Query 015248
Match_columns 410
No_of_seqs 140 out of 295
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:30:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05633 DUF793: Protein of un 100.0 2.2E-66 4.7E-71 519.9 35.4 321 11-331 6-389 (389)
2 PF03087 DUF241: Arabidopsis p 100.0 2.5E-31 5.3E-36 254.0 22.4 224 67-330 2-231 (231)
3 PF05055 DUF677: Protein of un 99.9 2E-26 4.4E-31 230.0 20.9 294 36-331 1-336 (336)
4 PHA01750 hypothetical protein 72.1 21 0.00046 27.8 6.7 27 292-318 44-70 (75)
5 KOG0994 Extracellular matrix g 63.1 44 0.00095 39.4 9.7 74 231-304 1168-1246(1758)
6 PHA02047 phage lambda Rz1-like 61.6 55 0.0012 27.5 7.6 59 290-352 34-92 (101)
7 TIGR02894 DNA_bind_RsfA transc 61.2 1.3E+02 0.0029 27.5 11.0 43 286-328 114-156 (161)
8 PF10805 DUF2730: Protein of u 59.9 54 0.0012 27.7 7.7 55 262-316 44-98 (106)
9 PRK11637 AmiB activator; Provi 58.3 2.4E+02 0.0051 29.4 14.6 23 292-314 98-120 (428)
10 PF10157 DUF2365: Uncharacteri 57.8 1.5E+02 0.0032 26.9 10.9 73 40-126 61-133 (149)
11 PF10018 Med4: Vitamin-D-recep 57.5 1.2E+02 0.0026 28.1 10.3 44 292-335 24-67 (188)
12 PF07956 DUF1690: Protein of U 53.6 67 0.0015 28.7 7.6 89 238-337 35-126 (142)
13 PRK04654 sec-independent trans 45.7 48 0.001 31.7 5.6 16 204-219 9-24 (214)
14 PF01601 Corona_S2: Coronaviru 43.6 1.1E+02 0.0025 33.5 8.7 67 262-333 268-339 (610)
15 PF08580 KAR9: Yeast cortical 43.5 5.3E+02 0.011 29.1 18.2 32 61-100 42-76 (683)
16 PF02403 Seryl_tRNA_N: Seryl-t 42.8 92 0.002 25.8 6.4 33 285-317 69-101 (108)
17 PF10393 Matrilin_ccoil: Trime 41.9 58 0.0012 23.7 4.3 25 289-313 22-46 (47)
18 PF06825 HSBP1: Heat shock fac 39.4 82 0.0018 23.6 4.9 24 288-311 26-49 (54)
19 KOG3684 Ca2+-activated K+ chan 39.3 1.1E+02 0.0025 32.5 7.6 64 257-320 400-464 (489)
20 PF04380 BMFP: Membrane fusoge 38.5 1E+02 0.0022 24.7 5.7 32 280-311 47-78 (79)
21 PLN02320 seryl-tRNA synthetase 38.3 98 0.0021 33.4 7.2 30 293-322 133-162 (502)
22 KOG0994 Extracellular matrix g 37.3 8.3E+02 0.018 29.6 23.8 64 107-174 1561-1624(1758)
23 PF15546 DUF4653: Domain of un 35.8 87 0.0019 29.7 5.5 44 294-337 190-233 (239)
24 PF07889 DUF1664: Protein of u 35.5 2.5E+02 0.0054 24.7 8.1 61 260-320 50-112 (126)
25 PF05531 NPV_P10: Nucleopolyhe 35.3 2.1E+02 0.0045 23.0 6.9 29 291-319 36-64 (75)
26 PF11172 DUF2959: Protein of u 35.1 1.9E+02 0.0041 27.5 7.7 57 263-319 42-100 (201)
27 PF04508 Pox_A_type_inc: Viral 34.8 39 0.00085 21.0 2.1 19 300-318 4-22 (23)
28 TIGR03185 DNA_S_dndD DNA sulfu 34.1 3.9E+02 0.0085 29.5 11.4 56 258-313 396-451 (650)
29 KOG3335 Predicted coiled-coil 33.5 2E+02 0.0044 26.7 7.5 55 285-339 101-155 (181)
30 PF07889 DUF1664: Protein of u 33.3 3.4E+02 0.0073 23.9 10.4 54 259-314 67-120 (126)
31 PF11932 DUF3450: Protein of u 32.7 3.7E+02 0.008 25.8 9.8 18 258-275 54-71 (251)
32 PRK00708 sec-independent trans 32.6 1.4E+02 0.003 28.6 6.5 17 203-219 8-24 (209)
33 PF03962 Mnd1: Mnd1 family; I 32.4 3.3E+02 0.0072 25.3 9.0 16 261-276 77-92 (188)
34 PRK05431 seryl-tRNA synthetase 32.2 1.4E+02 0.003 31.4 7.2 28 288-315 71-98 (425)
35 KOG4191 Histone acetyltransfer 32.2 2.5E+02 0.0054 29.9 8.7 27 300-326 442-468 (516)
36 PF10392 COG5: Golgi transport 32.1 3.4E+02 0.0073 23.5 8.8 43 287-329 69-111 (132)
37 PF05377 FlaC_arch: Flagella a 31.4 1.7E+02 0.0036 22.1 5.4 15 260-274 7-21 (55)
38 PF14723 SSFA2_C: Sperm-specif 31.4 3E+02 0.0065 25.6 8.2 62 259-320 104-175 (179)
39 COG5074 t-SNARE complex subuni 31.2 3.2E+02 0.0069 26.8 8.6 104 255-364 20-123 (280)
40 TIGR02338 gimC_beta prefoldin, 30.4 2.6E+02 0.0056 23.5 7.3 44 288-331 65-108 (110)
41 PLN02372 violaxanthin de-epoxi 29.4 2.8E+02 0.0061 29.3 8.5 33 301-333 407-439 (455)
42 PLN02678 seryl-tRNA synthetase 29.3 1.7E+02 0.0037 31.1 7.2 29 286-314 74-102 (448)
43 KOG0971 Microtubule-associated 28.9 2.3E+02 0.0049 32.9 8.2 40 286-326 451-490 (1243)
44 PRK11637 AmiB activator; Provi 28.7 6.1E+02 0.013 26.4 11.2 61 260-322 75-135 (428)
45 PRK09343 prefoldin subunit bet 28.5 2.1E+02 0.0046 24.6 6.6 47 288-334 69-115 (121)
46 TIGR02132 phaR_Bmeg polyhydrox 28.4 1.8E+02 0.0039 27.1 6.3 67 254-320 29-102 (189)
47 PHA01750 hypothetical protein 28.4 2.1E+02 0.0045 22.4 5.6 13 288-300 61-73 (75)
48 PF09177 Syntaxin-6_N: Syntaxi 28.1 2.6E+02 0.0056 22.9 6.7 27 288-314 37-63 (97)
49 PF05377 FlaC_arch: Flagella a 26.5 2.4E+02 0.0052 21.3 5.5 22 292-313 16-37 (55)
50 PF03670 UPF0184: Uncharacteri 26.3 3.6E+02 0.0079 22.0 7.7 46 288-333 31-76 (83)
51 COG1579 Zn-ribbon protein, pos 26.2 4.4E+02 0.0096 25.7 8.9 23 309-331 94-116 (239)
52 PF13887 MRF_C1: Myelin gene r 26.0 54 0.0012 22.5 1.8 22 290-311 14-35 (36)
53 COG3352 FlaC Putative archaeal 25.9 2.7E+02 0.0058 25.4 6.7 47 286-332 68-114 (157)
54 PF06419 COG6: Conserved oligo 25.6 4.7E+02 0.01 28.9 10.1 72 257-337 35-108 (618)
55 PF02252 PA28_beta: Proteasome 25.6 5E+02 0.011 23.4 9.5 86 235-338 10-96 (150)
56 TIGR00414 serS seryl-tRNA synt 25.3 2.4E+02 0.0051 29.6 7.4 31 286-316 72-102 (418)
57 PF10186 Atg14: UV radiation r 25.3 4.5E+02 0.0097 25.2 9.1 15 350-364 207-221 (302)
58 COG1579 Zn-ribbon protein, pos 24.7 6.4E+02 0.014 24.6 9.7 18 257-274 86-103 (239)
59 PF15290 Syntaphilin: Golgi-lo 24.3 5E+02 0.011 26.1 8.8 38 288-325 122-160 (305)
60 PF06825 HSBP1: Heat shock fac 24.2 1.6E+02 0.0035 22.1 4.3 30 288-317 19-48 (54)
61 PF00429 TLV_coat: ENV polypro 24.0 1.8E+02 0.004 31.8 6.5 40 288-327 426-465 (561)
62 COG1382 GimC Prefoldin, chaper 23.8 3E+02 0.0065 24.0 6.5 45 289-333 69-113 (119)
63 PF05529 Bap31: B-cell recepto 23.4 3.7E+02 0.0081 24.6 7.7 30 288-317 159-188 (192)
64 KOG0995 Centromere-associated 22.9 1E+03 0.023 26.2 12.6 30 61-90 109-142 (581)
65 COG1730 GIM5 Predicted prefold 22.6 2.2E+02 0.0048 25.6 5.7 21 292-312 110-130 (145)
66 PRK02119 hypothetical protein; 22.5 3.9E+02 0.0084 21.0 7.0 32 291-322 24-55 (73)
67 PF07106 TBPIP: Tat binding pr 21.6 2.3E+02 0.0049 25.6 5.7 52 260-311 86-137 (169)
68 KOG1760 Molecular chaperone Pr 21.5 5.7E+02 0.012 22.6 8.6 73 235-316 24-114 (131)
