BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015250
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VAR|A Chain A, Crystal Structure Of Dnpep, Znzn Form
pdb|3VAT|A Chain A, Crystal Structure Of Dnpep, Znmg Form
Length = 496
Score = 379 bits (974), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/410 (47%), Positives = 261/410 (63%), Gaps = 7/410 (1%)
Query: 2 SCLVAFAVGQKYSVGNGFHIIAAHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLWHTWF 61
S ++AFAVG +Y GNGF +I AHTD G+ V V+TYGGG+W TWF
Sbjct: 92 STIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVETYGGGIWSTWF 151
Query: 62 DRDLTVAGRVIVR-GSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPNLETQLIP 120
DRDLT+AGRVIV+ + G +LV V RP+LR+P LAIHL R VN++ F PN+E L+P
Sbjct: 152 DRDLTLAGRVIVKCPTSGRLEQRLVHVDRPILRIPHLAIHLQRNVNEN-FGPNMEMHLVP 210
Query: 121 LLAXXXXXXXXXXXXXX-XXXXXXXXHHPQLMQILSQELGCGTDDIASIELNICDTQPSC 179
+LA HH L +L LG +DI +EL + DTQP+
Sbjct: 211 ILATSIQEELEKGTPEPGPLNATDERHHSVLTSLLCAHLGLSPEDILEMELCLADTQPAV 270
Query: 180 LGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 239
LGGA EFIF+ RLDNL S +C L+ALIDSC +P++L+++ +RM+AL+DNEEVGS+S Q
Sbjct: 271 LGGAYEEFIFAPRLDNLHSCFCALQALIDSCSAPASLAADPHVRMIALYDNEEVGSESAQ 330
Query: 240 GAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRP 299
GA + +RRI S H T+FE I +S+++SADMAH VHPN+ +KHEE+HRP
Sbjct: 331 GAQSLLTELVLRRISASPQHL----TAFEEAIPKSYMISADMAHAVHPNYLDKHEENHRP 386
Query: 300 EMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGV 359
KG VIK N+ QRYA++ V+ L +E+A +P Q+ +VRND CG+TIGPILAS +
Sbjct: 387 LFHKGPVIKVNSKQRYASNAVSEALIREVASSVGVPLQDLMVRNDSPCGTTIGPILASRL 446
Query: 360 GIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKLIVD 409
G+R +D G QL+MHS+RE T + FK F+E F S+ + L+VD
Sbjct: 447 GLRVLDLGSPQLAMHSIRETACTTGVLQTITLFKGFFELFPSLSRSLLVD 496
>pdb|4DYO|A Chain A, Crystal Structure Of Human Aspartyl Aminopeptidase (Dnpep)
In Complex With Aspartic Acid Hydroxamate
Length = 485
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 195/407 (47%), Positives = 257/407 (63%), Gaps = 7/407 (1%)
Query: 2 SCLVAFAVGQKYSVGNGFHIIAAHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLWHTWF 61
S ++AFAVG +Y GNGF +I AHTD G+ V V+TYGGG+W TWF
Sbjct: 81 STIIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRRSRRSQVGFQQVGVETYGGGIWSTWF 140
Query: 62 DRDLTVAGRVIVR-GSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPNLETQLIP 120
DRDLT+AGRVIV+ + G +LV V+RP+LR+P LAIHL R +N++ F PN E L+P
Sbjct: 141 DRDLTLAGRVIVKCPTSGRLEQQLVHVERPILRIPHLAIHLQRNINEN-FGPNTEMHLVP 199
Query: 121 LLAXXXXXXXXXXXXXX-XXXXXXXXHHPQLMQILSQELGCGTDDIASIELNICDTQPSC 179
+LA HH LM +L LG DI +EL + DTQP+
Sbjct: 200 ILATAIQEELEKGTPEPGPLNAVDERHHSVLMSLLCAHLGLSPKDIVEMELCLADTQPAV 259
Query: 180 LGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQ 239
LGGA +EFIF+ RLDNL S +C L+ALIDSC P +L++E +RMV L+DNEEVGS+S Q
Sbjct: 260 LGGAYDEFIFAPRLDNLHSCFCALQALIDSCAGPGSLATEPHVRMVTLYDNEEVGSESAQ 319
Query: 240 GAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRP 299
GA + +RRI S H T+FE I +SF++SADMAH VHPN+ +KHEE+HRP
Sbjct: 320 GAQSLLTELVLRRISASCQHP----TAFEEAIPKSFMISADMAHAVHPNYLDKHEENHRP 375
Query: 300 EMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGV 359
