+...+...|++++|...|++....
T Consensus 191 ~~~~~-~~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEKL-DKEQWG-WN--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhhC-CccccH-HH--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 65432 222221 22 223345555444 344444421 11 112457888899999999999999999988876
Q ss_pred Cc
Q 015246 341 DS 342 (410)
Q Consensus 341 ~~ 342 (410)
++
T Consensus 266 ~~ 267 (296)
T PRK11189 266 NV 267 (296)
T ss_pred CC
Confidence 54
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.43 E-value=5.6e-10 Score=83.48 Aligned_cols=199 Identities=15% Similarity=0.046 Sum_probs=135.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 147 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (410)
+...|.-.|...|++..|.+-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..+... -+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 34455666777777777777777777765 55667777777777777777777777777776532 25666777777777
Q ss_pred hcCCHHHHHHHHHHHhhCCCC-CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHH
Q 015246 148 KAGRLRTARWILKELGDSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 226 (410)
..|.+++|...|++......- -...+|..+.-|..+.|+++.|...|++.++.. +-...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777777654211 124566667777777777777777777777664 444555666667777777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
..++.....+. ++..+.-..|+.-...|+.+.+.+.=..+...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77777766644 56666666666666777777666655555544
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.6e-09 Score=86.81 Aligned_cols=295 Identities=13% Similarity=0.045 Sum_probs=216.9
Q ss_pred cCChhHHHHHHHHHhcC-CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 015246 79 LGKPDEANRVFQDMICG-DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARW 157 (410)
Q Consensus 79 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 157 (410)
.++...+.+.+-.+... -++-|+.....+..++...|+.++|...|++....++- +........-.+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHH
Confidence 44444454444433332 34678888999999999999999999999998875211 22222333445667888988888
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 015246 158 ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 237 (410)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 237 (410)
+...+.... .-....|-.-+.......++..|+.+.++.++.+ +.+...+..-...+...+++++|.-.|+..... -
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-a 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML-A 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc-c
Confidence 888776532 1233344444455567789999999999998876 556667777778889999999999999998875 2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH-HHHH-hcCChhHHHHHHHHHHhcCCCCC-HHHH
Q 015246 238 QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI-DGLC-KAGNIKGARLHLEYMNKIGFDSN-LEAY 314 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 314 (410)
+-+...|.-++.+|...|++.+|...-+...+. ++.+..+...+. ..|. ....-++|.++++...+. .|+ ....
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 347899999999999999999999888776654 233555555542 2222 233457899999988874 455 4566
Q ss_pred HHHHHHHHccCChHHHHHHHHhhccC--CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHH
Q 015246 315 NCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 381 (410)
Q Consensus 315 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 381 (410)
..+...+...|..+.++.+++..... |....+.|...+...+.+++|++.|..++..+ |.|..+..
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl~ 509 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTLR 509 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHHH
Confidence 77888999999999999999988766 88899999999999999999999999998664 33444443
No 78
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2.5e-09 Score=83.19 Aligned_cols=387 Identities=12% Similarity=0.056 Sum_probs=225.2
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHH-HHHHHHhcC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNS-LMHCLFQLG 80 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~ 80 (410)
++..+.+..++++|++++....+.. +.+......+..+|-...++..|-+.++++... .|...-|.. -...+.+.+
T Consensus 16 viy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 16 VVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhc
Confidence 4556678888888888888877764 347777888888888888888888888888764 344443332 244566778
Q ss_pred ChhHHHHHHHHHhcCCCCCChh--HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015246 81 KPDEANRVFQDMICGDLTPCTA--TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 158 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 158 (410)
.+..|+.+...|... |+.. +...-.......+++..+..++++....| +..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 888888888777542 2221 11112223345777888888887776432 344444445556688899999998
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCC-------------Chh---------------hHH
Q 015246 159 LKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF-------------DGF---------------GYC 210 (410)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~---------------~~~ 210 (410)
|+...+.+--.....|+.. -+..+.++++.|++...++.+.|++. |.. .++
T Consensus 167 FqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 8888775433344556543 45567788999999988888776431 111 123
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
.-...+.+.++++.|.+.+..|.-+ ....|+.|...+.-. -..+++.+..+-+.-+...+. ....||..++-.|++.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 3333455677888888777776533 123455555544322 223455555565666666543 4566788888888888
Q ss_pred CChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHH-HHHH-HHhcCCh----hhHH
Q 015246 290 GNIKGARLHLEYMNKIGFD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSS-MVHN-LCKAKRL----PSAS 362 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l~~~-~~~~~~~----~~A~ 362 (410)
.-++.|-.++.+-...... .+...|+.+=....-.-..++|.+-++.+...-..-... .+.. -.+..+- ..|+
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai 403 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAV 403 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 8888877776542221111 123333333222333445666666655544331111111 1111 1111221 2233
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 363 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
+-|++.++. -........+.|++..++..+.++|..-.
T Consensus 404 ~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 404 NEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 333333322 11233445566788899999999887643
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=7.7e-10 Score=95.61 Aligned_cols=232 Identities=17% Similarity=0.109 Sum_probs=118.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCcHHH-HHHHHHHHHhccchhHHHHHHHHHHHc-----C--CC
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDS-----GH-APNAIT-YTTIMKCCFRNRKYKLGLEILSAMKRK-----G--YT 203 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 203 (410)
+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333445555555555555555444331 10 122221 222444555555555555555555432 1 01
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC
Q 015246 204 FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV-QLDI-VSYNTLINLYCKEGKLEAAYLLLDEMEKQ---GFE 273 (410)
Q Consensus 204 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 273 (410)
.-..+++.|..+|.+.|++++|...++...+- +. .|.. ..++.+...+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 11223444455555666655555555444321 11 1111 22344445566666666666666554321 111
Q ss_pred C----chHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C---CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--
Q 015246 274 C----DKYTHTILIDGLCKAGNIKGARLHLEYMNKI----G---FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 340 (410)
Q Consensus 274 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 340 (410)
+ -..++..+...|...|++++|.++++.++.. + ..-....++.+...|.+.+.+.+|.++|.+....
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 1 1345666777777777777777777665532 1 1112345566666677777777666666654322
Q ss_pred --------CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 341 --------DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 341 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
...+|..|+..|...|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23456777777777777777777776655
No 80
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6e-09 Score=87.58 Aligned_cols=359 Identities=16% Similarity=0.120 Sum_probs=203.5
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 83 (410)
+.+..|+++.|+..|.+..... +++...|..-..+|++.|++++|++=-.+-.+. .|+ ...|.....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4577899999999999999887 568889999999999999999998877776664 344 467888999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHH---HHHHHHHhC---CCCCCHHHHHHHHHHH----------H
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL---RMFRGLQKH---GFVPELVTYNILIKGL----------C 147 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~----------~ 147 (410)
+|...|.+-++.. +.+...++.+..++.......+.. .++..+... ........|..++..+ .
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999988775 667777777777762211000000 000000000 0000011111111111 1
Q ss_pred hcCCHHHHHHHHHHH-----hhC-------CCCC----------------------cHHHHHHHHHHHHhccchhHHHHH
Q 015246 148 KAGRLRTARWILKEL-----GDS-------GHAP----------------------NAITYTTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 148 ~~~~~~~a~~~~~~~-----~~~-------~~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~~ 193 (410)
.-..+..+...+... ... +..| -..-...+.+...+..++..+++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 100111111111100 000 0000 011234456666666777777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH-------HHHHHHHhcCCHHHHHHHHHH
Q 015246 194 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN-------TLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~~ 266 (410)
+....+.. .+..-++....+|...|.+......-....+.|.. ...-|+ .+..+|.+.++++.+...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 77766653 34444555566666666666666555555544322 111122 223345555666667666666
Q ss_pred HHhCCCCCchHH-------------------------HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 267 MEKQGFECDKYT-------------------------HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 267 ~~~~~~~~~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
.......|+... ...-...+.+.|++..|...|.++++.. +.|...|....-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 544322222111 1112334456677777777777766653 44566666666777
Q ss_pred HccCChHHHHHHHHhhccCCch---hHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 322 GKDGKIDHAINVFESMEVKDSF---TYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.+.|.+..|+.-.+...+.++. .|..-+.++....+++.|++.|++.++.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777776666655555333 3333444555566677777777776655
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=1.2e-09 Score=81.69 Aligned_cols=199 Identities=16% Similarity=0.102 Sum_probs=156.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
+...+.-.|...|+...|..-+++.++.+. .+..++..+...|-+.|+.+.|.+.|+..++.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 455667788888999999999988888643 256778888888888899999999998888776 667788888888888
Q ss_pred hcCchHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH
Q 015246 113 KNRYTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
..|.+++|...|++..... ...-..+|..+.-+..+.|+++.|...|++..+.... ...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8889999999888887652 2223567778888888889999999998888775432 3456667778888888998888
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
..++.....+ .++..+....++.-...|+.+.+-+.=..+...
T Consensus 194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 8888888776 478888888888888888888888776666654
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=4.4e-08 Score=83.44 Aligned_cols=364 Identities=17% Similarity=0.098 Sum_probs=219.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc
Q 015246 37 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY 116 (410)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (410)
=+..+...+++++|.+...++...+ +.+...+..-+-+.++.+.+++|+.+.+.-... ..+...+.--.-+..+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 3566678899999999999999875 446677777777889999999999766542211 1111111122345557899
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---------------------------C
Q 015246 117 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA---------------------------P 169 (410)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~ 169 (410)
.++|+..++-+.+. +..+...-...+.+.|++++|..+|+.+.+.+.+ .
T Consensus 95 ~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 95 LDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 99999999833332 4456677788899999999999999998554321 0
Q ss_pred cHHHHHHHH---HHHHhccchhHHHHHHHHHHHcC-------CCCChh-------hHHHHHHHHHHcCCHHHHHHHHHHH
Q 015246 170 NAITYTTIM---KCCFRNRKYKLGLEILSAMKRKG-------YTFDGF-------GYCTVIAAFVKIGRLKEATDYMEQM 232 (410)
Q Consensus 170 ~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~ 232 (410)
...+|..+. ..+...|++.+|+++++...+.+ -..+.. .-..+..++-..|+.++|..++..+
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 122343333 34567899999999999883221 011111 1223444566789999999999998
Q ss_pred HHcCCCCChhhHHHHHHHHH---hcCC-HH----------------HHHHHH-------------------------HHH
Q 015246 233 VTDGVQLDIVSYNTLINLYC---KEGK-LE----------------AAYLLL-------------------------DEM 267 (410)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~---~~~~-~~----------------~a~~~~-------------------------~~~ 267 (410)
+..... |.........-+. .-.+ ++ .+..-| ++.
T Consensus 251 i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 887432 3322111111110 0000 00 000000 000
Q ss_pred HhC--CCCCchHHHHHHHHHHHh--cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH--------
Q 015246 268 EKQ--GFECDKYTHTILIDGLCK--AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE-------- 335 (410)
Q Consensus 268 ~~~--~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------- 335 (410)
... +..| ...+..++..+.+ ...+..+..++....+........+.-..+......|+++.|.+++.
T Consensus 330 ~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 330 SASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 000 1111 2233333333322 12356666777666654322234556667778889999999999998
Q ss_pred hhccC--CchhHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCCc----HhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 336 SMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS--GVRIL----KSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 336 ~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
.+.+. .+.+...+...+.+.++.+.|..++.+++.. .-.+. ..++..++..-.+.|+.++|.+.++++.+.+
T Consensus 409 s~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 409 SILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 33332 5667777777888888888788777776632 00111 2334444444567799999999999998866
Q ss_pred CC
Q 015246 408 IS 409 (410)
Q Consensus 408 ~~ 409 (410)
++
T Consensus 489 ~~ 490 (652)
T KOG2376|consen 489 PN 490 (652)
T ss_pred Cc
Confidence 54
No 83
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.37 E-value=8e-11 Score=104.14 Aligned_cols=271 Identities=16% Similarity=0.096 Sum_probs=157.2
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC
Q 015246 52 DLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG 131 (410)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 131 (410)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45666777788888888888888888888888877 7877777777777788888888877777766665
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc-CCCCChhhHH
Q 015246 132 FVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYC 210 (410)
Q Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~ 210 (410)
.|.+.+|..|..+|...||+.. |+...+ -...+...+...|.-.....++..+.-. +.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~--- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE--- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---
Confidence 4677788888888888887665 222221 1122333444455544444444433211 2233332
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 290 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (410)
..+....-.|-++.+.+++..+...... .+ ...+++-... ...-..+++.......-.|++.+|..++.+-...|
T Consensus 144 n~illlv~eglwaqllkll~~~Pvsa~~-~p--~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 144 NAILLLVLEGLWAQLLKLLAKVPVSAWN-AP--FQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCccccc-ch--HHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence 2333344455666666665444322100 00 1111222221 22233333333332222467777777777777778
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC----CchhHHHHHHHHHhcCC
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKR 357 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~ 357 (410)
+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..++..|... +..++...+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888888777777776666665544 55555555555555443 55566555555555443
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.36 E-value=2.7e-08 Score=85.65 Aligned_cols=92 Identities=18% Similarity=0.143 Sum_probs=46.6
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCh--hhHHHHHHHHH
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LDI--VSYNTLINLYC 252 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~ 252 (410)
.+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++....... |+. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33445555555555555555555543 333444455555555556666666555555543211 111 12334445555
Q ss_pred hcCCHHHHHHHHHHHH
Q 015246 253 KEGKLEAAYLLLDEME 268 (410)
Q Consensus 253 ~~~~~~~a~~~~~~~~ 268 (410)
..|++++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 5566666666665553
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.35 E-value=6.1e-11 Score=96.46 Aligned_cols=248 Identities=13% Similarity=0.067 Sum_probs=141.6
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchh
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 188 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (410)
+-+.-.|.+..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34445677777776555 222222223344555677788888766543 3333322 455555555544444334444
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 189 LGLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 189 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
.++.-++......... +..........+...|++++|++++... .+.......+.++.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444433332222 2222223334455667888888777542 35666667777888888888888888888
Q ss_pred HhCCCCCchHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---
Q 015246 268 EKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 340 (410)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 340 (410)
.+.+ +..+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.++.+....|++++|.+++.+....
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 7652 33444455554433 23577888888887654 5667777777888888888888888888776655
Q ss_pred CchhHHHHHHHHHhcCCh-hhHHHHHHHHHHc
Q 015246 341 DSFTYSSMVHNLCKAKRL-PSASKLLLSCLKS 371 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~ 371 (410)
++.+...++.+....|+. +.+.+.+.++...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 555666666666667776 4556666666543
No 86
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=3.4e-12 Score=73.95 Aligned_cols=47 Identities=40% Similarity=0.800 Sum_probs=20.0
Q ss_pred ChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015246 100 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 146 (410)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (410)
|..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.+++++
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 87
>PF13041 PPR_2: PPR repeat family
Probab=99.35 E-value=3.8e-12 Score=73.78 Aligned_cols=49 Identities=45% Similarity=0.752 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLF 77 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (410)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.3e-09 Score=84.63 Aligned_cols=351 Identities=13% Similarity=0.098 Sum_probs=162.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH-HHHHHh
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNI-MLNGLC 112 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 112 (410)
+.+.+..+.+..++++|++++..-.++.. .+......|..+|....++..|-..++++... .|...-|.. -.+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 44455555556666666666655555421 14445555555666666666666666665543 233333321 234445
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHH
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIK--GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 190 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (410)
+.+.+..|+.+...|... |+...-..-+. .....+++..+..++++.... .+..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 555666666666555442 12111111111 122345555555555554432 1223333333334455666666
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH--HH
Q 015246 191 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE--ME 268 (410)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~ 268 (410)
.+-|+...+.+---....|+..+ +..+.++++.|.+...+++++|++..+..---+ . ..-++ +..+=+. |.
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm----~-tegiD-vrsvgNt~~lh 236 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGM----T-TEGID-VRSVGNTLVLH 236 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc----e-eccCc-hhcccchHHHH
Confidence 66665555543222233344333 233445556666666666555554322210000 0 00000 0000000 00
Q ss_pred hCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCCHHHHHHHHHHH--HccCChHHHHHHHHhhccCCchhH
Q 015246 269 KQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI-GFDSNLEAYNCIVDRL--GKDGKIDHAINVFESMEVKDSFTY 345 (410)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~ 345 (410)
..+ =...++.-...+.+.++++.|.+.+-.|--. ....|+.+...+.-.- .+-++--.-+.++-....-.+.+|
T Consensus 237 ~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 237 QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETF 313 (459)
T ss_pred HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHH
Confidence 000 0112333333445678888887777666421 1223445554433222 222232233333333322277788
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH-hhcCCHHHHHHHHHHH
Q 015246 346 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL-RHSGCRREAKKIQSKI 403 (410)
Q Consensus 346 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~ 403 (410)
..++-.|+++.-++-|..++.+=-..-+.--......++.++ ...-.+++|.+-++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888888888888888877776532221111122233455554 4456778887776665
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.32 E-value=3.2e-08 Score=78.74 Aligned_cols=300 Identities=13% Similarity=0.045 Sum_probs=164.9
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY-NILI 143 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~ 143 (410)
++.-..-+...+...|++..|+.-|...++.+ +.+-.++..-...|...|....|+.=+....+. +||-..- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 44445566777777888888888887777543 333444444556777778888888878777764 4553322 1223
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCc--HHHH------------HHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 015246 144 KGLCKAGRLRTARWILKELGDSGHAPN--AITY------------TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209 (410)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (410)
..+.+.|.++.|..-|+...+.....+ ...+ ...+..+...|+...++.....+++.. +.|...+
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 556778888888888888877543211 1111 112333455666777777777666654 5566666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH----HHHHH---
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY----THTIL--- 282 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l--- 282 (410)
..-..+|...|++..|+.-+....+. ...+...+-.+-..+...|+.+.++...++..+. .||.. .|..+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 66667777777777776666655554 2234555555566666677777777766666655 33322 11111
Q ss_pred HHH------HHhcCChhHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHH
Q 015246 283 IDG------LCKAGNIKGARLHLEYMNKIGFDS---NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVH 350 (410)
Q Consensus 283 ~~~------~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 350 (410)
... ....+++.++....+...+..... ....+..+-.++...|.+.+|++...++... |..++..-..
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 111 112334444444444444432110 1122233334444555555555555554443 3334444445
Q ss_pred HHHhcCChhhHHHHHHHHHHc
Q 015246 351 NLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+|.-...++.|+.-|+.+.+.
T Consensus 350 A~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhc
Confidence 555555555555555555543
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.30 E-value=8e-08 Score=82.73 Aligned_cols=271 Identities=8% Similarity=-0.010 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCCh-HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH--
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI-PPDV-WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNI-- 106 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 106 (410)
...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|.+.+++..... |.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44566666666677777777666666554321 1121 112222334566788888888888877654 444444442
Q ss_pred -HHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 107 -MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 107 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
........+..+.+.+.++... ...+........+...+...|++++|...+++..+... .+...+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcC
Confidence 1111122344555555554411 11222334445566777888888888888888887542 34566777778888888
Q ss_pred chhHHHHHHHHHHHcCC-CCCh--hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCChhhH-H--HHHHHHHhcCCHH
Q 015246 186 KYKLGLEILSAMKRKGY-TFDG--FGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDIVSY-N--TLINLYCKEGKLE 258 (410)
Q Consensus 186 ~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~ 258 (410)
++++|...+++...... .++. ..+..+...+...|++++|..++++...... .+..... + .++..+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 88888888888776531 1222 2344677778888999999999888754322 1111111 1 1222223333322
Q ss_pred HHHHH--HHHH-HhCCC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 259 AAYLL--LDEM-EKQGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 259 ~a~~~--~~~~-~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.+.+. +... ..... ............++...|+.+.|...++.+..
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 22221 1111 11100 11111222455566677777888777777655
No 91
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=3.5e-07 Score=80.64 Aligned_cols=377 Identities=13% Similarity=0.045 Sum_probs=233.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh-hHHH
Q 015246 27 ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT-ATFN 105 (410)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 105 (410)
+..+...|..+.-++...|+++.+.+.|++....-+ -....|..+...+...|.-..|..+++......-.|+. ..+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 456778888888888889999999999988775433 25567888888888888888888888876554322433 3333
Q ss_pred HHHHHHh-hcCchHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCC
Q 015246 106 IMLNGLC-KNRYTDNALRMFRGLQKH--GF--VPELVTYNILIKGLCKA-----------GRLRTARWILKELGDSGHAP 169 (410)
Q Consensus 106 ~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 169 (410)
.....|. +.+..++++.+-.++... +. ...+..|..+.-+|... ....++.+.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 3333333 345666666666555541 11 11233444444444321 1245667777777665432
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
|+.....+.--|...++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+...+. ...|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FGDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hhhhhhhchhhhh
Confidence 223333344456677888999999999888865778888888888888889999999988887764 1112221112222
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---------------------CC-------CCchHHHHHHHHHHHhcCChhHHHHHHHH
Q 015246 250 LYCKEGKLEAAYLLLDEMEKQ---------------------GF-------ECDKYTHTILIDGLCKAGNIKGARLHLEY 301 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~---------------------~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 301 (410)
.-...++.++++.....+... |. .-...++..+..-....+....-...
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence 223355555555444333210 00 00111222221111100000000000
Q ss_pred HHhcCCC--CC------HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 302 MNKIGFD--SN------LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 302 ~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
+.+.... |+ ...|......+.+.+..++|...+.+.... ....|...+..+...|...+|.+.|.....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 1111111 22 234556677888999999999888887766 556677777888899999999999999986
Q ss_pred cCCCCcHhhHHHHHHHHhhcCCHHHHHH--HHHHHHHccCCC
Q 015246 371 SGVRILKSAQKAVVDGLRHSGCRREAKK--IQSKIRMAKISH 410 (410)
Q Consensus 371 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~ 410 (410)
.+ |.++.....++..+.+.|+...|.. ++..+.+.++.+
T Consensus 713 ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n 753 (799)
T KOG4162|consen 713 LD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN 753 (799)
T ss_pred cC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC
Confidence 64 4467888999999999999888877 899888888754
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.1e-07 Score=80.18 Aligned_cols=363 Identities=13% Similarity=0.040 Sum_probs=238.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-hhHHHHHHHHHhhcCch
Q 015246 39 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC-TATFNIMLNGLCKNRYT 117 (410)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 117 (410)
.+.+..|+++.|...|-+...... +|...|..-..+|+..|++++|.+=-.+-.+. .|+ ...|.-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 456688999999999999988754 37778888999999999999998866665554 444 56788888999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHhhCC---CCCcHHHHHHHHHHHHhc-------
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA---RWILKELGDSG---HAPNAITYTTIMKCCFRN------- 184 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~------- 184 (410)
++|..-|.+-.+.. +.|...++-+..++.......+. -.++..+.... .......|..++...-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988863 33666777777766211000000 00111110000 000011122222111100
Q ss_pred cchhHHHHHHHHHH--------H-------cCCCC----------------------ChhhHHHHHHHHHHcCCHHHHHH
Q 015246 185 RKYKLGLEILSAMK--------R-------KGYTF----------------------DGFGYCTVIAAFVKIGRLKEATD 227 (410)
Q Consensus 185 ~~~~~a~~~~~~~~--------~-------~~~~~----------------------~~~~~~~l~~~~~~~~~~~~a~~ 227 (410)
.+.+...+....+. . .+..| -..-...+..+..+..+++.+.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 00011111111000 0 00011 11236678888888999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH-------HHHHHHHhcCChhHHHHHHH
Q 015246 228 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT-------ILIDGLCKAGNIKGARLHLE 300 (410)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~~ 300 (410)
-+....+.. .+..-++....+|...|.+..+...-....+.|-. ...-|+ .+..++.+.++++.++..|.
T Consensus 246 ~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 246 HYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 999998864 46666777778899999888887777776665532 222222 34446667788899999988
Q ss_pred HHHhcCCCCCHHH-------------------------HHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHH
Q 015246 301 YMNKIGFDSNLEA-------------------------YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 352 (410)
Q Consensus 301 ~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 352 (410)
+.......|+... ...-...+.+.|++..|...+.+++.. |...|.....+|
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 8765433333211 112245667889999999999988776 778899999999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 353 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
.+.|.+..|+.-.+..++.+ ++....|..-+.++....+++.|.+.|.+..+.++.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999999999998774 555666766677788888999999999988887764
No 93
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.25 E-value=1e-07 Score=92.63 Aligned_cols=333 Identities=13% Similarity=-0.002 Sum_probs=199.6
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCC--C----CCC--hhHHHHHHHHH
Q 015246 40 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGD--L----TPC--TATFNIMLNGL 111 (410)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~--~~~~~~l~~~~ 111 (410)
.....|+++.+..+++.+.......+..........+...|+++++..++......- . .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777766666655321111122233444555667888999888887765321 0 111 12222334455
Q ss_pred hhcCchHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CCcHHHHHHHHHHHH
Q 015246 112 CKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDS----GH-APNAITYTTIMKCCF 182 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~ 182 (410)
...|++++|...+++....-...+. ...+.+...+...|++++|...+++.... +. .........+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788999999998887663111121 23455666677889999998888877542 11 111234455566778
Q ss_pred hccchhHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--ChhhHHHHHHHH
Q 015246 183 RNRKYKLGLEILSAMKRK----GYT--F-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--VQL--DIVSYNTLINLY 251 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~ 251 (410)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999998888876643 211 1 12234445556677799999988888775531 111 123344455677
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCchH--H-H-HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHHHHHHHHHH
Q 015246 252 CKEGKLEAAYLLLDEMEKQG--FECDKY--T-H-TILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAYNCIVDRLG 322 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~--~~~~~~--~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 322 (410)
...|+++.|...+....... ...... . . ...+..+...|+.+.|..++........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78899999988888775421 111110 0 0 1112334557888888888776554211111 111345667788
Q ss_pred ccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 323 KDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
..|++++|...+++.... ...+...+..++...|+.++|...+.++++..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 889999998888877543 12345566677888999999999999888654
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.24 E-value=3.6e-07 Score=88.97 Aligned_cols=333 Identities=8% Similarity=-0.014 Sum_probs=213.3
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCC------CCC--HHHHHHHHHH
Q 015246 74 HCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF------VPE--LVTYNILIKG 145 (410)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~ 145 (410)
......|+++.+..+++.+.......+..........+...|+++++...+......-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777776653211112222334445566678999999999988754311 111 1122233455
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCcH----HHHHHHHHHHHhccchhHHHHHHHHHHHcCC---CC--ChhhHHHHHHHH
Q 015246 146 LCKAGRLRTARWILKELGDSGHAPNA----ITYTTIMKCCFRNRKYKLGLEILSAMKRKGY---TF--DGFGYCTVIAAF 216 (410)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 216 (410)
+...|+++.|...++.........+. ...+.+...+...|+++.|...+.+.....- .+ ...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999987663211221 2345556677889999999999988775311 11 123445566778
Q ss_pred HHcCCHHHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--chHHHHHHHHH
Q 015246 217 VKIGRLKEATDYMEQMVTD----GVQ--L-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG--FEC--DKYTHTILIDG 285 (410)
Q Consensus 217 ~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~ 285 (410)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998887653 211 1 12234455566777899999999998875431 112 23344556677
Q ss_pred HHhcCChhHHHHHHHHHHhcC--CCCCHH--HH--HHHHHHHHccCChHHHHHHHHhhccC---Cch----hHHHHHHHH
Q 015246 286 LCKAGNIKGARLHLEYMNKIG--FDSNLE--AY--NCIVDRLGKDGKIDHAINVFESMEVK---DSF----TYSSMVHNL 352 (410)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~l~~~~ 352 (410)
....|+++.|...++...... ...... .. ...+..+...|+.+.|...+...... ... .+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 788999999999998875421 111111 00 11224445688999999998776554 111 134567778
Q ss_pred HhcCChhhHHHHHHHHHHc----CCCCc-HhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 353 CKAKRLPSASKLLLSCLKS----GVRIL-KSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
...|++++|...++++... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999988753 32222 245666777899999999999999988654
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.23 E-value=2.2e-09 Score=87.44 Aligned_cols=81 Identities=21% Similarity=0.117 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCh-hHHHHHHH
Q 015246 222 LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI-KGARLHLE 300 (410)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~ 300 (410)
+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +-++.+...++.+....|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 44444444444332 33344444444444445555555555544444332 11333444444444444444 33444444
Q ss_pred HHHh
Q 015246 301 YMNK 304 (410)
Q Consensus 301 ~~~~ 304 (410)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 4443
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.14 E-value=1.5e-06 Score=69.45 Aligned_cols=304 Identities=13% Similarity=0.038 Sum_probs=217.2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhH-HHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTAT-FNIM 107 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l 107 (410)
.++.-..-+...+...|++..|+.-|....+.++ .+-.++..-...|...|+...|+.=++++++. +||-.. -.--
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3445555677788889999999999988877421 12334444556788899999999988888865 566332 2233
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCC--HHH------------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHH
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPE--LVT------------YNILIKGLCKAGRLRTARWILKELGDSGHAPNAIT 173 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (410)
...+.+.|.++.|..=|+.+.+.....+ ... ....+..+...|+...|+.....+.+..+ -+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHH
Confidence 4567889999999999999988643211 111 12234456678999999999999988533 37777
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh----HH---H
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS----YN---T 246 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~---~ 246 (410)
+..-..+|...|++..|+.-++...+.. ..+..++-.+-..+...|+.+.++...++.++. .|+... |. .
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 8888899999999999998888877765 445666666778888999999999999988874 444432 22 2
Q ss_pred HHHHH------HhcCCHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 015246 247 LINLY------CKEGKLEAAYLLLDEMEKQGFECDK---YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 317 (410)
Q Consensus 247 l~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 317 (410)
+...+ ...++|.++.+-.+...+....... ..+..+-.++...+++.+|++...++++.. +.|..++..-
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dR 347 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHH
Confidence 22222 2345677777777777665332122 234455566777899999999999999852 3348889989
Q ss_pred HHHHHccCChHHHHHHHHhhccC
Q 015246 318 VDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
..+|.-...++.|+.-|+...+.
T Consensus 348 AeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhc
Confidence 99999999999999999988766
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=2.4e-08 Score=84.88 Aligned_cols=251 Identities=12% Similarity=0.036 Sum_probs=183.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHH
Q 015246 144 KGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK 223 (410)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (410)
.-+.+.|++.+|.-.|+...+..+ -+...|..|.......++-..|+..+.+..+.. +.+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 345678889999889988887643 367888888888888888889999999998886 666777888888888889888
Q ss_pred HHHHHHHHHHHcCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHhcCChhH
Q 015246 224 EATDYMEQMVTDGVQL--------DIVSYNTLINLYCKEGKLEAAYLLLDEME-KQGFECDKYTHTILIDGLCKAGNIKG 294 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (410)
.|.+.++..+...++- +...-.. ..+..........++|-++. ..+..+|+.+...|.-.|.-.|+++.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999988887642110 0000000 11112222344455555554 44445788888899888999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 295 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 295 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
|...|+.++... +.|..+|+.|...++...+.++|+..|.+.... -+.+...|..+|...|.+.+|.+.|-.++..
T Consensus 449 aiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 449 AVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999998853 456788999999999999999999999988766 4567788888999999999999988776633
Q ss_pred C---------CCCcHhhHHHHHHHHhhcCCHHHHHHH
Q 015246 372 G---------VRILKSAQKAVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 372 ~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~ 399 (410)
. ..++...|..|-.++.-.++.|-+.+.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 112345777777777777777755544
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=4.9e-08 Score=83.00 Aligned_cols=252 Identities=11% Similarity=-0.020 Sum_probs=139.6
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHH
Q 015246 40 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN 119 (410)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (410)
-+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+.+..+.+ +.+....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 344566666666666666554322 45566666666666666666666666666554 4455555566666666666666
Q ss_pred HHHHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHH-hhCCCCCcHHHHHHHHHHHHhccchhHH
Q 015246 120 ALRMFRGLQKHGFVP--------ELVTYNILIKGLCKAGRLRTARWILKEL-GDSGHAPNAITYTTIMKCCFRNRKYKLG 190 (410)
Q Consensus 120 a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (410)
|+.+++......++- +...-.. ..+.....+....++|-++ ...+..+|+.+...|.-.|...|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 666666654431100 0000000 0111111223333333333 3334345666666666677777777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015246 191 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
.+.|+.++... |-|...|+.|...+....+.++|+..|.+.++. .|+ +.+...|.-+|...|.+++|.+.|-..+.
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 77777777665 556667777777777777777777777777764 333 34444555567777777777776665532
Q ss_pred C---------CCCCchHHHHHHHHHHHhcCChhHHHHH
Q 015246 270 Q---------GFECDKYTHTILIDGLCKAGNIKGARLH 298 (410)
Q Consensus 270 ~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 298 (410)
. ...++...|..|=.++...++.+.+...
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1122344555555555556665544433
No 99
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.5e-06 Score=77.44 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=41.1
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc----------CC----------------CCC----HHHHHHHHHHHH
Q 015246 273 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----------GF----------------DSN----LEAYNCIVDRLG 322 (410)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~----------------~~~----~~~~~~l~~~~~ 322 (410)
..|+...+....-+....++++|..++-...+. |+ .|+ ......+...|.
T Consensus 1077 ~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence 446666777777777777777776665443211 11 122 235566778888
Q ss_pred ccCChHHHHHHHHhhc
Q 015246 323 KDGKIDHAINVFESME 338 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~ 338 (410)
++|.+..|.+-|.+.-
T Consensus 1157 qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1157 QQGAYHAATKKFTQAG 1172 (1416)
T ss_pred hccchHHHHHHHhhhh
Confidence 9999888877776543
No 100
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.06 E-value=3.3e-07 Score=80.58 Aligned_cols=314 Identities=18% Similarity=0.194 Sum_probs=179.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc
Q 015246 35 NSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 114 (410)
Q Consensus 35 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (410)
.+.++.+...|+-++|-++- .. +..+ .+.|..|.+.|.+..|......=. .+..|......+..++.+.
T Consensus 593 ~sy~q~l~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~--~l~~de~il~~ia~alik~ 661 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDE--ELLADEEILEHIAAALIKG 661 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHH--HhhccHHHHHHHHHHHHhh
Confidence 34455566666666654432 11 1122 235677888888777765432111 1123344444444444443
Q ss_pred CchHHHHHHHHHHHhC----------------------CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcH
Q 015246 115 RYTDNALRMFRGLQKH----------------------GFVPELVTY-NILIKGLCKAGRLRTARWILKELGDSGHAPNA 171 (410)
Q Consensus 115 ~~~~~a~~~~~~~~~~----------------------~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 171 (410)
.-+++|-.+|+++..- .++..+.+. ......+...|+++.|...|-+..
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-------- 733 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-------- 733 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------
Confidence 3344444443333210 011111111 112233344555555555443321
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 251 (410)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (410)
.....+.+......|.+|+.+++.+...+ .-..-|..+...|...|+++.|+++|.+. ..++-.+..|
T Consensus 734 -~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my 801 (1636)
T KOG3616|consen 734 -CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMY 801 (1636)
T ss_pred -hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHH
Confidence 12233456667788999999998888763 34455777888899999999999888553 2345667789
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 015246 252 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 331 (410)
.+.|+|+.|.++-.+... .......|..-..-+-..|++.+|.+++-.+. .|+ ..+.+|-+.|..+..+
T Consensus 802 ~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmi 870 (1636)
T KOG3616|consen 802 GKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMI 870 (1636)
T ss_pred hccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHH
Confidence 999999999888776643 23345556555666777888888877764332 243 3467888888888888
Q ss_pred HHHHhhccC-CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHH
Q 015246 332 NVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 332 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 399 (410)
++.++.... -..+...+..-+-..|+..+|...|-++- -|..-+..|..++-|++|.++
T Consensus 871 rlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 871 RLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 888766554 33445555666666777777776665542 123334444444445544443
No 101
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=1.1e-07 Score=83.17 Aligned_cols=219 Identities=14% Similarity=0.035 Sum_probs=169.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 133 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 212 (410)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (410)
+|--..-..+...+...|-...|..+++++. .|...+.+|...|+..+|..+..+..++ +||+..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3333344567788888899999999998664 4667888999999999999998888874 7888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCh
Q 015246 213 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 292 (410)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (410)
........-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +....+|..+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88877777788888888776443 11222223345788999999998877764 34667888888888889999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
+.|.+.|...... -+.+...|+.+-.+|.+.|+-.+|...+.+..+- +...|.+.+....+.|.+++|++.+.++.
T Consensus 536 q~av~aF~rcvtL-~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL-EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHHhhc-CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999888774 2445778999999999999999999999988776 66677778888889999999999998887
Q ss_pred Hc
Q 015246 370 KS 371 (410)
Q Consensus 370 ~~ 371 (410)
..
T Consensus 615 ~~ 616 (777)
T KOG1128|consen 615 DL 616 (777)
T ss_pred Hh
Confidence 43
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=2.6e-06 Score=76.06 Aligned_cols=345 Identities=13% Similarity=0.098 Sum_probs=179.6
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-C--------CCCChHhHHHHHHHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM-G--------IPPDVWSYNSLMHCL 76 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~l~~~~ 76 (410)
|...|+.+.|.+-.+.++ +...|..+.+.|.+..+++-|.-.+-.|... | -.|+ ..=..+.-..
