Query 015246
Match_columns 410
No_of_seqs 725 out of 1687
Neff 12.3
Searched_HMMs 29240
Date Mon Mar 25 09:14:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015246.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015246hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.8E-39 2.3E-43 293.9 43.6 399 2-410 90-583 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1E-36 3.5E-41 279.4 41.3 391 8-410 65-549 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 4.5E-32 1.5E-36 235.1 45.6 381 2-392 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 3.4E-31 1.2E-35 229.6 42.4 365 37-410 5-372 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.3E-32 7.8E-37 240.4 24.6 206 14-219 8-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 6E-32 2E-36 237.8 24.7 207 48-254 7-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 3.1E-28 1.1E-32 219.1 36.1 397 3-409 13-481 (514)
8 2y4t_A DNAJ homolog subfamily 100.0 6.3E-26 2.2E-30 200.6 39.9 373 13-397 9-445 (450)
9 3fp2_A TPR repeat-containing p 100.0 5E-26 1.7E-30 205.9 37.0 394 3-409 32-494 (537)
10 2y4t_A DNAJ homolog subfamily 100.0 6.3E-26 2.2E-30 200.6 36.1 348 51-408 12-412 (450)
11 2gw1_A Mitochondrial precursor 100.0 3.9E-25 1.3E-29 198.9 33.7 370 31-409 6-447 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 2.5E-22 8.6E-27 171.9 36.7 329 30-388 2-351 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 2.4E-22 8.2E-27 172.0 35.9 317 65-410 2-339 (359)
14 3fp2_A TPR repeat-containing p 99.9 1.7E-22 5.9E-27 182.7 35.0 369 30-410 24-461 (537)
15 2xm6_A Protein corresponding t 99.9 9.3E-20 3.2E-24 162.5 49.2 365 13-407 24-433 (490)
16 2xm6_A Protein corresponding t 99.9 1.4E-19 4.7E-24 161.4 46.1 352 9-387 56-450 (490)
17 3hym_B Cell division cycle pro 99.9 3.1E-21 1.1E-25 163.1 32.4 286 29-321 20-314 (330)
18 3hym_B Cell division cycle pro 99.9 3.4E-21 1.2E-25 162.9 32.3 296 64-392 20-320 (330)
19 2ooe_A Cleavage stimulation fa 99.9 2.7E-19 9.2E-24 161.1 43.0 396 6-408 22-494 (530)
20 1fch_A Peroxisomal targeting s 99.9 5E-21 1.7E-25 164.5 26.0 276 68-368 66-356 (368)
21 2ooe_A Cleavage stimulation fa 99.9 1.5E-18 5.2E-23 156.2 41.8 381 19-408 2-456 (530)
22 1fch_A Peroxisomal targeting s 99.9 7.7E-21 2.6E-25 163.4 24.6 304 6-335 35-354 (368)
23 4eqf_A PEX5-related protein; a 99.9 1.3E-20 4.3E-25 161.8 22.6 264 65-335 64-351 (365)
24 4eqf_A PEX5-related protein; a 99.9 1.3E-20 4.3E-25 161.8 21.1 262 138-402 67-352 (365)
25 4g1t_A Interferon-induced prot 99.9 6.8E-19 2.3E-23 156.5 33.1 368 29-409 49-462 (472)
26 3mkr_A Coatomer subunit epsilo 99.9 2.5E-19 8.7E-24 147.6 24.7 274 108-399 6-287 (291)
27 3cv0_A Peroxisome targeting si 99.9 5.8E-19 2E-23 149.0 27.5 267 31-303 21-313 (327)
28 3cv0_A Peroxisome targeting si 99.9 4E-19 1.4E-23 149.9 26.1 267 65-337 20-312 (327)
29 1b89_A Protein (clathrin heavy 99.9 3.9E-20 1.3E-24 155.6 19.2 289 6-337 13-308 (449)
30 4g1t_A Interferon-induced prot 99.9 7.8E-18 2.7E-22 149.6 34.7 353 4-372 59-460 (472)
31 3mkr_A Coatomer subunit epsilo 99.9 9.6E-19 3.3E-23 144.1 25.9 220 71-304 39-263 (291)
32 1b89_A Protein (clathrin heavy 99.8 2.9E-19 9.8E-24 150.4 21.3 281 43-365 15-305 (449)
33 3e4b_A ALGK; tetratricopeptide 99.8 1E-18 3.5E-23 153.4 25.2 373 3-406 10-421 (452)
34 1xi4_A Clathrin heavy chain; a 99.8 2.8E-16 9.7E-21 147.7 38.8 346 2-401 991-1340(1630)
35 1xi4_A Clathrin heavy chain; a 99.8 3E-15 1E-19 140.9 40.5 346 4-401 1057-1440(1630)
36 3uq3_A Heat shock protein STI1 99.8 4.7E-17 1.6E-21 132.2 23.1 223 136-371 5-236 (258)
37 3e4b_A ALGK; tetratricopeptide 99.8 1.7E-16 5.7E-21 139.3 27.0 347 37-408 9-389 (452)
38 3uq3_A Heat shock protein STI1 99.8 2.1E-16 7.1E-21 128.4 24.3 228 32-304 6-235 (258)
39 2pl2_A Hypothetical conserved 99.8 6.9E-17 2.4E-21 127.3 20.6 209 29-267 3-211 (217)
40 3u4t_A TPR repeat-containing p 99.8 2.7E-16 9.2E-21 128.9 24.7 240 138-384 5-262 (272)
41 2pl2_A Hypothetical conserved 99.8 3.2E-16 1.1E-20 123.4 22.5 198 99-302 3-211 (217)
42 1ouv_A Conserved hypothetical 99.8 3.9E-15 1.3E-19 122.0 29.6 223 135-372 5-252 (273)
43 3spa_A Mtrpol, DNA-directed RN 99.8 1.7E-18 6E-23 157.5 9.6 120 30-149 126-249 (1134)
44 3spa_A Mtrpol, DNA-directed RN 99.8 2.3E-18 7.9E-23 156.7 10.4 119 66-184 127-249 (1134)
45 1ouv_A Conserved hypothetical 99.7 1.4E-14 4.7E-19 118.7 31.2 223 100-340 5-251 (273)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.3E-16 1.8E-20 127.3 22.8 241 150-400 19-269 (275)
47 1xnf_A Lipoprotein NLPI; TPR, 99.7 3.2E-16 1.1E-20 128.6 21.2 222 138-365 45-269 (275)
48 3u4t_A TPR repeat-containing p 99.7 2.6E-15 8.9E-20 123.0 25.3 163 35-200 7-171 (272)
49 4e6h_A MRNA 3'-END-processing 99.7 3.4E-13 1.2E-17 122.4 40.7 393 13-409 49-573 (679)
50 2ho1_A Type 4 fimbrial biogene 99.7 7.2E-15 2.5E-19 118.9 26.4 200 67-270 38-238 (252)
51 2ho1_A Type 4 fimbrial biogene 99.7 2.5E-15 8.6E-20 121.6 23.2 198 171-371 37-238 (252)
52 2h6f_A Protein farnesyltransfe 99.7 1.9E-15 6.5E-20 128.6 23.0 224 174-403 100-344 (382)
53 2vq2_A PILW, putative fimbrial 99.7 4.9E-15 1.7E-19 117.6 24.1 198 170-370 7-210 (225)
54 2h6f_A Protein farnesyltransfe 99.7 5.1E-15 1.7E-19 126.0 25.4 229 32-267 98-344 (382)
55 2vq2_A PILW, putative fimbrial 99.7 1.1E-14 3.7E-19 115.6 25.7 96 32-129 9-105 (225)
56 2q7f_A YRRB protein; TPR, prot 99.7 1E-15 3.5E-20 123.1 19.2 210 169-383 21-233 (243)
57 2q7f_A YRRB protein; TPR, prot 99.7 1.5E-15 5E-20 122.2 19.6 201 135-340 22-222 (243)
58 3sf4_A G-protein-signaling mod 99.7 1.5E-15 5E-20 132.1 20.3 151 208-358 189-363 (406)
59 4a1s_A PINS, partner of inscut 99.7 1.8E-15 6.3E-20 131.8 19.9 269 102-371 49-372 (411)
60 3sf4_A G-protein-signaling mod 99.7 5E-15 1.7E-19 128.7 21.2 298 98-396 6-366 (406)
61 4a1s_A PINS, partner of inscut 99.7 4.6E-15 1.6E-19 129.3 20.3 274 66-340 48-372 (411)
62 3ro2_A PINS homolog, G-protein 99.7 4.5E-15 1.5E-19 125.5 19.3 272 104-407 8-333 (338)
63 3ulq_A Response regulator aspa 99.7 6.1E-14 2.1E-18 120.9 26.3 229 142-370 109-367 (383)
64 2ond_A Cleavage stimulation fa 99.7 1.8E-13 6.3E-18 114.0 27.2 231 136-371 8-270 (308)
65 3ro2_A PINS homolog, G-protein 99.7 2.2E-14 7.6E-19 121.2 21.0 274 66-371 5-332 (338)
66 3vtx_A MAMA; tetratricopeptide 99.6 2.2E-14 7.6E-19 109.9 18.9 164 205-371 4-170 (184)
67 3ulq_A Response regulator aspa 99.6 6.7E-14 2.3E-18 120.6 23.8 227 177-406 109-368 (383)
68 4e6h_A MRNA 3'-END-processing 99.6 1.7E-11 5.8E-16 111.4 39.4 380 2-387 72-584 (679)
69 2ond_A Cleavage stimulation fa 99.6 1.3E-12 4.4E-17 108.9 28.4 84 220-304 183-269 (308)
70 3nf1_A KLC 1, kinesin light ch 99.6 1.7E-14 5.7E-19 120.6 16.7 241 136-408 27-309 (311)
71 4abn_A Tetratricopeptide repea 99.6 4.8E-14 1.7E-18 124.5 19.7 215 46-267 83-318 (474)
72 4abn_A Tetratricopeptide repea 99.6 1.6E-13 5.5E-18 121.2 21.6 212 82-299 84-315 (474)
73 3vtx_A MAMA; tetratricopeptide 99.6 8.7E-13 3E-17 101.0 22.1 25 244-268 144-168 (184)
74 3q15_A PSP28, response regulat 99.6 1.9E-12 6.4E-17 111.3 25.3 226 143-369 108-363 (378)
75 3nf1_A KLC 1, kinesin light ch 99.6 6.2E-14 2.1E-18 117.1 15.2 173 98-270 24-224 (311)
76 1hz4_A MALT regulatory protein 99.6 1E-11 3.4E-16 106.6 28.7 297 104-408 17-351 (373)
77 3q15_A PSP28, response regulat 99.5 1.8E-12 6.1E-17 111.5 22.4 228 176-406 106-365 (378)
78 1hz4_A MALT regulatory protein 99.5 2.8E-11 9.4E-16 103.9 28.9 201 140-340 97-322 (373)
79 3as5_A MAMA; tetratricopeptide 99.5 1.1E-12 3.6E-17 100.5 17.5 163 244-409 11-176 (186)
80 4i17_A Hypothetical protein; T 99.5 1.8E-12 6.1E-17 103.0 18.5 198 203-410 4-213 (228)
81 4gyw_A UDP-N-acetylglucosamine 99.5 1.1E-12 3.7E-17 120.6 16.8 163 205-370 8-173 (723)
82 4i17_A Hypothetical protein; T 99.5 2.5E-11 8.4E-16 96.4 22.6 195 29-235 5-209 (228)
83 3as5_A MAMA; tetratricopeptide 99.5 1.4E-11 4.7E-16 94.2 19.9 161 69-233 11-171 (186)
84 3mv2_B Coatomer subunit epsilo 99.4 5.2E-11 1.8E-15 96.2 22.6 239 109-371 21-282 (310)
85 4gyw_A UDP-N-acetylglucosamine 99.4 9.1E-12 3.1E-16 114.5 20.1 168 28-199 6-173 (723)
86 2uy1_A Cleavage stimulation fa 99.4 7.3E-10 2.5E-14 97.8 31.1 363 8-405 6-412 (493)
87 3mv2_B Coatomer subunit epsilo 99.4 2.6E-10 8.9E-15 92.2 24.7 179 120-305 85-282 (310)
88 3edt_B KLC 2, kinesin light ch 99.4 8.2E-12 2.8E-16 102.6 15.4 132 173-304 45-197 (283)
89 1qqe_A Vesicular transport pro 99.4 1E-10 3.5E-15 96.5 21.6 132 173-304 79-227 (292)
90 3edt_B KLC 2, kinesin light ch 99.4 1E-11 3.4E-16 102.0 14.6 29 276-304 252-280 (283)
91 1qqe_A Vesicular transport pro 99.4 1.2E-10 4.1E-15 96.1 20.8 204 151-369 32-267 (292)
92 3qky_A Outer membrane assembly 99.3 1.3E-10 4.5E-15 94.2 18.0 192 203-410 12-228 (261)
93 2uy1_A Cleavage stimulation fa 99.3 1.1E-08 3.9E-13 90.2 30.5 345 10-370 28-412 (493)
94 3qky_A Outer membrane assembly 99.3 7.3E-10 2.5E-14 89.8 20.8 63 66-129 15-80 (261)
95 2yhc_A BAMD, UPF0169 lipoprote 99.3 7.2E-10 2.5E-14 87.6 19.8 188 206-410 4-217 (225)
96 3urz_A Uncharacterized protein 99.3 2.2E-10 7.4E-15 89.3 16.4 155 5-164 13-185 (208)
97 2fo7_A Synthetic consensus TPR 99.3 2.4E-10 8.3E-15 82.1 15.5 128 280-409 5-135 (136)
98 3urz_A Uncharacterized protein 99.3 5.1E-10 1.7E-14 87.2 17.2 113 32-147 5-133 (208)
99 2fo7_A Synthetic consensus TPR 99.2 7.9E-10 2.7E-14 79.4 16.1 128 34-164 4-131 (136)
100 3rjv_A Putative SEL1 repeat pr 99.2 4E-09 1.4E-13 82.3 20.5 173 190-372 5-198 (212)
101 2pzi_A Probable serine/threoni 99.2 3.8E-10 1.3E-14 104.2 16.8 154 182-340 402-563 (681)
102 2pzi_A Probable serine/threoni 99.2 2.3E-10 7.9E-15 105.7 15.3 171 7-183 402-580 (681)
103 3dra_A Protein farnesyltransfe 99.2 3.3E-08 1.1E-12 80.8 26.0 220 45-269 47-286 (306)
104 4ga2_A E3 SUMO-protein ligase 99.2 1.2E-10 4.2E-15 85.4 10.7 144 4-151 5-149 (150)
105 3dra_A Protein farnesyltransfe 99.2 3.6E-08 1.2E-12 80.6 25.8 226 5-235 41-287 (306)
106 2yhc_A BAMD, UPF0169 lipoprote 99.2 5.3E-09 1.8E-13 82.5 20.2 182 34-236 7-214 (225)
107 2r5s_A Uncharacterized protein 99.2 3.5E-10 1.2E-14 85.6 12.2 163 33-199 8-172 (176)
108 4ga2_A E3 SUMO-protein ligase 99.2 2.4E-10 8E-15 83.8 10.8 81 106-188 36-116 (150)
109 3rjv_A Putative SEL1 repeat pr 99.2 9.8E-09 3.4E-13 80.1 20.6 141 14-164 4-157 (212)
110 3qou_A Protein YBBN; thioredox 99.2 2.5E-09 8.5E-14 87.8 17.5 164 30-197 116-281 (287)
111 2vsy_A XCC0866; transferase, g 99.2 1E-09 3.4E-14 99.7 16.5 161 219-383 2-168 (568)
112 3qou_A Protein YBBN; thioredox 99.2 5.2E-09 1.8E-13 85.9 19.3 166 98-267 114-281 (287)
113 2r5s_A Uncharacterized protein 99.1 1.3E-09 4.6E-14 82.3 14.0 157 107-267 12-170 (176)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 1.3E-09 4.5E-14 90.5 14.6 220 149-399 4-254 (307)
115 2vsy_A XCC0866; transferase, g 99.1 2.2E-09 7.4E-14 97.5 16.8 155 9-167 2-159 (568)
116 3gyz_A Chaperone protein IPGC; 99.1 1.4E-09 4.8E-14 79.3 10.6 95 276-371 36-133 (151)
117 2ifu_A Gamma-SNAP; membrane fu 99.1 2.3E-08 7.8E-13 83.0 19.1 199 8-233 3-222 (307)
118 1hh8_A P67PHOX, NCF-2, neutrop 99.0 7.8E-09 2.7E-13 80.8 14.5 129 242-377 7-154 (213)
119 4gco_A Protein STI-1; structur 99.0 4.7E-09 1.6E-13 74.2 11.9 105 277-383 14-121 (126)
120 4f3v_A ESX-1 secretion system 99.0 1.6E-08 5.4E-13 80.8 15.7 125 282-408 108-239 (282)
121 2c2l_A CHIP, carboxy terminus 99.0 3E-09 1E-13 87.0 10.9 99 170-270 3-101 (281)
122 3q7a_A Farnesyltransferase alp 99.0 7.2E-07 2.5E-11 73.7 24.8 173 43-220 66-256 (349)
123 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.1E-07 3.7E-12 74.3 19.2 126 140-270 10-150 (213)
124 2qfc_A PLCR protein; TPR, HTH, 99.0 1E-07 3.5E-12 78.5 19.9 161 208-368 77-263 (293)
125 3u3w_A Transcriptional activat 99.0 6.8E-07 2.3E-11 73.6 24.7 127 142-268 121-264 (293)
126 2vgx_A Chaperone SYCD; alterna 99.0 2.3E-09 7.7E-14 78.3 8.6 108 262-371 8-118 (148)
127 3u3w_A Transcriptional activat 99.0 5.6E-07 1.9E-11 74.1 24.0 162 142-303 81-264 (293)
128 3q7a_A Farnesyltransferase alp 99.0 2E-06 6.7E-11 71.2 26.5 175 77-256 65-257 (349)
129 2qfc_A PLCR protein; TPR, HTH, 98.9 9.3E-07 3.2E-11 72.8 24.5 164 173-336 77-262 (293)
130 4gco_A Protein STI-1; structur 98.9 2.8E-08 9.7E-13 70.1 12.7 111 31-144 13-123 (126)
131 2e2e_A Formate-dependent nitri 98.9 1.8E-08 6.1E-13 76.2 12.4 124 5-131 19-145 (177)
132 1a17_A Serine/threonine protei 98.9 4.5E-08 1.5E-12 72.9 14.4 123 279-403 16-143 (166)
133 2c2l_A CHIP, carboxy terminus 98.9 8.8E-09 3E-13 84.2 11.1 195 30-234 3-198 (281)
134 2e2e_A Formate-dependent nitri 98.9 1.7E-08 5.9E-13 76.3 11.7 120 251-372 20-145 (177)
135 1a17_A Serine/threonine protei 98.9 1.2E-07 4E-12 70.6 15.3 95 33-129 15-109 (166)
136 4f3v_A ESX-1 secretion system 98.9 1.1E-07 3.8E-12 75.9 15.4 187 8-200 18-237 (282)
137 3gw4_A Uncharacterized protein 98.9 4.9E-08 1.7E-12 75.5 13.1 92 278-369 68-174 (203)
138 1p5q_A FKBP52, FK506-binding p 98.9 6.5E-09 2.2E-13 87.3 8.5 143 10-155 127-283 (336)
139 2lni_A Stress-induced-phosphop 98.8 9.6E-08 3.3E-12 68.1 13.2 115 275-391 15-132 (133)
140 2xcb_A PCRH, regulatory protei 98.8 2.2E-08 7.5E-13 72.6 9.8 96 275-371 17-115 (142)
141 1na0_A Designed protein CTPR3; 98.8 1.9E-07 6.4E-12 65.6 14.2 98 31-130 9-106 (125)
142 2lni_A Stress-induced-phosphop 98.8 1.5E-07 5.1E-12 67.1 13.5 97 31-129 16-112 (133)
143 3gw4_A Uncharacterized protein 98.8 1.1E-07 3.6E-12 73.6 13.6 133 171-303 26-174 (203)
144 2vyi_A SGTA protein; chaperone 98.8 1.2E-07 4.1E-12 67.3 12.8 118 31-151 12-129 (131)
145 3gyz_A Chaperone protein IPGC; 98.8 3.7E-07 1.3E-11 66.4 15.4 97 172-270 37-133 (151)
146 1p5q_A FKBP52, FK506-binding p 98.8 9.6E-08 3.3E-12 80.2 14.0 84 312-396 197-283 (336)
147 3upv_A Heat shock protein STI1 98.8 5.1E-08 1.8E-12 68.9 10.3 95 276-371 4-101 (126)
148 1na0_A Designed protein CTPR3; 98.8 4.2E-07 1.4E-11 63.7 15.1 91 176-268 14-104 (125)
149 2vgx_A Chaperone SYCD; alterna 98.8 3E-08 1E-12 72.3 9.2 97 31-129 21-117 (148)
150 3sz7_A HSC70 cochaperone (SGT) 98.8 6.1E-08 2.1E-12 72.2 11.0 97 275-372 10-109 (164)
151 3dss_A Geranylgeranyl transfer 98.8 6.2E-06 2.1E-10 67.9 23.6 172 147-323 40-239 (331)
152 2vyi_A SGTA protein; chaperone 98.8 3.8E-07 1.3E-11 64.6 14.8 90 177-268 18-107 (131)
153 3dss_A Geranylgeranyl transfer 98.8 1.6E-05 5.4E-10 65.5 25.9 236 43-286 41-319 (331)
154 1hxi_A PEX5, peroxisome target 98.8 4.2E-08 1.4E-12 68.7 9.1 95 314-409 20-117 (121)
155 2kck_A TPR repeat; tetratricop 98.8 8.2E-08 2.8E-12 66.0 10.3 98 311-409 6-109 (112)
156 1elw_A TPR1-domain of HOP; HOP 98.7 1.8E-07 6.2E-12 64.9 11.3 108 275-384 3-113 (118)
157 3q49_B STIP1 homology and U bo 98.7 1.6E-07 5.6E-12 67.3 10.8 97 274-371 7-106 (137)
158 3upv_A Heat shock protein STI1 98.7 5.4E-07 1.8E-11 63.5 12.9 96 32-129 5-100 (126)
159 2fbn_A 70 kDa peptidylprolyl i 98.7 4.8E-08 1.6E-12 75.3 7.5 130 67-199 39-185 (198)
160 1elw_A TPR1-domain of HOP; HOP 98.7 1.4E-06 4.9E-11 60.2 14.3 97 32-130 5-101 (118)
161 4gcn_A Protein STI-1; structur 98.7 9E-07 3.1E-11 62.4 13.2 57 176-233 13-69 (127)
162 4gcn_A Protein STI-1; structur 98.7 7.4E-07 2.5E-11 62.9 12.6 102 278-382 10-121 (127)
163 2xcb_A PCRH, regulatory protei 98.7 4E-07 1.4E-11 65.8 11.5 99 240-340 17-115 (142)
164 2kck_A TPR repeat; tetratricop 98.6 5.6E-07 1.9E-11 61.7 11.3 97 32-130 7-106 (112)
165 4b4t_Q 26S proteasome regulato 98.6 2.8E-06 9.5E-11 74.2 18.4 193 178-370 11-244 (434)
166 2fbn_A 70 kDa peptidylprolyl i 98.6 5E-07 1.7E-11 69.5 12.1 85 312-397 89-176 (198)
167 2hr2_A Hypothetical protein; a 98.6 2.4E-07 8.1E-12 66.8 9.4 64 344-408 59-133 (159)
168 2dba_A Smooth muscle cell asso 98.6 7.7E-07 2.6E-11 64.7 12.3 110 275-387 27-143 (148)
169 2xev_A YBGF; tetratricopeptide 98.6 5.8E-07 2E-11 63.6 11.1 92 279-371 5-105 (129)
170 2dba_A Smooth muscle cell asso 98.6 2.2E-06 7.4E-11 62.2 13.8 98 240-340 27-128 (148)
171 4b4t_Q 26S proteasome regulato 98.6 4E-06 1.4E-10 73.2 17.6 199 142-340 10-245 (434)
172 1elr_A TPR2A-domain of HOP; HO 98.6 1.1E-06 3.9E-11 62.1 11.5 107 278-387 6-122 (131)
173 3q49_B STIP1 homology and U bo 98.6 2.1E-06 7.2E-11 61.4 13.0 97 30-128 8-104 (137)
174 1elr_A TPR2A-domain of HOP; HO 98.5 1.9E-06 6.5E-11 60.9 12.4 95 174-269 7-107 (131)
175 3ro3_A PINS homolog, G-protein 98.5 1E-06 3.4E-11 65.1 11.2 128 279-406 12-158 (164)
176 3sz7_A HSC70 cochaperone (SGT) 98.5 3.8E-06 1.3E-10 62.3 14.1 97 172-270 12-108 (164)
177 1wao_1 Serine/threonine protei 98.5 4.6E-07 1.6E-11 79.9 10.3 119 4-125 14-134 (477)
178 3rkv_A Putative peptidylprolyl 98.5 9.2E-07 3.2E-11 65.5 10.3 98 275-372 10-127 (162)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.8E-07 6.2E-12 82.1 6.9 158 10-191 248-405 (457)
180 1hxi_A PEX5, peroxisome target 98.5 1.9E-06 6.5E-11 60.1 10.8 92 36-129 22-113 (121)
181 3ro3_A PINS homolog, G-protein 98.5 1.3E-06 4.4E-11 64.5 10.4 93 278-370 51-157 (164)
182 2xev_A YBGF; tetratricopeptide 98.5 6.8E-06 2.3E-10 58.0 13.3 91 38-130 9-105 (129)
183 3k9i_A BH0479 protein; putativ 98.4 6.8E-07 2.3E-11 62.1 7.4 84 288-371 2-90 (117)
184 3k9i_A BH0479 protein; putativ 98.4 6.1E-07 2.1E-11 62.3 6.8 87 8-95 2-90 (117)
185 1wao_1 Serine/threonine protei 98.4 4.5E-07 1.6E-11 79.9 7.5 119 247-367 12-135 (477)
186 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3.2E-06 1.1E-10 74.2 12.6 121 241-362 268-405 (457)
187 2if4_A ATFKBP42; FKBP-like, al 98.4 5.8E-07 2E-11 75.5 7.5 149 241-409 179-331 (338)
188 1ihg_A Cyclophilin 40; ppiase 98.4 4.1E-06 1.4E-10 71.1 12.2 89 310-399 272-363 (370)
189 1dce_A Protein (RAB geranylger 98.3 5.8E-05 2E-09 67.9 18.4 169 223-395 46-244 (567)
190 1ihg_A Cyclophilin 40; ppiase 98.3 1.1E-05 3.9E-10 68.4 12.8 137 33-191 225-361 (370)
191 3rkv_A Putative peptidylprolyl 98.3 2.6E-05 8.9E-10 57.6 13.3 63 207-270 64-126 (162)
192 1klx_A Cysteine rich protein B 98.3 2.5E-05 8.7E-10 55.8 12.5 110 255-372 9-127 (138)
193 3n71_A Histone lysine methyltr 98.3 3.8E-06 1.3E-10 73.7 9.7 94 312-405 352-463 (490)
194 1dce_A Protein (RAB geranylger 98.3 0.00015 5.1E-09 65.2 19.9 172 45-221 43-241 (567)
195 2if4_A ATFKBP42; FKBP-like, al 98.3 6.9E-06 2.4E-10 68.9 10.8 146 206-371 179-328 (338)
196 1klx_A Cysteine rich protein B 98.2 6.3E-05 2.2E-09 53.7 12.6 112 9-131 8-127 (138)
197 2hr2_A Hypothetical protein; a 98.1 4.1E-05 1.4E-09 55.2 11.1 63 32-94 12-85 (159)
198 2l6j_A TPR repeat-containing p 98.1 1.3E-06 4.6E-11 59.8 3.2 86 312-398 5-99 (111)
199 2kat_A Uncharacterized protein 98.1 8.9E-06 3E-10 56.1 6.7 78 293-371 2-82 (115)
200 3n71_A Histone lysine methyltr 98.1 3.2E-05 1.1E-09 67.8 11.3 97 208-304 353-463 (490)
201 1zu2_A Mitochondrial import re 98.0 5.8E-06 2E-10 59.4 5.2 68 287-355 13-93 (158)
202 1na3_A Designed protein CTPR2; 98.0 5.3E-05 1.8E-09 49.4 8.4 78 312-390 10-90 (91)
203 2kat_A Uncharacterized protein 98.0 8.8E-05 3E-09 50.9 9.9 79 84-164 3-81 (115)
204 2l6j_A TPR repeat-containing p 97.9 6.1E-05 2.1E-09 51.2 8.8 65 30-95 3-67 (111)
205 3ma5_A Tetratricopeptide repea 97.9 3.7E-05 1.3E-09 51.3 7.5 81 309-389 5-89 (100)
206 1zu2_A Mitochondrial import re 97.9 5.2E-05 1.8E-09 54.5 7.9 88 6-95 12-120 (158)
207 1na3_A Designed protein CTPR2; 97.9 0.00014 4.8E-09 47.2 9.7 79 31-111 9-87 (91)
208 2kc7_A BFR218_protein; tetratr 97.7 5E-05 1.7E-09 50.5 4.9 54 318-371 7-64 (99)
209 3qww_A SET and MYND domain-con 97.7 0.00013 4.4E-09 63.0 8.2 60 344-403 342-408 (433)
210 3qwp_A SET and MYND domain-con 97.6 0.00039 1.3E-08 60.0 10.6 86 284-369 295-398 (429)
211 2kc7_A BFR218_protein; tetratr 97.6 0.00033 1.1E-08 46.4 7.9 63 347-410 5-68 (99)
212 3ly7_A Transcriptional activat 97.6 0.0018 6E-08 53.7 13.2 140 237-380 190-346 (372)
213 3bee_A Putative YFRE protein; 97.5 0.00077 2.6E-08 43.9 8.4 65 308-372 3-73 (93)
214 3ly7_A Transcriptional activat 97.5 0.0048 1.7E-07 51.2 14.3 64 169-234 275-338 (372)
215 2v5f_A Prolyl 4-hydroxylase su 97.4 0.001 3.5E-08 44.5 8.5 62 310-371 4-75 (104)
216 1pc2_A Mitochondria fission pr 97.4 0.00088 3E-08 47.6 8.0 79 292-371 14-100 (152)
217 3mkq_A Coatomer beta'-subunit; 97.4 0.019 6.4E-07 54.5 19.5 191 144-396 607-802 (814)
218 3qww_A SET and MYND domain-con 97.3 0.00068 2.3E-08 58.4 7.5 83 288-370 310-410 (433)
219 3qwp_A SET and MYND domain-con 97.2 0.002 6.8E-08 55.7 9.4 86 250-335 296-395 (429)
220 1pc2_A Mitochondria fission pr 97.1 0.0021 7.1E-08 45.7 7.3 88 7-95 9-100 (152)
221 3mkq_A Coatomer beta'-subunit; 97.0 0.027 9.3E-07 53.4 16.6 154 39-231 607-761 (814)
222 3lvg_A Clathrin heavy chain 1; 97.0 0.00072 2.4E-08 57.6 4.9 208 3-226 90-324 (624)
223 3bee_A Putative YFRE protein; 97.0 0.0062 2.1E-07 39.6 8.4 25 69-93 46-70 (93)
224 3mkq_B Coatomer subunit alpha; 96.8 0.095 3.3E-06 38.3 14.2 97 112-229 16-112 (177)
225 3mkq_B Coatomer subunit alpha; 96.7 0.043 1.5E-06 40.1 11.8 104 38-162 12-115 (177)
226 1wy6_A Hypothetical protein ST 96.7 0.074 2.5E-06 36.5 14.6 149 242-408 6-156 (172)
227 2v5f_A Prolyl 4-hydroxylase su 96.7 0.022 7.4E-07 37.9 9.3 64 31-94 5-74 (104)
228 1nzn_A CGI-135 protein, fissio 96.6 0.01 3.4E-07 40.6 7.5 85 286-371 11-103 (126)
229 4ady_A RPN2, 26S proteasome re 96.6 0.52 1.8E-05 44.6 22.2 150 215-369 499-656 (963)
230 3u64_A Protein TP_0956; tetrat 96.5 0.058 2E-06 43.0 11.9 85 47-133 179-272 (301)
231 3lvg_A Clathrin heavy chain 1; 96.5 2.3E-05 7.8E-10 66.4 -7.6 245 65-331 53-324 (624)
232 4h7y_A Dual specificity protei 96.3 0.068 2.3E-06 37.5 10.0 54 115-169 74-127 (161)
233 4h7y_A Dual specificity protei 96.3 0.13 4.6E-06 36.1 11.3 55 254-309 73-127 (161)
234 1wy6_A Hypothetical protein ST 96.2 0.16 5.6E-06 34.9 15.6 64 103-167 93-156 (172)
235 3u64_A Protein TP_0956; tetrat 96.2 0.062 2.1E-06 42.8 10.5 95 10-106 177-282 (301)
236 1nzn_A CGI-135 protein, fissio 95.8 0.099 3.4E-06 35.7 8.7 23 282-304 80-102 (126)
237 1y8m_A FIS1; mitochondria, unk 95.4 0.15 5.2E-06 35.5 8.6 64 308-371 36-106 (144)
238 3o48_A Mitochondria fission 1 95.4 0.095 3.2E-06 36.0 7.5 65 307-371 36-107 (134)
239 4ady_A RPN2, 26S proteasome re 95.1 2.3 8E-05 40.4 28.1 254 145-405 383-657 (963)
240 4b4t_P 26S proteasome regulato 94.9 1.8 6E-05 37.6 20.8 187 114-303 29-245 (445)
241 4fhn_B Nucleoporin NUP120; pro 94.7 2 6.9E-05 42.5 17.9 131 172-304 900-1049(1139)
242 4gns_B Protein CSD3, chitin bi 94.7 0.45 1.5E-05 44.0 12.4 53 350-403 345-397 (754)
243 4gns_B Protein CSD3, chitin bi 94.2 0.57 2E-05 43.3 11.9 55 283-338 344-398 (754)
244 1v54_E Cytochrome C oxidase po 94.2 0.66 2.2E-05 30.0 8.5 48 293-340 27-74 (109)
245 2ff4_A Probable regulatory pro 94.1 0.55 1.9E-05 39.9 10.9 109 275-383 111-251 (388)
246 4fhn_B Nucleoporin NUP120; pro 93.9 3.7 0.00013 40.7 17.7 126 243-370 901-1049(1139)
247 2ff4_A Probable regulatory pro 93.8 0.24 8.2E-06 42.1 8.2 77 33-110 173-254 (388)
248 4b4t_P 26S proteasome regulato 93.6 3.3 0.00011 35.9 23.1 51 45-95 30-85 (445)
249 1v54_E Cytochrome C oxidase po 93.2 1 3.6E-05 29.0 9.1 48 257-304 26-73 (109)
250 3ffl_A Anaphase-promoting comp 93.2 1.2 4.2E-05 32.0 9.6 113 278-403 22-148 (167)
251 3ffl_A Anaphase-promoting comp 93.1 1.4 4.8E-05 31.7 9.8 61 208-268 22-90 (167)
252 3o48_A Mitochondria fission 1 93.0 1.5 5E-05 30.2 10.1 66 239-304 38-106 (134)
253 2y69_E Cytochrome C oxidase su 92.3 1.6 5.3E-05 30.0 8.5 47 294-340 71-117 (152)
254 2y69_E Cytochrome C oxidase su 91.8 2.2 7.5E-05 29.3 9.1 61 258-319 70-130 (152)
255 1qsa_A Protein (soluble lytic 90.9 9.2 0.00031 34.7 30.9 76 70-151 76-151 (618)
256 1zbp_A Hypothetical protein VP 90.8 0.93 3.2E-05 35.6 7.2 114 3-129 4-128 (273)
257 1y8m_A FIS1; mitochondria, unk 90.3 3.4 0.00012 28.8 11.8 66 239-304 37-105 (144)
258 2wpv_A GET4, UPF0363 protein Y 90.2 6.6 0.00023 31.9 21.6 42 309-350 132-173 (312)
259 3txn_A 26S proteasome regulato 89.9 8.3 0.00028 32.6 19.5 166 136-302 19-207 (394)
260 4b4t_R RPN7, 26S proteasome re 87.0 13 0.00043 32.1 12.5 98 138-235 133-237 (429)
261 3lpz_A GET4 (YOR164C homolog); 86.8 12 0.00041 30.7 22.3 26 309-334 134-159 (336)
262 4b4t_R RPN7, 26S proteasome re 86.3 14 0.00047 31.8 12.4 99 172-270 132-237 (429)
263 3lpz_A GET4 (YOR164C homolog); 84.8 15 0.00052 30.1 22.2 192 9-234 9-215 (336)
264 1zbp_A Hypothetical protein VP 84.5 3.4 0.00012 32.5 6.9 53 319-371 5-60 (273)
265 2uwj_G Type III export protein 81.4 8.5 0.00029 24.8 7.5 49 76-130 49-97 (115)
266 3eiq_C Programmed cell death p 81.0 23 0.00078 29.5 11.2 24 105-128 58-81 (358)
267 2p58_C Putative type III secre 80.7 9.2 0.00031 24.7 8.5 49 76-130 50-98 (116)
268 3txn_A 26S proteasome regulato 76.5 34 0.0012 29.0 25.5 30 341-372 315-344 (394)
269 3ltm_A Alpha-REP4; protein eng 76.5 22 0.00074 26.7 19.9 18 135-152 94-111 (211)
270 3esl_A Checkpoint serine/threo 76.4 22 0.00074 26.6 9.7 55 220-274 93-148 (202)
271 1qsa_A Protein (soluble lytic 73.0 56 0.0019 29.8 36.6 178 151-335 229-437 (618)
272 3esl_A Checkpoint serine/threo 72.1 28 0.00097 26.0 9.9 57 184-240 92-149 (202)
273 2d2s_A Exocyst complex compone 71.6 21 0.00073 27.6 7.9 30 99-128 89-118 (235)
274 1wdy_A 2-5A-dependent ribonucl 69.9 15 0.00051 28.9 7.3 21 219-239 192-212 (285)
275 1k1a_A B-cell lymphoma 3-encod 68.2 30 0.001 26.3 8.5 19 42-60 17-35 (241)
276 2wpv_A GET4, UPF0363 protein Y 67.2 50 0.0017 26.9 22.2 134 12-160 13-158 (312)
277 3ltm_A Alpha-REP4; protein eng 66.9 37 0.0013 25.3 18.8 167 13-199 18-184 (211)
278 3kae_A CDC27, possible protein 64.3 38 0.0013 24.6 8.9 79 322-402 44-139 (242)
279 2d2s_A Exocyst complex compone 63.7 49 0.0017 25.6 9.4 88 73-163 25-118 (235)
280 2wvi_A Mitotic checkpoint seri 63.5 29 0.001 25.0 6.6 85 16-103 43-133 (164)
281 3jxi_A Vanilloid receptor-rela 63.0 11 0.00038 29.4 5.1 52 40-91 11-71 (260)
282 4ets_A Ferric uptake regulatio 62.7 29 0.00099 24.9 6.7 71 12-83 13-86 (162)
283 2qx5_A Nucleoporin NIC96; mRNA 62.6 95 0.0032 28.5 20.1 81 141-232 299-382 (661)
284 2uwj_G Type III export protein 62.4 29 0.00098 22.5 9.7 86 290-380 20-105 (115)
285 2p58_C Putative type III secre 61.5 30 0.001 22.4 10.5 86 290-380 21-106 (116)
286 3kea_A K1L; tropism, ANK repea 61.4 54 0.0018 26.0 9.0 17 73-89 66-82 (285)
287 2nsz_A Programmed cell death p 60.1 38 0.0013 23.1 7.6 25 279-303 10-34 (129)
288 1wdy_A 2-5A-dependent ribonucl 58.8 63 0.0021 25.2 10.4 119 141-274 7-131 (285)
289 2ion_A PDCD4, programmed cell 58.2 34 0.0012 24.3 6.2 26 278-303 11-36 (152)
290 3eu9_A Huntingtin-interacting 58.1 45 0.0015 25.2 7.8 26 384-409 214-239 (240)
291 2fe3_A Peroxide operon regulat 58.0 45 0.0015 23.3 8.0 62 20-82 11-72 (145)
292 3bu8_A Telomeric repeat-bindin 57.3 60 0.002 24.5 9.9 22 109-130 122-143 (235)
293 3bqo_A Telomeric repeat-bindin 57.2 16 0.00055 27.0 4.4 18 320-337 126-143 (211)
294 3eyy_A Putative iron uptake re 57.0 38 0.0013 23.7 6.4 61 20-82 8-68 (145)
295 1mzb_A Ferric uptake regulatio 56.0 47 0.0016 22.9 7.2 61 21-82 8-69 (136)
296 2ijq_A Hypothetical protein; s 54.8 56 0.0019 23.4 7.4 14 325-338 46-59 (161)
297 4a1g_A Mitotic checkpoint seri 54.7 54 0.0018 23.2 9.3 50 190-239 84-134 (152)
298 2w57_A Ferric uptake regulatio 54.6 53 0.0018 23.1 7.1 63 20-83 6-69 (150)
299 2zu6_B Programmed cell death p 54.2 86 0.003 25.4 10.7 25 139-163 6-30 (307)
300 4gq2_M Nucleoporin NUP120; bet 53.6 1.6E+02 0.0055 28.6 11.9 85 282-371 816-926 (950)
301 4b4t_S RPN3, 26S proteasome re 53.3 1.2E+02 0.0041 26.8 12.5 25 68-92 233-257 (523)
302 1oyz_A Hypothetical protein YI 53.3 80 0.0028 24.8 25.5 122 239-370 140-262 (280)
303 2wvi_A Mitotic checkpoint seri 53.2 61 0.0021 23.3 9.0 50 225-274 79-129 (164)
304 4aez_C MAD3, mitotic spindle c 52.9 44 0.0015 25.5 6.3 85 15-102 96-186 (223)
305 3bu8_A Telomeric repeat-bindin 50.7 79 0.0027 23.9 7.7 21 180-200 123-143 (235)
306 4a1g_A Mitotic checkpoint seri 47.9 71 0.0024 22.6 9.7 51 120-170 84-135 (152)
307 1bpo_A Protein (clathrin); cla 46.4 1.5E+02 0.005 25.8 9.9 138 254-403 342-482 (494)
308 2cos_A Serine/threonine protei 45.2 26 0.00091 19.4 3.0 37 362-403 10-48 (54)
309 1bpo_A Protein (clathrin); cla 45.2 1.5E+02 0.0053 25.7 11.3 97 130-228 355-451 (494)
310 4gq2_M Nucleoporin NUP120; bet 44.4 2.3E+02 0.0079 27.5 11.8 50 171-220 897-950 (950)
311 2fe3_A Peroxide operon regulat 44.3 78 0.0027 22.0 7.5 34 356-389 35-68 (145)
312 1oai_A Nuclear RNA export fact 44.2 21 0.0007 20.4 2.7 22 9-30 33-55 (59)
313 3eu9_A Huntingtin-interacting 44.1 92 0.0031 23.4 7.5 19 72-90 45-63 (240)
314 2xig_A Ferric uptake regulatio 43.6 82 0.0028 22.1 7.6 58 127-185 18-75 (150)
315 3hra_A Ankyrin repeat family p 43.6 76 0.0026 23.1 6.8 12 78-89 14-25 (201)
316 3eyy_A Putative iron uptake re 43.3 74 0.0025 22.2 6.1 57 127-185 10-66 (145)
317 4aez_C MAD3, mitotic spindle c 43.0 1.1E+02 0.0037 23.4 8.9 49 328-376 131-184 (223)
318 4b4t_S RPN3, 26S proteasome re 43.0 1.1E+02 0.0038 27.0 8.1 66 311-377 231-304 (523)
319 3ltj_A Alpharep-4; protein eng 42.6 97 0.0033 22.7 20.2 28 205-233 151-178 (201)
320 2o03_A Probable zinc uptake re 42.4 65 0.0022 22.0 5.6 48 35-82 14-61 (131)
321 3jxi_A Vanilloid receptor-rela 42.3 22 0.00076 27.6 3.7 55 73-127 9-72 (260)
322 4ets_A Ferric uptake regulatio 42.1 92 0.0032 22.3 7.1 36 302-338 24-59 (162)
323 2o03_A Probable zinc uptake re 41.8 70 0.0024 21.8 5.7 44 348-391 16-59 (131)
324 2xig_A Ferric uptake regulatio 41.3 90 0.0031 21.9 8.4 62 20-82 16-77 (150)
325 3ltj_A Alpharep-4; protein eng 41.3 1E+02 0.0035 22.5 21.1 28 240-268 151-178 (201)
326 2b7e_A PRE-mRNA processing pro 41.0 33 0.0011 19.6 3.1 29 48-76 3-31 (59)
327 2fu4_A Ferric uptake regulatio 40.8 60 0.002 19.7 6.8 60 21-81 7-67 (83)
328 1mzb_A Ferric uptake regulatio 40.1 88 0.003 21.4 6.4 58 127-185 9-67 (136)
329 2w57_A Ferric uptake regulatio 39.4 92 0.0032 21.9 6.1 35 151-185 32-66 (150)
330 3aji_A 26S proteasome non-ATPa 39.3 98 0.0034 23.2 7.0 15 41-55 13-27 (231)
331 3mwm_A ZUR, putative metal upt 39.1 57 0.002 22.6 4.9 49 34-82 16-64 (139)
332 2r9g_A AAA ATPase, central reg 39.1 1.2E+02 0.0041 22.7 9.6 37 43-80 26-62 (204)
333 3eiq_C Programmed cell death p 39.0 1.7E+02 0.0058 24.4 13.8 59 68-128 56-116 (358)
334 3kea_A K1L; tropism, ANK repea 39.0 1.4E+02 0.0048 23.5 9.2 18 73-90 35-52 (285)
335 3hra_A Ankyrin repeat family p 38.3 70 0.0024 23.3 5.8 15 41-55 12-26 (201)
336 3mwm_A ZUR, putative metal upt 38.1 67 0.0023 22.2 5.2 42 350-391 21-62 (139)
337 2f6m_A Suppressor protein STP2 37.7 48 0.0016 19.4 3.5 44 34-78 5-48 (65)
338 3pvs_A Replication-associated 34.8 2.2E+02 0.0076 24.5 14.3 55 113-167 267-326 (447)
339 3bge_A Predicted ATPase; struc 34.8 1.4E+02 0.0048 22.2 7.7 21 44-64 20-40 (201)
340 2ijq_A Hypothetical protein; s 33.9 1.3E+02 0.0044 21.6 8.1 53 252-304 43-103 (161)
341 2r9g_A AAA ATPase, central reg 33.8 1.5E+02 0.0051 22.2 9.2 34 149-183 27-60 (204)
342 2crb_A Nuclear receptor bindin 32.1 79 0.0027 20.0 4.0 19 348-366 21-39 (97)
343 2keb_A DNA polymerase subunit 31.3 1.1E+02 0.0036 19.7 6.6 32 49-80 27-58 (101)
344 1k1a_A B-cell lymphoma 3-encod 31.3 1.7E+02 0.0057 22.0 9.4 20 75-94 15-34 (241)
345 3ctd_A Putative ATPase, AAA fa 29.7 1.8E+02 0.0062 21.9 8.5 36 149-184 48-83 (213)
346 3ctd_A Putative ATPase, AAA fa 28.7 1.9E+02 0.0064 21.8 8.9 63 36-98 37-107 (213)
347 2ion_A PDCD4, programmed cell 28.5 1.6E+02 0.0053 20.8 8.7 21 72-92 15-35 (152)
348 3ygs_P Procaspase 9; apoptosis 28.5 1E+02 0.0035 19.6 4.5 32 326-357 52-83 (97)
349 3bge_A Predicted ATPase; struc 28.2 1.9E+02 0.0064 21.6 9.4 35 148-182 19-53 (201)
350 1n11_A Ankyrin; clathrin, BAND 28.0 2.7E+02 0.0094 23.5 11.3 199 3-229 18-232 (437)
351 3pvs_A Replication-associated 27.8 3E+02 0.01 23.8 13.8 58 147-204 266-328 (447)
352 3b7b_A Euchromatic histone-lys 27.6 85 0.0029 23.7 4.8 20 250-269 216-235 (237)
353 2ynq_A ESSB; membrane protein, 27.6 1.7E+02 0.0058 20.9 8.6 77 288-368 20-99 (161)
354 2yru_A Steroid receptor RNA ac 27.6 1.4E+02 0.0047 20.1 4.9 42 53-94 48-89 (118)
355 2etb_A Transient receptor pote 27.4 1.5E+02 0.0052 22.6 6.3 24 40-63 8-31 (256)
356 2bn5_A PSI; nuclear protein, s 27.4 60 0.0021 15.7 2.7 24 382-405 7-30 (33)
357 2rg8_A Programmed cell death p 27.1 1.7E+02 0.006 20.9 5.9 23 141-163 15-37 (165)
358 3bqo_A Telomeric repeat-bindin 25.6 59 0.002 24.2 3.1 22 348-369 123-144 (211)
359 2br9_A 14-3-3E, 14-3-3 protein 25.6 2.3E+02 0.0079 21.8 9.8 171 240-410 4-206 (234)
360 3t8k_A Uncharacterized protein 25.3 2E+02 0.0067 20.9 8.0 25 110-134 44-68 (186)
361 3qil_A Clathrin heavy chain 1; 25.0 1.2E+02 0.0039 20.5 4.1 53 33-88 34-86 (125)
362 3t8k_A Uncharacterized protein 24.5 2E+02 0.007 20.8 8.8 21 43-63 47-67 (186)
363 2ekk_A UBA domain from E3 ubiq 24.3 86 0.0029 16.6 3.0 31 365-400 13-43 (47)
364 2rfa_A Transient receptor pote 24.2 2.2E+02 0.0076 21.1 8.9 17 75-91 43-59 (232)
365 2nsz_A Programmed cell death p 24.1 1.7E+02 0.0059 19.8 10.0 21 107-127 13-33 (129)
366 2pnn_A Transient receptor pote 24.0 2.2E+02 0.0077 22.0 6.8 55 38-92 17-80 (273)
367 2zu6_B Programmed cell death p 23.9 2.9E+02 0.0099 22.4 13.9 59 69-129 6-66 (307)
368 3mv2_A Coatomer subunit alpha; 23.7 3E+02 0.01 22.5 13.3 27 346-372 211-237 (325)
369 1zl8_A LIN-7; heterodimer, alp 23.6 98 0.0034 16.8 4.3 17 10-26 7-23 (53)
370 1bd8_A P19INK4D CDK4/6 inhibit 23.4 1.2E+02 0.004 20.9 4.6 15 77-91 10-24 (156)
371 2etb_A Transient receptor pote 23.4 1.9E+02 0.0066 22.0 6.2 23 180-202 8-30 (256)
372 2rfa_A Transient receptor pote 23.3 2.3E+02 0.0079 21.0 7.5 185 3-199 7-222 (232)
373 1ug3_A EIF4GI, eukaryotic prot 23.2 3.1E+02 0.011 22.5 8.9 148 140-301 15-166 (339)
374 2qfz_A TBC1 domain family memb 22.7 2.5E+02 0.0086 23.0 6.9 44 263-306 231-274 (345)
375 4fke_A Aminopeptidase N; zinc 21.7 5.5E+02 0.019 24.8 18.0 167 70-239 690-864 (909)
376 3l6a_A Eukaryotic translation 21.4 3.6E+02 0.012 22.5 13.8 22 2-23 18-39 (364)
377 2cwy_A Hypothetical protein TT 21.3 1.7E+02 0.0057 18.6 5.2 45 324-370 14-67 (94)
378 3t5v_B Nuclear mRNA export pro 20.4 3E+02 0.01 23.9 7.0 61 69-129 179-248 (455)
379 2pnn_A Transient receptor pote 20.1 2.6E+02 0.0088 21.6 6.4 21 181-201 20-40 (273)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.8e-39 Score=293.92 Aligned_cols=399 Identities=11% Similarity=-0.042 Sum_probs=299.4
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+.+.. .+++..+++.++.+|.+.|+
T Consensus 90 ~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 90 WRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhh
Confidence 567888899999999999999865 47778888899999999999999999988764 35678888999999999999
Q ss_pred hhHHHHHHHHHhcC---------------CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCC--------------
Q 015246 82 PDEANRVFQDMICG---------------DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGF-------------- 132 (410)
Q Consensus 82 ~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------- 132 (410)
+++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|+++.+.+.
