Query 015251
Match_columns 410
No_of_seqs 156 out of 1748
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:32:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.3E-35 2.9E-40 267.3 26.2 223 123-378 1-230 (230)
2 PF08268 FBA_3: F-box associat 99.7 1.8E-16 4E-21 129.0 15.0 115 234-364 1-118 (129)
3 PF07734 FBA_1: F-box associat 99.7 4.8E-16 1E-20 132.0 18.0 152 234-400 1-164 (164)
4 PLN03215 ascorbic acid mannose 99.5 6.2E-12 1.3E-16 117.7 25.2 331 22-401 1-372 (373)
5 PHA02713 hypothetical protein; 99.0 3.5E-08 7.6E-13 100.0 20.5 219 123-389 299-546 (557)
6 PF12937 F-box-like: F-box-lik 98.9 1.2E-09 2.6E-14 71.8 2.4 41 25-65 1-41 (47)
7 KOG4441 Proteins containing BT 98.9 2.2E-07 4.7E-12 94.0 19.9 213 123-385 328-555 (571)
8 PHA03098 kelch-like protein; P 98.8 9.3E-07 2E-11 89.8 22.4 196 139-384 311-519 (534)
9 PHA02713 hypothetical protein; 98.8 5.9E-07 1.3E-11 91.1 20.2 134 140-297 273-407 (557)
10 PLN02153 epithiospecifier prot 98.8 3.9E-06 8.4E-11 80.2 23.8 207 139-386 50-294 (341)
11 PHA02790 Kelch-like protein; P 98.7 2E-06 4.3E-11 85.9 21.8 184 139-382 287-476 (480)
12 PLN02193 nitrile-specifier pro 98.7 5.1E-06 1.1E-10 82.8 23.1 206 139-385 193-419 (470)
13 PF00646 F-box: F-box domain; 98.7 3.2E-09 7E-14 70.1 0.2 44 25-68 3-46 (48)
14 smart00256 FBOX A Receptor for 98.7 8.8E-09 1.9E-13 65.5 1.5 39 28-66 1-39 (41)
15 KOG4441 Proteins containing BT 98.6 3.2E-06 6.9E-11 85.7 19.6 199 139-384 301-507 (571)
16 TIGR03547 muta_rot_YjhT mutatr 98.5 2.9E-05 6.4E-10 74.3 23.1 180 125-321 15-236 (346)
17 TIGR03548 mutarot_permut cycli 98.5 4.2E-05 9E-10 72.5 23.9 155 140-320 40-202 (323)
18 PRK14131 N-acetylneuraminic ac 98.4 0.00011 2.3E-09 71.3 23.4 183 123-322 34-258 (376)
19 PRK14131 N-acetylneuraminic ac 98.4 0.00032 6.9E-09 68.0 26.5 92 206-297 189-288 (376)
20 PHA02790 Kelch-like protein; P 98.4 2.4E-05 5.2E-10 78.2 18.2 141 123-297 314-455 (480)
21 PLN02193 nitrile-specifier pro 98.3 0.00012 2.6E-09 73.0 21.8 159 206-386 193-361 (470)
22 PLN02153 epithiospecifier prot 98.3 0.00019 4.2E-09 68.5 21.4 112 206-319 50-174 (341)
23 TIGR03547 muta_rot_YjhT mutatr 98.3 0.00083 1.8E-08 64.3 25.3 92 206-297 168-266 (346)
24 PHA03098 kelch-like protein; P 98.3 0.00017 3.7E-09 73.3 21.6 174 123-321 338-520 (534)
25 TIGR03548 mutarot_permut cycli 98.2 0.00014 3E-09 68.9 18.8 152 123-297 119-312 (323)
26 KOG4693 Uncharacterized conser 97.7 0.0012 2.5E-08 58.4 12.8 113 206-320 157-284 (392)
27 KOG1230 Protein containing rep 97.4 0.0051 1.1E-07 57.8 13.6 171 139-324 98-292 (521)
28 KOG0281 Beta-TrCP (transducin 97.3 0.0011 2.4E-08 60.5 8.6 45 23-67 73-121 (499)
29 KOG2120 SCF ubiquitin ligase, 97.3 9.2E-05 2E-09 66.7 1.6 39 24-62 97-135 (419)