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 455677777776666554 3456777777777777777665555554321 0 0111 1222223334
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 015246 77 FQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTAR 156 (410)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 156 (410)
...|.+++|..+|.+-.. |..|=..|-..|.+++|.++-+.-.+.. =..||......+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHH
Confidence 456677777777766543 2234445556677777776655432221 2245555555566666777777
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 015246 157 WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236 (410)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (410)
+.|++... |--..+..|. .++.......+. ..|...|......+...|+.+.|+.+|.....
T Consensus 879 eyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~------~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 879 EYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRR------KRDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHhcCC----hHHHHHHHHH------hChHHHHHHHHh------ccchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 77765422 1111111111 112222222222 23445566666667778888888888876654
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCCHH
Q 015246 237 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG----FDSNLE 312 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~ 312 (410)
|-.+++..|-.|+.++|-++-++- -|...-..+.+.|...|++.+|..+|.+..... +.....
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566667778888887765542 244555667788888888888888877654310 000000
Q ss_pred HHHHHHHHHH--ccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHH--------HHHHcCCC--CcHhhH
Q 015246 313 AYNCIVDRLG--KDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLL--------SCLKSGVR--ILKSAQ 380 (410)
Q Consensus 313 ~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~--~~~~~~ 380 (410)
.-..|...+. ...+.-.|.+.|++.... ....+..|-+.|.+.+|+++.- +++..++. .|+...
T Consensus 1008 ~~d~L~nlal~s~~~d~v~aArYyEe~g~~----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1008 MKDRLANLALMSGGSDLVSAARYYEELGGY----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHcchh----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 1111222211 122333344444443211 1122334555666665554421 12222222 355666
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 381 KAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 381 ~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
+.-...++...++++|..++-..+
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 666666666777777776665443
No 103
>PLN02789 farnesyltranstransferase
Probab=99.05 E-value=8.5e-07 Score=73.51 Aligned_cols=124 Identities=7% Similarity=-0.008 Sum_probs=56.2
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc-chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH-
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL- 222 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 222 (410)
.+...+..++|+.+..+++.... -+..+|+.-..++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 33444555555555555554321 12333333333333444 3455555555555443 33333444333333334432
Q ss_pred -HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015246 223 -KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 223 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (410)
+++..+++++.+.... +..+|+....++...|+++++++.+.++.+.+
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 3444455455444222 44445444444555555555555555555443
No 104
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.05 E-value=6.7e-06 Score=69.95 Aligned_cols=374 Identities=11% Similarity=0.077 Sum_probs=225.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 015246 28 SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM 107 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (410)
+-|..+|..||+-+-.+ .++++.+.++++... .+-....|..-+..-.+.++++...++|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 67899999999987666 999999999999875 4556788999999999999999999999998866 4456677766
Q ss_pred HHHHhh-cCchHH----HHHHHHHHH-hCCCCC-CHHHHHHHHHH---------HHhcCCHHHHHHHHHHHhhCCCCC--
Q 015246 108 LNGLCK-NRYTDN----ALRMFRGLQ-KHGFVP-ELVTYNILIKG---------LCKAGRLRTARWILKELGDSGHAP-- 169 (410)
Q Consensus 108 ~~~~~~-~~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~-- 169 (410)
+.--.+ .++... ..+.|+-.. +.|+.+ +...|+..+.. +....+++...++++++.......
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 654333 233222 223333333 334332 22344444433 334456777788888876532211
Q ss_pred ----cHHHHHHHHHH-------HHhccchhHHHHHHHHHHHc--CCCCChhh---------------HHHHHHH------
Q 015246 170 ----NAITYTTIMKC-------CFRNRKYKLGLEILSAMKRK--GYTFDGFG---------------YCTVIAA------ 215 (410)
Q Consensus 170 ----~~~~~~~l~~~-------~~~~~~~~~a~~~~~~~~~~--~~~~~~~~---------------~~~l~~~------ 215 (410)
|-..|..-++. --+...+..|.++++++... |......+ |..+|..
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 11222211111 12234455666666655432 21110000 1111111
Q ss_pred -------------------------------------------HHHcCC-------HHHHHHHHHHHHHcCCCCChhhHH
Q 015246 216 -------------------------------------------FVKIGR-------LKEATDYMEQMVTDGVQLDIVSYN 245 (410)
Q Consensus 216 -------------------------------------------~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 245 (410)
+...|+ .+++..+++...+.-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 223333333332221111111222
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q 015246 246 TLINLYCKE---GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAYNCIVDRL 321 (410)
Q Consensus 246 ~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 321 (410)
.+...--.. +..+.....++++...-..--.-+|..++..-.+...+..|..+|.++.+.+..+ ...+..+++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 221111011 1244445555555443222223467777888888888999999999999877666 555556666554
Q ss_pred HccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc--HhhHHHHHHHHhhcCCHHHH
Q 015246 322 GKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREA 396 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a 396 (410)
..++...|.++|+.-... ++..-...+..+...++-..|..+|++.+..+++|+ ...|..++..-..-|+...+
T Consensus 413 -cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 413 -CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 467889999999987766 555566778888899999999999999998866665 47899999988999999999
Q ss_pred HHHHHHHHHc
Q 015246 397 KKIQSKIRMA 406 (410)
Q Consensus 397 ~~~~~~~~~~ 406 (410)
.++-++....
T Consensus 492 ~~lekR~~~a 501 (656)
T KOG1914|consen 492 LKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHh
Confidence 8887776543
No 105
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=1.4e-06 Score=72.23 Aligned_cols=214 Identities=11% Similarity=0.032 Sum_probs=130.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG-KPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
+..+-..+...++.++|+.+++++.+.... +..+|+....++...| ++++++..++++.+.+ +.+..+|+.....+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 344444555667788888888888775322 3445555555566666 5678888888877765 556666776655555
Q ss_pred hcCch--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc---cch
Q 015246 113 KNRYT--DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN---RKY 187 (410)
Q Consensus 113 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~ 187 (410)
+.|.. ++++.+++++.+...+ |..+|+....++...|+++++++.++++++.++. +...|+....++.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccc
Confidence 55542 5677777777766433 6777777777777778888888888888776543 455565555444433 222
Q ss_pred ----hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015246 188 ----KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI----GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 253 (410)
Q Consensus 188 ----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (410)
+..++...+++... |-+...|+.+...+... +...+|.+.+.+....+ +.+......++..|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 34555565665554 55566666666666552 23345666666655432 2244555555555553
No 106
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.00 E-value=2.2e-07 Score=87.00 Aligned_cols=244 Identities=14% Similarity=0.086 Sum_probs=185.4
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHHcCCHHHHHHHH
Q 015246 154 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFD---GFGYCTVIAAFVKIGRLKEATDYM 229 (410)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~ 229 (410)
.|.++-+.++. .+.+...|-..+......++.++|.++.++++.. ++.-. ...|.++++.-...|.-+...++|
T Consensus 1443 saeDferlvrs--sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRS--SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhc--CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 44444444433 2345677888888889999999999999998865 22222 235666666666778888999999
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 015246 230 EQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 309 (410)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 309 (410)
+++.+. -.....|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+. -|
T Consensus 1521 eRAcqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lP 1595 (1710)
T KOG1070|consen 1521 ERACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LP 1595 (1710)
T ss_pred HHHHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cc
Confidence 999875 223567888899999999999999999999876 2346778999999999999999999999998875 33
Q ss_pred C---HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH--hhHH
Q 015246 310 N---LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK--SAQK 381 (410)
Q Consensus 310 ~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~ 381 (410)
. .......+..-.+.|+.+.++.+|+..... ....|+.+++.-.++|+.+.+..+|++.+..+++|-. ..|.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 3 445556667778899999999999987765 5678999999999999999999999999998888753 4555
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHH
Q 015246 382 AVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 382 ~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
.++..--..|+-..+..+=.++.
T Consensus 1676 kwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHHHHHhcCchhhHHHHHHHHH
Confidence 66665566777766665544443
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.8e-05 Score=72.46 Aligned_cols=316 Identities=12% Similarity=0.090 Sum_probs=152.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI--PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM 107 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (410)
|+......+.++...+-..+-+++++++.-.+. .-+...-+.|+-... .-+..+..+..+++..-+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC-chh------H
Confidence 455556667777777777777777777764321 111122222332222 334555666666655433 222 2
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
...+...+-+++|..+|++... +....+.|+. ..+..+.|.+.-++.. .+..|+.+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 2334445556666666655432 2333333332 1233444444333321 234455555555555555
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
.+|++-|-+ ..|+..|..++....+.|.+++..+.+.-..+....|... ..++-+|++.++..+..+.+
T Consensus 1121 ~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 555544432 2244555666666666666666666555555443333332 44555566555554443332
Q ss_pred HhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------------------CCCCCHHHHHHHHHHHHccCCh
Q 015246 268 EKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI--------------------GFDSNLEAYNCIVDRLGKDGKI 327 (410)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~g~~ 327 (410)
..|+......+..-|...+.++.|.-++..+... ....+..+|..+-.+|...+.+
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhh
Confidence 1344444444555555555555544444322110 0011233444444444444333
Q ss_pred HHHHHHHHhhccC----CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-cHhhHHHHHHHHhh
Q 015246 328 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI-LKSAQKAVVDGLRH 389 (410)
Q Consensus 328 ~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 389 (410)
.-|. +-.. ...-...++..|-..|-+++-+.+++..+ |+.. ....|..+.-.|.+
T Consensus 1266 rlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1266 RLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred hHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh
Confidence 3321 1111 33345566777777777777777777766 3332 33445555554543
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.97 E-value=1.2e-06 Score=82.24 Aligned_cols=201 Identities=11% Similarity=0.031 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCC---CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHH
Q 015246 136 LVTYNILIKGLCKAGRLRTARWILKELGDS-GHA---PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCT 211 (410)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 211 (410)
...|-..|......++.++|.++.+++... ++. --...|.++++.-.-.|.-+...++|+++.+.. .....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence 334444444445555555555555544331 000 012234444444444444444555555544431 12234444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcC
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILIDGLCKAG 290 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 290 (410)
|...|.+.+..++|.++++.|.+. .......|...+..+.+.++-+.|..++.+..+.-.. -........++.-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 555555555555555555555544 2234445555555555555555555555555433110 01222233333344455
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
+.+.+..+|+..... .+.-...|+.++++-.+.|+.+.++.+|+++...
T Consensus 1615 DaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred CchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 555555555555443 2223445555555555555555555555555443
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.6e-05 Score=72.74 Aligned_cols=114 Identities=14% Similarity=0.190 Sum_probs=52.7
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG 145 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (410)
+..|..+..+-.+.|...+|.+-|-+ ..|+..|.-.+....+.|.+++-.+.+....+..-.|... ..|+-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 33455555555555555555544422 2233445555555555555555555555554443333322 244455
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHH
Q 015246 146 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEIL 194 (410)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (410)
|++.++..+..+++. -|+......+..-|...+.++.|.-+|
T Consensus 1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 555555444433331 134444444444444444444444333
No 110
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=2.8e-06 Score=74.98 Aligned_cols=167 Identities=14% Similarity=0.178 Sum_probs=90.9
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
+.+.....+|.+|+.+++.++... .-...|..+...|...|+++.|.++|-+.- .++-.+..|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344455667777777777776652 233456666677777777777777775431 244456677777777
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
+.|.++-.+.... ......|..-..-+-.+|++.+|++++-.+.. |+ ..+..|-+.|..+..+++..+.
T Consensus 808 ~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHh
Confidence 7777666554422 23334444445555566666666665533311 22 2344555666666555555443
Q ss_pred HhCCCCCchHHHHHHHHHHHhcCChhHHHHHH
Q 015246 268 EKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299 (410)
Q Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (410)
... .-..|...+..-+...|+...|...|
T Consensus 877 h~d---~l~dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 877 HGD---HLHDTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred Chh---hhhHHHHHHHHHHHhccChhHHHHHH
Confidence 211 11234444444455555555554443
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.94 E-value=7e-07 Score=71.84 Aligned_cols=184 Identities=11% Similarity=-0.008 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch--HHHHHH
Q 015246 208 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI---VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YTHTIL 282 (410)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l 282 (410)
.+..+...+...|++++|...++++...... +. ..+..+..++...|++++|...++++.+....... ..+..+
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~ 113 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLR 113 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHH
Confidence 3344444455555555555555555443111 11 23344445555555555555555555543211010 123333
Q ss_pred HHHHHhc--------CChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHH
Q 015246 283 IDGLCKA--------GNIKGARLHLEYMNKIGFDSNL-EAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLC 353 (410)
Q Consensus 283 ~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 353 (410)
..++... |+++.|.+.++.+.+. .|+. ..+..+..... ..... ......+...+.
T Consensus 114 g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~----------~~~~~~~a~~~~ 177 (235)
T TIGR03302 114 GLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL----------AGKELYVARFYL 177 (235)
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH----------HHHHHHHHHHHH
Confidence 3333322 5677777777777664 2332 22211111100 00000 011234566788
Q ss_pred hcCChhhHHHHHHHHHHcCC--CCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 354 KAKRLPSASKLLLSCLKSGV--RILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
..|++.+|+..++++++... +.....+..++.++.+.|++++|..+++.+....+
T Consensus 178 ~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 178 KRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88999999999999886521 22356788888999999999999999888876654
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.93 E-value=2.8e-07 Score=71.05 Aligned_cols=153 Identities=9% Similarity=0.073 Sum_probs=116.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCh
Q 015246 213 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNI 292 (410)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 292 (410)
+..|...|+++.+....+.+.. |. . .+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 4567888998887555432221 11 0 1223667788888888887765 45788899999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCC--hHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHH
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRL-GKDGK--IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 366 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 366 (410)
++|...+++..+.. +.+...+..+..++ ...|+ .++|.+++++.... ++.++..+...+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999864 44677888888764 67777 58999999988776 67788889999999999999999999
Q ss_pred HHHHcCCCCcHhhH
Q 015246 367 SCLKSGVRILKSAQ 380 (410)
Q Consensus 367 ~~~~~~~~~~~~~~ 380 (410)
++++.. +|+..-.
T Consensus 169 ~aL~l~-~~~~~r~ 181 (198)
T PRK10370 169 KVLDLN-SPRVNRT 181 (198)
T ss_pred HHHhhC-CCCccHH
Confidence 999875 5555443
No 113
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.93 E-value=2.8e-06 Score=77.33 Aligned_cols=380 Identities=12% Similarity=-0.002 Sum_probs=213.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHH
Q 015246 12 FDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQD 91 (410)
Q Consensus 12 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 91 (410)
...|+..|-+..+.. +.=...|..|...|....+..+|.+.|+...+.+. .+..........|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 555666665555543 12245788888888888888889999988877543 2566778888889999999999888443
Q ss_pred HhcCC-CCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc
Q 015246 92 MICGD-LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 170 (410)
Q Consensus 92 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (410)
.-+.. ...-...|....-.|...++...|..-|+...+..+. |...|..+..+|...|.+..|.++|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 33221 0111223444555677788888899888888876443 7788888999999999999999999887763 333
Q ss_pred HHHHHH--HHHHHHhccchhHHHHHHHHHHHcC------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-------Hc
Q 015246 171 AITYTT--IMKCCFRNRKYKLGLEILSAMKRKG------YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV-------TD 235 (410)
Q Consensus 171 ~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~ 235 (410)
. +|.. ....-+..|.+.++...+....... ...-..++-.+...+...|=..++..++++.+ ..
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 2 2222 2234456788888888888776441 01111222222222222332223333332222 21
Q ss_pred CCCCChhhHHHHHHHHH-----------------------hcCCH---H---HHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 015246 236 GVQLDIVSYNTLINLYC-----------------------KEGKL---E---AAYLLLDEMEKQGFECDKYTHTILIDGL 286 (410)
Q Consensus 236 ~~~~~~~~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (410)
....+...|-.+-.++. ..+.. + -+.+.+-.-.. ...+..+|..++..|
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY 785 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence 11112222222111110 11110 0 01111111111 112233344444333
Q ss_pred Hh----c----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhc
Q 015246 287 CK----A----GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA 355 (410)
Q Consensus 287 ~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 355 (410)
.+ . .+...|...+.+.++. ...+..+|+.|.-. ...|.+.-|.-.|-..... ...+|..+...+.++
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 32 1 1223556666666554 23345555555444 5556777776666554433 556677777777888
Q ss_pred CChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 356 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 356 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
.+++-|...|...+... |.+...|..........|+.-++..+|..
T Consensus 864 ~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 88888888888877553 44555555554455667777777777654
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=7.2e-07 Score=78.28 Aligned_cols=220 Identities=15% Similarity=0.076 Sum_probs=171.4
Q ss_pred CCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 168 APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
+|-...-..+...+...|-...|..+++++. .+...+.+|...|+..+|..+..+..+ -+|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3444444556677778888888888888765 345677888888988899888888777 46788888877
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 015246 248 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 327 (410)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (410)
........-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 77776666677888777665432 12222333345789999999999877753 45677899999999999999
Q ss_pred HHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 328 DHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 328 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
+.|.+.|...... +...|+++..+|.+.++-.+|...++++.+.+ ..+...|...+-.....|.+++|.+.+.++.
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 9999999987765 77899999999999999999999999999887 5667788888888899999999999998886
Q ss_pred Hcc
Q 015246 405 MAK 407 (410)
Q Consensus 405 ~~~ 407 (410)
..+
T Consensus 615 ~~~ 617 (777)
T KOG1128|consen 615 DLR 617 (777)
T ss_pred Hhh
Confidence 543
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.91 E-value=2.3e-06 Score=79.35 Aligned_cols=236 Identities=8% Similarity=0.030 Sum_probs=146.6
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
+...+..|+..+...+++++|.++.+...+.. +-....|..+...+.+.++.+.+..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 45667777777778888888888887666553 33334444444455555554444433 2223
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHH
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKE 224 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (410)
......++..+..+...+... .-+...+..+..+|-+.|+.+++..+++++.+.. +.+..+.+.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 333333443344444444442 2244466777788888888888888888888877 66777888888888877 8888
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 225 ATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
|..++.+.... +...+++..+.++|.++..... .+...+..+.+.....-
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-~d~d~f~~i~~ki~~~~-------------- 217 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-DDFDFFLRIERKVLGHR-------------- 217 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-ccchHHHHHHHHHHhhh--------------
Confidence 88887777653 5666678888888888877632 13333333332222111
Q ss_pred cCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHH
Q 015246 305 IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 353 (410)
Q Consensus 305 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 353 (410)
+..--..++..+...|...++++++..++..+.+. |......++.+|.
T Consensus 218 -~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 -EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred -ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 12223345556667777888888888888888766 4555666666665
No 116
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=7.7e-06 Score=63.21 Aligned_cols=250 Identities=14% Similarity=0.064 Sum_probs=150.3
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
++-+...|++..++..-+...... .+...-..+.++|...|.+....+- +.... .|.......+.......+..
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchh
Confidence 455666777777776665554432 3444455566777777766544332 22222 34444444444444444444
Q ss_pred HHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHH
Q 015246 118 DNALR-MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 196 (410)
Q Consensus 118 ~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (410)
++-+. +.+.+.......+......-...|+..|++++|.+.+.... +......=..++.+..+.+.|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 33344433333233333344566788888888888876521 333333334566677788888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 015246 197 MKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 272 (410)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (410)
|.+-. +..+.+.+..++.+ .+.+.+|.-+|+++.+. .+|++.+.+-...++...|++++|..+++.......
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 88643 45566666666654 34677888888888765 667888888888888888888888888888877653
Q ss_pred CCchHHHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 015246 273 ECDKYTHTILIDGLCKAGNI-KGARLHLEYMNK 304 (410)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 304 (410)
. ++.+...++.+-...|.. +...+.+..+..
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3 566665555555555544 334555555554
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.90 E-value=8.8e-07 Score=68.21 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=105.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
..+-..+...|+-+....+....... .+.+.......+....+.|++..|...+++..... ++|...++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 55556666667777666666665443 23345555566777777777777777777776654 55677777777777777
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 366 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 366 (410)
|+++.|..-|.+..+. ..-++...+.+...+.-.|+++.|..++...... +..+-..+.......|++++|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALEL-APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777777777765 2334556666777777777777777777766544 66666777777777777777777665
Q ss_pred HHH
Q 015246 367 SCL 369 (410)
Q Consensus 367 ~~~ 369 (410)
.-+
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 543
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=1e-06 Score=70.85 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=38.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 246 TLINLYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
.+...+...|++++|...+....+... +.....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344556777777777777777765521 112456667777777777777777777666553
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.89 E-value=6.3e-07 Score=68.98 Aligned_cols=160 Identities=12% Similarity=0.033 Sum_probs=106.8
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 015246 175 TTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 254 (410)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (410)
..+...+...|+-+....+........ +.|.......+....+.|++..|...+.+.... -++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 445556666677666666666544332 445555556677777777777777777777765 455777777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 015246 255 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVF 334 (410)
Q Consensus 255 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (410)
|+++.|..-|.+..+.. .-++...+.+.-.+.-.|+++.|..++......+ .-+..+-..+..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777777777653 2245566677777777777777777777776643 335556666677777777777777765
Q ss_pred Hhhc
Q 015246 335 ESME 338 (410)
Q Consensus 335 ~~~~ 338 (410)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5433
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=6e-06 Score=63.78 Aligned_cols=251 Identities=14% Similarity=0.092 Sum_probs=167.6
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
|+-+.-.|.+..++..-...... +.+...--.+.++|...|.+.....- +.... .|....+..+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchh
Confidence 34556678888777766655543 24445555567788888776544332 22221 23444444444444444444
Q ss_pred hHHH-HHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 83 DEAN-RVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 83 ~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (410)
+.-. ++.+.+.......+......-...|++.+++++|++.+.... +......=...+.+..+++-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 444555544434444444455667899999999999988722 334444445667788899999999999
Q ss_pred HhhCCCCCcHHHHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 015246 162 LGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 237 (410)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 237 (410)
|.+. .+..|.+.|..++.+ .+.+..|.-+|++|-++- +|+..+.+....++...|++++|..+++.......
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9884 356677767766654 456889999999998764 88999999999999999999999999999998754
Q ss_pred CCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhC
Q 015246 238 QLDIVSYNTLINLYCKEGKL-EAAYLLLDEMEKQ 270 (410)
Q Consensus 238 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 270 (410)
. ++.+...++.+-...|.. +...+.+.++...
T Consensus 239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 4 667766666666666655 4445566666654
No 121
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.88 E-value=4.2e-06 Score=76.24 Aligned_cols=395 Identities=11% Similarity=-0.020 Sum_probs=248.0
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCChh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI-PPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 83 (410)
.|+...+...|.+.|....+.+ ..+..........|+...+++.|..+.-..-+... ..-...|....-.|...++..
T Consensus 501 iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h 579 (1238)
T KOG1127|consen 501 IYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLH 579 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchh
Confidence 3444557788999999998876 56788899999999999999999998433333210 011223344555677889999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV-TYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
.+...|+...... |.|...|..+..+|...|.+..|.++|.+.... .|+.. .-.-..-.-+..|.+.++...+..+
T Consensus 580 ~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~i 656 (1238)
T KOG1127|consen 580 GAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLI 656 (1238)
T ss_pred hHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999998776 778899999999999999999999999998875 33322 2222334457789999999988877
Q ss_pred hhC------CCCCcHHHHHHHHHHHHhccchhHHHHHHHHH-------HHcCCCCChhhHHHHHHHHHHcCCHH------
Q 015246 163 GDS------GHAPNAITYTTIMKCCFRNRKYKLGLEILSAM-------KRKGYTFDGFGYCTVIAAFVKIGRLK------ 223 (410)
Q Consensus 163 ~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~------ 223 (410)
... +...-..++-.+...+.-.|-..++..+++.. .......+...|..+..+|.-.-..+
T Consensus 657 i~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~ 736 (1238)
T KOG1127|consen 657 IYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNM 736 (1238)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHH
Confidence 542 11112333333333333344434444443332 22221122222222222211100000
Q ss_pred HHHHHH-HHHHHcC--------------------CCCChhhHHHHHHHHHh----cC----CHHHHHHHHHHHHhCCCCC
Q 015246 224 EATDYM-EQMVTDG--------------------VQLDIVSYNTLINLYCK----EG----KLEAAYLLLDEMEKQGFEC 274 (410)
Q Consensus 224 ~a~~~~-~~~~~~~--------------------~~~~~~~~~~l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~ 274 (410)
....++ .+....+ ...+..+|..++..|.+ .+ +...|...+...++.. ..
T Consensus 737 h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-an 815 (1238)
T KOG1127|consen 737 HYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-AN 815 (1238)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hc
Confidence 001111 1111111 11234445555544433 11 2346777777776653 23
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 351 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 351 (410)
+..+|+.+.-. ...|++.-+...|-+-... .+....+|..+...+....+++.|...|...+.. +...|......
T Consensus 816 n~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali 893 (1238)
T KOG1127|consen 816 NEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALI 893 (1238)
T ss_pred cHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHh
Confidence 55666666554 6668888888888776654 3456678888888899999999999999988776 44556555555
Q ss_pred HHhcCChhhHHHHHHHHH----HcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 352 LCKAKRLPSASKLLLSCL----KSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
.-..|+.-++..+|..-- ..|--|+...|..........|+.++-+...+++-.+
T Consensus 894 ~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 894 PEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred HHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 667888888888887622 3355667777777777778889988887777766443
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.85 E-value=1.1e-07 Score=69.40 Aligned_cols=121 Identities=10% Similarity=-0.051 Sum_probs=93.7
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 261 YLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
..++++..+. .|+ .+......+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+.....
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3456666654 333 35567778889999999999999988863 557788888999999999999999999988765
Q ss_pred ---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 015246 341 ---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 387 (410)
Q Consensus 341 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (410)
++..+..+..++...|++++|+..|++.++.. +.+...+.....++
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 77788889999999999999999999998763 44555554444443
No 123
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.85 E-value=3.8e-07 Score=70.34 Aligned_cols=157 Identities=11% Similarity=0.084 Sum_probs=119.4
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+-.|...|+++.+....+.+.. |. ..+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3468888998887554432221 11 12223667788888888887764 34788999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHH-hhcCc--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGL-CKNRY--TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 159 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (410)
+.|...|++..... +.+...+..+..++ ...|+ .++|.+++++..+.+.. +...+..+...+...|++++|...|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998876 66788888888764 66676 59999999999987544 7888899999999999999999999
Q ss_pred HHHhhCCCCCcHHHHH
Q 015246 160 KELGDSGHAPNAITYT 175 (410)
Q Consensus 160 ~~~~~~~~~~~~~~~~ 175 (410)
+++.+... |+..-+.
T Consensus 168 ~~aL~l~~-~~~~r~~ 182 (198)
T PRK10370 168 QKVLDLNS-PRVNRTQ 182 (198)
T ss_pred HHHHhhCC-CCccHHH
Confidence 99988643 4444343
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=5.7e-07 Score=65.57 Aligned_cols=108 Identities=14% Similarity=-0.016 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
.++++..+. ++..+......+...|++++|...|+...... +.+...+..+..++...|++++|...|++..+..
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555553 23334556667777778888888877777664 3366677777777777888888888888777753
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
+.+...+..+..++...|++++|...|+.....
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446677777777777778888888777776654
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.80 E-value=1.3e-05 Score=74.62 Aligned_cols=238 Identities=9% Similarity=0.032 Sum_probs=166.3
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM 107 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (410)
.+...+..|+..+...+++++|.++.+...+. .|+ ...|..+...+...++.+.+.-+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 45668899999999999999999999977764 343 34444444466666665554443 33
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
+.......++.-+..+...+... .-+...+..+..+|-+.|+.+++..+++++.+.. +-|+.+.+.+...+... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 44444445554444445555553 2355688889999999999999999999999876 45788899999999888 99
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
++|.+++.+.... +...+++..+..+|.++....+. +...+. .+.+.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHH
Confidence 9999998887754 66677899999999999886222 332322 233333
Q ss_pred HhC-CCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015246 268 EKQ-GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 322 (410)
Q Consensus 268 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (410)
... +..--..++..+...|...++++++..+++.+.+.. +.|......++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 222 112233456667777888899999999999999874 345566666777665
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.78 E-value=3.5e-06 Score=77.19 Aligned_cols=143 Identities=11% Similarity=0.055 Sum_probs=99.4
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 015246 237 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 316 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 316 (410)
.+.+...+..|.....+.|.+++|..+++.+.+.. +-+......++..+.+.+++++|....++..... +.+......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 44457777777777778888888888888777763 2234556666777777888888888888777753 344566666
Q ss_pred HHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHH
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 382 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 382 (410)
+..++...|++++|..+|+++... +..++..+..++...|+.++|...|+++++.. .|....|+.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 777777788888888888877754 45677777777777888888888888777652 444444433
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=2.4e-05 Score=60.14 Aligned_cols=186 Identities=18% Similarity=0.169 Sum_probs=114.2
Q ss_pred chHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHH
Q 015246 116 YTDNALRMFRGLQK---HG-FVPELV-TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLG 190 (410)
Q Consensus 116 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 190 (410)
+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+...- +.+...-..-...+...|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 44455555554432 12 333333 23445556666777777777777766542 22222222222334456777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 191 LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
+++++.+.+.+ |.|..++..-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 77777777775 556666666666666677777777777777765 5567788888888888888888888888887755
Q ss_pred CCCCchHHHHHHHHHHHhcC---ChhHHHHHHHHHHhc
Q 015246 271 GFECDKYTHTILIDGLCKAG---NIKGARLHLEYMNKI 305 (410)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 305 (410)
. +.++..+..+...+.-.| +.+.+.++|.+..+.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 3 334555555555544333 456677777777764
No 128
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=1.4e-08 Score=52.65 Aligned_cols=32 Identities=47% Similarity=0.795 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 26 GISPDVVTYNSLIAGATRNSLLSCSLDLLDEM 57 (410)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 57 (410)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=5.9e-06 Score=75.76 Aligned_cols=147 Identities=13% Similarity=0.028 Sum_probs=111.1
Q ss_pred CCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHH
Q 015246 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNI 141 (410)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (410)
.+.+...+..|.......|.+++|..+++.+.+.. +.+......+...+.+.+.+++|+..+++....... +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 44567778888888888888888888888888765 555677777888888888888888888888876433 6667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 142 LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV 212 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 212 (410)
+..++.+.|++++|..+|+++... .+-+..++..+..++...|+.++|...|+...+.. .+....|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 778888888888888888888873 23357777888888888888888888888887764 3444444443
No 130
>PF12854 PPR_1: PPR repeat
Probab=98.73 E-value=2.2e-08 Score=51.89 Aligned_cols=32 Identities=50% Similarity=0.879 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 131 GFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
|+.||..+|++++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=5e-05 Score=64.12 Aligned_cols=140 Identities=19% Similarity=0.160 Sum_probs=75.5
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc-HHHHHHHHHHHHhccch
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN-AITYTTIMKCCFRNRKY 187 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 187 (410)
..+...|++++|+..++.+... .+-|+.........+.+.++.++|.+.++++... .|+ ......+..++.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 3444556666666666665554 2334444445555566666666666666666553 233 34444455566666666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
.+|+.+++...... +.|+..|..+..+|...|+..++..... ..+...|+++.|...+...
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHH
Confidence 66666666555543 5555566666666666665555543322 2234455555565555555
Q ss_pred HhC
Q 015246 268 EKQ 270 (410)
Q Consensus 268 ~~~ 270 (410)
.+.
T Consensus 452 ~~~ 454 (484)
T COG4783 452 SQQ 454 (484)
T ss_pred HHh
Confidence 444
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=3.3e-05 Score=59.38 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=55.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcC
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNR 115 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (410)
.++-+....|+.+.|...++.+... +|-+..+-..-.-.+-..|++++|.++++.+++.+ |.|..++..-+...-..|
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 3333444445555555555554443 22222222211222233445555555555555444 334444443333444444
Q ss_pred chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015246 116 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (410)
..-+|++-+....+. +..|...|..+...|...|++++|.-.++++.-
T Consensus 135 K~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 135 KNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred CcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 444444444444443 333445555555555555555555555554443
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.67 E-value=2.8e-05 Score=65.55 Aligned_cols=148 Identities=13% Similarity=0.056 Sum_probs=112.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHhcCCh
Q 015246 214 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD-KYTHTILIDGLCKAGNI 292 (410)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 292 (410)
..+...|++++|+..++.+... .+.|+..+......+...++..+|.+.++.+... .|+ ......+..++.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 3455678888899988888876 3445666666777888899999999999988877 444 55566677888889999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
.+|..+++..... .+.|+..|..|..+|...|+..++.... ...+...|+++.|...+....+..
T Consensus 391 ~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 391 QEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 9999888888776 4667888999999999998888776644 456777889999998888887653
Q ss_pred CCCcHhhH
Q 015246 373 VRILKSAQ 380 (410)
Q Consensus 373 ~~~~~~~~ 380 (410)
.++..+|
T Consensus 456 -~~~~~~~ 462 (484)
T COG4783 456 -KLGFPDW 462 (484)
T ss_pred -cCCcHHH
Confidence 4444444
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.66 E-value=7.6e-07 Score=64.65 Aligned_cols=113 Identities=13% Similarity=0.005 Sum_probs=79.6
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 340 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 340 (410)
.++++..... .+......+...+...|++++|...++.+...+ +.+...+..+...+...|++++|...++.....
T Consensus 5 ~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDS-EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCCh-hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4555555431 134455666677778888888888888887753 446677777888888888888888888877554
Q ss_pred -CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhh
Q 015246 341 -DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 379 (410)
Q Consensus 341 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 379 (410)
++..+..+..++...|++++|...+++.++. .|+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 5566777778888888888888888888765 344443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.61 E-value=3.6e-06 Score=61.11 Aligned_cols=97 Identities=13% Similarity=0.062 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 111 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (410)
.....+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...++.....+ +.+...+..+..++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 344445555555666666666666655543 2244555555555656666666666666555443 44455555555555
Q ss_pred hhcCchHHHHHHHHHHHhC
Q 015246 112 CKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~ 130 (410)
...|++++|...|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5666666666666555553
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.56 E-value=0.00059 Score=62.18 Aligned_cols=222 Identities=14% Similarity=0.138 Sum_probs=124.0
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 7 CQFVSFDAGYTILNRMREAGISPDVVTYNSLIA--GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
...+++..|++..+.+.++. |+... ...+. .+.+.|+.++|..+++.....+.. |..|...+-.+|...|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 45678888888888888763 55432 22333 345788889999888887765444 77888888889999999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHH
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR----------LRT 154 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~ 154 (410)
|..+|++..+. -|+......+..+|++.+++.+-.+.=-++.+. .+-++..+=.++........ ..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 99999998866 466777777777888877766544433333332 23344444344443332211 123
Q ss_pred HHHHHHHHhhCC-CCCcHHHHHHHHHHHHhccchhHHHHHHHH-HHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 015246 155 ARWILKELGDSG-HAPNAITYTTIMKCCFRNRKYKLGLEILSA-MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQM 232 (410)
Q Consensus 155 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 232 (410)
|.+.++.+.+.+ .--+..-...........|++++|.+++.. ..+.-.+.+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 344444444332 111111222223334455666666666632 222221222222233344444455555555544444
Q ss_pred HHc
Q 015246 233 VTD 235 (410)
Q Consensus 233 ~~~ 235 (410)
...
T Consensus 253 l~k 255 (932)
T KOG2053|consen 253 LEK 255 (932)
T ss_pred HHh
Confidence 443
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.51 E-value=1.2e-05 Score=58.85 Aligned_cols=22 Identities=18% Similarity=0.151 Sum_probs=10.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhc
Q 015246 284 DGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
..+...|++++|...|+.+...
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~ 77 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALAN 77 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhh
Confidence 3444445555555555554443
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.45 E-value=1.2e-05 Score=68.17 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=57.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015246 71 SLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 150 (410)
Q Consensus 71 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 150 (410)
.|+..+...++++.|.++|+++.+.. |+ ....+++.+...++..+|.+++.+..+. .+.+...+..-.+.+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555554432 22 2223444444445555555555555543 1223444444444555555
Q ss_pred CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 015246 151 RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
+++.|+.+.+++.... +-+..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555555555555432 1233355555555555555555555555443
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.42 E-value=2.2e-05 Score=66.60 Aligned_cols=124 Identities=16% Similarity=0.096 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 015246 209 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 288 (410)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (410)
...++..+...++++.|..+++++.+.. | .....++..+...++..+|.+++++..+.. +.+...+..-...+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555566677777777777777652 2 334446666666677777777777776553 2345555555666777
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 289 AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 289 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
.++++.|..+.+++.+. .+.+..+|..|..+|...|+++.|+..++.++
T Consensus 247 k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777777764 23345577777777777777777777777654
No 140
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.41 E-value=8.8e-06 Score=58.44 Aligned_cols=90 Identities=10% Similarity=-0.110 Sum_probs=47.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 015246 314 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 390 (410)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (410)
...+...+...|++++|.++|+.+... +...|..|..++...|++.+|+..|..+...+ +.|+..+..+..++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 334444445555555555555544333 44445555555555555555555555555443 33455555555555555
Q ss_pred CCHHHHHHHHHHHH
Q 015246 391 GCRREAKKIQSKIR 404 (410)
Q Consensus 391 g~~~~a~~~~~~~~ 404 (410)
|+.+.|++.|+...