T Consensus 166 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 245 (597)
T 2xpi_A 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHL 245 (597)
T ss_dssp HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhc
Confidence 99999998853221 2234578888899999999999999988888865432
Q ss_pred --------------------------------------------------------CCCHHHHHHHHHHHHhcCCHHHHH
Q 015246 133 --------------------------------------------------------VPELVTYNILIKGLCKAGRLRTAR 156 (410)
Q Consensus 133 --------------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~a~ 156 (410)
+++..+++.++..|.+.|++++|.
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 246 LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325 (597)
T ss_dssp SCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHH
Confidence 144555566666666666666666
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 015246 157 WILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236 (410)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (410)
++|+++.+.+. .+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+..
T Consensus 326 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 403 (597)
T 2xpi_A 326 AITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403 (597)
T ss_dssp HHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 66666665432 245556666666666666666666666666543 4566677777788888888888888888877652
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 015246 237 VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNC 316 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 316 (410)
+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.. +.+..+|..
T Consensus 404 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 480 (597)
T 2xpi_A 404 -PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNE 480 (597)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 2356678888888888888888888888887664 3466777888888888888888888888887753 446777888
Q ss_pred HHHHHHccCChHHHHHHHHhhccC--------C--chhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 015246 317 IVDRLGKDGKIDHAINVFESMEVK--------D--SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 386 (410)
Q Consensus 317 l~~~~~~~g~~~~A~~~~~~~~~~--------~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (410)
++.+|.+.|++++|.++|+++... + ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|..++.+
T Consensus 481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 888888888888888888877432 1 4577888888888888888888888887765 5577788888888
Q ss_pred HhhcCCHHHHHHHHHHHHHccCCC
Q 015246 387 LRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 387 ~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
|.+.|++++|.+.++++.+.+|++
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCC
Confidence 888888888888888888777654
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-36 Score=279.45 Aligned_cols=391 Identities=11% Similarity=-0.031 Sum_probs=318.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANR 87 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 87 (410)
+.|.+..+...+..+. .++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|...|++++|.+
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3445555555544433 367889999999999999999999999999864 4688899999999999999999999
Q ss_pred HHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCCH
Q 015246 88 VFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH---------------GFVPELVTYNILIKGLCKAGRL 152 (410)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~ 152 (410)
+|+.+... +++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99998643 788999999999999999999999999953322 2234688999999999999999
Q ss_pred HHHHHHHHHHhhCCC-----------------------------------------------------------------
Q 015246 153 RTARWILKELGDSGH----------------------------------------------------------------- 167 (410)
Q Consensus 153 ~~a~~~~~~~~~~~~----------------------------------------------------------------- 167 (410)
++|.+.|+++.+.+.
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 999999998865332
Q ss_pred -----CCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChh
Q 015246 168 -----APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIV 242 (410)
Q Consensus 168 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 242 (410)
+++..++..++.++.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+. .+.+..
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 374 (597)
T 2xpi_A 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAV 374 (597)
T ss_dssp TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHH
T ss_pred HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHH
Confidence 1566777778888888888888888888888765 557777888888888888888888888888765 344678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLG 322 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 322 (410)
++..++..|.+.|++++|.++|+++.+.. +.+..++..++..+.+.|++++|..+|+++.+.+ +.+..++..++.+|.
T Consensus 375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 375 TWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 88889999999999999999999988764 3367789999999999999999999999998763 457788999999999
Q ss_pred ccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCCc--HhhHHHHHHHHhhcCCH
Q 015246 323 KDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS----GVRIL--KSAQKAVVDGLRHSGCR 393 (410)
Q Consensus 323 ~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~ 393 (410)
+.|++++|.++|+++... ++.+|..++..+.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~ 532 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCH
Confidence 999999999999988653 6788999999999999999999999999876 55676 67899999999999999
Q ss_pred HHHHHHHHHHHHccCCC
Q 015246 394 REAKKIQSKIRMAKISH 410 (410)
Q Consensus 394 ~~a~~~~~~~~~~~~~~ 410 (410)
++|.+.++++.+.++++
T Consensus 533 ~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 533 DAAIDALNQGLLLSTND 549 (597)
T ss_dssp HHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999998877653
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=4.5e-32 Score=235.12 Aligned_cols=381 Identities=12% Similarity=0.043 Sum_probs=331.9
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
+...+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3567889999999999999998875 4566778888889999999999999999988864 4578899999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (410)
+++|.+.|+++.... +.+..+|..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998765 5567789999999999999999999999998864 33566788888999999999999999999
Q ss_pred HhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh
Q 015246 162 LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI 241 (410)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 241 (410)
+.... +.+..+|..+..++...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..... +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 98754 2367889999999999999999999999999886 5667788999999999999999999999998863 3367
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
.++..+..++...|++++|...++++.+.+ +.+..++..+...+...|++++|...++++.+. .+.+..++..+...+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHH
Confidence 888999999999999999999999999874 335778999999999999999999999999986 366788999999999
Q ss_pred HccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCC
Q 015246 322 GKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGC 392 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 392 (410)
...|++++|...++++... +..++..++.++.+.|++++|...|+++++.. |.+...+..+...+...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999999998876 56688999999999999999999999999753 4467788888877766653
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.4e-31 Score=229.60 Aligned_cols=365 Identities=12% Similarity=0.013 Sum_probs=320.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc
Q 015246 37 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY 116 (410)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (410)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+..++...|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3566788999999999999998864 3356777888889999999999999999988765 7788999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHH
Q 015246 117 TDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA 196 (410)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (410)
+++|...|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999998863 33667899999999999999999999999988542 3456677888899999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 015246 197 MKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK 276 (410)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 276 (410)
+.+.. +.+..++..+...+...|++++|...|+++.+.++ .+...+..+...+...|++++|...+.+..... +.+.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 99875 55678899999999999999999999999998743 367788899999999999999999999998774 3357
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHH
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 353 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 353 (410)
.++..+..++...|++++|...++++.+.+ +.+..++..+..++.+.|++++|...++++... +..++..++..+.
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 888999999999999999999999999863 445788999999999999999999999988765 6778999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 354 KAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
..|++++|...++++++.. +.+..++..++.++.+.|++++|.+.++++.+..|++
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999763 5568899999999999999999999999999887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.3e-32 Score=240.41 Aligned_cols=206 Identities=15% Similarity=0.205 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---------hh
Q 015246 14 AGYTILNRMREAGISPDVV-TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK---------PD 83 (410)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~ 83 (410)
.+..+.+.+.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4455556777776555443 5788899999999999999999999999999999999999999987664 57
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 164 DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
+.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999998888753
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6e-32 Score=237.76 Aligned_cols=207 Identities=12% Similarity=0.093 Sum_probs=181.2
Q ss_pred hhHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc---------h
Q 015246 48 SCSLDLLDEMLEMGIPPDV-WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY---------T 117 (410)
Q Consensus 48 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~ 117 (410)
..+..+.+.+.+.+..+.+ ..++.+|..|++.|++++|.++|++|.+.|++||..+|+.||.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455566777777665554 45888999999999999999999999999999999999999999987654 6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHH
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 197 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (410)
++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 015246 198 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE 254 (410)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (410)
.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.+..|+..||+.++..|...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-28 Score=219.15 Aligned_cols=397 Identities=12% Similarity=-0.019 Sum_probs=292.9
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
-..+.+.|++++|++.|+++.+.+ |+..+|..+..++...|++++|...++++.+.+ +.+..++..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhH
Confidence 356888999999999999999985 799999999999999999999999999999875 34678899999999999999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC--------------------------------
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-------------------------------- 130 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------------------- 130 (410)
++|...|+++...+ +++......++..+........+.+.+..+...
T Consensus 90 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 99999999998876 445444444444443333222222222111000
Q ss_pred ---CC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh-----CCC--------CCcHHHHHHHHHHHH
Q 015246 131 ---GF---------VPELVTYNILIKGLCK---AGRLRTARWILKELGD-----SGH--------APNAITYTTIMKCCF 182 (410)
Q Consensus 131 ---~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~~~~ 182 (410)
.. +.+...+......+.. .|++++|...++++.. ... +.+...+..+..++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 00 1113344444444443 7888888888888776 311 123556677777888
Q ss_pred hccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 015246 183 RNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYL 262 (410)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 262 (410)
..|++++|...++++.+.. |+...+..+..++...|++++|...++.+.... +.+...+..+..++...|++++|..
T Consensus 249 ~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 8888888888888888775 226777778888888888888888888887753 3356777788888888888888888
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC--
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-- 340 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 340 (410)
.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 326 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 326 DFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 888887764 2356677778888888888888888888887752 345667778888888888888888888877554
Q ss_pred -C------chhHHHHHHHHHh---cCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 341 -D------SFTYSSMVHNLCK---AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 341 -~------~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
+ ...+..++.++.. .|++++|...++++++.. +.+..++..++.++.+.|++++|...++++.+.+++
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 2 2277888888888 888888888888888764 456777778888888888888888888888777664
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=6.3e-26 Score=200.60 Aligned_cols=373 Identities=12% Similarity=0.030 Sum_probs=288.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 13 DAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDM 92 (410)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 92 (410)
..+...+..+.... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33445555555543 5677789999999999999999999999998863 347888999999999999999999999999
Q ss_pred hcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHH
Q 015246 93 ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL---VTYNIL------------IKGLCKAGRLRTARW 157 (410)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~ 157 (410)
.+.+ +.+..++..+..++...|++++|...|+++.+... .+. ..+..+ ...+...|++++|..
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8876 66788999999999999999999999999988632 234 555554 445889999999999
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 015246 158 ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV 237 (410)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 237 (410)
.|+++.... +.+...+..+..++...|++++|...++++.+.. +.+..++..+..++...|++++|...++++....
T Consensus 165 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 165 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998754 3477888999999999999999999999998875 6678889999999999999999999999998753
Q ss_pred CCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCc-----hHHHHHHHHHHHhcCChhHHHHHHH
Q 015246 238 QLDIVSYNTL------------INLYCKEGKLEAAYLLLDEMEKQGFECD-----KYTHTILIDGLCKAGNIKGARLHLE 300 (410)
Q Consensus 238 ~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (410)
+.+...+..+ ...+...|++++|...|+++.+.. |+ ...+..+...+.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2244444444 788899999999999999998763 33 3467888899999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH------------HHhcC-----Chhh
Q 015246 301 YMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN------------LCKAK-----RLPS 360 (410)
Q Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~------------~~~~~-----~~~~ 360 (410)
++.+.. +.+...+..+..+|...|++++|...++++... +...+..+..+ |...| +.++
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~ 398 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH
Confidence 998763 456889999999999999999999999988766 45566666533 33334 5677
Q ss_pred HHHHHHH-HHHcCCCCc-----------HhhHHHHHHHHhhcCCHHHHH
Q 015246 361 ASKLLLS-CLKSGVRIL-----------KSAQKAVVDGLRHSGCRREAK 397 (410)
Q Consensus 361 A~~~~~~-~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~ 397 (410)
+.+.|++ .++. .|| ...+..+..+|...|+.+.+.
T Consensus 399 ~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 399 IIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 7888887 4433 232 226677777787777776544
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=5e-26 Score=205.89 Aligned_cols=394 Identities=11% Similarity=0.044 Sum_probs=294.8
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
-..+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|++.++++.+.+ +.+..++..+..++...|++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCH
Confidence 356788999999999999999876 5678889999999999999999999999998875 34678888899999999999
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC------CCCCHHH------------------
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG------FVPELVT------------------ 138 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~------------------ 138 (410)
++|.+.|+. .... |+. ....+..+...+....|...++.+.... ..|+...
T Consensus 110 ~~A~~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLSV-LSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHHH-HhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 999999963 3322 221 1222344555566677777777775421 1122111
Q ss_pred ------------HHHHHHHHH--------hcCCHHHHHHHHHHHhhCCCCCc------HHHHHHHHHHHHhccchhHHHH
Q 015246 139 ------------YNILIKGLC--------KAGRLRTARWILKELGDSGHAPN------AITYTTIMKCCFRNRKYKLGLE 192 (410)
Q Consensus 139 ------------~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~ 192 (410)
...+...+. ..|++++|..+++++.+...... ..++..+...+...|++++|..
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 112222211 12478889999998887543211 2346666778888899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 015246 193 ILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF 272 (410)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 272 (410)
.++++.+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 265 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 340 (537)
T 3fp2_A 265 LLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN- 340 (537)
T ss_dssp HHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Confidence 999998874 457788888888999999999999999998864 3467888889999999999999999999998764
Q ss_pred CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---C------ch
Q 015246 273 ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D------SF 343 (410)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~------~~ 343 (410)
+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++... + ..
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 3356788888999999999999999999998863 455778888999999999999999999987654 1 12
Q ss_pred hHHHHHHHHHhc----------CChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 344 TYSSMVHNLCKA----------KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 344 ~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
.+.....++... |++++|...++++++.. +.+...+..++.+|.+.|++++|.+.++++.+..++
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 244556677777 99999999999998774 557788889999999999999999999998887664
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=6.3e-26 Score=200.57 Aligned_cols=348 Identities=14% Similarity=0.060 Sum_probs=279.4
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 51 LDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
...+.++... -+.+...+..++..+.+.|++++|..+|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus 12 ~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 12 DLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3344444433 23467788999999999999999999999998765 667899999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcH---HHHHHH------------HHHHHhccchhHHHHHHH
Q 015246 131 GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNA---ITYTTI------------MKCCFRNRKYKLGLEILS 195 (410)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~ 195 (410)
+ +.+...+..+..+|...|++++|...|+++..... .+. ..+..+ ...+...|++++|+..++
T Consensus 90 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 K-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 33688999999999999999999999999988542 233 455544 445889999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 015246 196 AMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 275 (410)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 275 (410)
++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.... +.+
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 244 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDH 244 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCh
Confidence 999875 6678889999999999999999999999998863 3478899999999999999999999999998763 223
Q ss_pred hHHHHHH------------HHHHHhcCChhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 276 KYTHTIL------------IDGLCKAGNIKGARLHLEYMNKIGFDSN-----LEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 276 ~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
...+..+ +..+...|++++|...++++.+. .|+ ...+..+..++.+.|++++|...++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 245 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444 78899999999999999999985 344 4478888999999999999999999886
Q ss_pred cC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHH------------HHhhcC-----CHHHHHH
Q 015246 339 VK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD------------GLRHSG-----CRREAKK 398 (410)
Q Consensus 339 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-----~~~~a~~ 398 (410)
.. +..+|..++.+|...|++++|...++++++.. +.+...+..+.. .|...| +.+++.+
T Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHH
Confidence 43 67889999999999999999999999999753 335666666662 344445 5667777
Q ss_pred HHHH-HHHccC
Q 015246 399 IQSK-IRMAKI 408 (410)
Q Consensus 399 ~~~~-~~~~~~ 408 (410)
.+++ ..+..|
T Consensus 402 ~y~~~~l~~~p 412 (450)
T 2y4t_A 402 AYRKLALQWHP 412 (450)
T ss_dssp HHHHHHHHSCG
T ss_pred HHHHHHHHhCC
Confidence 7776 444444
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.9e-25 Score=198.95 Aligned_cols=370 Identities=11% Similarity=-0.017 Sum_probs=296.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+......+.+.|++++|+..|+++.+.+ |+..++..+..++...|++++|.+.++++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778889999999999999999999965 689999999999999999999999999999876 6678899999999
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------------------------
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL---------------------------- 162 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------------------------- 162 (410)
+...|++++|...|+++...+. ++......++..+........+.+.+..+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999999999999999998753 34444444444444332222222222111
Q ss_pred -------hhCCC---------CCcHHHHHHHHHHHHh---ccchhHHHHHHHHHHH-----cCC--------CCChhhHH
Q 015246 163 -------GDSGH---------APNAITYTTIMKCCFR---NRKYKLGLEILSAMKR-----KGY--------TFDGFGYC 210 (410)
Q Consensus 163 -------~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~ 210 (410)
..... +.+...+......+.. .|++++|...++++.+ ... +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 00000 1124444444554554 8999999999999988 311 22345677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG 290 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (410)
.+...+...|++++|...++.+.+.... ...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 8888999999999999999999987433 8888899999999999999999999998874 346778899999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHH
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLS 367 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 367 (410)
++++|...++++.+.. +.+...+..+...+...|++++|...++++... ++..+..++..+...|++++|...+++
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999863 446778899999999999999999999988654 678899999999999999999999999
Q ss_pred HHHcCCCCc------HhhHHHHHHHHhh---cCCHHHHHHHHHHHHHccCC
Q 015246 368 CLKSGVRIL------KSAQKAVVDGLRH---SGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 368 ~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~ 409 (410)
+.+.. +.+ ...+..++..+.. .|++++|...++++....++
T Consensus 398 a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 447 (514)
T 2gw1_A 398 AIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447 (514)
T ss_dssp HHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc
Confidence 98653 222 2388899999999 99999999999999887765
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=2.5e-22 Score=171.94 Aligned_cols=329 Identities=16% Similarity=0.085 Sum_probs=203.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
++..+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34566667777777777777777777777653 2356667777777777777777777777776654 445666777777
Q ss_pred HHhhcCchHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGFV--PELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
++...|++++|...++++.+.... .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777665210 12333333311100 00122234455666666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
++|...++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666554 4455556666666666666666666666666542 335556666666666666666666666666
Q ss_pred HhCCCCCchHHHH------------HHHHHHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHH
Q 015246 268 EKQGFECDKYTHT------------ILIDGLCKAGNIKGARLHLEYMNKIGFDSNL----EAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 268 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~ 331 (410)
.+.... +...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++...|++++|.
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 654211 222221 23556777888888888888877653 2222 22445667778888888888
Q ss_pred HHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 332 NVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 332 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
..+++.... ++.++..++.++...|++++|...|+++++.. |.+...+..+..+..
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 888877653 56677778888888888888888888888653 334555555555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=2.4e-22 Score=172.05 Aligned_cols=317 Identities=14% Similarity=0.037 Sum_probs=240.8
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
++..+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34556667777777777777777777777654 4556777777777777777777777777777652 225566777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCC--CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 015246 145 GLCKAGRLRTARWILKELGDSGHA--PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 222 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (410)
.+...|++++|...++++.+.... .+...+..+..... ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777664210 12222222221110 01133346788899999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 223 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999873 3477889999999999999999999999999874 447788999999999999999999999999
Q ss_pred HhcCCCCCHHHHH------------HHHHHHHccCChHHHHHHHHhhccC---Cc----hhHHHHHHHHHhcCChhhHHH
Q 015246 303 NKIGFDSNLEAYN------------CIVDRLGKDGKIDHAINVFESMEVK---DS----FTYSSMVHNLCKAKRLPSASK 363 (410)
Q Consensus 303 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~l~~~~~~~~~~~~A~~ 363 (410)
.+.. +.+...+. .+...+.+.|++++|...++++... ++ ..+..+..++...|++++|+.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 8863 33333333 2366789999999999999988765 22 235567889999999999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 364 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
.++++++.. +.+..++..++.++...|++++|...++++.+..|+|
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 999999874 5578899999999999999999999999999988865
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=1.7e-22 Score=182.70 Aligned_cols=369 Identities=11% Similarity=0.015 Sum_probs=284.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
....+..+...+.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 34577888899999999999999999999875 3478899999999999999999999999998876 677889999999
Q ss_pred HHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCcHHH----------
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSG------HAPNAIT---------- 173 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~---------- 173 (410)
++...|++++|...|+.+ .. .|+ .....+..+...+....+...++.+.... ..|+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999743 32 122 12223444555556677888888775421 1122221
Q ss_pred --------------------HHHHHHHHH--------hccchhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHH
Q 015246 174 --------------------YTTIMKCCF--------RNRKYKLGLEILSAMKRKGYTFDG-------FGYCTVIAAFVK 218 (410)
Q Consensus 174 --------------------~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~ 218 (410)
...+...+. ..+++++|...++++.+.. +.+. .++..+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHh
Confidence 122222221 1257899999999998774 3332 246667778889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHH
Q 015246 219 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 298 (410)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 298 (410)
.|++++|...++.+.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999986 4557888899999999999999999999998875 34678899999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-
Q 015246 299 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR- 374 (410)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 374 (410)
++++.+.. +.+...+..+..++...|++++|...++++... ++..+..++.++...|++++|...++++++....
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99999864 445678999999999999999999999988765 6778999999999999999999999999865311
Q ss_pred ----CcHhhHHHHHHHHhhc----------CCHHHHHHHHHHHHHccCCC
Q 015246 375 ----ILKSAQKAVVDGLRHS----------GCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 375 ----~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~ 410 (410)
.....+.....++... |++++|...++++.+..+++
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 1112244556677777 99999999999999887753
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=9.3e-20 Score=162.46 Aligned_cols=365 Identities=12% Similarity=0.034 Sum_probs=296.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhH
Q 015246 13 DAGYTILNRMREAGISPDVVTYNSLIAGATR----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ----LGKPDE 84 (410)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 84 (410)
..+++.+....+. .++.++..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3345666666553 477788888888888 889999999999988863 66778888888888 889999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhh----cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCK----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTAR 156 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 156 (410)
|.++|++..+.+ +...+..|...|.. .+++++|...|++..+.| ++..+..+...|.. .+++++|.
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999988764 56677778888887 789999999999988875 56777788888887 78899999
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----cCCHHHHHHH
Q 015246 157 WILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDY 228 (410)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 228 (410)
+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999988864 67778888888887 889999999999988775 45567777777776 7899999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc-----CChhHHHHHH
Q 015246 229 MEQMVTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA-----GNIKGARLHL 299 (410)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~ 299 (410)
+++..+.+ +...+..+...|.. .+++++|...|++..+.+ ++..+..+...+... +++++|..++
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 99988763 45666777777777 889999999999988764 455677777888777 8999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHhhccC-CchhHHHHHHHHHh----cCChhhHHHHHHHHHHc
Q 015246 300 EYMNKIGFDSNLEAYNCIVDRLGKDG---KIDHAINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKS 371 (410)
Q Consensus 300 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 371 (410)
++..+.+ +...+..+...|...| ++++|...|++.... ++..+..+...|.. .+++++|..+|++..+.
T Consensus 320 ~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 320 TKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 9998864 4566777778887766 788999999988776 78888899998888 88999999999999877
Q ss_pred CCCCcHhhHHHHHHHHhh----cCCHHHHHHHHHHHHHcc
Q 015246 372 GVRILKSAQKAVVDGLRH----SGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 407 (410)
| ++..+..+...|.. .+++++|...|++....+
T Consensus 397 ~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 397 G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 5 46677888888887 899999999999988776
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=1.4e-19 Score=161.38 Aligned_cols=352 Identities=11% Similarity=0.014 Sum_probs=295.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cC
Q 015246 9 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ----LG 80 (410)
Q Consensus 9 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 80 (410)
.+++++|++.|++..+.| ++..+..+...|.. .+++++|.+.|++..+.| +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 789999999999999864 67788889999998 899999999999998864 66778888888888 88
Q ss_pred ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh----cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCH
Q 015246 81 KPDEANRVFQDMICGDLTPCTATFNIMLNGLCK----NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRL 152 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 152 (410)
++++|.++|++....+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 9999999999998765 46777788888887 789999999999998874 67888888899988 8999
Q ss_pred HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----cCCHHH
Q 015246 153 RTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKE 224 (410)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 224 (410)
++|...|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 99999999998864 56677778888876 789999999999998775 45566777777877 899999
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC---ChhHHH
Q 015246 225 ATDYMEQMVTDGVQLDIVSYNTLINLYCKE-----GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG---NIKGAR 296 (410)
Q Consensus 225 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~ 296 (410)
|...|++..+.+ +...+..+...|... +++++|...+++..+.+ +...+..+...+...| ++++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998763 556777788888877 89999999999999875 4566777888887766 789999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhccC-CchhHHHHHHHHHh----cCChhhHHHHHHH
Q 015246 297 LHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLS 367 (410)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~ 367 (410)
.++++..+.+ ++..+..+...|.. .+++++|...|++.... ++..+..+...|.. .+++++|...|++
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999999864 67788889999988 89999999999998877 78889999999988 8999999999999
Q ss_pred HHHcCCC-C-cHhhHHHHHHHH
Q 015246 368 CLKSGVR-I-LKSAQKAVVDGL 387 (410)
Q Consensus 368 ~~~~~~~-~-~~~~~~~l~~~~ 387 (410)
+.+.+.. | +......+...+
T Consensus 429 A~~~~~~~~~~~~a~~~l~~~~ 450 (490)
T 2xm6_A 429 ASTNDMNLFGTENRNITEKKLT 450 (490)
T ss_dssp HHHHHCCHHHHHHHHHHHTTSC
T ss_pred HHHCCCCCcCCHHHHHHHHhcC
Confidence 9987643 2 344444444433
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=3.1e-21 Score=163.14 Aligned_cols=286 Identities=12% Similarity=-0.060 Sum_probs=153.6
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIML 108 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (410)
.+...+..+...+...|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 444455556666666666666666666666543 2244455555566666666666666666665543 44455566666
Q ss_pred HHHhhcC-chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 109 NGLCKNR-YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 109 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
..+...| ++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence 6666666 6666666666666542 22445555666666666666666666666555322 1233444455555666666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCChhhHHHHHHHHHhcCCHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG--------VQLDIVSYNTLINLYCKEGKLEA 259 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~ 259 (410)
++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. .+.....+..+..++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 66666666655543 3444555555555555666666666555555431 02223445555555555555555
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 260 AYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 260 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 555555554442 2234444555555555555555555555554431 22334444444444
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=3.4e-21 Score=162.89 Aligned_cols=296 Identities=10% Similarity=-0.030 Sum_probs=156.9
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015246 64 PDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILI 143 (410)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (410)
.+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 345556666666666677777777666666554 4445555556666666666666666666666542 22455566666
Q ss_pred HHHHhcC-CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 015246 144 KGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 222 (410)
Q Consensus 144 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (410)
..+...| ++++|...+++...... .+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 6666666 66666666666655432 234445555555666666666666666555543 33334444455555555555
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 223 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
++|...+++..+.. +.+...+..+...+...|++++|...++++.+.......
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------------- 228 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN-------------------------- 228 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC--------------------------
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc--------------------------
Confidence 55555555555442 223444555555555555555555555554432100000
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhh
Q 015246 303 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 379 (410)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 379 (410)
....+....++..+..++...|++++|...+++.... +...+..+..++...|++++|.+.++++++.. +.+...
T Consensus 229 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 306 (330)
T 3hym_B 229 -EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFS 306 (330)
T ss_dssp -SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHH
T ss_pred -cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHH
Confidence 0000122344455555555555555555555544332 44555556666666666666666666665442 334555
Q ss_pred HHHHHHHH-hhcCC
Q 015246 380 QKAVVDGL-RHSGC 392 (410)
Q Consensus 380 ~~~l~~~~-~~~g~ 392 (410)
+..+..++ ...|+
T Consensus 307 ~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 307 VTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHhCc
Confidence 55555555 34444
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=2.7e-19 Score=161.13 Aligned_cols=396 Identities=12% Similarity=0.005 Sum_probs=290.4
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHH-HhcCChhH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCL-FQLGKPDE 84 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 84 (410)
+.+.|++++|..+|+++.+.. |.+...|...+..+.+.|+++.|..+|++..... |+...|...+... ...|+.+.
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~ 98 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPS 98 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhh
Confidence 467899999999999999864 5678899999999999999999999999999853 5777777777533 35677777
Q ss_pred HHH----HHHHHhcC-CCC-CChhHHHHHHHHHhh---------cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---
Q 015246 85 ANR----VFQDMICG-DLT-PCTATFNIMLNGLCK---------NRYTDNALRMFRGLQKHGFVPELVTYNILIKGL--- 146 (410)
Q Consensus 85 a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--- 146 (410)
|.+ +|+..... |.. ++...|...+..... .|+++.|..+|++..+....+....|.......
T Consensus 99 a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~ 178 (530)
T 2ooe_A 99 YKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGI 178 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhh
Confidence 765 77766542 433 456778777776654 789999999999998841111123443332211
Q ss_pred ----------HhcCCHHHHHHHHHHH------hhCC---CCCc--------HHHHHHHHHHHHhc----cch----hHHH
Q 015246 147 ----------CKAGRLRTARWILKEL------GDSG---HAPN--------AITYTTIMKCCFRN----RKY----KLGL 191 (410)
Q Consensus 147 ----------~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~ 191 (410)
...+++..|..+++.+ .+.. ++|+ ...|...+...... ++. ..+.
T Consensus 179 ~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~ 258 (530)
T 2ooe_A 179 NIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVM 258 (530)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHH
T ss_pred chhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHH
Confidence 1244567777777653 2221 2333 24555554433222 222 3677
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVK-------IGRLK-------EATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKL 257 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 257 (410)
..|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++
T Consensus 259 ~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 259 FAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 8899988774 5677788888887775 68876 8999999998632344678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCc-h-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCChHHHHHHH
Q 015246 258 EAAYLLLDEMEKQGFECD-K-YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR-LGKDGKIDHAINVF 334 (410)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~ 334 (410)
++|..+|+++.+. .|+ . ..|...+..+.+.|+++.|..+|++..+.. +.+...+...+.. +...|++++|..+|
T Consensus 338 ~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 338 EKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 9999999999986 343 2 478888888889999999999999999852 2233444333333 34689999999999
Q ss_pred HhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCc--HhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 335 ESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG-VRIL--KSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 335 ~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
++.... ++..|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+.++.+++.+.-|
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 988755 67889999999999999999999999999764 2232 34777778888889999999999999877544
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=5e-21 Score=164.52 Aligned_cols=276 Identities=12% Similarity=-0.036 Sum_probs=143.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 147 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (410)
.+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34445555555555555555555555443 3344445555555555555555555555554432 224444455555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 015246 148 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 227 (410)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 227 (410)
..|++++|...++++...... +...+..+... .. . ..+ ...+.. +..+...|++++|..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~----------~-~~~-~~~~~~-~~~~~~~~~~~~A~~ 202 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG----------G-AGL-GPSKRI-LGSLLSDSLFLEVKE 202 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------------------CT-THHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh----------h-hcc-cHHHHH-HHHHhhcccHHHHHH
Confidence 555555555555554443211 11111000000 00 0 000 000001 222225666666666
Q ss_pred HHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 228 YMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 228 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
.++++.+..... +..++..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 203 ~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 203 LFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 666666542211 35556666666666666666666666666543 2245566666666666666666666666666542
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---C-----------chhHHHHHHHHHhcCChhhHHHHHHHH
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D-----------SFTYSSMVHNLCKAKRLPSASKLLLSC 368 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~ 368 (410)
+.+...+..+..++.+.|++++|...++++... + ..+|..++.++...|++++|..++++.
T Consensus 282 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 282 -PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 334556666666666677777776666655433 2 456777777777777777777766543
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1.5e-18 Score=156.20 Aligned_cols=381 Identities=10% Similarity=0.015 Sum_probs=278.2
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 015246 19 LNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLT 98 (410)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 98 (410)
|++..+.. +-+...|..++.. .+.|++++|..+|+++.+. .|.+...|..++..+.+.|+++.|.++|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555554 5578899999984 7899999999999999986 44577889999999999999999999999999774
Q ss_pred CChhHHHHHHHHH-hhcCchHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 015246 99 PCTATFNIMLNGL-CKNRYTDNALR----MFRGLQK-HGFVP-ELVTYNILIKGLCK---------AGRLRTARWILKEL 162 (410)
Q Consensus 99 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 162 (410)
|+...|..++... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6888888777533 34577776665 6776654 34433 56677777776655 68899999999999
Q ss_pred hhCCCCCcHHHHHHHHHHH-------------HhccchhHHHHHHHHHH------HcC---CCCCh--------hhHHHH
Q 015246 163 GDSGHAPNAITYTTIMKCC-------------FRNRKYKLGLEILSAMK------RKG---YTFDG--------FGYCTV 212 (410)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~~--------~~~~~l 212 (410)
......+....|....... ...+++..|..++..+. +.. ++|+. ..|...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 8832222233444332211 13456777777776532 221 23331 234444
Q ss_pred HHHHHHc----CCH----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhC
Q 015246 213 IAAFVKI----GRL----KEATDYMEQMVTDGVQLDIVSYNTLINLYCK-------EGKLE-------AAYLLLDEMEKQ 270 (410)
Q Consensus 213 ~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 270 (410)
+...... ++. ..+..+|++.... .+.+...|..++..+.+ .|+++ +|..++++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4332221 222 4777889998886 34477888888888775 68887 899999999863
Q ss_pred CCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-H-HHHHHHHHHHHccCChHHHHHHHHhhccCCc---hhH
Q 015246 271 GFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN-L-EAYNCIVDRLGKDGKIDHAINVFESMEVKDS---FTY 345 (410)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~ 345 (410)
-.+.+...+..++..+...|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++....++ ..|
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 22345778888999999999999999999999985 454 3 5788888989999999999999999987633 233
Q ss_pred HHHHHH-HHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 346 SSMVHN-LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 346 ~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
...+.. +...|++++|..+|+++++.. +.+...|..++..+.+.|+.++|..+|++.....+
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 322222 336899999999999999763 55688999999999999999999999999987643
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=7.7e-21 Score=163.35 Aligned_cols=304 Identities=11% Similarity=-0.022 Sum_probs=182.6
Q ss_pred hhhcCChHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 6 YCQFVSFDAGYT-ILNRMREAGI-SP--DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 6 ~~~~g~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
+...|++++|++ .+++...... .| +...+..+...+...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 445677888887 7776554321 11 34568889999999999999999999999874 3477889999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKE 161 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 161 (410)
+++|.+.|+++.+.. +.+..++..+..++...|++++|...++++...... +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 999999999998876 668889999999999999999999999999986432 22222211000 00
Q ss_pred HhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 015246 162 LGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF--DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239 (410)
Q Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (410)
. ..+. ..+..+.. +...|++++|...++++.+.. +. +..++..+..++...|++++|...++++.... +.