30 KOG0379 Kelch repeat-containin 96.8 0.17 3.6E-06 50.7 19.6 163 139-323 139-312 (482)
31 KOG4693 Uncharacterized conser 96.5 0.023 5E-07 50.4 9.5 157 206-388 105-288 (392)
32 KOG0379 Kelch repeat-containin 96.0 0.86 1.9E-05 45.7 19.3 158 140-318 89-255 (482)
33 KOG2997 F-box protein FBX9 [Ge 95.9 0.0029 6.3E-08 57.4 0.8 45 25-69 107-156 (366)
34 PF13964 Kelch_6: Kelch motif 95.3 0.044 9.5E-07 35.9 4.8 39 232-270 5-44 (50)
35 KOG1230 Protein containing rep 94.3 1.5 3.2E-05 41.8 13.5 135 254-402 98-246 (521)
36 PF01344 Kelch_1: Kelch motif; 93.8 0.14 3.1E-06 32.8 4.5 38 232-269 5-43 (47)
37 PF13964 Kelch_6: Kelch motif 92.8 0.29 6.2E-06 31.9 4.7 22 138-159 27-48 (50)
38 COG4257 Vgb Streptogramin lyas 92.3 1.2 2.6E-05 40.3 9.1 123 122-274 194-317 (353)
39 PF07762 DUF1618: Protein of u 92.2 1.3 2.7E-05 35.8 8.7 71 254-324 6-98 (131)
40 PF07646 Kelch_2: Kelch motif; 91.8 0.54 1.2E-05 30.5 5.1 41 232-272 5-48 (49)
41 PF07893 DUF1668: Protein of u 89.5 7.7 0.00017 37.0 12.6 117 138-273 85-221 (342)
42 PF08450 SGL: SMP-30/Gluconola 88.8 17 0.00037 32.5 23.6 203 124-386 8-223 (246)
43 KOG4341 F-box protein containi 87.9 0.22 4.7E-06 47.5 1.0 41 22-62 69-109 (483)
44 PF07893 DUF1668: Protein of u 87.8 13 0.00029 35.3 13.1 83 207-296 200-296 (342)
45 PLN02772 guanylate kinase 85.9 6.6 0.00014 37.9 9.7 75 231-309 27-107 (398)
46 COG2706 3-carboxymuconate cycl 85.3 33 0.00072 32.3 16.4 124 238-386 155-286 (346)
47 PF13418 Kelch_4: Galactose ox 84.9 1.4 3E-05 28.4 3.3 37 233-269 6-44 (49)
48 PF13360 PQQ_2: PQQ-like domai 84.1 29 0.00062 30.5 18.2 103 126-266 35-144 (238)
49 PRK11138 outer membrane biogen 82.9 27 0.00058 33.9 13.0 113 233-382 64-184 (394)
50 PF01344 Kelch_1: Kelch motif; 81.3 2.3 4.9E-05 27.0 3.3 21 205-225 27-47 (47)
51 PF07250 Glyoxal_oxid_N: Glyox 80.5 44 0.00095 30.1 12.8 172 206-403 46-223 (243)
52 TIGR01640 F_box_assoc_1 F-box 80.4 41 0.00089 29.7 13.5 31 236-273 3-33 (230)
53 smart00612 Kelch Kelch domain. 79.3 2.3 5.1E-05 26.6 2.9 23 206-228 15-37 (47)
54 PF10282 Lactonase: Lactonase, 77.3 68 0.0015 30.5 16.3 123 238-385 154-286 (345)
55 PF13418 Kelch_4: Galactose ox 76.8 2.9 6.3E-05 26.8 2.7 20 139-158 29-48 (49)
56 smart00612 Kelch Kelch domain. 75.8 9.8 0.00021 23.5 5.1 23 139-161 15-37 (47)
57 PF13415 Kelch_3: Galactose ox 75.4 6.3 0.00014 25.3 4.1 32 238-269 1-34 (49)
58 KOG0274 Cdc4 and related F-box 75.0 1.1 2.3E-05 45.5 0.3 47 21-67 104-150 (537)
59 PF13415 Kelch_3: Galactose ox 73.2 5.9 0.00013 25.5 3.5 23 139-161 19-41 (49)
60 PF10282 Lactonase: Lactonase, 72.1 92 0.002 29.6 26.2 146 206-384 166-332 (345)
61 PF13360 PQQ_2: PQQ-like domai 71.1 72 0.0016 27.9 16.0 141 206-384 3-148 (238)
62 TIGR03300 assembly_YfgL outer 70.8 85 0.0018 30.1 12.5 27 233-265 60-86 (377)