T Consensus 117 G~~~~A~~aF~~Ai 130 (157)
T PRK15363 117 DNVCYAIKALKAVV 130 (157)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555443
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=3.7e-05 Score=56.35 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 015246 249 NLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 326 (410)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (410)
..+...|++++|...|+.+......|+ ......+...+...|++++|+..++..... ...+..+......+.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 334444444444444444444321111 112222334444444444444444332221 1222333444444455555
Q ss_pred hHHHHHHHH
Q 015246 327 IDHAINVFE 335 (410)
Q Consensus 327 ~~~A~~~~~ 335 (410)
+++|...|+
T Consensus 134 ~~~A~~~y~ 142 (145)
T PF09976_consen 134 YDEARAAYQ 142 (145)
T ss_pred HHHHHHHHH
Confidence 555554444
No 142
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.31 E-value=1.5e-05 Score=56.35 Aligned_cols=94 Identities=16% Similarity=-0.004 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHhhccC------CchhHHHHH
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIGFD--SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMV 349 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~ 349 (410)
++...+..+...|++++|...++.+.+.... .....+..+..++.+.|+++.|...++.+... ...++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4555666667777777777777777654211 11334555666777777777777777766543 133456666
Q ss_pred HHHHhcCChhhHHHHHHHHHHc
Q 015246 350 HNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.++...|++++|...++++++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6677777777777777777655
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.25 E-value=1.5e-05 Score=53.67 Aligned_cols=93 Identities=15% Similarity=-0.001 Sum_probs=56.5
Q ss_pred HHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC
Q 015246 315 NCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 391 (410)
Q Consensus 315 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (410)
..+...+...|++++|...+++.... +...+..+..++...|++++|.+.+++..... +.+...+..+...+...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444555556666666666655443 22445556666666677777777777766543 334456666666777777
Q ss_pred CHHHHHHHHHHHHHccC
Q 015246 392 CRREAKKIQSKIRMAKI 408 (410)
Q Consensus 392 ~~~~a~~~~~~~~~~~~ 408 (410)
++++|...+++..+..+
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 77777777776665543
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.25 E-value=0.0037 Score=57.32 Aligned_cols=193 Identities=12% Similarity=0.038 Sum_probs=126.1
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
.+.|.|+.++|..+++.....+. .|..+...+-..|...++.++|..+|++.... .|+......+..+|++.+++.+
T Consensus 52 sl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999998887763 48889999999999999999999999999875 4677778888888888887765
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhhcC----------chHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHH
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCKNR----------YTDNALRMFRGLQKHG-FVPELVTYNILIKGLCKAGRLR 153 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 153 (410)
-.+.--++-+. .+.+...+=++++...... -..-|.+..+.+.+.+ ...+..-.......+...|+++
T Consensus 129 qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ 207 (932)
T KOG2053|consen 129 QQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQ 207 (932)
T ss_pred HHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHH
Confidence 44333333221 1333333333444333211 1233556666666543 2222233333344556778889
Q ss_pred HHHHHHH-HHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC
Q 015246 154 TARWILK-ELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 201 (410)
Q Consensus 154 ~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (410)
+|.+++. ...+.-...+...-+.-+..+...++|.+..++..++...+
T Consensus 208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 9988883 33333333344444556667777788888888888887775
No 145
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.25 E-value=6.6e-06 Score=50.72 Aligned_cols=62 Identities=15% Similarity=-0.009 Sum_probs=51.9
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
+...+...|++++|+..|+++++.. +-+...+..++.++...|++++|...|+++.+..|+|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4667888999999999999999774 5578888889999999999999999999999888875
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.23 E-value=0.00057 Score=54.70 Aligned_cols=177 Identities=14% Similarity=0.075 Sum_probs=100.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh-
Q 015246 213 IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY---NTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK- 288 (410)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 288 (410)
...+...|++++|.+.|+.+....+. +.... -.++.++.+.+++++|...+++..+..+.....-+.....+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445567777777777777664222 12221 33445666777777777777777655322222222222222221
Q ss_pred -c---------------CC---hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHH
Q 015246 289 -A---------------GN---IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMV 349 (410)
Q Consensus 289 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 349 (410)
. .+ ...|...|+.+++. -|+. .-..+|...+..+...-...-..+.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~la~~e~~ia 182 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDRLAKYELSVA 182 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 22444555555553 2332 2234444444444433222223556
Q ss_pred HHHHhcCChhhHHHHHHHHHHc--CCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 350 HNLCKAKRLPSASKLLLSCLKS--GVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
..|.+.|.+..|+.-++.+++. +.+.....+..+..+|...|..++|.+....+..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 7788899999999999999875 2233456777888899999999999988876654
No 147
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.21 E-value=0.00091 Score=49.17 Aligned_cols=154 Identities=14% Similarity=0.063 Sum_probs=88.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChh
Q 015246 214 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 293 (410)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (410)
.+..+.=|++...+-..+-.+ ..|+...-..+..+..+.|+..+|...|++...--...|......+.++....+++.
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 64 MALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 333444444444333332222 345666666677777777777777777777765545556666777777777777777
Q ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHhhccC--CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 294 GARLHLEYMNKIGFD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 294 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
.|...++++.+.+.. -++.....+...+...|++..|...|+....- ++..-......+.++|+.+++..-+....
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 777777776654210 01223444556666677777777777666554 33333334445566666665554444443
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.21 E-value=5.3e-05 Score=64.73 Aligned_cols=120 Identities=15% Similarity=0.136 Sum_probs=68.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 015246 132 FVPELVTYNILIKGLCKAGRLRTARWILKELGDS--GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209 (410)
Q Consensus 132 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (410)
.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|...|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555556666666666666666666665543 11112233446666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 251 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (410)
+.++..+.+.|++..|.++...|...+...+..++...+.+|
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 666666666666666666666665554444444444444333
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.20 E-value=2.6e-05 Score=66.45 Aligned_cols=100 Identities=12% Similarity=-0.100 Sum_probs=81.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCC
Q 015246 281 ILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKR 357 (410)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 357 (410)
.-...+...|+++.|+..|+++++.. +.+...+..+..+|...|++++|+..++++... +...|..++.++...|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34566778899999999999999863 446778888889999999999999999988766 56688888999999999
Q ss_pred hhhHHHHHHHHHHcCCCCcHhhHHHH
Q 015246 358 LPSASKLLLSCLKSGVRILKSAQKAV 383 (410)
Q Consensus 358 ~~~A~~~~~~~~~~~~~~~~~~~~~l 383 (410)
+++|+..|+++++. .|+......+
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~ 109 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 99999999999976 4443333333
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=3.8e-06 Score=44.28 Aligned_cols=33 Identities=48% Similarity=0.791 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD 65 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 65 (410)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.17 E-value=1e-05 Score=50.57 Aligned_cols=67 Identities=9% Similarity=-0.082 Sum_probs=58.5
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC-CHHHHHHHHHHHHHccC
Q 015246 341 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG-CRREAKKIQSKIRMAKI 408 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 408 (410)
++..|..++..+...|++++|+..|+++++.+ +.+...+..++.++...| ++++|.+.+++..+.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35678888999999999999999999999875 557888999999999999 79999999999988765
No 152
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.16 E-value=3.3e-05 Score=51.44 Aligned_cols=79 Identities=27% Similarity=0.348 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcC--------ChhHHHHHHHHHhcCCCCCChhHHH
Q 015246 35 NSLIAGATRNSLLSCSLDLLDEMLEMGI-PPDVWSYNSLMHCLFQLG--------KPDEANRVFQDMICGDLTPCTATFN 105 (410)
Q Consensus 35 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (410)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455666667888888888888888887 788888888887776542 1234555666666666666666666
Q ss_pred HHHHHHhh
Q 015246 106 IMLNGLCK 113 (410)
Q Consensus 106 ~l~~~~~~ 113 (410)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 66665543
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=4e-06 Score=44.18 Aligned_cols=31 Identities=32% Similarity=0.824 Sum_probs=12.4
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhCCCCC
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVP 134 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 134 (410)
|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3334444444444444444444444333333
No 154
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=4.5e-06 Score=43.60 Aligned_cols=32 Identities=38% Similarity=0.649 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPP 64 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 64 (410)
+|+.++.+|++.|+++.|.++|+.|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 55666666666666666666666666555544
No 155
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.15 E-value=6e-05 Score=64.38 Aligned_cols=123 Identities=15% Similarity=0.213 Sum_probs=77.4
Q ss_pred CCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC--CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHH
Q 015246 62 IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG--DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTY 139 (410)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (410)
.+.+......+++.+....+.+.+..++-+.... ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3345555556666666666666677666666544 11222344456777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc
Q 015246 140 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 184 (410)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (410)
+.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777776666555555555555555555444
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.14 E-value=6.9e-05 Score=61.53 Aligned_cols=128 Identities=18% Similarity=0.103 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK-AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 320 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (410)
.+|..++...-+.+..+.|..+|.++.+.+ ..+...|......-.. .++.+.|..+|+...+. ++.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888999999999998543 3345556655555333 56777799999998876 66778888888888
Q ss_pred HHccCChHHHHHHHHhhccC------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 321 LGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+.+.|+.+.|+.+|++.... ....|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88999999999999988776 2347888888888889999999998888865
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.12 E-value=0.00015 Score=51.15 Aligned_cols=96 Identities=9% Similarity=-0.013 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCC--CCChhHHHHHHHH
Q 015246 35 NSLIAGATRNSLLSCSLDLLDEMLEMGIP--PDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDL--TPCTATFNIMLNG 110 (410)
Q Consensus 35 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 110 (410)
..+...+...|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|.+.|+.+..... +.....+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444555555555555555443211 0122334444555555555555555555443310 0112334444444
Q ss_pred HhhcCchHHHHHHHHHHHhC
Q 015246 111 LCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~ 130 (410)
+...|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
No 158
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.12 E-value=0.00019 Score=58.94 Aligned_cols=130 Identities=11% Similarity=0.048 Sum_probs=59.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH-HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG-LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 146 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (410)
+|..+++...+.+..+.|.++|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34445555555555555555555555332 2223333333333 11234444455555555543 333455555555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCc---HHHHHHHHHHHHhccchhHHHHHHHHHHHc
Q 015246 147 CKAGRLRTARWILKELGDSGHAPN---AITYTTIMKCCFRNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (410)
...++.+.|..+|++.... +.++ ...|...+..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555543 2111 124555555555555555555555555443
No 159
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.12 E-value=8.5e-05 Score=49.89 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=8.0
Q ss_pred HHHHHhhcCchHHHHHHHHHH
Q 015246 107 MLNGLCKNRYTDNALRMFRGL 127 (410)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~ 127 (410)
+..++...+++++|.+.++..
T Consensus 40 ~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 40 LAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 160
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=6.6e-06 Score=42.95 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=10.0
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
|+.++.+|++.|+++.|.++|+.|.+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333333333333333333333333333
No 161
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.10 E-value=0.0022 Score=51.41 Aligned_cols=58 Identities=10% Similarity=-0.101 Sum_probs=31.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHH---HHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 72 LMHCLFQLGKPDEANRVFQDMICGDLTPCTATF---NIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 72 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
....+...|++++|.+.|+.+.... +-+.... -.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444455666666666666666543 1112221 23455666666666666666666654
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.09 E-value=0.00048 Score=56.89 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
+..+...+.+.|++++|.++|+++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444445555555555555555543
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.09 E-value=1.3e-05 Score=52.37 Aligned_cols=20 Identities=30% Similarity=0.762 Sum_probs=8.3
Q ss_pred HHHHHHhccchhHHHHHHHH
Q 015246 177 IMKCCFRNRKYKLGLEILSA 196 (410)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~ 196 (410)
+..++.+.|++++|..+++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444433
No 164
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.08 E-value=4.9e-05 Score=50.64 Aligned_cols=76 Identities=18% Similarity=0.388 Sum_probs=66.5
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------ChhhHHHHHHHHHHcCCCCChHhHHHHH
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGI-SPDVVTYNSLIAGATRNS--------LLSCSLDLLDEMLEMGIPPDVWSYNSLM 73 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 73 (410)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 5567778999999999999999998 899999999999887643 3456789999999999999999999999
Q ss_pred HHHHh
Q 015246 74 HCLFQ 78 (410)
Q Consensus 74 ~~~~~ 78 (410)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 88764
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.07 E-value=1.9e-05 Score=51.55 Aligned_cols=12 Identities=17% Similarity=-0.056 Sum_probs=4.5
Q ss_pred hhHHHHHHHHHH
Q 015246 292 IKGARLHLEYMN 303 (410)
Q Consensus 292 ~~~a~~~~~~~~ 303 (410)
++.|+.+++++.
T Consensus 5 y~~Ai~~~~k~~ 16 (84)
T PF12895_consen 5 YENAIKYYEKLL 16 (84)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 166
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0048 Score=51.49 Aligned_cols=156 Identities=13% Similarity=-0.020 Sum_probs=80.0
Q ss_pred HHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh-------------HHH
Q 015246 180 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS-------------YNT 246 (410)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ 246 (410)
++...+++++|.+.--..++.. ..+......-..++...++.+.+...|++.+..+ |+... +..
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHh
Confidence 4445566666665555555443 2222222222223334455566666666555432 21110 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 015246 247 LINLYCKEGKLEAAYLLLDEMEKQ---GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLG 322 (410)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 322 (410)
=..-..+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+..+|+.-.+...+. .|. ...+..-..++.
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l 332 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHL 332 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHH
Confidence 112234567777777777776643 23444555666666666777777777777666653 222 222333334555
Q ss_pred ccCChHHHHHHHHhhccC
Q 015246 323 KDGKIDHAINVFESMEVK 340 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~ 340 (410)
..++|++|.+-++...+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 566777777777665544
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.06 E-value=0.00032 Score=50.60 Aligned_cols=98 Identities=9% Similarity=0.025 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015246 136 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAA 215 (410)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (410)
......+...+...|++++|..+|+.+....+ -+...|..|..++...|++++|+..|......+ +.++..+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 33444555566667777777777777666432 245556666667777777777777777777665 5566666667777
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q 015246 216 FVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~~ 235 (410)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766654
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=3.3e-05 Score=61.07 Aligned_cols=99 Identities=15% Similarity=0.063 Sum_probs=80.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhH
Q 015246 285 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSA 361 (410)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A 361 (410)
-..+.+++++|+..|.+.++.. +-|...|.--..+|.+.|.++.|++-.+.....|+ .+|..|..+|...|++.+|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4667899999999999999962 44566677778899999999999999998887754 5788889999999999999
Q ss_pred HHHHHHHHHcCCCCcHhhHHHHHHH
Q 015246 362 SKLLLSCLKSGVRILKSAQKAVVDG 386 (410)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (410)
++.|++.++ +.|+..+|..=+..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 999999995 46776666554443
No 169
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.04 E-value=0.0003 Score=58.12 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=13.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 015246 209 YCTVIAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (410)
|......|...+++++|...|.+..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHH
Confidence 4444555555566666666655543
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.00019 Score=61.26 Aligned_cols=88 Identities=7% Similarity=0.001 Sum_probs=49.5
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
+...|++++|++.|+++.+.+ +.+...|..+..++...|++++|+..++...+... .+...|..+..++...|++++|
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHH
Confidence 445566666666666666554 33445555555566666666666666666655422 2444555555556666666666
Q ss_pred HHHHHHHhcC
Q 015246 86 NRVFQDMICG 95 (410)
Q Consensus 86 ~~~~~~~~~~ 95 (410)
...|++.+..
T Consensus 90 ~~~~~~al~l 99 (356)
T PLN03088 90 KAALEKGASL 99 (356)
T ss_pred HHHHHHHHHh
Confidence 6666665544
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.02 E-value=0.00048 Score=52.23 Aligned_cols=85 Identities=15% Similarity=-0.014 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
+..+...+...|++++|...|++..+....+. ...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 116 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34444445555555555555555544321111 2345555555555666666666665555531 22334444444555
Q ss_pred HccCChHH
Q 015246 322 GKDGKIDH 329 (410)
Q Consensus 322 ~~~g~~~~ 329 (410)
...|+...
T Consensus 117 ~~~g~~~~ 124 (172)
T PRK02603 117 HKRGEKAE 124 (172)
T ss_pred HHcCChHh
Confidence 55554433
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.00 E-value=0.00048 Score=52.21 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD--VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
..+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+..... +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3566667777778888888888888776432222 3567777778888888888888888877654 344556666666
Q ss_pred HHhhcCchHHH
Q 015246 110 GLCKNRYTDNA 120 (410)
Q Consensus 110 ~~~~~~~~~~a 120 (410)
++...|+...+
T Consensus 115 ~~~~~g~~~~a 125 (172)
T PRK02603 115 IYHKRGEKAEE 125 (172)
T ss_pred HHHHcCChHhH
Confidence 66666664433
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.00 E-value=0.00033 Score=52.93 Aligned_cols=100 Identities=15% Similarity=0.068 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCChhHHHHH
Q 015246 12 FDAGYTILNRMR-EAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPP--DVWSYNSLMHCLFQLGKPDEANRV 88 (410)
Q Consensus 12 ~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 88 (410)
+..+.+.+..+. ..+.......|..+...+...|++++|...|+........+ ...++..+..++...|++++|...
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444445555553 22212224455666666667777777777777776542221 123566666777777777777777
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHh
Q 015246 89 FQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
++...... +.....+..+...+.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHH
Confidence 77766543 333444555555554
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.94 E-value=0.014 Score=52.37 Aligned_cols=325 Identities=13% Similarity=0.052 Sum_probs=165.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHH----------HHHHhcCChhHHHHHHHHHhcCCC
Q 015246 28 SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLM----------HCLFQLGKPDEANRVFQDMICGDL 97 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~a~~~~~~~~~~~~ 97 (410)
.|.+..|..+.......-.++.|...|-+.... +.......|- ..-.--|++++|.++|-++..++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 588889988888877777778787777655432 1221111111 12223578888888887776543
Q ss_pred CCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHH
Q 015246 98 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT 176 (410)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 176 (410)
..+..+.+.|++-...++++.--.. .-..-...|+.+...+.....+++|.+.|..-.. ...
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TEN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHh
Confidence 2355666777777776666532111 0001234677777777777777777777765432 123
Q ss_pred HHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015246 177 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 256 (410)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (410)
.+.++.+..++++.+.+...+ +.+....-.+..++.+.|.-++|.+.+-+-. . | ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-c-----HHHHHHHHHHHH
Confidence 455555555555544444332 3344444555666666666666655443221 1 1 223445555555
Q ss_pred HHHHHHHHHHHHhCCC-----------CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCH----HHHHHH
Q 015246 257 LEAAYLLLDEMEKQGF-----------ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDSNL----EAYNCI 317 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~----~~~~~l 317 (410)
|.+|.++-++..-..+ -.+. -....|..+.+.|+.-+|-+++.+|.+. +.+|-. .+...+
T Consensus 894 W~~avelaq~~~l~qv~tliak~aaqll~~~-~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al 972 (1189)
T KOG2041|consen 894 WGEAVELAQRFQLPQVQTLIAKQAAQLLADA-NHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL 972 (1189)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhc-chHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH
Confidence 6555555443211000 0000 1122344556666666666666555432 222211 011111
Q ss_pred -HHH----------HHccCChHHHHHHHHhhccC-------------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc-C
Q 015246 318 -VDR----------LGKDGKIDHAINVFESMEVK-------------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-G 372 (410)
Q Consensus 318 -~~~----------~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~ 372 (410)
+.- -.+.|..++|..+++..... ....|..+.+--...|..+.|++.--.+.+. +
T Consensus 973 LvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd 1052 (1189)
T KOG2041|consen 973 LVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYED 1052 (1189)
T ss_pred HHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhh
Confidence 110 11345555665555433221 2334445555556678888887765555432 3
Q ss_pred CCCcHhhHHHHHHHHh
Q 015246 373 VRILKSAQKAVVDGLR 388 (410)
Q Consensus 373 ~~~~~~~~~~l~~~~~ 388 (410)
+-|....|..+.-+-+
T Consensus 1053 ~lpP~eiySllALaac 1068 (1189)
T KOG2041|consen 1053 FLPPAEIYSLLALAAC 1068 (1189)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 4455566655544433
No 175
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.94 E-value=0.00098 Score=46.32 Aligned_cols=55 Identities=20% Similarity=0.082 Sum_probs=23.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 250 LYCKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
++-..|+.++|..+|++....|+... ...+..+..++...|++++|..+++....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444444444444443222 12333344444444455555444444443
No 176
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0018 Score=53.90 Aligned_cols=260 Identities=13% Similarity=0.004 Sum_probs=146.9
Q ss_pred HHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc
Q 015246 105 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 184 (410)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (410)
......+.+...+..|+..+....+..+. +...|..-+..+...|+++++.--.+.-.+... -........-+++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC-Cccccccchhhhhhhh
Confidence 34456777888888999999888887443 566677777777788888887766655544321 1233455556666667
Q ss_pred cchhHHHHHHHHHHHc---C-------------CCCChhhHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 185 RKYKLGLEILSAMKRK---G-------------YTFDGFGYCTV-IAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 185 ~~~~~a~~~~~~~~~~---~-------------~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
++..+|.+.++.-... + -+|.-.++..+ ..++.-.|+.++|...--.+.+.. ....+...
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~ 207 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALY 207 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHH
Confidence 7777777666532200 0 01111222211 234455667777766666665542 11222233
Q ss_pred HH--HHHhcCCHHHHHHHHHHHHhCCCCCchHHH---HHHHHHH----------HhcCChhHHHHHHHHHHhc---CCCC
Q 015246 248 IN--LYCKEGKLEAAYLLLDEMEKQGFECDKYTH---TILIDGL----------CKAGNIKGARLHLEYMNKI---GFDS 309 (410)
Q Consensus 248 ~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~----------~~~~~~~~a~~~~~~~~~~---~~~~ 309 (410)
++ ++...++.+.+...|++.+..+ |+...- ......+ .+.|++..|.+.+.+.+.. +..|
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 33 3445566777777777766552 332221 1122222 3456777777777776653 2334
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHH---HHHHHHhcCChhhHHHHHHHHHHc
Q 015246 310 NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSS---MVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+...|.....+..+.|+.++|+.--+.....|+..... -..++...+++++|.+-++++.+.
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555566667777777777766666664443222 234455567777777777776654
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.93 E-value=2.2e-05 Score=48.94 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=30.5
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 354 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
..|++++|++.|+++.... |.+...+..++.+|.+.|++++|.++++++....++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4555666666666665542 335555555566666666666666666655555443
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=0.00074 Score=53.95 Aligned_cols=114 Identities=14% Similarity=0.033 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC---ChHHHHHH
Q 015246 257 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG---KIDHAINV 333 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~ 333 (410)
.+....-++.-...+ +-|...|..|...|...|++..|...|....+. -++++..+..+..++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 444444455445444 447888888999999999999999999888876 3566777777777665443 35678888
Q ss_pred HHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 334 FESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 334 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
|+++... ++.+...|...+...|++.+|...|+.|++..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8888766 66677778888888899999999999888763
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.89 E-value=0.0011 Score=59.24 Aligned_cols=64 Identities=9% Similarity=-0.067 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
..|..+.......|++++|...++++++. .|+...|..++..+...|+.++|...+++..+.+|
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34444444444445555555555555543 23444455555555555555555555555544444
No 180
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.89 E-value=0.0026 Score=49.59 Aligned_cols=73 Identities=8% Similarity=0.017 Sum_probs=43.8
Q ss_pred cCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---HhhHHHHHHHHhhcCCHHHHH
Q 015246 324 DGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL---KSAQKAVVDGLRHSGCRREAK 397 (410)
Q Consensus 324 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~ 397 (410)
..-..+|...+..+...-...-..++..|.+.|.+..|..-++.+++. .+.+ ...+..++.+|.+.|..+.|.
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 334445555444444432222334567788888888898888888876 2222 345667778888888877544
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.89 E-value=0.00073 Score=51.02 Aligned_cols=62 Identities=13% Similarity=-0.117 Sum_probs=31.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.+..+...+...|++++|...|++.......+ ...++..+...+...|++++|...++...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555666665555554432111 123455555555566666666666655554
No 182
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.87 E-value=0.014 Score=50.60 Aligned_cols=358 Identities=11% Similarity=0.051 Sum_probs=208.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh-cCChh----
Q 015246 9 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ-LGKPD---- 83 (410)
Q Consensus 9 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~---- 83 (410)
...++++.+.++++...- +-+...|..-|..-...++++....+|.+-...- .+...|...++.-.+ .|+..
T Consensus 32 t~~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~ 108 (656)
T KOG1914|consen 32 TQPIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYLSYVRETKGKLFGYRE 108 (656)
T ss_pred cCCHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHHHHHHHHccCcchHHH
Confidence 338999999999998652 5567789999999999999999999999887643 245555555543322 22222
Q ss_pred HHHHHHHHHhcC-CCCC-ChhHHHHHHHH---------HhhcCchHHHHHHHHHHHhCCCCCCHHHHH------HHHHH-
Q 015246 84 EANRVFQDMICG-DLTP-CTATFNIMLNG---------LCKNRYTDNALRMFRGLQKHGFVPELVTYN------ILIKG- 145 (410)
Q Consensus 84 ~a~~~~~~~~~~-~~~~-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~l~~~- 145 (410)
...+.|+-.... |+.+ +...|+..+.. +..+.+++...+++.++....+.-=...|+ .=++.
T Consensus 109 ~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~ 188 (656)
T KOG1914|consen 109 KMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINII 188 (656)
T ss_pred HHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHH
Confidence 223333333322 3222 22344444432 334556777777777666532110011111 00000
Q ss_pred ----H--HhcCCHHHHHHHHHHHhh--CC---------------------------------------------------
Q 015246 146 ----L--CKAGRLRTARWILKELGD--SG--------------------------------------------------- 166 (410)
Q Consensus 146 ----~--~~~~~~~~a~~~~~~~~~--~~--------------------------------------------------- 166 (410)
+ -+...+-.|.++++++.. .|
T Consensus 189 tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yay 268 (656)
T KOG1914|consen 189 TARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAY 268 (656)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHH
Confidence 0 112223333333333211 01
Q ss_pred --------CCCcHHHH-HHHH----HHHHhccc-------hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC---CHH
Q 015246 167 --------HAPNAITY-TTIM----KCCFRNRK-------YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG---RLK 223 (410)
Q Consensus 167 --------~~~~~~~~-~~l~----~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~ 223 (410)
..|+.... ...+ ..+...|+ -+++.++++.....-...+...|..+...-...- ..+
T Consensus 269 eQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~ 348 (656)
T KOG1914|consen 269 EQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEK 348 (656)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhh
Confidence 01111000 0000 01111122 2344444544443322223333333322211111 355
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 224 EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
.....++++.......-.-+|..++..-.+..-...|..+|.++.+.+..+ +.....+++.-++ .++.+-|.++|+--
T Consensus 349 ~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLG 427 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELG 427 (656)
T ss_pred hhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHH
Confidence 666677776654333234567788888888888999999999999887666 5666777776554 67889999999986
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 303 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.+. ...++.-....+.-+...++-..+..+|++.... ....|..++.--..-|+...+.++-+++...
T Consensus 428 Lkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 428 LKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 664 3445556677788888999999999999998776 3478999999999999999999988887643
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00042 Score=55.05 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=57.7
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHH
Q 015246 40 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDN 119 (410)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (410)
-+.+.+++++|+..|.+.++.. |-|...|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 3445666666666666666642 2245555556666666666666666666665544 3345566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHH
Q 015246 120 ALRMFRGLQKHGFVPELVTYNI 141 (410)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~ 141 (410)
|.+.|++.... .|+-.+|-.
T Consensus 168 A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHHH
Confidence 66666666653 444444433
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.83 E-value=0.0061 Score=45.02 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=98.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCchHHHHH
Q 015246 203 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECDKYTHTI 281 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 281 (410)
.|+...-..+..+....|+..+|...|++...--...|......+.++....+++..|...++++.+.+. .-++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 5566666677788888888888888888887654556777777788888888888888888888876531 112345566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
+.+.+...|.+.+|...|+..... -|+...-......+.++|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 778888888888898888888874 5676666667777888888777765544443
No 185
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.83 E-value=0.0064 Score=47.45 Aligned_cols=60 Identities=12% Similarity=0.078 Sum_probs=35.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMGIP--PDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
.....+...|++.+|.+.|+.+...... -.......++.++.+.|+++.|...+++.++.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445556677777777777777765211 12344555666777777777777777776654
No 186
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.83 E-value=0.0031 Score=56.48 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015246 171 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 234 (410)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (410)
...+..+.......|++++|...++++...+ |+...|..+...+...|+.++|.+.+++...
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444444555555555555555553 3445555555555555666666555555554
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.81 E-value=0.0004 Score=56.02 Aligned_cols=92 Identities=13% Similarity=0.010 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHhhccC------CchhHHH
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSS 347 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ 347 (410)
.|...+....+.|++++|...|+.+.+. .|+ +..+..+..+|...|++++|...|+.+... .+..+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444445556777777777776664 232 245556666666677777777666666533 2334444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHc
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++.++...|+.++|...|+++++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555566666667777766666654
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0024 Score=51.15 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=57.5
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc---CchHHHHHHHHHHHhCCCCCCHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN---RYTDNALRMFRGLQKHGFVPELVTYNI 141 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (410)
|...|..|...|...|+++.|...|.+..+.. +++...+..+..++... .+..++..+|+++.+... .|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHHH
Confidence 55666666666666666666666666665554 45555555555444432 234556666666665532 25555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC
Q 015246 142 LIKGLCKAGRLRTARWILKELGDS 165 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~ 165 (410)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 566666666666666666666654
No 189
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.79 E-value=0.00011 Score=45.77 Aligned_cols=53 Identities=11% Similarity=0.136 Sum_probs=32.6
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 7 CQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 60 (410)
.+.|++++|+++|+.+.... +.+...+..+..+|.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35566666666666666554 335556666666666666666666666666654
No 190
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=4e-05 Score=38.90 Aligned_cols=29 Identities=45% Similarity=0.670 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMG 61 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 61 (410)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666654
No 191
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.78 E-value=4.2e-05 Score=38.82 Aligned_cols=25 Identities=28% Similarity=0.667 Sum_probs=9.5
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHH
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQ 128 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (410)
|+.++++|++.|++++|.++|++|.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3333333333333333333333333
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.78 E-value=0.00014 Score=46.06 Aligned_cols=58 Identities=12% Similarity=-0.092 Sum_probs=31.8
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 351 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
.+.+.+++++|.+++++++..+ |.+...+...+.++.+.|++++|.+.++++.+.+++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 4455555555555555555543 334455555555555555555555555555555443
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.76 E-value=0.0029 Score=44.01 Aligned_cols=53 Identities=19% Similarity=0.209 Sum_probs=21.7
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCChhHHHHHHHHHh
Q 015246 41 ATRNSLLSCSLDLLDEMLEMGIPPD--VWSYNSLMHCLFQLGKPDEANRVFQDMI 93 (410)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 93 (410)
+-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444433221 1223333344444444444444444443
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.76 E-value=0.001 Score=48.27 Aligned_cols=84 Identities=7% Similarity=-0.006 Sum_probs=56.9
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhcc---CCchhHHHHHHHHHhcCChhhHH
Q 015246 286 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---KDSFTYSSMVHNLCKAKRLPSAS 362 (410)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 362 (410)
+...|++++|..+|+-+.-.+ +.+..-|..|..++-..+++++|...|..... .|+..+.....++...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 456777777777777766543 33455566667777777777777777764432 26666667777777777777777
Q ss_pred HHHHHHHH
Q 015246 363 KLLLSCLK 370 (410)
Q Consensus 363 ~~~~~~~~ 370 (410)
..|...++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 77777765
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.00029 Score=43.32 Aligned_cols=56 Identities=13% Similarity=0.104 Sum_probs=34.9
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 60 (410)
..+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566666666666666666654 335556666666666666666666666666553
No 196
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.62 E-value=0.0025 Score=48.46 Aligned_cols=105 Identities=18% Similarity=0.283 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh
Q 015246 28 SPDVVTYNSLIAGATRN-----SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA 102 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 102 (410)
..+..+|..+++.|.+. |..+=....+..|.+.|+.-|..+|+.|++++=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 45666777777666543 4555566666667777777777777777766543 2221 011111110
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
.- --.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00 123446688889999999988999999998888877765
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.60 E-value=0.032 Score=49.68 Aligned_cols=87 Identities=15% Similarity=0.041 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchh-----------
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT----------- 344 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------- 344 (410)
..+...+..-+.+...+.-|-++|..|-.. ..+++.....++|++|..+-++.++--+..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 344555555555566667777777666432 245667777788888888777766652222
Q ss_pred --HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 345 --YSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 345 --~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+...-.+|.+.|+..+|..+++++...
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 222334666777777888887777543
No 198
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.60 E-value=0.031 Score=46.59 Aligned_cols=290 Identities=13% Similarity=0.067 Sum_probs=175.3
Q ss_pred HHHHHHHHh--hcCchHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHhhCCCCCcHHH--HHHH
Q 015246 104 FNIMLNGLC--KNRYTDNALRMFRGLQKHGFVPELVTYNILI--KGLCKAGRLRTARWILKELGDSGHAPNAIT--YTTI 177 (410)
Q Consensus 104 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l 177 (410)
|..|-.++. -.|+-..|.++-.+..+. +..|....-.++ ++-.-.|+++.|.+-|+.|... |.... ...|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 444444333 356777777766665432 222333333333 3344578888888888888762 22221 1222
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCChhh--HHHHHHHH---
Q 015246 178 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVS--YNTLINLY--- 251 (410)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~--- 251 (410)
.-...+.|+.+.|...-+..-..- +.-.......+...+..|+++.|+++++.-.... +.++..- -..|+.+-
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 223356788888888877776653 4445667778888888899999998888766542 2233221 11222211
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHH
Q 015246 252 CKEGKLEAAYLLLDEMEKQGFECDKY-THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHA 330 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 330 (410)
.-..+...|...-.+..+. .||.. .-....+++.+.|+..++-.+++.+-+....|+ ++. +..+.+.|+....
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~--lY~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IAL--LYVRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHH--HHHHhcCCCcHHH
Confidence 1123455566555555443 44433 223345678888899999899988888644444 332 2334555553322
Q ss_pred ----HHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh-hcCCHHHHHHHHHHHHH
Q 015246 331 ----INVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR-HSGCRREAKKIQSKIRM 405 (410)
Q Consensus 331 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 405 (410)
.+-++.|...+..+...+..+-...|++..|..--+.... ..|....|..+...-. ..||-.++..++.+..+
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1234455555777777788888888888888877777764 3677778877777654 44888888888877655
Q ss_pred c
Q 015246 406 A 406 (410)
Q Consensus 406 ~ 406 (410)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 4
No 199
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.58 E-value=0.033 Score=46.56 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 322 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (410)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++...+-.. + -++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHH
Confidence 33444444555565555555544442 34555566666666666666555443221 1 12244555566666
Q ss_pred ccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHH
Q 015246 323 KDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
+.|...+|..+...+. +..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~~------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhCC------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666665555421 23444555666666666555444
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00065 Score=42.33 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-RLKEATDYMEQMV 233 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 233 (410)
.|..+...+...|++++|+..|++..+.. +.+...+..+..++...| ++++|++.+++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34444444444444444444444444443 233334444444444444 3444444444443
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.55 E-value=0.0011 Score=50.42 Aligned_cols=105 Identities=12% Similarity=0.074 Sum_probs=72.8
Q ss_pred CChHhHHHHHHHHHh-----cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHH
Q 015246 64 PDVWSYNSLMHCLFQ-----LGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT 138 (410)
Q Consensus 64 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 138 (410)
.+..+|..+++.+.+ .|..+-....+..|.+-|+..|..+|+.|+..+=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 466777777777764 35666667777778888888888888888877654 2211 111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 139 YNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
+..+.. .--.+-+-|++++++|...|+-||..++..++..+.+.+.+
T Consensus 108 fQ~~F~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 108 FQAEFM--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHhc--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 111111 11234567899999999999999999999999999877654
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.54 E-value=0.0016 Score=54.16 Aligned_cols=263 Identities=14% Similarity=0.076 Sum_probs=151.5
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHH--HHc--C-CCCChHhHHHHHHH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDV----VTYNSLIAGATRNSLLSCSLDLLDEM--LEM--G-IPPDVWSYNSLMHC 75 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~-~~~~~~~~~~l~~~ 75 (410)
-+++.|+....+.+|+...+.| ..|. .+|..|..+|...+++++|++....= ..+ | -.-...+-..|...