KG VIK N+ QRYA++ V+ L +E+A +P Q+ +VRND CG+TIGPILAS +
Sbjct: 376 LFHKGPVIKVNSKQRYASNAVSEALIREVANKVKVPLQDLMVRNDTPCGTTIGPILASRL 435
Query: 360 GIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSIDKKL 406
G+R +D G QL+MHS+RE+ T + FK F+E F S+ + L
Sbjct: 436 GLRVLDLGSPQLAMHSIREMACTTGVLQTLTLFKGFFELFPSLAENL 482
>pdb|2IJZ|A Chain A, Crystal Structure Of Aminopeptidase
pdb|2IJZ|B Chain B, Crystal Structure Of Aminopeptidase
pdb|2IJZ|C Chain C, Crystal Structure Of Aminopeptidase
pdb|2IJZ|D Chain D, Crystal Structure Of Aminopeptidase
pdb|2IJZ|E Chain E, Crystal Structure Of Aminopeptidase
pdb|2IJZ|F Chain F, Crystal Structure Of Aminopeptidase
pdb|2IJZ|G Chain G, Crystal Structure Of Aminopeptidase
pdb|2IJZ|H Chain H, Crystal Structure Of Aminopeptidase
pdb|2IJZ|I Chain I, Crystal Structure Of Aminopeptidase
pdb|2IJZ|J Chain J, Crystal Structure Of Aminopeptidase
pdb|2IJZ|K Chain K, Crystal Structure Of Aminopeptidase
pdb|2IJZ|L Chain L, Crystal Structure Of Aminopeptidase
Length = 428
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/397 (38%), Positives = 223/397 (56%), Gaps = 30/397 (7%)
Query: 2 SCLVAFAVGQKYSVGNGFHIIAAHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLWHTWF 61
S L+A +G++ + +GF ++ AHTD G+L + V+ YGG L+ WF
Sbjct: 58 SSLIAIRLGRRSPLESGFRLVGAHTDSPCLRVKPNPEIARNGFLQLGVEVYGGALFAPWF 117
Query: 62 DRDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPNLETQLIPL 121
DRDL++AGRV R ++G +LV ++ + +P L IHL+R N +G+ N + +L P+
Sbjct: 118 DRDLSLAGRVTFR-ANGKLESRLVDFRKAIAVIPNLNIHLNRAAN-EGWPINAQNELPPI 175
Query: 122 LAXXXXXXXXXXXXXXXXXXXXXXHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLG 181
+A L + L +E G D + EL+ DTQ + +
Sbjct: 176 IAQLAPGEAADFRLL-------------LDEQLLREHGITADVVLDYELSFYDTQSAAVV 222
Query: 182 GANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGA 241
G N+EFI RLDNL S + GL AL+++ E+ I + D+EEVGS S+ GA
Sbjct: 223 GLNDEFIAGARLDNLLSCHAGLEALLNA------EGDENCILVCT--DHEEVGSCSHCGA 274
Query: 242 GAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEM 301
P + Q +RR++ +F I++S LVSAD AHGVHPN++++H+ +H P +
Sbjct: 275 DGPFLEQVLRRLL-------PEGDAFSRAIQRSLLVSADNAHGVHPNYADRHDANHGPAL 327
Query: 302 QKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGI 361
G VIK N+NQRYAT+ TA F+ + + +P Q FV R+DMGCGSTIGPI AS VG+
Sbjct: 328 NGGPVIKINSNQRYATNSETAGFFRHLCQDSEVPVQSFVTRSDMGCGSTIGPITASQVGV 387
Query: 362 RTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYES 398
RTVD G+ +MHS+RE+ G+ D+ + AFY S
Sbjct: 388 RTVDIGLPTFAMHSIRELAGSHDLAHLVKVLGAFYAS 424
>pdb|4EME|A Chain A, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|B Chain B, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|C Chain C, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
pdb|4EME|D Chain D, X-Ray Crystal Structure And Specificity Of The Plasmodium
Falciparum Malaria Aminopeptidase
Length = 571
Score = 151 bits (381), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 143/283 (50%), Gaps = 30/283 (10%)
Query: 150 LMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDS 209
L+ +LS+EL C +DI EL + DTQ C G EFI R DNL S+C I+
Sbjct: 281 LLYLLSKELNCKEEDILDFELCLMDTQEPCFTGVYEEFIEGARFDNLLGSFCVFEGFIEL 340