63 PF13013 F-box-like_2: F-box-l 69.1 2.4 5.2E-05 32.9 1.0 30 24-53 21-50 (109)
64 KOG2055 WD40 repeat protein [G 69.0 1.2E+02 0.0026 29.7 13.6 114 236-385 266-383 (514)
65 PF07646 Kelch_2: Kelch motif; 68.8 9.1 0.0002 24.6 3.7 20 205-224 29-48 (49)
66 PF13570 PQQ_3: PQQ-like domai 68.6 9.4 0.0002 23.3 3.5 26 232-263 15-40 (40)
67 COG1520 FOG: WD40-like repeat 68.3 1.1E+02 0.0025 29.2 13.4 113 234-383 64-178 (370)
68 cd01206 Homer Homer type EVH1 66.7 23 0.0005 27.3 5.8 40 139-184 11-51 (111)
69 smart00564 PQQ beta-propeller 65.5 17 0.00037 20.7 4.1 25 358-382 6-30 (33)
70 PRK11138 outer membrane biogen 65.4 1.4E+02 0.0029 29.0 20.0 137 206-380 170-316 (394)
71 PF06433 Me-amine-dh_H: Methyl 64.1 1.3E+02 0.0029 28.5 13.7 118 233-382 188-326 (342)
72 KOG4152 Host cell transcriptio 62.9 91 0.002 31.1 10.4 89 139-246 57-154 (830)
73 PRK11028 6-phosphogluconolacto 61.1 1.4E+02 0.0031 27.8 18.5 147 206-384 57-215 (330)
74 TIGR03075 PQQ_enz_alc_DH PQQ-d 59.5 2.1E+02 0.0045 29.2 13.1 78 232-319 63-147 (527)
75 PF01011 PQQ: PQQ enzyme repea 58.8 21 0.00046 21.5 3.7 26 360-385 2-27 (38)
76 PF03088 Str_synth: Strictosid 57.6 25 0.00055 26.2 4.6 18 367-384 36-53 (89)
77 PF05096 Glu_cyclase_2: Glutam 56.4 1.6E+02 0.0035 26.9 13.2 106 237-380 54-161 (264)
78 KOG2502 Tub family proteins [G 56.2 7.8 0.00017 36.3 2.1 39 23-61 43-89 (355)
79 KOG4152 Host cell transcriptio 55.0 1.7E+02 0.0037 29.3 10.8 127 169-309 206-362 (830)
80 PF02191 OLF: Olfactomedin-lik 52.6 1.8E+02 0.0039 26.3 16.3 39 231-274 71-110 (250)
81 PF08450 SGL: SMP-30/Gluconola 49.4 1.9E+02 0.0041 25.6 16.1 31 238-273 11-41 (246)
82 PRK05137 tolB translocation pr 49.0 2.7E+02 0.0059 27.3 20.5 140 138-309 225-365 (435)
83 cd01207 Ena-Vasp Enabled-VASP- 48.1 55 0.0012 25.5 5.3 42 139-183 9-50 (111)
84 KOG0310 Conserved WD40 repeat- 44.9 3.2E+02 0.007 27.0 16.2 179 145-385 8-193 (487)
85 PF08268 FBA_3: F-box associat 44.1 62 0.0013 25.6 5.4 47 358-404 5-60 (129)
86 COG2706 3-carboxymuconate cycl 42.6 3E+02 0.0066 26.1 27.7 152 206-385 167-332 (346)
87 TIGR03074 PQQ_membr_DH membran 40.4 5E+02 0.011 27.9 15.4 32 231-268 187-220 (764)
88 TIGR03075 PQQ_enz_alc_DH PQQ-d 40.2 4.2E+02 0.0091 27.0 16.6 67 206-272 130-201 (527)
89 KOG1963 WD40 repeat protein [G 37.3 2.9E+02 0.0063 29.4 9.9 66 296-382 475-545 (792)
90 KOG0291 WD40-repeat-containing 36.6 5.5E+02 0.012 27.3 13.1 77 232-308 249-338 (893)
91 PF13859 BNR_3: BNR repeat-lik 32.4 2.8E+02 0.006 26.1 8.4 85 230-319 122-212 (310)
92 COG3055 Uncharacterized protei 31.7 84 0.0018 29.9 4.7 64 207-270 59-129 (381)
93 COG3386 Gluconolactonase [Carb 31.3 4.4E+02 0.0096 24.7 12.4 32 238-274 36-67 (307)