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4789999999999999999988 3343 35666777888888999998764321 111 1 00122233344445
Q ss_pred HHhcCChhHHHHHHHHH----hcCCC-CCChhHHHHHHHHHhhcCc--------------------hHHHHHHHHHHHh-
Q 015246 76 LFQLGKPDEANRVFQDM----ICGDL-TPCTATFNIMLNGLCKNRY--------------------TDNALRMFRGLQK- 129 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~----~~~~~-~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~- 129 (410)
+-..|.+++|.-...+- .+.|- ......+..+...|...|. ++.|.+.|.+=.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 55566666665433221 11111 1122344445555554332 2334444433211
Q ss_pred ---CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----hCCCC-CcHHHHHHHHHHHHhccchhHHHHHHHHHHHc
Q 015246 130 ---HGFV-PELVTYNILIKGLCKAGRLRTARWILKELG----DSGHA-PNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 130 ---~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (410)
.|-. .-...|..|.+.|.-.|+++.|+...+.-. +.|-. .....+..+..++.-.|+++.|.+.|+.....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 012345555556666788888877655432 22211 23455677788888889999998888775433
Q ss_pred CC-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015246 201 GY-----TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD-----GVQLDIVSYNTLINLYCKEGKLEAAYLLLDEME 268 (410)
Q Consensus 201 ~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (410)
.+ .....+.-.+...|.-..++++|+.++.+-+.. ...-....+-.+..+|...|..++|+.+.....
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11 223344556777777777888888877654331 112245667778888888888888887766554
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.52 E-value=0.0016 Score=54.24 Aligned_cols=127 Identities=15% Similarity=0.084 Sum_probs=74.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCC-CchHHHHHHHHHHHhcCChhHHHHHHHHHH----hcCC-CCCHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEM----EKQGFE-CDKYTHTILIDGLCKAGNIKGARLHLEYMN----KIGF-DSNLE 312 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~ 312 (410)
.|..+...|.-.|+++.|+..-+.= .+-|-. .....+..+..++.-.|+++.|.+.|+... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4445555555667777776544321 121211 122355666777777777887777776543 2221 12234
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 313 AYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
+...+...|.-..+++.|+..+.+-... ...++..|..++...|..++|+.+.+.-+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4556666777677777777776654322 44567777777777777777777665544
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.51 E-value=0.068 Score=48.22 Aligned_cols=108 Identities=9% Similarity=0.019 Sum_probs=52.4
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
+++.++|++... ++.+++... .+...-.+-+. +--|++++|.++|-++.+++ ..+..+.+.|+|-
T Consensus 713 ~AFVrc~dY~Gi-k~vkrl~~i---~s~~~q~aei~--~~~g~feeaek~yld~drrD---------LAielr~klgDwf 777 (1189)
T KOG2041|consen 713 HAFVRCGDYAGI-KLVKRLRTI---HSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD---------LAIELRKKLGDWF 777 (1189)
T ss_pred hhhhhhccccch-hHHHHhhhh---hhHHHHhHhHh--hhhcchhHhhhhhhccchhh---------hhHHHHHhhhhHH
Confidence 356677776543 333333321 11112122222 23477777777776665542 2344555666666
Q ss_pred HHHHHHHHHhcC-CCCCChhHHHHHHHHHhhcCchHHHHHHHHH
Q 015246 84 EANRVFQDMICG-DLTPCTATFNIMLNGLCKNRYTDNALRMFRG 126 (410)
Q Consensus 84 ~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 126 (410)
...++++.--.. +-..-...|+.+...++....|++|.+.|..
T Consensus 778 rV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 778 RVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666655432110 0011134555566666665666666555544
No 205
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.49 E-value=0.017 Score=51.36 Aligned_cols=173 Identities=17% Similarity=0.118 Sum_probs=108.5
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCch-----HHHHHHHHHHHh----cCChhHH
Q 015246 226 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDK-----YTHTILIDGLCK----AGNIKGA 295 (410)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a 295 (410)
.-+|.-+... +|| .+..++....=.||-+.+++.+.+..+.+ +.-.. -.|..++..+.. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3445555543 333 33455555566677777777777765532 21111 123333333322 3466778
Q ss_pred HHHHHHHHhcCCCCCHHHHHH-HHHHHHccCChHHHHHHHHhhccC-------CchhHHHHHHHHHhcCChhhHHHHHHH
Q 015246 296 RLHLEYMNKIGFDSNLEAYNC-IVDRLGKDGKIDHAINVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
.+++..+.+. -|+...|.. -.+.+...|++++|.+.|++.... ....+..+..++.-..++++|.+.+.+
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8888888874 456555433 345667788899999888865542 444566777888889999999999999
Q ss_pred HHHcCCCCcHhhHHHHHHH-HhhcCCH-------HHHHHHHHHHHH
Q 015246 368 CLKSGVRILKSAQKAVVDG-LRHSGCR-------REAKKIQSKIRM 405 (410)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~-~~~~g~~-------~~a~~~~~~~~~ 405 (410)
+.+.. ..+..+|..+..+ +...|+. ++|.+++.++..
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 98764 4455555555444 4678877 888888877643
No 206
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.45 E-value=0.0071 Score=44.39 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCcHHH
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD-----SGHAPNAIT 173 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 173 (410)
...++..+...|++++|..+.+.+.... |.+...|..+|.+|...|+...|.++|+.+.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344455555556666666665555542 22555555566666666666666555555432 355555444
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.43 E-value=0.0023 Score=51.70 Aligned_cols=89 Identities=12% Similarity=0.033 Sum_probs=43.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCCh
Q 015246 252 CKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKI 327 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 327 (410)
.+.|++++|...|+.+.+...... +..+..+...|...|++++|...|+.+.+.- -+.....+..+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444555566555555555421110 2344555555555566666665555555421 011133333444455555556
Q ss_pred HHHHHHHHhhccC
Q 015246 328 DHAINVFESMEVK 340 (410)
Q Consensus 328 ~~A~~~~~~~~~~ 340 (410)
+.|...|+.+...
T Consensus 234 ~~A~~~~~~vi~~ 246 (263)
T PRK10803 234 AKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555555443
No 208
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.43 E-value=0.061 Score=45.88 Aligned_cols=137 Identities=9% Similarity=-0.018 Sum_probs=84.6
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHH--HH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVV------TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHC--LF 77 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 77 (410)
+.+++++++|.++|.++.+.. ..++. .-+.++++|..+ +.+.....+....+.. | ...|..+..+ +.
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 467899999999999997653 22222 234566776544 5666666666665532 2 2234444433 34
Q ss_pred hcCChhHHHHHHHHHhcC--CCCC------------ChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC----CCCCHHHH
Q 015246 78 QLGKPDEANRVFQDMICG--DLTP------------CTATFNIMLNGLCKNRYTDNALRMFRGLQKHG----FVPELVTY 139 (410)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~ 139 (410)
+.+.+.+|.+.+...... +..| |-..=+..+.++...|++.++..+++++...= ..-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 678888888887766544 2111 11222456778888999999998888876542 23577777
Q ss_pred HHHHHHHH
Q 015246 140 NILIKGLC 147 (410)
Q Consensus 140 ~~l~~~~~ 147 (410)
+.++-.+.
T Consensus 171 d~~vlmls 178 (549)
T PF07079_consen 171 DRAVLMLS 178 (549)
T ss_pred HHHHHHHh
Confidence 77544443
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.42 E-value=0.05 Score=48.55 Aligned_cols=86 Identities=13% Similarity=0.080 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-----------H
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL-----------E 312 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----------~ 312 (410)
...+..-+.+...+..|.++|..|-+. ..+++.....+++.+|..+-++.-+. .|+. .
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhh
Confidence 333333344444455555555554321 23344445555555555554443331 2221 1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 313 AYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 313 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
-|...-.+|.+.|+-.+|.++++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1223334666777778888888777654
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.38 E-value=0.0018 Score=40.88 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=36.4
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 60 (410)
..|.+.++++.|+++++.+...+ |.++..+.....++...|++++|.+.++...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45666667777777777666664 445556666666666666777776666666654
No 211
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.37 E-value=0.045 Score=43.12 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=33.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCc---HhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRIL---KSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
+.+.|.+.|.+-.|..-+++|++. .+.. ...+..+..+|.+.|-.++|.+.-.-+....+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 345566666666666666666654 2222 23344445566666666666665555544443
No 212
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.37 E-value=0.091 Score=46.55 Aligned_cols=370 Identities=10% Similarity=0.050 Sum_probs=207.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHH-hcCChhHHHHH
Q 015246 11 SFDAGYTILNRMREAGISPDVV-TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLF-QLGKPDEANRV 88 (410)
Q Consensus 11 ~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~ 88 (410)
+.+.+..+++.+... .|-.. -|......=.+.|..+.+.++|++-+.. ++.+...|......+. ..|+.+.....
T Consensus 60 ~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~ 136 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDL 136 (577)
T ss_pred HHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 346666777777754 34433 5566666666778888888888887763 6666666666555443 46777777788
Q ss_pred HHHHhcC-CCC-CChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hc------CCHHHHHH
Q 015246 89 FQDMICG-DLT-PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC---KA------GRLRTARW 157 (410)
Q Consensus 89 ~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~------~~~~~a~~ 157 (410)
|+..... |.. .+...|...+..-..++++.....++++..+. ....|+....-|. .. ...+++.+
T Consensus 137 fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~ 212 (577)
T KOG1258|consen 137 FERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQ 212 (577)
T ss_pred HHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHH
Confidence 8777654 322 34567777777777788888888888888764 1222222221111 11 12222222
Q ss_pred HHHHHhh-------------------CCCCCc---HHHHHHHHH-------HHHhccchhHHHHHHHHHHHcC---CC--
Q 015246 158 ILKELGD-------------------SGHAPN---AITYTTIMK-------CCFRNRKYKLGLEILSAMKRKG---YT-- 203 (410)
Q Consensus 158 ~~~~~~~-------------------~~~~~~---~~~~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~---~~-- 203 (410)
+-..... .-..|. ....+.+.. .+............++.-.+.. ++
T Consensus 213 l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl 292 (577)
T KOG1258|consen 213 LRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPL 292 (577)
T ss_pred HhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcc
Confidence 2221111 000011 011111111 1111122222222333322221 11
Q ss_pred --CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHH
Q 015246 204 --FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTI 281 (410)
Q Consensus 204 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 281 (410)
++..+|...+..-...|+.+.+.-+++...-. ...-...|-..+.-....|+.+-|..++....+--.+-.+.+...
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~ 371 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLL 371 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHH
Confidence 23445667777777889999998888887642 222234455555555555888888887777665443333333322
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHH---HHHHhhccC--CchhHHHHHHHH---
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAI---NVFESMEVK--DSFTYSSMVHNL--- 352 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~--~~~~~~~l~~~~--- 352 (410)
-..-.-..|++..|..+++.+.+. . |+ ...-..-+....+.|..+.+. .++...... +......+..-+
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 233345578999999999999876 3 44 333334455667778888777 444433333 333333333222
Q ss_pred --HhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC
Q 015246 353 --CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 391 (410)
Q Consensus 353 --~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (410)
.-.++.+.|..++.++.+. .+++...|..++..+...+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 3367888999999999876 4677777777777665544
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.11 Score=47.29 Aligned_cols=106 Identities=14% Similarity=0.082 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
.+.-+.-+...|+..+|.++-.+.. .||...|..-+.++...+++++-+++-+... ++.-|.-.+.+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 3333444444555555554444433 3444455555555555555544433322211 12223444455555
Q ss_pred cCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHH
Q 015246 324 DGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKL 364 (410)
Q Consensus 324 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 364 (410)
.|+.++|.+.+-+..... ....+|.+.|++.+|.+.
T Consensus 757 ~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred cccHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHH
Confidence 555555555544433221 334444455555444443
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.32 E-value=0.082 Score=44.83 Aligned_cols=76 Identities=9% Similarity=0.062 Sum_probs=37.8
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcC---CCCChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKG---YTFDGFGYCTVIAAFVK---IGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
.++-+|....+++..+++++.+.... +......-.....++.+ .|+.++|.+++..+......+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445555666666666666655441 11112222233334444 5666666666666444444555555555554
Q ss_pred HH
Q 015246 250 LY 251 (410)
Q Consensus 250 ~~ 251 (410)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.30 E-value=0.00087 Score=42.97 Aligned_cols=63 Identities=13% Similarity=0.012 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc--CCC---Cc-HhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKS--GVR---IL-KSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
.+++.+..+|...|++++|+..|+++++. ... |+ ..++..++.++...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35677777888888888888888877643 112 22 45777888888899999999998888754
No 216
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.0022 Score=53.42 Aligned_cols=124 Identities=15% Similarity=0.029 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc-----CCCC---------CHHHHHHHHHHHHccCChHHHHHHHHhhccC---Cc
Q 015246 280 TILIDGLCKAGNIKGARLHLEYMNKI-----GFDS---------NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DS 342 (410)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~ 342 (410)
..-...+.+.|++..|...|+++... +.++ -...+..+.-++.+.+++..|++........ |.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 34466788899999999998886542 1111 1224455667778888888888877766554 66
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhH-HHHHHHHhhcCCH-HHHHHHHHHHHH
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ-KAVVDGLRHSGCR-REAKKIQSKIRM 405 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~-~~a~~~~~~~~~ 405 (410)
-....-..++...|+++.|+..|+++++. .|+.... ..+...-.+..+. +...++|..|-.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666778888888888888888888865 4443433 3333333333333 334666666643
No 217
>PRK15331 chaperone protein SicA; Provisional
Probab=97.29 E-value=0.038 Score=40.41 Aligned_cols=88 Identities=8% Similarity=-0.118 Sum_probs=51.3
Q ss_pred HHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 015246 180 CCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEA 259 (410)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 259 (410)
-+...|++++|..+|.-+.-.+ +.+..-+..|..++-..+++++|...|......+. -|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3455666666666666666544 33444445555555566666666666665554432 244445555666666666666
Q ss_pred HHHHHHHHHh
Q 015246 260 AYLLLDEMEK 269 (410)
Q Consensus 260 a~~~~~~~~~ 269 (410)
|...|....+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6666666655
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.06 Score=42.42 Aligned_cols=129 Identities=12% Similarity=-0.022 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-----HHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-----LEAYNCI 317 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l 317 (410)
+.+.++.++.-.|.+.-....+++.++...+.++.....+++.-.+.|+.+.|...|++..+..-..+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556666667777777788888887776566777778888888888888888888887665322222 2223333
Q ss_pred HHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 318 VDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
...|.-.+++..|...+.++... ++...+.-.-+..-.|+..+|++.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566677888888888777665 5556666666667788888899988888865
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.061 Score=42.40 Aligned_cols=132 Identities=13% Similarity=0.098 Sum_probs=88.6
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHH-----H
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT-----I 177 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 177 (410)
..+.++.++.-.+++.-...++.++.+...+.++.....|++.-.+.|+.+.|...|++..+..-..+..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556666666777777888888888776666777778888888888888888888886655333333333332 2
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 015246 178 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
...+.-.+++..|...+.++...+ +.+....+.-.-+..-.|+..+|.+.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334555677777777777777664 445555555555556667788888888887775
No 220
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.26 E-value=0.0069 Score=44.46 Aligned_cols=94 Identities=20% Similarity=0.269 Sum_probs=44.9
Q ss_pred chHHHHHHHH---HHHhcCChhHHHHHHHHHHhc--C-CCCCHH------------------HHHHHHHHHHccCChHHH
Q 015246 275 DKYTHTILID---GLCKAGNIKGARLHLEYMNKI--G-FDSNLE------------------AYNCIVDRLGKDGKIDHA 330 (410)
Q Consensus 275 ~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~--~-~~~~~~------------------~~~~l~~~~~~~g~~~~A 330 (410)
|...|..++. .....++.+.+...++++... | +-|+.. ....++..+...|+++.|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 3444555533 335678888888888888753 1 111111 112233333445555555
Q ss_pred HHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 331 INVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 331 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 368 (410)
....+.+... +...|..++.++...|+..+|.+.|+++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 5555544433 3344555555555555555555555444
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.25 E-value=0.097 Score=44.39 Aligned_cols=167 Identities=14% Similarity=0.004 Sum_probs=96.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhcCC---CCCChhHHHHHHHHHhh---cCchHHHHHHHHHHHhCCCCCCHHHHH
Q 015246 67 WSYNSLMHCLFQLGKPDEANRVFQDMICGD---LTPCTATFNIMLNGLCK---NRYTDNALRMFRGLQKHGFVPELVTYN 140 (410)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (410)
.+...++-+|....+++...++.+.+.... +......-....-++.+ .|+.++|++++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 334455556777777888888877776541 12223333344445555 777888888887755555566777777
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchh----HHHHHH----HHHHHcCC-
Q 015246 141 ILIKGLCK---------AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK----LGLEIL----SAMKRKGY- 202 (410)
Q Consensus 141 ~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~a~~~~----~~~~~~~~- 202 (410)
.+.+.|-+ ....++|+..|.+.-+.. |+...--.++..+...|... +..++- ..+.+.|.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 77666532 223677788877765532 44333222222233333211 122222 11222332
Q ss_pred --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 015246 203 --TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 203 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
..+-..+.+++.+..-.|+.++|.+..+++.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 345556677888888889999999999888875
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.21 E-value=0.012 Score=41.82 Aligned_cols=50 Identities=12% Similarity=0.143 Sum_probs=23.8
Q ss_pred HccCChHHHHHHHHhhccC------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 322 GKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.+.|++++|.+.|+.+... ...+...++.++.+.+++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444455555555444443 2233344445555555555555555555543
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.20 E-value=0.12 Score=44.24 Aligned_cols=125 Identities=15% Similarity=0.206 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--Cc-hhHHHHHHHHHh
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIG-FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--DS-FTYSSMVHNLCK 354 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~l~~~~~~ 354 (410)
|...+....+....+.|..+|-++.+.+ ..++..++++++.-++ .|+...|..+|+.-... |. ..-...+..+..
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 3344455555666777778887777766 4456666666666443 56777777777765544 33 333445556667
Q ss_pred cCChhhHHHHHHHHHHcCCCCc--HhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 355 AKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 355 ~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
.++-..|..+|+..++. +..+ ...|..++..-..-|+...+..+-+++..
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77777777777765543 2222 45677777777777777776666665543
No 224
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.0093 Score=47.27 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=41.9
Q ss_pred HhcCChhHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHhhccC------CchhHHHHHHHHHhcCCh
Q 015246 287 CKAGNIKGARLHLEYMNKIGF--DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRL 358 (410)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~ 358 (410)
.+.|++..|...|...++... .-....+.-|..++...|++++|...|..+.+. -+..+.-+..+..+.|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 344555666665555554310 011233344555555555555555555554433 334444555555555555
Q ss_pred hhHHHHHHHHHHc
Q 015246 359 PSASKLLLSCLKS 371 (410)
Q Consensus 359 ~~A~~~~~~~~~~ 371 (410)
++|...|+++.+.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.10 E-value=0.0018 Score=41.45 Aligned_cols=27 Identities=15% Similarity=-0.123 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
.+++.+...|...|++++|+..+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666666666666666554
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=0.22 Score=45.44 Aligned_cols=326 Identities=15% Similarity=0.104 Sum_probs=183.3
Q ss_pred cCCCCChHhHHH-----HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch--HHHHHHHHHHHhCCC
Q 015246 60 MGIPPDVWSYNS-----LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT--DNALRMFRGLQKHGF 132 (410)
Q Consensus 60 ~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~ 132 (410)
.|++.+..-|.. +++-+...+.+..|.++-..+...-..- ...|.....-+.+..+. +++++.+++=.+...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 356555555543 4666777888888888877765322111 45666666666655321 223333332222212
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC-------
Q 015246 133 VPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA----PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG------- 201 (410)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 201 (410)
.....|..+.+.....|+++-|..+++.-...+.. .+..-+...+.-+...|+.+....++-.+..+-
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 24556777888888899999998888754332211 112223444555666777776666665554331
Q ss_pred ----CCCChhhHHHHHH--------HHHHcCCHHHHHHHH--HHHHHc-CCCCChhhHHHHHHHHHhcCCHH--------
Q 015246 202 ----YTFDGFGYCTVIA--------AFVKIGRLKEATDYM--EQMVTD-GVQLDIVSYNTLINLYCKEGKLE-------- 258 (410)
Q Consensus 202 ----~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~-------- 258 (410)
.+.....|..+++ .+.+.++-.++...+ +...+. .+.+-..........+.+.....
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 1112222222222 111122222222111 110000 01111122233333444333211
Q ss_pred --HHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015246 259 --AAYLLLDEMEK-QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 335 (410)
Q Consensus 259 --~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (410)
.-+++.+.+.. .|.....-+.+.-+..+...|+-..|.++-.+.. -||...|..-+.+++..+++++-.++-.
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 11222222221 1222333456666777788899888888776654 5788889999999999999998777665
Q ss_pred hhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 336 SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 336 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
... .|..|.-.+.+|.+.|+.++|.+++-+.- | .. ....+|.+.|++.+|.++.-+
T Consensus 740 skk--sPIGy~PFVe~c~~~~n~~EA~KYiprv~--~---l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 740 SKK--SPIGYLPFVEACLKQGNKDEAKKYIPRVG--G---LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccC--CCCCchhHHHHHHhcccHHHHhhhhhccC--C---hH----HHHHHHHHhccHHHHHHHHHH
Confidence 443 47888999999999999999999988873 2 11 566788899999888876543
No 227
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.97 E-value=0.18 Score=42.35 Aligned_cols=281 Identities=12% Similarity=0.085 Sum_probs=135.7
Q ss_pred cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHH--HhcCChhHHHHHHHHHhcCCCCCChhHH--HHHHHHHhhcCchHH
Q 015246 44 NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCL--FQLGKPDEANRVFQDMICGDLTPCTATF--NIMLNGLCKNRYTDN 119 (410)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ 119 (410)
.|+-..|.++-.+-.+. +..|...+..++.+- .-.|+++.|.+-|+.|... |..... ..|.-..-+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 45556666555544322 222333444444332 3467777777777777642 222211 122222335666677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCcHHH--HHHHHHHH---HhccchhHHHHH
Q 015246 120 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG-HAPNAIT--YTTIMKCC---FRNRKYKLGLEI 193 (410)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~~~~~~a~~~ 193 (410)
|.++-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..- -..|+.+- .-.-+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 776666665542 2234566667777777777777777776654422 2222211 11122111 112234444444
Q ss_pred HHHHHHcCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-C
Q 015246 194 LSAMKRKGYTFDGF-GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-G 271 (410)
Q Consensus 194 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 271 (410)
-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+..+.|+ .+ ..|.....-+.+..-+++..+. .
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhcCCCcHHHHHHHHHHHHh
Confidence 4433333 33321 222334556666777777777766665433332 22 2233322223344334333221 1
Q ss_pred CCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHhhcc
Q 015246 272 FEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG-KDGKIDHAINVFESMEV 339 (410)
Q Consensus 272 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 339 (410)
++| +......+.++-...|++..|..--+...+ ..|....|..+.+.-. ..|+-.++...+.+...
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 122 334445555666666666666665555554 3555555655555433 33666666666655543
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.87 E-value=0.042 Score=38.74 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 137 VTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
.++..++.++++.|+.+....+++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~ 28 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSV 28 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 34455555555555555555555443
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.86 E-value=0.02 Score=40.32 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
|..++..++.++++.|+.+....+++..-. +..+... ..+. --......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345667777777777777777777755432 2211100 0000 1122345677777777777
Q ss_pred HHhhcCchHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 015246 110 GLCKNRYTDNALRMFRGLQK-HGFVPELVTYNILIKGLCK 148 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 148 (410)
+|+..+++..|+++++...+ -+++.+...|..|++-...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777777654 3455556677777665443
No 230
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.16 Score=39.70 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=13.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHH
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
|..-..+|....++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3333445555666666666555544
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.77 E-value=0.026 Score=39.03 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=23.6
Q ss_pred HHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 321 LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
....|+.+.|++.|.+.... .+..|+.-..++.-.|+.++|+.-+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444455555544443322 444445445555455555555555554443
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.73 E-value=0.11 Score=36.26 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=82.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHH
Q 015246 251 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDH 329 (410)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 329 (410)
..-.|..++..+++.+..... +..-++.++--....-+-+-..+.++.+-+. +..+ -.-...++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGki-FDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKI-FDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-S-GGG-S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhh-cCchhhcchHHHHHHHHHhcc---
Confidence 345678888888888877652 4555677766555555555555555555432 1111 0112233344443332
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 330 AINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 330 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
+.......+..+...|+-+.-.+++..+.+.+ .+++..+..+..+|.+.|+..++.+++.++-+.|+
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34445566778888999888888998887654 78888889999999999999999999999888775
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.72 E-value=0.022 Score=48.96 Aligned_cols=64 Identities=16% Similarity=0.050 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL----EAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|...|+.++|+..+++....
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567777888888888888888888887774 4442 34777888888888888888888877765
No 234
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.24 Score=40.03 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=57.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHH
Q 015246 216 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 295 (410)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 295 (410)
....|++.+|...|......... +......++.+|...|+.+.|..++..+...--.........-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34456666666666666554222 34445555666666666666666666554331111111111222333333333333
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhcc
Q 015246 296 RLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV 339 (410)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 339 (410)
..+-++.-.. +.|...-..+...+...|+.+.|.+.+-.+..
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333333331 22455555555666666666666655544443
No 235
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.69 E-value=0.0066 Score=33.59 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHH
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 384 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 384 (410)
.++..+..+|...|++++|+++|+++++.. |.|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 456777788888888888888888888763 44555555443
No 236
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.049 Score=45.77 Aligned_cols=97 Identities=15% Similarity=0.013 Sum_probs=63.2
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKG 145 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 145 (410)
..++..+.-++.+.+++..|++..+..+..+ ++|.-....-..++...|+++.|...|+++++.. +.|...-+.++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667777777888888888777777766 6677777777777778888888888888877752 2244444445444
Q ss_pred HHhcCCHH-HHHHHHHHHhh
Q 015246 146 LCKAGRLR-TARWILKELGD 164 (410)
Q Consensus 146 ~~~~~~~~-~a~~~~~~~~~ 164 (410)
-.+..... ...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 44444433 33666666644
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.25 Score=39.92 Aligned_cols=145 Identities=14% Similarity=0.053 Sum_probs=75.4
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
.......|++.+|...|+........ +...--.++++|...|+.+.|..++..+..............-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34455677777777777777665322 45555667777777777777777777765532222222222223333343333
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEG 255 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 255 (410)
.+...+-.++-.. +.|...-..+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.-.|
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333333322 33444555555666666666666665555544311 113333444444444444
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.64 E-value=0.012 Score=50.48 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---Cc---hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHH
Q 015246 308 DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQK 381 (410)
Q Consensus 308 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 381 (410)
+.+...++.+..+|...|++++|+..|++.... +. .+|..+..+|...|+.++|+..++++++.+ .+ .|.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~ 147 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFS 147 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHH
Confidence 445788999999999999999999999998766 22 248999999999999999999999999753 22 222
Q ss_pred HHHH--HHhhcCCHHHHHHHHHHHHHccCC
Q 015246 382 AVVD--GLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 382 ~l~~--~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
.+.. .+....+..+..++++..++.|..
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1111 112233445777788877777653
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.12 Score=42.35 Aligned_cols=151 Identities=10% Similarity=-0.018 Sum_probs=82.6
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHH
Q 015246 183 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI----VSYNTLINLYCKEGKLE 258 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 258 (410)
-.|+..+|-..++++++.- |.|...+...=.+|...|+.+.-...++++... -.++. ..-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3566666666666666552 556556665566666777776666666666543 12232 22223334455667777
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHccCChHHHHHHH
Q 015246 259 AAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD----SNLEAYNCIVDRLGKDGKIDHAINVF 334 (410)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (410)
+|.+.-++..+.+ +.|..........+.-.|++.++.++..+-... .. .-...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 7777776666654 335555555566666667777766665543321 11 00112222333344456677777776
Q ss_pred Hhh
Q 015246 335 ESM 337 (410)
Q Consensus 335 ~~~ 337 (410)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 643
No 240
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.62 E-value=0.12 Score=42.93 Aligned_cols=223 Identities=9% Similarity=0.003 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHHHHhhC--CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc--CCCCC---hhhHHHHHHHHHHc
Q 015246 147 CKAGRLRTARWILKELGDS--GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK--GYTFD---GFGYCTVIAAFVKI 219 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~ 219 (410)
....+.++++..+.+.... +......++..+..+....|.+++++..--.-++. ..... -..|..+.+++.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555432 11112334445555566666666554432221111 00111 11233333333333
Q ss_pred CCHHHHHHHHHHHHHc-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CchHHHHHHHHHHHhcC
Q 015246 220 GRLKEATDYMEQMVTD-GVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-----CDKYTHTILIDGLCKAG 290 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~ 290 (410)
-++.+++.+-..-... |..|. -.....+..++...+.++++++.|+...+.... ....++..+...|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 3334444333322221 11111 112233444555556666666666665432111 11234555666666666
Q ss_pred ChhHHHHHHHHHHhc----CCCCCH-----HHHHHHHHHHHccCChHHHHHHHHhhccC-----Cch----hHHHHHHHH
Q 015246 291 NIKGARLHLEYMNKI----GFDSNL-----EAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSF----TYSSMVHNL 352 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~----~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~----~~~~l~~~~ 352 (410)
++++|..+..+..+. ++..-. .....+.-++...|+...|.+.-++..+. |.. ....+.+.|
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 666666655544321 111111 11222333445555555555555544332 222 223344455
Q ss_pred HhcCChhhHHHHHHHHH
Q 015246 353 CKAKRLPSASKLLLSCL 369 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~ 369 (410)
...|+.+.|..-|+.+.
T Consensus 257 R~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 257 RSRGDLERAFRRYEQAM 273 (518)
T ss_pred HhcccHhHHHHHHHHHH
Confidence 55566666555555554
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.11 Score=42.68 Aligned_cols=153 Identities=13% Similarity=0.044 Sum_probs=78.5
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh----HHHHHHHHHhhcCc
Q 015246 41 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA----TFNIMLNGLCKNRY 116 (410)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~ 116 (410)
....|+..+|-..++++.+. .|.|..++...-++|.-.|+.+.-...++++...- .++.. ....+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 34556666666666666654 44455555555566666666666666666655431 22222 22233334445666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---CcHHHHHHHHHHHHhccchhHHHHH
Q 015246 117 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA---PNAITYTTIMKCCFRNRKYKLGLEI 193 (410)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 193 (410)
+++|.+.-++..+.+. .|...-.++...+-..|++.++.+...+-...=-. .-..-|=...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 6666666666665532 25555555666666666666666655543221000 0011111222333444666666666
Q ss_pred HHH
Q 015246 194 LSA 196 (410)
Q Consensus 194 ~~~ 196 (410)
|+.
T Consensus 270 yD~ 272 (491)
T KOG2610|consen 270 YDR 272 (491)
T ss_pred HHH
Confidence 654
No 242
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.59 E-value=0.34 Score=40.31 Aligned_cols=165 Identities=14% Similarity=0.129 Sum_probs=85.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCChhhH
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRK-GYTF---DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-----VQLDIVSY 244 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~ 244 (410)
|..+.+++.+..++.+++.+-..-... |..+ .......+..++...+.++++.+.|+...+.. ......++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 444444444445555555544443322 1111 11223345555666666777777776665431 11123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCc-----hHHHHHHHHHHHhcCChhHHHHHHHHHHh----cCCCCC-
Q 015246 245 NTLINLYCKEGKLEAAYLLLDEMEKQ----GFECD-----KYTHTILIDGLCKAGNIKGARLHLEYMNK----IGFDSN- 310 (410)
Q Consensus 245 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~- 310 (410)
..+...|.+..|+++|.-+..+..+. ++..- ......+..++...|+..+|.+..++..+ .|-.+.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 66777777777777776655544321 21111 11223344556677777777777766543 232221
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 311 LEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
......+.+.|...|+.+.|+.-++...
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2234456677777788777777776544
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.55 E-value=0.071 Score=42.47 Aligned_cols=89 Identities=16% Similarity=0.151 Sum_probs=41.5
Q ss_pred HhccchhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCH
Q 015246 182 FRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ--LDIVSYNTLINLYCKEGKL 257 (410)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 257 (410)
.+.|++..|...|...++.. -......+-.|..++...|++++|..+|..+.+.-.. .-+..+-.+..+..+.|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 34455555555555555442 0112223334555555555555555555555543111 1123444444455555555
Q ss_pred HHHHHHHHHHHhC
Q 015246 258 EAAYLLLDEMEKQ 270 (410)
Q Consensus 258 ~~a~~~~~~~~~~ 270 (410)
++|...|+++.+.
T Consensus 232 d~A~atl~qv~k~ 244 (262)
T COG1729 232 DEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.54 E-value=0.12 Score=45.54 Aligned_cols=105 Identities=13% Similarity=0.101 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 148 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (410)
.+.++..+-+.|-++.|+++..+ +. .-.....+.|+++.|.++.++. ++...|..|.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 44555555555555555554221 11 1122333445555554433221 244455555555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (410)
.|+++-|.+.|.+..+ +..|+-.|.-.|+.+...++.+.....
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5555555555554432 334444444555555444444444443
No 245
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.52 E-value=0.0067 Score=33.57 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 378 SAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
.++..+..+|.+.|++++|.++++++.+..|++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 467889999999999999999999999998875
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.51 E-value=0.18 Score=36.10 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=27.4
Q ss_pred HHhccchhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 015246 181 CFRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236 (410)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (410)
..+.|++++|.+.|+.+...- -+-...+-..++.+|.+.++++.|...+++.++.+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344555555555555555441 01122333444555555555555555555555543
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.49 E-value=0.31 Score=38.62 Aligned_cols=53 Identities=19% Similarity=0.012 Sum_probs=34.1
Q ss_pred HHHHHHccCChHHHHHHHHhhccC------CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVK------DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
+..-|.+.|.+-.|..-++++.+. ....+-.+..+|...|-.++|...-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 445667777777777777776655 23345556667777777777766655543
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.49 E-value=0.14 Score=35.64 Aligned_cols=89 Identities=17% Similarity=0.083 Sum_probs=40.5
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh---HHHHHHHHHhhcCc
Q 015246 40 GATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA---TFNIMLNGLCKNRY 116 (410)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 116 (410)
+++..|+.+.|++.|.+.... .|-....||.-..++.-.|+.++|++=+++..+..-+.+.. .|.--...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344455555555555555443 12244455555555555555555555555544431111211 22222234444555
Q ss_pred hHHHHHHHHHHHh
Q 015246 117 TDNALRMFRGLQK 129 (410)
Q Consensus 117 ~~~a~~~~~~~~~ 129 (410)
.+.|..-|+..-+
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 5555555544433
No 249
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.46 E-value=0.22 Score=36.66 Aligned_cols=138 Identities=15% Similarity=0.126 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh-HHH--H
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA-TFN--I 106 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~--~ 106 (410)
...|..-+. +++.+..++|+.-|..+.+.|...= ..............|+...|...|+++-.....|-.. -.. .
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444443 3456667778888888777654311 1122233445567778888888888776543223222 111 1
Q ss_pred HHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 015246 107 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 169 (410)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (410)
-.-.+...|.++......+.+...+.+.-...-..|.-+-.+.|++..|.+.|..+......|
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 122455677777777777777665554445555666667777888888888888776643333
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.44 E-value=0.12 Score=45.47 Aligned_cols=158 Identities=17% Similarity=0.171 Sum_probs=99.3
Q ss_pred HHHHhcCChhHHHHHHH--HHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 74 HCLFQLGKPDEANRVFQ--DMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 74 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
....-.++++.+.+... ++. ..+ +....+.++..+.+.|..+.|+++...-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 34455678888766665 222 111 24557778888888888888887654322 22456677888
Q ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 015246 152 LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 231 (410)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 231 (410)
++.|.++.++. ++...|..|.......|+++.|++.|.+..+ +..++-.|...|+.+...++.+.
T Consensus 334 L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 88887776432 4677899999999999999998888876542 45566777888888888887777
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 232 MVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
....| -++....++.-.|+.++..+++.+.
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 66553 2455566667778888887776553
No 251
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.41 E-value=0.54 Score=40.51 Aligned_cols=223 Identities=11% Similarity=0.055 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHhhCCCCC----cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHH-------HHHHHHH--
Q 015246 151 RLRTARWILKELGDSGHAP----NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYC-------TVIAAFV-- 217 (410)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~-- 217 (410)
+.+++..+.+.+....+.+ -..++..++....+.++...|.+.+.-+.-.. |+...-. .+....+
T Consensus 274 ~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~D 351 (549)
T PF07079_consen 274 DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCED 351 (549)
T ss_pred ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcc
Confidence 4555555555444332111 23456677777777777777777777665442 2222111 1111112
Q ss_pred --HcCCHHHHHHHHHHHHHcCCCCChhhHHHHH---HHHHhcCC-HHHHHHHHHHHHhCCCCCchHH----HHHHHHHHH
Q 015246 218 --KIGRLKEATDYMEQMVTDGVQLDIVSYNTLI---NLYCKEGK-LEAAYLLLDEMEKQGFECDKYT----HTILIDGLC 287 (410)
Q Consensus 218 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~ 287 (410)
...+...=..+++.+...++. .......++ .-+-+.|. -++|+.+++.+.+-. .-|... +..+=.+|.