Query: 210 CVSPSN------------------LSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIR 251
S N + + + + +D+EE+GS S GA + I
Sbjct: 341 VNSIKNHTSNENTNHTNNITNDINDNIHNNLYISIGYDHEEIGSLSEVGARSYCTKNFID 400
Query: 252 RIVGSLAHEHVSETSFECT------IRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKGL 305
RI+ S+ + + E + + +SF+++ DMAH HPN+ E +++H+ +G+
Sbjct: 401 RIISSVFKKEIHEKNLSVQEIYGNLVNRSFILNVDMAHCSHPNYPETVQDNHQLFFHEGI 460
Query: 306 VIKHNANQRYATSGVTAFLFKEIAKLH------NLPTQEFVVRNDMGCGSTIGPILASGV 359
IK+N N+ Y TS + A L K +L+ + Q F+V+ND CGST+G ++A+ +
Sbjct: 461 AIKYNTNKNYVTSPLHASLIKRTFELYYNKYKQQIKYQNFMVKNDTPCGSTVGSMVAANL 520
Query: 360 GIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFYESFSSI 402
+ +D GI QL+MHS+REI D+ + AFY ++ +
Sbjct: 521 SMPGIDIGIPQLAMHSIREIAAVHDVFFLIKGVFAFYTYYNQV 563
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 4 LVAFAVGQKYSVGNGFHIIA-AHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLWHTWFD 62
+ F VG+ +++ G +I+ H D +NV+ YG GLWHTWFD
Sbjct: 65 ICGFFVGKNFNIDTGSILISIGHIDSCALKISPNNNVIKKKIHQINVECYGSGLWHTWFD 124
Query: 63 RDLTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHL-DRTVNKDGFKPNLETQLIPL 121
R L ++G+V+ + + + KL+++ + +L +P+LAIHL +RT K N E + P+
Sbjct: 125 RSLGLSGQVLYKKGN-KLVEKLIQINKSVLFLPSLAIHLQNRTRYDFSVKINYENHIKPI 183
Query: 122 LA 123
++
Sbjct: 184 IS 185
>pdb|1Y7E|A Chain A, The Crystal Structure Of Aminopeptidase I From Borrelia
Burgdorferi B31
Length = 458
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/399 (21%), Positives = 157/399 (39%), Gaps = 24/399 (6%)
Query: 5 VAFAVGQKYSVGNGFHIIAAHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLWHTWFDRD 64
VAFA+ K + +G + I +HTD + YGG + W
Sbjct: 75 VAFAIIGKNPIEDGXNFIVSHTDSPRLDAKPSPISEENELTFIKTNYYGGIKKYQWLSTP 134
Query: 65 LTVAGRVIVRGSDGSFLHKLVKVKRPLLRVPTLAIHLDRTVNKDGFKPNL-ETQLIPLLA 123
L++ G V ++ + ++ P+ +P + HLDR + ++ + E + + +L
Sbjct: 135 LSIRGVVFLKNGEKVEINIGDNENDPVFVIPDILPHLDRKIQRNKKSDEIVEGENLKILI 194
Query: 124 XXXXXXXXXXXXXXXXXXXXXXHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGA 183
+Q++ ++ +D S E+ I + G
Sbjct: 195 GSLPIETKEKNKVKLAT----------LQLIKEKYKIEEEDFVSSEIEIVPAGTAKDVGF 244
Query: 184 NNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGA 243
+ I + D+ + L ++ D +P+ + + L D EE+GS G +
Sbjct: 245 DKALIGAYGQDDKICVFTSLESIFDLEETPNKTA------ICFLVDKEEIGSTGSTGLDS 298
Query: 244 PTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQK 303
+ + + + + + + S +SAD+ ++P FS H+E + P++
Sbjct: 299 RYLEYFVSDXIFKIKKSEYNNLHVQKALWNSKSISADVCAAINPLFSSVHDEQNAPQLGY 358
Query: 304 GLVIKHNANQ--RYATSGVTAFLFKEIAKLHNLPTQEFVV----RNDMGCGSTIGPILAS 357
G+ I + S A L I +L N + V + + G G T+ LA
Sbjct: 359 GIPIXKYTGHGGKSMASDADAELVSYIRQLLNKNNIAWQVATLGKVEEGGGGTVAKFLA- 417
Query: 358 GVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAFY 396
G GIRT+D G A +S HS EI D+ AY +KAFY
Sbjct: 418 GYGIRTIDXGPAVISXHSPXEITSKFDLYNAYLAYKAFY 456
>pdb|2GLF|A Chain A, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|B Chain B, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|C Chain C, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
pdb|2GLF|D Chain D, Crystal Structure Of Aminipeptidase (m18 Family) From