T Consensus 178 ~----~~~~-~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 G----AGLG-PSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp -------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred h----hccc-HHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 0000 01111111 225555556666655555543 22 34455555555666666666666666555542 22
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----------C
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFD----------S 309 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~ 309 (410)
+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 34555555566666666666666666655542 224455555666666666666666666655543110 0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHH
Q 015246 310 NLEAYNCIVDRLGKDGKIDHAINVFE 335 (410)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (410)
...+|..+..++...|++++|..+++
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14556666666666666666666554
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=1.3e-20 Score=161.80 Aligned_cols=264 Identities=11% Similarity=-0.062 Sum_probs=179.0
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
+...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557788888888888888888888888765 5677888888888888888888888888888763 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCc-----------HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCC--ChhhHHH
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPN-----------AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTF--DGFGYCT 211 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ 211 (410)
.|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+.. +. +..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHH
Confidence 8888888888888888887632 22 1222334667777788888888888777764 33 5667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGN 291 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 291 (410)
+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+.. +.+..++..+..++...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 7777777778888887777777653 3356677777777777777777777777777653 2246667777777777777
Q ss_pred hhHHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHccCChHHHHHHHH
Q 015246 292 IKGARLHLEYMNKIGFD-----------SNLEAYNCIVDRLGKDGKIDHAINVFE 335 (410)
Q Consensus 292 ~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (410)
+++|...++++.+.... .+..+|..+..++...|+.+.+..+..
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777776653100 013445555555555555555554443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.87 E-value=1.3e-20 Score=161.81 Aligned_cols=262 Identities=10% Similarity=-0.037 Sum_probs=161.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 217 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (410)
.+..+...+.+.|++++|...|+++.+... .+..++..+..++...|++++|+..|+++.+.. +.+..++..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344455555555555555555555544321 244455555555555555555555555555543 334455555555555
Q ss_pred HcCCHHHHHHHHHHHHHcCCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHH
Q 015246 218 KIGRLKEATDYMEQMVTDGVQ---------LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CDKYTHTILIDGLC 287 (410)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 287 (410)
..|++++|...++++.+.... .....+..+...+...|++++|...++++.+.... ++..++..+...+.
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 556666666665555543111 01122333466677777778888877777765322 14667777777777
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHH
Q 015246 288 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKL 364 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 364 (410)
..|++++|...++++.+.. +.+..++..+..+|...|++++|...++++... +..++..++.++...|++++|...
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888888777652 445677777888888888888888888876554 566778888888888888888888
Q ss_pred HHHHHHcCCC-----------CcHhhHHHHHHHHhhcCCHHHHHHHHHH
Q 015246 365 LLSCLKSGVR-----------ILKSAQKAVVDGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 365 ~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 402 (410)
|+++++.... .+...|..+..++...|+.+.+.++.++
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888754211 1357788888899999999888877654
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=6.8e-19 Score=156.46 Aligned_cols=368 Identities=9% Similarity=-0.080 Sum_probs=251.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc--------CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC-----
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM--------GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG----- 95 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 95 (410)
.....|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567999999999999999999999887642 11224567899999999999999999999887642
Q ss_pred C--CCCChhHHHHHHHHHhh--cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCC
Q 015246 96 D--LTPCTATFNIMLNGLCK--NRYTDNALRMFRGLQKHGFVPELVTYNILIKG---LCKAGRLRTARWILKELGDSGHA 168 (410)
Q Consensus 96 ~--~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 168 (410)
+ ......++..+..++.. .+++++|...|++..+..+ .++..+..+..+ +...++.++|++.+++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 11234566655555554 4579999999999988633 255555555544 3456778889999998877542
Q ss_pred CcHHHHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhH
Q 015246 169 PNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSY 244 (410)
Q Consensus 169 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 244 (410)
.+...+..+...+.. .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +.+..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 345556555544443 467889999999998876 6677888999999999999999999999999863 3356666
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 245 NTLINLYCKE-------------------GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 245 ~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
..+..+|... +.++.|...+++..+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6666655432 23567788888877664 335667888999999999999999999999886
Q ss_pred CCCCCHH--HHHHHHH-HHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHH
Q 015246 306 GFDSNLE--AYNCIVD-RLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 382 (410)
Q Consensus 306 ~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 382 (410)
...|... .+..+.. .....|++++|+..+++....++..+.. .+....+.+++++.++.+ |.+..++..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~-------~~~~~~l~~~~~~~l~~~-p~~~~~~~~ 435 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK-------EKMKDKLQKIAKMRLSKN-GADSEALHV 435 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH-------HHHHHHHHHHHHHHHHHC-C-CTTHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH-------HHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4333221 2233332 3457899999999999887764443321 122344556677776654 667889999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 383 VVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 383 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
++.+|...|++++|.+.|++..+.++.
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHCC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999877653
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=2.5e-19 Score=147.57 Aligned_cols=274 Identities=10% Similarity=-0.010 Sum_probs=205.6
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
++-....|++..|+..++........+.......+.++|...|+++.|+..++. ..+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 345566899999999888765542221133556678899999999999886654 2356777888888889999999
Q ss_pred hHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 266 (410)
++|++.++++...+. |.+...+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999987764 44556667777889999999999999887 45778888899999999999999999999
Q ss_pred HHhCCCCCchHHH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---
Q 015246 267 MEKQGFECDKYTH---TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--- 340 (410)
Q Consensus 267 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 340 (410)
+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++...
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 98774 443211 12223344558999999999999887 4667888999999999999999999999987654
Q ss_pred CchhHHHHHHHHHhcCChhh-HHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHH
Q 015246 341 DSFTYSSMVHNLCKAKRLPS-ASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 399 (410)
++.++..++..+...|+.++ +.++++++++. .|+.... .....+.+.++++..-
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHHHHHHHH
Confidence 77788889989999999876 56888888866 3443322 2334455555555443
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=5.8e-19 Score=148.96 Aligned_cols=267 Identities=10% Similarity=-0.069 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|++++|..+++++.+.. +.+..++..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445566667777777777777777776653 2356666777777777777777777777776654 4566677777777
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHH
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNIL--------------IK-GLCKAGRLRTARWILKELGDSGHAPNAITYT 175 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (410)
+...|++++|...++++.+.... +...+..+ .. .+...|++++|...++++.+... .+...+.
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~ 176 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHA 176 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHH
Confidence 77777777777777777765322 22223222 22 36667778888888887776532 3567777
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 255 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 255 (410)
.+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 77778888888888888888877764 4556677777888888888888888888877753 335677777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCC-----------chHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 256 KLEAAYLLLDEMEKQGFEC-----------DKYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 256 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
++++|...++++.+..... +...+..+..++...|++++|..++++..
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888888888876653221 46677778888888888888888776543
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=4e-19 Score=149.95 Aligned_cols=267 Identities=9% Similarity=-0.061 Sum_probs=182.2
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 34456677788888899999999988887765 5577788888888888899999998888888763 336778888888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHH--------------HH-HHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPNAITYTTI--------------MK-CCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (410)
.+...|++++|...++++...... +...+..+ .. .+...|++++|...++++.+.. +.+...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 888888888888888888765322 22222222 22 2556677777777777777664 4456666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 777777777777777777777776652 2345666677777777777777777777776653 23455666677777777
Q ss_pred CChhHHHHHHHHHHhcCCCC-----------CHHHHHHHHHHHHccCChHHHHHHHHhh
Q 015246 290 GNIKGARLHLEYMNKIGFDS-----------NLEAYNCIVDRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (410)
|++++|...++++.+..... +...+..+..++...|++++|..++++.
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77777777777766542111 3455666666666666666666665543
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.86 E-value=3.9e-20 Score=155.60 Aligned_cols=289 Identities=13% Similarity=0.092 Sum_probs=135.8
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
+-+.|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|
T Consensus 13 l~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHH
Confidence 346788999999999983 2359999999999999999999999653 5777899999999999999999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 015246 86 NRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDS 165 (410)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 165 (410)
.+.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 9988777664 4557888899999999999999888874 367789999999999999999999999976
Q ss_pred CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 015246 166 GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN 245 (410)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 245 (410)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 36899999999999999999999988 26789999999999999999996655442 23444566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCC------CHHHHHHHH
Q 015246 246 TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK-IGFDS------NLEAYNCIV 318 (410)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~ 318 (410)
.++..|.+.|.+++|..+++...... +-....|+.+..+|++- .+++..+.++.... .+++| +...|..++
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 78899999999999999999998664 44566777777777654 34444444443322 23333 467789999
Q ss_pred HHHHccCChHHHHHHHHhh
Q 015246 319 DRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~ 337 (410)
..|...++++.|....-+-
T Consensus 290 ~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhhchHHHHHHHHHhC
Confidence 9999999999887755443
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=7.8e-18 Score=149.63 Aligned_cols=353 Identities=11% Similarity=-0.024 Sum_probs=242.9
Q ss_pred hhhhhcCChHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC------C-CCChHh
Q 015246 4 DAYCQFVSFDAGYTILNRMREA--------GISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMG------I-PPDVWS 68 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~ 68 (410)
..+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.. . .....+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 4677899999999999987653 123346689999999999999999999998876531 1 113455
Q ss_pred HHHHHHHHHh--cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH---hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 015246 69 YNSLMHCLFQ--LGKPDEANRVFQDMICGDLTPCTATFNIMLNGL---CKNRYTDNALRMFRGLQKHGFVPELVTYNILI 143 (410)
Q Consensus 69 ~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 143 (410)
+.....++.. .+++++|.+.|++..+.. |.+...+..+..++ ...++.++|++.+++..+.. +.+...+..+.
T Consensus 139 ~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~ 216 (472)
T 4g1t_A 139 DCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHH
Confidence 6666555554 457999999999998775 45566666665553 34577788999999988763 33566666665
Q ss_pred HHHHh----cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 144 KGLCK----AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 144 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
..+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...+++..+.. |.+..++..+..+|...
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 55544 467889999999987754 3467788899999999999999999999999875 55666676666655432
Q ss_pred -------------------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchH--H
Q 015246 220 -------------------GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKY--T 278 (410)
Q Consensus 220 -------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 278 (410)
+..+.|...++...+.. +.+...+..+...+...|++++|...|++..+....+... .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 23567888888887763 3466788899999999999999999999998875443321 2
Q ss_pred HHHHHH-HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhcc---CCchhHHHHHHHHHh
Q 015246 279 HTILID-GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEV---KDSFTYSSMVHNLCK 354 (410)
Q Consensus 279 ~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 354 (410)
+..+.. .....|++++|+..+++..+. .|+....... ...+.++++.... .++.+|..++.++..
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 233332 335789999999999999884 4553322222 2233344444332 278899999999999
Q ss_pred cCChhhHHHHHHHHHHcC
Q 015246 355 AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 355 ~~~~~~A~~~~~~~~~~~ 372 (410)
.|++++|++.|+++++.+
T Consensus 443 ~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 443 NEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHCC-------------
T ss_pred cCCHHHHHHHHHHHHhcC
Confidence 999999999999999765
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=9.6e-19 Score=144.10 Aligned_cols=220 Identities=11% Similarity=0.021 Sum_probs=100.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 015246 71 SLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVP-ELVTYNILIKGLCKA 149 (410)
Q Consensus 71 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 149 (410)
.+.++|...|+++.|...++. . -+|+..++..+...+...++.++|++.++++...+..| +...+..+...+...
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~ 114 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD 114 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence 344444455555444443322 1 13344444444444545555555555555544433222 233334444445555
Q ss_pred CCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH---HHHHHHHHHcCCHHHHH
Q 015246 150 GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY---CTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~ 226 (410)
|++++|++.+++ +.+...+..++.++.+.|++++|.+.++++.+.. |+.... ..++..+...|++++|.
T Consensus 115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 555555555443 2344444444555555555555555555554442 221110 11112222334555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhH-HHHHHHHHHh
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG-ARLHLEYMNK 304 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 304 (410)
.+|+++.+. .+.+...++.+..++.+.|++++|...++++.+.. +.++.++..++..+...|+.++ +..+++++.+
T Consensus 187 ~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555554 23344555555555555555555555555555442 2244445555555555555543 3455555554
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=2.9e-19 Score=150.38 Aligned_cols=281 Identities=12% Similarity=0.130 Sum_probs=137.2
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHH
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALR 122 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 122 (410)
+.|++++|.+.++++. ++.+|..++.++.+.|++++|.+.|.+ .+|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6788999999999983 345899999999999999999999965 3577799999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC
Q 015246 123 MFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY 202 (410)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 202 (410)
.++...+. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877774 4467888999999999999999988884 367789999999999999999999999976
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 015246 203 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 282 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 282 (410)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 47899999999999999999999988 27899999999999999999996655442 2334445578
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc--CChHHHHHHHHhhccC--------CchhHHHHHHHH
Q 015246 283 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD--GKIDHAINVFESMEVK--------DSFTYSSMVHNL 352 (410)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~ 352 (410)
+..|.+.|.+++|..+++...... +-....|+.+..+|++- ++..+.++.|..-... +...|..+...|
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly 292 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLY 292 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998764 55577888888777764 3445555555433221 678899999999
Q ss_pred HhcCChhhHHHHH
Q 015246 353 CKAKRLPSASKLL 365 (410)
Q Consensus 353 ~~~~~~~~A~~~~ 365 (410)
.+.++++.|....
T Consensus 293 ~~~~e~d~A~~tm 305 (449)
T 1b89_A 293 DKYEEYDNAIITM 305 (449)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhchHHHHHHHH
Confidence 9999999887643
No 33
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.84 E-value=1e-18 Score=153.37 Aligned_cols=373 Identities=12% Similarity=0.015 Sum_probs=256.2
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLL---SCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL 79 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (410)
...+.+.|++++|+++|++..+.| +..++..+...|...|+. ++|...|++..+. ++..+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 456778999999999999998876 344455566667778888 8999999998864 556677777755555
Q ss_pred C-----ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 80 G-----KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD---NALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 80 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
+ ++++|.++|++....| .++ .+..|...|...+..+ ++.+.+......| ++.....+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG-EGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT-CSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 5 7889999999998876 333 6666777777665543 4555555555443 35566677788888875
Q ss_pred HHHH----HHHHHHHhhCCCCCcHHHHHHHHHHHHhcc---chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc----C
Q 015246 152 LRTA----RWILKELGDSGHAPNAITYTTIMKCCFRNR---KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI----G 220 (410)
Q Consensus 152 ~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 220 (410)
++++ ..+++.... .++..+..+...|...| ++++|++.|++..+.+ +++...+..+...|... +
T Consensus 157 ~~~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 157 YDQHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGGGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cccCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 5444 444444433 23337778888888899 9999999999999988 66666656677777654 6
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC-----Ch
Q 015246 221 RLKEATDYMEQMVTDGVQLDIVSYNTLINL-Y--CKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-----NI 292 (410)
Q Consensus 221 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 292 (410)
++++|...|++.. +-++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++
T Consensus 232 d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999987 3466677777776 4 56899999999999999876 5667777777776 45 99
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhccC-CchhHHHHHHHHHh----cCChhhHHH
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASK 363 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~ 363 (410)
++|..+|++.. . .+......+...|.. ..++++|...|++.... ++.....+...|.. .+++.+|..
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999999887 3 356777778877776 44899999999998877 78888888888874 568999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 364 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+|+...+.| .++.......+......++.++|.++.++.++.
T Consensus 380 ~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 380 FSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 999999887 444443333344444555677888887776554
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=2.8e-16 Score=147.70 Aligned_cols=346 Identities=13% Similarity=0.086 Sum_probs=241.2
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAG--ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL 79 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (410)
.+++|...|.+.+|+++++++.-.+ ...+...-+.++....+. +..+..+..+.+... + ...+...+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhC
Confidence 3567778888888888888888432 112344555566666665 445666665555421 1 33366777788
Q ss_pred CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015246 80 GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWIL 159 (410)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (410)
|.+++|..+|++.. ......+.++. ..+++++|.++.++.. ++.+|..+..++...|++++|+..|
T Consensus 1063 glyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888888852 11222233322 6678888888877552 5778888888888899999988888
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 015246 160 KELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239 (410)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (410)
.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|.+.+++++...+. . .+
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 653 466777888888888899999988888877664 33333445888888888887544432 2 24
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
+...+..+...|...|++++|..+|..+ ..|..++..+.+.|+++.|.+.+++. .+..+|..+..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence 5566777888888888999998888875 36888888888888888888888776 24577888888
Q ss_pred HHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH--hhcCCHHHHH
Q 015246 320 RLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL--RHSGCRREAK 397 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~ 397 (410)
+|...|++..|...... ...++..+..++..|.+.|.+++|+.+++..+..+ +-....|..+..+| .+.++..++.
T Consensus 1259 acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1259 ACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred HHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888888887764 33366677788888888888999988888887443 22344554444444 3445555555
Q ss_pred HHHH
Q 015246 398 KIQS 401 (410)
Q Consensus 398 ~~~~ 401 (410)
+.|.
T Consensus 1337 k~f~ 1340 (1630)
T 1xi4_A 1337 ELFW 1340 (1630)
T ss_pred HHHH
Confidence 5554
No 35
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.80 E-value=3e-15 Score=140.93 Aligned_cols=346 Identities=12% Similarity=0.112 Sum_probs=252.2
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
..+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -++.+|..+..++...|+++
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHH
Confidence 45677888899998888863 12222333333 677888888888865 25778888999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
+|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.+++++.....
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 999988663 566778888999999999999999998887764 33333345888888888887544332
Q ss_pred hCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhh
Q 015246 164 DSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVS 243 (410)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 243 (410)
+ .++...+..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 2 245566777888899999999999999874 36888888999999999999888876 26688
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +-....|+.+..++++
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 888888888888888888766542 3356667788999999999999999998887653 3345566666666655
Q ss_pred --cCChHHHHHHHHhhccC--------CchhHHHHHHHHHhcCChhhHHHHH-------------HHHHHcCCCCcHhhH
Q 015246 324 --DGKIDHAINVFESMEVK--------DSFTYSSMVHNLCKAKRLPSASKLL-------------LSCLKSGVRILKSAQ 380 (410)
Q Consensus 324 --~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~-------------~~~~~~~~~~~~~~~ 380 (410)
.++..++.+.|..-... +...|..++..|.+.|+++.|...+ +..+ ....++..|
T Consensus 1327 y~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i--~kv~n~ely 1404 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII--TKVANVELY 1404 (1630)
T ss_pred CCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh--cccccHHHH
Confidence 34555666666644332 5677999999999999999888322 2222 124466777
Q ss_pred HHHHHHHhhcC---------------CHHHHHHHHH
Q 015246 381 KAVVDGLRHSG---------------CRREAKKIQS 401 (410)
Q Consensus 381 ~~l~~~~~~~g---------------~~~~a~~~~~ 401 (410)
...+..|...+ +.+.+.++|.
T Consensus 1405 ykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1405 YRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 77777776666 7777777766
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=4.7e-17 Score=132.24 Aligned_cols=223 Identities=13% Similarity=0.063 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC--CCC----hhhH
Q 015246 136 LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFD----GFGY 209 (410)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 209 (410)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++++.+... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4456667777777777777777777776655 5666677777777777777777777777665421 111 3566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 015246 210 CTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA 289 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 289 (410)
..+..++...|++++|...+++.... .|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 66667777777777777777777664 2332 33455566677777777666542 22345566666666677
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLL 366 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 366 (410)
|++++|...++++.+.. +.+...+..+..++...|++++|...+++.... ++..+..+..++...|++++|...++
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77777777777666642 334556666666666666666666666665443 44556666666666666666666666
Q ss_pred HHHHc
Q 015246 367 SCLKS 371 (410)
Q Consensus 367 ~~~~~ 371 (410)
++++.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.78 E-value=1.7e-16 Score=139.35 Aligned_cols=347 Identities=12% Similarity=0.043 Sum_probs=237.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh---hHHHHHHHHHhcCCCCCChhHHHHHHHHHhh
Q 015246 37 LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP---DEANRVFQDMICGDLTPCTATFNIMLNGLCK 113 (410)
Q Consensus 37 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (410)
+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|.++|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5677788999999999999998875 344555666777778888 8999999998753 55666667764555
Q ss_pred cC-----chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 114 NR-----YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR---TARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 114 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
.+ +.++|...|++..+.|.. ..+..|...|...+..+ .+.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44 889999999999987643 36667777787766544 3455555555443 3445666777777777
Q ss_pred chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CCHH
Q 015246 186 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG---RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKE----GKLE 258 (410)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 258 (410)
.++++......+.+.-...++..+..+...|...| +.++|...|++..+.|.. +...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 66555555444433322334448888889999999 999999999999988643 555556677777654 7999
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHH-H--HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-----ChHHH
Q 015246 259 AAYLLLDEMEKQGFECDKYTHTILIDG-L--CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-----KIDHA 330 (410)
Q Consensus 259 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A 330 (410)
+|...|++.. .| ++..+..+... + ...+++++|..+|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999988 43 55566666666 3 46899999999999999876 6677777888877 55 99999
Q ss_pred HHHHHhhccCCchhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhh----cCCHHHHHHHHHH
Q 015246 331 INVFESMEVKDSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH----SGCRREAKKIQSK 402 (410)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~ 402 (410)
...|++....++..+..+...|.. ..++++|..+|++..+.| +......+...|.. ..+.++|..++++
T Consensus 307 ~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 307 EAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 999999883388888888888876 448999999999999876 34455667776653 4589999999998
Q ss_pred HHHccC
Q 015246 403 IRMAKI 408 (410)
Q Consensus 403 ~~~~~~ 408 (410)
..+.|.
T Consensus 384 A~~~g~ 389 (452)
T 3e4b_A 384 AKAQDT 389 (452)
T ss_dssp HHTTCC
T ss_pred HHHCCC
Confidence 877653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.1e-16 Score=128.42 Aligned_cols=228 Identities=9% Similarity=-0.037 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCC--CCChhHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDL--TPCTATFNIMLN 109 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 109 (410)
..+..+...+...|++++|...|++..+.. .+..++..+..++...|++++|.+.++++.+... .++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-------- 75 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY-------- 75 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH--------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch--------
Confidence 344445555555555555555555555544 3445555555555555555555555555443210 0010
Q ss_pred HHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhH
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 189 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 189 (410)
+.....+..+...+...|++++|...+++..... |+. ..+...|++++
T Consensus 76 -----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 76 -----------------------KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEK 123 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHH
Confidence 0002344444444444444444444444444421 221 12333445555
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015246 190 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
|...++.+.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++.+
T Consensus 124 a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555555555442 3334444555555555555555555555555542 22444555555555555555555555555554
Q ss_pred CCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 270 QGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.. +.+...+..+...+...|++++|...+++..+
T Consensus 202 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 202 KD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 42 22344555555555555666666555555544
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=6.9e-17 Score=127.25 Aligned_cols=209 Identities=13% Similarity=0.001 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIML 108 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (410)
++...+..+...+...|++++|...|++..+.. |.+...+..+..++...|++++|...|++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344455555555555555555555555555432 1244455555555555555555555555555443 33444555555
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchh
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 188 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (410)
.++...+.. . +. .....|++++|+..+++..+..+ .+...+..+..++...|+++
T Consensus 81 ~~~~~~~~~------------~---~~---------~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 81 EAYVALYRQ------------A---ED---------RERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHT------------C---SS---------HHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhh------------h---hh---------hcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChH
Confidence 555544000 0 00 00000555555555555444321 13444444445555555555
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 189 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
+|+..+++..+.. .+...+..+..++...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.
T Consensus 136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555444 344444455555555555555555555555432 223444445555555555555555555443
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.77 E-value=2.7e-16 Score=128.90 Aligned_cols=240 Identities=11% Similarity=0.018 Sum_probs=135.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChh----hHHHHH
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF----GYCTVI 213 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~ 213 (410)
.+......+...|++++|...+++..+... .+...+..+..++...|++++|+..++++.+.. ++.. .+..+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHH
Confidence 444555666667777777777776665432 233456666666666777777777777666632 2222 255666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChh
Q 015246 214 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIK 293 (410)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 293 (410)
.++...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 66666677777777776666642 2245566666666666666666666666666552 224445555552333344666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHhhccC-----C------chhHHHHHHHHHhcCChh
Q 015246 294 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK-----D------SFTYSSMVHNLCKAKRLP 359 (410)
Q Consensus 294 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-----~------~~~~~~l~~~~~~~~~~~ 359 (410)
+|...++++.+.. +.+...+..+..++...|+ +++|...+++.... + ..+|..+...+...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 6666666666542 2234555555555555555 55555555544332 1 134555555666666666
Q ss_pred hHHHHHHHHHHcCCCCcHhhHHHHH
Q 015246 360 SASKLLLSCLKSGVRILKSAQKAVV 384 (410)
Q Consensus 360 ~A~~~~~~~~~~~~~~~~~~~~~l~ 384 (410)
+|.+.++++++.. |.+......+.
T Consensus 239 ~A~~~~~~al~~~-p~~~~a~~~l~ 262 (272)
T 3u4t_A 239 KADAAWKNILALD-PTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHC
T ss_pred HHHHHHHHHHhcC-ccHHHHHHHhh
Confidence 6666666666543 33444444333
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.76 E-value=3.2e-16 Score=123.45 Aligned_cols=198 Identities=15% Similarity=0.025 Sum_probs=88.2
Q ss_pred CChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHH
Q 015246 99 PCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIM 178 (410)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 178 (410)
++...+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+..+ .+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 334444444444444444444444444444432 12344444444444444555555444444444321 1333444444
Q ss_pred HHHHhc-----------cchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 179 KCCFRN-----------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 179 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
.++... |++++|+..+++..+.. |.+...+..+..++...|++++|+..+++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 444444 55555555555555543 3344445555555555555555555555555543 344555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 248 INLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555555442 223444444455555555555555554443
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=3.9e-15 Score=122.03 Aligned_cols=223 Identities=9% Similarity=-0.016 Sum_probs=173.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHH
Q 015246 135 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYC 210 (410)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 210 (410)
++.++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777888888888888888888888773 345667777788888 888888888888888775 566777
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 015246 211 TVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTIL 282 (410)
Q Consensus 211 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 282 (410)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 78888888 888888888888888763 66777778888887 888888888888888765 45566677
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHhhccC-CchhHHHHHHHHH
Q 015246 283 IDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHAINVFESMEVK-DSFTYSSMVHNLC 353 (410)
Q Consensus 283 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~ 353 (410)
...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++.... ++..+..+...+.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQY 229 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 777777 788888888888887753 45667777777777 88888888888877666 5667777777777
Q ss_pred h----cCChhhHHHHHHHHHHcC
Q 015246 354 K----AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 354 ~----~~~~~~A~~~~~~~~~~~ 372 (410)
. .+++++|.+.|++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 7 788888888888887765
No 43
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=157.50 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHH---cCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLE---MGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNI 106 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (410)
-..+|+++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCch-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015246 107 MLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKA 149 (410)
Q Consensus 107 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (410)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 99999999984 78999999999999999999999888655554
No 44
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.3e-18 Score=156.70 Aligned_cols=119 Identities=11% Similarity=0.152 Sum_probs=110.0
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhc---CCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMIC---GDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNIL 142 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (410)
..+|+++|++|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc
Q 015246 143 IKGLCKAGRL-RTARWILKELGDSGHAPNAITYTTIMKCCFRN 184 (410)
Q Consensus 143 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (410)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 9999999984 78999999999999999999999888655443
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.75 E-value=1.4e-14 Score=118.73 Aligned_cols=223 Identities=13% Similarity=-0.014 Sum_probs=140.4
Q ss_pred ChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCcHHHHH
Q 015246 100 CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----AGRLRTARWILKELGDSGHAPNAITYT 175 (410)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (410)
+..++..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4555666666666667777777777666662 244556666666666 667777777777666643 455666
Q ss_pred HHHHHHHh----ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 176 TIMKCCFR----NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK----IGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 176 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
.+...+.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 667777777777666653 45556666666666 667777777777666643 44555556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 248 INLYCK----EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 248 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
...|.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 666777777776666553 34555566666666 667777777776666643 2455556666
Q ss_pred HHHc----cCChHHHHHHHHhhccC
Q 015246 320 RLGK----DGKIDHAINVFESMEVK 340 (410)
Q Consensus 320 ~~~~----~g~~~~A~~~~~~~~~~ 340 (410)
+|.. .+++++|...+++....
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHc
Confidence 6666 66666776666655443
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=5.3e-16 Score=127.31 Aligned_cols=241 Identities=9% Similarity=-0.138 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHhhCCC---CCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHH
Q 015246 150 GRLRTARWILKELGDSGH---APNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 226 (410)
|++++|+..++++.+... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 445555555555544321 1123444555555555555555555555555543 334555555566666666666666
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
..++++.+.. +.+...+..+..++...|++++|...++++.+.. |+..........+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666665542 2245556666666666666666666666665542 222222333333445566777777776655542
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhh
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 379 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 379 (410)
+++... ..++..+...++.++|...+++.... +...+..++.++...|++++|...|+++++. .|+.
T Consensus 175 -~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN-- 248 (275)
T ss_dssp -CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--
T ss_pred -CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--
Confidence 233222 23555666666667777777766655 1456777778888888888888888888754 3322
Q ss_pred HHHHHHHHhhcCCHHHHHHHH
Q 015246 380 QKAVVDGLRHSGCRREAKKIQ 400 (410)
Q Consensus 380 ~~~l~~~~~~~g~~~~a~~~~ 400 (410)
+.....++...|++++|.+.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 223355667777777777765
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=3.2e-16 Score=128.65 Aligned_cols=222 Identities=10% Similarity=-0.054 Sum_probs=97.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFV 217 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 217 (410)
.+..+...+...|++++|...|+++..... .+...+..+..++...|++++|...++++.+.. +.+...+..+..++.
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHH
Confidence 344444444444444444444444444321 234444444444444444444444444444432 233444444444455
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHH
Q 015246 218 KIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARL 297 (410)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 297 (410)
..|++++|...++++.+. .|+.......+..+...|++++|...+.+..... +++... ..++..+...++.++|..
T Consensus 123 ~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~ 198 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLME 198 (275)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHH
Confidence 555555555555554443 1222222222223334455555555554444332 112222 223334444444455555
Q ss_pred HHHHHHhcCCC---CCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHH
Q 015246 298 HLEYMNKIGFD---SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLL 365 (410)
Q Consensus 298 ~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 365 (410)
.++...+.... .+...+..+...+...|++++|...|+++...++..+.....++...|++++|++.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 199 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 55444432100 013445555555555566666666665555554444444444555555555555444
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.74 E-value=2.6e-15 Score=122.99 Aligned_cols=163 Identities=12% Similarity=0.127 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC--hhHHHHHHHHHh
Q 015246 35 NSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC--TATFNIMLNGLC 112 (410)
Q Consensus 35 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 112 (410)
......+...|++++|+..+++..+... .+...+..+..++...|++++|.+.++++...+..++ ...|..+...+.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 3344455555555555555555554321 1333455555555555555555555555554211111 112444555555
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHH
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLE 192 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 192 (410)
..|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544321 133444444555555555555555554444431 1223333333312222234444444
Q ss_pred HHHHHHHc
Q 015246 193 ILSAMKRK 200 (410)
Q Consensus 193 ~~~~~~~~ 200 (410)
.++++.+.
T Consensus 164 ~~~~a~~~ 171 (272)
T 3u4t_A 164 SFVKVLEL 171 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 44444443
No 49
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.73 E-value=3.4e-13 Score=122.41 Aligned_cols=393 Identities=10% Similarity=0.002 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---hhHHHHHH
Q 015246 13 DAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK---PDEANRVF 89 (410)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 89 (410)
.+.+..|++....+ +-|..+|..++..+.+.+.++.+..+|+.+... .|.....|...+..-.+.|+ ++.+.++|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 34445556655554 567777777777777777777778888777765 45566667777777677777 77778888
Q ss_pred HHHhcCC-CCCChhHHHHHHHHHhhcCch--------HHHHHHHHHHHh-CCC-CC-CHHHHHHHHHHHHh---------
Q 015246 90 QDMICGD-LTPCTATFNIMLNGLCKNRYT--------DNALRMFRGLQK-HGF-VP-ELVTYNILIKGLCK--------- 148 (410)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~--------- 148 (410)
++.+... .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 7777653 136777777766655444432 233456665443 344 33 34566665554332
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHH-------------hccchhHH-------------------------
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCF-------------RNRKYKLG------------------------- 190 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~a------------------------- 190 (410)
.++++.+..+|+.+.......-..+|......-. ...+++.|
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 2345666667766664211111122211111000 00111222
Q ss_pred ------------------------------------------HHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHH-H
Q 015246 191 ------------------------------------------LEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT-D 227 (410)
Q Consensus 191 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~ 227 (410)
..+|++++... +.....|...+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 22333333321 223334444445555666666775 7
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC------------chHHHHHHHHHH
Q 015246 228 YMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---------FEC------------DKYTHTILIDGL 286 (410)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~ 286 (410)
+++..... .+.+...|...+......|+++.|.++|+++.... ..| ....|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 77777664 33455556666667777777777877777776431 012 122456666666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHH
Q 015246 287 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKD-GKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSAS 362 (410)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 362 (410)
.+.|+.+.|..+|.+..+....+....|...+..-.+. ++.+.|..+|+...+. ++..|...+......|+.+.|.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 66777778888887777641112234444333333343 3477888887777655 5556666677677777888888
Q ss_pred HHHHHHHHcCCCC--cHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 363 KLLLSCLKSGVRI--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 363 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
.+|++++....++ ....|..++..-.+.|+.+.+.++.+++.+.-|+
T Consensus 525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888877653211 3356666666667778888888888877776654
No 50
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=7.2e-15 Score=118.90 Aligned_cols=200 Identities=13% Similarity=-0.011 Sum_probs=104.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015246 67 WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 146 (410)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (410)
..+..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445555555556666666666666555443 3345555555556666666666666666555442 22445555555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHH
Q 015246 147 CKAGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEA 225 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 225 (410)
...|++++|.+.++++...+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 56666666666665555421222 33444455555555555555555555555443 33344455555555555555555
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 226 TDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
...++.+.+. .+.+...+..+...+...|++++|...++++.+.
T Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5555555443 1223444444455555555555555555555443
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.72 E-value=2.5e-15 Score=121.59 Aligned_cols=198 Identities=10% Similarity=-0.035 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015246 171 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINL 250 (410)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 250 (410)
...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5667777888888888888888888888775 5567777888888888888888888888888763 2366777778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH
Q 015246 251 YCKEGKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH 329 (410)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 329 (410)
+...|++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887632233 45667777778888888888888888877753 3456677777777888888888
Q ss_pred HHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 330 AINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 330 A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
|...++++... +...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 88887776654 4556666777777778888888877777765
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.9e-15 Score=128.59 Aligned_cols=224 Identities=9% Similarity=0.002 Sum_probs=102.5
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR-LKEATDYMEQMVTDGVQLDIVSYNTLINLYC 252 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 252 (410)
|..+..++...|++++|+..++++++.+ +.+...|..+..++...|+ +++|+..++++++.... +...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 3344444444445555555555544443 3334444444444444453 55555555555443221 3444444444555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-cCChHHH-
Q 015246 253 KEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK-DGKIDHA- 330 (410)
Q Consensus 253 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A- 330 (410)
..|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHH
Confidence 5555555555555554443 1134444444555555555555555555554432 2234444444444444 3332444
Q ss_pred ----HHHHHhhccC---CchhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC--------C-
Q 015246 331 ----INVFESMEVK---DSFTYSSMVHNLCKAK--RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG--------C- 392 (410)
Q Consensus 331 ----~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~- 392 (410)
+..+++.... +...|..+..++...| ++++|++.+.++ +. -+.+...+..++.+|.+.| +
T Consensus 256 ~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 256 LEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 2444433322 3344444444444444 345555555554 22 1333444445555554432 1
Q ss_pred HHHHHHHHHHH
Q 015246 393 RREAKKIQSKI 403 (410)
Q Consensus 393 ~~~a~~~~~~~ 403 (410)
.++|.++++++
T Consensus 334 ~~~A~~~~~~l 344 (382)
T 2h6f_A 334 LNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35555555555
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=4.9e-15 Score=117.55 Aligned_cols=198 Identities=9% Similarity=-0.034 Sum_probs=116.9
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++++.... +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45556666667777777777777777766654 4455566666666777777777777777766642 224556666666
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh
Q 015246 250 LYCKE-GKLEAAYLLLDEMEKQGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKI 327 (410)
Q Consensus 250 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 327 (410)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 66666 77777777776666522122 24455566666666666666666666666542 22345555555555666666
Q ss_pred HHHHHHHHhhccC----CchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 328 DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 328 ~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
++|...++++... +...+..+...+...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666555554332 233444444445555555555555555543
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=5.1e-15 Score=125.95 Aligned_cols=229 Identities=9% Similarity=0.005 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-hhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK-PDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
..|..+...+...|++++|++.+++..+... .+..+|+.+..++...|+ +++|+..|++++..+ +.+...|+.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 4566666666677777777777777766532 245666666677777775 777777777766654 4556667777777
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh-ccchhH
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR-NRKYKL 189 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 189 (410)
+...|++++|+..|+++.+... -+...|..+..++...|++++|+..++++.+... .+...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchH
Confidence 7777777777777777666532 2566666666666667777777777776666432 245566666666666 444355
Q ss_pred H-----HHHHHHHHHcCCCCChhhHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-------
Q 015246 190 G-----LEILSAMKRKGYTFDGFGYCTVIAAFVKIG--RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG------- 255 (410)
Q Consensus 190 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 255 (410)
| +..+++.+... +.+...|..+..++...| ++++|.+.+..+ +. .+.+...+..+..+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 5 35555555553 334455555555555555 455666655555 22 2234445555555555542
Q ss_pred --CHHHHHHHHHHH
Q 015246 256 --KLEAAYLLLDEM 267 (410)
Q Consensus 256 --~~~~a~~~~~~~ 267 (410)
..++|..+++++
T Consensus 331 ~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 331 EDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 135566666655
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=1.1e-14 Score=115.57 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 111 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (410)
..+..+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|.+.++++.... +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444444444444444444444444432 1133344444444444444444444444443332 22333344444444
Q ss_pred hhc-CchHHHHHHHHHHHh
Q 015246 112 CKN-RYTDNALRMFRGLQK 129 (410)
Q Consensus 112 ~~~-~~~~~a~~~~~~~~~ 129 (410)
... |++++|...++++.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHc
Confidence 444 444444444444433
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=1e-15 Score=123.11 Aligned_cols=210 Identities=14% Similarity=0.093 Sum_probs=148.6
Q ss_pred CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 015246 169 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLI 248 (410)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 248 (410)
.....+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 345667777788888899999999999888765 5567788888888889999999999999888763 33677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChH
Q 015246 249 NLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID 328 (410)
Q Consensus 249 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 328 (410)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 88888999999999998888764 3366778888888888899999999998888753 446777888888888888888
Q ss_pred HHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHH
Q 015246 329 HAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAV 383 (410)
Q Consensus 329 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 383 (410)
+|...++++... +..++..++.++...|++++|...++++++.. +.+...+..+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 888888877654 56677888888888888888888888888763 3344444333
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=1.5e-15 Score=122.22 Aligned_cols=201 Identities=13% Similarity=0.066 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 135 ELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIA 214 (410)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 214 (410)
....|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556666777777778888888777777643 2356677777777777788888888887777664 445666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhH
Q 015246 215 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKG 294 (410)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (410)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 7777788888888887777653 3356667777777777788888888877777653 3356667777777777788888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 295 ARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 295 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
|...++++.+.. +.+..++..+..++...|++++|...++++...
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888877777652 345667777777777788888887777776554
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.70 E-value=1.5e-15 Score=132.14 Aligned_cols=151 Identities=13% Similarity=-0.030 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-chH
Q 015246 208 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LD----IVSYNTLINLYCKEGKLEAAYLLLDEMEKQG----FEC-DKY 277 (410)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~ 277 (410)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.. ..+ ...
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 4555666666667777776666666543110 11 2255666666777777777777776664321 000 134
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccC---------Cch
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKI----GFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSF 343 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~ 343 (410)
++..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|...+++.... ...
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 348 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELT 348 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhH
Confidence 5566667777777777777777766542 1011 1345566666777777777777777665433 233
Q ss_pred hHHHHHHHHHhcCCh
Q 015246 344 TYSSMVHNLCKAKRL 358 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~ 358 (410)
++..+...+...|+.
T Consensus 349 ~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 349 ARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHh
Confidence 455556666666655
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.69 E-value=1.8e-15 Score=131.80 Aligned_cols=269 Identities=13% Similarity=0.060 Sum_probs=144.3
Q ss_pred hHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCcHH
Q 015246 102 ATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPEL----VTYNILIKGLCKAGRLRTARWILKELGDS----G-HAPNAI 172 (410)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 172 (410)
..+..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|...+++.... + .+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34445666777788888888888887765322 32 35667777777788888888877776542 1 112345
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcC-----CCCChhhHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKG-----YTFDGFGYCTVIAAFVKIGR-----------------LKEATDYME 230 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 230 (410)
.+..+..++...|++++|...+++..+.. .+....++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 56666667777777777777777765431 01123355566666666666 666666666
Q ss_pred HHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc----hHHHHHHHHHHHhcCChhHHHHHHH
Q 015246 231 QMVTD----GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTILIDGLCKAGNIKGARLHLE 300 (410)
Q Consensus 231 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (410)
+..+. +. ......+..+...+...|++++|...+++..+.... ++ ...+..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 55432 00 111234455555566666666666666555432100 01 1144455555555555555555555
Q ss_pred HHHhcCCC-----CCHHHHHHHHHHHHccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChhhHHHHHH
Q 015246 301 YMNKIGFD-----SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLL 366 (410)
Q Consensus 301 ~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~ 366 (410)
+..+.... ....++..+...+...|++++|...+++.... ...++..+..++...|++++|...++
T Consensus 288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 54432100 01233444455555555555555555544332 12234444445555555555555555
Q ss_pred HHHHc
Q 015246 367 SCLKS 371 (410)
Q Consensus 367 ~~~~~ 371 (410)
++++.