T Consensus 352 D~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~ 429 (549)
T PF07079_consen 352 DESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYK 429 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 111223334444444443221 111122222 23444554 777888888776542 123322 222223333
Q ss_pred h---cCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHH--HHccCChHHHHHH--HHhhccCCchhHHHHHHHHHhcC
Q 015246 288 K---AGNIKGARLHLEYMNKIGFDSN----LEAYNCIVDR--LGKDGKIDHAINV--FESMEVKDSFTYSSMVHNLCKAK 356 (410)
Q Consensus 288 ~---~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~--~~~~~~~~~~~~~~l~~~~~~~~ 356 (410)
. ...+..-..+-+-+.+.|++|- ...-+.+.++ +...|++.++.-. |-.-..+++.+|..++-++...+
T Consensus 430 qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k 509 (549)
T PF07079_consen 430 QALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENK 509 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 2 2344455555555666677663 3444555443 4567888887643 33334447788888888888888
Q ss_pred ChhhHHHHHHHHHHcCCCCcHhhHHH
Q 015246 357 RLPSASKLLLSCLKSGVRILKSAQKA 382 (410)
Q Consensus 357 ~~~~A~~~~~~~~~~~~~~~~~~~~~ 382 (410)
++++|...+..+ ||+..++..
T Consensus 510 ~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 510 RYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred hHHHHHHHHHhC-----CCchhhHHH
Confidence 888888888775 666655543
No 252
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.26 E-value=0.015 Score=29.79 Aligned_cols=32 Identities=16% Similarity=-0.049 Sum_probs=21.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 379 AQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 379 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
.+..+...+...|++++|++.+++..+..|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566667777777777777777777776654
No 253
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.26 E-value=0.23 Score=34.70 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=72.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANR 87 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 87 (410)
-.|.+++..++..+.... .+..-+|-+|......-+-+-..++++.+-+. -|.. ..|+......
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis----------~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDIS----------KCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GG----------G-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCch----------hhcchHHHHH
Confidence 457777788888777764 34555565565555544444444555444321 1211 1222222222
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 015246 88 VFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 167 (410)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 167 (410)
.+-.+ ..+.......+..+...|.-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22221 122334445566777777777777777777653 345777777777888888888888888888877765
Q ss_pred C
Q 015246 168 A 168 (410)
Q Consensus 168 ~ 168 (410)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 3
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=96.22 E-value=0.73 Score=40.12 Aligned_cols=79 Identities=13% Similarity=0.011 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHH
Q 015246 49 CSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ 128 (410)
Q Consensus 49 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (410)
+|.++-+...+.+. .|..+...+..+....++++.|..+|++....+ +....+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34444444444432 244444445554455555555555555555443 3333444444444444555555555555544
Q ss_pred h
Q 015246 129 K 129 (410)
Q Consensus 129 ~ 129 (410)
+
T Consensus 400 r 400 (458)
T PRK11906 400 Q 400 (458)
T ss_pred c
Confidence 4
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.21 E-value=0.6 Score=40.86 Aligned_cols=52 Identities=15% Similarity=0.228 Sum_probs=23.9
Q ss_pred HHHHHHccCChHHHHHHHHhhccC-----CchhHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 368 (410)
+..++.+.|+.++|.+.++++.+. +......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 444444445555555544444322 1223444445555555555555555444
No 256
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.20 E-value=0.3 Score=35.46 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=18.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 253 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (410)
++..+...+.......+++.+...+. .+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 33444444444445555554444432 344444444444443
No 257
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.18 E-value=0.64 Score=39.09 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++...+-.. . -++.-|..++.+|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 333444444455444444433331 23444455555555555555544433221 0 1223444555555555
Q ss_pred CChhHHHHHHHH
Q 015246 290 GNIKGARLHLEY 301 (410)
Q Consensus 290 ~~~~~a~~~~~~ 301 (410)
|+..+|..+..+
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 555555444433
No 258
>PRK11906 transcriptional regulator; Provisional
Probab=96.01 E-value=0.25 Score=42.90 Aligned_cols=157 Identities=13% Similarity=0.076 Sum_probs=100.7
Q ss_pred hhH--HHHHHHHHhc-----CCHHHHHHHHHHHHhC-CCCCc-hHHHHHHHHHHHhc---------CChhHHHHHHHHHH
Q 015246 242 VSY--NTLINLYCKE-----GKLEAAYLLLDEMEKQ-GFECD-KYTHTILIDGLCKA---------GNIKGARLHLEYMN 303 (410)
Q Consensus 242 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~ 303 (410)
..| ..++.+.... ...+.|..+|.+.... ...|+ ...|..+..++... ....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554432 2356788888888822 23444 33444444433221 23446677777777
Q ss_pred hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH---
Q 015246 304 KIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK--- 377 (410)
Q Consensus 304 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--- 377 (410)
+.+ +.|+.....+..+....++++.|...|++.... ...+|......+.-.|+.++|.+.+++.++. .|..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHH
Confidence 764 557777777888778888899999999988766 4456777777778899999999999998755 4432
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 378 SAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
......+..|+.. ..++|++++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 2333333345544 47777777654
No 259
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.95 E-value=0.77 Score=37.98 Aligned_cols=123 Identities=11% Similarity=0.088 Sum_probs=58.4
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcC-ChhhHHHHHHHHHHc----C----CCCC-----
Q 015246 7 CQFVSFDAGYTILNRMREAGISPDVVTYNSL-------IAGATRNS-LLSCSLDLLDEMLEM----G----IPPD----- 65 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 65 (410)
.++|+++.|...+.+........++.....+ .......+ +++.|..++++..+. + ..|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4678888888888877754311122221111 22223344 666666666554432 0 1112
Q ss_pred hHhHHHHHHHHHhcCChh---HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 66 VWSYNSLMHCLFQLGKPD---EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
..++..++.++...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 123444555555544433 3344444443221 222334434445555556666666666666554
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.94 E-value=0.78 Score=37.98 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhccchh---HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 173 TYTTIMKCCFRNRKYK---LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
+...++.++...+..+ +|..+++.+.... +..+..+..-+..+.+.++.+.+.+.+..|... +......+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 3444555555555443 3444444443332 223344445555555566777777777777665 2212333444443
Q ss_pred HHHh--cCCHHHHHHHHHHHHhC
Q 015246 250 LYCK--EGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 250 ~~~~--~~~~~~a~~~~~~~~~~ 270 (410)
.+.. ......+...+..+...
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHH
Confidence 3311 12233444555444433
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.90 E-value=0.63 Score=36.58 Aligned_cols=206 Identities=10% Similarity=0.038 Sum_probs=103.5
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 182 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (410)
.|..-..+|...+++++|...+.+..+. ...+...| ...+.++.|.-+.+++... +--...|..-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455677777888887777766532 12122222 2233345555555555542 112334455556667
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---C--CCCChhhHHHHHHHHHhcCCH
Q 015246 183 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD---G--VQLDIVSYNTLINLYCKEGKL 257 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~ 257 (410)
..|.++.|-..+++.-+. ...-++++|+++|++...- + ...-...+..+...+++...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 777777666666554432 1223344444444443321 0 000112233444456666666
Q ss_pred HHHHHHHHHHHhC----CCCCch-HHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHccCChHH
Q 015246 258 EAAYLLLDEMEKQ----GFECDK-YTHTILIDGLCKAGNIKGARLHLEYMNKIG---FDSNLEAYNCIVDRLGKDGKIDH 329 (410)
Q Consensus 258 ~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~ 329 (410)
++|-..+.+-... .-.++. ..|...|..+....++..|...++.-.+.+ -+-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6665544432211 011121 235555556666778888888887744321 122345556666665 4567777
Q ss_pred HHHHHH
Q 015246 330 AINVFE 335 (410)
Q Consensus 330 A~~~~~ 335 (410)
+.+++.
T Consensus 246 ~~kvl~ 251 (308)
T KOG1585|consen 246 IKKVLS 251 (308)
T ss_pred HHHHHc
Confidence 666553
No 262
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.90 E-value=1.2 Score=39.88 Aligned_cols=382 Identities=11% Similarity=0.033 Sum_probs=221.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 16 YTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
.+.|+..... ..+...|..++.--......+.+...+..+... .|.-.--|......=.+.|..+.+.++|++-+.
T Consensus 32 ~~~we~~~~~--~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~- 107 (577)
T KOG1258|consen 32 LDYWEILSND--SLDFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ- 107 (577)
T ss_pred hhHhhccccc--hhcccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-
Confidence 3444444432 345667777776655556667778888888754 332334566667777789999999999999875
Q ss_pred CCCCChhHHHHHHHHHh-hcCchHHHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHH
Q 015246 96 DLTPCTATFNIMLNGLC-KNRYTDNALRMFRGLQKH-GFV-PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 172 (410)
Q Consensus 96 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (410)
+++.+...|...+..+. ..|+.+.....|+..... |.. .+...|...+..-...+++.....+++++++.. ..
T Consensus 108 aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~ 183 (577)
T KOG1258|consen 108 AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LH 183 (577)
T ss_pred hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hh
Confidence 45777788877665544 467788888888887763 221 245678888888888999999999999998742 12
Q ss_pred HHHHHHHHHH----h-----ccchhHHHHHHHHHHH--------------------cCCCCCh---hhHHHHHHH-----
Q 015246 173 TYTTIMKCCF----R-----NRKYKLGLEILSAMKR--------------------KGYTFDG---FGYCTVIAA----- 215 (410)
Q Consensus 173 ~~~~l~~~~~----~-----~~~~~~a~~~~~~~~~--------------------~~~~~~~---~~~~~l~~~----- 215 (410)
.++....-|. . ....+++.++-..... .+ .|.. ...+.+...
T Consensus 184 ~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~-~~s~~l~~~~~~l~~~~~~~~ 262 (577)
T KOG1258|consen 184 QLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDST-DPSKSLTEEKTILKRIVSIHE 262 (577)
T ss_pred HhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhcc-CccchhhHHHHHHHHHHHHHH
Confidence 2222222211 1 1223333333222221 01 1110 011111111
Q ss_pred --HHHcCCHHHHHHHHHHHHHc---CC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 015246 216 --FVKIGRLKEATDYMEQMVTD---GV----QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 286 (410)
Q Consensus 216 --~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (410)
+............++.-... .+ +++..+|...+.--...|+.+.+.-+++++.-.- ..-...|-..++-.
T Consensus 263 ~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m 341 (577)
T KOG1258|consen 263 KVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWM 341 (577)
T ss_pred HHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHH
Confidence 11112222233333333322 12 2245678888888889999999999999886431 11233455555556
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhHH-
Q 015246 287 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSAS- 362 (410)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~- 362 (410)
...|+.+-+..++....+.-.+..+.+-..-..-.-..|+++.|..+++.+...-+ ..-..-+....+.|+.+.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 342 ESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 66699999988888777653332222222222233456899999999999887622 12222234456678877777
Q ss_pred --HHHHHHHHcCCCCcHhh----HHHHHHH-HhhcCCHHHHHHHHHHHHHccCC
Q 015246 363 --KLLLSCLKSGVRILKSA----QKAVVDG-LRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 363 --~~~~~~~~~~~~~~~~~----~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
+++....+ | .-+..+ +....+. +.-.++.+.|..++.++....++
T Consensus 422 ~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~ 473 (577)
T KOG1258|consen 422 KNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPD 473 (577)
T ss_pred HHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCc
Confidence 33333322 2 222222 2222222 44578899999999888766554
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.86 E-value=0.021 Score=29.31 Aligned_cols=31 Identities=13% Similarity=-0.049 Sum_probs=18.0
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 379 AQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 379 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
+|..++.+|...|++++|...|+++.+.+|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555556666666666666666666665554
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.78 E-value=0.025 Score=29.57 Aligned_cols=23 Identities=4% Similarity=-0.061 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHH
Q 015246 345 YSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 345 ~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555555
No 265
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.70 E-value=0.014 Score=30.05 Aligned_cols=32 Identities=13% Similarity=0.001 Sum_probs=25.4
Q ss_pred HHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHH
Q 015246 365 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAK 397 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 397 (410)
|+++++.. |.+...|..+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666664 667888999999999999998886
No 266
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.67 E-value=0.85 Score=36.37 Aligned_cols=221 Identities=17% Similarity=0.038 Sum_probs=129.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHc-CCCCChhhHHHHHHHHHHcCCHHHHH
Q 015246 149 AGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTFDGFGYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 226 (410)
.+....+...+.......... ....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 345555555555555532221 2455666666777777777777777776652 22444555666666667777777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLIN-LYCKEGKLEAAYLLLDEMEKQGF--ECDKYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777777643322 122222223 57777778888877777754221 0122333333344556677777777777777
Q ss_pred hcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 304 KIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 304 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
... .. ....+..+...+...++++.|...+.......+ ..+......+...+..+++...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 642 22 355566666667777777777777776665532 33444444444555567777777666644
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.53 E-value=0.61 Score=33.82 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=5.3
Q ss_pred CChhHHHHHHHHHh
Q 015246 80 GKPDEANRVFQDMI 93 (410)
Q Consensus 80 ~~~~~a~~~~~~~~ 93 (410)
+.+.....+++.+.
T Consensus 21 ~~~~~l~~yLe~~~ 34 (140)
T smart00299 21 NLLEELIPYLESAL 34 (140)
T ss_pred CcHHHHHHHHHHHH
Confidence 33333333333333
No 268
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.51 E-value=0.1 Score=39.39 Aligned_cols=88 Identities=17% Similarity=0.065 Sum_probs=60.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHH---HHHHHhc
Q 015246 284 DGLCKAGNIKGARLHLEYMNKIGFDSNLE-----AYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSM---VHNLCKA 355 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~ 355 (410)
.-+...|++++|..-|...+.. +++... .|..-..++.+.+.++.|+.-.......++..-.++ ..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 3467889999999999888875 333222 233334466778888888877777776655444444 3467777
Q ss_pred CChhhHHHHHHHHHHcC
Q 015246 356 KRLPSASKLLLSCLKSG 372 (410)
Q Consensus 356 ~~~~~A~~~~~~~~~~~ 372 (410)
..+++|++-|++.++..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888888663
No 269
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.25 E-value=0.25 Score=39.59 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhH
Q 015246 29 PDVVTYNSLIAGATR-----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTAT 103 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (410)
.|..+|...+..+.. .+.++-....+..|.+.|+..|..+|+.|+..+-+..- .|...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv- 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV- 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH-
Confidence 345555555555443 23444455556666666666666666666655433211 11100
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRL 152 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 152 (410)
+....--| -.+-+-++.++++|...|+.||..+-..|++++.+.+-.
T Consensus 128 fQ~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 00000011 112345777888888888888888888888888776653
No 270
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.23 E-value=0.88 Score=33.83 Aligned_cols=32 Identities=19% Similarity=0.509 Sum_probs=15.6
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLE 258 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 258 (410)
+.++.+...+++|+...+..++..+.+.|++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 33344444455555555555555555555433
No 271
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.22 E-value=1.8 Score=37.43 Aligned_cols=129 Identities=13% Similarity=0.198 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 251 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (410)
.|...+....+..-.+.|..+|-++.+.+ ..++...+++++..++ .|+..-|..+|+.-... .+.+..-....+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHHHHH
Confidence 44455555556666677777777777666 4556666666666554 46666777777665553 222233334455556
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 252 CKEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
...++-+.|..+|+...+. +..+ ...|..++.--..-|+...+..+=+++.+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6667777777777644332 1111 34566666666666776666666666655
No 272
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.20 E-value=0.045 Score=27.70 Aligned_cols=31 Identities=10% Similarity=-0.083 Sum_probs=21.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 380 QKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 380 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
+..++.++.+.|++++|.+.|+++...-|+|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3455666667777777777777777766654
No 273
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.15 E-value=0.33 Score=39.42 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=54.2
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCCcHHHHHH
Q 015246 102 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD-----SGHAPNAITYTT 176 (410)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 176 (410)
.++..++..+...++++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 455666777777777777777777777663 33667777777777777777777777776644 467777776666
Q ss_pred HHHH
Q 015246 177 IMKC 180 (410)
Q Consensus 177 l~~~ 180 (410)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6555
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.10 E-value=1.1 Score=34.03 Aligned_cols=145 Identities=14% Similarity=0.034 Sum_probs=77.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHH--HHHHHHHhcCChhHHHHHHHHHH
Q 015246 226 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHT--ILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
++.++.-.......-...|..++.... .+.+ +.......+...+.......+. .+...+...+++++|...++...
T Consensus 39 W~ywq~~q~~q~~~AS~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l 116 (207)
T COG2976 39 WRYWQSHQVEQAQEASAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQAL 116 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444444333222223444555555443 2333 4444445555442221222222 23445667778888887777766
Q ss_pred hcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHhhccC--CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 304 KIGFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 304 ~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
......+ ..+--.|.......|.+|+|+..++..... .+.....-.+.+...|+.++|...|++.+..+
T Consensus 117 ~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 117 AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 5311111 111223445666777788888777777666 33334455667777788888888887777664
No 275
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=3 Score=39.18 Aligned_cols=52 Identities=6% Similarity=0.143 Sum_probs=33.7
Q ss_pred HHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 368 (410)
++..+....+++.+..+.+...+.++..|..++..+++.+..+.-.+...+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 4455566666777777777666667777777777777777655544444443
No 276
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.07 E-value=0.28 Score=39.27 Aligned_cols=88 Identities=23% Similarity=0.303 Sum_probs=55.7
Q ss_pred CCChhhHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----------------CHHHHH
Q 015246 203 TFDGFGYCTVIAAFVK-----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG----------------KLEAAY 261 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~a~ 261 (410)
..|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+-. +-+=+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3455566666665543 3567777777888888888888888888887764432 112245
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 015246 262 LLLDEMEKQGFECDKYTHTILIDGLCKAG 290 (410)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (410)
+++++|...|+.||..+-..++.++.+.+
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 55566666666666665555565555544
No 277
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.03 E-value=0.28 Score=39.83 Aligned_cols=82 Identities=16% Similarity=0.211 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhc-----CCCCCChhHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMIC-----GDLTPCTATF 104 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 104 (410)
-..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 35678889999999999999999999998874 34788899999999999999999999988765 4888888888
Q ss_pred HHHHHHHh
Q 015246 105 NIMLNGLC 112 (410)
Q Consensus 105 ~~l~~~~~ 112 (410)
........
T Consensus 231 ~~y~~~~~ 238 (280)
T COG3629 231 ALYEEILR 238 (280)
T ss_pred HHHHHHhc
Confidence 87777744
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.99 E-value=1 Score=33.34 Aligned_cols=136 Identities=12% Similarity=0.102 Sum_probs=97.6
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChh-HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHH-HHHH-
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTA-TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV-TYNI- 141 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~- 141 (410)
+...|...+. +...+..++|+.-|..+.+.|...-+. ..-.........|+...|...|+++-.....|-.. -..-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4556666655 567788999999999999876432222 12223445678999999999999998764444433 1111
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC
Q 015246 142 -LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 201 (410)
Q Consensus 142 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (410)
-.-.+...|.++.+....+.+...+-+.....-..|.-+..+.|++.+|.+.|..+....
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 123467899999999999888776655556666778788899999999999999988753
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.91 E-value=0.81 Score=34.74 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc--HHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDSGHAPN--AITYTTIMKCCFRNRKYKLGLEILSAMKR 199 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (410)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666655433322 23344555555666666666665555543
No 280
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.76 E-value=3 Score=37.55 Aligned_cols=161 Identities=13% Similarity=0.139 Sum_probs=81.1
Q ss_pred HHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCcHHHH
Q 015246 105 NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV------TYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITY 174 (410)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 174 (410)
..++....-.|+-+.+++.+.+..+.+---.+. .|+..+..++. ..+.+.+.++++.+... -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 345555555666666666666655432111111 22222322222 34456666777666653 2444444
Q ss_pred HHH-HHHHHhccchhHHHHHHHHHHHcC--C-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHH-H
Q 015246 175 TTI-MKCCFRNRKYKLGLEILSAMKRKG--Y-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI-N 249 (410)
Q Consensus 175 ~~l-~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~ 249 (410)
... .+.+...|++++|++.|+...... . ......+-.+..++.-..++++|...+..+.+.+ .-+...|.-+. .
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 332 345556677777777777544321 0 1122334445556666677777777777776642 11223333222 2
Q ss_pred HHHhcCCH-------HHHHHHHHHHH
Q 015246 250 LYCKEGKL-------EAAYLLLDEME 268 (410)
Q Consensus 250 ~~~~~~~~-------~~a~~~~~~~~ 268 (410)
++...++. ++|.++|.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 34445555 66666666653
No 281
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.72 E-value=1.7 Score=34.54 Aligned_cols=117 Identities=19% Similarity=0.099 Sum_probs=53.1
Q ss_pred CChhhHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHhcC-CCCCChhHHHHHHHHHhhcCchHHHHH
Q 015246 45 SLLSCSLDLLDEMLEMGIP-PDVWSYNSLMHCLFQLGKPDEANRVFQDMICG-DLTPCTATFNIMLNGLCKNRYTDNALR 122 (410)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (410)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 02344455555555566666666555555431 113334444444455555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHH
Q 015246 123 MFRGLQKHGFVPELVTYNILIK-GLCKAGRLRTARWILKEL 162 (410)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~ 162 (410)
.+.........+ ......... .+...|+++.+...+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555432221 111111122 444555555555555554
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.68 E-value=0.083 Score=27.56 Aligned_cols=25 Identities=16% Similarity=0.060 Sum_probs=19.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 379 AQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 379 ~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
++..+...|.+.|++++|.+++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567888888888888888888883
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.58 E-value=0.11 Score=26.50 Aligned_cols=31 Identities=16% Similarity=-0.083 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 379 AQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 379 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
+|..+...|...|++++|.+.|++..+.+++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3445555666666666666666666555543
No 284
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.34 E-value=5.9 Score=39.05 Aligned_cols=107 Identities=20% Similarity=0.149 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchh---HHHHHHHHHhc
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFT---YSSMVHNLCKA 355 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~ 355 (410)
|......+...+.+++|.-.|+..-+ ....+.+|..+|+|.+|..+-.++...-... -..|+.-+...
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHc
Confidence 33344444555666666666655432 1234566777777777777777666552222 25566667777
Q ss_pred CChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 356 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 356 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
+++-+|-++..+... .| ...+..|++.-.|++|.++...
T Consensus 1013 ~kh~eAa~il~e~~s---d~-----~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLS---DP-----EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred ccchhHHHHHHHHhc---CH-----HHHHHHHhhHhHHHHHHHHHHh
Confidence 777777777766642 11 1222334444455555555443
No 285
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.33 E-value=0.68 Score=35.13 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC--hhHHHHHHHHHhhcCchHHHHHHHHHHHh
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC--TATFNIMLNGLCKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (410)
.+..+...|.+.|+.+.|.+.|.++......+. ...+-.+++.....+++..+...+.+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666655432222 33445555666666666666666555543
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.31 E-value=3.5 Score=36.41 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFD-SNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
-..+..++.+.|+.++|.+.++++.+.... .+..+...|+.++...+.+.++..++.+..
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 344555556667777777777766653211 123355566666777777777766666654
No 287
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=94.24 E-value=4.9 Score=37.72 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=45.5
Q ss_pred HHHHHHHHccCChHHHHHHHHhhccCCc--hhHHHHH-HHHHhcCC-----------hhhHHHHHHHHHHcC-----CCC
Q 015246 315 NCIVDRLGKDGKIDHAINVFESMEVKDS--FTYSSMV-HNLCKAKR-----------LPSASKLLLSCLKSG-----VRI 375 (410)
Q Consensus 315 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~-~~~~~~~~-----------~~~A~~~~~~~~~~~-----~~~ 375 (410)
...+.-+...|++++|..+|..+.+.+. ...+.++ .+...... ...|..+.+.....+ +.+
T Consensus 418 ~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~ 497 (613)
T PF04097_consen 418 EQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSR 497 (613)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-H
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccH
Confidence 3344556778888888888887765522 2233333 22222222 123344444333211 111
Q ss_pred -cHhhHHHHHHH-----HhhcCCHHHHHHHHHHHH
Q 015246 376 -LKSAQKAVVDG-----LRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 376 -~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~ 404 (410)
...|+..|+.. +.+.|++++|.+.++++.
T Consensus 498 ~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 498 KNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 23455544432 578999999999888763
No 288
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.12 E-value=2.1 Score=33.14 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 342 SFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 342 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
..+|..+..-+...|+.++|..+|+-.+..+
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3466667777777777777777777776543
No 289
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=94.05 E-value=0.32 Score=31.80 Aligned_cols=49 Identities=12% Similarity=-0.083 Sum_probs=39.8
Q ss_pred ChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 357 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 357 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
+.-++.+-++.+...++-|++....+.+++|.+.+|+.-|.++++-++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4456777777777778888888888888899999999999988887763
No 290
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.04 E-value=6.8 Score=38.66 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
|.+....+.....+++|.-.|+..-+ ....+.+|..+|++.+|..+..++.... .--..+-..|+.-+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHH
Confidence 33344444555666666666554432 1234556677777777777766554310 0011122556666777
Q ss_pred cCChHHHHHHHHhhccC
Q 015246 324 DGKIDHAINVFESMEVK 340 (410)
Q Consensus 324 ~g~~~~A~~~~~~~~~~ 340 (410)
.+++-+|-++..+....
T Consensus 1012 ~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred cccchhHHHHHHHHhcC
Confidence 77777777777666554
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.90 E-value=5.3 Score=36.95 Aligned_cols=276 Identities=14% Similarity=0.098 Sum_probs=157.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHH--HH-HHhcCCHHHHHHHHHHHhh-------CCCCCcHHHHHHHHHHHHhcc-
Q 015246 117 TDNALRMFRGLQKHGFVPELVTYNILI--KG-LCKAGRLRTARWILKELGD-------SGHAPNAITYTTIMKCCFRNR- 185 (410)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~- 185 (410)
...|.++++...+.|.. ........+ .. +....+++.|+..|+.+.. .+ .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 46788888888877532 112211122 22 4466789999999988866 44 2234455666666543
Q ss_pred ----chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH----hcCC
Q 015246 186 ----KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYC----KEGK 256 (410)
Q Consensus 186 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 256 (410)
+...|..++.+.-+.| .|+...+...+..... ..+...|.++|......|.. ..+-.+..+|. ...+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 6677999999888887 5555443333322222 24678999999999887643 22223333222 2347
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH---Hc----cCChHH
Q 015246 257 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL---GK----DGKIDH 329 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~ 329 (410)
...|..++.+..+.| .|....-...+..+.. +++..+...+..+.+.|..-....-..+.... .. ..+...
T Consensus 380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 888999999998887 3332222223333333 77777777666666554332111111111111 11 124555
Q ss_pred HHHHHHhhccC-CchhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhh----cCCHHHHHHHH
Q 015246 330 AINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQ 400 (410)
Q Consensus 330 A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 400 (410)
+...+.+.... +......+...|.. ..+++.|...|......+ ......+...+.. .. ...|.+.+
T Consensus 458 ~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~~a~~~~ 532 (552)
T KOG1550|consen 458 AFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LHLAKRYY 532 (552)
T ss_pred HHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hHHHHHHH
Confidence 66666665555 66666666665544 344777888888777654 3444444444322 22 67888888
Q ss_pred HHHHHcc
Q 015246 401 SKIRMAK 407 (410)
Q Consensus 401 ~~~~~~~ 407 (410)
.+..+.+
T Consensus 533 ~~~~~~~ 539 (552)
T KOG1550|consen 533 DQASEED 539 (552)
T ss_pred HHHHhcC
Confidence 7776644
No 292
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=5.9 Score=37.42 Aligned_cols=140 Identities=15% Similarity=0.124 Sum_probs=87.9
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
-+.+.|++++|...+-+-... +.|+ .+|.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.+.
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 467789999999888776642 1222 2456666777777888889999998875 66667789999999999888
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
-.+..+... .|.- ..-....+..+.+.+-.++|..+-..... +......+ +-..+++++|++.+..+
T Consensus 450 L~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 877776554 2211 11123445566666666666655444332 22222222 33455666666665544
No 293
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=1.5 Score=36.02 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=53.1
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHH
Q 015246 203 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG---VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTH 279 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 279 (410)
+....+...++..-....+++.++..+-++...- ..|+... ...++.+ -.-++++++.++..=++.|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3344444555544445556666666666655430 1111111 1122222 223455666666666666666676667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 280 TILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
..++..+.+.+++.+|.++...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 76777766666666666666555543
No 294
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.69 E-value=2.6 Score=32.68 Aligned_cols=181 Identities=13% Similarity=0.010 Sum_probs=102.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHH
Q 015246 219 IGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 297 (410)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 297 (410)
.|-+.-|.--|.+.... .| -+.+||-+.--+...|+++.|.+.|+...+....-+-...|.- -++.-.|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-i~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-eeeeecCchHhhHH
Confidence 34444444445444443 33 3567888887888889999999999888877433222222222 23445688888877
Q ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHHccCChHHHHH-HHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 015246 298 HLEYMNKIGF-DSNLEAYNCIVDRLGKDGKIDHAIN-VFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI 375 (410)
Q Consensus 298 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 375 (410)
-+...-+.+. .|-...|-.+. ...-++.+|.. +.++....+..-|...+..+.- |+.. ...+++++.... ..
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a-~~ 228 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKADA-TD 228 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc-cc
Confidence 7766655431 12222222222 22335666654 4445555565666555444332 2221 122333333211 11
Q ss_pred -------cHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 376 -------LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 376 -------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
-..||..+..-+...|+.++|..+|+-....++
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 135788888899999999999999998776554
No 295
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.68 E-value=0.3 Score=40.28 Aligned_cols=91 Identities=14% Similarity=-0.109 Sum_probs=57.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccCC---chhHHHHHHHHHhcCC
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNKIGFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVKD---SFTYSSMVHNLCKAKR 357 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~ 357 (410)
-...|.+.|.+++|+..|...... .| ++.++..-..+|.+..++..|..-.......| ...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 355677778888888888776663 34 66666667777777777777766555554442 2344444444455666
Q ss_pred hhhHHHHHHHHHHcCCCCc
Q 015246 358 LPSASKLLLSCLKSGVRIL 376 (410)
Q Consensus 358 ~~~A~~~~~~~~~~~~~~~ 376 (410)
..+|.+-++..++. .|+
T Consensus 181 ~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHhHHHHHhh--Ccc
Confidence 66676666666644 454
No 296
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.66 E-value=2.4 Score=32.23 Aligned_cols=86 Identities=15% Similarity=0.068 Sum_probs=44.5
Q ss_pred HHHHccCChHHHHHHHHhhccC--C----chhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCC
Q 015246 319 DRLGKDGKIDHAINVFESMEVK--D----SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
..+...|++++|..-++..... | ..+-..|.+.....|.+++|+..++...+.++ .......-++++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 4455666666666666644432 1 11223344455566666666666665543322 12223334455666666
Q ss_pred HHHHHHHHHHHHHc
Q 015246 393 RREAKKIQSKIRMA 406 (410)
Q Consensus 393 ~~~a~~~~~~~~~~ 406 (410)
.++|+.-|++..+.
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666665554
No 297
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=93.53 E-value=0.85 Score=29.93 Aligned_cols=40 Identities=10% Similarity=-0.027 Sum_probs=17.0
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
-++.+....+.|++......+++|.+.+++..|.++++-+
T Consensus 29 ~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 29 GLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333334444444444444444444444444444433
No 298
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.47 E-value=2.4 Score=31.61 Aligned_cols=37 Identities=16% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHH
Q 015246 52 DLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRV 88 (410)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 88 (410)
+.++.+.+.+++|+...+..+++.+.+.|++....++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444444555666666666666666666655444443
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.33 E-value=0.21 Score=25.48 Aligned_cols=29 Identities=10% Similarity=0.060 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.+|..++.++...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45777888888888888888888888765
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.31 E-value=0.46 Score=31.47 Aligned_cols=48 Identities=13% Similarity=-0.066 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 359 PSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 359 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
-+..+-++.+...++-|++......+.+|.+.+++.-|.++++-++.+
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 356666777777777888888888888888888888888888877654
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.23 E-value=1.6 Score=28.99 Aligned_cols=41 Identities=10% Similarity=-0.040 Sum_probs=16.1
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
-++.+....+.|++......+++|.+.+++..|.++++-+.
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444443
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.15 E-value=0.22 Score=25.25 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
..|..+..++...|++++|++.+++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667777888888888888888888755
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.93 E-value=6.1 Score=34.75 Aligned_cols=122 Identities=10% Similarity=-0.016 Sum_probs=81.5
Q ss_pred HhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 015246 182 FRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAY 261 (410)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 261 (410)
...|+.-.|-+-+....+.- +-++.........+...|+++.+...+...... +.....+...+++.....|+++.|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566665554444444331 334444444455667789999998888776554 3445667788888888999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 262 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
..-.-|....++ ++.............|-++++...|+++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 988888766544 55555544445556778888888888887653
No 304
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=3.9 Score=32.17 Aligned_cols=14 Identities=21% Similarity=-0.002 Sum_probs=7.0
Q ss_pred CCHHHHHHHHHHHH
Q 015246 255 GKLEAAYLLLDEME 268 (410)
Q Consensus 255 ~~~~~a~~~~~~~~ 268 (410)
+++.+|...++...
T Consensus 87 ~~~~eAv~cL~~ai 100 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAI 100 (288)
T ss_pred cChHHHHHHHHHHH
Confidence 35555555555443
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.71 E-value=0.24 Score=25.39 Aligned_cols=31 Identities=13% Similarity=0.106 Sum_probs=17.0
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 015246 20 NRMREAGISPDVVTYNSLIAGATRNSLLSCSL 51 (410)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 51 (410)
++.++.. |-+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3334433 345556666666666666666554
No 306
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.48 E-value=1.7 Score=33.36 Aligned_cols=79 Identities=9% Similarity=-0.078 Sum_probs=60.6
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC---CCCCChhHHHHHHHHHhhcCch
Q 015246 41 ATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG---DLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++.+++.+..+. +-.+|+..+.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344454 778888888887765556666666666665 67899999999887764 3367899999999999999999
Q ss_pred HHHH
Q 015246 118 DNAL 121 (410)
Q Consensus 118 ~~a~ 121 (410)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8875
No 307
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=92.37 E-value=5.3 Score=32.63 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIR 404 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 404 (410)
++......|..+|.+.+|.++.++.+..+ +.+...+..++..+...||--.|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455677888999999999999988775 6677888888888999999888888777764
No 308
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.36 E-value=10 Score=35.84 Aligned_cols=308 Identities=10% Similarity=0.008 Sum_probs=142.2
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHH
Q 015246 42 TRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121 (410)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (410)
.+.|++..+.++...+....+ .....|..+... .....+++....+++-. +.+.....-...+..+.+.+++....
T Consensus 44 ~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~La~~~~w~~~~ 119 (644)
T PRK11619 44 WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQD-LMNQPAVQVTNFIRANP--TLPPARSLQSRFVNELARREDWRGLL 119 (644)
T ss_pred HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhc-cccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHccCHHHHH
Confidence 456777777776666542211 111122222111 11223444444444322 11222333334444555666766665
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhH--HHHHHHHHHH
Q 015246 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL--GLEILSAMKR 199 (410)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--a~~~~~~~~~ 199 (410)
..+. . .+.+...-.....+....|+.++|....+.+-..|. ..+.....++..+.+.|.... ..+-+..+..
T Consensus 120 ~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~ 193 (644)
T PRK11619 120 AFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRLAMK 193 (644)
T ss_pred HhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5221 1 233555555666777778887777666666544432 234455566666655544322 2222222222
Q ss_pred cCCCCChhhHHHHHHHH-----------H-HcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH--HhcCCHHHHHHHHH
Q 015246 200 KGYTFDGFGYCTVIAAF-----------V-KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY--CKEGKLEAAYLLLD 265 (410)
Q Consensus 200 ~~~~~~~~~~~~l~~~~-----------~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~ 265 (410)
.+ +......+...+ . -..+...+...+.. ++|+...-..++.++ ....+.+.|...+.
T Consensus 194 ~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~ 265 (644)
T PRK11619 194 AG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIP 265 (644)
T ss_pred CC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 22 111111111111 0 00111111111111 112221111111122 23445677888887
Q ss_pred HHHhCC-CCCch--HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--
Q 015246 266 EMEKQG-FECDK--YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 340 (410)
Q Consensus 266 ~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 340 (410)
...... ..+.. .+...+.......+...++...+...... ..+......-+....+.++++.+...+..|...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~ 343 (644)
T PRK11619 266 SLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK 343 (644)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc
Confidence 764432 22221 22333333333332245666666654432 224444555555555788888888888777554
Q ss_pred -CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 341 -DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 341 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
...-..-+.+++...|+.++|...|+++.