Thermotoga Maritima
Length = 450
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 91/393 (23%), Positives = 153/393 (38%), Gaps = 38/393 (9%)
Query: 18 GFHIIAAHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLWHTWFDRDLTVAGRVIVRGSD 77
G +++ AH D + YGG + W L + G +
Sbjct: 85 GLNLVVAHIDSPRLDFKPNPLIEDEQIALFKTHYYGGIKKYHWLSIPLEIHGVLFKNDGT 144
Query: 78 GSFLHKLVKVKRPLLRVPTLAIHLDRTVNK--DGFKPN---LETQLIPLLAXXXXXXXXX 132
+H K + P+ +P L HLD+ K + FK L IPL
Sbjct: 145 EIEIHIGDKPEDPVFTIPDLLPHLDKEDAKISEKFKGENLXLIAGTIPLSGEEKEAVKT- 203
Query: 133 XXXXXXXXXXXXXHHPQLMQILSQELGCGTDDIASIELNICDTQPSCLGGANNEFIFSGR 192
+++IL++ G +D S E+ + G + I +
Sbjct: 204 ----------------NVLKILNEXYGITEEDFVSGEIEVVPAFSPREVGXDRSLIGAYG 247
Query: 193 LDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVGSDSYQGAGAPTMFQAIRR 252
D+ +Y LRAL+ + + E +I ++ FD EE+GSD GA A +A+R+
Sbjct: 248 QDDRICAYTALRALLSA-------NPEKSIGVI-FFDKEEIGSDGNTGAKARFYLKALRQ 299
Query: 253 IVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHRPEMQKG--LVIKHN 310
I+ + SE + + + ++S D+ V+P + + H+ H+ P++ G LV
Sbjct: 300 ILKXQGAKD-SEFVLDEVLENTSVISGDVCAAVNPPYKDVHDLHNAPKLGYGVALVKYTG 358
Query: 311 ANQRYATSGVTAFLFKEIAKLHNLPTQEFVV----RNDMGCGSTIGPILASGVGIRTVDC 366
A +Y+T+ A + K+ N + V + D G G TI A G +D
Sbjct: 359 ARGKYSTNDAHAEFVARVRKVLNEQGVIWQVATLGKVDQGGGGTIAKFFAE-RGSDVIDX 417
Query: 367 GIAQLSMHSVREICGTEDIDIAYRHFKAFYESF 399
G A L HS EI D+ Y +++ E
Sbjct: 418 GPALLGXHSPFEISSKADLFETYVAYRSLXEKL 450
>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
Length = 461
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 96/408 (23%), Positives = 162/408 (39%), Gaps = 46/408 (11%)
Query: 4 LVAFAVGQKYSVGNGFHIIAAHTDXXXXXXXXXXXXXXXGYLMVNVQTYGGGLWHTWFDR 63
L+ F +G K + GF I+ AH D M+ YGG + W
Sbjct: 81 LIMFLIG-KEPLYTGFKILGAHIDSPRLDLKQNPLYEDTDLAMLETHYYGGIKKYQWVTL 139
Query: 64 DLTVAGRVIVRGSDGSFLHKLV--KVKRPLLRVPTLAIHL-----DRTVNK--DGFKPNL 114
L + G VIV+ DG+ ++ V P+ V + +HL ++ +K +G N+
Sbjct: 140 PLAIHG-VIVK-KDGTIVNVCVGEDDNDPVFGVSDILVHLASEQLEKKASKVIEGEDLNI 197
Query: 115 ETQLIPLLAXXXXXXXXXXXXXXXXXXXXXXHHPQLMQILSQELGCGTDDIASIELNICD 174
IPL H+ +M+IL+++ +D S EL I
Sbjct: 198 LIGSIPL--------------KDGEEKQKVKHN--IMKILNEKYDISEEDFVSAELEIVP 241
Query: 175 TQPSCLGGANNEFIFSGRLDNLASSYCGLRALIDSCVSPSNLSSEHAIRMVALFDNEEVG 234
+ G + + D+ +Y A+++ + + + L D EEVG
Sbjct: 242 AGKARDYGFDRSMVMGYGQDDRICAYTSFEAMLE-------MKNAKKTCITILVDKEEVG 294
Query: 235 SDSYQGAGAPTMFQAIRRIVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHE 294
S G + + I+ SL ++ E + S ++S+D++ PN+ E
Sbjct: 295 SIGATGMQSKFFENTVADIM-SLCGDY-DELKLRKALYNSEMLSSDVSAAFDPNYPNVME 352
Query: 295 EHHRPEMQKGLVIKHNANQRYATSGVTAFLFKEIAKLHNLPTQEFVV-------RNDMGC 347
+ + + KG+V R SG + IA+L + ++E V + D G
Sbjct: 353 KRNSAYLGKGIVFNKYTGSR-GKSGCNDANPEYIAELRRILSKESVNWQTAELGKVDQGG 411
Query: 348 GSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTEDIDIAYRHFKAF 395
G TI ILA G++ +DCG+A L+ H+ EI DI + AF
Sbjct: 412 GGTIAYILAE-YGMQVIDCGVALLNXHAPWEISSKADIYETKNGYSAF 458
>pdb|2WZN|A Chain A, 3d Structure Of Tet3 From Pyrococcus Horikoshii
Length = 354
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 253 IVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHR--PEMQKGLVIKHN 310