69 KOG0978 E3 ubiquitin ligase in 21.5 1.2E+03 0.026 26.4 12.4 28 363-392 644-671 (698)
70 PF05531 NPV_P10: Nucleopolyhe 20.7 3.4E+02 0.0073 21.8 5.7 31 288-318 23-56 (75)
71 COG3264 Small-conductance mech 20.4 1.2E+03 0.027 26.9 12.0 75 287-365 143-217 (835)
72 KOG4421 Uncharacterized conser 20.2 4.8E+02 0.01 27.3 8.0 35 293-327 233-269 (637)
73 PF02725 Paramyxo_NS_C: Non-st 20.1 1.1E+02 0.0023 28.2 3.0 26 58-83 109-134 (165)
74 PF05739 SNARE: SNARE domain; 20.0 3.6E+02 0.0077 19.7 6.9 23 305-327 33-55 (63)
75 PRK01919 tatB sec-independent 20.0 3.4E+02 0.0073 25.2 6.3 16 204-219 9-24 (169)
No 1
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=100.00 E-value=2.2e-66 Score=519.90 Aligned_cols=321 Identities=39% Similarity=0.614 Sum_probs=289.2
Q ss_pred CCCCCCcccccC------CCCCC--CCCcchhhHHHHHHHHHHHHhhhCCCCC--CCcccHHHHHHHHHHHHHHHHHHHH
Q 015248 11 FFPFGNPFRMMS------PKGSR--LSPKLVSLLADFEETLAERLRKLMPKDK--DDILNLSWMRLAMESLCETHNVIKD 80 (410)
Q Consensus 11 ~~~~g~~~~~~~------~~~~~--l~~~~~p~l~~Fd~~L~~rl~~L~~s~~--~~~lSlswl~~al~~L~~~h~~v~~ 80 (410)
|.+||+++.+++ |..+| .++.+++.++.||+++++||++|.++.. +++||++||+++|++|+.+|++|+.
T Consensus 6 ~~~~~~s~ls~rr~~~~~~~~~~~~~~~~~~~~L~~Fq~~va~rl~~L~~~~~~~~~~LSL~W~~~~ld~~l~~~~efr~ 85 (389)
T PF05633_consen 6 YQGFGRSLLSLRRDQVHSMSHNHEQEAESLEAELEAFQRHVAERLSDLSPSSKDSDDFLSLSWMRKALDSFLCCHEEFRA 85 (389)
T ss_pred cccccchhhhccccCCCCCCCCcccccccchhhHHHHHHHHHHHHHHhccCcCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 445888887765 33333 3355677999999999999999998853 6899999999999999999999999
Q ss_pred HHhhcCC-CCC-chhhhhHHHHhhhhhhHHhHhhHHHHHHHhhhhhHHHHHHHHhhccCC---CchhHHHHHhhhHHHHH
Q 015248 81 LITELEL-PVS-DWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSS---SPTQFGRACSSLDNWRE 155 (410)
Q Consensus 81 Li~~l~l-p~~-~~~~kwVdeyLD~SlkLLDvCna~~d~L~~lr~~~~~Lq~al~~l~~~---~~~~~~Ra~~~L~~~~~ 155 (410)
||++++. |++ +|++|||+||||+|||+||||||++++|+++++|++.+++|+|.+++. ++++++||+++|.+|..
T Consensus 86 li~~~~~~~~s~~~~dk~v~eylD~sVKlLDvCNA~~~gi~~lr~~~~ll~~al~~L~~~~~~~~~~~rRAr~aL~dl~~ 165 (389)
T PF05633_consen 86 LITNLRDLPLSKPPDDKWVDEYLDRSVKLLDVCNAIRDGISQLRQWQLLLQIALHALDSSRPLGEGQLRRARKALSDLKI 165 (389)
T ss_pred HHhcccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 9999987 988 799999999999999999999999999999999999999999999876 78999999999999986
Q ss_pred hh-----------hccCccch--------------------------------HHHHHHHHHhhcCCccccccchhhHHH
Q 015248 156 HI-----------SSKNPRVE--------------------------------SCRSILDNLVASLDLPKVKNSAKGKVL 192 (410)
Q Consensus 156 ~~-----------~s~n~~i~--------------------------------k~~~~Lk~~~~~L~~pK~~~s~k~~~l 192 (410)
.| .++|+.++ +|.++|+.|+++|..||++++++++++
T Consensus 166 ~~~~~~~~~~~~~~~rnrs~~r~~~~~~~~~~s~~~~~~~~~rsls~~vsr~wsa~~~Lq~m~~nL~~Pk~~esak~~gL 245 (389)
T PF05633_consen 166 AMLDDKDSGSSGGSHRNRSFGRSNSSGRRSSSSSGSRSAGHFRSLSWSVSRNWSAARQLQAMGENLVLPKGKESAKGRGL 245 (389)
T ss_pred HHhcccccCcccccccccccccccCCCCCCCCccccCCcccchhhhhhhhhhhhhHHHHHHHHhcCCCCCCccccccchH
Confidence 66 13343222 378899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccc-cccc-cCCCCCchHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHH
Q 015248 193 MRAMYGVKVLTVFVCSIFAAAFSGSAKNL-LELN-VSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVK 270 (410)
Q Consensus 193 ~~~Ly~v~~vTv~V~~vLlaals~~~~~l-~~l~-vp~~~~Ws~sl~~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~ 270 (410)
++++|+|++||+||||+|++||+|+++.+ .+++ +|++++|+.+|..||++|++|+++++++|+++.++||++||++++
T Consensus 246 ~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP~~~~WA~s~~~LQ~rI~eEikkk~~kgs~gLLkEl~~ve~~vr 325 (389)
T PF05633_consen 246 LRAMYGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVPRQFSWAPSFISLQERINEEIKKKERKGSCGLLKELQQVEASVR 325 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeecCCccccCCCCCCccccccchHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999998755 5898 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh---ccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 015248 271 KLYEVIQN---EVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 331 (410)
Q Consensus 271 ~L~~~i~~---~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l 331 (410)
+|++.++. +..+|+++++++.|+||++.+++|++|||+|++|||++||+||++|+++||.|
T Consensus 326 ~L~el~d~~~~p~~~e~~~ev~~~V~EL~~~~~~L~~GLdpLerqVre~Fh~IV~sR~elLd~l 389 (389)
T PF05633_consen 326 ELHELIDSFQFPLEEEKEEEVREAVEELARVCEALSQGLDPLERQVREVFHRIVRSRTELLDSL 389 (389)
T ss_pred HHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhHHHHhcC
Confidence 99988876 45566778999999999999999999999999999999999999999999975
No 2
>PF03087 DUF241: Arabidopsis protein of unknown function; InterPro: IPR004320 This family represents plant proteins of unknown function.
Probab=100.00 E-value=2.5e-31 Score=254.00 Aligned_cols=224 Identities=21% Similarity=0.339 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC------chhhhhHHHHhhhhhhHHhHhhHHHHHHHhhhhhHHHHHHHHhhccCCCc
Q 015248 67 AMESLCETHNVIKDLITELELPVS------DWDEKWIDVYLDISVNLLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSP 140 (410)
Q Consensus 67 al~~L~~~h~~v~~Li~~l~lp~~------~~~~kwVdeyLD~SlkLLDvCna~~d~L~~lr~~~~~Lq~al~~l~~~~~ 140 (410)
.|..|.++|+++.+|+ ++|.+ +. +||||++||+|++|||+|++++|.+.++|++++.||+|+|+.++ ++
T Consensus 2 gL~~L~~Ly~~~~ell---~lp~tq~al~~~~-~k~ve~lLd~sL~LLD~c~~~rd~ll~lKe~v~eLqsalRRr~~-~~ 76 (231)
T PF03087_consen 2 GLSGLKDLYECLEELL---QLPSTQQALSHHQ-EKWVEELLDGSLRLLDACGTFRDALLQLKEHVQELQSALRRRDD-GS 76 (231)
T ss_pred chhHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hh
Confidence 5788999999999999 99977 34 79999999999999999999999999999999999999999973 22
Q ss_pred hhHHHHHhhhHHHHHhhhccCccchHHHHHHHHHhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q 015248 141 TQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKN 220 (410)
Q Consensus 141 ~~~~Ra~~~L~~~~~~~~s~n~~i~k~~~~Lk~~~~~L~~pK~~~s~k~~~l~~~Ly~v~~vTv~V~~vLlaals~~~~~ 220 (410)
+.-..++|..+++.+ ++.+.|+...|+.+.++ ..+.......+..++.++++++.+|+.+|.+++.+++.|...