T Consensus 368 ~al~~ 372 (411)
T 4a1s_A 368 QHLQL 372 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55433
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.68 E-value=5e-15 Score=128.75 Aligned_cols=298 Identities=11% Similarity=0.004 Sum_probs=208.5
Q ss_pred CCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC
Q 015246 98 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDS----GHAP 169 (410)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 169 (410)
.+....+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++.... +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 455666777888899999999999999998876322 3 356778888999999999999999886542 2112
Q ss_pred -cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHHHcCC--------------------HH
Q 015246 170 -NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-TFD----GFGYCTVIAAFVKIGR--------------------LK 223 (410)
Q Consensus 170 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~ 223 (410)
...++..+..++...|++++|...+++..+... .++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 255677788888999999999999988775410 011 3367777888888888 88
Q ss_pred HHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCc----hHHHHHHHHHHHhcCChh
Q 015246 224 EATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGF-ECD----KYTHTILIDGLCKAGNIK 293 (410)
Q Consensus 224 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~ 293 (410)
+|...+++.... +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888877653 111 1234677777888888999999888888765311 111 226777788888888888
Q ss_pred HHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChh
Q 015246 294 GARLHLEYMNKI----GFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLP 359 (410)
Q Consensus 294 ~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~ 359 (410)
+|...+++..+. +..+ ...++..+...+...|++++|...+++.... ...++..+..++...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 888888887643 1111 1456677788888888888888888876543 1446777788888888888
Q ss_pred hHHHHHHHHHHcCCCCc-----HhhHHHHHHHHhhcCCHHHH
Q 015246 360 SASKLLLSCLKSGVRIL-----KSAQKAVVDGLRHSGCRREA 396 (410)
Q Consensus 360 ~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a 396 (410)
+|...++++++...... ..++..+...+...|+...+
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 88888888876532122 12444555555555555443
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=4.6e-15 Score=129.30 Aligned_cols=274 Identities=14% Similarity=0.004 Sum_probs=202.6
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh----hHHHHHHHHHhhcCchHHHHHHHHHHHhC----C-CCCCH
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT----ATFNIMLNGLCKNRYTDNALRMFRGLQKH----G-FVPEL 136 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~ 136 (410)
...+..+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|++++|...+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3445567778888999999999999988764 3333 46788888899999999999999887653 1 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCcHHHHHHHHHHHHhccc-----------------hhHHHHHH
Q 015246 137 VTYNILIKGLCKAGRLRTARWILKELGDS----G-HAPNAITYTTIMKCCFRNRK-----------------YKLGLEIL 194 (410)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 194 (410)
..+..+...|...|++++|...+++.... + .+....++..+..++...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 56778888899999999999999887653 1 11234567778888889999 89998888
Q ss_pred HHHHHc----CC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHH
Q 015246 195 SAMKRK----GY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LD----IVSYNTLINLYCKEGKLEAAYLLL 264 (410)
Q Consensus 195 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 264 (410)
++..+. +. +.....+..+...+...|++++|...+++..+.... ++ ...+..+..++...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 887643 11 112346777888889999999999999988875211 11 126777888899999999999999
Q ss_pred HHHHhCCCC-C----chHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHccCChHHHHHHH
Q 015246 265 DEMEKQGFE-C----DKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GF-DSNLEAYNCIVDRLGKDGKIDHAINVF 334 (410)
Q Consensus 265 ~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (410)
++....... . ...++..+...+...|++++|...+++..+. +. .....++..+...|...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 988765211 1 1456777888889999999999999987653 11 111346777888899999999999999
Q ss_pred HhhccC
Q 015246 335 ESMEVK 340 (410)
Q Consensus 335 ~~~~~~ 340 (410)
++....
T Consensus 367 ~~al~~ 372 (411)
T 4a1s_A 367 EQHLQL 372 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877766
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.67 E-value=4.5e-15 Score=125.49 Aligned_cols=272 Identities=15% Similarity=0.055 Sum_probs=142.7
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CcHHHH
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE----LVTYNILIKGLCKAGRLRTARWILKELGDS----GHA-PNAITY 174 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 174 (410)
+......+...|++++|...++++.+.... + ...+..+...+...|++++|...+++.... +.. .....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334455555666666666666666554211 2 234555555666666666666666554331 101 113334
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015246 175 TTIMKCCFRNRKYKLGLEILSAMKRKGY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 253 (410)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (410)
..+...+...|++++|...+++..+... .++.. ....++..+...+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHH
Confidence 4444455555555555555555443210 00100 001233344444444
Q ss_pred cCC--------------------HHHHHHHHHHHHhC----CC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc---
Q 015246 254 EGK--------------------LEAAYLLLDEMEKQ----GF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI--- 305 (410)
Q Consensus 254 ~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 305 (410)
.|+ +++|...+++.... +. ......+..+...+...|++++|...+++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 444 45555444443221 10 011234555555666666666666666655432
Q ss_pred -CCC-CCHHHHHHHHHHHHccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc---
Q 015246 306 -GFD-SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS--- 371 (410)
Q Consensus 306 -~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--- 371 (410)
+.. .....+..+...+...|++++|...+++.... ...++..+...+...|++++|...++++++.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 000 01225556666667777777777776665433 1345666777777888888888888777643
Q ss_pred -CCC-CcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHcc
Q 015246 372 -GVR-ILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAK 407 (410)
Q Consensus 372 -~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 407 (410)
+-+ ....++..+...|...|++++|...+++..+..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 111 113466677778888888888888888876643
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.67 E-value=6.1e-14 Score=120.87 Aligned_cols=229 Identities=9% Similarity=-0.058 Sum_probs=137.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC----CCCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHcC--C----CCChhhHH
Q 015246 142 LIKGLCKAGRLRTARWILKELGDS----GHAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--Y----TFDGFGYC 210 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 210 (410)
....+...|++++|...+++.... +..+ ...++..+..++...|+++.|...+.+..+.. . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455666777788887777777553 1111 23556667777777777777777777766531 0 11123566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCchHHHH
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTDGVQ-L----DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GF-ECDKYTHT 280 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 280 (410)
.+..+|...|++++|...+++..+.... + ...++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777777778888887777776653111 1 1135666777777777777777777776551 22 22345566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHccCC---hHHHHHHHHhhccC--CchhHHHHHHH
Q 015246 281 ILIDGLCKAGNIKGARLHLEYMNKI----GFDSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK--DSFTYSSMVHN 351 (410)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~--~~~~~~~l~~~ 351 (410)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|..++++.... ....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 6777777777777777777766542 111112223445556666666 56666666655332 23345556666
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 015246 352 LCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~ 370 (410)
|...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666553
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=1.8e-13 Score=113.98 Aligned_cols=231 Identities=6% Similarity=-0.061 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHhc----CCH----HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh-------ccch-------hHHHHH
Q 015246 136 LVTYNILIKGLCKA----GRL----RTARWILKELGDSGHAPNAITYTTIMKCCFR-------NRKY-------KLGLEI 193 (410)
Q Consensus 136 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~ 193 (410)
...|...+..-.+. ++. ++|..+|++..... +.+...|..++..+.. .|++ ++|..+
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~ 86 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 86 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHH
Confidence 34555555554433 232 56777777776642 2356666666666543 3664 677777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 015246 194 LSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-IV-SYNTLINLYCKEGKLEAAYLLLDEMEKQG 271 (410)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 271 (410)
|++..+.-.+.+...|..++..+...|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.+
T Consensus 87 ~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 87 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777776311344556777777777777777777777777764 332 33 67777777777777777777777777653
Q ss_pred CCCchHHHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-------Cch
Q 015246 272 FECDKYTHTILIDGLC-KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-------DSF 343 (410)
Q Consensus 272 ~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~ 343 (410)
+++...|...+.... ..|+++.|..+|++..+.. +.+...|..++..+.+.|++++|..+|++.... ...
T Consensus 165 -p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~ 242 (308)
T 2ond_A 165 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242 (308)
T ss_dssp -TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHH
T ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 223333433332222 2577777777777776642 335666677777777777777777777766552 223
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.|..++......|+.++|..+++++++.
T Consensus 243 l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 243 IWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666666666777777777777777654
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.65 E-value=2.2e-14 Score=121.20 Aligned_cols=274 Identities=12% Similarity=0.003 Sum_probs=169.9
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC----hhHHHHHHHHHhhcCchHHHHHHHHHHHhC----CCC-CCH
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC----TATFNIMLNGLCKNRYTDNALRMFRGLQKH----GFV-PEL 136 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~ 136 (410)
...+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+++.... +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 3455666788899999999999999998864 333 367888999999999999999999987543 111 135
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCc----HHHHHHHHHHHHhccc--------------------hhHHH
Q 015246 137 VTYNILIKGLCKAGRLRTARWILKELGDSGH-APN----AITYTTIMKCCFRNRK--------------------YKLGL 191 (410)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~ 191 (410)
..+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5778889999999999999999998765311 112 3366677777888888 66666
Q ss_pred HHHHHHHHc----CC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 015246 192 EILSAMKRK----GY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDE 266 (410)
Q Consensus 192 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 266 (410)
..+++.... +. +.....+..+...+...|++++|...+++..+....
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------------------- 215 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE---------------------------- 215 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh----------------------------
Confidence 666655432 10 011223334444444445555555554444432100
Q ss_pred HHhCCC-CCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 267 MEKQGF-ECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 267 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
.+. .....++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++....
T Consensus 216 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 216 ---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp ---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 000 001124445555555566666666665554432 0000 1344555666666667777776666655433
Q ss_pred ---------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 341 ---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 341 ---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
...++..+...+...|++++|...++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1335666777778888888888888877754
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=2.2e-14 Score=109.93 Aligned_cols=164 Identities=15% Similarity=0.025 Sum_probs=94.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 015246 205 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 284 (410)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (410)
+...|..+..++...|++++|+..|++..+..+ -+...+..+..+|...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 445566666666666666666666666665532 245556666666666666666666666665543 223445555555
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhH
Q 015246 285 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA 361 (410)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 361 (410)
.+...++++.+...+.+..+.. +.+...+..+..++...|++++|+..|++.... ++.+|..++.++...|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 5666666666666666665542 334555555556666666666666666555433 444555555556666666666
Q ss_pred HHHHHHHHHc
Q 015246 362 SKLLLSCLKS 371 (410)
Q Consensus 362 ~~~~~~~~~~ 371 (410)
++.|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666665543
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.65 E-value=6.7e-14 Score=120.63 Aligned_cols=227 Identities=12% Similarity=-0.018 Sum_probs=176.0
Q ss_pred HHHHHHhccchhHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CChhhHH
Q 015246 177 IMKCCFRNRKYKLGLEILSAMKRK----GYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ------LDIVSYN 245 (410)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 245 (410)
....+...|++++|...+++..+. +.++ ...++..+..+|...|++++|...+++..+.... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778899999999999999864 1111 3457888899999999999999999998764111 1235678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-Cc----hHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CC-CCCHHHHH
Q 015246 246 TLINLYCKEGKLEAAYLLLDEMEKQGFE-CD----KYTHTILIDGLCKAGNIKGARLHLEYMNKI----GF-DSNLEAYN 315 (410)
Q Consensus 246 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 315 (410)
.+..+|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988653111 11 247888999999999999999999998762 23 33467788
Q ss_pred HHHHHHHccCChHHHHHHHHhhccC-----Cc---hhHHHHHHHHHhcCC---hhhHHHHHHHHHHcCCCC-cHhhHHHH
Q 015246 316 CIVDRLGKDGKIDHAINVFESMEVK-----DS---FTYSSMVHNLCKAKR---LPSASKLLLSCLKSGVRI-LKSAQKAV 383 (410)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 383 (410)
.+...+.+.|++++|...+++.... ++ ..+..+...+...|+ .++|+.++++. +..| ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999987654 22 235667778888888 77777777776 3333 35577788
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHc
Q 015246 384 VDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 384 ~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+..|...|++++|...+++..+.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 89999999999999999998664
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=1.7e-11 Score=111.39 Aligned_cols=380 Identities=10% Similarity=-0.002 Sum_probs=252.9
Q ss_pred hhhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHcC-CCCChHhHHHHHHHHH
Q 015246 2 LIDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL---LSCSLDLLDEMLEMG-IPPDVWSYNSLMHCLF 77 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 77 (410)
+++.+.+.+.++.+..+|+++...- +.....|...+..-.+.++ ++.+..+|++..... .+|++..|...+....
T Consensus 72 yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~ 150 (679)
T 4e6h_A 72 LLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVR 150 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 4566667788999999999998763 5677788888888888888 889999999888753 1367777877776665
Q ss_pred hcCCh--------hHHHHHHHHHhc-CCC-CC-ChhHHHHHHHHHh---------hcCchHHHHHHHHHHHhCCCCCCHH
Q 015246 78 QLGKP--------DEANRVFQDMIC-GDL-TP-CTATFNIMLNGLC---------KNRYTDNALRMFRGLQKHGFVPELV 137 (410)
Q Consensus 78 ~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~ 137 (410)
+.++. +...++|+..+. .|. .+ +...|...+.... ..++.+.+..+|+.+.......-..
T Consensus 151 ~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~ 230 (679)
T 4e6h_A 151 KKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLES 230 (679)
T ss_dssp HHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHH
T ss_pred HhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHH
Confidence 55543 334467777554 244 33 4567777765543 2344666777777776431111112
Q ss_pred HHHHH-------------------------------------------------------------------------HH
Q 015246 138 TYNIL-------------------------------------------------------------------------IK 144 (410)
Q Consensus 138 ~~~~l-------------------------------------------------------------------------~~ 144 (410)
+|... +.
T Consensus 231 ~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~ 310 (679)
T 4e6h_A 231 MWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIR 310 (679)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHH
Confidence 22111 10
Q ss_pred HHHhcC-------CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH-HHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 145 GLCKAG-------RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL-EILSAMKRKGYTFDGFGYCTVIAAF 216 (410)
Q Consensus 145 ~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (410)
.--..+ ..+.+..+|++.... .+-....|...+..+...|+.++|. +++++..... |.+...+...+...
T Consensus 311 fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~e 388 (679)
T 4e6h_A 311 WESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQY 388 (679)
T ss_dssp HHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 000000 011122334433332 1224455556666667778888996 9999998753 55666677788888
Q ss_pred HHcCCHHHHHHHHHHHHHcCC---------CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 015246 217 VKIGRLKEATDYMEQMVTDGV---------QLD------------IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD 275 (410)
Q Consensus 217 ~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 275 (410)
.+.|+++.|..+|+.+..... .|+ ..+|...+....+.|+.+.|..+|.++.+....+.
T Consensus 389 e~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~ 468 (679)
T 4e6h_A 389 ELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT 468 (679)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC
Confidence 899999999999999886410 132 23677778888888999999999999987611223
Q ss_pred hHHHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCc------hhHHHH
Q 015246 276 KYTHTILIDGLCKA-GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDS------FTYSSM 348 (410)
Q Consensus 276 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l 348 (410)
...|...+..-.+. ++.+.|..+|+...+. .+.+...+..++......|+.+.|+.+|++.....+ ..|...
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~ 547 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV 547 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444444333444 4589999999999886 455677778888888889999999999999887633 568888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 015246 349 VHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 387 (410)
Q Consensus 349 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (410)
+..-...|+.+.+..+.+++.+. .|+......+..-|
T Consensus 548 ~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 548 IFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 88888999999999999999977 34433333344333
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=1.3e-12 Score=108.87 Aligned_cols=84 Identities=7% Similarity=-0.088 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--chHHHHHHHHHHHhcCChhHHH
Q 015246 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG-FEC--DKYTHTILIDGLCKAGNIKGAR 296 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~ 296 (410)
|++++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++......|+.+.|.
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444331 1133344444444444444444444444444431 122 1223333344444444444444
Q ss_pred HHHHHHHh
Q 015246 297 LHLEYMNK 304 (410)
Q Consensus 297 ~~~~~~~~ 304 (410)
.+++++.+
T Consensus 262 ~~~~~a~~ 269 (308)
T 2ond_A 262 KVEKRRFT 269 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=1.7e-14 Score=120.63 Aligned_cols=241 Identities=15% Similarity=0.087 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc------C-
Q 015246 136 LVTYNILIKGLCKAGRLRTARWILKELGDS-------GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK------G- 201 (410)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 201 (410)
..++..+...+...|++++|...++++.+. ..+.....+..+..++...|++++|...++++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345555566666666666666666665541 11223344555555555566666666655555433 1
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015246 202 YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD------GV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 274 (410)
Q Consensus 202 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 274 (410)
.+.....+..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|...++++.+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--- 183 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY--- 183 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH---
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---
Confidence 1112334444555555555555555555554432 00 1122233444444444455555554444443320
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccC-----------
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------- 340 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------- 340 (410)
.+. +..| ...++..+..++...|++++|...++++...
T Consensus 184 ----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 184 ----------------------------QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp ----------------------------HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ----------------------------HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 000 1011 1233444444555555555555555444321
Q ss_pred -------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 341 -------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 341 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
....+......+...+.+.++...++...... +....++..++.+|.+.|++++|.+.+++..+..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 11122223334455667777777777776542 44567788888889999999999999988876654
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=4.8e-14 Score=124.52 Aligned_cols=215 Identities=10% Similarity=-0.045 Sum_probs=169.9
Q ss_pred ChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh-hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHH
Q 015246 46 LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP-DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMF 124 (410)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 124 (410)
.+++++..++..... .+.+...+..+..++...|++ ++|.+.|++..+.. +.+...|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 466777777776654 234677788888888888888 88888888887765 556788888888888888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc--------cch
Q 015246 125 RGLQKHGFVPELVTYNILIKGLCKA---------GRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN--------RKY 187 (410)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 187 (410)
++..+.. |+...+..+...+... |++++|...+++..+... .+...|..+..++... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchH
Confidence 8888763 5567888888888888 888889888888877542 3577788888888888 889
Q ss_pred hHHHHHHHHHHHcCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYT---FDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLL 264 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 264 (410)
++|+..|++..+.. + .+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|...+
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888874 4 577788888888889999999999998888763 235667788888888888888888766
Q ss_pred HHH
Q 015246 265 DEM 267 (410)
Q Consensus 265 ~~~ 267 (410)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 554
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.6e-13 Score=121.22 Aligned_cols=212 Identities=9% Similarity=-0.050 Sum_probs=151.4
Q ss_pred hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 015246 82 PDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT-DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILK 160 (410)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 160 (410)
++++.+.++...... +.+...+..+...+...|++ ++|...|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666666665543 45677788888888888888 88888888887763 2357778888888888888888888888
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHhc---------cchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc--------CCHH
Q 015246 161 ELGDSGHAPNAITYTTIMKCCFRN---------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI--------GRLK 223 (410)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 223 (410)
+..+.. |+...+..+..++... |++++|+..+++..+.. +.+...+..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 887753 5567777777788777 88888888888877765 55666777777777777 7777
Q ss_pred HHHHHHHHHHHcCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHH
Q 015246 224 EATDYMEQMVTDGVQ--LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHL 299 (410)
Q Consensus 224 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (410)
+|...|++..+.... .+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|...+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777765221 356667777777777777777777777776653 224555666666666667666666544
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.59 E-value=8.7e-13 Score=100.96 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEME 268 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (410)
+..+..+|.+.|++++|...|++..
T Consensus 144 ~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 144 YQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.57 E-value=1.9e-12 Score=111.33 Aligned_cols=226 Identities=12% Similarity=-0.012 Sum_probs=124.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCC-CC----cHHHHHHHHHHHHhccchhHHHHHHHHHHHcC--CC----CChhhHHH
Q 015246 143 IKGLCKAGRLRTARWILKELGDSGH-AP----NAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--YT----FDGFGYCT 211 (410)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~~ 211 (410)
...+...|++++|...+++...... .+ ...++..+..++...|+++.|...+.+..+.. .. ....++..
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 4445566777777777766654210 01 23455566666677777777777766665431 00 01334556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCchHHHHH
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTD----GVQ-LDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-----QGFECDKYTHTI 281 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 281 (410)
+..+|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+++..+ .. +....++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence 666677777777777777666542 111 1123455566667777777777777766654 22 222455666
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHccCC---hHHHHHHHHhhccC--CchhHHHHHHHH
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNKIGF----DSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK--DSFTYSSMVHNL 352 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~--~~~~~~~l~~~~ 352 (410)
+...+...|++++|...+++..+... +.....+..+...+...++ +.+|...+++.... ....+..++..|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 66677777777777777776654311 1112233444445555555 55555555543222 223444555556
Q ss_pred HhcCChhhHHHHHHHHH
Q 015246 353 CKAKRLPSASKLLLSCL 369 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~ 369 (410)
...|++++|...|+++.
T Consensus 347 ~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 66666666666665554
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.57 E-value=6.2e-14 Score=117.12 Aligned_cols=173 Identities=14% Similarity=0.080 Sum_probs=137.2
Q ss_pred CCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----
Q 015246 98 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH-------GFVPELVTYNILIKGLCKAGRLRTARWILKELGDS----- 165 (410)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 165 (410)
+.+..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...+++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 344677888999999999999999999998873 23335667888999999999999999999998763
Q ss_pred -C-CCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 015246 166 -G-HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK------GY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD- 235 (410)
Q Consensus 166 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 235 (410)
+ .+.....+..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|...+++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2 2234667888899999999999999999998865 21 223456778889999999999999999998774
Q ss_pred -----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 236 -----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 236 -----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
+..| ...++..+..++...|++++|...++++.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1122 3456777788888888888888888888753
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.56 E-value=1e-11 Score=106.62 Aligned_cols=297 Identities=13% Similarity=0.029 Sum_probs=192.5
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCcH----HHH
Q 015246 104 FNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELV----TYNILIKGLCKAGRLRTARWILKELGDSGH-APNA----ITY 174 (410)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~ 174 (410)
.......+...|++++|...+++........+.. .++.+...+...|++++|...+++...... .++. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556677899999999999887754322222 456667778888999999998888765211 1122 234
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHc----CCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----Chhh
Q 015246 175 TTIMKCCFRNRKYKLGLEILSAMKRK----GYT--F-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL----DIVS 243 (410)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~ 243 (410)
..+...+...|++++|...+++..+. +.+ | ....+..+...+...|++++|...+++........ ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 55667788889999999888887653 211 2 23345567778888899999999998887653221 1245
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--hHHHH----HHHHHHHhcCChhHHHHHHHHHHhcCCCCC---HHHH
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--KYTHT----ILIDGLCKAGNIKGARLHLEYMNKIGFDSN---LEAY 314 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 314 (410)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 66677788888999999988888765321111 11111 223446688889888888888765432111 2245
Q ss_pred HHHHHHHHccCChHHHHHHHHhhccC---------CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHH
Q 015246 315 NCIVDRLGKDGKIDHAINVFESMEVK---------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVD 385 (410)
Q Consensus 315 ~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 385 (410)
..+...+...|++++|...+++.... ....+..+..++...|+.++|...+++.+... ++ . ....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-~~-~----g~~~ 330 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA-NR-T----GFIS 330 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH-H----CCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-cc-c----cHHH
Confidence 66677888888888888888876543 11255566777788888888888888887652 11 1 1222
Q ss_pred HHhhcCCHHHHHHHHHHHHHccC
Q 015246 386 GLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 386 ~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
.+...| +....+++.+....+
T Consensus 331 ~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 331 HFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp HHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHcc--HHHHHHHHHHHhCCC
Confidence 334444 566666666665544
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.54 E-value=1.8e-12 Score=111.47 Aligned_cols=228 Identities=11% Similarity=-0.008 Sum_probs=171.6
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCC-CC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----C-CChhhH
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGY-TF----DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-----Q-LDIVSY 244 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 244 (410)
.....+...|++++|+..+++..+... .+ ...++..+..+|...|+++.|...+++..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345567889999999999999886521 12 244677888999999999999999998876411 1 124567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CchHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCHHHHH
Q 015246 245 NTLINLYCKEGKLEAAYLLLDEMEKQ----GFE-CDKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDSNLEAYN 315 (410)
Q Consensus 245 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~ 315 (410)
+.+..+|...|++++|...+.+..+. +.. ....++..+...+...|++++|...+++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 78889999999999999999988653 111 12346778899999999999999999998761 2233467788
Q ss_pred HHHHHHHccCChHHHHHHHHhhccC-----Cc---hhHHHHHHHHHhcCC---hhhHHHHHHHHHHcCCCC-cHhhHHHH
Q 015246 316 CIVDRLGKDGKIDHAINVFESMEVK-----DS---FTYSSMVHNLCKAKR---LPSASKLLLSCLKSGVRI-LKSAQKAV 383 (410)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~---~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~-~~~~~~~l 383 (410)
.+..++.+.|++++|...+++.... ++ ..+..+...+...++ ..+|+..+++. +..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8999999999999999999987653 21 234455555666777 77777777763 3233 34566788
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHc
Q 015246 384 VDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 384 ~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+..|...|++++|...+++..+.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999999999988654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=2.8e-11 Score=103.88 Aligned_cols=201 Identities=13% Similarity=-0.009 Sum_probs=107.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--C-cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCC---C-Chhh
Q 015246 140 NILIKGLCKAGRLRTARWILKELGDS----GHA--P-NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT---F-DGFG 208 (410)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~-~~~~ 208 (410)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 34445555556666665555554331 111 1 2233444555566666666666666665543211 0 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---chHHH
Q 015246 209 YCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI-VSYN-----TLINLYCKEGKLEAAYLLLDEMEKQGFEC---DKYTH 279 (410)
Q Consensus 209 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 279 (410)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 455566666677777777777666543111111 1111 12233556777777777777665432111 12234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc----CCCCCH-HHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 280 TILIDGLCKAGNIKGARLHLEYMNKI----GFDSNL-EAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
..+...+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55666777778888877777766532 211122 25555667777888888888877766543
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=1.1e-12 Score=100.52 Aligned_cols=163 Identities=15% Similarity=0.037 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 244 YNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 244 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3334444445555555555555444332 1234444445555555555555555555554431 2334445555555555
Q ss_pred cCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHH
Q 015246 324 DGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 400 (410)
Q Consensus 324 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 400 (410)
.|++++|...++++... +...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555544332 34455555566666666666666666666543 344556666666666666666666666
Q ss_pred HHHHHccCC
Q 015246 401 SKIRMAKIS 409 (410)
Q Consensus 401 ~~~~~~~~~ 409 (410)
+++.+..++
T Consensus 168 ~~~~~~~~~ 176 (186)
T 3as5_A 168 KKANELDEG 176 (186)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHcCCC
Confidence 666554443
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=1.8e-12 Score=102.98 Aligned_cols=198 Identities=11% Similarity=-0.093 Sum_probs=152.6
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHH
Q 015246 203 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTIL 282 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 282 (410)
+.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 345677888889999999999999999999987554677777778999999999999999999999875 3366788889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHccCChHHHHHHHHhhccCCch-----hHHHHHH
Q 015246 283 IDGLCKAGNIKGARLHLEYMNKIGFDSNL-------EAYNCIVDRLGKDGKIDHAINVFESMEVKDSF-----TYSSMVH 350 (410)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~l~~ 350 (410)
...+...|++++|...+++..+.. +.+. ..+..+...+...|++++|...|++....++. .+..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999998853 3344 45777888888999999999999998877444 5566666
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 351 NLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
++...| ...++++...+ +.+...+... .....+.+++|...+++..+..|++
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 665443 44556665553 3334444333 2345677899999999999988864
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=1.1e-12 Score=120.57 Aligned_cols=163 Identities=13% Similarity=0.072 Sum_probs=109.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 015246 205 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 284 (410)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (410)
+..+++.+..++.+.|++++|++.|++.++... -+...+..+..+|.+.|++++|...|++..+.. +-+...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455677777777777777777777777776532 245667777777777777777777777776653 224566777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhH
Q 015246 285 GLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSA 361 (410)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 361 (410)
++...|++++|+..|++..+.. +.+...+..+..+|...|++++|+..|++..+. +...+..++.++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 7777777777777777776642 334566666777777777777777777665543 455666666677777777777
Q ss_pred HHHHHHHHH
Q 015246 362 SKLLLSCLK 370 (410)
Q Consensus 362 ~~~~~~~~~ 370 (410)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766654
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.48 E-value=2.5e-11 Score=96.36 Aligned_cols=195 Identities=14% Similarity=0.058 Sum_probs=149.8
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHH
Q 015246 29 PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIML 108 (410)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (410)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|.+.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888889999999999999999999887654677777778999999999999999999998775 55678888999
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc---HHHHHHHH
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPEL-------VTYNILIKGLCKAGRLRTARWILKELGDSGHAPN---AITYTTIM 178 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 178 (410)
.++...|++++|...+++..+... .+. ..|..+...+...|++++|...|++..+. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 999999999999999999988632 244 45777888889999999999999999875 344 55667777
Q ss_pred HHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 015246 179 KCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
.++...|+ ..++.+...+ ..+...+.... ....+.+++|...+++..+.
T Consensus 161 ~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 77765543 3445555443 33333443332 33456789999999999886
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=1.4e-11 Score=94.23 Aligned_cols=161 Identities=9% Similarity=0.022 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK 148 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 148 (410)
+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3344444444455555555554444332 2334444444444445555555555554444431 1233444444444444
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDY 228 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 228 (410)
.|++++|.+.++++.... +.+...+..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555444444444321 1233344444444444444444444444444432 22333444444444444444444444
Q ss_pred HHHHH
Q 015246 229 MEQMV 233 (410)
Q Consensus 229 ~~~~~ 233 (410)
++...
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 84
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.45 E-value=5.2e-11 Score=96.22 Aligned_cols=239 Identities=9% Similarity=0.020 Sum_probs=153.9
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchh
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK 188 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (410)
+-..-.|.+..++.-. .+............+.++|...|++... ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 4444578888877733 3222122223334455788888877642 12334444444444333 222
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 189 LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGV-QLDIVSYNTLINLYCKEGKLEAAYLLLDEM 267 (410)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 267 (410)
++..+++....+ +++..++..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667777776655 45556666777888888889998888888876543 235667777888888888888888888888
Q ss_pred HhCCCCC-----chHHHHHHHHHH--HhcC--ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 268 EKQGFEC-----DKYTHTILIDGL--CKAG--NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 268 ~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
.+. .| +..+...++.++ ...| ++.+|..+|+++.+. .|+......++.++.+.|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 775 45 355566666553 3334 788888888888764 4543333444447888888888888887654
Q ss_pred c------------C-CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 339 V------------K-DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 339 ~------------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
. + ++.+...++......|+ +|.+++.++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3 2 66666666666666676 778888888765
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.44 E-value=9.1e-12 Score=114.48 Aligned_cols=168 Identities=14% Similarity=0.029 Sum_probs=144.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHH
Q 015246 28 SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIM 107 (410)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (410)
+.+..+|+.+...+.+.|++++|++.|++..+... -+..++..+..++.+.|++++|.+.|++.++.+ +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 33567899999999999999999999999988643 367889999999999999999999999988875 5668899999
Q ss_pred HHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccch
Q 015246 108 LNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (410)
..++...|++++|++.|++..+... -+...|+.+..+|...|++++|++.|++..+... -+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccH
Confidence 9999999999999999999988643 3678899999999999999999999999888542 3577888899999999999
Q ss_pred hHHHHHHHHHHH
Q 015246 188 KLGLEILSAMKR 199 (410)
Q Consensus 188 ~~a~~~~~~~~~ 199 (410)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988887764
No 86
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.44 E-value=7.3e-10 Score=97.81 Aligned_cols=363 Identities=7% Similarity=-0.061 Sum_probs=219.0
Q ss_pred hcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-hhHH
Q 015246 8 QFV-SFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK-PDEA 85 (410)
Q Consensus 8 ~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 85 (410)
+.| +++.|..+|+.+... -|. |+++.+..+|++.... .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 378888888888765 243 7788899999888874 3688888888777766653 4566
Q ss_pred HHHHHHHhcC-CC-CCChhHHHHHHHHHh----hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-----------
Q 015246 86 NRVFQDMICG-DL-TPCTATFNIMLNGLC----KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCK----------- 148 (410)
Q Consensus 86 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------- 148 (410)
..+|+..+.. |. +.+...|...+..+. ..++.+.+..+|++........-...|......-..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 7777776653 32 346778887777654 346778888888888874221111222222211111
Q ss_pred --cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc-------chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 149 --AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR-------KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 149 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
.+.+..|..+++.+...-...+...|...+..-...+ ..+.+..+|+++.... +.+...|...+..+...
T Consensus 148 ~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 148 DTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 1123334444444332100013345555444422211 1344667888888764 55677788888888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------C---CCchHHHHHHHHHHH
Q 015246 220 GRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---------F---ECDKYTHTILIDGLC 287 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~ 287 (410)
|+.+.|..++++.... +.+...+.. |....+.++. ++.+.+.- . ......|...+....
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 9999999999999987 333333322 2222111222 22222110 0 111244566666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHH
Q 015246 288 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASK 363 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 363 (410)
+.++.+.|..+|++. +. ...+..+|...+..-...+ +.+.|..+|+..... ++..|...+......|+.+.|..
T Consensus 298 r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 778899999999988 32 1234455544333333333 699999999987664 45556667777788899999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 364 LLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
+|+++. .....|...+..-...|+.+.+.+++++...
T Consensus 376 l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 376 LFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999972 2567777777777888999999998888764
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.42 E-value=2.6e-10 Score=92.20 Aligned_cols=179 Identities=11% Similarity=0.012 Sum_probs=91.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCcHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 015246 120 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH-APNAITYTTIMKCCFRNRKYKLGLEILSAMK 198 (410)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (410)
|+..|++....+ .++..++..+..++...|++++|++++.+....+. .-+...+...+.++.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 23444444555666666666666666666544432 1245555555666666666666666666665
Q ss_pred HcCCCC-----ChhhHHHHHHHH--HHcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 015246 199 RKGYTF-----DGFGYCTVIAAF--VKIG--RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 199 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
+. .| +..+...++.++ ...| ++.+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 33 233444444342 2223 566666666665443 23322223333356666666666666665443
Q ss_pred C-----C----CCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 015246 270 Q-----G----FECDKYTHTILIDGLCKAGNIKGARLHLEYMNKI 305 (410)
Q Consensus 270 ~-----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 305 (410)
. + -+-++.++..++......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 2 0 02244445444444444454 556666666653
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.40 E-value=8.2e-12 Score=102.56 Aligned_cols=132 Identities=15% Similarity=0.041 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHc------C-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CC
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRK------G-YTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-------VQ 238 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~ 238 (410)
++..+..++...|++++|+..++++.+. + .+....++..+..++...|++++|...+++..... .+
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444444322 1 01122334444445555555555555555444320 01
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 239 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------GFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.....+..+...+...|++++|...++++.+. +..| ...++..+...+...|++++|...++++.+
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12334444555555555555555555555432 0011 233444555555555555555555555443
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.40 E-value=1e-10 Score=96.47 Aligned_cols=132 Identities=13% Similarity=-0.055 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC-C----h
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKGY---TF--DGFGYCTVIAAFVKI-GRLKEATDYMEQMVTDGVQL-D----I 241 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~ 241 (410)
+|..+..+|...|++++|+..+++..+... .+ -..++..+..+|... |++++|+..+++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344444444444455544444444432210 00 012334444444443 55555555555544321000 0 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch------HHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK------YTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.++..+...+...|++++|...|++..+....... ..+..+..++...|++++|...+++..+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23444444455555555555555554443211111 0233344444444555555555444443
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.38 E-value=1e-11 Score=102.05 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
..++..+...+...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777777777777777777665
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.37 E-value=1.2e-10 Score=96.06 Aligned_cols=204 Identities=11% Similarity=-0.013 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHHcCCHHHH
Q 015246 151 RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK----GYTFD-GFGYCTVIAAFVKIGRLKEA 225 (410)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 225 (410)
++++|...|++. ...|...|++++|...|.+..+. +.+++ ..++..+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666654 33456677888888777776543 21111 45788889999999999999
Q ss_pred HHHHHHHHHcCCCC-C----hhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-c----hHHHHHHHHHHHhcCChhH
Q 015246 226 TDYMEQMVTDGVQL-D----IVSYNTLINLYCKE-GKLEAAYLLLDEMEKQGFEC-D----KYTHTILIDGLCKAGNIKG 294 (410)
Q Consensus 226 ~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 294 (410)
+..+++..+..... + ..++..+...|... |++++|...|++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999887642110 1 34678888889886 99999999999887542110 1 3467888899999999999
Q ss_pred HHHHHHHHHhcCCCCCH------HHHHHHHHHHHccCChHHHHHHHHhhccCCch--------hHHHHHHHHH--hcCCh
Q 015246 295 ARLHLEYMNKIGFDSNL------EAYNCIVDRLGKDGKIDHAINVFESMEVKDSF--------TYSSMVHNLC--KAKRL 358 (410)
Q Consensus 295 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~--~~~~~ 358 (410)
|...+++..+....... ..+..+..++...|++++|...+++....++. .+..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999875322211 14677788889999999999999998775322 2334455553 34567
Q ss_pred hhHHHHHHHHH
Q 015246 359 PSASKLLLSCL 369 (410)
Q Consensus 359 ~~A~~~~~~~~ 369 (410)
++|+..|+++.
T Consensus 257 ~~A~~~~~~~~ 267 (292)
T 1qqe_A 257 SEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTSS
T ss_pred HHHHHHhccCC
Confidence 78888887765
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.33 E-value=1.3e-10 Score=94.20 Aligned_cols=192 Identities=8% Similarity=-0.055 Sum_probs=128.7
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CchH
Q 015246 203 TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD---IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE--CDKY 277 (410)
Q Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 277 (410)
+.+...+......+.+.|++++|...|+.+.+..+. + ...+..+..++...|++++|...|+++.+.... ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 345566777778888889999999999988876322 3 566777888888899999999999988876321 1244
Q ss_pred HHHHHHHHHHh--------cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHH
Q 015246 278 THTILIDGLCK--------AGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMV 349 (410)
Q Consensus 278 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 349 (410)
.+..+..++.. .|++++|...|+++.+.. +.+......+.. +..........+..++
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAKLARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 56677777777 888889999888888752 222222211111 1111111112245667
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCC--cHhhHHHHHHHHhhc----------CCHHHHHHHHHHHHHccCCC
Q 015246 350 HNLCKAKRLPSASKLLLSCLKSGVRI--LKSAQKAVVDGLRHS----------GCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~ 410 (410)
.++...|++++|+..|+++++..... ....+..++.+|... |++++|...++++.+..|+|
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 77888888888888888887653111 245666777777655 77888888888888777654
No 93
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.31 E-value=1.1e-08 Score=90.22 Aligned_cols=345 Identities=10% Similarity=-0.070 Sum_probs=221.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHc-CC-CCChHhHHHHHHHHH----hcCCh
Q 015246 10 VSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSL-LSCSLDLLDEMLEM-GI-PPDVWSYNSLMHCLF----QLGKP 82 (410)
Q Consensus 10 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~ 82 (410)
|+++.+..+|++.... .|+...|...+....+.+. .+....+|+..... |. +++...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999985 5899999998888877663 46677888887764 42 236677777777554 24678
Q ss_pred hHHHHHHHHHhcCCCCCChhHHHHHHHHHh-------------hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015246 83 DEANRVFQDMICGDLTPCTATFNIMLNGLC-------------KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 149 (410)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (410)
+.+.++|++.+......-...|......-. ..+.+..|..+++.+...-...+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 899999999987432111223332222111 1122334444454443310011334565555443322
Q ss_pred C--C-----HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 015246 150 G--R-----LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 222 (410)
Q Consensus 150 ~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (410)
+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.... |.+...+. .|....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 1 1 345678898887743 346788888888889999999999999999988 44433222 22222111
Q ss_pred HHHHHHHHHHHHcC------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh-c
Q 015246 223 KEATDYMEQMVTDG------------VQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK-A 289 (410)
Q Consensus 223 ~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 289 (410)
++. ++.+.+.- .......|...+....+.++.+.|..+|.++ ... ..+...|...+..-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHC
Confidence 111 22222210 0112245666677777788899999999999 321 2344444433322222 3
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
++.+.|..+|+...+. .+.++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 334 ~d~~~ar~ife~al~~-~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLK-HPDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CCSHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4699999999999875 33345667777888888999999999999984 356778888887788899999999998887
Q ss_pred H
Q 015246 370 K 370 (410)
Q Consensus 370 ~ 370 (410)
.
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 4
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=7.3e-10 Score=89.79 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=28.7
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhhcCchHHHHHHHHHHHh
Q 015246 66 VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC---TATFNIMLNGLCKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 66 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (410)
...+..+...+...|++++|...|+.++... +.+ ...+..+..++...|++++|...|+++.+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ 80 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3344444444445555555555555544432 112 33444444444444555555544444444
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.29 E-value=7.2e-10 Score=87.56 Aligned_cols=188 Identities=11% Similarity=-0.021 Sum_probs=127.2
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch--HHHHH
Q 015246 206 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL--DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK--YTHTI 281 (410)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 281 (410)
...+..+...+...|++++|...|+++.+..+.. ....+..+..++.+.|++++|...|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3455566778889999999999999998863321 1356777888999999999999999999876422111 24444
Q ss_pred HHHHHHh------------------cCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHhhccCCc
Q 015246 282 LIDGLCK------------------AGNIKGARLHLEYMNKIGFDSN-LEAYNCIVDRLGKDGKIDHAINVFESMEVKDS 342 (410)
Q Consensus 282 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 342 (410)
+..++.. .|++++|...|+++++. .|+ ...+...... ..+.....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l--------------~~~~~~~~ 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL--------------VFLKDRLA 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH--------------HHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH--------------HHHHHHHH
Confidence 5555543 45667777777777664 232 2222111110 00000001
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc---HhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL---KSAQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
.....++..+...|++++|+..|+++++.. |.+ ...+..+..++.+.|++++|.+.++.+...++.|
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 122456778889999999999999999763 222 2568888999999999999999999999888764
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.28 E-value=2.2e-10 Score=89.31 Aligned_cols=155 Identities=11% Similarity=-0.028 Sum_probs=79.1
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHhcCChhhHHHHHHHHHHcCCCCChHh
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNS----------------LIAGATRNSLLSCSLDLLDEMLEMGIPPDVWS 68 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 68 (410)
.+.+.|++++|++.|++..+.. +.+...|.. +..++...|++++|+..|++..+..+ .+...
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHH
Confidence 5667899999999999988764 223445544 55555555555555555555555422 24455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY--TDNALRMFRGLQKHGFVPELVTYNILIKGL 146 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (410)
+..+..++...|++++|.+.|+++++.. |.+..++..+..++...|+ ...+...++.... ..|....+.....++
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~ 167 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSK 167 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHH
Confidence 5555555555555555555555555543 3444555555555443332 2223333333321 111112222233344
Q ss_pred HhcCCHHHHHHHHHHHhh
Q 015246 147 CKAGRLRTARWILKELGD 164 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~ 164 (410)
...|++++|...|++..+
T Consensus 168 ~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 168 LFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHTHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 444555555555555554
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=2.4e-10 Score=82.09 Aligned_cols=128 Identities=15% Similarity=0.065 Sum_probs=74.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcC
Q 015246 280 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAK 356 (410)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 356 (410)
..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++... +...+..++..+...|
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 334444444555555555555544432 223344444455555555555555555544332 3345555666666777
Q ss_pred ChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 357 RLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 357 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
++++|.+.++++.+.. +.+...+..++..+...|++++|...++++...+++
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7777777777776553 445666667777777777777777777777766654
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.26 E-value=5.1e-10 Score=87.18 Aligned_cols=113 Identities=11% Similarity=0.060 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHH----------------HHHHHHhcCChhHHHHHHHHHhcC
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNS----------------LMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
..+......+...|++++|+..|++..+..+ .+...+.. +..++...|++++|...|++.++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3444455667788888888888888877531 13334444 444455555555555555554444
Q ss_pred CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 015246 96 DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLC 147 (410)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 147 (410)
. +.+...+..+..++...|++++|...|++..+..+ .+..++..+..+|.