T Consensus 344 ~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 344 EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33445556677677888888888888874
No 309
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.14 E-value=6.2 Score=32.96 Aligned_cols=129 Identities=14% Similarity=0.211 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHhhCCC---CCcHHHHHHHHHHHHhccc--
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCK--AG----RLRTARWILKELGDSGH---APNAITYTTIMKCCFRNRK-- 186 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-- 186 (410)
++.+.+++.+.+.|+.-+..+|-+..-.... .. ....+..+|+.|++..+ .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455566666666666555444332222221 11 23456666766666421 1233344444332 2222
Q ss_pred --hhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015246 187 --YKLGLEILSAMKRKGYTFDGF--GYCTVIAAFVKIGR--LKEATDYMEQMVTDGVQLDIVSYNTLI 248 (410)
Q Consensus 187 --~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (410)
.+.++.+|+.+.+.|+..+.. ..+.++........ ..++.++++.+.+.|+++....|..+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 244555566666655544322 22222222211111 345666666666666666555555443
No 310
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.93 E-value=10 Score=35.10 Aligned_cols=178 Identities=14% Similarity=0.065 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCChhhHHHHHHHHHH-------cCCCCChHhHHHHHHHHHhc
Q 015246 12 FDAGYTILNRMREAGISPDVVTYNSLIAG-----ATRNSLLSCSLDLLDEMLE-------MGIPPDVWSYNSLMHCLFQL 79 (410)
Q Consensus 12 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 79 (410)
...|.+.++.....| +......+..+ +....+.+.|...|+...+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777777765 22222222222 3345678888888877766 33 233455566666653
Q ss_pred C-----ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh-cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 015246 80 G-----KPDEANRVFQDMICGDLTPCTATFNIMLNGLCK-NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC----KA 149 (410)
Q Consensus 80 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 149 (410)
. +.+.|..++......| .|+.......+..... ..+...|.++|....+.|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 4566777777777666 4554444333332222 24566777777777776643 22222222222 23
Q ss_pred CCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC
Q 015246 150 GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG 201 (410)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (410)
.+...|..++++..+.|. |....-...+..+.. +.++.+.-.+..+...+
T Consensus 378 r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 456677777777766652 221111112222222 55555555555555444
No 311
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.93 E-value=0.15 Score=37.18 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=45.0
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
+|+.+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++.. +..-...+++.|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45566666667777777777765554455666666777777666656666555511 11122334444555555
Q ss_pred hhHHHHHHHH
Q 015246 82 PDEANRVFQD 91 (410)
Q Consensus 82 ~~~a~~~~~~ 91 (410)
++.+.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 312
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.61 E-value=4.2 Score=29.95 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=6.1
Q ss_pred hcCChhHHHHHHHHH
Q 015246 78 QLGKPDEANRVFQDM 92 (410)
Q Consensus 78 ~~~~~~~a~~~~~~~ 92 (410)
..|+|.+|..+|+++
T Consensus 56 ~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 56 VRGDWDDALRLLREL 70 (160)
T ss_pred HhCCHHHHHHHHHHH
Confidence 334444444444443
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.57 E-value=1.8 Score=33.16 Aligned_cols=79 Identities=11% Similarity=-0.014 Sum_probs=59.5
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCH
Q 015246 76 LFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---GFVPELVTYNILIKGLCKAGRL 152 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~ 152 (410)
..+.|+ +.|.+.|-.+...+.-.++.....|... ....+.+++..++-...+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAty-Y~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATY-YTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 444454 6788888888877744555555555544 4578899999999988763 3367899999999999999999
Q ss_pred HHHH
Q 015246 153 RTAR 156 (410)
Q Consensus 153 ~~a~ 156 (410)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9874
No 314
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.51 E-value=0.56 Score=25.12 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=18.2
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 378 SAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 378 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566677777777777777777766643
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.44 E-value=6.9 Score=35.54 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=51.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 015246 146 LCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 225 (410)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 225 (410)
..+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|...... ..|+-.+...|+.+..
T Consensus 647 al~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHH
Confidence 34556666665555433 23444666666666666666666666554422 2344445555555544
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 226 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 266 (410)
..+-....+.|.. |....+|...|+++++.+++.+
T Consensus 712 ~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 712 AVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 4444444444322 2222345556666666655544
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.31 E-value=0.21 Score=36.47 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=42.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 015246 247 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 326 (410)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (410)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++... ..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence 344455556666666666666655444456666666666666665565555554111 1112234455555555
Q ss_pred hHHHHHHHHh
Q 015246 327 IDHAINVFES 336 (410)
Q Consensus 327 ~~~A~~~~~~ 336 (410)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.91 E-value=5.5 Score=36.10 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=89.9
Q ss_pred hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH
Q 015246 112 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
.-.|+++.|..++..+. ....+.++..+.+.|-.++|+++- +|.... .....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHH
Confidence 34566666666544332 223344556666667666665542 222211 23345667777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (410)
++..+. .+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|
T Consensus 658 ~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 665543 2556677888888888888888877766543 3455566677777766666666666665
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 272 FECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
.. +. ...++...|+++++.+++..-
T Consensus 723 ~~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 KN-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cc-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 32 22 233556678888877776544
No 318
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.80 E-value=15 Score=34.67 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=39.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHHc-
Q 015246 142 LIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG-YTFDGFGYCTVIAAFVKI- 219 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~- 219 (410)
....+.-.|+++.|.+.+-. ......+..++...+..|.-.+-.+... ..+.... -.|...-+..++..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 34566778999999998876 2223345566555554432222222111 2222211 011124466777777753
Q ss_pred --CCHHHHHHHHHHHHHc
Q 015246 220 --GRLKEATDYMEQMVTD 235 (410)
Q Consensus 220 --~~~~~a~~~~~~~~~~ 235 (410)
.+...|.+.+--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 4677777777665543
No 319
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.75 E-value=5.3 Score=29.48 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=9.9
Q ss_pred HHHccCChHHHHHHHHhhccC
Q 015246 320 RLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~ 340 (410)
.+...|++.+|.++|+++...
T Consensus 53 l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 53 LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHhCCHHHHHHHHHHHhcc
Confidence 334444555555555544443
No 320
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.71 E-value=12 Score=33.44 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=72.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH
Q 015246 204 FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI 283 (410)
Q Consensus 204 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 283 (410)
.|.....+++..+..+..+.-++.+..++...| .+-..+..++++|... ..+.-..+|+++.+..+. |...-..++
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344444455555555555555555555555532 2444555555555555 344455555555554322 222223333
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHccCChHHHHHHHHhhccC-----CchhHHHHHHHHH
Q 015246 284 DGLCKAGNIKGARLHLEYMNKIGFDS-----NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----DSFTYSSMVHNLC 353 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~ 353 (410)
.-|.+ ++.+.+..+|.++...=++. -.+.|..+...- ..+.+....+...+... -...+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 33332 55555555555554331110 012222222211 23344444444444433 1222333334455
Q ss_pred hcCChhhHHHHHHHHHHcC
Q 015246 354 KAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~ 372 (410)
...++++|++++...++.+
T Consensus 217 ~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 217 ENENWTEAIRILKHILEHD 235 (711)
T ss_pred cccCHHHHHHHHHHHhhhc
Confidence 5666666666666555443
No 321
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.69 E-value=6.3 Score=30.26 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=45.5
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCc----HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC
Q 015246 146 LCKAGRLRTARWILKELGDSGHAPN----AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 221 (410)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (410)
+.+.|++++|..-|...+..-.... ...|..-..++.+.+.++.|+.-..+.++.+ +.....+..-..+|.+...
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 4556666666666666555322111 2223333345555666666666665555554 2223333333445555566
Q ss_pred HHHHHHHHHHHHHc
Q 015246 222 LKEATDYMEQMVTD 235 (410)
Q Consensus 222 ~~~a~~~~~~~~~~ 235 (410)
++.|+.-|.++.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666553
No 322
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.67 E-value=0.43 Score=22.59 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=12.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 015246 381 KAVVDGLRHSGCRREAKKIQS 401 (410)
Q Consensus 381 ~~l~~~~~~~g~~~~a~~~~~ 401 (410)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445556666666666666554
No 323
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.55 E-value=9.3 Score=31.96 Aligned_cols=130 Identities=12% Similarity=0.134 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHH--c----CCHHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCC--
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVK--I----GRLKEATDYMEQMVTDGVQ---LDIVSYNTLINLYCKEGK-- 256 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-- 256 (410)
+..+.+++.+.+.|+..+..+|.+....... . .....+..+++.|.+..+- ++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445566666666666665554443322222 1 1245666777777765332 222333333322 2222
Q ss_pred --HHHHHHHHHHHHhCCCCCch--HHHHHHHHHHHhcCC--hhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 257 --LEAAYLLLDEMEKQGFECDK--YTHTILIDGLCKAGN--IKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 257 --~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
.+.+..+|+.+.+.|+..+. .....++..+..... ...+..+++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 24455666666665554332 223333322222211 3356677777777777766655554433
No 324
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=90.22 E-value=0.64 Score=22.61 Aligned_cols=25 Identities=12% Similarity=0.020 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 345 YSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 345 ~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
|..+...+...|++++|...+++.+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445555555555555555544
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.16 E-value=0.47 Score=23.75 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 345 YSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 345 ~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+..++.++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666777788888888888887765
No 326
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.15 E-value=31 Score=37.38 Aligned_cols=312 Identities=13% Similarity=0.040 Sum_probs=161.8
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGIS--PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+=.++|.+.+|+-.++.-.....+ ....-+-.+...|...++++....+...-.. +.. +..-+-.....|++
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEASGNW 1465 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHhhccH
Confidence 445778888888888884111101 1122333444488888888888877764221 222 23344456678999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHH
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNIL-IKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 161 (410)
..|...|+.+.+.+ ++....++.++......|.+.......+-.... ..+....++.+ +.+.-+.++++.....+.
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999998876 566778888888888888888777766665544 22233333333 344456666776666554
Q ss_pred HhhCCCCCcHHHHHHH--HHHHHhc--cchhHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHHcCCHHHHHHH
Q 015246 162 LGDSGHAPNAITYTTI--MKCCFRN--RKYKLGLEILSAMKRKGYTF---------DGFGYCTVIAAFVKIGRLKEATDY 228 (410)
Q Consensus 162 ~~~~~~~~~~~~~~~l--~~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~ 228 (410)
. .+..+|... .....+. .|.-.-.+..+.+.+.-+.| =...|..++....-. +-...
T Consensus 1543 --~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~ 1612 (2382)
T KOG0890|consen 1543 --D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENS 1612 (2382)
T ss_pred --c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHH
Confidence 1 122223222 2222221 12111112222222211000 011233333222211 11111
Q ss_pred HHHHHHcCCCCC------hhhHHHHH---HHHHhcCCHHHHHH-HHHHHHhC-CCC-CchHHHHHHHHHHHhcCChhHHH
Q 015246 229 MEQMVTDGVQLD------IVSYNTLI---NLYCKEGKLEAAYL-LLDEMEKQ-GFE-CDKYTHTILIDGLCKAGNIKGAR 296 (410)
Q Consensus 229 ~~~~~~~~~~~~------~~~~~~l~---~~~~~~~~~~~a~~-~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~ 296 (410)
.+.... ..++ ..-|..-+ +.+.+...+--|.+ .+...... +.. --..+|....+.....|.++.|.
T Consensus 1613 ~~~l~~--~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1613 IEELKK--VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHhhc--cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111 1111 11121111 11222111111111 11111111 111 12457888888888899999998
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 297 LHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
..+-...+.+ -+..+...+..+...|+...|+.++++..+.
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 8877777754 2356677788899999999999999987643
No 327
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.13 E-value=13 Score=32.99 Aligned_cols=107 Identities=13% Similarity=0.011 Sum_probs=64.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc---CCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCch--
Q 015246 214 AAFVKIGRLKEATDYMEQMVTD---GVQLD-----IVSYNTLINLYCKEGKLEAAYLLLDEMEK-------QGFECDK-- 276 (410)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~-- 276 (410)
..+.-.|++.+|.+++...--. |...+ -..||.+...+.+.|.+..+..+|....+ .|+.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 3455678888888777543221 21111 12235555556666777766666666543 3444332
Q ss_pred ---------HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015246 277 ---------YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 322 (410)
Q Consensus 277 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (410)
.+|+ ..-.|...|++-.|.+.|.+..+. +..++..|-.+..+|.
T Consensus 328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 1233 344567788888888888887765 5667788888887774
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.98 E-value=2.2 Score=33.05 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=42.0
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCCChHhHHHHHHH
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG--IPPDVWSYNSLMHC 75 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 75 (410)
+..+.+.+++++|+...+.-.+.. +.+...-..+++.++-.|+|++|..-++-.-... ..+....|..++++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345666677777777766666553 3455566666777777777777766665554432 12233455555554
No 329
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.93 E-value=2.1 Score=35.63 Aligned_cols=89 Identities=10% Similarity=0.056 Sum_probs=52.4
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
.|.++|++++|++.|....... +-++.++..-..+|.+..++..|..-.+.....+- .-...|..-+.+-...|...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Confidence 4677788888888777766553 23677777777777777777766665555544210 012234444444444556666
Q ss_pred HHHHHHHHhcC
Q 015246 85 ANRVFQDMICG 95 (410)
Q Consensus 85 a~~~~~~~~~~ 95 (410)
|.+-++..+..
T Consensus 184 AKkD~E~vL~L 194 (536)
T KOG4648|consen 184 AKKDCETVLAL 194 (536)
T ss_pred HHHhHHHHHhh
Confidence 66666655544
No 330
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.73 E-value=12 Score=32.16 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=43.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015246 205 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL---DIVSYNTLINLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
...++..++..+.+.|.++.|...+..+...+... .+.....-+...-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777788888888888877777643211 334444455666677777788777777765
No 331
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.71 E-value=2.7 Score=34.63 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC----Cch
Q 015246 271 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG---FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSF 343 (410)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~ 343 (410)
|......+...++..-....+++++...+-++.... ..|+. +-...++.+.+ -++++++.++..-..- |..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 334444455555555555566667766666655421 01111 11122222222 2445555554433332 666
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++..+++.+.+.+++.+|.++.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6666777777777776666666655543
No 332
>PRK09687 putative lyase; Provisional
Probab=89.66 E-value=11 Score=31.34 Aligned_cols=233 Identities=13% Similarity=-0.037 Sum_probs=118.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch----hHHHHHHHHHHHcCCCCChhhHH
Q 015246 135 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY----KLGLEILSAMKRKGYTFDGFGYC 210 (410)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~ 210 (410)
|.......+.++...|..+ +...+..+... ++...-...+.++...|+. +++...+..+... .++..+..
T Consensus 36 d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQD-VFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CHHHHHHHHHHHHhcCcch-HHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 4444444455555554322 22222233221 3444444444555555542 3445555544333 34444444
Q ss_pred HHHHHHHHcCCH-----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 015246 211 TVIAAFVKIGRL-----KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 285 (410)
Q Consensus 211 ~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (410)
..+.++...+.. ..+...+..... .++..+-...+.++.+.++ ..+...+-.+.+. ++...-...+.+
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~a 182 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFA 182 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHH
Confidence 444444443311 222333333322 2355555666667776665 3455555555542 344455555555
Q ss_pred HHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHH
Q 015246 286 LCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKL 364 (410)
Q Consensus 286 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 364 (410)
+...+ ....+...+..+.. .++..+-...+.++.+.|+. .|...+-.....+. .....+.++...|.. +|+..
T Consensus 183 Lg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-~~~~a~~ALg~ig~~-~a~p~ 256 (280)
T PRK09687 183 LNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-VGDLIIEAAGELGDK-TLLPV 256 (280)
T ss_pred HhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-hHHHHHHHHHhcCCH-hHHHH
Confidence 55542 23455555555553 35666667777777777774 44444444443322 344566777777774 68888
Q ss_pred HHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 365 LLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
+.++.+. .||..+-.....+|.
T Consensus 257 L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 257 LDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhh--CCChhHHHHHHHHHh
Confidence 8888754 446666655555553
No 333
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.48 E-value=13 Score=32.04 Aligned_cols=192 Identities=10% Similarity=0.013 Sum_probs=86.1
Q ss_pred HHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----CcHHHHHHHHHHHH
Q 015246 107 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHA----PNAITYTTIMKCCF 182 (410)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 182 (410)
...+.-+.|+++...+........ .++...+..+... ..++++++...++.....-.. .....|........
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 345667788888855555544432 2244445544433 778888888888776552100 11122222222222
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH-----cCCHHH---HHHHHHHHHHc--CCCCChhhHHHHHHHHH
Q 015246 183 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-----IGRLKE---ATDYMEQMVTD--GVQLDIVSYNTLINLYC 252 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~---a~~~~~~~~~~--~~~~~~~~~~~l~~~~~ 252 (410)
+.....+..++.+-..... .+......++..+.. ..+++. ...+-..+... .......+|..++..+.
T Consensus 80 ~lq~L~Elee~~~~~~~~~--~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aR 157 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS--QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLAR 157 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 2223333333333221111 112222222222221 111111 11111111110 01223345556666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 253 KEGKLEAAYLLLDEMEKQGFEC---DKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
+.|.++.|...+..+...+... .+.....-++..-..|+..+|...++...+
T Consensus 158 k~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 158 KAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777766666665543111 233344445555566666666666666555
No 334
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.38 E-value=1.2 Score=23.75 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLE 59 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 59 (410)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455555566666666666666555543
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.35 E-value=1.1 Score=22.63 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.+|..+...+...|++++|...|++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788888888888888888888754
No 336
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=89.33 E-value=9.3 Score=31.10 Aligned_cols=87 Identities=16% Similarity=0.110 Sum_probs=44.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHH-----
Q 015246 143 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV----- 217 (410)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 217 (410)
|.++...+++.++....-+.-+..-+..+.....-|-.|.+.+.+..+.++-+......-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455556666666655544443322222334444455556666666666666666554422223333554444443
Q ss_pred HcCCHHHHHHHH
Q 015246 218 KIGRLKEATDYM 229 (410)
Q Consensus 218 ~~~~~~~a~~~~ 229 (410)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 346666666655
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.63 E-value=12 Score=30.36 Aligned_cols=201 Identities=13% Similarity=0.045 Sum_probs=111.2
Q ss_pred CCCCChhHHHHHHHH-HhhcCchHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCC
Q 015246 96 DLTPCTATFNIMLNG-LCKNRYTDNALRMFRGLQKHGFVPELV---TYNILIKGLCKAGRLRTARWILKELGD---SGHA 168 (410)
Q Consensus 96 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~ 168 (410)
+-.||+..-|..-.+ -.+..++++|+.-|.+..+........ ....++..+.+.+++++....+.++.. +.+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 335666544433222 123457888888888887753332333 334567778888888888888887743 1111
Q ss_pred --CcHHHHHHHHHHHHhccchhHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----
Q 015246 169 --PNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-----GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV---- 237 (410)
Q Consensus 169 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 237 (410)
-+..+.+.++.....+.+.+...++++.-.+. +-..--.+-..+...|...+.+.+..+++.++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 23455666666666666666655555543321 1011112334566677777777777777777765411
Q ss_pred CCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCchHHHHHHHHHH-----HhcCChhHHHH
Q 015246 238 QLD-------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FECDKYTHTILIDGL-----CKAGNIKGARL 297 (410)
Q Consensus 238 ~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~ 297 (410)
..| ...|..-++.|....+-.....++++..... ..|.+.. ..+++-| .+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHh
Confidence 001 2355566667777777777777777654322 2333332 3344443 34566666644
No 338
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.46 E-value=7.8 Score=28.17 Aligned_cols=19 Identities=32% Similarity=0.649 Sum_probs=9.0
Q ss_pred HHhcCChhHHHHHHHHHhc
Q 015246 76 LFQLGKPDEANRVFQDMIC 94 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~ 94 (410)
+...|+|.+|..+|+++..
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3344445555555544443
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.27 E-value=1.4 Score=24.21 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=18.1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 347 SMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 347 ~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
.+..+|...|+.+.|.+++++.+..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 45667777777777777777777544
No 340
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.18 E-value=43 Score=36.42 Aligned_cols=321 Identities=12% Similarity=0.041 Sum_probs=162.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMGI--PPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK 113 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (410)
.+..+-.+.+.+.+|.-.++.-..... .....-+..+...|...++++...-+...-.. .|+ .+. -+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s--l~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS--LYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc--HHH-HHHHHHh
Confidence 344455667888888888887311100 01123344444588888888888777664211 222 222 3344556
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHH-HHHHHhccchhHHHH
Q 015246 114 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTI-MKCCFRNRKYKLGLE 192 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 192 (410)
.|++..|...|+.+.+.+. +....++-++......|.++.++...+-.... ..+....++.+ ..+.-+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 7899999999999988732 34677787787777788888877766655443 22333333332 234456677777666
Q ss_pred HHHHHHHcCCCCChhhHHH--HHHHHHHc--CCHHHHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHhcCCHHH
Q 015246 193 ILSAMKRKGYTFDGFGYCT--VIAAFVKI--GRLKEATDYMEQMVTDGVQL---------DIVSYNTLINLYCKEGKLEA 259 (410)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~--~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~ 259 (410)
... .. +..+|.. +.....+. .|.-.-.+.++.+.+.-+.| -...|..++....-..-...
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~ 1612 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS 1612 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 554 11 1112221 22222222 12211112232222211110 01223333332221111000
Q ss_pred HHHHHHHHH-hCCCCCchHHHHHHHHHHHhcCChhHHHHHHHH-HHhcCCC-----CCHHHHHHHHHHHHccCChHHHHH
Q 015246 260 AYLLLDEME-KQGFECDKYTHTILIDGLCKAGNIKGARLHLEY-MNKIGFD-----SNLEAYNCIVDRLGKDGKIDHAIN 332 (410)
Q Consensus 260 a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 332 (410)
. +.+.... ......+...|..-+..-....+..+-+-.+++ +...... -....|....+...+.|.++.|..
T Consensus 1613 ~-~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1613 I-EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred H-HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 0 0000000 000011111111111111111111111111222 1111112 225677788888888999999987
Q ss_pred HHHhhccC-CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 333 VFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 333 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
.+-...+. -+..+-..+..+-..|+...|+.++++-++..
T Consensus 1692 all~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 76666555 67778888888899999999999999988653
No 341
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.04 E-value=26 Score=33.75 Aligned_cols=223 Identities=13% Similarity=0.018 Sum_probs=119.6
Q ss_pred HHHhccchhHHHHHHHHHHHcCCCCChh-------hHHHH-HHHHHHcCCHHHHHHHHHHHHHc----CCCCChhhHHHH
Q 015246 180 CCFRNRKYKLGLEILSAMKRKGYTFDGF-------GYCTV-IAAFVKIGRLKEATDYMEQMVTD----GVQLDIVSYNTL 247 (410)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 247 (410)
......++++|..++.++...-..|+.. .++.+ .......|+++.+.++.+..... ...+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3455688999999988877553232221 12222 12334568999999988887764 122344556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchH---HHHHH--HHHHHhcCCh--hHHHHHHHHHHhc--CCCC----CHHHH
Q 015246 248 INLYCKEGKLEAAYLLLDEMEKQGFECDKY---THTIL--IDGLCKAGNI--KGARLHLEYMNKI--GFDS----NLEAY 314 (410)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~~~~--~~a~~~~~~~~~~--~~~~----~~~~~ 314 (410)
..+..-.|++++|..+..+..+..-.-+.. .+..+ ...+...|.. .+....+...... +-.| -.-+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 777788899999999888776542222322 22222 2234556632 2233333333221 0011 12233
Q ss_pred HHHHHHHHcc-CChHHHHHHHHhhccC---Cc---hhHHHHHHHHHhcCChhhHHHHHHHHHHcCC----CCcHhhHHHH
Q 015246 315 NCIVDRLGKD-GKIDHAINVFESMEVK---DS---FTYSSMVHNLCKAKRLPSASKLLLSCLKSGV----RILKSAQKAV 383 (410)
Q Consensus 315 ~~l~~~~~~~-g~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l 383 (410)
..+..++.+. +...++..-++-.... .. ..+..++......|+.++|...++++..... .++..+....
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4444555441 1122222222211111 11 1223567778889999999999988875432 2333333333
Q ss_pred HHH--HhhcCCHHHHHHHHHH
Q 015246 384 VDG--LRHSGCRREAKKIQSK 402 (410)
Q Consensus 384 ~~~--~~~~g~~~~a~~~~~~ 402 (410)
+.. ....|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 333 3568888888777655
No 342
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.01 E-value=1.8 Score=24.98 Aligned_cols=38 Identities=8% Similarity=-0.042 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHH
Q 015246 345 YSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 384 (410)
Q Consensus 345 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 384 (410)
...+..++.+.|++++|.+..+.+++. .|+..-...|-
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 345667788889999999998888865 56655444443
No 343
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=87.97 E-value=2.4 Score=29.49 Aligned_cols=47 Identities=15% Similarity=0.027 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 360 SASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 360 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+..+-+..+...++-|++......+++|.+.+|+.-|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34445555555566677777777777777777777777777666543
No 344
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.89 E-value=14 Score=30.40 Aligned_cols=63 Identities=5% Similarity=-0.030 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCcHHHHHHHHHHHHhccchhHHHHHHH
Q 015246 133 VPELVTYNILIKGLCKAGRLRTARWILKELGDS-GHAPNAITYTTIMKCCFRNRKYKLGLEILS 195 (410)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 195 (410)
.++..+....++.++..+++..-.++++..... +...|...|..++......|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 345555555556666666666666665555443 334455556666666666666554444444
No 345
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=87.76 E-value=8.7 Score=28.98 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 015246 358 LPSASKLLLSCLKSGVRILKSAQKAVVDGL 387 (410)
Q Consensus 358 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (410)
+++|.+.|+++... .|+...|+.-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34455555555533 56666666655554
No 346
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.70 E-value=8.8 Score=27.91 Aligned_cols=51 Identities=16% Similarity=-0.032 Sum_probs=25.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 253 KEGKLEAAYLLLDEMEKQGFECDKY-THTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
..++++++..++..+.-. .|+.. .-..-...+...|++.+|.++|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 355666666666665543 22211 1111223345566666666666666554
No 347
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.64 E-value=1.9 Score=23.72 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 015246 142 LIKGLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~ 164 (410)
+..+|...|+.+.|.++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34444455555555555554443
No 348
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=87.41 E-value=10 Score=30.83 Aligned_cols=89 Identities=6% Similarity=-0.089 Sum_probs=57.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH----
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL---- 111 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 111 (410)
.=|++++..++|.+++...-+.-+..-+..+.+...-|-.|.+.+++..+.++-.......-..+...|..++..|
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 3478888888888887766554432111224455566667888888888888877776542233334465555444
Q ss_pred -hhcCchHHHHHHH
Q 015246 112 -CKNRYTDNALRMF 124 (410)
Q Consensus 112 -~~~~~~~~a~~~~ 124 (410)
.-.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 4478888888877
No 349
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=86.51 E-value=6.8 Score=27.37 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=19.7
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
-++.+....+.|++......+++|.+.+++..|.++|+-+.
T Consensus 71 glN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 71 GLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555554444
No 350
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.50 E-value=34 Score=33.44 Aligned_cols=115 Identities=14% Similarity=0.186 Sum_probs=57.6
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCC---CCChhhHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCChhhHH---
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRKGY---TFDGFGYCTVIAAFVKIGRL--KEATDYMEQMVTDGVQLDIVSYN--- 245 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~--- 245 (410)
|..|+..|...|+.++|++++.+..+..- ..-...+...+..+.+.+.. +-+++.-....+.........+.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 66677777777777777777777665320 11111222334444444433 34444333333322111111111
Q ss_pred ---------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 015246 246 ---------TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK 288 (410)
Q Consensus 246 ---------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (410)
..+-.|......+.+..+++.+....-.++...++.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1122345556667777777777665545566666666666543
No 351
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=86.27 E-value=17 Score=29.87 Aligned_cols=65 Identities=8% Similarity=0.075 Sum_probs=39.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHhcCChhHHHHHHHH
Q 015246 237 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDGLCKAGNIKGARLHLEY 301 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 301 (410)
..++..+...++..++..+++..-.+++...... +...|...|..++......|+..-...+.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 3455566666666667777777666666665544 3444666666666666666666555555443
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.21 E-value=8.4 Score=30.08 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=22.6
Q ss_pred HHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHH
Q 015246 74 HCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGL 127 (410)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (410)
+.+.+.+..++++....+-.+.. +.+...-..+++.++-.|++++|..-++-.
T Consensus 9 seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 33444444444444444333332 333334444444444444444444444433
No 353
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.14 E-value=17 Score=29.52 Aligned_cols=207 Identities=15% Similarity=0.075 Sum_probs=131.3
Q ss_pred CCCCChHhHHHHHHHH-HhcCChhHHHHHHHHHhcCCCCCChh---HHHHHHHHHhhcCchHHHHHHHHHHHhC---CC-
Q 015246 61 GIPPDVWSYNSLMHCL-FQLGKPDEANRVFQDMICGDLTPCTA---TFNIMLNGLCKNRYTDNALRMFRGLQKH---GF- 132 (410)
Q Consensus 61 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 132 (410)
+..||+..=|..-..- .+..++++|+.-|+.+.+..-..... +...++....+.+++++.+..+.++... .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3456665444322221 24457999999999988763233333 3445788899999999999999988642 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC----
Q 015246 133 -VPELVTYNILIKGLCKAGRLRTARWILKELGDS-----GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY---- 202 (410)
Q Consensus 133 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 202 (410)
.-+..+.|.++.......+.+--...++.-.+. +-..=-.|-..+...|...+.+.+..+++.++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 124567788888888788877777777654331 1111112334577788889999999999998875411
Q ss_pred CCC-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCChhhHHHHHH----HHHhcCCHHHHHHHHHHH
Q 015246 203 TFD-------GFGYCTVIAAFVKIGRLKEATDYMEQMVTD-GVQLDIVSYNTLIN----LYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 203 ~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~ 267 (410)
..| ...|..-+..|....+-.....++++.... ..-|.+.....+-. ...+.|++++|..-|-+.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 111 235666778888888888888888887653 22345544443322 245678888876544333
No 354
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.08 E-value=24 Score=31.40 Aligned_cols=43 Identities=5% Similarity=-0.196 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 015246 346 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 389 (410)
Q Consensus 346 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (410)
......|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 339 YNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 339 YNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 34455677788888888888777755 56677788888777754
No 355
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.01 E-value=31 Score=32.59 Aligned_cols=396 Identities=14% Similarity=0.107 Sum_probs=196.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHhcCChhhHHHHHHHHHHcC----CCCChHhHHHH-HHHHH
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVV-----TYNSLIAGATRNSLLSCSLDLLDEMLEMG----IPPDVWSYNSL-MHCLF 77 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~ 77 (410)
...+++.|...+++....--.++.. ....++..+.+.+... |...+++..+.- ..+-...|..+ +..+.
T Consensus 72 eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 72 ETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred HcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 5678999999999876543222222 2234566666666555 888888876541 11222333333 33333
Q ss_pred hcCChhHHHHHHHHHhcCC---CCCChhHHHHHHHHHh--hcCchHHHHHHHHHHHhCC---------CCCCHHHHHHHH
Q 015246 78 QLGKPDEANRVFQDMICGD---LTPCTATFNIMLNGLC--KNRYTDNALRMFRGLQKHG---------FVPELVTYNILI 143 (410)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~ 143 (410)
..+++..|.+.++.+.... ..|-..++..++.+.. ..+..+++.+.++.+.... ..|...+|..++
T Consensus 151 ~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll 230 (608)
T PF10345_consen 151 QHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLL 230 (608)
T ss_pred hcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHH
Confidence 3479999999998876542 2444455555555544 3455667777777663321 233556666666
Q ss_pred HHH--HhcCCHHHHHHHHHHHhh-------CC----------CC-------------CcH---------HHHHHHHH--H
Q 015246 144 KGL--CKAGRLRTARWILKELGD-------SG----------HA-------------PNA---------ITYTTIMK--C 180 (410)
Q Consensus 144 ~~~--~~~~~~~~a~~~~~~~~~-------~~----------~~-------------~~~---------~~~~~l~~--~ 180 (410)
+.+ ...|+++.+...++.+.+ .. ++ +.. ....-++. .
T Consensus 231 ~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~ 310 (608)
T PF10345_consen 231 DLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLH 310 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHH
Confidence 655 456777777766665522 10 00 000 01111111 2
Q ss_pred HHhccchhHHHHHHHH-------HH-HcCCCCCh--------hhHHHH---------HHHHHHcCCHHHHHHHHHHHHHc
Q 015246 181 CFRNRKYKLGLEILSA-------MK-RKGYTFDG--------FGYCTV---------IAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 181 ~~~~~~~~~a~~~~~~-------~~-~~~~~~~~--------~~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
....+..+++.+++++ .. .....+.. ..+... +....-.+++..|...++.+...
T Consensus 311 ~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~ 390 (608)
T PF10345_consen 311 NLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQL 390 (608)
T ss_pred HhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2333444455555444 44 11111111 111111 11223568899999999988764
Q ss_pred CC-CCC-----hhhHHHHHH--HHHhcCCHHHHHHHHH--------HHHhCCCCCchHHHHHH--HHHHHhcC--ChhH-
Q 015246 236 GV-QLD-----IVSYNTLIN--LYCKEGKLEAAYLLLD--------EMEKQGFECDKYTHTIL--IDGLCKAG--NIKG- 294 (410)
Q Consensus 236 ~~-~~~-----~~~~~~l~~--~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~- 294 (410)
.. .|+ ...+..++. .+...|+.+.|...|. .....+...+..++..+ +..+...+ ...+
T Consensus 391 ~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~ 470 (608)
T PF10345_consen 391 CQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSES 470 (608)
T ss_pred HhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhh
Confidence 21 111 122222332 3446799999999998 34444444344333332 11222222 2223
Q ss_pred -HHHHHHHHHhc-CCCC--CHHHHHHH-HHHHHccC--ChHHHHHHHHhhc-----cC-Cc----hhHHHHHHHHHhcCC
Q 015246 295 -ARLHLEYMNKI-GFDS--NLEAYNCI-VDRLGKDG--KIDHAINVFESME-----VK-DS----FTYSSMVHNLCKAKR 357 (410)
Q Consensus 295 -a~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~g--~~~~A~~~~~~~~-----~~-~~----~~~~~l~~~~~~~~~ 357 (410)
+..+++.+... .-.| +..++..+ +.++.... ...++...+.+.. .. +. .+++.+...+. .|+
T Consensus 471 ~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~ 549 (608)
T PF10345_consen 471 ELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGD 549 (608)
T ss_pred HHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCC
Confidence 66666665432 1122 22233333 33332211 1223433333211 11 11 22333333333 788
Q ss_pred hhhHHHHHHHHHHcCCC-C--cHhhHH-----HHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 358 LPSASKLLLSCLKSGVR-I--LKSAQK-----AVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 358 ~~~A~~~~~~~~~~~~~-~--~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
..+..+..........+ | ....|. .+...+...|+.++|.....+..+
T Consensus 550 ~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 550 VGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 87766665554432111 2 334443 233447789999999999887765
No 356
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.12 E-value=20 Score=29.53 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 209 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
+......|..+|.+.+|.++.+..... -+.+...+-.++..+...|+--.+.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltl-dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTL-DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344556667777777777777776665 2335566666777777777766666666555
No 357
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=84.81 E-value=13 Score=29.70 Aligned_cols=96 Identities=11% Similarity=-0.073 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh------cCCCCCHH-----------HHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNK------IGFDSNLE-----------AYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
..+...-..-+.+.|++.+|...|++.+. ..-+|... .+..+.+++...|++-++++.-.++.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555556667888999999999988642 11233222 22334456667788888888777776
Q ss_pred cC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 339 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 339 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.. +..+|..-..+.+..=+.++|..-|...++.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 66 5556666666666666778888888888765
No 358
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=83.84 E-value=38 Score=31.70 Aligned_cols=31 Identities=23% Similarity=0.127 Sum_probs=0.0
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCcHhhHHHH
Q 015246 353 CKAKRLPSASKLLLSCLKSGVRILKSAQKAV 383 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 383 (410)
.+.|++.+|.+.+-.+++.+..|...-...+
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp -------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 3457888888888887776666654433333
No 359
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.78 E-value=41 Score=32.01 Aligned_cols=150 Identities=10% Similarity=0.067 Sum_probs=78.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCC---ChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015246 73 MHCLFQLGKPDEANRVFQDMICGDLTP---CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 149 (410)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (410)
++.+.+.+.+++|+++.+..... .| -...+..++..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45666677777777776654432 33 3445666777777778888877777777654 555555555555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHH-----------------HcCCCCChhhHHHH
Q 015246 150 GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK-----------------RKGYTFDGFGYCTV 212 (410)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~~~~~l 212 (410)
++......++ .......+...|..++..+.. .+...-.+...... +.+ .-+......|
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~e~L 511 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALLEVL 511 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHHHHH
Confidence 5544332222 221112344455555544443 22111111111100 000 1122233446
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 015246 213 IAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 213 ~~~~~~~~~~~~a~~~~~~~~ 233 (410)
+..|...++++.|..++-...