94 PF12768 Rax2: Cortical protei 30.7 1.8E+02 0.0039 26.9 6.7 62 205-271 15-81 (281)
95 PF15408 PH_7: Pleckstrin homo 30.5 18 0.00038 26.4 0.1 25 42-66 76-100 (104)
96 KOG0315 G-protein beta subunit 29.6 4.3E+02 0.0094 24.0 13.3 144 206-383 146-295 (311)
97 PRK11028 6-phosphogluconolacto 28.8 4.8E+02 0.01 24.2 21.4 107 253-384 196-314 (330)
98 cd00216 PQQ_DH Dehydrogenases 27.5 6.4E+02 0.014 25.3 15.1 79 235-320 106-193 (488)
99 KOG3926 F-box proteins [Amino 27.4 38 0.00082 30.7 1.6 43 19-61 196-239 (332)
100 TIGR03300 assembly_YfgL outer 26.9 5.5E+02 0.012 24.4 16.8 134 206-382 200-344 (377)
101 PF02897 Peptidase_S9_N: Proly 25.7 6.1E+02 0.013 24.5 19.5 147 206-384 252-412 (414)
102 TIGR03866 PQQ_ABC_repeats PQQ- 25.5 4.8E+02 0.01 23.2 22.8 120 238-389 167-293 (300)
103 PF06058 DCP1: Dcp1-like decap 25.4 97 0.0021 24.6 3.5 30 361-390 22-51 (122)
104 PF05096 Glu_cyclase_2: Glutam 25.3 5.3E+02 0.011 23.6 15.8 143 205-384 67-211 (264)
105 PF14157 YmzC: YmzC-like prote 25.1 1.1E+02 0.0023 21.1 3.1 16 369-384 42-57 (63)
106 COG3055 Uncharacterized protei 24.3 2.3E+02 0.0049 27.1 6.1 70 205-275 195-269 (381)
107 PF00568 WH1: WH1 domain; Int 23.9 2.9E+02 0.0062 21.3 5.9 37 140-183 17-54 (111)
108 smart00284 OLF Olfactomedin-li 22.7 5.8E+02 0.013 23.2 16.6 74 231-309 76-160 (255)
109 KOG2048 WD40 repeat protein [G 22.5 7.4E+02 0.016 25.8 9.6 99 253-382 450-554 (691)
110 PF08683 CAMSAP_CKK: Microtubu 22.2 2.6E+02 0.0056 22.2 5.3 56 127-182 49-107 (123)
111 PF03178 CPSF_A: CPSF A subuni 22.0 6.4E+02 0.014 23.4 13.6 104 254-392 62-175 (321)
112 PF07433 DUF1513: Protein of u 21.5 6.8E+02 0.015 23.5 19.2 63 206-269 28-91 (305)
113 cd00260 Sialidase Sialidases o 21.3 6.8E+02 0.015 23.4 11.4 88 232-322 149-241 (351)
114 KOG2048 WD40 repeat protein [G 21.3 6.8E+02 0.015 26.1 9.1 74 284-382 31-104 (691)
115 smart00135 LY Low-density lipo 20.7 1.8E+02 0.0039 17.1 3.5 23 236-263 18-40 (43)
116 COG1520 FOG: WD40-like repeat 20.3 7.5E+02 0.016 23.5 15.7 107 207-324 122-231 (370)
117 PF09372 PRANC: PRANC domain; 20.3 57 0.0012 24.5 1.3 24 23-46 70-93 (97)
118 PF02239 Cytochrom_D1: Cytochr 20.2 7.8E+02 0.017 23.7 18.6 187 138-383 15-209 (369)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1.3e-35 Score=267.31 Aligned_cols=223 Identities=25% Similarity=0.403 Sum_probs=164.7
Q ss_pred EeccCceEEEeeccCCceEEEEcccccceeeCCCCCCC--CCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccc
Q 015251 123 VGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQY--PDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRR 200 (410)
Q Consensus 123 ~~s~~Gll~l~~~~~~~~~~V~NP~T~~~~~LP~~~~~--~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 200 (410)
++|||||||+... ..++||||+||+++.||+++.. .......+||||+.+++||||++..... +.