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYY 133 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3 33444444555555555555555555555544321 13444444444443
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=7.9e-10 Score=79.36 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhh
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCK 113 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (410)
|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|.+.++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444455555555555555555554432 1234444445555555555555555555554433 3334444445555555
Q ss_pred cCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 015246 114 NRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGD 164 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 164 (410)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555544432 12344444444555555555555555544443
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.22 E-value=4e-09 Score=82.28 Aligned_cols=173 Identities=14% Similarity=0.073 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC----CHHHHHHHHH
Q 015246 190 GLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG----KLEAAYLLLD 265 (410)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 265 (410)
|.+.|++..+.| +...+..+...|...+++++|...|++..+.+ ++..+..+...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 445555555543 44455555555556666666666666665542 34445555555554 4 5666666666
Q ss_pred HHHhCCCCCchHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHc----cCChHHHHHHHHh
Q 015246 266 EMEKQGFECDKYTHTILIDGLCK----AGNIKGARLHLEYMNKIGFD-SNLEAYNCIVDRLGK----DGKIDHAINVFES 336 (410)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 336 (410)
+..+.+ ++..+..+...|.. .+++++|..+|++..+.+.. .++..+..+...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 655443 33444445555544 45555555555555554311 013444455555544 4455555555555
Q ss_pred hccC--CchhHHHHHHHHHhc-C-----ChhhHHHHHHHHHHcC
Q 015246 337 MEVK--DSFTYSSMVHNLCKA-K-----RLPSASKLLLSCLKSG 372 (410)
Q Consensus 337 ~~~~--~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~ 372 (410)
.... ++..+..+...|... | ++++|..+|++..+.|
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4432 444444444444432 1 4555555555555443
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.22 E-value=3.8e-10 Score=104.25 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=75.7
Q ss_pred HhccchhHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 015246 182 FRNRKYKLGLEILSAMK--------RKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCK 253 (410)
Q Consensus 182 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 253 (410)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...++++.+.+ +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44455555555555554 221 3333444445555555555555555555555432 1234445555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 015246 254 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 333 (410)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 333 (410)
.|++++|...|++..+.. +.+...+..+..++...|++++ ...|+++.+.+ +.+...+..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555442 1134444555555555555555 55555555432 22344455555555555555555555
Q ss_pred HHhhccC
Q 015246 334 FESMEVK 340 (410)
Q Consensus 334 ~~~~~~~ 340 (410)
|+++...
T Consensus 557 ~~~al~l 563 (681)
T 2pzi_A 557 LDEVPPT 563 (681)
T ss_dssp HHTSCTT
T ss_pred HHhhccc
Confidence 5555443
No 102
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.21 E-value=2.3e-10 Score=105.67 Aligned_cols=171 Identities=12% Similarity=-0.081 Sum_probs=93.2
Q ss_pred hhcCChHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015246 7 CQFVSFDAGYTILNRMR--------EAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ 78 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (410)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|++.|++..+.+. .+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 34566666666666665 322 33445555566666666666666666666655422 244555556666666
Q ss_pred cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 015246 79 LGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWI 158 (410)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 158 (410)
.|++++|.+.|++..+.. +.+...+..+..++...|++++ ...|++..+.+. .+...|..+..++.+.|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666655543 3445555566666666666666 666666555422 2445555566666666666666666
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHh
Q 015246 159 LKELGDSGHAPNAITYTTIMKCCFR 183 (410)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (410)
|++..+... .+...+..+..++..
T Consensus 557 ~~~al~l~P-~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSR-HFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTST-THHHHHHHHHHHTC-
T ss_pred HHhhcccCc-ccHHHHHHHHHHHHc
Confidence 665554321 123344444444433
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=3.3e-08 Score=80.80 Aligned_cols=220 Identities=8% Similarity=0.006 Sum_probs=123.7
Q ss_pred CChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--ChhHHHHHHHHHhcCCCCCChhHHHHHHHHH----hhc---C
Q 015246 45 SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG--KPDEANRVFQDMICGDLTPCTATFNIMLNGL----CKN---R 115 (410)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 115 (410)
...++|+++++.+...++. +..+|+.--.++...| +++++++.++.++..+ +-+..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 3345777777777775422 4455666666666666 7777777777777655 55556666544444 333 5
Q ss_pred chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc------h
Q 015246 116 YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR--TARWILKELGDSGHAPNAITYTTIMKCCFRNRK------Y 187 (410)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 187 (410)
++++++.+++.+.+...+ +..+|+.-.-.+.+.|.++ ++++.++++.+..+ -|...|+.-.......+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhH
Confidence 667777777777665332 6666666666666666666 66777777666543 355556555555444444 5
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHH-HHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 015246 188 KLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLK-EATDYMEQMVTDG--VQLDIVSYNTLINLYCKEGKLEAAYLLL 264 (410)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 264 (410)
+++++.++.++... +-|...++.+...+.+.|+.. .+..+..++.+.+ -+.++..+..++.++.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 55666666655554 445555555555555555422 2333333333221 1223444555555555555555555555
Q ss_pred HHHHh
Q 015246 265 DEMEK 269 (410)
Q Consensus 265 ~~~~~ 269 (410)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55543
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.21 E-value=1.2e-10 Score=85.37 Aligned_cols=144 Identities=10% Similarity=-0.044 Sum_probs=94.4
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
..+...|++++|++.+....... +.+...+..+...|.+.|++++|++.|++..+... .+..+|..+..++...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchH
Confidence 34556777777877777766542 22334555677777778888888888877777542 35677777777777778888
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRM-FRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
+|...|++.++.+ +.+..++..+...+.+.|++++|.+. +++..+.. |-++..|......+...|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 8887777777664 45567777777777777777665544 46666542 2255666666665555553
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.20 E-value=3.6e-08 Score=80.60 Aligned_cols=226 Identities=9% Similarity=-0.020 Sum_probs=180.1
Q ss_pred hhhhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCChHhHHHHHHHH----H
Q 015246 5 AYCQFVSF-DAGYTILNRMREAGISPDVVTYNSLIAGATRNS--LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCL----F 77 (410)
Q Consensus 5 ~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 77 (410)
+..+.|.+ ++|+++++.+...+ +-+..+|+.--.++...+ +++++++.++.+...++. +..+|+.-..++ .
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHH
Confidence 33444444 68999999999886 556778998888888888 999999999999987543 566676655555 4
Q ss_pred hc---CChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-
Q 015246 78 QL---GKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTD--NALRMFRGLQKHGFVPELVTYNILIKGLCKAGR- 151 (410)
Q Consensus 78 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 151 (410)
.. +++++++++++.+.+.. +.+..+|+.-..++.+.|.++ ++++.++++.+..+. |...|+.....+...+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG
T ss_pred hccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc
Confidence 55 78999999999999877 778899998888888888888 999999999987554 88888887777777776
Q ss_pred -----HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhH-HHHHHHHHHHcC--CCCChhhHHHHHHHHHHcCCHH
Q 015246 152 -----LRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL-GLEILSAMKRKG--YTFDGFGYCTVIAAFVKIGRLK 223 (410)
Q Consensus 152 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 223 (410)
++++++.++.+....+ -|...|+.+...+.+.|.... +..+..++.+.+ -+.+...+..++.++.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 8899999998887654 478888888888888777444 555666665432 1446778888999999999999
Q ss_pred HHHHHHHHHHHc
Q 015246 224 EATDYMEQMVTD 235 (410)
Q Consensus 224 ~a~~~~~~~~~~ 235 (410)
+|.++++.+.+.
T Consensus 276 ~A~~~~~~l~~~ 287 (306)
T 3dra_A 276 ESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.19 E-value=5.3e-09 Score=82.54 Aligned_cols=182 Identities=8% Similarity=-0.043 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCCh---hHHHHHH
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPP--DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCT---ATFNIML 108 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~ 108 (410)
+..+...+...|++++|+..|+++.+..... ....+..+..++.+.|++++|...|+++.+.. +.+. ..+..+.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHH
Confidence 3334444555555555555555555432110 02344444555555555555555555554432 1111 1222222
Q ss_pred HHH------------------hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc
Q 015246 109 NGL------------------CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 170 (410)
Q Consensus 109 ~~~------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (410)
.++ ...|++++|...|+++.+.. +-+...+....... .+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~-------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL-------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH--------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH--------
Confidence 222 33567778888888777652 21222222211100 000000
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 015246 171 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFD---GFGYCTVIAAFVKIGRLKEATDYMEQMVTDG 236 (410)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 236 (410)
......+...+.+.|++++|+..|+.+.+.. |.+ ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112345667788888888888888888763 222 2457777888888888888888888887753
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.18 E-value=3.5e-10 Score=85.57 Aligned_cols=163 Identities=8% Similarity=-0.046 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH-H
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG-L 111 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 111 (410)
.+......+...|++++|...|++..+.. |.+...+..+..++...|++++|...|+.+.... |+...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 34456667778888888888888876643 2356777888888888888888888888876553 244433332222 1
Q ss_pred hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-cHHHHHHHHHHHHhccchhHH
Q 015246 112 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKYKLG 190 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 190 (410)
...+....|...+++..+.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233345677888877653 2367778888888888888888888888887765432 355777788888888888888
Q ss_pred HHHHHHHHH
Q 015246 191 LEILSAMKR 199 (410)
Q Consensus 191 ~~~~~~~~~ 199 (410)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.18 E-value=2.4e-10 Score=83.84 Aligned_cols=81 Identities=7% Similarity=-0.155 Sum_probs=32.6
Q ss_pred HHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 106 IMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 106 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
.+...|.+.|++++|.+.|++..+... -+..+|..+..++...|++++|...|++..+..+ -+...+..+..++.+.|
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 344444444444444444444443311 1334444444444444444444444444433211 12333444444444444
Q ss_pred chh
Q 015246 186 KYK 188 (410)
Q Consensus 186 ~~~ 188 (410)
+++
T Consensus 114 ~~~ 116 (150)
T 4ga2_A 114 VTD 116 (150)
T ss_dssp SSS
T ss_pred ChH
Confidence 443
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.17 E-value=9.8e-09 Score=80.07 Aligned_cols=141 Identities=9% Similarity=-0.039 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC----ChhHHHHHH
Q 015246 14 AGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG----KPDEANRVF 89 (410)
Q Consensus 14 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 89 (410)
+|++.|++..+. .++.++..+...|...+++++|.+.|++..+.| ++..+..|...|.. + ++++|.++|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 344555555543 244455555555555555555555555555432 34444444444444 3 455555555
Q ss_pred HHHhcCCCCCChhHHHHHHHHHhh----cCchHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 015246 90 QDMICGDLTPCTATFNIMLNGLCK----NRYTDNALRMFRGLQKHGFV-PELVTYNILIKGLCK----AGRLRTARWILK 160 (410)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 160 (410)
++..+.+ +...+..|...|.. .+++++|..+|++..+.|.. .++..+..|...|.. .+++++|...|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5554332 33344444444444 44555555555554443211 013344444444444 444444444444
Q ss_pred HHhh
Q 015246 161 ELGD 164 (410)
Q Consensus 161 ~~~~ 164 (410)
+..+
T Consensus 154 ~A~~ 157 (212)
T 3rjv_A 154 GSSS 157 (212)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=2.5e-09 Score=87.81 Aligned_cols=164 Identities=12% Similarity=-0.009 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHH-HHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFN-IML 108 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~ 108 (410)
+...+..+...+...|++++|...|++..+... .+...+..+...+...|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 344444555555555555555555555555422 244455555555555555555555555554432 2222211 112
Q ss_pred HHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-cHHHHHHHHHHHHhccch
Q 015246 109 NGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP-NAITYTTIMKCCFRNRKY 187 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 187 (410)
..+...++.+.|...+++..... +.+...+..+...+...|++++|...|+++....... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 22334444555555555554442 2244555555555555555555555555555432211 134445555555555555
Q ss_pred hHHHHHHHHH
Q 015246 188 KLGLEILSAM 197 (410)
Q Consensus 188 ~~a~~~~~~~ 197 (410)
++|...+++.
T Consensus 272 ~~a~~~~r~a 281 (287)
T 3qou_A 272 DALASXYRRQ 281 (287)
T ss_dssp CHHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 5555544443
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.16 E-value=1e-09 Score=99.68 Aligned_cols=161 Identities=9% Similarity=-0.003 Sum_probs=118.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHH
Q 015246 219 IGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLH 298 (410)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 298 (410)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988763 3357888889999999999999999999998874 33677888899999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhc---CChhhHHHHHHHHHHcC
Q 015246 299 LEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA---KRLPSASKLLLSCLKSG 372 (410)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 372 (410)
+++..+.. +.+...+..+..++...|++++|.+.+++.... +...+..+..++... |++++|.+.++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99998863 446788889999999999999999999987655 567788889999999 99999999999998775
Q ss_pred CCCcHhhHHHH
Q 015246 373 VRILKSAQKAV 383 (410)
Q Consensus 373 ~~~~~~~~~~l 383 (410)
+.+...+..+
T Consensus 159 -p~~~~~~~~l 168 (568)
T 2vsy_A 159 -VGAVEPFAFL 168 (568)
T ss_dssp -CCCSCHHHHT
T ss_pred -CcccChHHHh
Confidence 3344444333
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.16 E-value=5.2e-09 Score=85.86 Aligned_cols=166 Identities=11% Similarity=-0.003 Sum_probs=88.4
Q ss_pred CCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHH-
Q 015246 98 TPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTT- 176 (410)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 176 (410)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.... |+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3344455555556666666666666666665542 2245555666666666666666666666555432 23222211
Q ss_pred HHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcC
Q 015246 177 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEG 255 (410)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 255 (410)
....+...++.+.|+..+++..... |.+...+..+...+...|++++|...+.++.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 1222444555555566666555554 4445555556666666666666666666665542221 1344555555555555
Q ss_pred CHHHHHHHHHHH
Q 015246 256 KLEAAYLLLDEM 267 (410)
Q Consensus 256 ~~~~a~~~~~~~ 267 (410)
+.++|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555555555443
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=1.3e-09 Score=82.34 Aligned_cols=157 Identities=13% Similarity=0.042 Sum_probs=68.3
Q ss_pred HHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHH-HHhcc
Q 015246 107 MLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKC-CFRNR 185 (410)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 185 (410)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..... |+...+...... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3344444555555555555444321 1134444445555555555555555555444322 122221111111 11111
Q ss_pred chhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHH
Q 015246 186 KYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL-DIVSYNTLINLYCKEGKLEAAYLLL 264 (410)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 264 (410)
....++..+++..+.. |.+...+..+..++...|++++|...++++.+..+.+ +...+..+..++...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223444455544443 3334445555555555555555555555555432221 1334445555555555555555555
Q ss_pred HHH
Q 015246 265 DEM 267 (410)
Q Consensus 265 ~~~ 267 (410)
++.
T Consensus 168 ~~a 170 (176)
T 2r5s_A 168 RRQ 170 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=1.3e-09 Score=90.48 Aligned_cols=220 Identities=10% Similarity=-0.022 Sum_probs=154.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh-ccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR-NRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATD 227 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 227 (410)
.|++++|.+++++..+... . .+.. .++++.|...|.++ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4667777777776654211 1 0222 46677777666654 456788899999999
Q ss_pred HHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCc--hHHHHHHHHHHHhcCChhHHHH
Q 015246 228 YMEQMVTDGVQ-----LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---FECD--KYTHTILIDGLCKAGNIKGARL 297 (410)
Q Consensus 228 ~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~~~a~~ 297 (410)
.+.+..+.... .-..++..+..+|...|++++|...+++..+.. -.+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99988764111 114577888889999999999999999876431 1122 3567788888888 99999999
Q ss_pred HHHHHHhcCCC---C--CHHHHHHHHHHHHccCChHHHHHHHHhhccC---C------chhHHHHHHHHHhcCChhhHHH
Q 015246 298 HLEYMNKIGFD---S--NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D------SFTYSSMVHNLCKAKRLPSASK 363 (410)
Q Consensus 298 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~------~~~~~~l~~~~~~~~~~~~A~~ 363 (410)
.+++..+.... + ...++..+...+...|++++|+..|++.... + ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998763111 1 1457788899999999999999999988764 1 2356667777888899999999
Q ss_pred HHHHHHHcCCCCc------HhhHHHHHHHHhhcCCHHHHHHH
Q 015246 364 LLLSCLKSGVRIL------KSAQKAVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 364 ~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~ 399 (410)
.|++.+ . .|+ ......++.++ ..|+.+.+.++
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 999998 4 232 12344455545 67887776663
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.12 E-value=2.2e-09 Score=97.49 Aligned_cols=155 Identities=10% Similarity=-0.039 Sum_probs=119.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHH
Q 015246 9 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRV 88 (410)
Q Consensus 9 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 88 (410)
.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 588999999999998765 4567889999999999999999999999999864 33678899999999999999999999
Q ss_pred HHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhC
Q 015246 89 FQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA---GRLRTARWILKELGDS 165 (410)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 165 (410)
+++..+.. +.+...+..+..++...|++++|.+.+++..+... .+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998875 66788999999999999999999999999988643 3678888999999999 9999999999998875
Q ss_pred CC
Q 015246 166 GH 167 (410)
Q Consensus 166 ~~ 167 (410)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.07 E-value=1.4e-09 Score=79.29 Aligned_cols=95 Identities=8% Similarity=0.007 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHH
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 352 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 352 (410)
...+..+...+...|++++|...|+++.+.. +.+...|..+..++...|++++|...|++.... ++..|..+..++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3456666777777788888888887777753 445667777777777778888887777766543 666777777777
Q ss_pred HhcCChhhHHHHHHHHHHc
Q 015246 353 CKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~ 371 (410)
...|++++|+..|+++++.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7778888888777777765
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=2.3e-08 Score=83.01 Aligned_cols=199 Identities=7% Similarity=-0.054 Sum_probs=98.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHH
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATR-NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEAN 86 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 86 (410)
..|++++|.+++++..+.. +.. +.+ .++++.|...|+.. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 4688899999999887642 110 011 34444444444433 22344455555555
Q ss_pred HHHHHHhcCCC---CC--ChhHHHHHHHHHhhcCchHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 015246 87 RVFQDMICGDL---TP--CTATFNIMLNGLCKNRYTDNALRMFRGLQKH----GFVP-ELVTYNILIKGLCKAGRLRTAR 156 (410)
Q Consensus 87 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~ 156 (410)
..|.+...... .+ -..+|+.+..+|...|++++|...|++.... |.+. ...++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 55544433210 00 1234455555555555555555555554331 1100 12344555555555 6666666
Q ss_pred HHHHHHhhCC----CCC-cHHHHHHHHHHHHhccchhHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHHcCCHHHHH
Q 015246 157 WILKELGDSG----HAP-NAITYTTIMKCCFRNRKYKLGLEILSAMKRK----GYTFD-GFGYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 157 ~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~ 226 (410)
..|++..... ..+ ...++..+..++...|++++|+..+++..+. +..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6665554311 000 1344555566666666666666666665543 11111 123444555555566666666
Q ss_pred HHHHHHH
Q 015246 227 DYMEQMV 233 (410)
Q Consensus 227 ~~~~~~~ 233 (410)
..+++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666665
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.03 E-value=7.8e-09 Score=80.81 Aligned_cols=129 Identities=11% Similarity=-0.057 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 015246 242 VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRL 321 (410)
Q Consensus 242 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 321 (410)
..+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345566777888999999999998774 5577888889999999999999999999988763 45677888889999
Q ss_pred HccCChHHHHHHHHhhccC---Cc----------------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH
Q 015246 322 GKDGKIDHAINVFESMEVK---DS----------------FTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 377 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~---~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 377 (410)
...|++++|...|++.... +. ..+..++.++...|++++|...++++++. .|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 9999999999999988764 22 67888888899999999999999998855 4543
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.03 E-value=4.7e-09 Score=74.19 Aligned_cols=105 Identities=15% Similarity=0.038 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHH
Q 015246 277 YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLC 353 (410)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~ 353 (410)
..+......+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++.... +...|..++.++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456666777777777777777777777653 445666777777777777777777777766543 4556677777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCCcHhhHHHH
Q 015246 354 KAKRLPSASKLLLSCLKSGVRILKSAQKAV 383 (410)
Q Consensus 354 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 383 (410)
..|++++|++.|+++++.. |.+...+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 7777777777777777653 3344444443
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.02 E-value=1.6e-08 Score=80.76 Aligned_cols=125 Identities=13% Similarity=-0.015 Sum_probs=59.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCC-----chhHHHHHHHHHhcC
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD-----SFTYSSMVHNLCKAK 356 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~ 356 (410)
+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...... ...+..+..++...|
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 3344445555555555555444321 222233334444555555555555555443321 124445555555555
Q ss_pred ChhhHHHHHHHHHHcCCCC--cHhhHHHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 357 RLPSASKLLLSCLKSGVRI--LKSAQKAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 357 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
++++|+..|++.......| ..........++.+.|+.++|..+|+++...+|
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5555555555554322112 223444445555555555555555555555443
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=3e-09 Score=86.96 Aligned_cols=99 Identities=11% Similarity=0.023 Sum_probs=59.4
Q ss_pred cHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN 249 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 249 (410)
+...+..+...+...|++++|+..+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455556666666666666666666666553 3455556666666666666666666666666542 224455556666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 015246 250 LYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~ 270 (410)
++...|++++|...|.+..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665543
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.99 E-value=7.2e-07 Score=73.75 Aligned_cols=173 Identities=9% Similarity=-0.028 Sum_probs=96.2
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc-C-chHH
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG-KPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN-R-YTDN 119 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~ 119 (410)
+.+..++|+++++.+...+.. +..+|+.--.++...| .++++++.++.++... +-+..+|+.-..++... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 344445677777777665422 4445555555555566 4677777777776655 55666666655555554 4 6667
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc-----
Q 015246 120 ALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLR--------TARWILKELGDSGHAPNAITYTTIMKCCFRNRK----- 186 (410)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 186 (410)
++.+++++.+...+ |..+|+.-.-.+.+.|.++ ++++.++++.+..+ -|...|+.....+.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccch
Confidence 77777776665332 5555555444444444444 56666666655433 255555555555554443
Q ss_pred --hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcC
Q 015246 187 --YKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIG 220 (410)
Q Consensus 187 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (410)
++++++.+.++.... +-|...++.+-..+.+.|
T Consensus 222 ~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 455556665555553 444445544444444433
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.98 E-value=1.1e-07 Score=74.26 Aligned_cols=126 Identities=7% Similarity=-0.074 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 140 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
..+...+...|++++|...|++.. .|+...+..+..++...|++++|+..+++..+.. +.+...+..+..++...
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 334445555555555555555442 2345555555555555666666666665555543 33445555555556666
Q ss_pred CCHHHHHHHHHHHHHcCCCC---------------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 220 GRLKEATDYMEQMVTDGVQL---------------DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
|++++|...++...+..... ....+..+..++...|++++|...|++..+.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666655532110 1144555566666666666666666666654
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.98 E-value=1e-07 Score=78.50 Aligned_cols=161 Identities=12% Similarity=0.001 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---Cc--hH
Q 015246 208 GYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDI-----VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFE---CD--KY 277 (410)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 277 (410)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3344455566666666666666665554221110 11223334445556666666666665543111 11 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHccCChHHHHHHHHhhccC---------Cc
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKI-GFDSN-----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DS 342 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~ 342 (410)
+++.+...|...|++++|...+++..+. ...|+ ..++..+..+|...|++++|...+++.... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5555666666666666666666665421 00111 134555555666666666666665554332 03
Q ss_pred hhHHHHHHHHHhcCChhhH-HHHHHHH
Q 015246 343 FTYSSMVHNLCKAKRLPSA-SKLLLSC 368 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A-~~~~~~~ 368 (410)
.+|..++.++...|++++| ...++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3455555555556665555 4445544
No 125
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.97 E-value=6.8e-07 Score=73.57 Aligned_cols=127 Identities=11% Similarity=-0.061 Sum_probs=58.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCC-Cc----HHHHHHHHHHHHhccchhHHHHHHHHHHHc-----CCCC-ChhhHH
Q 015246 142 LIKGLCKAGRLRTARWILKELGDSGHA-PN----AITYTTIMKCCFRNRKYKLGLEILSAMKRK-----GYTF-DGFGYC 210 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~ 210 (410)
+...+...+++++|+..+++....... ++ ..+++.+..+|...|++++|+..++++.+. +..+ ...++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 334444444555555555554442111 11 223444555555555555555555554421 1011 122445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 015246 211 TVIAAFVKIGRLKEATDYMEQMVTD----GVQLD-IVSYNTLINLYCKEGK-LEAAYLLLDEME 268 (410)
Q Consensus 211 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~ 268 (410)
.+..+|...|++++|...+++..+. +..+. ..++..+..++...|+ +++|...+++..
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 5555555555555555555554432 11111 3455555555555653 455655555543
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=2.3e-09 Score=78.29 Aligned_cols=108 Identities=11% Similarity=-0.002 Sum_probs=86.3
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-
Q 015246 262 LLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK- 340 (410)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 340 (410)
..++++.... +.+...+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|++....
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555442 2245567778888899999999999999988763 457788888889999999999999999987654
Q ss_pred --CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 341 --DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 341 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++..+..+..++...|++++|+..|+++++.
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6778888999999999999999999998865
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.97 E-value=5.6e-07 Score=74.08 Aligned_cols=162 Identities=12% Similarity=0.047 Sum_probs=98.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCcH----HHHHHHHHHHHhccchhHHHHHHHHHHHcCCC-CC----hhhHHH
Q 015246 142 LIKGLCKAGRLRTARWILKELGDSGH-APNA----ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-FD----GFGYCT 211 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 211 (410)
.+..+...|++++|...+++...... .|+. ..+..+...+...+++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776322 2221 12334555666667888888888887764222 12 125677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-chHHHH
Q 015246 212 VIAAFVKIGRLKEATDYMEQMVTD-----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ----GFEC-DKYTHT 280 (410)
Q Consensus 212 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 280 (410)
+..+|...|++++|...++++.+. +..+ ...++..+..+|...|++++|...+++..+. +..+ -..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 777777888888888888777641 1111 1235566666777777777777777666432 1111 144566
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHH
Q 015246 281 ILIDGLCKAGN-IKGARLHLEYMN 303 (410)
Q Consensus 281 ~l~~~~~~~~~-~~~a~~~~~~~~ 303 (410)
.+..++...|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 66666666663 466766666654
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.96 E-value=2e-06 Score=71.19 Aligned_cols=175 Identities=9% Similarity=-0.022 Sum_probs=123.7
Q ss_pred HhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcC-chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHH
Q 015246 77 FQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNR-YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA-G-RLR 153 (410)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 153 (410)
...+..++|+++++.++..+ +-+..+|+.--.++...+ .+++++..++.+.....+ +..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 34455678999999998876 667788888877777778 599999999999987544 777888777777766 6 788
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchh--------HHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC----
Q 015246 154 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYK--------LGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR---- 221 (410)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 221 (410)
++++.++.+.+... -+...|+.-..+..+.+.++ ++++.++++.+.. +.+...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 99999999887653 37777777666666666666 7777888777765 5566667666666666654
Q ss_pred ---HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015246 222 ---LKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 256 (410)
Q Consensus 222 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (410)
++++++.+++.....+ -|...|+-+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 5666666666666532 255555554444444443
No 129
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.95 E-value=9.3e-07 Score=72.76 Aligned_cols=164 Identities=12% Similarity=0.047 Sum_probs=89.9
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh-----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CC--hh
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG-----FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ---LD--IV 242 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 242 (410)
.+...+..+...|++++|.+.+....+....... ..+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666667777777777666654311110 11223444455566777777777666643111 11 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh---CCC-CC--chHHHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCC-CH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEK---QGF-EC--DKYTHTILIDGLCKAGNIKGARLHLEYMNKIG----FDS-NL 311 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 311 (410)
+++.+...|...|++++|...+++..+ ... .+ ...++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 556666667777777777777766652 111 11 11356666666777777777777776655421 000 14
Q ss_pred HHHHHHHHHHHccCChHHH-HHHHHh
Q 015246 312 EAYNCIVDRLGKDGKIDHA-INVFES 336 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A-~~~~~~ 336 (410)
.++..+..+|.+.|++++| ...+++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4566666667777777776 554543
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.93 E-value=2.8e-08 Score=70.12 Aligned_cols=111 Identities=12% Similarity=0.020 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+......+.+.|++++|++.|++..+.. |.+..+|..+..++...|++++|.+.|++.++.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4567778888999999999999999988864 3367888889999999999999999999988876 6678889999999
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
+...|++++|.+.|++..+..+ .+...+..+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P-~~~~a~~~l~~ 123 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDP-SNEEAREGVRN 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCc-CCHHHHHHHHH
Confidence 9999999999999999888632 25555555443
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.92 E-value=1.8e-08 Score=76.20 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=91.3
Q ss_pred hhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHH-HHhcCCh-
Q 015246 5 AYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHC-LFQLGKP- 82 (410)
Q Consensus 5 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~- 82 (410)
.+...|++++|++.++...+.. +.+...+..+...+...|++++|...|++..+... .+...+..+..+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcc
Confidence 3566788888888888887765 45677888888888888888888888888877542 356677777777 6678887
Q ss_pred -hHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCC
Q 015246 83 -DEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHG 131 (410)
Q Consensus 83 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 131 (410)
++|...|+.+.... +.+...+..+..++...|++++|...++++.+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 88888888887765 4556777778888888888888888888887753
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.92 E-value=4.5e-08 Score=72.95 Aligned_cols=123 Identities=11% Similarity=-0.078 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhc
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKA 355 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 355 (410)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.... +...+..++.++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 3344444445555555555555544431 223444445555555555555555555544332 334455555556666
Q ss_pred CChhhHHHHHHHHHHcCCCCcHhhHHHH--HHHHhhcCCHHHHHHHHHHH
Q 015246 356 KRLPSASKLLLSCLKSGVRILKSAQKAV--VDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 356 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 403 (410)
|++++|...++++++.. +.+...+..+ +..+...|++++|.+.+++.
T Consensus 95 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 95 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 66666666666665542 2233333222 22255556666666666554
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=8.8e-09 Score=84.19 Aligned_cols=195 Identities=7% Similarity=-0.023 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
+...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456677777888888888888888888877532 366777888888888888888888888887765 556777888888
Q ss_pred HHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhH
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKL 189 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 189 (410)
++...|++++|...|++..+.+.. +...+...+....+. ...... ........+.+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 888888888888888877654210 100111111111111 111111 112222233333333333222 2577777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHH
Q 015246 190 GLEILSAMKRKGYTFDGFGYCTVIAAFVKI-GRLKEATDYMEQMVT 234 (410)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 234 (410)
|++.++...+.. +.+......+...+.+. +.++++.++|..+.+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777666552 22222223333333333 456677777776654
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=1.7e-08 Score=76.26 Aligned_cols=120 Identities=8% Similarity=0.063 Sum_probs=95.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCCh--
Q 015246 251 YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR-LGKDGKI-- 327 (410)
Q Consensus 251 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 327 (410)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 456788999999999988764 3467788889999999999999999999988763 3467778888888 7788998
Q ss_pred HHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 328 DHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 328 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
++|...++++... +...+..+..++...|++++|...++++++..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999987654 56778888899999999999999999998763
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.88 E-value=1.2e-07 Score=70.63 Aligned_cols=95 Identities=11% Similarity=0.020 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
.+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.+++..... +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444555555555555555555555432 1234445555555555555555555555554443 334444455555555
Q ss_pred hcCchHHHHHHHHHHHh
Q 015246 113 KNRYTDNALRMFRGLQK 129 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~ 129 (410)
..|++++|...+++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK 109 (166)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 55555555555555444
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.1e-07 Score=75.89 Aligned_cols=187 Identities=7% Similarity=-0.065 Sum_probs=124.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCC---------------
Q 015246 8 QFVSFDAGYTILNRMREAGISPDVVTYNSL-------IAGATRNSLLSCSLDLLDEMLEMGIPPD--------------- 65 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 65 (410)
+.++.+.|.+.|.++.+.. +-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5789999999999999886 4567788877 4566666666666666555544 2221
Q ss_pred -------hHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC--H
Q 015246 66 -------VWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE--L 136 (410)
Q Consensus 66 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~ 136 (410)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1223345667778888888888888877653 433355566667778888888888887554431 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--cHHHHHHHHHHHHhccchhHHHHHHHHHHHc
Q 015246 137 VTYNILIKGLCKAGRLRTARWILKELGDSGHAP--NAITYTTIMKCCFRNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 137 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (410)
..+..+..++...|++++|+..|++.......| ..........++.+.|+.++|...|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 356667777788888888888888776533213 2334555666777777778887777777766
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=4.9e-08 Score=75.51 Aligned_cols=92 Identities=16% Similarity=0.021 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHccCChHHHHHHHHhhccC-----C----c
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKI----GFDS--NLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----D----S 342 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~ 342 (410)
.+..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++.... + .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444444444555555555554443321 1011 1223344444455555555555555443321 1 1
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 343 FTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 343 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
.++..+..++...|++++|...+++.+
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 123445555556666666666665554
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.86 E-value=6.5e-09 Score=87.34 Aligned_cols=143 Identities=10% Similarity=-0.082 Sum_probs=74.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--------------hHhHHHHHHH
Q 015246 10 VSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD--------------VWSYNSLMHC 75 (410)
Q Consensus 10 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 75 (410)
+++++|++.|+...... +.+...+..+...+.+.|++++|+..|++..+...... ..++..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554443321 12445666677777777777777777777776532211 2445555555
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 015246 76 LFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTA 155 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 155 (410)
+.+.|++++|...|++++... +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..++...|+.+++
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443 3344455555555555555555555555554432 12344444444455555544444
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.84 E-value=9.6e-08 Score=68.07 Aligned_cols=115 Identities=13% Similarity=-0.042 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 351 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 351 (410)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.... +...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34455566666666666666666666666542 334556666666666677777777666665543 45566667777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC
Q 015246 352 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 391 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (410)
+...|++++|...++++++.. +.+...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 777777777777777777553 334455555665555544
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.84 E-value=2.2e-08 Score=72.56 Aligned_cols=96 Identities=9% Similarity=-0.048 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 351 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 351 (410)
+...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|...|++.... ++..+..+..+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 34556667788889999999999999988863 456788888899999999999999999987654 67788889999
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 015246 352 LCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~~ 371 (410)
+...|++++|...|+++++.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998865
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.83 E-value=1.9e-07 Score=65.62 Aligned_cols=98 Identities=15% Similarity=0.208 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455556666666666666666666665542 2244555556666666666666666666655443 3445555555566
Q ss_pred HhhcCchHHHHHHHHHHHhC
Q 015246 111 LCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~ 130 (410)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666655544
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=1.5e-07 Score=67.07 Aligned_cols=97 Identities=10% Similarity=0.078 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|++++|...+++..+.. +.+..++..+..++...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3444445555555555555555555554432 1234444444555555555555555555544432 2334444444444
Q ss_pred HhhcCchHHHHHHHHHHHh
Q 015246 111 LCKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~ 129 (410)
+...|++++|...+++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554444
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.82 E-value=1.1e-07 Score=73.62 Aligned_cols=133 Identities=11% Similarity=-0.075 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC--
Q 015246 171 AITYTTIMKCCFRNRKYKLGLEILSAMKRK----GY-TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-- 239 (410)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-- 239 (410)
...+..+...+...|++++|...+++..+. +. +.....+..+...+...|++++|...+++..+. +..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 334444444444444444444444444331 00 111223444444555555555555555544432 0000
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQG---FECD--KYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
....+..+...+...|++++|...+++..+.. ..+. ..++..+...+...|++++|...+++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 12234444445555555555555555543210 0111 1223444555555555555555555444
No 144
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.81 E-value=1.2e-07 Score=67.28 Aligned_cols=118 Identities=11% Similarity=0.079 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|+++.|...+++..... +.+...+..+..++...|++++|.+.++...... +.+...+..+..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3455555566666666666666666665542 2244555555666666666666666666655443 3344555555555
Q ss_pred HhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 015246 111 LCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR 151 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 151 (410)
+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 556666666666665555442 1234444444444444443
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.81 E-value=3.7e-07 Score=66.40 Aligned_cols=97 Identities=6% Similarity=-0.100 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 251 (410)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (410)
..+..+...+.+.|++++|+..|+++.... |.+...|..+..++...|++++|...|++..+..+ .++..+..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHH
Confidence 344455555556666666666666665554 44555555556666666666666666666655422 2445555555566
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 015246 252 CKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~ 270 (410)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666665554
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.81 E-value=9.6e-08 Score=80.20 Aligned_cols=84 Identities=10% Similarity=-0.137 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
..+..+..++.+.|++++|+..++++... +...|..+..++...|++++|+..|+++++.. +.+...+..+..++.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555544332 33444555555555555555555555555442 334444555555555
Q ss_pred hcCCHHHH
Q 015246 389 HSGCRREA 396 (410)
Q Consensus 389 ~~g~~~~a 396 (410)
+.|+.++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555555
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.79 E-value=5.1e-08 Score=68.91 Aligned_cols=95 Identities=15% Similarity=-0.018 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHH
Q 015246 276 KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNL 352 (410)
Q Consensus 276 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 352 (410)
...+......+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++.... +...|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4456677777888888888888888887753 445677777888888888888888888876654 556777777888
Q ss_pred HhcCChhhHHHHHHHHHHc
Q 015246 353 CKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 353 ~~~~~~~~A~~~~~~~~~~ 371 (410)
...|++++|+..|+++++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888887754
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.79 E-value=4.2e-07 Score=63.75 Aligned_cols=91 Identities=15% Similarity=0.243 Sum_probs=34.5
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEG 255 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 255 (410)
.+...+...|++++|.+.++++.+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+..++...|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc
Confidence 33333334444444444444433332 2223333333334444444444444444433321 112333333333444444
Q ss_pred CHHHHHHHHHHHH
Q 015246 256 KLEAAYLLLDEME 268 (410)
Q Consensus 256 ~~~~a~~~~~~~~ 268 (410)
++++|...++++.
T Consensus 92 ~~~~A~~~~~~~~ 104 (125)
T 1na0_A 92 DYDEAIEYYQKAL 104 (125)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4444444444433
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.79 E-value=3e-08 Score=72.25 Aligned_cols=97 Identities=12% Similarity=-0.025 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|++++|...|+....... .+...+..+..++...|++++|.+.|++....+ +.+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 34455555555666666666666666555432 245555555556666666666666666655543 3444555555555
Q ss_pred HhhcCchHHHHHHHHHHHh
Q 015246 111 LCKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~ 129 (410)
+...|++++|...|++..+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666655554
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.79 E-value=6.1e-08 Score=72.16 Aligned_cols=97 Identities=10% Similarity=-0.064 Sum_probs=83.8
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 351 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 351 (410)
+...+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|+..+++.... +...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888889999999999999999998863 446788889999999999999999999988765 66788889999
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 015246 352 LCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~~~ 372 (410)
+...|++++|+..|+++++..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999998763
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.79 E-value=6.2e-06 Score=67.90 Aligned_cols=172 Identities=8% Similarity=-0.022 Sum_probs=95.4
Q ss_pred HhcCCHH-HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc----------hhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 015246 147 CKAGRLR-TARWILKELGDSGHAPNAITYTTIMKCCFRNRK----------YKLGLEILSAMKRKGYTFDGFGYCTVIAA 215 (410)
Q Consensus 147 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 215 (410)
.+.|.++ +|+..++.+...++ -+...|+.--.+....+. +++++.+++.+...+ |-+..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455554 67888877776542 244445544333333332 456666777666654 5556666666666
Q ss_pred HHHcC--CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc---
Q 015246 216 FVKIG--RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK-LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKA--- 289 (410)
Q Consensus 216 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 289 (410)
+...+ ++++++.+++.+.+..+. +...|+.-..++...|. ++++++.+..+.+.++ -|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhc
Confidence 66666 367777777777765332 55556555555556666 4667777777766542 2555555554444433
Q ss_pred -----------CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 015246 290 -----------GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK 323 (410)
Q Consensus 290 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 323 (410)
+.+++++..+....... +-|...|+.+-..+.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGA 239 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHS
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 23455555555555542 3344555444443333
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.79 E-value=3.8e-07 Score=64.58 Aligned_cols=90 Identities=11% Similarity=0.086 Sum_probs=33.9
Q ss_pred HHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 015246 177 IMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK 256 (410)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 256 (410)
+...+...|++++|...+++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+..++...|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 3333334444444444444433332 2223333333333444444444444444433321 1123333333333444444
Q ss_pred HHHHHHHHHHHH
Q 015246 257 LEAAYLLLDEME 268 (410)
Q Consensus 257 ~~~a~~~~~~~~ 268 (410)
+++|...+++..
T Consensus 96 ~~~A~~~~~~~~ 107 (131)
T 2vyi_A 96 HVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.79 E-value=1.6e-05 Score=65.52 Aligned_cols=236 Identities=8% Similarity=-0.077 Sum_probs=146.7
Q ss_pred hcCChh-hHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC----------hhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 015246 43 RNSLLS-CSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK----------PDEANRVFQDMICGDLTPCTATFNIMLNGL 111 (410)
Q Consensus 43 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (410)
+.|.++ +|+++++.+...++. +..+|+.--.++...+. +++++.+++.+...+ +-+..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 445544 678888887775322 33444443333333222 567778888877665 66777777776666
Q ss_pred hhcC--chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc----
Q 015246 112 CKNR--YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR-LRTARWILKELGDSGHAPNAITYTTIMKCCFRN---- 184 (410)
Q Consensus 112 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 184 (410)
...+ .+++++.+++.+.+.... |..+|+.-.-++...|. ++++++.++.+.+..+ -|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcc
Confidence 6666 377888888888776433 67777776666677776 4778888887777543 3666666655554443
Q ss_pred ----------cchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCh-h
Q 015246 185 ----------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI-----------GRLKEATDYMEQMVTDGVQLDI-V 242 (410)
Q Consensus 185 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~-~ 242 (410)
+.++++++.+....... |-|...|+-+-..+.+. +.++++++.++++.+. .|+. .