T Consensus 77 --~~~~i~sy~~~rKk~---kK~i~K~~~~lk~~~~~-~~~~~~~~~~~~~vv~~l~ea~~~t~si~~sll~~ls~~~~~ 150 (231)
T PF03087_consen 77 --IESEIASYIRSRKKA---KKEIAKLLRSLKRMSNK-SSSSNDDDEHLSAVVRVLREAREITVSIFESLLSFLSSPSKK 150 (231)
T ss_pred --HHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcc-cCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 334445555666666 56888999999999876 222111111245689999999999999999999999986543
Q ss_pred ccccccCCCCCchHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Q 015248 221 LLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRAD 300 (410)
Q Consensus 221 l~~l~vp~~~~Ws~sl~~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le 300 (410)
|+..+|+......+++..++.. ....+|++.++.+... +. +.++..++++|
T Consensus 151 ------~~~~~wslvsk~~~~~~~~~~~-------~~~~~e~~~~d~~~~~---------~~-------e~~~~~~~~Le 201 (231)
T PF03087_consen 151 ------SKSSKWSLVSKLMQKKRSCDSS-------EENRNEFEKVDAALKS---------DE-------EEVQNAQKRLE 201 (231)
T ss_pred ------ccccchhHHHHHHhcccccchh-------HHHHHHHHHHHHHhhh---------hh-------HHHHHHHHHHH
Confidence 5668899766666665432111 1257899999877542 11 23778899999
Q ss_pred HHhhchHHHHHHHhHHHHHHHHhHHHHHhh
Q 015248 301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCN 330 (410)
Q Consensus 301 ~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~ 330 (410)
+||.+|++||.++|++||+||++|++||||
T Consensus 202 ~LE~~Ie~lE~glE~vFR~LIktRVSLLNI 231 (231)
T PF03087_consen 202 ELEECIEELEEGLECVFRRLIKTRVSLLNI 231 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999997
No 3
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=99.95 E-value=2e-26 Score=229.96 Aligned_cols=294 Identities=19% Similarity=0.304 Sum_probs=223.9
Q ss_pred HHHHHHHHHHHHhhhCCCCC--C--CcccHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhh----hhHHHHhhhhhhH
Q 015248 36 LADFEETLAERLRKLMPKDK--D--DILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDE----KWIDVYLDISVNL 107 (410)
Q Consensus 36 l~~Fd~~L~~rl~~L~~s~~--~--~~lSlswl~~al~~L~~~h~~v~~Li~~l~lp~~~~~~----kwVdeyLD~SlkL 107 (410)
|++||+.|++|+++++.+.+ . ..+|++++.+..++|+++++++.++|++++..+ |.+ .+|++|||.|.+.
T Consensus 1 l~~fd~~l~~~t~~~i~sl~~~~~~~s~s~~s~~~~t~~Lle~~Qevv~~ile~~~di--~~~~~L~~Lv~~YFd~S~~a 78 (336)
T PF05055_consen 1 LQSFDSSLQERTNRVISSLATGVETRSLSFDSLKEVTECLLEMNQEVVKVILECKKDI--WKNPELFRLVSDYFDSSLEA 78 (336)
T ss_pred CCCccHHHHHHHHHHHHHhhhccccCCCChHHHHHHHHHHhCCChHHHHHHHHHHHHh--hcChhHHHHHHHHHHhhHHH
Confidence 46899999999999998842 2 357899999999999999999999999988773 443 5999999999999
Q ss_pred HhHhhHHHHHHHhhhhhHHHHHHHHhhccCCCch-----hHHHHHhhhHHHHHhhhccCccchH-HHHHHHH-------H
Q 015248 108 LDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPT-----QFGRACSSLDNWREHISSKNPRVES-CRSILDN-------L 174 (410)
Q Consensus 108 LDvCna~~d~L~~lr~~~~~Lq~al~~l~~~~~~-----~~~Ra~~~L~~~~~~~~s~n~~i~k-~~~~Lk~-------~ 174 (410)
+|+|+++..+|.++|.+++.++.|+..++..+.. .-.+..++|.++.+|...+||.... ...+++. |
T Consensus 79 ~~~C~~L~k~I~~aR~~~~~I~~al~~~~~e~~~~d~g~~~~~~~~tl~eL~~F~~~~NPFs~~~~~~~F~~i~~~~~~L 158 (336)
T PF05055_consen 79 SDFCEALLKCIHRARDNYLPIRRALKQFEKESLDTDVGVSQKKYDKTLEELKKFKAAGNPFSDEEFFHQFQSIHDQQSSL 158 (336)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccccccccccchhHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999754321 1245567889999999999996544 3333222 2
Q ss_pred hhcCCcc-----ccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccc-ccccCCC--CCchHHHHHHHHH-H
Q 015248 175 VASLDLP-----KVKNSAKG-KVLMRAMYGVKVLTVFVCSIFAAAFSGSAK-NLL-ELNVSDT--LPWAPAFSALQAN-V 243 (410)
Q Consensus 175 ~~~L~~p-----K~~~s~k~-~~l~~~Ly~v~~vTv~V~~vLlaals~~~~-~l~-~l~vp~~--~~Ws~sl~~Lq~r-V 243 (410)
.++|... |+....++ +.++++++.+.++++.|+++++++++.|+. .++ .+.+|-. ++|...+++-+.. +
T Consensus 159 l~kL~~~k~Kl~kklk~~r~~~kvs~v~fvaa~~aV~i~svv~aa~a~~~vv~~aa~~a~P~~~~gkw~~~~~~k~~~al 238 (336)
T PF05055_consen 159 LEKLDSRKKKLRKKLKLVRTWRKVSNVCFVAAFVAVAIASVVAAAHAVPAVVALAAALAAPIGSVGKWCGSLWKKYEEAL 238 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHccchHHHhHHHHHHHHHHHHHH
Confidence 2232211 22223333 568899999999999999999999977663 232 2334543 4587765433221 1
Q ss_pred H--HHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHhhc-------cc-hHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 015248 244 N--AEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNE-------VD-TVEEELLQKSVLDLGKRADNLSQGLDHLTKAV 313 (410)
Q Consensus 244 ~--eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i~~~-------~~-~e~~e~v~~~veeL~~~le~Le~gle~Le~~V 313 (410)
. .+.-....+|++++.++|+.|...|.+|...|+.. +. .++...+++.|++++++.+.|.+-||+||+++
T Consensus 239 ~~~~~~l~~aakGtyI~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv 318 (336)
T PF05055_consen 239 KKQKEQLDAAAKGTYILIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHV 318 (336)
T ss_pred HHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 11111223799999999999999999999998762 11 11234688999999999999999999999999
Q ss_pred hHHHHHHHHhHHHHHhhh
Q 015248 314 DGFFKIVLSGRDALLCNL 331 (410)
Q Consensus 314 d~lFr~LI~~R~~LL~~l 331 (410)
.-+|+.|-++|..+|+-|
T Consensus 319 ~lC~~tInrAR~lVlq~I 336 (336)
T PF05055_consen 319 YLCFKTINRARTLVLQEI 336 (336)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999999753
No 4
>PHA01750 hypothetical protein
Probab=72.06 E-value=21 Score=27.79 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHHHH
Q 015248 292 VLDLGKRADNLSQGLDHLTKAVDGFFK 318 (410)
Q Consensus 292 veeL~~~le~Le~gle~Le~~Vd~lFr 318 (410)
.++|+..++++....|.++++|.++-+
T Consensus 44 LdNL~~ei~~~kikqDnl~~qv~eik~ 70 (75)
T PHA01750 44 LDNLKTEIEELKIKQDELSRQVEEIKR 70 (75)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 5
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=63.12 E-value=44 Score=39.35 Aligned_cols=74 Identities=9% Similarity=0.257 Sum_probs=32.5
Q ss_pred CchHHHHHHHHHHHHHHHh---hhhcCcc-hhhhHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHHhh
Q 015248 231 PWAPAFSALQANVNAEVRN---ILSSGRA-TVLNELEAVDGSVKKLYEVIQN-EVDTVEEELLQKSVLDLGKRADNLSQ 304 (410)
Q Consensus 231 ~Ws~sl~~Lq~rV~eE~~~---~~~~g~~-~~l~Ele~Vdaav~~L~~~i~~-~~~~e~~e~v~~~veeL~~~le~Le~ 304 (410)
.|-..+.+|+.|...=+.+ .+..|.. +--.+|..++.-++..+..+.. .+..+..+.+....++|++.+.++.+
T Consensus 1168 ~WD~il~~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e 1246 (1758)
T KOG0994|consen 1168 TWDAILQELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTE 1246 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5776676666654221111 1112222 2235666666666666555432 12222333344444444444443333
No 6
>PHA02047 phage lambda Rz1-like protein
Probab=61.60 E-value=55 Score=27.46 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhhcCCCCCCcccCCCcchhHHh
Q 015248 290 KSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAEPVRRK 352 (410)
Q Consensus 290 ~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~~~~~~~~~~~~~~~~~~~~~ 352 (410)
+.++.+...+|.++..+..+.++|+.+-.+--+.|.++++-|... +.|.+.++.+-+..