T Consensus 1 ~~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~----~~------ 67 (230)
T TIGR01640 1 VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG----NR------ 67 (230)
T ss_pred CcccceEEEEecC---CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecC----CC------
Confidence 4799999999863 6899999999999999976531 1112368999999999999999965321 10
Q ss_pred cccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceee-EEcCCCCCCCCC
Q 015251 201 VIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFR-EVPKPDCGGLNR 279 (410)
Q Consensus 201 ~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~-~i~lP~~~~~~~ 279 (410)
....++||++++++||.+...+........+|++||++||+...........|++||+++|+|+ .|++|.......
T Consensus 68 ---~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~ 144 (230)
T TIGR01640 68 ---NQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSV 144 (230)
T ss_pred ---CCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccc
Confidence 1368999999999999987433222223349999999999997521111138999999999999 599997543222
Q ss_pred cceEEEEeCCeEEEEEeCC-CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccC
Q 015251 280 CNYHLTVLSGCLSVAVYGN-YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEK 358 (410)
Q Consensus 280 ~~~~l~~~~G~L~~~~~~~-~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (410)
....|++++|+||++.... ...++||+|++++ +..|++.++|++.....+ .. ...++++.++
T Consensus 145 ~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~-~~~W~k~~~i~~~~~~~~---------------~~-~~~~~~~~~~ 207 (230)
T TIGR01640 145 DYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAG-KQEWSKLFTVPIPPLPDL---------------VD-DNFLSGFTDK 207 (230)
T ss_pred cceEEEEECCEEEEEEecCCCCcEEEEEECCCC-CCceeEEEEEcCcchhhh---------------hh-heeEeEEeeC
Confidence 3467999999999998753 3569999999987 456999999986211100 01 1458889999
Q ss_pred CcEEEEecC--CE-EEEEeCCCC
Q 015251 359 GEILLEYKS--RV-LVSYDPKRR 378 (410)
Q Consensus 359 g~il~~~~~--~~-l~~yd~~~~ 378 (410)
|+|++.... +. ++.||++++
T Consensus 208 g~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 208 GEIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred CEEEEEeCCCCceEEEEEeccCC
Confidence 999997664 44 999999875
No 2
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.72 E-value=1.8e-16 Score=129.01 Aligned_cols=115 Identities=26% Similarity=0.465 Sum_probs=87.0
Q ss_pred ceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEEEEeCCC---CeEEEEEEeeC
Q 015251 234 EALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNY---GKLEIWVMKDY 310 (410)
Q Consensus 234 ~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~---~~l~IW~l~~~ 310 (410)
|+++||++||++.. .......|++||+.+|+|+.|++|...........|++++|+|+++..... ..++||+|+|+
T Consensus 1 gicinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~ 79 (129)
T PF08268_consen 1 GICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDY 79 (129)
T ss_pred CEEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeecc
Confidence 58999999999976 334568999999999999999999322233456789999999999987543 35999999998
Q ss_pred CCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEE
Q 015251 311 NVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLE 364 (410)
Q Consensus 311 ~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~ 364 (410)
+ +++|++++.+-.... ........+.+.++.++|||++.