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPENKW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Ccccch
Confidence 45778888888888775 55666665444444443 3578888888888885 3443 2
Q ss_pred hHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 015246 243 SYNTLIN---LYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGL 286 (410)
Q Consensus 243 ~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 286 (410)
.+..++. .....+..+++...+.++.+.. +....-|..+...+
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence 2222221 2224567788888999888763 22334454444433
No 154
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.77 E-value=4.2e-08 Score=68.70 Aligned_cols=95 Identities=11% Similarity=-0.105 Sum_probs=58.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhc
Q 015246 314 YNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHS 390 (410)
Q Consensus 314 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 390 (410)
+..+...+.+.|++++|...+++.... +...|..+..++...|++++|+..|+++++.+ +.+...+..+..++...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 344455566666666666666665543 45556666666667777777777777766653 34556666666677777
Q ss_pred CCHHHHHHHHHHHHHccCC
Q 015246 391 GCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 391 g~~~~a~~~~~~~~~~~~~ 409 (410)
|++++|...++++.+.+|+
T Consensus 99 g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCcC
Confidence 7777777777776665554
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.76 E-value=8.2e-08 Score=66.04 Aligned_cols=98 Identities=18% Similarity=0.096 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--cHhhHHHHHH
Q 015246 311 LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRI--LKSAQKAVVD 385 (410)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 385 (410)
...+..+...+...|++++|...+++.... +...+..+..++...|++++|...++++++.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 345555666666677777777766665543 45566777777777888888888888877653 34 5677777777
Q ss_pred HHhhc-CCHHHHHHHHHHHHHccCC
Q 015246 386 GLRHS-GCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 386 ~~~~~-g~~~~a~~~~~~~~~~~~~ 409 (410)
++... |++++|.+.++++....++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 88888 8888888888888777665
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=1.8e-07 Score=64.92 Aligned_cols=108 Identities=16% Similarity=-0.006 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN 351 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~ 351 (410)
....+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++.... +...+..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34567777888888889999988888888753 446777788888888888888888888877654 56677778888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHH
Q 015246 352 LCKAKRLPSASKLLLSCLKSGVRILKSAQKAVV 384 (410)
Q Consensus 352 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 384 (410)
+...|++++|...+++..+.+ +.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 888888888888888888653 33444444443
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=1.6e-07 Score=67.34 Aligned_cols=97 Identities=7% Similarity=-0.204 Sum_probs=80.9
Q ss_pred CchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHH
Q 015246 274 CDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVH 350 (410)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~ 350 (410)
.+...+..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...+++.... ++..+..+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 456778888888999999999999999988763 445778888888999999999999998887654 5677888888
Q ss_pred HHHhcCChhhHHHHHHHHHHc
Q 015246 351 NLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 351 ~~~~~~~~~~A~~~~~~~~~~ 371 (410)
++...|++++|...|+++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 899999999999999988865
No 158
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=5.4e-07 Score=63.54 Aligned_cols=96 Identities=15% Similarity=0.037 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 111 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (410)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.++.+ +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344555555556666666666666655542 2244555555555666666666666665555543 33455555555555
Q ss_pred hhcCchHHHHHHHHHHHh
Q 015246 112 CKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~ 129 (410)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555666666555555554
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.67 E-value=4.8e-08 Score=75.32 Aligned_cols=130 Identities=12% Similarity=-0.031 Sum_probs=70.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC----------------hhHHHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 67 WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC----------------TATFNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
..+..+...+...|++++|.+.|++..... +.+ ...+..+..++...|++++|...+++..+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344445555555555555555555555432 111 255666666677777777777777776665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH-HHHHHHHH
Q 015246 131 GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL-EILSAMKR 199 (410)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 199 (410)
. +.+...+..+..++...|++++|...|++...... .+...+..+..++...++..++. ..+..+..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 23556666667777777777777777777665432 24555666666666666665555 44444443
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.66 E-value=1.4e-06 Score=60.24 Aligned_cols=97 Identities=12% Similarity=0.014 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGL 111 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (410)
..+..+...+...|++++|...++...... +.+...+..+..++...|++++|...+++..... +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344445555555555555555555555432 1234445555555555555555555555554433 33344445555555
Q ss_pred hhcCchHHHHHHHHHHHhC
Q 015246 112 CKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~ 130 (410)
...|++++|...+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 5555555555555555443
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.66 E-value=9e-07 Score=62.43 Aligned_cols=57 Identities=9% Similarity=0.149 Sum_probs=25.3
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015246 176 TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (410)
.+...+.+.|++++|+..|++.++.. |.+...|..+..+|...|++++|+..+++.+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444444444444444444432 3333344444444444444444444444443
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.65 E-value=7.4e-07 Score=62.87 Aligned_cols=102 Identities=16% Similarity=0.095 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---C-------chhHHH
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D-------SFTYSS 347 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~~~ 347 (410)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..+++.... + ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34445555556666666666666655542 233455555666666666666666666555432 1 124566
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKA 382 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 382 (410)
++.++...|++++|++.|++.++. .|++.+...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 777788888888888888888764 456554433
No 163
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=4e-07 Score=65.81 Aligned_cols=99 Identities=14% Similarity=-0.031 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
+...+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...+++..+.. +.++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 34455566677788888888888888887764 3366677777888888888888888888887763 445667777888
Q ss_pred HHHccCChHHHHHHHHhhccC
Q 015246 320 RLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~ 340 (410)
++...|++++|...|+.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888776554
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=5.6e-07 Score=61.73 Aligned_cols=97 Identities=12% Similarity=0.031 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC--ChhHHHHHHH
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTP--CTATFNIMLN 109 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 109 (410)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.|++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 344445555555555555555555555432 1234445555555555555555555555555443 22 3445555555
Q ss_pred HHhhc-CchHHHHHHHHHHHhC
Q 015246 110 GLCKN-RYTDNALRMFRGLQKH 130 (410)
Q Consensus 110 ~~~~~-~~~~~a~~~~~~~~~~ 130 (410)
++... |++++|.+.++.....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 55555 5555555555555443
No 165
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=2.8e-06 Score=74.23 Aligned_cols=193 Identities=7% Similarity=0.010 Sum_probs=106.8
Q ss_pred HHHHHhccchhHHHHHHHHHHHcCCCCCh----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC
Q 015246 178 MKCCFRNRKYKLGLEILSAMKRKGYTFDG----------------FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ-LD 240 (410)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 240 (410)
...+.+.|++++|++.+..+.+....... ..+..+...|...|++++|.+.+..+...... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45567778888888888888776422111 12556677777777777777777766543111 11
Q ss_pred h----hhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-chHHHHHHHHHHHhcCChhHHHHHHHHHHhc--CC--
Q 015246 241 I----VSYNTLINLYCKEGKLEAAYLLLDEMEK----QGFEC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--GF-- 307 (410)
Q Consensus 241 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-- 307 (410)
. .+.+.+...+...|+++.|..++..... .+..+ ...++..+...+...|++++|..+++.+... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1122222333445667777777666542 12111 2345566667777777777777777665432 11
Q ss_pred -CCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-----C-----chhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 308 -DSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-----D-----SFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 308 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
+....++..++..|...|++++|..++++.... + ...+..++..+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111345555666666666666666666654432 1 12334444445556666666666666543
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.63 E-value=5e-07 Score=69.54 Aligned_cols=85 Identities=8% Similarity=-0.099 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
..+..+..++...|++++|...+++.... +...+..+..++...|++++|+..|+++++.. +.+...+..+..++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 44555555566666666666666655433 44455666666666666666666666666543 334555555555555
Q ss_pred hcCCHHHHH
Q 015246 389 HSGCRREAK 397 (410)
Q Consensus 389 ~~g~~~~a~ 397 (410)
..|+.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555555554
No 167
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.63 E-value=2.4e-07 Score=66.75 Aligned_cols=64 Identities=13% Similarity=-0.062 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc-------CCCCcHhhH----HHHHHHHhhcCCHHHHHHHHHHHHHccC
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKS-------GVRILKSAQ----KAVVDGLRHSGCRREAKKIQSKIRMAKI 408 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 408 (410)
.|..+..++...|++++|+..++++++. + +.+...| ...+.++...|++++|+..|++..+..|
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6777777777777777777777777764 3 3345667 7777888888888888888888776554
No 168
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=7.7e-07 Score=64.66 Aligned_cols=110 Identities=19% Similarity=-0.008 Sum_probs=84.7
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHH
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSS 347 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 347 (410)
+...+..+...+...|++++|...+++..+. .|+ ...+..+..++...|++++|...+++.... +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4567778888888999999999999998875 454 577788888888899999999888877654 5667788
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 387 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (410)
+..++...|++++|...|+++++.. +.+...+..+....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 8888888999999999999888763 33455554444443
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.61 E-value=5.8e-07 Score=63.63 Aligned_cols=92 Identities=9% Similarity=-0.018 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHhhccC---C---chhHHHHH
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFDSNL---EAYNCIVDRLGKDGKIDHAINVFESMEVK---D---SFTYSSMV 349 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~ 349 (410)
+..+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...++++... + +..+..++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 4456677888899999999999888753 2233 47777888888899999999988887654 3 45577788
Q ss_pred HHHHhcCChhhHHHHHHHHHHc
Q 015246 350 HNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.++...|++++|...|+++++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888899999999999988876
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=2.2e-06 Score=62.22 Aligned_cols=98 Identities=13% Similarity=0.021 Sum_probs=74.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc----hHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD----KYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYN 315 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 315 (410)
+...+..+...+...|++++|...|++..+.. |+ ...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 45667777778888888888888888887763 34 5667777778888888888888888877752 34567777
Q ss_pred HHHHHHHccCChHHHHHHHHhhccC
Q 015246 316 CIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
.+..++...|++++|...|++....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7888888888888888888876554
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=4e-06 Score=73.24 Aligned_cols=199 Identities=9% Similarity=-0.062 Sum_probs=144.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCc----------------HHHHHHHHHHHHhccchhHHHHHHHHHHHcCC-CC
Q 015246 142 LIKGLCKAGRLRTARWILKELGDSGHAPN----------------AITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-TF 204 (410)
Q Consensus 142 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 204 (410)
-.+.+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+.+..+.+... .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 35677889999999999999988644321 12467788999999999999999998875411 11
Q ss_pred Chh----hHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-
Q 015246 205 DGF----GYCTVIAAFVKIGRLKEATDYMEQMVTD----GVQL-DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GF- 272 (410)
Q Consensus 205 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~- 272 (410)
+.. +.+.+...+...|+++.+..+++..... +..+ -..++..+...+...|++++|..+++++... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 221 2223333444668999999999887653 2222 2456778899999999999999999988643 11
Q ss_pred -CC-chHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 273 -EC-DKYTHTILIDGLCKAGNIKGARLHLEYMNKI----GFDSN--LEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 273 -~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
.+ ....+..+++.|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+....
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 2457888899999999999999999987642 11111 345666777888999999999998877655
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.56 E-value=1.1e-06 Score=62.10 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---C-------chhHHH
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---D-------SFTYSS 347 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~~~ 347 (410)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++.... + ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44455555556666666666666655542 334455555666666666666666666655433 2 456677
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGL 387 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 387 (410)
++.++...|++++|.+.++++++. .|+......+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 778888888888888888888865 34555555444433
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.56 E-value=2.1e-06 Score=61.42 Aligned_cols=97 Identities=7% Similarity=-0.017 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHH
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLN 109 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (410)
+...+..+...+...|++++|...|+....... .+...+..+..++...|++++|...++...... +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 344455555555555555555555555554321 234445555555555555555555555554433 333444444555
Q ss_pred HHhhcCchHHHHHHHHHHH
Q 015246 110 GLCKNRYTDNALRMFRGLQ 128 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~ 128 (410)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 5555555555555554444
No 174
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.54 E-value=1.9e-06 Score=60.90 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----hhhHHHH
Q 015246 174 YTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQ--LD----IVSYNTL 247 (410)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 247 (410)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++........ ++ ...+..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333444444444444444444444432 223334444444444444444444444444432110 00 2333444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 015246 248 INLYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 248 ~~~~~~~~~~~~a~~~~~~~~~ 269 (410)
..++...|++++|...|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.53 E-value=1e-06 Score=65.10 Aligned_cols=128 Identities=16% Similarity=0.058 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHccCChHHHHHHHHhhccC---------Cchh
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMNKIGFD-SN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSFT 344 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~ 344 (410)
+..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++.... ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444445555555544444331000 00 123444555555556666655555554332 1234
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc----CCCC-cHhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 015246 345 YSSMVHNLCKAKRLPSASKLLLSCLKS----GVRI-LKSAQKAVVDGLRHSGCRREAKKIQSKIRMA 406 (410)
Q Consensus 345 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 406 (410)
+..+..++...|++++|...+++.++. +.++ ....+..+...+...|++++|.+.+++..+.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556666777777777777777766533 1111 2345666777788888888888888776653
No 176
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.53 E-value=3.8e-06 Score=62.31 Aligned_cols=97 Identities=8% Similarity=0.021 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 015246 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLY 251 (410)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 251 (410)
..+..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|+..+++..+.. +.+...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 344444445555555555555555555443 3344444455555555555555555555555442 12344445555555
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 015246 252 CKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~ 270 (410)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.52 E-value=4.6e-07 Score=79.86 Aligned_cols=119 Identities=12% Similarity=0.110 Sum_probs=91.7
Q ss_pred hhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 4 DAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 4 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
..+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+... .+..++..+..++...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 45678899999999999998875 45678888899999999999999999999888642 36778888888999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHH--HhhcCchHHHHHHHH
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNG--LCKNRYTDNALRMFR 125 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 125 (410)
+|.+.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999888764 4445556656555 778888888988887
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.51 E-value=9.2e-07 Score=65.51 Aligned_cols=98 Identities=12% Similarity=-0.046 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------C---------CCCCHHHHHHHHHHHHccCChHHHHHHHHhh
Q 015246 275 DKYTHTILIDGLCKAGNIKGARLHLEYMNKI--------G---------FDSNLEAYNCIVDRLGKDGKIDHAINVFESM 337 (410)
Q Consensus 275 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 337 (410)
....+......+.+.|++++|...|.+.++. . -+.+...+..+..+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888899999999999999998764 0 0112356777788888888888888888877
Q ss_pred ccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 338 EVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 338 ~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
... ++..|..++.++...|++++|...|+++++..
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 654 56678888888888888888888888888663
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.49 E-value=1.8e-07 Score=82.09 Aligned_cols=158 Identities=8% Similarity=-0.093 Sum_probs=71.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 015246 10 VSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVF 89 (410)
Q Consensus 10 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 89 (410)
+++++|++.|+...... +.....+..+...+.+.|++++|+..|++..+....... + . .+...+ .
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~--~----------~-~~~~~~-~ 312 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG--L----------S-EKESKA-S 312 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--C----------C-HHHHHH-H
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc--C----------C-hHHHHH-H
Confidence 34445554444333321 123446666677777777777777777777664211110 0 0 000000 0
Q ss_pred HHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 015246 90 QDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 169 (410)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (410)
. +....+|..+..++.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|...|++..+... .
T Consensus 313 ~-------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~ 383 (457)
T 1kt0_A 313 E-------SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-Q 383 (457)
T ss_dssp H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-C
Confidence 0 0002344445555555555555555555554432 12444455555555555555555555555544321 1
Q ss_pred cHHHHHHHHHHHHhccchhHHH
Q 015246 170 NAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
+...+..+..++.+.++++++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444444444555544443
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.48 E-value=1.9e-06 Score=60.14 Aligned_cols=92 Identities=11% Similarity=-0.067 Sum_probs=49.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcC
Q 015246 36 SLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNR 115 (410)
Q Consensus 36 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (410)
.+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...|++.++.. +.+...+..+..++...|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344455555555555555555555422 244555555555555555555555555555543 334455555555555555
Q ss_pred chHHHHHHHHHHHh
Q 015246 116 YTDNALRMFRGLQK 129 (410)
Q Consensus 116 ~~~~a~~~~~~~~~ 129 (410)
++++|...+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555554
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.47 E-value=1.3e-06 Score=64.51 Aligned_cols=93 Identities=9% Similarity=-0.054 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHhhccC---------Cch
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKI----GFDS-NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---------DSF 343 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~ 343 (410)
.+..+...+...|++++|...+++..+. +.++ ....+..+...+...|++++|...+++.... ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444455555555555555555554431 0000 1234445555666666666666666554432 133
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
.+..+...+...|++++|.+.+++.++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456667777778888888888877664
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=6.8e-06 Score=57.96 Aligned_cols=91 Identities=12% Similarity=0.050 Sum_probs=43.6
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHH
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPPDV---WSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPC---TATFNIMLNGL 111 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 111 (410)
...+...|++++|...|+.+.+.... +. ..+..+..++...|++++|...|+.+.... +.+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34444555555555555555443211 12 244444555555555555555555554432 222 33444455555
Q ss_pred hhcCchHHHHHHHHHHHhC
Q 015246 112 CKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~ 130 (410)
...|++++|...|+.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555543
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.43 E-value=6.8e-07 Score=62.07 Aligned_cols=84 Identities=17% Similarity=0.027 Sum_probs=66.6
Q ss_pred hcCChhHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHH
Q 015246 288 KAGNIKGARLHLEYMNKIG--FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSAS 362 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 362 (410)
..|++++|+..|++..+.+ -+.+...+..+..++...|++++|...|++.... ++..+..+..++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4688899999999998853 1334677888889999999999999999988755 6678888899999999999999
Q ss_pred HHHHHHHHc
Q 015246 363 KLLLSCLKS 371 (410)
Q Consensus 363 ~~~~~~~~~ 371 (410)
..++++++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998866
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.41 E-value=6.1e-07 Score=62.31 Aligned_cols=87 Identities=9% Similarity=-0.034 Sum_probs=58.2
Q ss_pred hcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 015246 8 QFVSFDAGYTILNRMREAG--ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEA 85 (410)
Q Consensus 8 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 85 (410)
..|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+... .+..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 3577778888888877653 123455677777777778888888888877777643 2566677777777777788877
Q ss_pred HHHHHHHhcC
Q 015246 86 NRVFQDMICG 95 (410)
Q Consensus 86 ~~~~~~~~~~ 95 (410)
.+.|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776654
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=4.5e-07 Score=79.91 Aligned_cols=119 Identities=13% Similarity=-0.028 Sum_probs=80.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 015246 247 LINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGK 326 (410)
Q Consensus 247 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 326 (410)
+...+.+.|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3445667788888888888887763 2356677778888888888888888888887753 3456677777777888888
Q ss_pred hHHHHHHHHhhccC---CchhHHHHHHH--HHhcCChhhHHHHHHH
Q 015246 327 IDHAINVFESMEVK---DSFTYSSMVHN--LCKAKRLPSASKLLLS 367 (410)
Q Consensus 327 ~~~A~~~~~~~~~~---~~~~~~~l~~~--~~~~~~~~~A~~~~~~ 367 (410)
+++|.+.+++.... +...+..+..+ +.+.|++++|++.+++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 88888877776543 44555555555 6677777777777763
No 186
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.40 E-value=3.2e-06 Score=74.19 Aligned_cols=121 Identities=12% Similarity=-0.079 Sum_probs=68.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc--------------hHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECD--------------KYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
...+..+...+.+.|++++|...|++..+...... ...|..+..++.+.|++++|+..++++++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 34555666666677777777777776665421111 3455556666666666666666666666542
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHH
Q 015246 307 FDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSAS 362 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 362 (410)
+.+...+..+..+|...|++++|...|+++... +...+..+..++...++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666666666666655544 4445555555555555555444
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.40 E-value=5.8e-07 Score=75.48 Aligned_cols=149 Identities=15% Similarity=0.008 Sum_probs=64.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 015246 241 IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDR 320 (410)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 320 (410)
...+..+...+.+.|++++|...|.+.... .|+... +...++..++...+ . ...+..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 455666777778888888888888887765 333321 11112222221111 0 1245556666
Q ss_pred HHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHH-HhhcCCHHHH
Q 015246 321 LGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG-LRHSGCRREA 396 (410)
Q Consensus 321 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 396 (410)
|.+.|++++|+..+++.... +...|..+..++...|++++|+..|+++++.. +.+...+..+... ....+..+.+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665443 44556666666666677777776666666432 2233344444433 2334555666
Q ss_pred HHHHHHHHHccCC
Q 015246 397 KKIQSKIRMAKIS 409 (410)
Q Consensus 397 ~~~~~~~~~~~~~ 409 (410)
...|.++....+.
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 6666666555443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.38 E-value=4.1e-06 Score=71.11 Aligned_cols=89 Identities=11% Similarity=-0.054 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHH
Q 015246 310 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDG 386 (410)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 386 (410)
+...|..+..+|.+.|++++|+..++++... +...+..+..++...|++++|+..|+++++.. +.+...+..+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3566777888888888888888888887765 56678888888999999999999999988764 4466777777777
Q ss_pred HhhcCCHHHHHHH
Q 015246 387 LRHSGCRREAKKI 399 (410)
Q Consensus 387 ~~~~g~~~~a~~~ 399 (410)
+...++.+++.+.
T Consensus 351 ~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 351 KQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776543
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.30 E-value=5.8e-05 Score=67.86 Aligned_cols=169 Identities=9% Similarity=-0.063 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC--
Q 015246 223 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGK----------LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-- 290 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 290 (410)
++|.+.++.+...++. +...|+.--.++...|+ ++++++.++.+.+...+ +...|..-..++.+.+
T Consensus 46 eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 4555555555554222 33444444444444444 66677777777665432 5556666666666666
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHhhccC---CchhHHHHHHHHHhc-----------
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG-KIDHAINVFESMEVK---DSFTYSSMVHNLCKA----------- 355 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~----------- 355 (410)
++++++..++++.+.. +-+...|+.-..++.+.| .++++++.++++... +..+|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 5577777777777653 345666766666666666 677777777777665 555666666555542
Q ss_pred ---CChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHH
Q 015246 356 ---KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRRE 395 (410)
Q Consensus 356 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 395 (410)
+.++++++.+++++... |-+...|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45688999999988774 5577888888888877776443
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.28 E-value=1.1e-05 Score=68.40 Aligned_cols=137 Identities=7% Similarity=-0.117 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHh
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLC 112 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (410)
.+..+...+.+.|++++|++.|++..+.- +... .... .+...... +.+..+|..+..++.
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~-------~~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAE-------DADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSC-------HHHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccC-------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence 45666777778888888888887776520 0000 0000 00000010 223344555555555
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|++..+... .+...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555442 12444555555555555555555555555554321 13444444444544445444443
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.28 E-value=2.6e-05 Score=57.56 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 015246 207 FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 207 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
..+..+..+|.+.|++++|+..++..++.. +.+...|..+..++...|++++|...|++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 345555555556666666666665555542 224455555555556666666666666555554
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.27 E-value=2.5e-05 Score=55.76 Aligned_cols=110 Identities=12% Similarity=-0.064 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHH
Q 015246 255 GKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGK----DGKIDHA 330 (410)
Q Consensus 255 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 330 (410)
+++++|...|++..+.+ .|+.. +...|...+.+++|..+|++..+.| +......+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35666777777776665 22222 5555555566666777777666653 44555566666665 5666667
Q ss_pred HHHHHhhccC-CchhHHHHHHHHHh----cCChhhHHHHHHHHHHcC
Q 015246 331 INVFESMEVK-DSFTYSSMVHNLCK----AKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 331 ~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~ 372 (410)
...|++..+. ++..+..+...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 6666666555 56666666666666 666666666666666655
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.26 E-value=3.8e-06 Score=73.66 Aligned_cols=94 Identities=10% Similarity=-0.012 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC-----------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC-C
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS-----GV-R 374 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~ 374 (410)
.+++.+..+|...|++++|..++++.... ...+++.|+..|...|++++|+.+++++++. |. .
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555555555555555555543322 1223555555555566666555555554421 21 1
Q ss_pred Cc-HhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 375 IL-KSAQKAVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 375 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
|+ ..+...+..++...|++++|..++.++++
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22333444455556666666666666654
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.25 E-value=0.00015 Score=65.23 Aligned_cols=172 Identities=9% Similarity=-0.061 Sum_probs=121.5
Q ss_pred CChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC----------hhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc
Q 015246 45 SLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK----------PDEANRVFQDMICGDLTPCTATFNIMLNGLCKN 114 (410)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 114 (410)
...++|++.++.+...+.. +..+|+.--.++...|+ ++++.+.++.+.+.. +-+..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3446778888888876432 45566666666666666 788888888888776 66778888877788888
Q ss_pred C--chHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc-------
Q 015246 115 R--YTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCFRN------- 184 (410)
Q Consensus 115 ~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 184 (410)
+ +++++++.++++.+.... +..+|+....++.+.| .++++++.++++.+..+ -+...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccc
Confidence 8 668888888888887443 7778877777777777 78888888888877543 3666777666655542
Q ss_pred -------cchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCC
Q 015246 185 -------RKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGR 221 (410)
Q Consensus 185 -------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (410)
+.++++++.+..+.... |.+...|......+.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 45677777777777664 5566666665555555554
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.25 E-value=6.9e-06 Score=68.92 Aligned_cols=146 Identities=15% Similarity=0.038 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 015246 206 GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDG 285 (410)
Q Consensus 206 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 285 (410)
...+..+...+.+.|++++|...|++.... .|+.. .+...++.+++...+ ....+..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 345667777888899999999999998875 23322 123334444443322 12367888889
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHH-HHhcCChhhH
Q 015246 286 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHN-LCKAKRLPSA 361 (410)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~-~~~~~~~~~A 361 (410)
+.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|+++... +...+..+... ....+..+.+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998863 446788999999999999999999999998766 45556666555 3345667888
Q ss_pred HHHHHHHHHc
Q 015246 362 SKLLLSCLKS 371 (410)
Q Consensus 362 ~~~~~~~~~~ 371 (410)
...|.++...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8899988754
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.15 E-value=6.3e-05 Score=53.67 Aligned_cols=112 Identities=9% Similarity=-0.056 Sum_probs=60.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhH
Q 015246 9 FVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ----LGKPDE 84 (410)
Q Consensus 9 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 84 (410)
.+++++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+.| +......|...|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 345666666666666655 22222 4455555555566666666665542 44555555555555 555666
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhh----cCchHHHHHHHHHHHhCC
Q 015246 85 ANRVFQDMICGDLTPCTATFNIMLNGLCK----NRYTDNALRMFRGLQKHG 131 (410)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 131 (410)
|.++|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666555443 23444445555554 455555555555555543
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.14 E-value=4.1e-05 Score=55.18 Aligned_cols=63 Identities=16% Similarity=0.039 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C-----C-----hHhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 015246 32 VTYNSLIAGATRNSLLSCSLDLLDEMLEMGIP-P-----D-----VWSYNSLMHCLFQLGKPDEANRVFQDMIC 94 (410)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 94 (410)
..+......+.+.|++++|+..|++..+.... | + ...|..+..++.+.|++++|+..+++.+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555666677788888888888887775322 0 1 11455555555555555555555555443
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.3e-06 Score=59.77 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc------HhhHHH
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL------KSAQKA 382 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~ 382 (410)
..+..+...+...|++++|...|++.... ++..+..+..++...|++++|+..++++++.. +.+ ...+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence 34444445555555555555555544332 34445555555555666666666666555432 112 334444
Q ss_pred HHHHHhhcCCHHHHHH
Q 015246 383 VVDGLRHSGCRREAKK 398 (410)
Q Consensus 383 l~~~~~~~g~~~~a~~ 398 (410)
+..++...|+.++|..
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 4444444444444433
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.08 E-value=8.9e-06 Score=56.08 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
+.+...+++..+.. +.+...+..+...+...|++++|...+++.... +...|..+..++...|++++|...|++++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45778888888753 456788888999999999999999999987755 56678889999999999999999999988
Q ss_pred Hc
Q 015246 370 KS 371 (410)
Q Consensus 370 ~~ 371 (410)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.06 E-value=3.2e-05 Score=67.81 Aligned_cols=97 Identities=10% Similarity=0.008 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC
Q 015246 208 GYCTVIAAFVKIGRLKEATDYMEQMVTD-----GV--QLDIVSYNTLINLYCKEGKLEAAYLLLDEMEK-----QGF-EC 274 (410)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~ 274 (410)
+++.+..+|...|++++|..++++.++. |. +....+++.+...|...|++++|..++++..+ .|. .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444445555544444444321 11 11123344444455555555555555444432 111 11
Q ss_pred c-hHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 275 D-KYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 275 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
+ ..+...+..++...+.+++|...+.++.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12233344444455555555555555543
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.05 E-value=5.8e-06 Score=59.43 Aligned_cols=68 Identities=12% Similarity=-0.039 Sum_probs=36.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChH----------HHHHHHHhhccC---CchhHHHHHHHHH
Q 015246 287 CKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID----------HAINVFESMEVK---DSFTYSSMVHNLC 353 (410)
Q Consensus 287 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~---~~~~~~~l~~~~~ 353 (410)
.+.+.+++|...++...+.. +.+...|..+..++...++++ +|+..|++.... +..+|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34455666777777666653 345666666666666655443 444444444333 3334444444444
Q ss_pred hc
Q 015246 354 KA 355 (410)
Q Consensus 354 ~~ 355 (410)
..
T Consensus 92 ~l 93 (158)
T 1zu2_A 92 SF 93 (158)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.96 E-value=5.3e-05 Score=49.35 Aligned_cols=78 Identities=14% Similarity=0.143 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHh
Q 015246 312 EAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLR 388 (410)
Q Consensus 312 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 388 (410)
..+..+...+...|++++|...+++.... +...+..+..++...|++++|...++++++.. +.+...+..+..++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555555566666666666554432 44456666666677777777777777766553 334555555555554
Q ss_pred hc
Q 015246 389 HS 390 (410)
Q Consensus 389 ~~ 390 (410)
..
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=8.8e-05 Score=50.93 Aligned_cols=79 Identities=16% Similarity=0.042 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 84 EANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
.|.+.|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555554443 3444555555555555555555555555555442 2234455555555555566665555555554
Q ss_pred h
Q 015246 164 D 164 (410)
Q Consensus 164 ~ 164 (410)
.
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=6.1e-05 Score=51.24 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 30 DVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
+...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+++.+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455556666666666666666666666543 224555666666666666666666666666554
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.94 E-value=3.7e-05 Score=51.32 Aligned_cols=81 Identities=11% Similarity=0.029 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCcHhhHHHHH
Q 015246 309 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG-VRILKSAQKAVV 384 (410)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~ 384 (410)
.+...+..+..++...|++++|...|++.... ++..|..+..++...|++++|++.|++.++.. -.++......+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 45677888888888888888888888877654 56678888888888888888888888887542 123444444444
Q ss_pred HHHhh
Q 015246 385 DGLRH 389 (410)
Q Consensus 385 ~~~~~ 389 (410)
..+..
T Consensus 85 ~~l~~ 89 (100)
T 3ma5_A 85 DAKLK 89 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.90 E-value=5.2e-05 Score=54.49 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=58.9
Q ss_pred hhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh----------hHHHHHHHHHHcCCCCChHhHHHHHHH
Q 015246 6 YCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLS----------CSLDLLDEMLEMGIPPDVWSYNSLMHC 75 (410)
Q Consensus 6 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (410)
..+.+++++|++.++...+.. +.+...|..+..++...++++ +|+..|++..+.+.. +..+|..+..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 346677888888888888876 567778887888887776654 677777776665322 45566666666
Q ss_pred HHhcC-----------ChhHHHHHHHHHhcC
Q 015246 76 LFQLG-----------KPDEANRVFQDMICG 95 (410)
Q Consensus 76 ~~~~~-----------~~~~a~~~~~~~~~~ 95 (410)
|...| ++++|.+.|++.++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 66553 555555555555544
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.89 E-value=0.00014 Score=47.23 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHH
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNG 110 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (410)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.|++..... +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445555555666666666666666655542 1244455555555556666666666665555443 3334444444433
Q ss_pred H
Q 015246 111 L 111 (410)
Q Consensus 111 ~ 111 (410)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.70 E-value=5e-05 Score=50.49 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=30.4
Q ss_pred HHHHHccCChHHHHHHHHhhccC---Cch-hHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 318 VDRLGKDGKIDHAINVFESMEVK---DSF-TYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
...+...|++++|...++++... +.. .+..+..++...|++++|++.|+++++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33445555555555555554433 334 5555566666666666666666666654
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.67 E-value=0.00013 Score=62.95 Aligned_cols=60 Identities=10% Similarity=-0.092 Sum_probs=28.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc-----C-CCC-cHhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKS-----G-VRI-LKSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
+++.++.+|...|++++|+.+++++++. | -.| ...+++.++..|..+|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3444455555555555555555444321 1 011 1234455555555555555555555554
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.63 E-value=0.00039 Score=60.02 Aligned_cols=86 Identities=12% Similarity=0.016 Sum_probs=44.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHccCChHHHHHHHHhhccC-----------CchhH
Q 015246 284 DGLCKAGNIKGARLHLEYMNKI---GFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTY 345 (410)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~ 345 (410)
..+...|++++|...+++..+. -+.|+ ..+++.++.+|...|++++|..++++.... ...++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3344556666666666655532 01111 334555555666666666666555544322 12245
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHH
Q 015246 346 SSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 346 ~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
+.+...|...|++++|+.++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555555666666666666555554
No 211
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.59 E-value=0.00033 Score=46.37 Aligned_cols=63 Identities=14% Similarity=0.073 Sum_probs=54.9
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCcHh-hHHHHHHHHhhcCCHHHHHHHHHHHHHccCCC
Q 015246 347 SMVHNLCKAKRLPSASKLLLSCLKSGVRILKS-AQKAVVDGLRHSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 347 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
..+..+...|++++|+..++++++.. +.+.. .+..++.++...|++++|.+.|+++.+.++++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 35667889999999999999999874 55667 88999999999999999999999999888764
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.58 E-value=0.0018 Score=53.75 Aligned_cols=140 Identities=11% Similarity=-0.015 Sum_probs=65.7
Q ss_pred CCCChhhHHHHHHHHH--hcC---CHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHh---cC-Ch-hHH---HHHHHHH
Q 015246 237 VQLDIVSYNTLINLYC--KEG---KLEAAYLLLDEMEKQGFECD-KYTHTILIDGLCK---AG-NI-KGA---RLHLEYM 302 (410)
Q Consensus 237 ~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~-~~-~~a---~~~~~~~ 302 (410)
.+.+...|...+++.. ..+ +..+|..+|++..+. .|+ ...+..+..++.. .+ .. ... ...++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 4556777777776543 222 346778888888776 333 3344444444321 00 00 000 1111111
Q ss_pred Hh-cCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCC--chhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhh
Q 015246 303 NK-IGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKD--SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSA 379 (410)
Q Consensus 303 ~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 379 (410)
.. ...+.++..+..+...+...|++++|...++++...+ ...|..+...+.-.|++++|.+.|+++... .|...+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 11 0113344445555444445566666666666555442 222334444555556666666666555544 344444
Q ss_pred H
Q 015246 380 Q 380 (410)
Q Consensus 380 ~ 380 (410)
|
T Consensus 346 ~ 346 (372)
T 3ly7_A 346 L 346 (372)
T ss_dssp H
T ss_pred H
Confidence 4
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.50 E-value=0.00077 Score=43.91 Aligned_cols=65 Identities=14% Similarity=0.016 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHccCC---hHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 308 DSNLEAYNCIVDRLGKDGK---IDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 308 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
++++..+..+..++...++ .++|..++++.... ++.....+...+...|++++|+..|+++++.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4567777777777754444 68888888877655 55667777788888888888888888888664
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.46 E-value=0.0048 Score=51.18 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=34.6
Q ss_pred CcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015246 169 PNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMVT 234 (410)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 234 (410)
.+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344455554444444556666666666555553 4444444555555555666666666655555
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.42 E-value=0.001 Score=44.50 Aligned_cols=62 Identities=11% Similarity=-0.059 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHhhccC----------CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 310 NLEAYNCIVDRLGKDGKIDHAINVFESMEVK----------DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 310 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
+..-...+...+...|++..|...++..... ....+..+..++.+.|+++.|...++++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445556677777777777777777765432 2345667777777777777777777777755
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.40 E-value=0.00088 Score=47.61 Aligned_cols=79 Identities=13% Similarity=0.018 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHhhccCC-----chhHHHHHHHHHhcCChhhHHH
Q 015246 292 IKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDG---KIDHAINVFESMEVKD-----SFTYSSMVHNLCKAKRLPSASK 363 (410)
Q Consensus 292 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~ 363 (410)
...+.+.|.+..+.+ +++..+...+..++.+.+ +.++++.+++.....+ ...+..+..++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344555555555544 356666666777777766 4557777776665443 3345566666777777777777
Q ss_pred HHHHHHHc
Q 015246 364 LLLSCLKS 371 (410)
Q Consensus 364 ~~~~~~~~ 371 (410)
.++.+++.
T Consensus 93 y~~~lL~i 100 (152)
T 1pc2_A 93 YVRGLLQT 100 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777755
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.36 E-value=0.019 Score=54.49 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=114.3
Q ss_pred HHHHhcCCHHHHHH-HHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCH
Q 015246 144 KGLCKAGRLRTARW-ILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRL 222 (410)
Q Consensus 144 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (410)
......+++++|.+ ++..+ ++......++..+.+.|.++.|.++.+. +. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 33445777777766 44221 1122236666777778888877765531 11 112334567888
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 223 KEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYM 302 (410)
Q Consensus 223 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 302 (410)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ +..+...+...|+.+....+.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8888875433 3677888899999999999999988887753 334555555577776666555555
Q ss_pred HhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH----h
Q 015246 303 NKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK----S 378 (410)
Q Consensus 303 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~ 378 (410)
...| -+.....+|.+.|++++|.+++ .+.+++++|..+-+.. .|.. .
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~------------------~~~~~~~~A~~lA~~~-----~~~~~~i~~ 784 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLL------------------IKSQRFSEAAFLGSTY-----GLGDNEVND 784 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHH------------------HHTTCHHHHHHHHHHT-----TCCHHHHHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHH------------------HHcCChHHHHHHHHHh-----CCChHHHHH
Confidence 5433 1233445566677777776654 4566677777666553 2232 3
Q ss_pred hHHHHHHHHhhcCCHHHH
Q 015246 379 AQKAVVDGLRHSGCRREA 396 (410)
Q Consensus 379 ~~~~l~~~~~~~g~~~~a 396 (410)
....+...+...|+.+.|
T Consensus 785 ~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 785 IVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHhccchhHH
Confidence 444444445566654433
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.26 E-value=0.00068 Score=58.45 Aligned_cols=83 Identities=7% Similarity=-0.079 Sum_probs=55.5
Q ss_pred hcCChhHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHccCChHHHHHHHHhhccC-----------CchhHHHHH
Q 015246 288 KAGNIKGARLHLEYMNKI---GFDSN----LEAYNCIVDRLGKDGKIDHAINVFESMEVK-----------DSFTYSSMV 349 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~ 349 (410)
..|++++|..++++.++. -+.|+ ..+++.+..+|...|++++|..++++.... ...+++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346677777777765532 11122 355677777777788888877777765532 234577788
Q ss_pred HHHHhcCChhhHHHHHHHHHH
Q 015246 350 HNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~ 370 (410)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888887763
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.16 E-value=0.002 Score=55.66 Aligned_cols=86 Identities=8% Similarity=-0.103 Sum_probs=42.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC---CCCc----hHHHHHHHHHHHhcCChhHHHHHHHHHHhc-----C-CCCC-HHHHH
Q 015246 250 LYCKEGKLEAAYLLLDEMEKQG---FECD----KYTHTILIDGLCKAGNIKGARLHLEYMNKI-----G-FDSN-LEAYN 315 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~ 315 (410)
.+...|++++|..++++..+.. +.|+ ..+++.++.+|...|++++|+.++++++.. | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3444556666666665554321 1111 234555555566666666666666554421 1 1111 23445
Q ss_pred HHHHHHHccCChHHHHHHHH
Q 015246 316 CIVDRLGKDGKIDHAINVFE 335 (410)
Q Consensus 316 ~l~~~~~~~g~~~~A~~~~~ 335 (410)
.+...|...|++++|..+++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 55555666666666655554
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.10 E-value=0.0021 Score=45.70 Aligned_cols=88 Identities=15% Similarity=0.041 Sum_probs=54.7
Q ss_pred hhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCCh
Q 015246 7 CQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNS---LLSCSLDLLDEMLEMGIP-PDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 7 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 82 (410)
........+.+-|.+..+.| +++..+.-.+..++++.+ ++++++.+++...+.+.+ .+...+-.+.-++.+.|++
T Consensus 9 l~~~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 33445556666666666555 356666666666777766 555777777777765411 1344555566666777777
Q ss_pred hHHHHHHHHHhcC
Q 015246 83 DEANRVFQDMICG 95 (410)
Q Consensus 83 ~~a~~~~~~~~~~ 95 (410)
++|.+.++.+++.
T Consensus 88 ~~A~~y~~~lL~i 100 (152)
T 1pc2_A 88 EKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777665
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.01 E-value=0.027 Score=53.39 Aligned_cols=154 Identities=11% Similarity=0.029 Sum_probs=93.9
Q ss_pred HHHHhcCChhhHHH-HHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch
Q 015246 39 AGATRNSLLSCSLD-LLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 39 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
......+++++|.+ ++..+ ++......++..+.+.|.++.|.++.+. |. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCH
Confidence 34446778888766 44221 1122336677777888888888776521 11 112334567888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHH
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAM 197 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (410)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...++.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8888875432 3677888888888888888888888887754 344555555566666655555555
Q ss_pred HHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 015246 198 KRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQ 231 (410)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 231 (410)
...| -++....+|.+.|++++|.+++.+
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 4443 123333445556666666655543
No 222
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.00 E-value=0.00072 Score=57.57 Aligned_cols=208 Identities=11% Similarity=0.013 Sum_probs=110.5
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
|.+..+.|++++-+..+.-.++. ..++..=+.|+-+|++.++..+-.+++ ..|+..-...+.+-|...|.+
T Consensus 90 i~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lY 160 (624)
T 3lvg_A 90 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMY 160 (624)
T ss_dssp HHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCH
Confidence 44445555555555554444433 223333345666666666655433332 124444455555666666666
Q ss_pred hHHHHHHHHHhcCC--------------------CCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHH
Q 015246 83 DEANRVFQDMICGD--------------------LTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNIL 142 (410)
Q Consensus 83 ~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 142 (410)
+.|.-+|..+.... -..++.+|.-+-.+|...+++.-|...--.+.-. ..-...+
T Consensus 161 eAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~el 235 (624)
T 3lvg_A 161 DAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEEL 235 (624)
T ss_dssp TTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGG
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHH
Confidence 66655555442110 0235567777777777777766655544333321 1112234
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHc-CCCC------ChhhHHHHHHH
Q 015246 143 IKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRK-GYTF------DGFGYCTVIAA 215 (410)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~ 215 (410)
+..|-..|.+++-+.+++.-... .......|+.|.-.|++- ++++..+.++..-.+ +++. ....|..++-.
T Consensus 236 v~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfL 313 (624)
T 3lvg_A 236 INYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 313 (624)
T ss_dssp GSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHH
Confidence 55566777777777777776642 234666777777666654 455554444433221 2221 23456677777
Q ss_pred HHHcCCHHHHH
Q 015246 216 FVKIGRLKEAT 226 (410)
Q Consensus 216 ~~~~~~~~~a~ 226 (410)
|.+-.+++.|.
T Consensus 314 Y~~ydE~DnA~ 324 (624)
T 3lvg_A 314 YDKYEEYDNAI 324 (624)
T ss_dssp HHHHTCHHHHH
T ss_pred HhcchhHHHHH
Confidence 77777777654
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.99 E-value=0.0062 Score=39.56 Aligned_cols=25 Identities=12% Similarity=0.018 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMI 93 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~ 93 (410)
...+...+...|++++|...|+.+.
T Consensus 46 ~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 46 LSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.095 Score=38.29 Aligned_cols=97 Identities=12% Similarity=0.120 Sum_probs=47.8
Q ss_pred hhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHH
Q 015246 112 CKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGL 191 (410)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 191 (410)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+...