T Consensus 34 ~~a~~la~qLE~a~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~~n----~~WaD~PVPpaV~~ 92 (101)
T PHA02047 34 EEAKRQTARLEALEVRYATLQRHVQAVEARTNTQRQEVDRALDQN----RPWADRPVPPAVVD 92 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcccCCCChHHHH
Confidence 447788888899999999999999999999999999999998543 44555555555543
No 7
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=61.20 E-value=1.3e+02 Score=27.50 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHH
Q 015248 286 ELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALL 328 (410)
Q Consensus 286 e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL 328 (410)
+.++..++.|.+..+.|...+..+++.-..|+..+=++|...+
T Consensus 114 ~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 114 ESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888888888888888889999999999999998553
No 8
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=59.90 E-value=54 Score=27.65 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 015248 262 LEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGF 316 (410)
Q Consensus 262 le~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~l 316 (410)
+...+.-+..+...++.-=+.++...++..+.++...+..++..+++++.+++-+
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444421223445677778888888888888887777766644
No 9
>PRK11637 AmiB activator; Provisional
Probab=58.33 E-value=2.4e+02 Score=29.44 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhchHHHHHHHh
Q 015248 292 VLDLGKRADNLSQGLDHLTKAVD 314 (410)
Q Consensus 292 veeL~~~le~Le~gle~Le~~Vd 314 (410)
++++++.++.++..|+.+++.++
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 10
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=57.83 E-value=1.5e+02 Score=26.86 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhhhhHHHHhhhhhhHHhHhhHHHHHHH
Q 015248 40 EETLAERLRKLMPKDKDDILNLSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLT 119 (410)
Q Consensus 40 d~~L~~rl~~L~~s~~~~~lSlswl~~al~~L~~~h~~v~~Li~~l~lp~~~~~~kwVdeyLD~SlkLLDvCna~~d~L~ 119 (410)
=..+++.++.|..+. ..++.+|...+--..++|++...-+ ..-||......-.|+.-|..+.+.+.
T Consensus 61 a~~ia~svd~ll~~L---~~~L~~mS~~Tv~~~~~y~~sv~~~-----------cdsvD~sik~~y~liakceELn~~M~ 126 (149)
T PF10157_consen 61 AQAIAESVDSLLRSL---RSSLHSMSAITVEHMETYKDSVDKL-----------CDSVDASIKSMYTLIAKCEELNESMK 126 (149)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666665543 2356777777766777777775555 12367777777778888888887777
Q ss_pred hhhhhHH
Q 015248 120 KVSQGHL 126 (410)
Q Consensus 120 ~lr~~~~ 126 (410)
.+..-..
T Consensus 127 ~v~~La~ 133 (149)
T PF10157_consen 127 PVYKLAQ 133 (149)
T ss_pred HHHHHHH
Confidence 6654433
No 11
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=57.46 E-value=1.2e+02 Score=28.09 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhhcCC
Q 015248 292 VLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATG 335 (410)
Q Consensus 292 veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~~~~ 335 (410)
-+++..++..|+..++.++.++.++=+.|..+|..|-..+....
T Consensus 24 hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~ 67 (188)
T PF10018_consen 24 HQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQAD 67 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667778888888899999999999999999999999884433
No 12
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=53.57 E-value=67 Score=28.71 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHH-HHHHHhhcc--chHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 015248 238 ALQANVNAEVRNILSSGRATVLNELEAVDGSVKK-LYEVIQNEV--DTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVD 314 (410)
Q Consensus 238 ~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~-L~~~i~~~~--~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd 314 (410)
-+|+||++|+.+-. -.|...++.++.. +... +... .......+...|+.|+.+++... .++.+....
T Consensus 35 ~iq~Rva~eL~~L~-------~~~~~~~~~~l~~~~~~e-d~~~~~~~lSs~~v~~~i~~L~~kLe~~~-kl~~~~~~~- 104 (142)
T PF07956_consen 35 HIQERVAEELKRLE-------EEELKKFEEALEKSLLSE-DEKDQDPGLSSKSVNEEIEKLREKLEERK-KLRELKEEK- 104 (142)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhccc-ccccccccccHHHHHHHHHHHHHHHHHHH-HHHhccccc-
Confidence 45999999887532 1344444444322 1110 0000 00112234455555555555442 222222222
Q ss_pred HHHHHHHHhHHHHHhhhhcCCCC
Q 015248 315 GFFKIVLSGRDALLCNLRATGTA 337 (410)
Q Consensus 315 ~lFr~LI~~R~~LL~~l~~~~~~ 337 (410)
-+..+-.+|..|...|+..+..
T Consensus 105 -~~~~v~~aR~~vv~CL~~N~~r 126 (142)
T PF07956_consen 105 -NSEEVEKARSAVVRCLRENDGR 126 (142)
T ss_pred -cchhhHHHHHHHHHHHHHCCCC
Confidence 2445688899999999876654
No 13
>PRK04654 sec-independent translocase; Provisional
Probab=45.70 E-value=48 Score=31.69 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhcCCcc
Q 015248 204 VFVCSIFAAAFSGSAK 219 (410)
Q Consensus 204 v~V~~vLlaals~~~~ 219 (410)
++|..+++..+-||.+
T Consensus 9 LLlI~VVALlV~GPer 24 (214)
T PRK04654 9 LTLIAVVALVVLGPER 24 (214)
T ss_pred HHHHHHHHHHhcCchH
Confidence 4455555555568765
No 14
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=43.61 E-value=1.1e+02 Score=33.53 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHH-----HHHHHhHHHHHhhhhc
Q 015248 262 LEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFF-----KIVLSGRDALLCNLRA 333 (410)
Q Consensus 262 le~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lF-----r~LI~~R~~LL~~l~~ 333 (410)
|..+..|+.++...+ ..+.+++...+..|.+..++....|+++=..+|.+- +|||.||.+-||.+-.
T Consensus 268 ~~t~~~Al~KiQ~VV-----N~q~~aL~~L~~qL~nnF~AISssI~dIy~RLd~leAdaQVDRLItGRL~aLnafVt 339 (610)
T PF01601_consen 268 FTTTASALNKIQDVV-----NQQGQALNQLTSQLSNNFGAISSSIQDIYNRLDQLEADAQVDRLITGRLAALNAFVT 339 (610)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHH
Confidence 455555555554432 335567888888999999999999988888887774 7899999999998743
No 15
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=43.51 E-value=5.3e+02 Score=29.08 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHhhcCCCCCchhhhhHHHH
Q 015248 61 LSWMRLAMESLCET---HNVIKDLITELELPVSDWDEKWIDVY 100 (410)
Q Consensus 61 lswl~~al~~L~~~---h~~v~~Li~~l~lp~~~~~~kwVdey 100 (410)
+.|+.++-+.|..+ -++|+..|.. -...|+.|
T Consensus 42 ~~Wi~k~k~~l~~L~~~l~~ID~ai~~--------~l~lIe~~ 76 (683)
T PF08580_consen 42 LDWIQKAKDVLYGLREGLEEIDSAISR--------FLDLIEVY 76 (683)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH--------HHHHHHhh
Confidence 68998876555555 4555556633 34556666
No 16
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.76 E-value=92 Score=25.82 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 015248 285 EELLQKSVLDLGKRADNLSQGLDHLTKAVDGFF 317 (410)
Q Consensus 285 ~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lF 317 (410)
.+++...+.+++..+..++.-++.++.+++.+.