T Consensus 80 ~-k~~Wsk~~~~lp~~~--------------~~~~~~~~~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 80 E-KQEWSKKHIVLPPSW--------------QHFVHDCDFSFVGVTDTGEIVFA 118 (129)
T ss_pred c-cceEEEEEEECChHH--------------hcccCCcEEEEEEEcCCCEEEEE
Confidence 7 689998766433111 00111246788999999999887
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.72 E-value=4.8e-16 Score=132.01 Aligned_cols=152 Identities=28% Similarity=0.412 Sum_probs=101.3
Q ss_pred ceEECCeEEEEecCCCCCCCceEEEEEcCCcee-eEEcCCCCCCCCCcceEEEEe-CCeEEEEEeC-CCCeEEEEEEeeC
Q 015251 234 EALVKGRLHWVTRPRRYSPVRGIVSFDIADEQF-REVPKPDCGGLNRCNYHLTVL-SGCLSVAVYG-NYGKLEIWVMKDY 310 (410)
Q Consensus 234 ~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~l~~~-~G~L~~~~~~-~~~~l~IW~l~~~ 310 (410)
+|++||++||++..........|++||+.+|+| +.+++|...........|.++ +|+||++... ....++||+|+++
T Consensus 1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMKKY 80 (164)
T ss_pred CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEeee
Confidence 589999999999874333333899999999999 889999765533445667555 6799999754 3456999999976
Q ss_pred CC-CCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec-C------CEEEEEeCCCCcEEE
Q 015251 311 NV-KESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK-S------RVLVSYDPKRRTFNE 382 (410)
Q Consensus 311 ~~-~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~-~------~~l~~yd~~~~~~~~ 382 (410)
+. +++|++.++|++........ .. ....+.+.+++++++... . ..++.|+ +++.+++
T Consensus 81 ~~~~~SWtK~~~i~~~~~~~~~~------~~--------~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~ 145 (164)
T PF07734_consen 81 GYGKESWTKLFTIDLPPLPSLFF------HF--------RNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIE 145 (164)
T ss_pred ccCcceEEEEEEEecCCCCCccc------cc--------ccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEE
Confidence 52 78999999999631111000 00 011122344556655421 1 3577888 7788888
Q ss_pred EEEeCC-CCeEEEEEeecC
Q 015251 383 FVFKGT-PNWFQTIVHQGS 400 (410)
Q Consensus 383 v~~~~~-~~~~~~~~y~~s 400 (410)
+.+... ..+.....|+||
T Consensus 146 ~~~~~~~~~~~~~~~YvpS 164 (164)
T PF07734_consen 146 VDIEDKSSCWPSICNYVPS 164 (164)
T ss_pred cccccCCCCCCCEEEECCC
Confidence 887433 245566789887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.53 E-value=6.2e-12 Score=117.72 Aligned_cols=331 Identities=13% Similarity=0.131 Sum_probs=164.5
Q ss_pred CCCCCCCcHHHHHHHHccCC-cccccceecccHhhHhhhCChhhhhhhhccCCCCCCCCCeEEEeecCCCCceEEEEeCC
Q 015251 22 ATGMETLPREIVLHILLRLP-ITSLVQFKFVCRAWRALAQDPLLANLHNTTSTSKAEKNPCLILHCDFPIRNQLCFIDFS 100 (410)
Q Consensus 22 ~~~~~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~li~s~~F~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~ 100 (410)
++.|+.||+|||..|..||| ..+++|||+|||+||+.+.... +. .....+|++++....|..+ +...+.