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3455555555555443 1455566666666666666666665555433 333344444455555444
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 015246 192 EILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYM 229 (410)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 229 (410)
++-+.....| -++....++...|+++++.+++
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 4444433332 1233333444455555555555
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.73 E-value=0.043 Score=40.07 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=68.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCch
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYT 117 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (410)
+......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 44556777888887777665 2566788888888888888888888777542 33455556666777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 015246 118 DNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKEL 162 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 162 (410)
++..++-+.....|- ++.....+.-.|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 766666666555532 233344555677788877777554
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.72 E-value=0.074 Score=36.53 Aligned_cols=149 Identities=14% Similarity=0.116 Sum_probs=101.7
Q ss_pred hhHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 242 VSYNTLINL--YCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 242 ~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
.+...|+.+ +.-.|..++..++..+..... +..-++.++--....-+-+-..++++.+-+. + |
T Consensus 6 el~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--D--------- 70 (172)
T 1wy6_A 6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D--------- 70 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C---------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh-c--C---------
Confidence 344455554 445688888888888887652 5556777776666666666666666665442 1 1
Q ss_pred HHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHH
Q 015246 320 RLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKI 399 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 399 (410)
...+|+.......+-.+. .+.......+..+...|+-++-.+++..++.. -+|++.....+..+|.+.|+..+|.++
T Consensus 71 -is~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 71 -LDKCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp -GGGCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -cHhhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 123444444444443322 24556666778888999999999999886554 478889999999999999999999999
Q ss_pred HHHHHHccC
Q 015246 400 QSKIRMAKI 408 (410)
Q Consensus 400 ~~~~~~~~~ 408 (410)
+.++-+.|+
T Consensus 148 l~~AC~kG~ 156 (172)
T 1wy6_A 148 LIEACKKGE 156 (172)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhhh
Confidence 999888775
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.65 E-value=0.022 Score=37.91 Aligned_cols=64 Identities=14% Similarity=0.014 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC------CCCChHhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 015246 31 VVTYNSLIAGATRNSLLSCSLDLLDEMLEMG------IPPDVWSYNSLMHCLFQLGKPDEANRVFQDMIC 94 (410)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 94 (410)
...+-.+...+...|++..|...|+...+.. ..+...++..+..++.+.|+++.|...++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455555555555665555555554421 112234444555555555555555555555443
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.64 E-value=0.01 Score=40.57 Aligned_cols=85 Identities=13% Similarity=0.020 Sum_probs=55.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH---HHHHHHhhccCC-c----hhHHHHHHHHHhcCC
Q 015246 286 LCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDH---AINVFESMEVKD-S----FTYSSMVHNLCKAKR 357 (410)
Q Consensus 286 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~----~~~~~l~~~~~~~~~ 357 (410)
-........+.+.+......| .++..+-..+..++.+...... ++.+++.+...+ + .....+..++.+.|+
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 333444555566666555544 3666777777777777776555 777777766553 2 345556667777888
Q ss_pred hhhHHHHHHHHHHc
Q 015246 358 LPSASKLLLSCLKS 371 (410)
Q Consensus 358 ~~~A~~~~~~~~~~ 371 (410)
+++|.+.++.+++.
T Consensus 90 Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 90 YEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888887765
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.58 E-value=0.52 Score=44.55 Aligned_cols=150 Identities=11% Similarity=0.001 Sum_probs=66.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCchHHH--HHHHHHHHhcC
Q 015246 215 AFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLIN--LYCKEGKLEAAYLLLDEMEKQGFECDKYTH--TILIDGLCKAG 290 (410)
Q Consensus 215 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~ 290 (410)
.+...|+.+....++..+.+.. +......++. ++...|+.+.+..+++.+.... .|....- ..+.-+|+..|
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSC
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCC
Confidence 3445566666666666555431 2222222222 3335566666666666655431 1221111 12233455566
Q ss_pred ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC-CchhHHHHHHH--HHhcCCh-hhHHHHHH
Q 015246 291 NIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK-DSFTYSSMVHN--LCKAKRL-PSASKLLL 366 (410)
Q Consensus 291 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~--~~~~~~~-~~A~~~~~ 366 (410)
+......++..+... ...+..-...+.-++...|+.+.+.++++.+... ++.+-.....+ ....|+. .+++..+.
T Consensus 575 n~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 575 NNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp CHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 655555566665543 1122222222222333445555555555544433 33333322222 2223333 45566666
Q ss_pred HHH
Q 015246 367 SCL 369 (410)
Q Consensus 367 ~~~ 369 (410)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 664
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.48 E-value=0.058 Score=42.98 Aligned_cols=85 Identities=11% Similarity=0.049 Sum_probs=56.9
Q ss_pred hhhHHHHHHHHHHcCCCCC---hHhHHHHHHHHHh-----cCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhc-Cch
Q 015246 47 LSCSLDLLDEMLEMGIPPD---VWSYNSLMHCLFQ-----LGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKN-RYT 117 (410)
Q Consensus 47 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 117 (410)
...|..++++..+. .|+ ...|..+...|.. -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 34566667776664 344 4567777777777 377888888888777664222366667777777774 777
Q ss_pred HHHHHHHHHHHhCCCC
Q 015246 118 DNALRMFRGLQKHGFV 133 (410)
Q Consensus 118 ~~a~~~~~~~~~~~~~ 133 (410)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 8888888877776544
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.48 E-value=2.3e-05 Score=66.37 Aligned_cols=245 Identities=17% Similarity=0.143 Sum_probs=146.5
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 65 DVWSYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 65 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
.+..|..|..+....+.+.+|++-|- + ..|+..|..++.+..+.|.+++-...+...++..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 45667788888888888777766542 2 34556777888888889999988888887776533 3344457888
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcC--------------------CCC
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKG--------------------YTF 204 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------~~~ 204 (410)
+|++.++..+..+++. .||..-...+..-|...|.++.|.-+|..+..-. -..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888776554442 2565556677788888888888877776653211 012
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 015246 205 DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILID 284 (410)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 284 (410)
++.||..+..+|...+.+.-|.-.--.++- .+.-...++..|-..|-+++.+.+++.-.... .....+|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence 455666666666666665555443333321 12222344555666666666666666655321 334556666666
Q ss_pred HHHhcCChhHHHHHHHHHHhc-CCC------CCHHHHHHHHHHHHccCChHHHH
Q 015246 285 GLCKAGNIKGARLHLEYMNKI-GFD------SNLEAYNCIVDRLGKDGKIDHAI 331 (410)
Q Consensus 285 ~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~A~ 331 (410)
.|++- ++++..+.++....+ +++ -....|..++..|.+-.++|.|.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 65543 344444444332211 111 12345666666666666666553
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.30 E-value=0.068 Score=37.55 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=33.0
Q ss_pred CchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 015246 115 RYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAP 169 (410)
Q Consensus 115 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (410)
++.++|.++|+.+.+.+-.. ...|......-.+.|++..|.+++......+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 56666777776665542222 5555555666666777777777777766655443
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.28 E-value=0.13 Score=36.11 Aligned_cols=55 Identities=13% Similarity=0.052 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 015246 254 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDS 309 (410)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 309 (410)
.++.++|.++|+.+...+-.- ...+....+--.+.|+...|.+++...+..+..|
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 356666777776665442222 4444444444556777777777777776655333
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.22 E-value=0.16 Score=34.90 Aligned_cols=64 Identities=20% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 015246 103 TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGH 167 (410)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 167 (410)
.....+..+...|..++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334444455555555555555555433 2344555555555555555555555555555555554
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.17 E-value=0.062 Score=42.83 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-C
Q 015246 10 VSFDAGYTILNRMREAGISPD---VVTYNSLIAGATR-----NSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQL-G 80 (410)
Q Consensus 10 g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 80 (410)
+....|...+++..+.. |+ -..|..+...|.. -|+.++|.+.|++..+.+..-+..++......++.. |
T Consensus 177 ~~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 177 DTVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HhHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 44678888899998875 55 5689999999998 499999999999999975433478888889988884 9
Q ss_pred ChhHHHHHHHHHhcCCCC--CChhHHHH
Q 015246 81 KPDEANRVFQDMICGDLT--PCTATFNI 106 (410)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~--~~~~~~~~ 106 (410)
+.+.+.+.+++.+..... |+....+.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 999999999999987554 55444443
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.75 E-value=0.099 Score=35.71 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=11.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
+.-++.+.|+++.|.+.++.+++
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 33444444555555554444444
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.37 E-value=0.15 Score=35.46 Aligned_cols=64 Identities=6% Similarity=0.031 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHccCChH---HHHHHHHhhccC----CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 308 DSNLEAYNCIVDRLGKDGKID---HAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 308 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
.|+..+-..+..++.+....+ +++.+++.+... .......+..++.+.|++++|.+..+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 566677667777777766543 556666665543 2334555666777788888888888877765
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.37 E-value=0.095 Score=35.97 Aligned_cols=65 Identities=6% Similarity=-0.002 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHccCCh---HHHHHHHHhhccC----CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 307 FDSNLEAYNCIVDRLGKDGKI---DHAINVFESMEVK----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 307 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
-.|+..+-..+..++.+..+. ..++.+++.+... ....+..+..++.+.|++++|.+..+.+++.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 356666666667777766654 3456666655443 2334556666777777777777777777744
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.12 E-value=2.3 Score=40.36 Aligned_cols=254 Identities=10% Similarity=-0.040 Sum_probs=137.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC--CCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCC-------CChhhHH--HHH
Q 015246 145 GLCKAGRLRTARWILKELGDSG--HAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYT-------FDGFGYC--TVI 213 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~--~l~ 213 (410)
+....|+.++++.+++.....+ -.+....-..+.-+....|..+++...+.......-. +....-. .+.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556788888888887765421 1122233333444455566656677777776654210 1111111 222
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHH--HHHHhc
Q 015246 214 AAFVKIGRLKEATDYMEQMVTDGVQLDIVSYN--TLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILI--DGLCKA 289 (410)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~ 289 (410)
.++...++ +++.+.+..+..... +...... .+...+.-.|+.+....++..+.+.. +..+...++ -++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 23333344 455555555554311 1111122 23334556788888888888776542 333333333 445578
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHccCChHHHHHHHHhhccC-Cchh--HHHHHHHHHhcCChhhHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEA--YNCIVDRLGKDGKIDHAINVFESMEVK-DSFT--YSSMVHNLCKAKRLPSASKL 364 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~l~~~~~~~~~~~~A~~~ 364 (410)
|+.+.+..+.+.+... ..|.... ...+.-+|+..|+.....+++..+... +..+ ...+.-++...|+.+.+.++
T Consensus 538 g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 538 GRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp TCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred CChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 9999999998888764 1222221 123445677888987777788887755 2222 22333344557777777787
Q ss_pred HHHHHHcCCCCcHhhHHHHHHHHhhcCCH-HHHHHHHHHHHH
Q 015246 365 LLSCLKSGVRILKSAQKAVVDGLRHSGCR-REAKKIQSKIRM 405 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 405 (410)
+..+.+.+ .|....-..+.-+....|.. .++...++++..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77666543 44443333333334444443 567777777653
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.86 E-value=1.8 Score=37.60 Aligned_cols=187 Identities=12% Similarity=0.044 Sum_probs=95.5
Q ss_pred cCchHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHH----Hhc
Q 015246 114 NRYTDNALRMFRGLQKH-----GFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCC----FRN 184 (410)
Q Consensus 114 ~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 184 (410)
.++++.|++.+-.+.+. +..........++..|...|+++...+.+..+....... ......+++.+ ...
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37788888877666542 233456667778888888898888877776665432221 12222333322 122
Q ss_pred cchhHHHHHHHHHHHc--CCCCC--------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---hhhHHHHHH
Q 015246 185 RKYKLGLEILSAMKRK--GYTFD--------GFGYCTVIAAFVKIGRLKEATDYMEQMVTD--GVQLD---IVSYNTLIN 249 (410)
Q Consensus 185 ~~~~~a~~~~~~~~~~--~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~ 249 (410)
...+.... ...... .+... ......+...+...|++.+|.+++..+... +..+. ...+...++
T Consensus 108 ~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 108 KSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp CTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred CchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 22221111 111111 00111 111234566666777777777777776543 11111 234455556
Q ss_pred HHHhcCCHHHHHHHHHHHHh----CCCCCc--hHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 250 LYCKEGKLEAAYLLLDEMEK----QGFECD--KYTHTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
.|...+++..|..++.++.. ....|+ ...+...+..+...+++.+|-+.|.++.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66667777777766666532 111111 1234444555556666666666665554
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.73 E-value=2 Score=42.46 Aligned_cols=131 Identities=18% Similarity=0.130 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 015246 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG----FGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLDIVSYNTL 247 (410)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 247 (410)
.-|..++..+.+.+.++.+.++-....+...+.+. ..|..+...+...|++++|...+-.+..... -...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34555566666666666666665555543211111 1345555666666666666666655554322 23444555
Q ss_pred HHHHHhcCC------------HHHHHHHHHHHHh-C-CCCCchHHHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 015246 248 INLYCKEGK------------LEAAYLLLDEMEK-Q-GFECDKYTHTILIDGLCKAGNIKGA-RLHLEYMNK 304 (410)
Q Consensus 248 ~~~~~~~~~------------~~~a~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 304 (410)
+...+..|. .++..+++..-.+ . .+...+.-|..|-.-+...|++..| ..+|+.+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 554444433 3344444433211 1 1111223344444445566666654 445555543
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.45 Score=43.99 Aligned_cols=53 Identities=6% Similarity=-0.203 Sum_probs=37.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 350 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
..+...|+++-|+++.++++..- |.+..+|..|..+|...|+++.|.-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44556777777777777777552 445777777777777777777777776655
No 243
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.25 E-value=0.57 Score=43.32 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=42.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 283 IDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
..-+...|+++.|+.+-++.... .+.+-.+|..|..+|...|+++.|+-.+..++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 33456778888888888888775 34457788888888888888888888888775
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.19 E-value=0.66 Score=29.95 Aligned_cols=48 Identities=8% Similarity=0.080 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 293 KGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 293 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
-+..+-++.+....+.|++.+....+.+|.+.+++..|.++|+.+..+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344555555555556666666666666666666666666666655443
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.08 E-value=0.55 Score=39.91 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=65.0
Q ss_pred chHHHHHHHHHH---HhcCChhHHHHHHHHHHhc--CCC-CCH------------------HHHHHHHHHHHccCChHHH
Q 015246 275 DKYTHTILIDGL---CKAGNIKGARLHLEYMNKI--GFD-SNL------------------EAYNCIVDRLGKDGKIDHA 330 (410)
Q Consensus 275 ~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~--~~~-~~~------------------~~~~~l~~~~~~~g~~~~A 330 (410)
|...|..++... ...|+.+.+...++++... |.. ++. .....++..+...|++++|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 555566655443 2458889999999888764 211 111 0112334455566777777
Q ss_pred HHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCcHhhHHHH
Q 015246 331 INVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLK-----SGVRILKSAQKAV 383 (410)
Q Consensus 331 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 383 (410)
...+..+... +...|..++.++.+.|+..+|++.|+++.+ .|+.|++.+-...
T Consensus 191 ~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 191 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 7666655443 455677777777777777777777766542 3677766655433
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.92 E-value=3.7 Score=40.67 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 015246 243 SYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDK----YTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIV 318 (410)
Q Consensus 243 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 318 (410)
-|..++..+.+.+.++.+.++-....+.....+. ..|..++..+...|++++|...+-.+..... -...+..++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3566666777777777777666655543211111 2466677777777777777777766654322 233455555
Q ss_pred HHHHccCCh------------HHHHHHHHhhcc-C-----CchhHHHHHHHHHhcCChhhHHH-HHHHHHH
Q 015246 319 DRLGKDGKI------------DHAINVFESMEV-K-----DSFTYSSMVHNLCKAKRLPSASK-LLLSCLK 370 (410)
Q Consensus 319 ~~~~~~g~~------------~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~ 370 (410)
...+..|.. ++..+++..--. . .+..|..|-.-+...|++..|.. +|+.+.+
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 544444433 333333332111 1 23345555555667777765554 4555543
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.80 E-value=0.24 Score=42.10 Aligned_cols=77 Identities=8% Similarity=0.025 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhc-----CCCCCChhHHHHH
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMIC-----GDLTPCTATFNIM 107 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 107 (410)
+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|.+.|+.+.. .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 55667888889999999999999988763 44788999999999999999999999988754 3888988776544
Q ss_pred HHH
Q 015246 108 LNG 110 (410)
Q Consensus 108 ~~~ 110 (410)
-..
T Consensus 252 ~~i 254 (388)
T 2ff4_A 252 ERI 254 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.57 E-value=3.3 Score=35.86 Aligned_cols=51 Identities=14% Similarity=0.035 Sum_probs=32.7
Q ss_pred CChhhHHHHHHHHHHc-----CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhcC
Q 015246 45 SLLSCSLDLLDEMLEM-----GIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMICG 95 (410)
Q Consensus 45 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 95 (410)
|+++.|++.+-.+.+. +..........++..|...|+++...+.+..+...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk 85 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK 85 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 6677777766555542 23334556677777777888887777766655543
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.24 E-value=1 Score=29.04 Aligned_cols=48 Identities=6% Similarity=-0.066 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 257 LEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 257 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
.-+..+-++.+....+.|++......+++|.+.+++..|.++++-+..
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555556666566666666666666666666666666666666654
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.18 E-value=1.2 Score=31.97 Aligned_cols=113 Identities=12% Similarity=0.065 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCC-------HHHHHHHHHHHHccCChHHHHHHHHhhccC------Cch
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMNKIG-FDSN-------LEAYNCIVDRLGKDGKIDHAINVFESMEVK------DSF 343 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~ 343 (410)
++..-++.+...|.++.|+.+.+.+.... ..|+ ..++..+.+++...|++..|...|++.... +..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445666777788888877777654321 1222 124566667777777777777777764322 111
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 344 TYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 344 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
....+. ....... ......+.+.-..+..+|.+.|++++|+.+++.+
T Consensus 102 ~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 110000 0000000 0011223344455667778888888888877765
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.13 E-value=1.4 Score=31.71 Aligned_cols=61 Identities=5% Similarity=-0.081 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015246 208 GYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDI-------VSYNTLINLYCKEGKLEAAYLLLDEME 268 (410)
Q Consensus 208 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (410)
.+..-+..+...|.++.|+-+.+.+.... ..|+. .++..+..++...+++..|...|++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445556666677777766666654431 11221 134555566666667777776666653
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.03 E-value=1.5 Score=30.18 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=30.0
Q ss_pred CChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 239 LDIVSYNTLINLYCKEGKL---EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
|+..+--.+..++++..+. ..++.++.++.+.+..-....+-.+..++.+.|+++.|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444332 23444555554433111233344444555555555555555555555
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.31 E-value=1.6 Score=30.02 Aligned_cols=47 Identities=9% Similarity=0.106 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC
Q 015246 294 GARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK 340 (410)
Q Consensus 294 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 340 (410)
+..+-++.+....+.|++.+....+.+|.+.+++..|.++|+-+..+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 44555555556666677777777777777777777777777665544
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=91.81 E-value=2.2 Score=29.32 Aligned_cols=61 Identities=8% Similarity=0.018 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 015246 258 EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVD 319 (410)
Q Consensus 258 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 319 (410)
-+..+-++.+....+.|++......+++|.+.+++..|.++++-++.. ..+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 345555666666666777777777777777777777777777766643 2333444555443
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=90.87 E-value=9.2 Score=34.74 Aligned_cols=76 Identities=9% Similarity=-0.040 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 015246 70 NSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKA 149 (410)
Q Consensus 70 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 149 (410)
..-+..+.+.+++......+.. .+.+...-.....+....|+..+|......+-..|.. .+.....++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHC
Confidence 3445556667777666654432 1444444445566677777777777666666555432 344555555555554
Q ss_pred CC
Q 015246 150 GR 151 (410)
Q Consensus 150 ~~ 151 (410)
|.
T Consensus 150 g~ 151 (618)
T 1qsa_A 150 GK 151 (618)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.76 E-value=0.93 Score=35.62 Aligned_cols=114 Identities=10% Similarity=0.034 Sum_probs=72.3
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----HhHHHHHHHHHh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDV----WSYNSLMHCLFQ 78 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 78 (410)
+..+.+.|++++|++....-++.. |.|...-..+++.+|-.|++++|.+-++...+.. |+. ..|..+|++
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHH---
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHH---
Confidence 345778899999999998888775 6678888889999999999999999988888753 333 234444432
Q ss_pred cCChhHHHHHHHHHhcCCCCC-----ChhHHHHHHHHHh--hcCchHHHHHHHHHHHh
Q 015246 79 LGKPDEANRVFQDMICGDLTP-----CTATFNIMLNGLC--KNRYTDNALRMFRGLQK 129 (410)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 129 (410)
...=.++..-+-.| ...-...++.+.. ..|+.++|..+-.++.+
T Consensus 78 -------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 -------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11111222221111 1222333444333 45788888887777754
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.31 E-value=3.4 Score=28.84 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=28.0
Q ss_pred CChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 015246 239 LDIVSYNTLINLYCKEGKL---EAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 304 (410)
|+..+--.+..++.+..+. .+++.+++++.+.+..-.....-.+..++.+.|+++.|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3333333344444443322 23444444444332111223333344445555555555555555554
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.15 E-value=6.6 Score=31.93 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHH
Q 015246 309 SNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVH 350 (410)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~ 350 (410)
-++.....+...|.+.|++.+|...|-.....++..+..++.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLW 173 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHH
Confidence 356667777777777777777777664222223444444433
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.88 E-value=8.3 Score=32.65 Aligned_cols=166 Identities=10% Similarity=-0.016 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCC---cHHHHHHHHHHHHhc-cchhHHHHHHHHHHHcCCCCChhhH-
Q 015246 136 LVTYNILIKGLCKAGRLRTARWILKELGDS-GHAP---NAITYTTIMKCCFRN-RKYKLGLEILSAMKRKGYTFDGFGY- 209 (410)
Q Consensus 136 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 209 (410)
......|...|.+.|+.++..+++...... +..| .......++..+... +..+.-.++..+..+.. .....+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 345667888899999999988888876542 1111 233445566666543 22333333333333221 1111222
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCchH
Q 015246 210 -----CTVIAAFVKIGRLKEATDYMEQMVTDGVQLD-----IVSYNTLINLYCKEGKLEAAYLLLDEMEKQ--GFECDKY 277 (410)
Q Consensus 210 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 277 (410)
..++..|...|++.+|.+++..+.+.=...| ..++..-++.|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2466777777888888777777766411111 223444455667777777777777766432 1223332
Q ss_pred HHHH----HHHHHH-hcCChhHHHHHHHHH
Q 015246 278 THTI----LIDGLC-KAGNIKGARLHLEYM 302 (410)
Q Consensus 278 ~~~~----l~~~~~-~~~~~~~a~~~~~~~ 302 (410)
.... -...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2211 122344 567777776666554
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.95 E-value=13 Score=32.11 Aligned_cols=98 Identities=14% Similarity=-0.027 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCC-CCChhhHHH---
Q 015246 138 TYNILIKGLCKAGRLRTARWILKELGDS--GHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGY-TFDGFGYCT--- 211 (410)
Q Consensus 138 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~--- 211 (410)
+...+...|.+.|+++.|.+.|.++... +...-...+-..++.+...+++..+...+.++...-. .++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667788888888888888888887663 2223355666777788888888888888887754311 122211111
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHHc
Q 015246 212 -VIAAFVKIGRLKEATDYMEQMVTD 235 (410)
Q Consensus 212 -l~~~~~~~~~~~~a~~~~~~~~~~ 235 (410)
-+..+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 112233567888888777766544
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.78 E-value=12 Score=30.75 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHH
Q 015246 309 SNLEAYNCIVDRLGKDGKIDHAINVF 334 (410)
Q Consensus 309 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 334 (410)
-++.....+...|.+.+++.+|...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 34555566666666666666666655
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.31 E-value=14 Score=31.85 Aligned_cols=99 Identities=9% Similarity=-0.157 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHcCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCChhhHHHH-
Q 015246 172 ITYTTIMKCCFRNRKYKLGLEILSAMKRKGY--TFDGFGYCTVIAAFVKIGRLKEATDYMEQMVTDG-VQLDIVSYNTL- 247 (410)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l- 247 (410)
.+...+...|.+.|+++.|.+.+.++..... ..-...+...++.+...+++..+...+.++...- ..++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3566788899999999999999999987632 2234467778888999999999999999886541 11232222221
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhC
Q 015246 248 ---INLYCKEGKLEAAYLLLDEMEKQ 270 (410)
Q Consensus 248 ---~~~~~~~~~~~~a~~~~~~~~~~ 270 (410)
...+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 22345678999999888877543
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.75 E-value=15 Score=30.13 Aligned_cols=192 Identities=10% Similarity=0.075 Sum_probs=105.3
Q ss_pred cCChHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 015246 9 FVSFDAGYTILNRMREAGIS----PDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDE 84 (410)
Q Consensus 9 ~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (410)
.+++++.++-++.-.+.|-. --..+|.++..-|.+.+++++|++++-.-.. .+.+.|+...
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~s 73 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGS 73 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcch
Confidence 45666777777777776621 1234677788888889999999888755322 2333344433
Q ss_pred HHHH----HHHHhcCCCCCChhHHHHHHHHHhhcCchH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCCHH
Q 015246 85 ANRV----FQDMICGDLTPCTATFNIMLNGLCKNRYTD-NALRMFRGLQ----KHG--FVPELVTYNILIKGLCKAGRLR 153 (410)
Q Consensus 85 a~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~ 153 (410)
+-++ ++-..+.++++|......++..+......+ .=..+++++. +.| ..-++.....+...|.+.+++.
T Consensus 74 g~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~ 153 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFE 153 (336)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHH
Confidence 3332 233334455666666666666555443211 1122222222 112 3346677778888888888888
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015246 154 TARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (410)
+|...|- . |..+....+..++.-+...+...+ .+...... +--|...++...|..+++...
T Consensus 154 ~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRa-VL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 154 AAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARA-VLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHH-HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHH-HHHHHHhCCHHHHHHHHHHHH
Confidence 8887772 2 333444666555554444333221 12222222 233555678888888776655
Q ss_pred H
Q 015246 234 T 234 (410)
Q Consensus 234 ~ 234 (410)
+
T Consensus 215 ~ 215 (336)
T 3lpz_A 215 S 215 (336)
T ss_dssp H
T ss_pred H
Confidence 4
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.50 E-value=3.4 Score=32.54 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=41.0
Q ss_pred HHHHccCChHHHHHHHHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 319 DRLGKDGKIDHAINVFESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 319 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
....+.|++++|+.....-.+. |...-..++..+|-.|++++|.+-++.+.+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4466788888888877765554 6667777888888889999998888888765
No 265
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.44 E-value=8.5 Score=24.80 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=24.6
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 76 LFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
+...|++++|..+.+... .||...|..|.. .+.|..+++...+..+...
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 445556666555544433 455555544432 2445555555555555444
No 266
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=80.99 E-value=23 Score=29.48 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=14.0
Q ss_pred HHHHHHHhhcCchHHHHHHHHHHH
Q 015246 105 NIMLNGLCKNRYTDNALRMFRGLQ 128 (410)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~ 128 (410)
..++.-|...++.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 345555666666666666666543
No 267
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.67 E-value=9.2 Score=24.70 Aligned_cols=49 Identities=10% Similarity=0.055 Sum_probs=24.3
Q ss_pred HHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhC
Q 015246 76 LFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
+...|++++|..+.+... .||...|..|.. .+.|..+++...+..+...
T Consensus 50 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 444555555555554433 455555544432 2445555555555454444
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.50 E-value=34 Score=28.95 Aligned_cols=30 Identities=10% Similarity=0.156 Sum_probs=18.5
Q ss_pred CchhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 341 DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 341 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
....+..+...+.- ..+++...+-+|+..|
T Consensus 315 srIsl~~iA~~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 315 SRVQVAHVAESIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp SEEEHHHHHHHHTC--CHHHHHHHHHHHHHTT
T ss_pred ceeeHHHHHHHHCc--CHHHHHHHHHHHHHCC
Confidence 44555555554432 5677888888887654
No 269
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.49 E-value=22 Score=26.65 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHhcCCH
Q 015246 135 ELVTYNILIKGLCKAGRL 152 (410)
Q Consensus 135 ~~~~~~~l~~~~~~~~~~ 152 (410)
+...-...+.++.+.++.
T Consensus 94 ~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SHHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHHHhCcH
Confidence 444444444455555443
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.42 E-value=22 Score=26.63 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015246 220 GRLKEATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 274 (410)
Q Consensus 220 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 274 (410)
+...+...+|..|...|+-.. ...|......+...|++.+|.++|+.-.+.+..|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666666666655433 3345555556666666666666666666665554
No 271
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.97 E-value=56 Score=29.75 Aligned_cols=178 Identities=10% Similarity=-0.011 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHhhCCCCCcHHHHH----HHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHcCCHHHHH
Q 015246 151 RLRTARWILKELGDSGHAPNAITYT----TIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 226 (410)
+.+.|...+........ .+..... .+.......+...++...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 55666666666643221 1222111 1222222233233444444443332 233333333444445667777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------------CCCC-------ch---H-----HH
Q 015246 227 DYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQ------------GFEC-------DK---Y-----TH 279 (410)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------~~~~-------~~---~-----~~ 279 (410)
..|..+.... .......-.+..++...|+.++|..+|..+... |.++ +. . .-
T Consensus 306 ~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~ 384 (618)
T 1qsa_A 306 TWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPE 384 (618)
T ss_dssp HHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHH
T ss_pred HHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChH
Confidence 7776665421 112333444555666677777777777665431 1110 00 0 11
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 015246 280 TILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFE 335 (410)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 335 (410)
...+..+...|....|...+..+.+. . +......+.......|.++.++....
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 12234456677777777777776653 2 22223344444455666666554443
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=72.06 E-value=28 Score=26.00 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=41.8
Q ss_pred ccchhHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 015246 184 NRKYKLGLEILSAMKRKGYTFD-GFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQLD 240 (410)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 240 (410)
.+......++|..|...++-.. ...|......+...|++.+|..+|+.-++.+..|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3345677888888887765433 44577777888888888888888888888766663
No 273
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=71.64 E-value=21 Score=27.56 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=17.1
Q ss_pred CChhHHHHHHHHHhhcCchHHHHHHHHHHH
Q 015246 99 PCTATFNIMLNGLCKNRYTDNALRMFRGLQ 128 (410)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (410)
++.......+..+.+.|+.++|.++|-+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 334444455566666666666666665543
No 274
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=69.94 E-value=15 Score=28.95 Aligned_cols=21 Identities=5% Similarity=0.140 Sum_probs=9.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCC
Q 015246 219 IGRLKEATDYMEQMVTDGVQL 239 (410)
Q Consensus 219 ~~~~~~a~~~~~~~~~~~~~~ 239 (410)
.++......+++.+.+.|..+
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~ 212 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADV 212 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCS
T ss_pred ccccchHHHHHHHHHHcCCCC
Confidence 344333344455555554443
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.18 E-value=30 Score=26.33 Aligned_cols=19 Identities=11% Similarity=0.024 Sum_probs=8.8
Q ss_pred HhcCChhhHHHHHHHHHHc
Q 015246 42 TRNSLLSCSLDLLDEMLEM 60 (410)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~ 60 (410)
+..|+.+.+..+++.+.+.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 3445555444444444433
No 276
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=67.23 E-value=50 Score=26.88 Aligned_cols=134 Identities=8% Similarity=0.059 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH---
Q 015246 12 FDAGYTILNRMREAGI-SPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANR--- 87 (410)
Q Consensus 12 ~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--- 87 (410)
+++.+.-++.-.+.|- ---...|.++..-|.+++++++|++++..-.. .+.+.|+...|-+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHH
Confidence 4455555555555441 11234566666667777777777777654322 2333444444333
Q ss_pred -HHHHHhcCCCCCChhHHHHHHHHHhhcCchH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 015246 88 -VFQDMICGDLTPCTATFNIMLNGLCKNRYTD-NALRMFRGLQ----KHG--FVPELVTYNILIKGLCKAGRLRTARWIL 159 (410)
Q Consensus 88 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 159 (410)
+++-..+.+++++......++..+......+ .=.++++.+. +.| ..-++.....+...|.+.|++.+|...|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 2344444566666666666666554422111 1122222222 221 1235666777777777778777777666
Q ss_pred H
Q 015246 160 K 160 (410)
Q Consensus 160 ~ 160 (410)
-
T Consensus 158 i 158 (312)
T 2wpv_A 158 M 158 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.88 E-value=37 Score=25.30 Aligned_cols=167 Identities=9% Similarity=-0.059 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 13 DAGYTILNRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDM 92 (410)
Q Consensus 13 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 92 (410)
.+++..+-.... .++...-...+..+...+..+ +...+..+... ++...-...+.++...++.+. ...+..+
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~~-~~~L~~~ 89 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDERA-VEPLIKA 89 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGGG-HHHHHHH
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHHH-HHHHHHH
Confidence 344444444443 367777777778888877744 44444444442 577777777788888776544 4444444
Q ss_pred hcCCCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHH
Q 015246 93 ICGDLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAI 172 (410)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (410)
.. .++...-...+.++...++.+ +...+..+.. .++...-...+.++...++.+ +...+..+.. .++..
T Consensus 90 l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~ 158 (211)
T 3ltm_A 90 LK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGW 158 (211)
T ss_dssp TT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHH
T ss_pred Hc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHH
Confidence 43 466666667777777777643 4444444443 246666666677777766643 3334444443 24555
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHH
Q 015246 173 TYTTIMKCCFRNRKYKLGLEILSAMKR 199 (410)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (410)
+-...+.++.+.+. ..+...+..+.+
T Consensus 159 vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 159 VRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 55555555555554 334444444443
No 278
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=64.34 E-value=38 Score=24.57 Aligned_cols=79 Identities=22% Similarity=0.090 Sum_probs=44.7
Q ss_pred HccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC----------------CcHh-hHHHHH
Q 015246 322 GKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVR----------------ILKS-AQKAVV 384 (410)
Q Consensus 322 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------------~~~~-~~~~l~ 384 (410)
.-.|.+..++-++.....-...-|. .-++-+.+++..|+..++..++..+. -|.+ .+..++
T Consensus 44 yyngEY~R~Lf~L~~lNT~Ts~YYk--~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLNTCTSKYYE--SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp HHTTCHHHHHHHHHTCCBHHHHHHH--HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 3455666665555433222222222 22455666677777666666633222 1233 445556
Q ss_pred HHHhhcCCHHHHHHHHHH
Q 015246 385 DGLRHSGCRREAKKIQSK 402 (410)
Q Consensus 385 ~~~~~~g~~~~a~~~~~~ 402 (410)
..|...|+.++|++.+..
T Consensus 122 ~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 122 DLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCHHHhhhHhhh
Confidence 678899999999998764
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=63.73 E-value=49 Score=25.57 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=47.9
Q ss_pred HHHHHhcCChhHHHHHHHHHhcC--CCCC----ChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 015246 73 MHCLFQLGKPDEANRVFQDMICG--DLTP----CTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIKGL 146 (410)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 146 (410)
++.+....++++|.+++++..+. ++++ ........+..-.....-.-+..+.+.+.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45566666677776666655432 1111 112222333333344444444455555533 34556666677888
Q ss_pred HhcCCHHHHHHHHHHHh
Q 015246 147 CKAGRLRTARWILKELG 163 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~ 163 (410)
.+.|+.++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 88888888888876553
No 280
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.54 E-value=29 Score=24.96 Aligned_cols=85 Identities=22% Similarity=0.134 Sum_probs=57.3
Q ss_pred HHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHH
Q 015246 16 YTILNRMREAG-----ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPDEANRVF 89 (410)
Q Consensus 16 ~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 89 (410)
..++++..+.- ...|+.-...-+ -|+.. .+.+.++|..|...|+... ...|..-...+-..|++.+|.++|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl-~ya~~--~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy 119 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWL-KLGRL--CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIF 119 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHH-HHHHH--CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHH-HHHHh--cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44555555432 234444333333 23322 2558889999999887654 456777888888999999999999
Q ss_pred HHHhcCCCCCChhH
Q 015246 90 QDMICGDLTPCTAT 103 (410)
Q Consensus 90 ~~~~~~~~~~~~~~ 103 (410)
..-++.+-.|....
T Consensus 120 ~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 120 QEGIQQKAEPLERL 133 (164)
T ss_dssp HHHHHTTCBSHHHH
T ss_pred HHHHHcCCCcHHHH
Confidence 99998876776543
No 281
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=63.01 E-value=11 Score=29.41 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=25.7
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChHh-------HHHHHHHHH--hcCChhHHHHHHHH
Q 015246 40 GATRNSLLSCSLDLLDEMLEMGIPPDVWS-------YNSLMHCLF--QLGKPDEANRVFQD 91 (410)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~ 91 (410)
..++.|+.+....+++.+.+.+..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 34456666666666666655554443222 122222221 45666655555554
No 282
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=62.74 E-value=29 Score=24.91 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=44.1
Q ss_pred hHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCCChHhHHHHHHHHHhcCChh
Q 015246 12 FDAGYTILNR-MREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEM--GIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 12 ~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
.+.+++-+.+ +.+.|.+.+. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-..
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3445554443 4456665544 3455666677777777888888888776 55556666666666677666543
No 283
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=62.57 E-value=95 Score=28.51 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHH--
Q 015246 141 ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVK-- 218 (410)
Q Consensus 141 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 218 (410)
....++.-.|+++.|.+.+-.. ...+..++...+..+ |-.... +.+..........-+..++..|.+
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~----~~lls~~~~~~~lN~arLI~~Yt~~F 367 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKID----SSTRLTKKPKRDIRFANILANYTKSF 367 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCC----CcccccCCCcccccHHHHHHHHHHHh
Confidence 3456667789999999887644 234455554444332 222211 111111100112235666766664
Q ss_pred -cCCHHHHHHHHHHH
Q 015246 219 -IGRLKEATDYMEQM 232 (410)
Q Consensus 219 -~~~~~~a~~~~~~~ 232 (410)
..+...|.+.|-.+
T Consensus 368 ~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 368 RYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTCHHHHHHHHHGG
T ss_pred hcCCHHHHHHHHHHH
Confidence 46777777777666
No 284
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.42 E-value=29 Score=22.46 Aligned_cols=86 Identities=10% Similarity=0.005 Sum_probs=46.1
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
...++|..+-+-+...+. ...+--.-+..+...|+|++|..+.+...-+|...|..+. -.+.|-.+++...+.++-
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 345566666555555432 1111112233456677777777776666655555555443 346666666666666665
Q ss_pred HcCCCCcHhhH
Q 015246 370 KSGVRILKSAQ 380 (410)
Q Consensus 370 ~~~~~~~~~~~ 380 (410)
..| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 555 4444333
No 285
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.49 E-value=30 Score=22.40 Aligned_cols=86 Identities=10% Similarity=-0.035 Sum_probs=45.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 015246 290 GNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 290 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
...++|..+-+-+...+. ...+--.-+..+...|+|++|..+.+...-+|...|..+. -.+.|-.+++...+.++-
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALC--EYRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHH--HHHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 345566666555555432 1111112233456677777777777666655555555443 345666666666666665
Q ss_pred HcCCCCcHhhH
Q 015246 370 KSGVRILKSAQ 380 (410)
Q Consensus 370 ~~~~~~~~~~~ 380 (410)
..| .|....|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 554 4433333
No 286
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=61.42 E-value=54 Score=26.01 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=7.8
Q ss_pred HHHHHhcCChhHHHHHH
Q 015246 73 MHCLFQLGKPDEANRVF 89 (410)
Q Consensus 73 ~~~~~~~~~~~~a~~~~ 89 (410)
+...+..|+.+-+.-++
T Consensus 66 L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 66 LHQAATLEDTKIVKILL 82 (285)
T ss_dssp HHHHTTSSSCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 34444555555444333
No 287
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.14 E-value=38 Score=23.14 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=15.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 279 HTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
...++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3455666666666666666666654
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=58.75 E-value=63 Score=25.20 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHH
Q 015246 141 ILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDG---FGYCTVIAAFV 217 (410)
Q Consensus 141 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 217 (410)
..+...++.|+.+.+..+++.-.......+...+ ..+...+..|+.+ +++.+.+.|..++. ...+ .+...+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~ 80 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRED----IVELLLRHGADPVLRKKNGAT-PFLLAA 80 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCC-cHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCC-HHHHHH
Confidence 4455667788887666666532221111111112 2344445667654 44445555544332 1222 233344
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015246 218 KIGRLKEATDYMEQMVTDGVQLDI---VSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 274 (410)
Q Consensus 218 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 274 (410)
..|+.+-+ +.+.+.|..++. ...+. +...+..|+.+- ++.+.+.|..+
T Consensus 81 ~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~----~~~Ll~~g~~~ 131 (285)
T 1wdy_A 81 IAGSVKLL----KLFLSKGADVNECDFYGFTA-FMEAAVYGKVKA----LKFLYKRGANV 131 (285)
T ss_dssp HHTCHHHH----HHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHHH----HHHHHHTTCCT
T ss_pred HcCCHHHH----HHHHHcCCCCCccCcccCCH-HHHHHHhCCHHH----HHHHHHhCCCc
Confidence 56665544 444445544432 22222 333445566543 33444444433
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.23 E-value=34 Score=24.26 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH
Q 015246 278 THTILIDGLCKAGNIKGARLHLEYMN 303 (410)
Q Consensus 278 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 303 (410)
....++.-|...|+.++|...++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34556677777777777777777764
No 290
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=58.13 E-value=45 Score=25.19 Aligned_cols=26 Identities=8% Similarity=-0.014 Sum_probs=13.0
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHccCC
Q 015246 384 VDGLRHSGCRREAKKIQSKIRMAKIS 409 (410)
Q Consensus 384 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 409 (410)
+....+.|+.+-+.-+++.....+.+
T Consensus 214 l~~A~~~~~~~~v~~L~~~~~~~~~~ 239 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEARQAKGYD 239 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHcCcHHHHHHHHHhhhccCcC
Confidence 34445667777777777666655544
No 291
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=58.03 E-value=45 Score=23.30 Aligned_cols=62 Identities=8% Similarity=0.029 Sum_probs=39.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 20 NRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3456667655543 3345556666666777888888887776556666666666666666643
No 292
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=57.33 E-value=60 Score=24.53 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=12.7
Q ss_pred HHHhhcCchHHHHHHHHHHHhC
Q 015246 109 NGLCKNRYTDNALRMFRGLQKH 130 (410)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~ 130 (410)
..|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3455566666666666665543
No 293
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=57.22 E-value=16 Score=27.04 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=9.5
Q ss_pred HHHccCChHHHHHHHHhh
Q 015246 320 RLGKDGKIDHAINVFESM 337 (410)
Q Consensus 320 ~~~~~g~~~~A~~~~~~~ 337 (410)
.|.+.|.+++|.++|++.
T Consensus 126 VCiekg~Fk~A~eiLkr~ 143 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERI 143 (211)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHH
Confidence 445555555555555553
No 294
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=56.98 E-value=38 Score=23.68 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=37.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 20 NRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 3455666665553 234455555555 677888888887776656666666666666666643
No 295
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=56.01 E-value=47 Score=22.87 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=39.5
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 21 RMREAGISPDVVTYNSLIAGATRNS-LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 456667655553 334556666665 6778888888888876666666666666666666643
No 296
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=54.85 E-value=56 Score=23.42 Aligned_cols=14 Identities=21% Similarity=0.371 Sum_probs=6.8
Q ss_pred CChHHHHHHHHhhc
Q 015246 325 GKIDHAINVFESME 338 (410)
Q Consensus 325 g~~~~A~~~~~~~~ 338 (410)
|++=+|-++|+..-
T Consensus 46 g~yfeaHEvLEe~W 59 (161)
T 2ijq_A 46 GEFHESHDCFEDEW 59 (161)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHH
Confidence 55555555554443
No 297
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.72 E-value=54 Score=23.22 Aligned_cols=50 Identities=10% Similarity=0.111 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 015246 190 GLEILSAMKRKGYTF-DGFGYCTVIAAFVKIGRLKEATDYMEQMVTDGVQL 239 (410)
Q Consensus 190 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 239 (410)
..++|..|...++-. -...|......+...|++.+|.++|+.-++.+..|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555554322 22334455555555556666665555555554444
No 298
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=54.64 E-value=53 Score=23.11 Aligned_cols=63 Identities=8% Similarity=0.166 Sum_probs=40.8
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 015246 20 NRMREAGISPDVVTYNSLIAGATRNS-LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPD 83 (410)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 83 (410)
+.+.+.|.+++..- ..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34566776655533 34555555555 67778888888887766666767666677777766543
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.24 E-value=86 Score=25.42 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 015246 139 YNILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 139 ~~~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3456777777788888877777654
No 300
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.62 E-value=1.6e+02 Score=28.58 Aligned_cols=85 Identities=15% Similarity=0.042 Sum_probs=49.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhccC---------------------
Q 015246 282 LIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESMEVK--------------------- 340 (410)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 340 (410)
++..+...|.++-+.++ ... .+.++..-..+..+|...|++++|..+|+++-..