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHccChHHHHHHHHhcc
Confidence 777777788888877766554
No 360
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.61 E-value=41 Score=31.97 Aligned_cols=102 Identities=9% Similarity=0.025 Sum_probs=68.4
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISP---DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL 79 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (410)
|+.+.+.+.+++|++..+..... .| ........|..+...|++++|-...-.|... +...|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45677888889998887665543 33 3456778888889999999999888888753 566666666666666
Q ss_pred CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh
Q 015246 80 GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK 113 (410)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (410)
++......+ +.......+...|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 655443332 2322223456677777777766
No 361
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.25 E-value=8.9 Score=27.31 Aligned_cols=64 Identities=9% Similarity=0.081 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHccCC---hHHHHHHHHhhccC-----CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 308 DSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 308 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.++..+-..+..++.+..+ ..+.+.+++.+.+. .......|.-++.+.++++.+.++.+.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5666677777788877665 44566777777652 3445566677888999999999999998865
No 362
>PRK09687 putative lyase; Provisional
Probab=82.89 E-value=26 Score=29.12 Aligned_cols=136 Identities=11% Similarity=-0.009 Sum_probs=61.4
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG-RLKEATDYMEQMVTDGVQLDIVSYNTLI 248 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (410)
+..+-...+.++.+.++ +.++..+-.+.+. ++...-...+.++.+.+ +...+...+..+... ++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 44444444455555444 2344444444432 23333333333443332 123444444444432 3455555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 249 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
.++.+.++. .+...+-...+.+ + .....+.++...|.. +|...+..+.+. .||..+-...+.++
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 666666653 3444444443332 1 223455566666664 456666665542 33555544444444
No 363
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.27 E-value=47 Score=31.61 Aligned_cols=73 Identities=8% Similarity=-0.100 Sum_probs=37.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015246 72 LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 150 (410)
Q Consensus 72 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 150 (410)
.+..+.+.+++......+.. . +.+...-.....+....|+.++|....+.+-..|.. .+...+.++..+.+.|
T Consensus 105 ~l~~La~~~~w~~~~~~~~~----~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 105 FVNELARREDWRGLLAFSPE----K-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHccCHHHHHHhcCC----C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcC
Confidence 34445556666655552211 1 344444445566666677766666666555444322 3444455555554433
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=82.16 E-value=7.1 Score=35.37 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=56.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHH
Q 015246 288 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKL 364 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 364 (410)
..|+...|...+.........-.......+.+...+.|....|-.++.+.... .+-++..+.+++....+.+.|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34666777777666554321112223444556666666666777766655443 556667777777777788888888
Q ss_pred HHHHHHcCCCCcHhhHHHHH
Q 015246 365 LLSCLKSGVRILKSAQKAVV 384 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~ 384 (410)
|+++++.. +.+...-+.+.
T Consensus 699 ~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 699 FRQALKLT-TKCPECENSLK 717 (886)
T ss_pred HHHHHhcC-CCChhhHHHHH
Confidence 87777653 33444444443
No 365
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=81.94 E-value=15 Score=26.83 Aligned_cols=64 Identities=16% Similarity=0.135 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 17 TILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
++.+.+.+.|++++.. -..++..+...++.-.|.++++.+.+.++..+..|....+..+...|-
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 4556667777665553 345677777777778899999999888776666666666666666663
No 366
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=81.94 E-value=29 Score=28.99 Aligned_cols=83 Identities=16% Similarity=0.143 Sum_probs=38.8
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----c
Q 015246 183 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----E 254 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 254 (410)
..+++..+...+......+. ......+...|.. ..+..+|..++....+.|.. .....+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 34566666666666665331 1222233333322 22455666666655544322 222223333332 2
Q ss_pred CCHHHHHHHHHHHHhCC
Q 015246 255 GKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 255 ~~~~~a~~~~~~~~~~~ 271 (410)
.+..+|...+....+.|
T Consensus 127 ~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 127 LDLVKALKYYEKAAKLG 143 (292)
T ss_pred cCHHHHHHHHHHHHHcC
Confidence 35556666666665555
No 367
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.82 E-value=16 Score=28.89 Aligned_cols=24 Identities=25% Similarity=0.165 Sum_probs=13.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 383 VVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 383 l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
++....+.|+.++|.+.|.++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 334445566666666666555443
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.17 E-value=7.3 Score=24.64 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=24.8
Q ss_pred hcCChhhHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCChhHHHHH
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPD--VWSYNSLMHCLFQLGKPDEANRV 88 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~ 88 (410)
..++.++|+..|....+.-..+. ..++..++.+++..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666655422211 23455566666666666665544
No 369
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=79.03 E-value=31 Score=27.57 Aligned_cols=48 Identities=15% Similarity=0.028 Sum_probs=19.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcH-HHHHHHHHHHHhccchhHHHHHHHHHH
Q 015246 149 AGRLRTARWILKELGDSGHAPNA-ITYTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
...++.|+.-|.+.+.. .|+. ..|..-+.++.+..+++.+..--.+.+
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrral 71 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL 71 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence 33444444444443332 2333 223333444444455544444444333
No 370
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.95 E-value=7.1 Score=30.20 Aligned_cols=32 Identities=19% Similarity=0.089 Sum_probs=16.4
Q ss_pred CCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 374 RILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 374 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
.|++.++..++.++...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555554443
No 371
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=78.88 E-value=40 Score=28.74 Aligned_cols=24 Identities=21% Similarity=0.051 Sum_probs=15.3
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCC
Q 015246 350 HNLCKAKRLPSASKLLLSCLKSGV 373 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~~~ 373 (410)
..+.+.|..+.|..+++.+++.++
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHHc
Confidence 334556777777777777766543
No 372
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.92 E-value=28 Score=26.42 Aligned_cols=41 Identities=10% Similarity=-0.053 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 257 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
+++|...|++..+. .|+..+|+.-+... .+|-.+..++.+.
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 44455555555554 56666666666554 2344455555444
No 373
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=77.58 E-value=9.7 Score=25.89 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=15.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMG 61 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~ 61 (410)
+..+.++...++|+++++.|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 445555666666777777666665
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.52 E-value=76 Score=31.23 Aligned_cols=116 Identities=13% Similarity=0.116 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCC--C-CChHhHHHHHHHHHhcCCh--hHHHHHHHHHhcCCCCCChhHHH--
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGI--P-PDVWSYNSLMHCLFQLGKP--DEANRVFQDMICGDLTPCTATFN-- 105 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 105 (410)
-|..|+..|...|..++|+++|.+.....- . --..-+..+++.+.+.+.. +-.++.-+.............+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 356677777777777777777777765310 0 0111223344444444433 33333333333221111011111
Q ss_pred ----------HHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015246 106 ----------IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 148 (410)
Q Consensus 106 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (410)
.-+-.|......+-+..+++.+....-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1122334445555566666666554444455555555555543
No 375
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=77.46 E-value=29 Score=26.38 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHhcCCCCCC--hhHH-----HHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 015246 82 PDEANRVFQDMICGDLTPC--TATF-----NIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG 150 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~--~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 150 (410)
.+.|+.+++.+.+.-..|. ...- ...+..|.+.|.+++|.+++++.... |+......-+....+.+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 4566666666655432221 1111 12344677777777777777777663 33333344444444433
No 376
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=76.89 E-value=9.4 Score=22.93 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=9.6
Q ss_pred HHHHHHhcCChhhHHHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~ 368 (410)
.+.++...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444455555554444444
No 377
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.55 E-value=46 Score=29.18 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=21.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChH--hHHHHHHHHH--hcCChhHHHHHHHHHh
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPDVW--SYNSLMHCLF--QLGKPDEANRVFQDMI 93 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~ 93 (410)
..+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 455555555555555544 333222 2223333332 2334445555555444
No 378
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.46 E-value=20 Score=24.02 Aligned_cols=51 Identities=12% Similarity=0.100 Sum_probs=26.7
Q ss_pred HHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC
Q 015246 75 CLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG 131 (410)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 131 (410)
.+...|++++|..+.+.+. .||...|..|.. .+.|..+++..-+..+...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445566666666555442 556665554433 24455555555555555543
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=75.99 E-value=12 Score=22.45 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 13 DAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLE 59 (410)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 59 (410)
+...++++.+... .-|-.-.-.+|.++...|++++|.+.++.+.+
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444332 22333444456666666666666666655543
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.94 E-value=54 Score=28.79 Aligned_cols=56 Identities=20% Similarity=0.067 Sum_probs=38.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchH--HHHHHHHHHH--hcCChhHHHHHHHHHHhc
Q 015246 249 NLYCKEGKLEAAYLLLDEMEKQGFECDKY--THTILIDGLC--KAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 305 (410)
..+.+.+++..|.+++..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456788999999999998876 444444 4444555554 356778888888877664
No 381
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.45 E-value=26 Score=32.08 Aligned_cols=85 Identities=20% Similarity=0.082 Sum_probs=38.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHH
Q 015246 219 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 298 (410)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 298 (410)
.|+...|...+.......+.........+.+...+.|-...|-.++.+..... ...+-++..+.+++....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 34444555544444433222222333334444444444445555554444433 22334444455555555555555555
Q ss_pred HHHHHh
Q 015246 299 LEYMNK 304 (410)
Q Consensus 299 ~~~~~~ 304 (410)
|++..+
T Consensus 699 ~~~a~~ 704 (886)
T KOG4507|consen 699 FRQALK 704 (886)
T ss_pred HHHHHh
Confidence 555544
No 382
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=75.13 E-value=33 Score=26.11 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=12.1
Q ss_pred HHHHHhcCChhHHHHHHHHHhc
Q 015246 73 MHCLFQLGKPDEANRVFQDMIC 94 (410)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~ 94 (410)
+-.|.+.|.+++|.+++++..+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3345555555555555555544
No 383
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.90 E-value=2.1 Score=35.64 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=66.7
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHH
Q 015246 42 TRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNAL 121 (410)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (410)
...|.++.|++.|...+..+ ++....|..-..++.+.+.+..|++=++..+..+ +.+..-|-.--.+....|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHH
Confidence 35677888888888877753 3456667777778888888888888887777654 333344444455555678888888
Q ss_pred HHHHHHHhCCCCCCHHHH
Q 015246 122 RMFRGLQKHGFVPELVTY 139 (410)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~ 139 (410)
..|....+.++.+....+
T Consensus 203 ~dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHHhccccHHHHHH
Confidence 888888887765554443
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.17 E-value=23 Score=23.48 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=10.0
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 015246 352 LCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~ 370 (410)
....|++++|...+++.++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 3445555555555555553
No 385
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=74.04 E-value=48 Score=27.22 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 015246 309 SNLEAYNCIVDRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (410)
-++.....+...|.+.|++.+|...|-..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 35677777888888888888887766433
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.56 E-value=11 Score=23.81 Aligned_cols=46 Identities=11% Similarity=-0.051 Sum_probs=25.2
Q ss_pred hcCChhhHHHHHHHHHHcCCCCc--HhhHHHHHHHHhhcCCHHHHHHH
Q 015246 354 KAKRLPSASKLLLSCLKSGVRIL--KSAQKAVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 399 (410)
...+.++|+..++..++.-..+. ..++..+..+|+..|+++++...
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665422221 23444555666666666665554
No 387
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.23 E-value=13 Score=23.43 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=18.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMG 61 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 61 (410)
+++..+.+..-.++|+++++-|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34566667777778888888887776
No 388
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=73.09 E-value=54 Score=27.39 Aligned_cols=43 Identities=9% Similarity=0.005 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 262 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
++|+.+.+.++.|.-..|..+...+.+.=.+.+.+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4666666666777777777766666666677777777777665
No 389
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.62 E-value=15 Score=20.67 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=16.3
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChHhHHHHH
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLM 73 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 73 (410)
+.|-.+++..++++|.+.|+.-+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555554444
No 390
>PRK10941 hypothetical protein; Provisional
Probab=72.40 E-value=35 Score=28.16 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=49.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCcHhhHHHHHHHH
Q 015246 314 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG-VRILKSAQKAVVDGL 387 (410)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~ 387 (410)
.+.+-.+|.+.++++.|+++.+.+..- ++.-+.--+-.|.+.|.+..|..-++..++.- -.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 344455778888888888888877655 45556666777888888888888888887652 223444444444433
No 391
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=72.34 E-value=73 Score=28.55 Aligned_cols=121 Identities=9% Similarity=0.001 Sum_probs=77.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANR 87 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 87 (410)
..|++-.|-+-+....+.. +.++.........+...|+++.+...+...... +.....+...+++...+.|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3566665554443333322 334444444455667788999998888776553 33456778888888889999999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC
Q 015246 88 VFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG 131 (410)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 131 (410)
+-+-|+...+. ++..........-..|-++++...|+++...+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88888876543 33333333333445677888888888887654
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=71.18 E-value=30 Score=23.70 Aligned_cols=28 Identities=18% Similarity=0.027 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
.-|..++..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4577788888888888888888888775
No 393
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=71.09 E-value=65 Score=27.49 Aligned_cols=107 Identities=10% Similarity=0.080 Sum_probs=66.1
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcC------------ChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHH
Q 015246 19 LNRMREAGISPDVVTYNSLIAGATRNS------------LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEAN 86 (410)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 86 (410)
|++..+.. |-|+.+|-.++..--..- -.+.-+.++++..+.+. .+......++..+.+..+.+...
T Consensus 8 l~~~v~~~-P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVREN-PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 33334333 567888888775433221 13455677777777643 46666777788888888888888
Q ss_pred HHHHHHhcCCCCCChhHHHHHHHHHhh---cCchHHHHHHHHHHH
Q 015246 87 RVFQDMICGDLTPCTATFNIMLNGLCK---NRYTDNALRMFRGLQ 128 (410)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 128 (410)
+.++++.... +-+...|...+..... .-.++....+|.+..
T Consensus 86 ~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 86 KKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 8888887764 4466777766665543 223455555555443
No 394
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.04 E-value=38 Score=24.72 Aligned_cols=50 Identities=22% Similarity=0.332 Sum_probs=27.1
Q ss_pred ChhHHHHHHHHHhhcCc-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015246 100 CTATFNIMLNGLCKNRY-TDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 149 (410)
Q Consensus 100 ~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (410)
+...|+.++.+...... .-.+..+|.-+.+.+.++++..|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34455555555544444 333455555555555556666666666655544
No 395
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=70.83 E-value=98 Score=29.40 Aligned_cols=186 Identities=12% Similarity=0.129 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHH-cCCCCC--HHHHHHHHHHHH-hcCChhhHHHHHHHHHHcCCCCChH-----hHHHHHHHHHhcCCh
Q 015246 12 FDAGYTILNRMRE-AGISPD--VVTYNSLIAGAT-RNSLLSCSLDLLDEMLEMGIPPDVW-----SYNSLMHCLFQLGKP 82 (410)
Q Consensus 12 ~~~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~ 82 (410)
+..|++.++.+.+ ...+|. ..++-.+...+. ...+++.|...+++.....-.++.. .-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 3446677777774 333333 235556666666 6789999999999876543222221 223456666666655
Q ss_pred hHHHHHHHHHhcCC----CCCChhHHHHH-HHHHhhcCchHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hcCCH
Q 015246 83 DEANRVFQDMICGD----LTPCTATFNIM-LNGLCKNRYTDNALRMFRGLQKHG---FVPELVTYNILIKGLC--KAGRL 152 (410)
Q Consensus 83 ~~a~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~ 152 (410)
. |...+++.++.- ..+-...+..+ +..+...++...|.+.++.+...- ..|....+-.++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 5 888888876542 11223333333 333333479999999999886532 2333444444444443 45656
Q ss_pred HHHHHHHHHHhhCC---------CCCcHHHHHHHHHHH--HhccchhHHHHHHHHHH
Q 015246 153 RTARWILKELGDSG---------HAPNAITYTTIMKCC--FRNRKYKLGLEILSAMK 198 (410)
Q Consensus 153 ~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 198 (410)
+++.+.++.+.... ..|...+|..++..+ ...|+++.+...++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777663211 234566777776644 56677767766665553
No 396
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=70.21 E-value=55 Score=26.28 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=49.4
Q ss_pred cCChhhHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh-hHHHHHHHHHhhcCchHHHH
Q 015246 44 NSLLSCSLDLLDEMLEMGIPPDV-WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT-ATFNIMLNGLCKNRYTDNAL 121 (410)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 121 (410)
..+++.|+.-|.+... +.|+. .-|..-+-++.+..+++.+..--.+.++. .||. -....+.........++.|+
T Consensus 23 ~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHH
Confidence 3445555554444443 23443 22334444555555555555444444433 2332 22233444444555555555
Q ss_pred HHHHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015246 122 RMFRGLQK----HGFVPELVTYNILIKGLCKAGRLRTARWILK 160 (410)
Q Consensus 122 ~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (410)
..+.+... ..+++.......|..+--..-...+..++.+
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q 141 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ 141 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence 55555422 2233333444444444333333444444433
No 397
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.18 E-value=3.6 Score=34.33 Aligned_cols=117 Identities=14% Similarity=-0.031 Sum_probs=81.8
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCChhhHH
Q 015246 286 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRLPSAS 362 (410)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~ 362 (410)
....|.++.|+..+...+..+ ++....|..-..++.+.+++..|++=+......++ ..|-.-..+....|++.+|.
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 456788999999999888863 55566666677888899999999888887766633 23444455556689999999
Q ss_pred HHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 363 KLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
..+....+.++.+....+ +-...-+.+..++-...+++.++
T Consensus 203 ~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 999999988877655543 33444555555555555544433
No 398
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.38 E-value=15 Score=32.16 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhc--C----CC-CCHHHHHHHHHHHHccCChHHHHHHHHh
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKI--G----FD-SNLEAYNCIVDRLGKDGKIDHAINVFES 336 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (410)
.+...+++..+-.|++..|+++++.+.-. + ++ -...++..+.-+|.-.+++.+|.+.|..
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777788889999998888765321 1 11 1244566677777777888888887753
No 399
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=68.21 E-value=71 Score=26.75 Aligned_cols=71 Identities=14% Similarity=0.267 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh----------cCchHHH
Q 015246 51 LDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK----------NRYTDNA 120 (410)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a 120 (410)
.++|+.+.+.++.|.-.+|.-+.-.+.+.=.+...+.+++.+.... .-|..|+..|+. .|++..-
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4678888888888888888777777777778888888888887532 225555555543 6788777
Q ss_pred HHHHHH
Q 015246 121 LRMFRG 126 (410)
Q Consensus 121 ~~~~~~ 126 (410)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 776654
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.43 E-value=41 Score=26.01 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=17.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015246 203 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 234 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (410)
.|+..+|..++.++...|+.++|.+...++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 401
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=66.01 E-value=1.4e+02 Score=29.29 Aligned_cols=225 Identities=10% Similarity=0.028 Sum_probs=118.3
Q ss_pred HHhhcCchHHHHHHHHHHHhCCCCCCHH-------HHHHHH-HHHHhcCCHHHHHHHHHHHhhC----CCCCcHHHHHHH
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGFVPELV-------TYNILI-KGLCKAGRLRTARWILKELGDS----GHAPNAITYTTI 177 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 177 (410)
......++++|..++.++...-..|+.. .++.+- ......|+++.+.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3445788899999888886642222211 233332 2344578888888887776553 222345566667
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHH-----HHHHHHcCCH--HHHHHHHHHHHHcC---CC---CChhhH
Q 015246 178 MKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTV-----IAAFVKIGRL--KEATDYMEQMVTDG---VQ---LDIVSY 244 (410)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~--~~a~~~~~~~~~~~---~~---~~~~~~ 244 (410)
..+..-.|++++|..+..+..+..-..+...+..+ ...+...|+. .+....+....... .+ +-..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 77778889999999888877765323333333322 2234556632 22333333332221 11 112333
Q ss_pred HHHHHHHHhcCCHHHHHHHH----HHHHhCCCCCchHH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCC----CHHHH
Q 015246 245 NTLINLYCKEGKLEAAYLLL----DEMEKQGFECDKYT--HTILIDGLCKAGNIKGARLHLEYMNKIGFDS----NLEAY 314 (410)
Q Consensus 245 ~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 314 (410)
..+..++.+ .+.+..-. .--......|-... +..++......|+.++|...++++......+ +....
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444444444 33322222 21112211221122 2356777788999999998888877542222 22222
Q ss_pred HHHH--HHHHccCChHHHHHHHHhh
Q 015246 315 NCIV--DRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 315 ~~l~--~~~~~~g~~~~A~~~~~~~ 337 (410)
...+ ......|+...+.....+-
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 2222 2335677777777666553
No 402
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=65.96 E-value=1e+02 Score=27.85 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=61.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHH--hcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 314 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC--KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
-+.++.-+...|-..+|...+..+... +...|..++..-. ..-+..-+...|+.|... +..|+..|...+.--.
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~~e~ 541 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMKEEL 541 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHHhhc
Confidence 355667777788888888888877655 4445555554322 122367778888888754 2367788888887777
Q ss_pred hcCCHHHHHHHHHHHH
Q 015246 389 HSGCRREAKKIQSKIR 404 (410)
Q Consensus 389 ~~g~~~~a~~~~~~~~ 404 (410)
..|..+.+-.++.++.
T Consensus 542 ~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 542 PLGRPENCGQIYWRAM 557 (568)
T ss_pred cCCCcccccHHHHHHH
Confidence 8888888777766553
No 403
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.14 E-value=1.1e+02 Score=29.86 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=34.8
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 015246 252 CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 331 (410)
...|+.+.|++.-..+- +..+|..|+......|+.+-|+..|++... |..|-..|.-.|+.++-.
T Consensus 654 Le~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 34455555544433221 444566666666666666666555555433 222333444455555554
Q ss_pred HHHHhh
Q 015246 332 NVFESM 337 (410)
Q Consensus 332 ~~~~~~ 337 (410)
++....
T Consensus 719 Km~~ia 724 (1202)
T KOG0292|consen 719 KMMKIA 724 (1202)
T ss_pred HHHHHH
Confidence 444433
No 404
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.13 E-value=17 Score=30.04 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHH
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT 138 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 138 (410)
-|+..|....+.||+++|+.++++..+.|..--..+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~t 294 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARST 294 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHH
Confidence 345677777777777777777777777766533333
No 405
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=64.27 E-value=54 Score=23.99 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=33.2
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG 325 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 325 (410)
+.+.+.+.|+++++. -..++..+...++.-.|..+++.+.+.+...+..|....+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445555554432 23445555555555667777777766555555555544555555544
No 406
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=64.23 E-value=54 Score=23.95 Aligned_cols=79 Identities=10% Similarity=0.139 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCC-----CCChHhHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCChhHHHHHH
Q 015246 35 NSLIAGATRNSLLSCSLDLLDEMLEMGI-----PPDVWSYNSLMHCLFQLGK-PDEANRVFQDMICGDLTPCTATFNIML 108 (410)
Q Consensus 35 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (410)
+.++...+..+++...+.+++.+..... ..+...|..++.+...... --.+..+|+-+.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444455555555555555532110 1123345555555543333 223344455554444455555555555
Q ss_pred HHHhh
Q 015246 109 NGLCK 113 (410)
Q Consensus 109 ~~~~~ 113 (410)
.++.+
T Consensus 123 ~~~l~ 127 (145)
T PF13762_consen 123 KAALR 127 (145)
T ss_pred HHHHc
Confidence 55443
No 407
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.19 E-value=24 Score=19.83 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=28.2
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHH
Q 015246 351 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 385 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 385 (410)
...+.|-.+++..++++|.+.|+..++..+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34567888899999999999999888888877664
No 408
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.82 E-value=26 Score=20.23 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=10.2
Q ss_pred HHHHHHccCChHHHHHHHHhhc
Q 015246 317 IVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
+.-++.+.|++++|.+..+.+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL 28 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALL 28 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHH
Confidence 3344455555555555554443
No 409
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.47 E-value=1.1e+02 Score=27.14 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=41.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHhhccC-----------CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 314 YNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
...+++..+-.||+..|+++++.+.-. ...++..++-+|.-.+++.+|++.|...+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777888888888888765422 55667777888888888888888888765
No 410
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=63.16 E-value=74 Score=25.20 Aligned_cols=28 Identities=7% Similarity=-0.062 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 345 YSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 345 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
...++....+.|+.++|.+.|.+++..+
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3445566677899999999998888654
No 411
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.61 E-value=41 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=9.5
Q ss_pred HHHHHHccCChHHHHHHHHhh
Q 015246 317 IVDRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~ 337 (410)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444443
No 412
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=62.42 E-value=18 Score=29.92 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=17.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIP 63 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 63 (410)
|+..|....+.||+++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345566666666666666666666665544
No 413
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.59 E-value=53 Score=26.71 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcC-----CCCCChhHHHHHHHHHhhcCchHHHHHHHHHH
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICG-----DLTPCTATFNIMLNGLCKNRYTDNALRMFRGL 127 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (410)
-..+..-|...|++++|.++|+.+... -..+...+...+..++...|+.+..+.+--++
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345666777778888888887776432 12345556666777777778777776665444
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.90 E-value=15 Score=26.19 Aligned_cols=19 Identities=37% Similarity=0.625 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHcCCCCC
Q 015246 47 LSCSLDLLDEMLEMGIPPD 65 (410)
Q Consensus 47 ~~~a~~~~~~~~~~~~~~~ 65 (410)
-.+|..+|+.|+++|-+||
T Consensus 111 k~DaY~VF~kML~~G~pPd 129 (140)
T PF11663_consen 111 KTDAYAVFRKMLERGNPPD 129 (140)
T ss_pred CCcHHHHHHHHHhCCCCCc
Confidence 3344445555555444443
No 415
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.44 E-value=58 Score=23.10 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHcCCCCc-HhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 358 LPSASKLLLSCLKSGVRIL-KSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 358 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
.+++.++|+.|..+|+-.. +..|...+..+...|++++|.++++.-
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3488888888888776553 566677777788899999999888753
No 416
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=59.95 E-value=1.3e+02 Score=26.87 Aligned_cols=59 Identities=19% Similarity=0.314 Sum_probs=46.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 314 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
...|+.-|...|+..+|.+++.++--+ +...+.+++.+.-+.|+-...+.+++.+...|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 456778888899999999999888776 55677788888888888777777777776554
No 417
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.86 E-value=15 Score=32.45 Aligned_cols=103 Identities=13% Similarity=-0.068 Sum_probs=71.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH-HHHHHHccCChHHHHHHHHhhccCCc---hhHHHHHHHHHhcCCh
Q 015246 283 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC-IVDRLGKDGKIDHAINVFESMEVKDS---FTYSSMVHNLCKAKRL 358 (410)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 358 (410)
+..+...+.++.|..++.++++. .||...|.. -..++.+.+++..|+.=+..+.+.++ ..|..-..++...+++
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 44556778899999999999984 566544433 33778888999988887777776643 2344445667777788
Q ss_pred hhHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 015246 359 PSASKLLLSCLKSGVRILKSAQKAVVDGLRH 389 (410)
Q Consensus 359 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (410)
.+|...|+.... +.|+...+...+.-|..
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 888888888764 47777666666655543
No 418
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=59.76 E-value=51 Score=22.22 Aligned_cols=59 Identities=12% Similarity=0.006 Sum_probs=30.7
Q ss_pred HHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhH
Q 015246 319 DRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQ 380 (410)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 380 (410)
..+...|+|++|..+.+....+|...|..+. -.+.|-.+++...+.++-..| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3455666666666666655444555444432 234555555555555555554 4433333
No 419
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=59.52 E-value=49 Score=21.88 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=25.0
Q ss_pred hhcCChHHHHHHHHHHHH----cCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 7 CQFVSFDAGYTILNRMRE----AGISPD----VVTYNSLIAGATRNSLLSCSLDLLDEMLE 59 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 59 (410)
.+.|++..|.+.+.+... .+..+. ....-.+.......|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777555444432 221110 11222233444555666666666666544
No 420
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=59.07 E-value=1.4e+02 Score=27.09 Aligned_cols=71 Identities=10% Similarity=-0.040 Sum_probs=46.5
Q ss_pred HHHhhccCCch-hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH---hhcCCHHHHHHHHHHHHH
Q 015246 333 VFESMEVKDSF-TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL---RHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 333 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~ 405 (410)
.+..+...+.. .-+.++..+.+.|-..+|...+..+... .||+...+..++..- ..+| ...++.+++.+..
T Consensus 450 a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~ 524 (568)
T KOG2396|consen 450 ALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALR 524 (568)
T ss_pred HHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHH
Confidence 33334444333 3455667777888899999999999876 366777777776543 2233 6777777777654
No 421
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=58.91 E-value=36 Score=30.25 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=22.4
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 015246 41 ATRNSLLSCSLDLLDEMLEMGIPPDV-WSYNSLMHCLFQLGKPDEANRVFQDMIC 94 (410)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 94 (410)
+...+.++.|..++.+..+. .|+. ..|..-..++.+.+++..|+.=+..+++
T Consensus 14 ~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie 66 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIE 66 (476)
T ss_pred hcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhh
Confidence 33444555555555555442 2322 2222222444455555555444444443
No 422
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.29 E-value=58 Score=22.36 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=16.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhc
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMIC 94 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 94 (410)
|..|+..|...|..++|.+++.++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666666554
No 423
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=58.26 E-value=1.1e+02 Score=25.54 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHH
Q 015246 221 RLKEATDYMEQMVTDGVQLDIVSYN 245 (410)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (410)
+...|...+......+.........
T Consensus 252 ~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 252 DKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHH
Confidence 5666666666666655544444443
No 424
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.14 E-value=63 Score=27.42 Aligned_cols=93 Identities=16% Similarity=-0.031 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-CC--CHHHHHHHHHHHHccCChHHHHHHHHhhccCCch---hHHHHHH
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKIGF-DS--NLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSF---TYSSMVH 350 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~ 350 (410)
..|.-=..-|.+..++..|...|.+-++... .| +...|+.-..+-...|++..|+.=.......++. .|..-..
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 4566666777888888888888888776432 12 2344444444555667777777776666665444 3444455
Q ss_pred HHHhcCChhhHHHHHHHHH
Q 015246 351 NLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~ 369 (410)
++....++.+|..+.++..
T Consensus 162 c~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 6777888888888777764
No 425
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=58.06 E-value=25 Score=27.90 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 321 LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
..+.++.+.|.+++.+.... ....|..+...--+.|+++.|.+.|++.++.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 44556666666666666554 44556666666666666666666666666543
No 426
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.29 E-value=17 Score=25.84 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=19.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 015246 288 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 320 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (410)
..|.-.+|..+|++|++.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34556667777777777776665 35555543
No 427
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=57.12 E-value=2.3e+02 Score=29.35 Aligned_cols=25 Identities=16% Similarity=0.008 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDL 53 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~ 53 (410)
+....|..+...+-+.++.++|...
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~ 995 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQ 995 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHh
Confidence 3344555555555555665555544
No 428
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=56.62 E-value=54 Score=21.54 Aligned_cols=53 Identities=19% Similarity=0.101 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcC
Q 015246 28 SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPP-DVWSYNSLMHCLFQLG 80 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 80 (410)
+.|....-.+...+...|+++.|++.+-.+.+..... +...-..++..+...|
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 3445555556666666666666666666665543222 2333344444444433
No 429
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.57 E-value=1.5e+02 Score=26.44 Aligned_cols=208 Identities=14% Similarity=0.143 Sum_probs=96.9
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChH--hHHHHHHHHHhcCCh
Q 015246 7 CQFVSFDAGYTILNRMREAGISPDVVT--YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVW--SYNSLMHCLFQLGKP 82 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~ 82 (410)
++.|+.+- ++.+.+.|..|+... -.+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 44566544 444455665555432 223444555667765 344445555544422 122345566678888
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT--YNILIKGLCKAGRLRTARWILK 160 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~ 160 (410)
+.+..+++.-....-..+..- .+.+...+..|+. ++++.+.+.|..|+... -.+.+...+..|+.+-+..+++
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDG-MTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred HHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 776666653211100011111 1223334455654 34555555665554321 1233445566777766555554
Q ss_pred HHhhCCCCCc---HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhh---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015246 161 ELGDSGHAPN---AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFG---YCTVIAAFVKIGRLKEATDYMEQMVT 234 (410)
Q Consensus 161 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (410)
. |..++ ..-.+. +......|+.+ +.+.+.+.|..++... ....+......|+.+- .+.+.+
T Consensus 157 ~----g~~~~~~d~~g~Tp-L~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~ 223 (413)
T PHA02875 157 H----KACLDIEDCCGCTP-LIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIK 223 (413)
T ss_pred c----CCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHH
Confidence 3 32222 112222 23334456644 4455556665544321 1234443455666543 444455
Q ss_pred cCCCCC
Q 015246 235 DGVQLD 240 (410)
Q Consensus 235 ~~~~~~ 240 (410)
.|..++
T Consensus 224 ~gad~n 229 (413)
T PHA02875 224 RGADCN 229 (413)
T ss_pred CCcCcc
Confidence 555554
No 430
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.96 E-value=1.4e+02 Score=26.21 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 015246 70 NSLMHCLFQLGKPDEANRVFQD 91 (410)
Q Consensus 70 ~~l~~~~~~~~~~~~a~~~~~~ 91 (410)
.-+...|...|+++.|++.|.+
T Consensus 154 ~Dl~dhy~~cG~l~~Alr~YsR 175 (466)
T KOG0686|consen 154 EDLGDHYLDCGQLDNALRCYSR 175 (466)
T ss_pred HHHHHHHHHhccHHHHHhhhhh
Confidence 3344444445555555555444
No 431
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=55.61 E-value=21 Score=18.01 Aligned_cols=26 Identities=4% Similarity=-0.143 Sum_probs=19.5
Q ss_pred ChhhHHHHHHHHHHcCCCCcHhhHHHHH
Q 015246 357 RLPSASKLLLSCLKSGVRILKSAQKAVV 384 (410)
Q Consensus 357 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 384 (410)
.++.|..+|++.+.. .|+..+|...+
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 467889999998854 68888776554
No 432
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=55.15 E-value=29 Score=18.02 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=8.6
Q ss_pred HHHHHHhhcCCHHHHHHH
Q 015246 382 AVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 382 ~l~~~~~~~g~~~~a~~~ 399 (410)
.+...+...|++++|..+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 334444555555555555
No 433
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.73 E-value=79 Score=22.83 Aligned_cols=23 Identities=4% Similarity=-0.051 Sum_probs=11.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 015246 248 INLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
.-++.+.++++.+.++.+.+.+.
T Consensus 78 Avg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 78 AVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhh
Confidence 33445555555555555554443
No 434
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.30 E-value=1.4e+02 Score=28.22 Aligned_cols=47 Identities=19% Similarity=0.094 Sum_probs=23.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCCh
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMG--IPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+++.+|..+|++-++.++++.+...+ -..-...+|..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 45556666666666666665555431 111123345555555555543
No 435
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=54.26 E-value=1.3e+02 Score=28.37 Aligned_cols=91 Identities=14% Similarity=0.166 Sum_probs=59.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCC--CCCChhHHHHHHHHHhhcCchH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 015246 71 SLMHCLFQLGKPDEANRVFQDMICGD--LTPCTATFNIMLNGLCKNRYTD------NALRMFRGLQKHGFVPELVTYNIL 142 (410)
Q Consensus 71 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 142 (410)
+|+.+|...|++-.+.++++.....+ -+.-...+|..++...+.|.++ .|.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887653 2333567888888888888654 3444444443 44577788877
Q ss_pred HHHHHhcCCHHHHHHHHHHHhh
Q 015246 143 IKGLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~ 164 (410)
+.+....-+-.-..-++.++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7665543333333344444433
No 436
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.25 E-value=2.1e+02 Score=27.63 Aligned_cols=118 Identities=11% Similarity=0.055 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHcCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh----------hHHHHHHHHHhcC
Q 015246 189 LGLEILSAMKRKGYTFD---GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV----------SYNTLINLYCKEG 255 (410)
Q Consensus 189 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~ 255 (410)
+-...+.+|...--.|+ ..+...++-.|....+++...++.+.+... ||.. .|...+.--.+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 33445566655422333 344556666677777777777777777653 2211 1111122222346
Q ss_pred CHHHHHHHHHHHHhCC--CCCchH-----HHHHHH--HHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 015246 256 KLEAAYLLLDEMEKQG--FECDKY-----THTILI--DGLCKAGNIKGARLHLEYMNKIGFDSNL 311 (410)
Q Consensus 256 ~~~~a~~~~~~~~~~~--~~~~~~-----~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 311 (410)
+-++|+...-.+.+.. +.||.. .|..+. ..|...+..+.|..+|++.-+ +.|+.