T Consensus 1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~- 70 (373)
T PLN03215 1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KK-----NPFRTRPLILFNPINPSET-LTDDRS- 70 (373)
T ss_pred CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---cc-----CCcccccccccCcccCCCC-cccccc-
Confidence 35799999999999999997 6699999999999999886421 00 0012235554432111111 100000
Q ss_pred CCccccccccCCCCCCCCCeEE---EeccCceEEEeecc-CCceEEEEcccccceeeCCCCCC----CC--CCceEEEE-
Q 015251 101 DNQDKVRKFNMPFQAKMPEFDA---VGSCNGLLCLSDSL-FNDAICIYNPFTRDYIELPKSMQ----YP--DQEVVFGF- 169 (410)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~---~~s~~Gll~l~~~~-~~~~~~V~NP~T~~~~~LP~~~~----~~--~~~~~~~l- 169 (410)
..... ..+.....-+.+ .++.+|+|...... ..+.+.+.||+++....+|+... +. .......+
T Consensus 71 ----~~~~~-~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~ 145 (373)
T PLN03215 71 ----YISRP-GAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL 145 (373)
T ss_pred ----ccccc-cceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence 00000 000000000111 13568888775432 45789999999999888875211 00 00011111
Q ss_pred EEeCC---CCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEec
Q 015251 170 GFHPV---SKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTR 246 (410)
Q Consensus 170 ~~d~~---~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~ 246 (410)
+.+.. ...|+-+.+.....+. +.++... ....... +.-.+.++|..++..... ...-|+.+|.+|-+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vl--~i~~~g~--l~~w~~~~Wt~l~~~~~~---~~DIi~~kGkfYAvD~ 217 (373)
T PLN03215 146 DWAKRRETRPGYQRSALVKVKEGD-NHRDGVL--GIGRDGK--INYWDGNVLKALKQMGYH---FSDIIVHKGQTYALDS 217 (373)
T ss_pred ecccccccccceeEEEEEEeecCC-CcceEEE--EEeecCc--EeeecCCeeeEccCCCce---eeEEEEECCEEEEEcC
Confidence 11111 1124212221121110 1011000 0000011 111235788888643332 3446899999999865
Q ss_pred CCCCCCCceEEEEEcCCceeeEEcCCCC----CCCCCcceEEEEeCCeEEEEEeC----------------CCCeEEEEE
Q 015251 247 PRRYSPVRGIVSFDIADEQFREVPKPDC----GGLNRCNYHLTVLSGCLSVAVYG----------------NYGKLEIWV 306 (410)
Q Consensus 247 ~~~~~~~~~Il~fDl~~e~~~~i~lP~~----~~~~~~~~~l~~~~G~L~~~~~~----------------~~~~l~IW~ 306 (410)
. +.+.++|.+-+ ...+..+-. .+.......|++..|.|.+|... ....++|+.
T Consensus 218 ~------G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~Vfk 290 (373)
T PLN03215 218 I------GIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYK 290 (373)
T ss_pred C------CeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEE
Confidence 4 67777774322 122211100 01111246799999999988641 013589999
Q ss_pred EeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEE--E-ccCCcEEEEecCCEEEEEeCCCCcEEEE
Q 015251 307 MKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVC--I-LEKGEILLEYKSRVLVSYDPKRRTFNEF 383 (410)
Q Consensus 307 l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~g~il~~~~~~~l~~yd~~~~~~~~v 383 (410)
++.. ...|++..+++-. .+. ++.. ..+.+.+ . .-.++-++...+.....||++.++...+
T Consensus 291 lD~~--~~~WveV~sLgd~---aLF--lG~~----------~s~sv~a~e~pG~k~NcIYFtdd~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 291 FDDE--LAKWMEVKTLGDN---AFV--MATD----------TCFSVLAHEFYGCLPNSIYFTEDTMPKVFKLDNGNGSSI 353 (373)
T ss_pred EcCC--CCcEEEecccCCe---EEE--EECC----------ccEEEecCCCCCccCCEEEEECCCcceEEECCCCCccce
Confidence 8753 4689998876531 110 0000 0111111 1 1124555555656678999999997766
Q ss_pred EEe---CCCCeEEEEEeecCc
Q 015251 384 VFK---GTPNWFQTIVHQGSF 401 (410)
Q Consensus 384 ~~~---~~~~~~~~~~y~~sl 401 (410)
... ...++|+ ++..|+
T Consensus 354 ~~~~~~~~~~~~~--~~~~~~ 372 (373)
T PLN03215 354 ETTISESSQSSFE--MFVPSF 372 (373)
T ss_pred EeecCccccchhe--eecccc
Confidence 543 2234554 455554
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.01 E-value=3.5e-08 Score=99.96 Aligned_cols=219 Identities=9% Similarity=0.084 Sum_probs=132.8
Q ss_pred EeccCceEEEeeccC-----CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccc
Q 015251 123 VGSCNGLLCLSDSLF-----NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQR 197 (410)
Q Consensus 123 ~~s~~Gll~l~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 197 (410)
++..+|-|.+..+.. .+.++.+||.+++|..+|+.+..+.... +..++ -++..++.... ..