IVGS+ E S+ ++ ++ + F+++ + + PE+ KG V+
Sbjct: 209 IVGSVQEE----VGLRGARVASYAINPEVGIAMDVTFAKQPHDKGKIVPELGKGPVMDVG 264
Query: 311 ANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ 370
N + AF E+AK + +P Q G + + I GV T I
Sbjct: 265 PN---INPKLRAFA-DEVAKKYEIPLQVEPSPRPTGTDANVMQINKEGVA--TAVLSIPI 318
Query: 371 LSMHSVREICGTEDIDIAYRHFKAFYESFSSID 403
MHS E+ D+D + KA E +D
Sbjct: 319 RYMHSQVELADARDVDNTIKLAKALLEELKPMD 351
>pdb|2PE3|A Chain A, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|B Chain B, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|C Chain C, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
pdb|2PE3|D Chain D, Crystal Structure Of Frv Operon Protein Frvx (Ph1821)from
Pyrococcus Horikoshii Ot3
Length = 354
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 12/153 (7%)
Query: 253 IVGSLAHEHVSETSFECTIRQSFLVSADMAHGVHPNFSEKHEEHHR--PEMQKGLVIKHN 310
IVGS+ E S+ ++ ++ + F+++ + + PE+ KG V+
Sbjct: 209 IVGSVQEE----VGLRGARVASYAINPEVGIAMDVTFAKQPHDKGKIVPELGKGPVMDVG 264
Query: 311 ANQRYATSGVTAFLFKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQ 370
N + AF E+AK + +P Q G + + I GV T I
Sbjct: 265 PN---INPKLRAFA-DEVAKKYEIPLQVEPSPRPTGTDANVMQINREGVA--TAVLSIPI 318
Query: 371 LSMHSVREICGTEDIDIAYRHFKAFYESFSSID 403
MHS E+ D+D + KA E +D
Sbjct: 319 RYMHSQVELADARDVDNTIKLAKALLEELKPMD 351
>pdb|2B39|A Chain A, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
pdb|2B39|B Chain B, Structure Of Mammalian C3 With An Intact Thioester At 3a
Resolution
Length = 1661
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 292 KHEEHHRPEMQKGLVIKHNANQRYATSGVT--AFLFKEIAKLHNLPTQEFVVRNDMGC 347
K E+HHRP Q L I+ + R V F+ + KL + V + D+GC
Sbjct: 568 KEEKHHRPGQQITLKIEADQGARVGLVAVDKGVFVLNKKNKLTQRKIWDVVEKADIGC 625
>pdb|1XFO|A Chain A, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|B Chain B, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|C Chain C, Crystal Structure Of An Archaeal Aminopeptidase
pdb|1XFO|D Chain D, Crystal Structure Of An Archaeal Aminopeptidase
Length = 357
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 325 FKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTED 384
+E+AK H +P Q ++ +G G+ G I + G+ T + +HS E+ D
Sbjct: 281 LEELAKKHEIPYQLEIL---LGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERD 337
Query: 385 ID 386
+D
Sbjct: 338 VD 339
>pdb|1Y0R|A Chain A, Crystal Structure Of The Tetrahedral Aminopeptidase From
P. Horikoshii
pdb|1Y0Y|A Chain A, Crystal Structure Of Tetrahedral Aminopeptidase From P.
Horikoshii In Complex With Amastatin
Length = 353
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 325 FKEIAKLHNLPTQEFVVRNDMGCGSTIGPILASGVGIRTVDCGIAQLSMHSVREICGTED 384
+E+AK H +P Q ++ +G G+ G I + G+ T + +HS E+ D
Sbjct: 277 LEELAKKHEIPYQLEIL---LGGGTDAGAIHLTKAGVPTGALSVPARYIHSNTEVVDERD 333
Query: 385 ID 386
+D
Sbjct: 334 VD 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,099,901
Number of Sequences: 62578
Number of extensions: 418187
Number of successful extensions: 940
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 911
Number of HSP's gapped (non-prelim): 15
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)