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~ 320 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLE 320 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchh
Confidence 6677777666665432 344432 122211 223445566777888877765 34543
No 437
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.19 E-value=1.1e+02 Score=24.54 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=16.2
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCC
Q 015246 178 MKCCFRNRKYKLGLEILSAMKRKGY 202 (410)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (410)
.......+++.+|+++|++......
T Consensus 161 A~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 161 AQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556777778888777766543
No 438
>PHA02875 ankyrin repeat protein; Provisional
Probab=54.06 E-value=1.6e+02 Score=26.17 Aligned_cols=212 Identities=15% Similarity=0.090 Sum_probs=100.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCcHHH--HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChh--hHHHHHHHHHHc
Q 015246 144 KGLCKAGRLRTARWILKELGDSGHAPNAIT--YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF--GYCTVIAAFVKI 219 (410)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 219 (410)
...+..|+.+.+..++ +.|..|+... ..+.+..+...|+.+ +.+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3445567776655554 4566665432 233445556677765 445555566544322 122345556677
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHhcCChhHHH
Q 015246 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY---THTILIDGLCKAGNIKGAR 296 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~ 296 (410)
|+.+.+..+++.-.......+..-. ..+...+..|+.+ +++.+.+.|..|+.. -.+. +...+..|+.+-+.
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~ 152 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIE 152 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHH
Confidence 8887766555432111001111112 2233344566654 444445555544322 1222 33344567765544
Q ss_pred HHHHHHHhcCCCCC---HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 297 LHLEYMNKIGFDSN---LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 297 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
.++ +.|..++ ..-.+ .+...+..|+.+-+..+++.-... +.......+...+..|+. ++.+-+++
T Consensus 153 ~Ll----~~g~~~~~~d~~g~T-pL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~iv~~Ll~ 223 (413)
T PHA02875 153 LLI----DHKACLDIEDCCGCT-PLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DIVRLFIK 223 (413)
T ss_pred HHH----hcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HHHHHHHH
Confidence 443 4443332 11122 233344567777666666544333 212122333333455654 35555666
Q ss_pred cCCCCcHh
Q 015246 371 SGVRILKS 378 (410)
Q Consensus 371 ~~~~~~~~ 378 (410)
.|..++..
T Consensus 224 ~gad~n~~ 231 (413)
T PHA02875 224 RGADCNIM 231 (413)
T ss_pred CCcCcchH
Confidence 67777643
No 439
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=53.92 E-value=75 Score=22.32 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=9.0
Q ss_pred HHhhcCCHHHHHHHHHH
Q 015246 386 GLRHSGCRREAKKIQSK 402 (410)
Q Consensus 386 ~~~~~g~~~~a~~~~~~ 402 (410)
++...|+.++|...|+.
T Consensus 109 Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 109 ALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHTT-HHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHH
Confidence 34456666666665543
No 440
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.82 E-value=1.4e+02 Score=25.38 Aligned_cols=112 Identities=11% Similarity=-0.005 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 015246 12 FDAGYTILNRMREAGI----SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANR 87 (410)
Q Consensus 12 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 87 (410)
.+.|.+.|+.....+. ..++.....++....+.|+.+....+++..... ++......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHH-hhcCchHHHHHHHHH
Q 015246 88 VFQDMICGDLTPCTATFNIMLNGL-CKNRYTDNALRMFRG 126 (410)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~ 126 (410)
+++.+...+.-++......+.... ......+.+.+.+..
T Consensus 223 ~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 441
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.49 E-value=1.9e+02 Score=26.87 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=31.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HccCChHHHHHHHHhhc
Q 015246 284 DGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL-GKDGKIDHAINVFESME 338 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 338 (410)
+.+.+.|-+..|.++.+.+.+....-|+.....+|+.| .+..+++--+++++...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34456666677777666666654333455555555554 34555666666666553
No 442
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=52.23 E-value=1.3e+02 Score=24.69 Aligned_cols=63 Identities=10% Similarity=0.031 Sum_probs=35.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC-CCC-----cHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 347 SMVHNLCKAKRLPSASKLLLSCLKSG-VRI-----LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 347 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
.+...|.+.|+.+.|-.++--+...+ ... +...-..++......|+|+-+.++.+-++..+++
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~ 252 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPE 252 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence 34444555555555555444433222 111 2333345566667788888888888877776654
No 443
>PRK09462 fur ferric uptake regulator; Provisional
Probab=51.60 E-value=94 Score=22.78 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-CChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 21 RMREAGISPDVVTYNSLIAGATRN-SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
.+.+.|.+.+.. -..++..+... +..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 7 ~l~~~glr~T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445566554443 33455555554 46778888888888877666666666666777766644
No 444
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.13 E-value=58 Score=22.73 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCC
Q 015246 346 SSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 346 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 34566667777788899999999888777777777777777777663
No 445
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.00 E-value=68 Score=20.97 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=13.6
Q ss_pred CChHHHHHHHHhhccCCchhHHHHHHHHHhcC
Q 015246 325 GKIDHAINVFESMEVKDSFTYSSMVHNLCKAK 356 (410)
Q Consensus 325 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 356 (410)
|+.+.|.+++..+. ..+..|...+.++...|
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~ 80 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETE 80 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcC
Confidence 44444444444444 44444444444444433
No 446
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.00 E-value=78 Score=21.69 Aligned_cols=78 Identities=13% Similarity=0.015 Sum_probs=30.5
Q ss_pred ChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHH
Q 015246 46 LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFR 125 (410)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 125 (410)
..++|..+.+.+...+.. ...+--.-+..+...|++++| +..-... ..||...|..|. -.+.|.-+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~--a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALC--AWKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHH--HHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHH--HHhhccHHHHHHHHH
Confidence 345555555555544221 111111222334455566655 1111111 145555554432 234555555555555
Q ss_pred HHHhC
Q 015246 126 GLQKH 130 (410)
Q Consensus 126 ~~~~~ 130 (410)
++...
T Consensus 94 rla~~ 98 (116)
T PF09477_consen 94 RLASS 98 (116)
T ss_dssp HHCT-
T ss_pred HHHhC
Confidence 55444
No 447
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=50.89 E-value=2.8e+02 Score=28.04 Aligned_cols=178 Identities=8% Similarity=0.023 Sum_probs=94.3
Q ss_pred cchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCh--------hhHHHHHHHHH
Q 015246 185 RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQLDI--------VSYNTLINLYC 252 (410)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~--------~~~~~l~~~~~ 252 (410)
|..---.++++++.+. +|-.+.....-+.+..|.++-+.+..+.+.+. ..+.+. ..|-.-+.++.
T Consensus 670 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (932)
T PRK13184 670 GFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALS 746 (932)
T ss_pred cCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444455566665544 23355555555667888888777776666542 111111 11222244455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChH
Q 015246 253 KEGKLEAAYLLLDEMEKQGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN--LEAYNCIVDRLGKDGKID 328 (410)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 328 (410)
...+++++.+.+... +|. ...+..++.-+...++.+......+.+.+.-.+.. ......-+.+|.-..+++
T Consensus 747 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 821 (932)
T PRK13184 747 NKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLK 821 (932)
T ss_pred ccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHH
Confidence 555566665533322 222 22334444444455666666666666655422221 123345567888888999
Q ss_pred HHHHHHHhhccC-----CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 329 HAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 329 ~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
.|-+++...... ....+...+.-++-.++.+.|...|..+.+
T Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 822 KAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred HHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 999998766554 222333333333456666777777776663
No 448
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=50.56 E-value=1.1e+02 Score=23.17 Aligned_cols=57 Identities=5% Similarity=-0.038 Sum_probs=31.5
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC----CchhHHHHHHHHHhcCChh
Q 015246 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK----DSFTYSSMVHNLCKAKRLP 359 (410)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~ 359 (410)
+.+.|+.++..-. .++..+...++.-.|.++++.+.+. +..+...-+..+...|-..
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 4455666554333 3444444455666777777777654 3444444455666666544
No 449
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=50.50 E-value=1.3e+02 Score=24.20 Aligned_cols=124 Identities=15% Similarity=0.225 Sum_probs=60.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 015246 143 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 222 (410)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (410)
+..|...-++.-|....+++.+ | ..+-..++ -|.+..+-+--.++.+-....+++.+......++ +...||.
T Consensus 137 MEiyS~ttRFalaCN~s~KIiE----P-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIE----P-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHcccchhhhhhcchhhhhh----h-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Confidence 4455555555555444444433 1 11111111 2333333333333444444445555555554443 4567777
Q ss_pred HHHHHHHHHHHHc-C-----------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 015246 223 KEATDYMEQMVTD-G-----------VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 275 (410)
Q Consensus 223 ~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 275 (410)
.+|...++.-... | -.|.+.....++..+ ..+++++|.+++.++.+.|..|.
T Consensus 209 RQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 209 RQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 7777776655432 0 134444445555433 33456677777777666665543
No 450
>PRK13342 recombination factor protein RarA; Reviewed
Probab=50.44 E-value=1.9e+02 Score=25.89 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=9.3
Q ss_pred cCchHHHHHHHHHHHh
Q 015246 114 NRYTDNALRMFRGLQK 129 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~ 129 (410)
.|+...++.+++.+..
T Consensus 187 ~Gd~R~aln~Le~~~~ 202 (413)
T PRK13342 187 NGDARRALNLLELAAL 202 (413)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5666666666665543
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.21 E-value=3e+02 Score=28.27 Aligned_cols=127 Identities=9% Similarity=-0.074 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHhhccC--CchhHHHHHHH
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK--DSFTYSSMVHN 351 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~ 351 (410)
-|..+++.+...+-.+.+.++-..+++. .+++ ..+++.+.+-....|.+-+|...+-+.... .......++..
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 3666777777888888888777776654 2332 345666777777888888887776555443 33456666666
Q ss_pred HHhcCChh------------hHHH-HHHHHHHcCCCCcHhhHHHHHHH-HhhcCCHHHHHHH-HHHHHHc
Q 015246 352 LCKAKRLP------------SASK-LLLSCLKSGVRILKSAQKAVVDG-LRHSGCRREAKKI-QSKIRMA 406 (410)
Q Consensus 352 ~~~~~~~~------------~A~~-~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~-~~~~~~~ 406 (410)
++..|.++ +... +++..-+. .+.....|..++.+ +...+++.+|-.+ |+...+.
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 66666644 3333 22222222 23333344445444 5777777776554 4544443
No 452
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=50.14 E-value=61 Score=20.20 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=16.5
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCK 113 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (410)
+.+.|..++..+.... +.++..||++...+.+
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~R 43 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLDR 43 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHHH
Confidence 3455555555554433 4555666655554443
No 453
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.90 E-value=65 Score=22.22 Aligned_cols=46 Identities=7% Similarity=0.024 Sum_probs=26.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 37 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
++..+...+..-.|.++++.+.+.+...+..|....++.+...|-.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4444445555556666666666665555555555555556655543
No 454
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=49.84 E-value=74 Score=21.96 Aligned_cols=41 Identities=17% Similarity=0.141 Sum_probs=19.0
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC
Q 015246 351 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 391 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (410)
.+...+..-.|.++++++.+.+..++..|....+..+...|
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 33333444455555555554444444444444444444444
No 455
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.80 E-value=31 Score=16.50 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=13.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 015246 10 VSFDAGYTILNRMREAGISPDVVTYNSLI 38 (410)
Q Consensus 10 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 38 (410)
|+++.|..+|+++.... +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 34556666666665542 23444444433
No 456
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=48.62 E-value=60 Score=19.80 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMG 61 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 61 (410)
...++.++..+++..-.++++..+.+..+.|
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344444444444444444444444444443
No 457
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=47.34 E-value=62 Score=19.46 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=31.2
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHH-----HhhcCCHHHHHHHH
Q 015246 351 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG-----LRHSGCRREAKKIQ 400 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~ 400 (410)
.+...|++-+|-++++.+-.....|....+..++.. ..+.|+...|.+++
T Consensus 8 ~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 8 ELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 455678888888888888754333445555555443 35678888877664
No 458
>PRK09857 putative transposase; Provisional
Probab=47.04 E-value=1.7e+02 Score=24.57 Aligned_cols=68 Identities=12% Similarity=0.133 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC
Q 015246 67 WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE 135 (410)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 135 (410)
..+..++......++.++..++++.+.+. .++.....-++..-+...|.-+++.++..+|...|+.++
T Consensus 207 ~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 207 RQIKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33556666666777777777777766654 233344444566677777777788888899988887654
No 459
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=46.73 E-value=3.6e+02 Score=28.07 Aligned_cols=102 Identities=13% Similarity=0.134 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------hCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc-----
Q 015246 133 VPELVTYNILIKGLCKAGRLRTARWILKELG-------DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK----- 200 (410)
Q Consensus 133 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 200 (410)
++....|..+...+.+.++.++|+..-.... ......+...|..+...+...+....|...+.+....
T Consensus 970 ~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ 1049 (1236)
T KOG1839|consen 970 PEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSS 1049 (1236)
T ss_pred hhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcccc
Confidence 3345566677777777777777766544431 1112223344444544455555666666555554432
Q ss_pred C--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015246 201 G--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 234 (410)
Q Consensus 201 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (410)
| .|+...+++.+-..+...++.+.|.+.++.+.+
T Consensus 1050 ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1050 GEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 1 122233333333333444566666666665554
No 460
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=46.51 E-value=48 Score=20.86 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=26.1
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 015246 353 CKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 389 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (410)
...++.+.+.+++++....|.+|.......+..+..+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4578899999999999988877776655545444433
No 461
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.10 E-value=3.3e+02 Score=27.55 Aligned_cols=125 Identities=12% Similarity=-0.004 Sum_probs=64.2
Q ss_pred CChhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 015246 239 LDIVSYNTLINLYCKEGKLEA-AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCI 317 (410)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 317 (410)
++..+-...+.++...+..+. +...+..+.. .++...-...+.++...|....+...+..+.+ .++..+-...
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHH
Confidence 345555555556655554332 2333444432 23555566666666666665444334444443 2344455556
Q ss_pred HHHHHccCChHHHHHHHH-hhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 318 VDRLGKDGKIDHAINVFE-SMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
+.++...+..+ +...+. .+..++...-...+.++.+.+....+...+..+++
T Consensus 828 a~aL~~l~~~~-a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 828 ARALAGAAADV-AVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhccccc-hHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66666665533 333333 33334555556666666665334456666666654
No 462
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.86 E-value=85 Score=20.64 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=8.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~ 233 (410)
.+...+...|++++|.+.+-.+.
T Consensus 27 ~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 27 ALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 33333444444444444443333
No 463
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=45.84 E-value=83 Score=20.49 Aligned_cols=43 Identities=14% Similarity=0.106 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015246 122 RMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (410)
++|+-....|+..|+..|..++....-.=.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5555556666666666666666655555555555566655543
No 464
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=45.32 E-value=1.3e+02 Score=22.70 Aligned_cols=61 Identities=11% Similarity=0.024 Sum_probs=37.3
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 22 MREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
+.+.|++.+..- ..++..+...++.-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 445565444432 3455555556666778888888877776666666555666666666443
No 465
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.62 E-value=1.7e+02 Score=23.68 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=20.6
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 015246 341 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 376 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 376 (410)
++.....++..| ..+++++|.+.+.++.+.|+.|.
T Consensus 238 hP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 238 HPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred ChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 334444444433 34567777777777777776664
No 466
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=44.31 E-value=2.6e+02 Score=25.72 Aligned_cols=95 Identities=12% Similarity=0.013 Sum_probs=45.4
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
|.....+++..+.....++-...+..+|...| .+...+..++++|... ..++-..+++++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445555555555555555555555555442 3444555555555554 345555555555554332 2222233333
Q ss_pred HHHhcCCHHHHHHHHHHHhh
Q 015246 145 GLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~ 164 (410)
.|-+ ++...+...|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3333 455555555555443
No 467
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.02 E-value=2.8e+02 Score=26.13 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=16.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHH
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQD 91 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~ 91 (410)
.|=..+..+.-.|.++.|.+++..
T Consensus 150 ~FW~~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 150 DFWDYVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHH-T
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHh
Confidence 344467778888889988888844
No 468
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=43.59 E-value=1.1e+02 Score=21.39 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
-..++..+...+..-.|.++++.+.+.+...+..|.-.-+..+...|-.
T Consensus 10 R~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 10 RLAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 3455666666666777788888887776666666655566666666543
No 469
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.57 E-value=1.5e+02 Score=22.95 Aligned_cols=179 Identities=13% Similarity=0.111 Sum_probs=0.0
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCC----ChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 24 EAGISPDVVTYNSLIAGATR----NSLLSCSLDLLDEMLEMGIPP----DVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
+.|.-++...++.++..+.+ .+..+-+..+=.+....++.+ +......-+..|-..|||.+.-.+|-.+.
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~-- 78 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK-- 78 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH--
Q ss_pred CCCCChhHHHHHHHHHhhcCchHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc
Q 015246 96 DLTPCTATFNIMLNGLCKNRYTDN-----ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 170 (410)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (410)
.++-+.+++.+ |..+.++..+. ....|....+.-++.-+-+++.+.+ =
T Consensus 79 -------------~gce~~~dlq~~~~~va~~Ltkd~Kdk----~~vPFceFAetV~k~~q~~e~dK~~----------L 131 (233)
T PF14669_consen 79 -------------MGCEKFADLQRFCACVAEALTKDSKDK----PGVPFCEFAETVCKDPQNDEVDKTL----------L 131 (233)
T ss_pred -------------hhcCCHHHHHHHHHHHHHHHHhccccc----CCCCHHHHHHHHhcCCccchhhhhh----------h
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHc--------------CCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 015246 171 AITYTTIMKCCFRNRKYKLGLEILSAMKRK--------------GYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 231 (410)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 231 (410)
..+--+++..|.+..+|.+..++++.+.+. +..+.-...+.....+.+.|.++.|..++++
T Consensus 132 GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 132 GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 470
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=43.46 E-value=91 Score=20.31 Aligned_cols=44 Identities=20% Similarity=0.303 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 52 DLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
++|+-....|+..|+..|..++......=-++...+++..|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 66666666677777777777777666666666667777666543
No 471
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=43.24 E-value=1.8e+02 Score=23.56 Aligned_cols=166 Identities=11% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH-hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL-CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 147 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (410)
+..++...-..|+++++.+.+.++...+...+..-.+.+..+| ..-|....+.+++..+......-.......++.-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Q ss_pred h--cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc-----------------hhHHHHHHHHHHHc---CCCCC
Q 015246 148 K--AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK-----------------YKLGLEILSAMKRK---GYTFD 205 (410)
Q Consensus 148 ~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~---~~~~~ 205 (410)
+ ...+.....-+-.+.+..+.|....-...+..+-..|| .+.|.+.|+..... .++|.
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Q ss_pred hhhHHHHHHHHH-----HcCCHHHHHHHHHHHHH
Q 015246 206 GFGYCTVIAAFV-----KIGRLKEATDYMEQMVT 234 (410)
Q Consensus 206 ~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~ 234 (410)
..++..++--|+ ..|+.++|.++.+....
T Consensus 164 ~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 164 HPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp SHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
No 472
>PF07827 KNTase_C: KNTase C-terminal domain; InterPro: IPR012481 Kanamycin nucleotidyltransferase (KNTase) is involved in conferring resistance to aminoglycoside antibiotics and catalyses the transfer of a nucleoside monophosphate group from a nucleotide to kanamycin. This enzyme is dimeric with each subunit being composed of two domains. The C-terminal domain contains five alpha helices, four of which are organised into an up-and-down alpha helical bundle. Residues found in this domain may contribute to this enzyme's active site []. ; GO: 0016779 nucleotidyltransferase activity, 0046677 response to antibiotic; PDB: 1KNY_A.
Probab=43.16 E-value=1.1e+02 Score=22.19 Aligned_cols=15 Identities=7% Similarity=-0.062 Sum_probs=6.0
Q ss_pred CCchHHHHHHHHHHH
Q 015246 273 ECDKYTHTILIDGLC 287 (410)
Q Consensus 273 ~~~~~~~~~l~~~~~ 287 (410)
.|+..++...+....
T Consensus 15 ~~~~e~f~~ai~e~l 29 (143)
T PF07827_consen 15 SPESEEFRQAIREFL 29 (143)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHH
Confidence 345555555554443
No 473
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.69 E-value=2.4e+02 Score=24.94 Aligned_cols=62 Identities=8% Similarity=0.018 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 234 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (410)
.+.-+...|...|+++.|++.+.+..+-- ..-....+..++..-.-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 34445556666666666666666644321 011122333444444555666666666555554
No 474
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.63 E-value=2.7e+02 Score=25.41 Aligned_cols=361 Identities=12% Similarity=0.026 Sum_probs=189.5
Q ss_pred hhcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHHhcC-ChhhHHHHHHHHHHcC--CC-CChHhHHHHHHHH
Q 015246 7 CQFVSFDAGYTILNRMREAG-ISPDV-----VTYNSLIAGATRNS-LLSCSLDLLDEMLEMG--IP-PDVWSYNSLMHCL 76 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~--~~-~~~~~~~~l~~~~ 76 (410)
....+++.|..-++..-... .-|+. .++..+...+.... .+..+..++++..+.. ++ ..-.....|+..+
T Consensus 58 ~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~ 137 (629)
T KOG2300|consen 58 RYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLH 137 (629)
T ss_pred HHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Confidence 34566777777766654221 11222 35566677777665 7888888888887642 21 1122233456667
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH------hh---cCchHHHHHHHHHHHhCCCCCCHHH--------H
Q 015246 77 FQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL------CK---NRYTDNALRMFRGLQKHGFVPELVT--------Y 139 (410)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~------~~---~~~~~~a~~~~~~~~~~~~~~~~~~--------~ 139 (410)
.-..++..|.+++.---... .+-...|..++..+ .. ..+...+.....++.+. ..+|... .
T Consensus 138 ~idkD~~sA~elLavga~sA-d~~~~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl 215 (629)
T KOG2300|consen 138 IIDKDFPSALELLAVGAESA-DHICFPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYL 215 (629)
T ss_pred hhhccchhHHHHHhcccccc-chhhhHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHH
Confidence 77888888888854322211 22223333222222 22 23444555555556554 4445432 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC---CC------------CCcHHHHHHHHH-------------HHHhccchhHHH
Q 015246 140 NILIKGLCKAGRLRTARWILKELGDS---GH------------APNAITYTTIMK-------------CCFRNRKYKLGL 191 (410)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~------------~~~~~~~~~l~~-------------~~~~~~~~~~a~ 191 (410)
+.-+..|...|+...+...++++.++ +. .|....+..+.. .-...|-+++|.
T Consensus 216 ~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~ 295 (629)
T KOG2300|consen 216 VLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQ 295 (629)
T ss_pred HHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHH
Confidence 22234556678888887777766432 11 122222221111 112345566666
Q ss_pred HHHHHHHHc----CCCC-ChhhHH--------HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCChh-------hHHHHHH-
Q 015246 192 EILSAMKRK----GYTF-DGFGYC--------TVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIV-------SYNTLIN- 249 (410)
Q Consensus 192 ~~~~~~~~~----~~~~-~~~~~~--------~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~-------~~~~l~~- 249 (410)
++-++++.. .-.+ ....++ .++.+-.-.|++.+|++-+.+|.+.- -.|.+. ....++.
T Consensus 296 K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGl 375 (629)
T KOG2300|consen 296 KYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGL 375 (629)
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhh
Confidence 666655432 1111 222222 22223345689999999998888651 122211 1122222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCchHHH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CH-----HHHHHHHHHH
Q 015246 250 LYCKEGKLEAAYLLLDEMEKQGFECDKYTH--TILIDGLCKAGNIKGARLHLEYMNKIGFDS-NL-----EAYNCIVDRL 321 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~-----~~~~~l~~~~ 321 (410)
-+...+.++.|..-|....+.-...|...+ ..+...|.+.|+-+.-.++++.+.-.+..+ +. ..+....--.
T Consensus 376 ys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 376 YSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred HhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 334568899999988887765333333322 334556888888777766666554321111 10 1111111123
Q ss_pred HccCChHHHHHHHHhhccC-Cch--------hHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 322 GKDGKIDHAINVFESMEVK-DSF--------TYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~-~~~--------~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
...+++.+|..++.+..+. +.. ....+...+...|+..++.+...-..
T Consensus 456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence 5789999999999877654 222 22333445566788888877765544
No 475
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=42.35 E-value=25 Score=21.23 Aligned_cols=21 Identities=14% Similarity=0.521 Sum_probs=14.7
Q ss_pred CChHHHHHHHHHHHHcC-CCCC
Q 015246 10 VSFDAGYTILNRMREAG-ISPD 30 (410)
Q Consensus 10 g~~~~a~~~~~~~~~~~-~~~~ 30 (410)
-+++.|+..|..+...| ++|+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChh
Confidence 46788888888888765 4443
No 476
>PRK09462 fur ferric uptake regulator; Provisional
Probab=42.02 E-value=1.4e+02 Score=21.92 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 151 RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 45555566666555554444444444444444443
No 477
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.98 E-value=2.6e+02 Score=25.05 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHH
Q 015246 150 GRLRTARWILKELGDSGHAPNAITYTTIMKCC 181 (410)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (410)
.+++.|..++..|.+.|..|....-..+..++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 55666666666666655555444333333333
No 478
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.35 E-value=1.8e+02 Score=23.21 Aligned_cols=113 Identities=11% Similarity=0.091 Sum_probs=67.4
Q ss_pred CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC---CHHHH--HHHHHHHHccCChHHHHHHHHhhccC----Cc
Q 015246 272 FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS---NLEAY--NCIVDRLGKDGKIDHAINVFESMEVK----DS 342 (410)
Q Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~----~~ 342 (410)
+.+...-++.|+--|.-...+.+|-..|..-. |+.| +...+ ..-+......|+.++|.+...++... |.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 35566667777777776666666666665433 3343 33333 33556678899999999988877654 44
Q ss_pred hhHHHHH----HHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 015246 343 FTYSSMV----HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 386 (410)
Q Consensus 343 ~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (410)
..+..+. .-+.+.|..++|+++.+.-+...-..+...+..+=..
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~ 147 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERT 147 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 3333332 2356788888888888776533223333444444333
No 479
>PRK10941 hypothetical protein; Provisional
Probab=41.18 E-value=2.1e+02 Score=23.77 Aligned_cols=58 Identities=16% Similarity=0.023 Sum_probs=31.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
+-.+|.+.++++.|.++.+.+.... +.++.-+.--.-.|.+.|.+..|..-++...+.
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4445556666666666666665542 223334444444556666666666655555544
No 480
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.98 E-value=2.6e+02 Score=24.83 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=37.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcC--CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHH
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDMICG--DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQ 128 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (410)
+...|++.+.-.|+.+...+.++.+.+. |..|....-..+.-+|.-.|++.+|.+.|-...
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777788877777777766553 223332222345556667777888887776654
No 481
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=39.77 E-value=1.4e+02 Score=21.25 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHh
Q 015246 294 GARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFES 336 (410)
Q Consensus 294 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 336 (410)
.+..+|..|...|+-.. +..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777766655433 44556666666777777777777654
No 482
>PRK12798 chemotaxis protein; Reviewed
Probab=39.75 E-value=2.7e+02 Score=24.73 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=21.7
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 015246 114 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC-KAGRLRTARWILKEL 162 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 162 (410)
.|+..++.+.+..+.....++....|-.|+.+-. ...++..|+++|+..
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~a 174 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQA 174 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 3444555555544444434444444444443322 233444555555444
No 483
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.66 E-value=3.9e+02 Score=26.49 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=31.6
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVV--TYNSLIAGATRNSLLSCSLDLLDEMLE 59 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~ 59 (410)
..|.+.|+++.|+++-.. .|+.. .+..-...|.+.+++..|-++|-++.+
T Consensus 366 k~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 456677777777765322 23322 333345667788889999998888743
No 484
>PF13934 ELYS: Nuclear pore complex assembly
Probab=39.14 E-value=2e+02 Score=23.05 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=62.8
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 244 YNTLINLYC--KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 244 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
+...++++. -.+++++|.+.+..- .+.| ..-..++.++...|+...|..+++...-. ..+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-
Confidence 444455543 345666666665221 1111 12234677777778888887777664432 1222333333334
Q ss_pred HccCChHHHHHHHHhhccC-CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 322 GKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
..++.+.+|..+-+..... ....+..++..+..... + ...+++++..
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~L 198 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECA--R-SGRLDELLSL 198 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhh--h-hhHHHHHHhC
Confidence 5567888888777766665 34566666666654443 1 2235555533
No 485
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=38.85 E-value=1.3e+02 Score=20.87 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=18.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHH
Q 015246 72 LMHCLFQLGKPDEANRVFQDMICGDLTPCTATFN 105 (410)
Q Consensus 72 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (410)
+++.+.++...++|+++++-|.++| ..+...-+
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~ 99 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAK 99 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4445555666666666666666665 44444333
No 486
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.70 E-value=2.6e+02 Score=24.15 Aligned_cols=46 Identities=9% Similarity=0.141 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
..|-.+++.....|.++.++.+|++++..|-.|-...-..++..+.
T Consensus 141 KYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 141 KYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566677777777888888888888888887776666665655554
No 487
>PRK09857 putative transposase; Provisional
Probab=38.64 E-value=2.4e+02 Score=23.77 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=45.4
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 170 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (410)
+..++......++.++..++++.+.+. .+.......++..-+...|.-+++.++..+|...|..++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555556677777777777777665 333444455666777777777788999999998887655
No 488
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.45 E-value=2.4e+02 Score=27.92 Aligned_cols=132 Identities=12% Similarity=0.106 Sum_probs=79.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchH
Q 015246 39 AGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD 118 (410)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (410)
..+...|+++.|++.-..+ .+..+|..|.....++|+.+-|...|++... |..|--.|.-.|+.+
T Consensus 651 ~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~e 715 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLE 715 (1202)
T ss_pred eeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHH
Confidence 3445567777776665443 3667788888888888888888888877652 344445566678877
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 015246 119 NALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
+..++.+....++ |..+ ......-.|+.++-.++++..-. .| ..|. .....|.-++|.++.++..
T Consensus 716 KL~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~n~g~---~~--layl----ta~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 716 KLSKMMKIAEIRN---DATG---QFQNALYLGDVKERVKILENGGQ---LP--LAYL----TAAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHHhcCc---cc--HHHH----HHhhcCcHHHHHHHHHhhc
Confidence 7777766665431 2211 11112235667776666654432 11 1121 1234677788888888876
Q ss_pred Hc
Q 015246 199 RK 200 (410)
Q Consensus 199 ~~ 200 (410)
..
T Consensus 781 ~~ 782 (1202)
T KOG0292|consen 781 KQ 782 (1202)
T ss_pred cc
Confidence 63
No 489
>PRK12798 chemotaxis protein; Reviewed
Probab=37.66 E-value=3e+02 Score=24.53 Aligned_cols=153 Identities=12% Similarity=0.053 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHH-HhccchhHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHHcCCHH
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCC-FRNRKYKLGLEILSAMKRKGYTFD----GFGYCTVIAAFVKIGRLK 223 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 223 (410)
.|+..++.+.+..+.....++....+-.|+.+- ....++..|+++|+...-. -|. ......-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 566666666666665555555555555555433 3345666677766665533 222 222333344455666666
Q ss_pred HHHHHHHHHHHcCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHhcCChhHHHHHH
Q 015246 224 EATDYMEQMVTDGVQLDIV---SYNTLINLYCKEGKLEAAYLLLDEMEKQ-GFECDKYTHTILIDGLCKAGNIKGARLHL 299 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (410)
+...+-.....+ +..++. .+..+...+.+.++-..-.. +..+... ...--...|..+.+.-.-.|+.+-|...-
T Consensus 203 rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 666555554443 111211 12222333333332221111 2222211 11112345666666666666666666666
Q ss_pred HHHHhc
Q 015246 300 EYMNKI 305 (410)
Q Consensus 300 ~~~~~~ 305 (410)
++....
T Consensus 281 ~~A~~L 286 (421)
T PRK12798 281 ERALKL 286 (421)
T ss_pred HHHHHh
Confidence 655543
No 490
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=37.62 E-value=4.1e+02 Score=26.19 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=18.2
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHc
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREA 25 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~ 25 (410)
++..+.|+|+.+.|.+..++....
T Consensus 331 ~vyy~lR~G~lk~A~~~l~e~~~~ 354 (835)
T KOG2168|consen 331 LVYYLLRCGDLKAASQFLNENKDF 354 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhh
Confidence 456677888888888888877753
No 491
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.91 E-value=1.3e+02 Score=25.74 Aligned_cols=94 Identities=15% Similarity=-0.029 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHhhccC-------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHH
Q 015246 311 LEAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 383 (410)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 383 (410)
...|..=.+-|.+..++..|...|.+.... +...|+.-..+-...|++..|+.=..+.+... +.....+..-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhh
Confidence 445666677788899999999999987655 55678887778888999999999888888553 3345556566
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH
Q 015246 384 VDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 384 ~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
..++....++++|..+.+...+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 6677888899999998887644
No 492
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.36 E-value=1.5e+02 Score=20.42 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=8.0
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 015246 252 CKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~ 270 (410)
.+.|-.+++...+.++...
T Consensus 80 ~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 80 WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHCT-HHHHHHHHHHHCT-
T ss_pred HhhccHHHHHHHHHHHHhC
Confidence 3444445555444444433
No 493
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.29 E-value=82 Score=26.37 Aligned_cols=51 Identities=20% Similarity=0.213 Sum_probs=34.2
Q ss_pred HHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 321 LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
..+.|+.++|..+|+..... ++.....+....-..++.-+|-+.|-+++..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 34678888888888877665 4445555555455566677777777777643
No 494
>PF13934 ELYS: Nuclear pore complex assembly
Probab=34.45 E-value=2.4e+02 Score=22.60 Aligned_cols=97 Identities=9% Similarity=0.062 Sum_probs=49.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHH
Q 015246 216 FVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 295 (410)
Q Consensus 216 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 295 (410)
+...+++++|.+.+..- .+. +..-..++.++...|+.+.|..+++...... .+......++.. ...+.+.+|
T Consensus 88 ~LD~~~~~~A~~~L~~p---s~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHP---SLI--PWFPDKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred HhChHhHHHHHHHhCCC---CCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHH
Confidence 34556666666665221 111 1222346666777777777777776644221 122222222333 556777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 296 RLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
..+-+...+.. ....+..++..+..
T Consensus 160 f~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 160 FSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 76665544321 13455555555543
No 495
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=33.81 E-value=1.6e+02 Score=20.19 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=14.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 015246 281 ILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
.++..|...+++++|...+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34555666666666666666554
No 496
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=33.46 E-value=1.4e+02 Score=19.41 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
+.|+...|+.++......+...-|..++.+.... +...+..++ ...+..|+++.....+
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~~e~KeaL~~ll-----e~~PGaa~qia~~v~e 71 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVDPESKEALKELL-----EENPGAAMQIAGAVNE 71 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHcCHHHHHHHHHHH-----HHCCCHHHHHHHHHHH
Confidence 4567777777777777777766666666655544 333333333 1234445555555443
No 497
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=33.43 E-value=3.6e+02 Score=24.20 Aligned_cols=97 Identities=12% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH--------HHhhcCchHHHHHH
Q 015246 52 DLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN--------GLCKNRYTDNALRM 123 (410)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~a~~~ 123 (410)
++-..+....+.|+..+.+-+...++..-..+-...+++-..+.+ .|-...+..++- .-.+...-+++.++
T Consensus 169 elc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikf 247 (669)
T KOG3636|consen 169 ELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKF 247 (669)
T ss_pred HHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHH
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015246 124 FRGLQKHGFVPELVTYNILIKGLCKA 149 (410)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (410)
++.|...=-..|+.-+-.|...|+..
T Consensus 248 Lenmp~~L~~eDvpDffsLAqyY~~K 273 (669)
T KOG3636|consen 248 LENMPAQLSVEDVPDFFSLAQYYSDK 273 (669)
T ss_pred HHcCchhcccccchhHHHHHHHHhhc
No 498
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=33.22 E-value=1.9e+02 Score=20.88 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcCC
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDMICGD 96 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 96 (410)
++..++-.+...|+++.|+++.+-+++.|
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcC
Confidence 33344444555666666666666655555
No 499
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=32.94 E-value=1.3e+02 Score=24.13 Aligned_cols=55 Identities=13% Similarity=0.095 Sum_probs=33.3
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM 60 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 60 (410)
+..+.|+.+.|.+++++..+.- +.....|-.+...--+.|+++.|.+.|++..+.
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4455666666666666666542 334555666666666666666666666666654
No 500
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.94 E-value=4.2e+02 Score=24.62 Aligned_cols=123 Identities=14% Similarity=0.064 Sum_probs=0.0
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAG-ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 80 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (410)
|+.-|.+.+++++|+.++..|.-.- ...--...+.++..+.+..--++....++.+...=..|....-.....-|.. .
T Consensus 414 L~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d-~ 492 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD-P 492 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH-H
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG 131 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 131 (410)
=.+-|.+.|..+...+ .|..........|+.|--+++...+...|
T Consensus 493 V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhcc
Done!