T Consensus 69 ~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 69 AEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777777776653
No 17
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=41.94 E-value=58 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHH
Q 015248 289 QKSVLDLGKRADNLSQGLDHLTKAV 313 (410)
Q Consensus 289 ~~~veeL~~~le~Le~gle~Le~~V 313 (410)
...++.|.++++.+...|+.||.++
T Consensus 22 ~~~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 22 TSALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456666667777777777777654
No 18
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=39.40 E-value=82 Score=23.63 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHH
Q 015248 288 LQKSVLDLGKRADNLSQGLDHLTK 311 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~ 311 (410)
+-.+++++.++++.||..|.+|-.
T Consensus 26 I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 26 ILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444556665555555555555443
No 19
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=39.31 E-value=1.1e+02 Score=32.49 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=46.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHH
Q 015248 257 TVLNELEAVDGSVKKLYEVIQNEVDTV-EEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIV 320 (410)
Q Consensus 257 ~~l~Ele~Vdaav~~L~~~i~~~~~~e-~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~L 320 (410)
-++++|.+|+-.-++|.+....-.+-- -...+.+.++++...-+.|+..|+-||.+++.+-..+
T Consensus 400 ~AI~~fR~Vk~~qRkl~e~~nsl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l 464 (489)
T KOG3684|consen 400 QAIHQFRSVKWEQRKLSEQANSLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTASL 464 (489)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999998888887633211100 1335778899999999999999999999998876544
No 20
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=38.52 E-value=1e+02 Score=24.67 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=22.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 015248 280 VDTVEEELLQKSVLDLGKRADNLSQGLDHLTK 311 (410)
Q Consensus 280 ~~~e~~e~v~~~veeL~~~le~Le~gle~Le~ 311 (410)
+..|+-+..+..+...+.++++|+..|..||+
T Consensus 47 VtREEFd~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 47 VTREEFDAQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556566677777777777777777777765
No 21
>PLN02320 seryl-tRNA synthetase
Probab=38.34 E-value=98 Score=33.44 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhchHHHHHHHhHHHHHHHH
Q 015248 293 LDLGKRADNLSQGLDHLTKAVDGFFKIVLS 322 (410)
Q Consensus 293 eeL~~~le~Le~gle~Le~~Vd~lFr~LI~ 322 (410)
++++.....|.+.|..+|+++..+-..+..
T Consensus 133 ~~l~~~~k~lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 133 QALVEEGKNLKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555444443
No 22
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=37.32 E-value=8.3e+02 Score=29.59 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=31.6
Q ss_pred HHhHhhHHHHHHHhhhhhHHHHHHHHhhccCCCchhHHHHHhhhHHHHHhhhccCccchHHHHHHHHH
Q 015248 107 LLDICIAFSSVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNL 174 (410)
Q Consensus 107 LLDvCna~~d~L~~lr~~~~~Lq~al~~l~~~~~~~~~Ra~~~L~~~~~~~~s~n~~i~k~~~~Lk~~ 174 (410)
+.+-=+.++.+|....+.+..+|.|++--+ ....-+...|...++.+.+..+...++..+|..+
T Consensus 1561 v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~----~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL 1624 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVAQGEAQDAIQGAD----RDIRLAQQLLAKVQEETAAAEKLATSATQQLGEL 1624 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446666677777777777777776332 2233344444444444433222333344444433
No 23
>PF15546 DUF4653: Domain of unknown function (DUF4653)
Probab=35.81 E-value=87 Score=29.74 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhhcCCCC
Q 015248 294 DLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTA 337 (410)
Q Consensus 294 eL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~~~~~~ 337 (410)
.|-+++..|...+-+=...+-+-|+.|+..|++|+..+.++...
T Consensus 190 ALl~Wir~LQ~~~~dQQ~RLQeSFDtILdnRKELiRclqq~~~p 233 (239)
T PF15546_consen 190 ALLRWIRGLQHQLVDQQNRLQESFDTILDNRKELIRCLQQRAAP 233 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcccCC
Confidence 35567777777778888888889999999999999999775443
No 24
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=35.51 E-value=2.5e+02 Score=24.69 Aligned_cols=61 Identities=13% Similarity=0.238 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHH
Q 015248 260 NELEAVDGSVKKLYEVIQNEVD--TVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIV 320 (410)
Q Consensus 260 ~Ele~Vdaav~~L~~~i~~~~~--~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~L 320 (410)
+.|++|-.++..-+.++..-++ +.+.++..+..+.++..+.++...++.+...++.+++.+
T Consensus 50 kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 50 KQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4556655555554444322110 112333444555555555555556666666666555544
No 25
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=35.33 E-value=2.1e+02 Score=22.98 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHH
Q 015248 291 SVLDLGKRADNLSQGLDHLTKAVDGFFKI 319 (410)
Q Consensus 291 ~veeL~~~le~Le~gle~Le~~Vd~lFr~ 319 (410)
.|.++.++++++...++.|+.+|+..-+.
T Consensus 36 ~v~~l~~klDa~~~~l~~l~~~V~~I~~i 64 (75)
T PF05531_consen 36 DVTELNKKLDAQSAQLTTLNTKVNEIQDI 64 (75)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888888888888888877766443
No 26
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.08 E-value=1.9e+02 Score=27.50 Aligned_cols=57 Identities=14% Similarity=0.262 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHhhccchHH--HHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHH
Q 015248 263 EAVDGSVKKLYEVIQNEVDTVE--EELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKI 319 (410)
Q Consensus 263 e~Vdaav~~L~~~i~~~~~~e~--~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~ 319 (410)
++.+.+++.+...+.-..++-+ =+.+...-+......+.+...|+.+|...+.+|++
T Consensus 42 eQF~sALe~f~sl~~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~E 100 (201)
T PF11172_consen 42 EQFKSALEQFKSLVNFDGGDLEDKYNALNDEYESSEDAAEEVSDRIDAVEDVADALFDE 100 (201)
T ss_pred HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777776654322222 23566777888888888899999999999999975
No 27
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=34.77 E-value=39 Score=20.97 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=12.1
Q ss_pred HHHhhchHHHHHHHhHHHH
Q 015248 300 DNLSQGLDHLTKAVDGFFK 318 (410)
Q Consensus 300 e~Le~gle~Le~~Vd~lFr 318 (410)
+.+...|.+||.+++.+++
T Consensus 4 ~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 4 NRLRNRISDLERQLSECRR 22 (23)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445556777777777654
No 28
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=34.09 E-value=3.9e+02 Score=29.52 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 015248 258 VLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAV 313 (410)
Q Consensus 258 ~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~V 313 (410)
..++++.++..+..+...+.....+++...+.+..+++++.++.++.-++.+..++
T Consensus 396 ~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~ 451 (650)
T TIGR03185 396 LLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQL 451 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666554432223333333333333333333333333333333
No 29
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.47 E-value=2e+02 Score=26.75 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhhcCCCCCC
Q 015248 285 EELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPD 339 (410)
Q Consensus 285 ~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~~~~~~~~ 339 (410)
++.-+..++||+..++.|+.-|+++.+.++++-..+-+-|..+-.+--..++.++
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~~~~q~~p~~~~ 155 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPESELKPIRQAPPNPGP 155 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccCCCCCCc
Confidence 4445678899999999999999999999998886666555554444333333333
No 30
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.26 E-value=3.4e+02 Score=23.87 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 015248 259 LNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVD 314 (410)
Q Consensus 259 l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd 314 (410)
..-++.||.-+++.....+. + .++..+++..++.++..++.+..-+..||..++
T Consensus 67 sqRId~vd~klDe~~ei~~~-i-~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQ-I-KDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHH-H-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666555555433221 1 122233444444444444444444444444443
No 31
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.73 E-value=3.7e+02 Score=25.84 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 015248 258 VLNELEAVDGSVKKLYEV 275 (410)
Q Consensus 258 ~l~Ele~Vdaav~~L~~~ 275 (410)
...|++.+...++.|...
T Consensus 54 L~~e~~~l~~e~e~L~~~ 71 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVY 71 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666666544
No 32
>PRK00708 sec-independent translocase; Provisional
Probab=32.59 E-value=1.4e+02 Score=28.59 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHhcCCcc
Q 015248 203 TVFVCSIFAAAFSGSAK 219 (410)
Q Consensus 203 Tv~V~~vLlaals~~~~ 219 (410)
=++|..+++..|-||.+
T Consensus 8 ELlvI~vVaLvV~GPkr 24 (209)
T PRK00708 8 ELLVIAIVLIVVVGPKD 24 (209)
T ss_pred HHHHHHHHHHhhcCchH
Confidence 34555555556668765
No 33
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.38 E-value=3.3e+02 Score=25.31 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 015248 261 ELEAVDGSVKKLYEVI 276 (410)
Q Consensus 261 Ele~Vdaav~~L~~~i 276 (410)
|++.++..+..|...+
T Consensus 77 ~~~~~~~~i~~l~~~i 92 (188)
T PF03962_consen 77 EIEELEKKIEELEEKI 92 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 34
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.25 E-value=1.4e+02 Score=31.41 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 015248 288 LQKSVLDLGKRADNLSQGLDHLTKAVDG 315 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd~ 315 (410)
+.+.+.++++.+..++.-++.++++++.