T Consensus 816 l~~~L~~~~~~~~a~eL----~~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQL----IGW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHH----GGG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHH----Hhh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Confidence 55556666666554432 222 3334444455667788888888888888865422
Q ss_pred -----CchhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 015246 341 -----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKS 371 (410)
Q Consensus 341 -----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 371 (410)
....|..++..+-+.+-++.++++.+.++..
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0013445555555666666666666666643
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.30 E-value=1.2e+02 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=11.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDM 92 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~ 92 (410)
.++.+++.|...+.+++|..+....
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcC
Confidence 3444444444444444444444443
No 302
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=53.27 E-value=80 Score=24.78 Aligned_cols=122 Identities=10% Similarity=-0.042 Sum_probs=52.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 015246 239 LDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAG-NIKGARLHLEYMNKIGFDSNLEAYNCI 317 (410)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 317 (410)
++..+-...+.++...++.+ +...+..+.. .++...-...+.++...+ ....+...+..+.+ .++..+-...
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A 212 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DKNEEVRIEA 212 (280)
T ss_dssp SCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CCCHHHHHHH
Confidence 34444444555555555432 3333333332 234434344444444433 12333444433333 2445555555
Q ss_pred HHHHHccCChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 015246 318 VDRLGKDGKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 318 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 370 (410)
+.++.+.|+....-.+...+...+ .-...+.++...|. .++...+.+++.
T Consensus 213 ~~aL~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 213 IIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-hhhhHHHHHHHh
Confidence 666666665443333333333222 22334455555555 345555555553
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.16 E-value=61 Score=23.33 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 015246 225 ATDYMEQMVTDGVQLD-IVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFEC 274 (410)
Q Consensus 225 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 274 (410)
...+|..|...|+-.. ...|......+...|++.+|.++|+.-++.+..|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4445555555544322 2334444555555566666666666555555444
No 304
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.90 E-value=44 Score=25.51 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHH
Q 015246 15 GYTILNRMREAG-----ISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPD-VWSYNSLMHCLFQLGKPDEANRV 88 (410)
Q Consensus 15 a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 88 (410)
-..++++..+.- ..-|+.- ..+---|+.. .+.+.++|..|...|+... ...|......+-..|++.+|.++
T Consensus 96 L~~lLErc~~~F~~~~rYknD~Ry-LklWl~Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 172 (223)
T 4aez_C 96 LVTLLERCTREFVRNPLYKDDVRY-LRIWMQYVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEV 172 (223)
T ss_dssp HHHHHHHHHHHTTTCGGGTTCHHH-HHHHHHHHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHH-HHHHHHHHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 445666655431 2334432 2232333332 3688899999999887644 45677888888899999999999
Q ss_pred HHHHhcCCCCCChh
Q 015246 89 FQDMICGDLTPCTA 102 (410)
Q Consensus 89 ~~~~~~~~~~~~~~ 102 (410)
|..-++.+-.|-..
T Consensus 173 y~~Gi~~~A~P~~r 186 (223)
T 4aez_C 173 YQKGKRMKAKPFLR 186 (223)
T ss_dssp HHHHHHHTCBSHHH
T ss_pred HHHHHHcCCccHHH
Confidence 99988876566443
No 305
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=50.66 E-value=79 Score=23.91 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=11.5
Q ss_pred HHHhccchhHHHHHHHHHHHc
Q 015246 180 CCFRNRKYKLGLEILSAMKRK 200 (410)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~ 200 (410)
.|.+.|.+++|.+++++....
T Consensus 123 VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 123 ICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHhcchHHHHHHHHHHhcC
Confidence 455555555555555555543
No 306
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=47.88 E-value=71 Score=22.61 Aligned_cols=51 Identities=22% Similarity=0.179 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCc
Q 015246 120 ALRMFRGLQKHGFVPE-LVTYNILIKGLCKAGRLRTARWILKELGDSGHAPN 170 (410)
Q Consensus 120 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (410)
+.++|..|...|+-.. ...|......+-..|++.+|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 6677777766654332 34556666667777777777777777766655553
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=46.36 E-value=1.5e+02 Score=25.81 Aligned_cols=138 Identities=11% Similarity=0.043 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 015246 254 EGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKIDHAINV 333 (410)
Q Consensus 254 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 333 (410)
..+.+-|.++.. +.|++--...|..-...+...|++++|-++--...+ |+--++.+.+.+-.+-...|...--+.+
T Consensus 342 l~n~~lA~~lA~---R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRMAV---RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHHHH---HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHH---hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHH
Confidence 355665555433 344444555666667777777887777766544432 3344555554444433444555555555
Q ss_pred HHhhccC---CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 015246 334 FESMEVK---DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQSKI 403 (410)
Q Consensus 334 ~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 403 (410)
|..+.+. +..--..+++.-...|+.+-..+++.+= .+..+.. +..++ +..+..-|..+|.+.
T Consensus 418 F~~Ll~~g~Ln~~ESlEl~r~vL~q~r~~llekWl~e~---KL~~SEe-LGDlv----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 418 FGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKED---KLECSEE-LGDLV----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHT---CSCCCHH-HHHHH----HHHCSHHHHHHHHHH
T ss_pred HHHHhccCccchHHhhHHhHHHHhccHHHHHHHHHhcC---CccccHH-hHhhh----hhcCHHHHHHHHHHc
Confidence 5554433 2222222344444455544333333321 2233322 22222 444666777777654
No 308
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=45.24 E-value=26 Score=19.38 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCCcHhhHHHHHHHHhhcCC--HHHHHHHHHHH
Q 015246 362 SKLLLSCLKSGVRILKSAQKAVVDGLRHSGC--RREAKKIQSKI 403 (410)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~ 403 (410)
.+.++.+++.|+++.. .-.++.+.|. .+.|.+++.+|
T Consensus 10 ~qmlq~L~eMGFd~er-----ae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 10 RQMLQELVNAGCDQEM-----AGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHHCCHHH-----HHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHH-----HHHHHHHhCcccHHHHHHHHHHh
Confidence 3445666666766642 2335556665 78888877776
No 309
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=45.16 E-value=1.5e+02 Score=25.69 Aligned_cols=97 Identities=9% Similarity=0.093 Sum_probs=48.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhH
Q 015246 130 HGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGY 209 (410)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (410)
.|++--...|..-.+.+...|++++|-++--.... |+-.+..|.+.+-..-...|+..-.+.+|..+.+.| ..+..--
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~~ES 432 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNKYES 432 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCHHHH
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccchHHh
Confidence 34443444455555666667777777666554443 233355555444433333455555556666666555 3333333
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q 015246 210 CTVIAAFVKIGRLKEATDY 228 (410)
Q Consensus 210 ~~l~~~~~~~~~~~~a~~~ 228 (410)
..+++.-...|+.+-.++.
T Consensus 433 lEl~r~vL~q~r~~llekW 451 (494)
T 1bpo_A 433 LELCRPVLQQGRKQLLEKW 451 (494)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred hHHhHHHHhccHHHHHHHH
Confidence 3344444455555444433
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=44.45 E-value=2.3e+02 Score=27.52 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChh----hHHHHHHHHHHcC
Q 015246 171 AITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF----GYCTVIAAFVKIG 220 (410)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~ 220 (410)
..-|..++..+.+.+.++.+.++-+..++.--..|.. .+..+.++.+..|
T Consensus 897 ~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 897 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 3467888888899999999988888888653222322 4555555555443
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.28 E-value=78 Score=22.04 Aligned_cols=34 Identities=9% Similarity=-0.017 Sum_probs=13.3
Q ss_pred CChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhh
Q 015246 356 KRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRH 389 (410)
Q Consensus 356 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 389 (410)
+..-.|.++++.+.+.+...+..|....+..+..
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 3334444444444433333333333333333333
No 312
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=44.24 E-value=21 Score=20.42 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=15.9
Q ss_pred cCChHHHHHHHHHHHHcC-CCCC
Q 015246 9 FVSFDAGYTILNRMREAG-ISPD 30 (410)
Q Consensus 9 ~g~~~~a~~~~~~~~~~~-~~~~ 30 (410)
.-+++.|+..|..+...| ++|+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHH
Confidence 457888888888887665 5544
No 313
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.09 E-value=92 Score=23.39 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=9.4
Q ss_pred HHHHHHhcCChhHHHHHHH
Q 015246 72 LMHCLFQLGKPDEANRVFQ 90 (410)
Q Consensus 72 l~~~~~~~~~~~~a~~~~~ 90 (410)
.+...+..|+.+-+.-+++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 3444555666554444443
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.60 E-value=82 Score=22.11 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=27.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 127 LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
+.+.|..++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 18 l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 44455553332 22334444445555566666666655544445555444445544444
No 315
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.57 E-value=76 Score=23.12 Aligned_cols=12 Identities=0% Similarity=0.191 Sum_probs=5.0
Q ss_pred hcCChhHHHHHH
Q 015246 78 QLGKPDEANRVF 89 (410)
Q Consensus 78 ~~~~~~~a~~~~ 89 (410)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444444433
No 316
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.32 E-value=74 Score=22.18 Aligned_cols=57 Identities=14% Similarity=0.102 Sum_probs=25.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 127 LQKHGFVPELVTYNILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
+.+.|..++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 334454444332 22233333333 4455556665555544444444444444444443
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.98 E-value=1.1e+02 Score=23.36 Aligned_cols=49 Identities=10% Similarity=0.180 Sum_probs=33.3
Q ss_pred HHHHHHHHhhccC-----CchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCc
Q 015246 328 DHAINVFESMEVK-----DSFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRIL 376 (410)
Q Consensus 328 ~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 376 (410)
+.+..+|..|... ....|......+-..|++.+|..+|+..++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4555666666554 445566677777778888888888888777665663
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.96 E-value=1.1e+02 Score=27.00 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHhhccC-C-------chhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCcH
Q 015246 311 LEAYNCIVDRLGKDGKIDHAINVFESMEVK-D-------SFTYSSMVHNLCKAKRLPSASKLLLSCLKSGVRILK 377 (410)
Q Consensus 311 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 377 (410)
...++.++..|...+.++.|..+..+..-+ + ...+..++..+.-.+++.+|.+.+..+...- +++.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka-p~~~ 304 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA-PHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC-SCSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-Ccch
Confidence 567888899999999999999999987654 1 1223345677778899999999999887653 4443
No 319
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=42.61 E-value=97 Score=22.66 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=12.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015246 205 DGFGYCTVIAAFVKIGRLKEATDYMEQMV 233 (410)
Q Consensus 205 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 233 (410)
+..+-...+.++...|+. ++...+..+.
T Consensus 151 ~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 444444455555555543 3333444443
No 320
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.44 E-value=65 Score=21.95 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 35 NSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 35 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 345566666667778888888887776666666666666777766643
No 321
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.31 E-value=22 Score=27.64 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=29.3
Q ss_pred HHHHHhcCChhHHHHHHHHHhcCCCCCChhH-------HHHHHHHHh--hcCchHHHHHHHHHH
Q 015246 73 MHCLFQLGKPDEANRVFQDMICGDLTPCTAT-------FNIMLNGLC--KNRYTDNALRMFRGL 127 (410)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~~ 127 (410)
+...++.|+.+....+++.+.+.+..++... .+.|..+.. +.|..+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3445567888877777776655544443222 223333322 456666666666554
No 322
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=42.12 E-value=92 Score=22.25 Aligned_cols=36 Identities=6% Similarity=0.138 Sum_probs=18.1
Q ss_pred HHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHhhc
Q 015246 302 MNKIGFDSNLEAYNCIVDRLGKDGKIDHAINVFESME 338 (410)
Q Consensus 302 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 338 (410)
+.+.|++++.. -..++..+...++.-.|.++++.+.
T Consensus 24 L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~ 59 (162)
T 4ets_A 24 LRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIK 59 (162)
T ss_dssp HHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHH
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 33455555532 2334445555555556666665553
No 323
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=41.75 E-value=70 Score=21.77 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=27.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC
Q 015246 348 MVHNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 391 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (410)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34445555566677777777776655556666656666665555
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=41.28 E-value=90 Score=21.90 Aligned_cols=62 Identities=6% Similarity=0.057 Sum_probs=40.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 20 NRMREAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
+.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 445566655443 34456666667777788888888888776666676766667777776644
No 325
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.26 E-value=1e+02 Score=22.53 Aligned_cols=28 Identities=7% Similarity=0.003 Sum_probs=12.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEME 268 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 268 (410)
+..+-...+.++...|.. ++...+..+.
T Consensus 151 ~~~vr~~A~~aL~~~~~~-~~~~~L~~~l 178 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGGE-RVRAAMEKLA 178 (201)
T ss_dssp SHHHHHHHHHHHHHHCSH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 444444455555555443 2333444443
No 326
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=40.97 E-value=33 Score=19.60 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 015246 48 SCSLDLLDEMLEMGIPPDVWSYNSLMHCL 76 (410)
Q Consensus 48 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (410)
++|.+.|.+|++..-.++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45555665555543334555666666555
No 327
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=40.77 E-value=60 Score=19.68 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=32.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 015246 21 RMREAGISPDVVTYNSLIAGATRNS-LLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK 81 (410)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (410)
.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3455565555433 34445554443 455666777777665544455555555555555553
No 328
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.10 E-value=88 Score=21.44 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=26.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 127 LQKHGFVPELVTYNILIKGLCKAG-RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
+.+.|..++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444554443322 2333444443 45556666666655544445444444444444443
No 329
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.45 E-value=92 Score=21.85 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhcc
Q 015246 151 RLRTARWILKELGDSGHAPNAITYTTIMKCCFRNR 185 (410)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 185 (410)
..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444444444444444444443
No 330
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=39.32 E-value=98 Score=23.17 Aligned_cols=15 Identities=7% Similarity=-0.144 Sum_probs=6.9
Q ss_pred HHhcCChhhHHHHHH
Q 015246 41 ATRNSLLSCSLDLLD 55 (410)
Q Consensus 41 ~~~~~~~~~a~~~~~ 55 (410)
.+..|+.+....+++
T Consensus 13 A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 13 LAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 334455544444443
No 331
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=39.12 E-value=57 Score=22.55 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKP 82 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (410)
-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-+
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3456666666667778888888888776666777766667777776644
No 332
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.07 E-value=1.2e+02 Score=22.67 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=19.4
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015246 43 RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 80 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (410)
+..+.+.|+-.+-+|.+.| .|....-..++-+.-..|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456666666666666666 444333333333333333
No 333
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=39.04 E-value=1.7e+02 Score=24.39 Aligned_cols=59 Identities=10% Similarity=0.268 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc--hHHHHHHHHHHH
Q 015246 68 SYNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY--TDNALRMFRGLQ 128 (410)
Q Consensus 68 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 128 (410)
....++.-|...++.++|...++++..... .......++......++ .+.+-.++..+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 346678888889999999999998753221 22333334443333332 234555555555
No 334
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.98 E-value=1.4e+02 Score=23.50 Aligned_cols=18 Identities=0% Similarity=-0.175 Sum_probs=9.3
Q ss_pred HHHHHhcCChhHHHHHHH
Q 015246 73 MHCLFQLGKPDEANRVFQ 90 (410)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~ 90 (410)
+...+..|+.+-+..+++
T Consensus 35 L~~A~~~g~~~~v~~Ll~ 52 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLN 52 (285)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 334455666655554444
No 335
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.30 E-value=70 Score=23.31 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=8.2
Q ss_pred HHhcCChhhHHHHHH
Q 015246 41 ATRNSLLSCSLDLLD 55 (410)
Q Consensus 41 ~~~~~~~~~a~~~~~ 55 (410)
.+..|+.+....++.
T Consensus 12 A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 12 AANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHhccHHHHHHHHH
Confidence 345566665555553
No 336
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.10 E-value=67 Score=22.19 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=20.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCcHhhHHHHHHHHhhcC
Q 015246 350 HNLCKAKRLPSASKLLLSCLKSGVRILKSAQKAVVDGLRHSG 391 (410)
Q Consensus 350 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 391 (410)
..+...++.-.|.++++.+.+.+...+..|....+..+...|
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333344444555555555555444444444444444444444
No 337
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=37.74 E-value=48 Score=19.37 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 015246 34 YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQ 78 (410)
Q Consensus 34 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (410)
++.++..++...-.++++-.+.+..+.|.- +..+|..-++.+++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I-~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTI-PLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 455555666666666666666666666532 45555555554444
No 338
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=34.77 E-value=2.2e+02 Score=24.54 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=37.4
Q ss_pred hcCchHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHhhCCC
Q 015246 113 KNRYTDNALRMFRGLQKHGFVPELVTYNILIKGLCKAGR-----LRTARWILKELGDSGH 167 (410)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~ 167 (410)
+.++.+.|+.++.+|.+.|..|....-..+..+.-..|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 467888999999999988877666665666666666554 3345555666555554
No 339
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.76 E-value=1.4e+02 Score=22.23 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=10.7
Q ss_pred cCChhhHHHHHHHHHHcCCCC
Q 015246 44 NSLLSCSLDLLDEMLEMGIPP 64 (410)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~ 64 (410)
.++.+.|+-.+-+|.+.|-.|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHcCCCH
Confidence 345555555555555554333
No 340
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.95 E-value=1.3e+02 Score=21.56 Aligned_cols=53 Identities=6% Similarity=-0.061 Sum_probs=32.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC--chHHHHHHHH-H-----HHhcCChhHHHHHHHHHHh
Q 015246 252 CKEGKLEAAYLLLDEMEKQGFEC--DKYTHTILID-G-----LCKAGNIKGARLHLEYMNK 304 (410)
Q Consensus 252 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 304 (410)
.+.|++-+|-++|+.+-.....+ ....+..+|+ . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34477777777777776554344 3445555555 2 2346777777777777654
No 341
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.79 E-value=1.5e+02 Score=22.19 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=16.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHh
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFR 183 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 183 (410)
..+++.|+-++-+|.+.| .|....-..++.+...
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 445555555555555555 4433333333333333
No 342
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=32.09 E-value=79 Score=20.00 Aligned_cols=19 Identities=16% Similarity=0.003 Sum_probs=8.7
Q ss_pred HHHHHHhcCChhhHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLL 366 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~ 366 (410)
....+.+.|++++|++..+
T Consensus 21 rAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 3344444555555544433
No 343
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=31.34 E-value=1.1e+02 Score=19.73 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 015246 49 CSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLG 80 (410)
Q Consensus 49 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (410)
.|.++.+++...|+.|+..+...++..|...+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 34455555555556555555555555555444
No 344
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=31.26 E-value=1.7e+02 Score=21.99 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=9.7
Q ss_pred HHHhcCChhHHHHHHHHHhc
Q 015246 75 CLFQLGKPDEANRVFQDMIC 94 (410)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~ 94 (410)
..+..|+.+.+..+++.+.+
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~ 34 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQ 34 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 33445555555555554433
No 345
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.66 E-value=1.8e+02 Score=21.92 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=18.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhc
Q 015246 149 AGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRN 184 (410)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 184 (410)
..+++.|+-++-+|.+.|..|....-..++.+....
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDI 83 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDI 83 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 455666666666666655554444444444444333
No 346
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.73 E-value=1.9e+02 Score=21.83 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=36.6
Q ss_pred HHHHHHH---hcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-----hhHHHHHHHHHhcCCCC
Q 015246 36 SLIAGAT---RNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGK-----PDEANRVFQDMICGDLT 98 (410)
Q Consensus 36 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 98 (410)
-+|+++. +.++.+.|+-++-+|.+.|-.|....-..++-+.-..|. ...|...++.....|.+
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455544 457888888888888887766555444444444444443 23344455555555643
No 347
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.51 E-value=1.6e+02 Score=20.82 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=9.3
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 015246 72 LMHCLFQLGKPDEANRVFQDM 92 (410)
Q Consensus 72 l~~~~~~~~~~~~a~~~~~~~ 92 (410)
++.-|...|+.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 344444444444444444444
No 348
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=28.51 E-value=1e+02 Score=19.61 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=18.6
Q ss_pred ChHHHHHHHHhhccCCchhHHHHHHHHHhcCC
Q 015246 326 KIDHAINVFESMEVKDSFTYSSMVHNLCKAKR 357 (410)
Q Consensus 326 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 357 (410)
..+.|.++++.+....+.+|..++.++...|+
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCc
Confidence 45566666666666555666666666554444
No 349
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=28.22 E-value=1.9e+02 Score=21.61 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=18.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHH
Q 015246 148 KAGRLRTARWILKELGDSGHAPNAITYTTIMKCCF 182 (410)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 182 (410)
+..+++.|+-++-+|++.|..|....-..++.+..
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34556666666666666555444444333333333
No 350
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.04 E-value=2.7e+02 Score=23.48 Aligned_cols=199 Identities=16% Similarity=0.213 Sum_probs=84.9
Q ss_pred hhhhhhcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChH--hHHHHHHHHHh
Q 015246 3 IDAYCQFVSFDAGYTILNRMREAGISPDVVT--YNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVW--SYNSLMHCLFQ 78 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 78 (410)
+..-+..|+.+-+. .+.+.|..++... ..+.+...+..|+.+-+.-+++ .|..++.. .-.+.+...+.
T Consensus 18 L~~Aa~~g~~~~v~----~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~ 89 (437)
T 1n11_A 18 LHVASFMGHLPIVK----NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAAR 89 (437)
T ss_dssp HHHHHHHTCHHHHH----HHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHH----HTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHHHHCCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCCCHHHHHHH
Confidence 34445566655444 4444554443221 1223444556677665544443 33332211 11233444556
Q ss_pred cCChhHHHHHHHHHhcCCCCCC---hhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCH
Q 015246 79 LGKPDEANRVFQDMICGDLTPC---TATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPE---LVTYNILIKGLCKAGRL 152 (410)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 152 (410)
.|+.+-+.-+++. |..++ ..-. ..+...+..|..+-+..+++. +..++ ...+ ..+...+..|+.
T Consensus 90 ~g~~~~v~~Ll~~----ga~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~~~g~-t~L~~A~~~g~~ 159 (437)
T 1n11_A 90 IGHTNMVKLLLEN----NANPNLATTAGH-TPLHIAAREGHVETVLALLEK----EASQACMTKKGF-TPLHVAAKYGKV 159 (437)
T ss_dssp HTCHHHHHHHHHH----TCCTTCCCTTCC-CHHHHHHHHTCHHHHHHHHHT----TCCSCCCCTTSC-CHHHHHHHTTCH
T ss_pred CCCHHHHHHHHhC----CCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhC----CCCCcCCCCCCC-CHHHHHHHcCCH
Confidence 6776655555543 22222 1111 223344456666555554433 22211 1111 223445566776
Q ss_pred HHHHHHHHHHhhCCCCCcH---HHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChh---hHHHHHHHHHHcCCHHHHH
Q 015246 153 RTARWILKELGDSGHAPNA---ITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGF---GYCTVIAAFVKIGRLKEAT 226 (410)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~ 226 (410)
+-+..+++ .|..++. ...+ .+......|+.+ +++.+.+.+..++.. ..+ .+...+..|+.+-+.
T Consensus 160 ~~v~~Ll~----~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~ 229 (437)
T 1n11_A 160 RVAELLLE----RDAHPNAAGKNGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVAR 229 (437)
T ss_dssp HHHHHHHH----TTCCTTCCCSSCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHH
T ss_pred HHHHHHHh----CCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHH
Confidence 65544443 3332221 1111 233334555554 444455554333322 122 233445667765554
Q ss_pred HHH
Q 015246 227 DYM 229 (410)
Q Consensus 227 ~~~ 229 (410)
.++
T Consensus 230 ~Ll 232 (437)
T 1n11_A 230 SLL 232 (437)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 351
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.82 E-value=3e+02 Score=23.79 Aligned_cols=58 Identities=9% Similarity=0.095 Sum_probs=40.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccc-----hhHHHHHHHHHHHcCCCC
Q 015246 147 CKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRK-----YKLGLEILSAMKRKGYTF 204 (410)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 204 (410)
.+..+.+.|+.++.+|.+.|..|....-..+..+....|. ...|...++.....|.|-
T Consensus 266 irgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~pe 328 (447)
T 3pvs_A 266 VRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAE 328 (447)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHHH
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCcH
Confidence 3467899999999999998887776666666666665554 345666666667777443
No 352
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.65 E-value=85 Score=23.65 Aligned_cols=20 Identities=5% Similarity=0.048 Sum_probs=12.1
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 015246 250 LYCKEGKLEAAYLLLDEMEK 269 (410)
Q Consensus 250 ~~~~~~~~~~a~~~~~~~~~ 269 (410)
.....|+...+.++.+.+.+
T Consensus 216 ~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 216 CASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34556666666666666654
No 353
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=27.62 E-value=1.7e+02 Score=20.90 Aligned_cols=77 Identities=9% Similarity=-0.025 Sum_probs=43.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChH-HHHH-HHHhhccC-CchhHHHHHHHHHhcCChhhHHHH
Q 015246 288 KAGNIKGARLHLEYMNKIGFDSNLEAYNCIVDRLGKDGKID-HAIN-VFESMEVK-DSFTYSSMVHNLCKAKRLPSASKL 364 (410)
Q Consensus 288 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~-~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 364 (410)
-..++..++..++...-..+ ....-..|+..|.....+. +-.. ++..+... ++..+ +-+.+.-.|++++|+.+
T Consensus 20 l~~dYs~VI~~L~~~~~~~L--p~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde~yL--~YWIyiGRg~~~eAlDi 95 (161)
T 2ynq_A 20 LQNKYSDVITTLEDYAPEDM--PYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDEQYM--LYWIYIGRSQSEEALEL 95 (161)
T ss_dssp TTTCHHHHHHHHTTSCGGGS--CHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCHHHH--HHHHHHHHTCHHHHHHH
T ss_pred HHhhHHHHHHHHhcCChhhC--ChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCHHHH--HHHHHHcCCchHHHHHH
Confidence 35677777666655443322 2233445666776665543 2233 33333332 33333 33556778899999998
Q ss_pred HHHH
Q 015246 365 LLSC 368 (410)
Q Consensus 365 ~~~~ 368 (410)
-+.+
T Consensus 96 A~~L 99 (161)
T 2ynq_A 96 ARTI 99 (161)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8887
No 354
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.55 E-value=1.4e+02 Score=20.07 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=23.2
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHhc
Q 015246 53 LLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRVFQDMIC 94 (410)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 94 (410)
+|+.+....+.|++..-..-+......++++.|.++.-.+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444544433333334445566777777777777664
No 355
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.42 E-value=1.5e+02 Score=22.65 Aligned_cols=24 Identities=8% Similarity=-0.112 Sum_probs=13.0
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCC
Q 015246 40 GATRNSLLSCSLDLLDEMLEMGIP 63 (410)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~~ 63 (410)
..+..|+.+....+++.+.+.|..
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~~ 31 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSKY 31 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCC
Confidence 344556666555566555555443
No 356
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=27.41 E-value=60 Score=15.70 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=17.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHH
Q 015246 382 AVVDGLRHSGCRREAKKIQSKIRM 405 (410)
Q Consensus 382 ~l~~~~~~~g~~~~a~~~~~~~~~ 405 (410)
..+.-|.+.|+.++|..+-.+++.
T Consensus 7 QW~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 7 QWAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 355667888888888888776653
No 357
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.15 E-value=1.7e+02 Score=20.93 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 015246 141 ILIKGLCKAGRLRTARWILKELG 163 (410)
Q Consensus 141 ~l~~~~~~~~~~~~a~~~~~~~~ 163 (410)
.++.-|...++.++|...++++.
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34444555555555555555543
No 358
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=25.64 E-value=59 Score=24.18 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=15.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHH
Q 015246 348 MVHNLCKAKRLPSASKLLLSCL 369 (410)
Q Consensus 348 l~~~~~~~~~~~~A~~~~~~~~ 369 (410)
.+..|.+.|.+++|.+++++..
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHccchHHHHHHHHHHh
Confidence 3456777788888887777764
No 359
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=25.60 E-value=2.3e+02 Score=21.82 Aligned_cols=171 Identities=5% Similarity=-0.043 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 015246 240 DIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCK-AGNIKGARLHLEYMNKIGFDSNLEAYNCIV 318 (410)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 318 (410)
+......++....+.+++++.....+++.+.+...+..--+.+-.+|-. .|....+++++..+.+..-.........++
T Consensus 4 ~re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i 83 (234)
T 2br9_A 4 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 83 (234)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHH
Q ss_pred HHHHcc-----------------------CChHHHHHHHHhhccCCchhHHHHHHHHHhcCChhhHHHHHHHHH---HcC
Q 015246 319 DRLGKD-----------------------GKIDHAINVFESMEVKDSFTYSSMVHNLCKAKRLPSASKLLLSCL---KSG 372 (410)
Q Consensus 319 ~~~~~~-----------------------g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~ 372 (410)
..|... ..-.+..-++.+|...--.........--+..-.+.|.+.|+++. +..
T Consensus 84 ~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~ 163 (234)
T 2br9_A 84 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 163 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHcc
Q ss_pred CCCcHhhHHHHHHHHh-----hcCCHHHHHHHHHHHHHccCCC
Q 015246 373 VRILKSAQKAVVDGLR-----HSGCRREAKKIQSKIRMAKISH 410 (410)
Q Consensus 373 ~~~~~~~~~~l~~~~~-----~~g~~~~a~~~~~~~~~~~~~~ 410 (410)
++|...+...++--+. -.|++++|.++.++.....+..
T Consensus 164 L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~e 206 (234)
T 2br9_A 164 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAE 206 (234)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
No 360
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.28 E-value=2e+02 Score=20.88 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=10.9
Q ss_pred HHhhcCchHHHHHHHHHHHhCCCCC
Q 015246 110 GLCKNRYTDNALRMFRGLQKHGFVP 134 (410)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~ 134 (410)
..+..|..+.-.++.+.+.+.|..+
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCC
Confidence 3334444443344444444444433
No 361
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=25.01 E-value=1.2e+02 Score=20.54 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHH
Q 015246 33 TYNSLIAGATRNSLLSCSLDLLDEMLEMGIPPDVWSYNSLMHCLFQLGKPDEANRV 88 (410)
Q Consensus 33 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 88 (410)
.|.-.|...+..++.+-|.++++-..+.| +...|.+.+-.|...=+++-++++
T Consensus 34 LykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 34 LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 34445666677888888888888887764 667777777777777777776664
No 362
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.50 E-value=2e+02 Score=20.79 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=8.5
Q ss_pred hcCChhhHHHHHHHHHHcCCC
Q 015246 43 RNSLLSCSLDLLDEMLEMGIP 63 (410)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~ 63 (410)
..|+.+.-.++.+.+.+.|..
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCC
T ss_pred HcCCcchHHHHHHHHHHCCCC
Confidence 333333333444444444433
No 363
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.33 E-value=86 Score=16.59 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=16.9
Q ss_pred HHHHHHcCCCCcHhhHHHHHHHHhhcCCHHHHHHHH
Q 015246 365 LLSCLKSGVRILKSAQKAVVDGLRHSGCRREAKKIQ 400 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 400 (410)
++++.+.|++.+. ...++...|+.+.|.+++
T Consensus 13 v~~L~~MGF~~~~-----a~~AL~~~~n~e~A~~~L 43 (47)
T 2ekk_A 13 LQQLMDMGFTREH-----AMEALLNTSTMEQATEYL 43 (47)
T ss_dssp HHHHHHHHCCHHH-----HHHHHHHSCSHHHHHHHH
T ss_pred HHHHHHcCCCHHH-----HHHHHHHcCCHHHHHHHH
Confidence 3444444765522 233444456788887765
No 364
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=24.23 E-value=2.2e+02 Score=21.15 Aligned_cols=17 Identities=6% Similarity=-0.034 Sum_probs=7.9
Q ss_pred HHHhcCChhHHHHHHHH
Q 015246 75 CLFQLGKPDEANRVFQD 91 (410)
Q Consensus 75 ~~~~~~~~~~a~~~~~~ 91 (410)
..+..|+.+-+..+++.
T Consensus 43 ~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 43 IAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33445555544444443
No 365
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.14 E-value=1.7e+02 Score=19.83 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=9.3
Q ss_pred HHHHHhhcCchHHHHHHHHHH
Q 015246 107 MLNGLCKNRYTDNALRMFRGL 127 (410)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~ 127 (410)
++.-|...|+.++|.+.++++
T Consensus 13 ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 13 LLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHh
Confidence 334444444444444444444
No 366
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=24.04 E-value=2.2e+02 Score=21.95 Aligned_cols=55 Identities=15% Similarity=0.035 Sum_probs=30.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCC-------ChHhHHHHHHHHH--hcCChhHHHHHHHHH
Q 015246 38 IAGATRNSLLSCSLDLLDEMLEMGIPP-------DVWSYNSLMHCLF--QLGKPDEANRVFQDM 92 (410)
Q Consensus 38 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 92 (410)
+...+..|+.+.+..+++...+.+... +..-.+.|..+.. +.|+.+-+.-+++.-
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 334456788888777777766554322 2222333433332 246666666666653
No 367
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=23.86 E-value=2.9e+02 Score=22.36 Aligned_cols=59 Identities=10% Similarity=0.224 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhHHHHHHHHHhhcCc--hHHHHHHHHHHHh
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPCTATFNIMLNGLCKNRY--TDNALRMFRGLQK 129 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 129 (410)
...++.-|...|+.++|...++++.... ........++......++ .+.+-.++..+..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4567788888899999999888864221 112222233333333332 3345556666653
No 368
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.71 E-value=3e+02 Score=22.48 Aligned_cols=27 Identities=22% Similarity=0.038 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC
Q 015246 346 SSMVHNLCKAKRLPSASKLLLSCLKSG 372 (410)
Q Consensus 346 ~~l~~~~~~~~~~~~A~~~~~~~~~~~ 372 (410)
...+....+.+++..|..+.+++++.+
T Consensus 211 r~AM~~a~K~KNy~tAa~fArrLLel~ 237 (325)
T 3mv2_A 211 QVAMSQHFKHKNFLQASYFAGEFLKII 237 (325)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 334445556666666666666666554
No 369
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=23.63 E-value=98 Score=16.84 Aligned_cols=17 Identities=6% Similarity=0.255 Sum_probs=10.4
Q ss_pred CChHHHHHHHHHHHHcC
Q 015246 10 VSFDAGYTILNRMREAG 26 (410)
Q Consensus 10 g~~~~a~~~~~~~~~~~ 26 (410)
.|+..|+++++.+.+.|
T Consensus 7 RDv~RaiELle~lq~sg 23 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTG 23 (53)
T ss_dssp HHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 35566666666666655
No 370
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.44 E-value=1.2e+02 Score=20.87 Aligned_cols=15 Identities=20% Similarity=0.333 Sum_probs=6.3
Q ss_pred HhcCChhHHHHHHHH
Q 015246 77 FQLGKPDEANRVFQD 91 (410)
Q Consensus 77 ~~~~~~~~a~~~~~~ 91 (410)
+..|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 334444444444433
No 371
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.41 E-value=1.9e+02 Score=22.04 Aligned_cols=23 Identities=4% Similarity=-0.081 Sum_probs=12.2
Q ss_pred HHHhccchhHHHHHHHHHHHcCC
Q 015246 180 CCFRNRKYKLGLEILSAMKRKGY 202 (410)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~ 202 (410)
..+..|+.+....+++.+.+.+.
T Consensus 8 ~A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 8 SVVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC
Confidence 33455666655555555555543
No 372
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.30 E-value=2.3e+02 Score=21.03 Aligned_cols=185 Identities=11% Similarity=-0.058 Sum_probs=92.5
Q ss_pred hhhhhhcCChHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC---C-CChHhHHHHHHHHH
Q 015246 3 IDAYCQFVSFDAGYTILNRM-REAGISPDVVTYNSLIAGATRNSLLSCSLDLLDEMLEMGI---P-PDVWSYNSLMHCLF 77 (410)
Q Consensus 3 i~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~-~~~~~~~~l~~~~~ 77 (410)
+...++.|+.+.+..+++.- ...+ ..+..-++. +...+..|+.+-+..+++.-..... . .+..-. +.+...+
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~-t~L~~A~ 83 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETA-LHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ-TALHIAV 83 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCH-HHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTC-CHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCH-HHHHHHcCCHHHHHHHHHcCchhccccccccCCCCc-CHHHHHH
Confidence 44566788887777777651 1111 223322222 3344566777766666654322100 0 011122 2344455
Q ss_pred hcCChhHHHHHHHHHhcCCCCCChh---------------HHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHH--HH
Q 015246 78 QLGKPDEANRVFQDMICGDLTPCTA---------------TFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVT--YN 140 (410)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 140 (410)
..|+.+-+.-+++. |..++.. .-.+.+...+..|..+-+ +.+.+.|..++... -.
T Consensus 84 ~~~~~~~v~~Ll~~----g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~ga~~~~~d~~g~ 155 (232)
T 2rfa_A 84 INQNVNLVRALLAR----GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIV----RLLIEHGADIRAQDSLGN 155 (232)
T ss_dssp HTTCHHHHHHHHHT----TCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTSC
T ss_pred HcCCHHHHHHHHhC----CCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCCCCCCC
Confidence 67777655555543 3232221 112233444556665444 44445555443221 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCC---------cHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 015246 141 ILIKGLCKAGRLRTARWILKELGDSGHAP---------NAITYTTIMKCCFRNRKYKLGLEILSAMKR 199 (410)
Q Consensus 141 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (410)
+-+...+..|+.+-+..+++.+.+.|..+ |....+ -+......|+.+-+.-+++.-..
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCcc
Confidence 34556677888888877777777765432 222222 24444567777766666655443
No 373
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.20 E-value=3.1e+02 Score=22.49 Aligned_cols=148 Identities=12% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHHHHHcCCCCChhhHHHHHHHHHHc
Q 015246 140 NILIKGLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSAMKRKGYTFDGFGYCTVIAAFVKI 219 (410)
Q Consensus 140 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (410)
..++.-|...|+.++|...++++......+...........-.+....+.+..++..+.+.++-+.......+-..+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Q ss_pred C----CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCChhHH
Q 015246 220 G----RLKEATDYMEQMVTDGVQLDIVSYNTLINLYCKEGKLEAAYLLLDEMEKQGFECDKYTHTILIDGLCKAGNIKGA 295 (410)
Q Consensus 220 ~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 295 (410)
. |...|...+..+...-+.-.......++.... +..... .........++..+.+....+.+
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~--~~l~~~------------g~~~~fl~~vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREIT--KPLRPL------------GKAASLLLEILGLLCKSMGPKKV 160 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHT--TTHHHH------------TCHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHH--Hhhhcc------------chHHHHHHHHHHHHHHHcCHHHH
Q ss_pred HHHHHH
Q 015246 296 RLHLEY 301 (410)
Q Consensus 296 ~~~~~~ 301 (410)
..+|.+
T Consensus 161 ~~~~~~ 166 (339)
T 1ug3_A 161 GTLWRE 166 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 374
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=22.68 E-value=2.5e+02 Score=23.04 Aligned_cols=44 Identities=2% Similarity=0.017 Sum_probs=27.7
Q ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 015246 263 LLDEMEKQGFECDKYTHTILIDGLCKAGNIKGARLHLEYMNKIG 306 (410)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 306 (410)
+++.+.+.|+.|...++..++..+.+.=.++.+.++|+.+...|
T Consensus 231 L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g 274 (345)
T 2qfz_A 231 VHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEP 274 (345)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTST
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCC
Confidence 34444555666666666666666666666677777777776654
No 375
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.68 E-value=5.5e+02 Score=24.78 Aligned_cols=167 Identities=10% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHhcC--CCCCChhHHHHHHHHHhhcCchHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 015246 70 NSLMHCLFQLGK---PDEANRVFQDMICG--DLTPCTATFNIMLNGLCKNRYTDNALRMFRGLQKHGFVPELVTYNILIK 144 (410)
Q Consensus 70 ~~l~~~~~~~~~---~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 144 (410)
..++...|..|. .+.|.+.|+..... +.+..+..-......-.+.|..++-..+++.+... .+..--..++.
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHhccchhHHHHHHHH---HHHcCCCCChhhHHHHHHHHHHcCC
Q 015246 145 GLCKAGRLRTARWILKELGDSGHAPNAITYTTIMKCCFRNRKYKLGLEILSA---MKRKGYTFDGFGYCTVIAAFVKIGR 221 (410)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~ 221 (410)
+++...+.....++++.....+..........+..........+.+.+.+.. .....+......+..++......-.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~~ 846 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRFS 846 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTCC
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 015246 222 LKEATDYMEQMVTDGVQL 239 (410)
Q Consensus 222 ~~~a~~~~~~~~~~~~~~ 239 (410)
.++-.+-++...+.....
T Consensus 847 t~~~~~~~~~f~~~~~~~ 864 (909)
T 4fke_A 847 SEFELQQLEQFKKNNMDV 864 (909)
T ss_dssp SHHHHHHHHHHHTTCSSS
T ss_pred CHHHHHHHHHHHhhCCcc
No 376
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.37 E-value=3.6e+02 Score=22.50 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=16.5
Q ss_pred hhhhhhhcCChHHHHHHHHHHH
Q 015246 2 LIDAYCQFVSFDAGYTILNRMR 23 (410)
Q Consensus 2 li~~~~~~g~~~~a~~~~~~~~ 23 (410)
+|.-|...|++++|...++++.
T Consensus 18 ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 18 VVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHhC
Confidence 5666777788888888877775
No 377
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=21.27 E-value=1.7e+02 Score=18.60 Aligned_cols=45 Identities=13% Similarity=0.074 Sum_probs=21.3
Q ss_pred cCChHHHHHHHHhhccC----CchhHHHHHHHH-----HhcCChhhHHHHHHHHHH
Q 015246 324 DGKIDHAINVFESMEVK----DSFTYSSMVHNL-----CKAKRLPSASKLLLSCLK 370 (410)
Q Consensus 324 ~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~ 370 (410)
.|++=+|-++++..-.. ....|..+|... .+.|+. |..++.+...
T Consensus 14 ~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 14 AGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 36666666665554332 223344444321 134444 5555555554
No 378
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.43 E-value=3e+02 Score=23.90 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC--------hhHHH-HHHHHHhhcCchHHHHHHHHHHHh
Q 015246 69 YNSLMHCLFQLGKPDEANRVFQDMICGDLTPC--------TATFN-IMLNGLCKNRYTDNALRMFRGLQK 129 (410)
Q Consensus 69 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~ 129 (410)
.+.+...|.+.|+...+..++..+...+..|+ ..+|. .+.+.+...+++.+|.+.+..+.+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 34444555555555555555554444332111 11222 233444455566666555555443
No 379
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.08 E-value=2.6e+02 Score=21.60 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=11.2
Q ss_pred HHhccchhHHHHHHHHHHHcC
Q 015246 181 CFRNRKYKLGLEILSAMKRKG 201 (410)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~ 201 (410)
.+..|+.+.+..+++...+.+
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~ 40 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSK 40 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSC
T ss_pred HHHcCCHHHHHHHHHHHhhcc
Confidence 344566665555555554443
Done!