T Consensus 71 l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 71 LIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544444444443
No 35
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=32.24 E-value=2.5e+02 Score=29.94 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.8
Q ss_pred HHHhhchHHHHHHHhHHHHHHHHhHHH
Q 015248 300 DNLSQGLDHLTKAVDGFFKIVLSGRDA 326 (410)
Q Consensus 300 e~Le~gle~Le~~Vd~lFr~LI~~R~~ 326 (410)
.++.+-+|++.+|+++.|...++.|+.
T Consensus 442 qe~~q~lddlDkqI~qaYvKr~r~~kk 468 (516)
T KOG4191|consen 442 QEFQQVLDDLDKQIEQAYVKRNRSRKK 468 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777899999999999999999983
No 36
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=32.07 E-value=3.4e+02 Score=23.53 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHh
Q 015248 287 LLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLC 329 (410)
Q Consensus 287 ~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~ 329 (410)
.+...++.++..++.|..+++.|..+|-+=|..+-+....|=+
T Consensus 69 ~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~r 111 (132)
T PF10392_consen 69 ELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLER 111 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455788888888888888899999998888888777666543
No 37
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=31.38 E-value=1.7e+02 Score=22.10 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHH
Q 015248 260 NELEAVDGSVKKLYE 274 (410)
Q Consensus 260 ~Ele~Vdaav~~L~~ 274 (410)
+|+.+++..+..++.
T Consensus 7 n~~~~~~~~i~tvk~ 21 (55)
T PF05377_consen 7 NELPRIESSINTVKK 21 (55)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555544444443
No 38
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=31.37 E-value=3e+02 Score=25.59 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHhh----------ccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHH
Q 015248 259 LNELEAVDGSVKKLYEVIQN----------EVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIV 320 (410)
Q Consensus 259 l~Ele~Vdaav~~L~~~i~~----------~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~L 320 (410)
+.||+..+..++.++..+.+ .+-..-.++-+.-|+.|+.-=++++.-+++||-|+++--..|
T Consensus 104 ~~Elq~mr~~ln~FR~qm~dlE~~l~~QQalvy~hMSeeER~EaeQLQsLR~avRqElqELE~QL~DRl~~l 175 (179)
T PF14723_consen 104 VQELQQMRRSLNSFREQMMDLELHLMRQQALVYRHMSEEEREEAEQLQSLRSAVRQELQELEFQLEDRLLQL 175 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555432 000000122355578888888888999999999988765544
No 39
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=31.17 E-value=3.2e+02 Score=26.80 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=58.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhhcC
Q 015248 255 RATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRAT 334 (410)
Q Consensus 255 ~~~~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~~~ 334 (410)
+...++++..+...+..+...+..+.. -..+.+.+.- .....++...||....+..+|=+.+=+.|.+.=.- .-
T Consensus 20 g~~f~~~i~si~~n~s~~e~~i~qi~~-~h~d~L~Ev~---e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~--~i 93 (280)
T COG5074 20 GVTFMNKILSINKNLSVYEKEINQIDN-LHKDLLTEVF---EEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERD--GI 93 (280)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc--cc
Confidence 355667777777777666554332210 0111111111 12233446666777777777766665555443211 01
Q ss_pred CCCCCcccCCCcchhHHhhhhHHHhhhhhc
Q 015248 335 GTAPDILVGRNAEPVRRKLISQELAQTWRY 364 (410)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (410)
+.....+|..|+++..+++|-.|.--+-+|
T Consensus 94 hl~~k~aQae~~r~Kf~~~I~~yr~i~~~y 123 (280)
T COG5074 94 HLANKQAQAENVRQKFLKLIQDYRIIDSNY 123 (280)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123457888899999999999998766555
No 40
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=30.43 E-value=2.6e+02 Score=23.45 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 015248 288 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 331 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l 331 (410)
..+.+.+|.++.+.++..|+.++++.+.+-..+...+..|=..+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777777777777777777777777777766666554443
No 41
>PLN02372 violaxanthin de-epoxidase
Probab=29.41 E-value=2.8e+02 Score=29.28 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=28.9
Q ss_pred HHhhchHHHHHHHhHHHHHHHHhHHHHHhhhhc
Q 015248 301 NLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRA 333 (410)
Q Consensus 301 ~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~~ 333 (410)
.|++|+..|+.....+.+.+-+--+.+|+-+..
T Consensus 407 ~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~ 439 (455)
T PLN02372 407 ALEEGLKELEQDEENFLKELSKEEKELLEKLKM 439 (455)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 499999999999999999999999999887643
No 42
>PLN02678 seryl-tRNA synthetase
Probab=29.26 E-value=1.7e+02 Score=31.12 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 015248 286 ELLQKSVLDLGKRADNLSQGLDHLTKAVD 314 (410)
Q Consensus 286 e~v~~~veeL~~~le~Le~gle~Le~~Vd 314 (410)
+++.+.+.+|+..+..|+.-++.++.+++
T Consensus 74 ~~l~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 74 TELIAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666555555555555554
No 43
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.86 E-value=2.3e+02 Score=32.95 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHH
Q 015248 286 ELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDA 326 (410)
Q Consensus 286 e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~ 326 (410)
+.+.+.=-+|..++..|++.|.+||+ ++++-..++..-..
T Consensus 451 ~qLtdknlnlEekVklLeetv~dlEa-lee~~EQL~Esn~e 490 (1243)
T KOG0971|consen 451 EQLTDKNLNLEEKVKLLEETVGDLEA-LEEMNEQLQESNRE 490 (1243)
T ss_pred HHHHhhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 33444445667777777777777764 56666666655433
No 44
>PRK11637 AmiB activator; Provisional
Probab=28.66 E-value=6.1e+02 Score=26.40 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHH
Q 015248 260 NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLS 322 (410)
Q Consensus 260 ~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~ 322 (410)
.+++.++..+..+...|... ..+...+...++.++..++.++.-|+...+.+....+.+=+
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~--~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRET--QNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333221 12233445556666666666666666655555555554444
No 45
>PRK09343 prefoldin subunit beta; Provisional
Probab=28.51 E-value=2.1e+02 Score=24.60 Aligned_cols=47 Identities=15% Similarity=0.006 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhhcC
Q 015248 288 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRAT 334 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~~~ 334 (410)
..+...++.++++.++..|+.++++.+.+=..+...+..|-..+..+
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~ 115 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44667888888888889999999999998888888888887777553
No 46
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=28.41 E-value=1.8e+02 Score=27.15 Aligned_cols=67 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHhhccchHHHH-------HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHH
Q 015248 254 GRATVLNELEAVDGSVKKLYEVIQNEVDTVEEE-------LLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIV 320 (410)
Q Consensus 254 g~~~~l~Ele~Vdaav~~L~~~i~~~~~~e~~e-------~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~L 320 (410)
+..+...||-+.-..+-.++-..+...++..+. .-+..|.++.+.+=.+|..||.+|++.++.|+.+
T Consensus 29 ~q~m~TEEFSa~IG~vLd~yL~yQKafnE~MekYLe~lNlPSr~DiarvA~lvinlE~kvD~lee~fdd~~d~l 102 (189)
T TIGR02132 29 GDNIKREEFSALMGNVLDLNLFYQKALNDTTGNYLEQVNVPTKEDIANVASLVINLEEKVDLIEEFFDDKFDEL 102 (189)
T ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 47
>PHA01750 hypothetical protein
Probab=28.35 E-value=2.1e+02 Score=22.44 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 015248 288 LQKSVLDLGKRAD 300 (410)
Q Consensus 288 v~~~veeL~~~le 300 (410)
+.+.|+|++++++
T Consensus 61 l~~qv~eik~k~d 73 (75)
T PHA01750 61 LSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHhhc
Confidence 4455555555553
No 48
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=28.10 E-value=2.6e+02 Score=22.86 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHh
Q 015248 288 LQKSVLDLGKRADNLSQGLDHLTKAVD 314 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd 314 (410)
+...-.+|+..++.++.-|++|++-|.
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666665554
No 49
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=26.52 E-value=2.4e+02 Score=21.26 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhchHHHHHHH
Q 015248 292 VLDLGKRADNLSQGLDHLTKAV 313 (410)
Q Consensus 292 veeL~~~le~Le~gle~Le~~V 313 (410)
+..+++..+.+.+.+|.+++-|
T Consensus 16 i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444
No 50
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=26.29 E-value=3.6e+02 Score=22.03 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhhc
Q 015248 288 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRA 333 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~~ 333 (410)
+...++.|-.+++.||+.-|.|..++..|-..=..+|..+=.-..+
T Consensus 31 ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~~ 76 (83)
T PF03670_consen 31 INSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLSK 76 (83)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344666777777778888888888888877777777776554443
No 51
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.25 E-value=4.4e+02 Score=25.71 Aligned_cols=23 Identities=17% Similarity=-0.031 Sum_probs=10.9
Q ss_pred HHHHHhHHHHHHHHhHHHHHhhh
Q 015248 309 LTKAVDGFFKIVLSGRDALLCNL 331 (410)
Q Consensus 309 Le~~Vd~lFr~LI~~R~~LL~~l 331 (410)
|...++-.=+++..-+..|.+..
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~ 116 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELM 116 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555443
No 52
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=26.01 E-value=54 Score=22.54 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhchHHHHH
Q 015248 290 KSVLDLGKRADNLSQGLDHLTK 311 (410)
Q Consensus 290 ~~veeL~~~le~Le~gle~Le~ 311 (410)
.+++||-+.-+.|+..||++|+
T Consensus 14 ~AvqeLck~t~~Le~rI~ele~ 35 (36)
T PF13887_consen 14 GAVQELCKLTDNLETRIDELER 35 (36)
T ss_pred HHHHHHHHHhccHHHHHHHHhh
Confidence 4577888888888888887764
No 53
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=25.90 E-value=2.7e+02 Score=25.37 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhh
Q 015248 286 ELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLR 332 (410)
Q Consensus 286 e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~ 332 (410)
+..++.++.++..++.|+..+.+|...++.+.+.+.--|...+..++
T Consensus 68 ~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~ 114 (157)
T COG3352 68 EGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESR 114 (157)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHH
Confidence 34678899999999999999999999999999999888877776653
No 54
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=25.59 E-value=4.7e+02 Score=28.88 Aligned_cols=72 Identities=19% Similarity=0.185 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHH--HHHHHhHHHHHhhhhcC
Q 015248 257 TVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFF--KIVLSGRDALLCNLRAT 334 (410)
Q Consensus 257 ~~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lF--r~LI~~R~~LL~~l~~~ 334 (410)
..++||..|...++.+...++. +...-+++++.+..-...-.++-.+++.+. +..++.|..+|+.+...
T Consensus 35 ~~L~~f~~v~~~l~~~~~~v~~---------l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~ 105 (618)
T PF06419_consen 35 EFLKEFSPVNRQLKRLQSDVDK---------LNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLER 105 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999988888877665432 444555555565555666666666666663 45678888888877664
Q ss_pred CCC
Q 015248 335 GTA 337 (410)
Q Consensus 335 ~~~ 337 (410)
=+-
T Consensus 106 f~L 108 (618)
T PF06419_consen 106 FTL 108 (618)
T ss_pred CCC
Confidence 333
No 55
>PF02252 PA28_beta: Proteasome activator pa28 beta subunit; InterPro: IPR003186 PA28 activator complex (also known as 11S regulator of 20S proteasome) is a ring shaped hexameric structure of alternating alpha (PA28alpha) and beta (PA28beta) subunits. The catalytic properties of PA28alpha and PA28beta-activated proteosome are similar [, ]. This entry represents the beta subunit. The activator complex binds to the 20S proteasome and stimulates peptidase activity in and ATP-independent manner.; GO: 0008537 proteasome activator complex; PDB: 1AVO_N.
Probab=25.58 E-value=5e+02 Score=23.39 Aligned_cols=86 Identities=14% Similarity=0.228 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH-HHHHHHHHHhhchHHHHHHH
Q 015248 235 AFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVL-DLGKRADNLSQGLDHLTKAV 313 (410)
Q Consensus 235 sl~~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~ve-eL~~~le~Le~gle~Le~~V 313 (410)
.+..|.+.+..|+.. ++..+..|...+.-+.+.|++|-+ +..+|| ++-..+.+.+...+.+-.++
T Consensus 10 ~I~~l~~~vk~ei~~--------l~e~~~~vk~WI~l~IPkiEDGNN------FGV~VQeevl~~l~~v~~~a~~~~~~i 75 (150)
T PF02252_consen 10 KIVELLQKVKPEIRE--------LIEKCNTVKMWIQLLIPKIEDGNN------FGVSVQEEVLEELRAVESKAENFLDQI 75 (150)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHT-----SS--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCcccccCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777663 566678888888888888776522 233332 33333333333334433333
Q ss_pred hHHHHHHHHhHHHHHhhhhcCCCCC
Q 015248 314 DGFFKIVLSGRDALLCNLRATGTAP 338 (410)
Q Consensus 314 d~lFr~LI~~R~~LL~~l~~~~~~~ 338 (410)
...| .+|..+...+...|+..
T Consensus 76 ~~Y~----~~Ra~~v~k~~K~p~v~ 96 (150)
T PF02252_consen 76 SKYF----SARAKAVSKAAKYPHVE 96 (150)
T ss_dssp HHHH----HHHHHHHHHHHH-TTBT
T ss_pred HHHH----HHHHHHHHHHHhCCCHH
Confidence 3333 57888899888888874
No 56
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=25.33 E-value=2.4e+02 Score=29.62 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 015248 286 ELLQKSVLDLGKRADNLSQGLDHLTKAVDGF 316 (410)
Q Consensus 286 e~v~~~veeL~~~le~Le~gle~Le~~Vd~l 316 (410)
+++++.+.+++..+..|+..++.++++++..
T Consensus 72 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 72 EEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666655555555555555443
No 57
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.32 E-value=4.5e+02 Score=25.24 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=6.3
Q ss_pred HHhhhhHHHhhhhhc
Q 015248 350 RRKLISQELAQTWRY 364 (410)
Q Consensus 350 ~~~~~~~~~~~~~~~ 364 (410)
.+.+++.||.-.+.|
T Consensus 207 lv~lls~yL~v~Lpy 221 (302)
T PF10186_consen 207 LVSLLSRYLGVPLPY 221 (302)
T ss_pred HHHHHHHHhCCCCCC
Confidence 334444444444433
No 58
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.74 E-value=6.4e+02 Score=24.60 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=9.0
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 015248 257 TVLNELEAVDGSVKKLYE 274 (410)
Q Consensus 257 ~~l~Ele~Vdaav~~L~~ 274 (410)
...+|++.....+..+..
T Consensus 86 ~~~~e~~aL~~E~~~ak~ 103 (239)
T COG1579 86 KDERELRALNIEIQIAKE 103 (239)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 344555555555444443
No 59
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=24.28 E-value=5e+02 Score=26.05 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHH-HHhHH
Q 015248 288 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIV-LSGRD 325 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~L-I~~R~ 325 (410)
.+.-|+.|+..+|.++..|-+=.+++-..|-+| |++|+
T Consensus 122 ARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~K 160 (305)
T PF15290_consen 122 ARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKK 160 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhH
Confidence 445688888999999999999999999999777 55554
No 60
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=24.22 E-value=1.6e+02 Score=22.06 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 015248 288 LQKSVLDLGKRADNLSQGLDHLTKAVDGFF 317 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd~lF 317 (410)
+..--+++-.+++.+...||+||+.+.++-
T Consensus 19 Fq~mS~~I~~riDeM~~RIDdLE~si~dl~ 48 (54)
T PF06825_consen 19 FQTMSDQILGRIDEMSSRIDDLEKSIADLM 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHH----
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444567788888888888888888887763
No 61
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=24.04 E-value=1.8e+02 Score=31.80 Aligned_cols=40 Identities=20% Similarity=0.319 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHH
Q 015248 288 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDAL 327 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~L 327 (410)
..+...++..-+++++++|..|+++++.+...++++|.+|
T Consensus 426 ~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~l 465 (561)
T PF00429_consen 426 YRQLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRAL 465 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 4455566777777788999999999999999999999875
No 62
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.83 E-value=3e+02 Score=24.02 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhhc
Q 015248 289 QKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRA 333 (410)
Q Consensus 289 ~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~~ 333 (410)
.+.+++|..+.|.|+..|+.|+++-+.+=.++=+-+..|-+.+..
T Consensus 69 ~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 69 EEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466888888888888888888888888888877777777776643
No 63
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.43 E-value=3.7e+02 Score=24.62 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHH
Q 015248 288 LQKSVLDLGKRADNLSQGLDHLTKAVDGFF 317 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd~lF 317 (410)
..+.++++++.+++-+..++.|-+|.+++-
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666677766666653
No 64
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.86 E-value=1e+03 Score=26.16 Aligned_cols=30 Identities=7% Similarity=0.200 Sum_probs=20.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHhhcCCCCC
Q 015248 61 LSWMRLAMESL----CETHNVIKDLITELELPVS 90 (410)
Q Consensus 61 lswl~~al~~L----~~~h~~v~~Li~~l~lp~~ 90 (410)
+.||-..|+-- .....+|..++.++++|..
T Consensus 109 FkfLY~~Ldp~y~f~~r~EeEV~~ilK~L~YPf~ 142 (581)
T KOG0995|consen 109 FKFLYGFLDPDYEFPERIEEEVVQILKNLKYPFL 142 (581)
T ss_pred HHHHHhccCCCcccchhHHHHHHHHHHhCCCCcc
Confidence 56666665543 3457788888888898854
No 65
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.62 E-value=2.2e+02 Score=25.60 Aligned_cols=21 Identities=19% Similarity=0.366 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhhchHHHHHH
Q 015248 292 VLDLGKRADNLSQGLDHLTKA 312 (410)
Q Consensus 292 veeL~~~le~Le~gle~Le~~ 312 (410)
.+.++..+..|...++.++.+
T Consensus 110 ~~~l~~~l~~l~~~~~~l~~~ 130 (145)
T COG1730 110 IEKLQQALAELAQRIEQLEQE 130 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334333333333
No 66
>PRK02119 hypothetical protein; Provisional
Probab=22.46 E-value=3.9e+02 Score=21.02 Aligned_cols=32 Identities=6% Similarity=-0.016 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHHHHH
Q 015248 291 SVLDLGKRADNLSQGLDHLTKAVDGFFKIVLS 322 (410)
Q Consensus 291 ~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~ 322 (410)
.|++|-..+-.-..-|+.|.+++..+.+++-.
T Consensus 24 tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 24 LLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555555556666666666665533
No 67
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.57 E-value=2.3e+02 Score=25.56 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 015248 260 NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTK 311 (410)
Q Consensus 260 ~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~ 311 (410)
.|+..+...+..|...+..-...--.+++...+.+++..++.++..|+.|..
T Consensus 86 ~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 86 EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555444332100001123455566666666666655555543
No 68
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=21.49 E-value=5.7e+02 Score=22.56 Aligned_cols=73 Identities=18% Similarity=0.362 Sum_probs=37.9
Q ss_pred HHHHHHHHH---HHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHhhc-------cc--------hHHHHHHHHHHHHHH
Q 015248 235 AFSALQANV---NAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQNE-------VD--------TVEEELLQKSVLDLG 296 (410)
Q Consensus 235 sl~~Lq~rV---~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i~~~-------~~--------~e~~e~v~~~veeL~ 296 (410)
-|+++..|+ ..|++. .-+++++++.|...+.-. +.. ++ +.-.+.+.+.-+.+.
T Consensus 24 ~Fsrl~~R~~~lk~dik~--------~k~~~enledA~~EieL~-Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~ 94 (131)
T KOG1760|consen 24 EFSRLNSRKDDLKADIKE--------AKTEIENLEDASNEIELL-DEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLE 94 (131)
T ss_pred HHHHHHhhHHHHHHHHHH--------HHHHHHHHHHHHhhHhhc-CccccccceehhhhheeccHHHHHHHHHHHHHHHH
Confidence 566776664 345543 236777777776665432 211 00 111233444555555
Q ss_pred HHHHHHhhchHHHHHHHhHH
Q 015248 297 KRADNLSQGLDHLTKAVDGF 316 (410)
Q Consensus 297 ~~le~Le~gle~Le~~Vd~l 316 (410)
+.++.|+...+.++..++.+
T Consensus 95 k~i~~les~~e~I~~~m~~L 114 (131)
T KOG1760|consen 95 KEIEELESELESISARMDEL 114 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655555554
No 69
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=21.46 E-value=1.2e+03 Score=26.38 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=22.6
Q ss_pred hcCCCceeecccccccCCCcceehhhhhhh
Q 015248 363 RYYPPCFISKSWITNLSPACYGVHCVNLLG 392 (410)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (410)
=+-|-|. ..|..-+=+-||-|-|-|-.-
T Consensus 644 LkCs~Cn--~R~Kd~vI~kC~H~FC~~Cvq 671 (698)
T KOG0978|consen 644 LKCSVCN--TRWKDAVITKCGHVFCEECVQ 671 (698)
T ss_pred eeCCCcc--CchhhHHHHhcchHHHHHHHH
Confidence 3556777 889999999999999887553
No 70
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=20.69 E-value=3.4e+02 Score=21.78 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHH---HhhchHHHHHHHhHHHH
Q 015248 288 LQKSVLDLGKRADN---LSQGLDHLTKAVDGFFK 318 (410)
Q Consensus 288 v~~~veeL~~~le~---Le~gle~Le~~Vd~lFr 318 (410)
++..|+.++..+.. |...+|.+..+++.+-.
T Consensus 23 Lq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~ 56 (75)
T PF05531_consen 23 LQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNT 56 (75)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333 55556666666666544
No 71
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=20.37 E-value=1.2e+03 Score=26.90 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhhcCCCCCCcccCCCcchhHHhhhhHHHhhhhhcC
Q 015248 287 LLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAEPVRRKLISQELAQTWRYY 365 (410)
Q Consensus 287 ~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (410)
+.+++...-+.-+.+++..-|.+..++++.-+.|...|-+|++.+.++...- +--.-++.+--+++++...+++.
T Consensus 143 ~eR~~L~~e~~~in~~~~~~e~ls~~~~~~ld~I~~~RReLf~~~l~~~~~i----s~~l~~~q~~~~~d~l~~~~~~~ 217 (835)
T COG3264 143 QERDALQAEKAYINALEGQAEQLTAEVRDILDQILDTRRELLNSLLSQREAI----SLQLNQQQLSAASDELRSLLHQQ 217 (835)
T ss_pred HHHHHHhhhHHHHHHHhcchhhhCHHHHHHHHHHHHHHHHHHHHHHhhcccc----CHhhhHHHHHHHHHHHHHHHHHh
Confidence 3455666667777777877788899999999999999999999998877221 11222445555666666655543
No 72
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.18 E-value=4.8e+02 Score=27.28 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=19.1
Q ss_pred HHHHHHHHH--HhhchHHHHHHHhHHHHHHHHhHHHH
Q 015248 293 LDLGKRADN--LSQGLDHLTKAVDGFFKIVLSGRDAL 327 (410)
Q Consensus 293 eeL~~~le~--Le~gle~Le~~Vd~lFr~LI~~R~~L 327 (410)
.+|+++|+- +...++.|--.++++...+..+-..+
T Consensus 233 n~lekrceiyp~d~~merlp~h~e~l~se~a~~arlf 269 (637)
T KOG4421|consen 233 NELEKRCEIYPLDKEMERLPHHNEELESELADAARLF 269 (637)
T ss_pred HHHHHhhcccchhHHHhhcCcchHHHHHHHHHHHHHh
Confidence 555555543 44445555555666666666554433
No 73
>PF02725 Paramyxo_NS_C: Non-structural protein C; InterPro: IPR003875 This family consists of the polymerase accessory protein C from members of the paramyxoviridae.
Probab=20.06 E-value=1.1e+02 Score=28.17 Aligned_cols=26 Identities=31% Similarity=0.682 Sum_probs=22.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHh
Q 015248 58 ILNLSWMRLAMESLCETHNVIKDLIT 83 (410)
Q Consensus 58 ~lSlswl~~al~~L~~~h~~v~~Li~ 83 (410)
-++++|+.|++..+...++|...|-+
T Consensus 109 mLT~sWf~Qal~~i~~S~eE~~~L~~ 134 (165)
T PF02725_consen 109 MLTLSWFNQALMVICQSQEEKENLHT 134 (165)
T ss_pred cchHHHHHHHHHHHcccHHHHHHHHH
Confidence 47899999999999999998887753
No 74
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=20.03 E-value=3.6e+02 Score=19.66 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=10.9
Q ss_pred chHHHHHHHhHHHHHHHHhHHHH
Q 015248 305 GLDHLTKAVDGFFKIVLSGRDAL 327 (410)
Q Consensus 305 gle~Le~~Vd~lFr~LI~~R~~L 327 (410)
-||.|+..++..-..+-++...|
T Consensus 33 ~ld~i~~~vd~~~~~l~~~~~~l 55 (63)
T PF05739_consen 33 MLDRIEDNVDRANENLKKGNKKL 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444444444443
No 75
>PRK01919 tatB sec-independent translocase; Provisional
Probab=20.02 E-value=3.4e+02 Score=25.15 Aligned_cols=16 Identities=13% Similarity=0.275 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhcCCcc
Q 015248 204 VFVCSIFAAAFSGSAK 219 (410)
Q Consensus 204 v~V~~vLlaals~~~~ 219 (410)
++|..+++..+-||.+
T Consensus 9 lliI~VVALiV~GPek 24 (169)
T PRK01919 9 LALIGVVALVVIGPER 24 (169)
T ss_pred HHHHHHHHHheeCchH
Confidence 3444455555568765
Done!