T Consensus 299 ~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~~~~-----g~IYviGG~~~----~~--- 364 (557)
T PHA02713 299 SAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAVID-----DTIYAIGGQNG----TN--- 364 (557)
T ss_pred EEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EEEEC-----CEEEEECCcCC----CC---
Confidence 455566665544321 2468899999999999998775432222 22232 36666644211 11
Q ss_pred ccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCC------------------CCCceEEEE
Q 015251 198 TRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRY------------------SPVRGIVSF 259 (410)
Q Consensus 198 ~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~------------------~~~~~Il~f 259 (410)
....+++|++.+++|..++.+|..... ..++.++|.+|.+...... .....+.+|
T Consensus 365 ------~~~sve~Ydp~~~~W~~~~~mp~~r~~-~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~Y 437 (557)
T PHA02713 365 ------VERTIECYTMGDDKWKMLPDMPIALSS-YGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRY 437 (557)
T ss_pred ------CCceEEEEECCCCeEEECCCCCccccc-ccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEE
Confidence 125799999999999999877765432 3456889999999865211 013579999
Q ss_pred EcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCC-C-CceeeEEEeccCcCcccccccCC
Q 015251 260 DIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNV-K-ESWAKELNIGAYIPKGLKQSLDR 336 (410)
Q Consensus 260 Dl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~-~-~~W~~~~~i~~~~p~~~~~~~~~ 336 (410)
|+.+++|..++ +|... ....+++++|+|++++..+......=..+-|.. . ..|+..-.+.. ++.
T Consensus 438 DP~td~W~~v~~m~~~r----~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~--~r~------- 504 (557)
T PHA02713 438 DTVNNIWETLPNFWTGT----IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES--RLS------- 504 (557)
T ss_pred CCCCCeEeecCCCCccc----ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc--ccc-------
Confidence 99999999873 33221 234578999999999764321110001223332 3 47998654332 110
Q ss_pred cchhhcccCCCceeEEEEEccCCcEEEEecC---CEEEEEeCCCCcEEEEEEeCCC
Q 015251 337 PLKIWKNSLNGRVVRVVCILEKGEILLEYKS---RVLVSYDPKRRTFNEFVFKGTP 389 (410)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~---~~l~~yd~~~~~~~~v~~~~~~ 389 (410)
... ...-+|.|++..+. ..+-.||+.|++|+.+.=+...
T Consensus 505 ------------~~~--~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 505 ------------ALH--TILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred ------------cce--eEEECCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 111 11225666665432 2477999999999988755444
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.86 E-value=1.2e-09 Score=71.75 Aligned_cols=41 Identities=39% Similarity=0.724 Sum_probs=35.7
Q ss_pred CCCCcHHHHHHHHccCCcccccceecccHhhHhhhCChhhh
Q 015251 25 METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLA 65 (410)
Q Consensus 25 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~ 65 (410)
+..||+|++.+||++||++++.++++|||+|+.++.++.+-
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW 41 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW 41 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence 46899999999999999999999999999999999888443
No 7
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.86 E-value=2.2e-07 Score=94.04 Aligned_cols=213 Identities=15% Similarity=0.201 Sum_probs=135.8
Q ss_pred EeccCceEEEeeccC-----CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccc
Q 015251 123 VGSCNGLLCLSDSLF-----NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQR 197 (410)
Q Consensus 123 ~~s~~Gll~l~~~~~-----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~ 197 (410)
++..+|.|....+.. .+....+||.+.+|..+|+....+....++.+ ..++.+++.... ..+
T Consensus 328 ~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l-------~g~iYavGG~dg----~~~-- 394 (571)
T KOG4441|consen 328 VAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL-------DGKLYAVGGFDG----EKS-- 394 (571)
T ss_pred EEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE-------CCEEEEEecccc----ccc--
Confidence 566677775554432 24789999999999999998765533222222 256666654321 111
Q ss_pred ccccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCC-CCceEEEEEcCCceeeEE-cCCCCC
Q 015251 198 TRRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYS-PVRGIVSFDIADEQFREV-PKPDCG 275 (410)
Q Consensus 198 ~~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~Il~fDl~~e~~~~i-~lP~~~ 275 (410)
...+|.|+..+++|..++.++. .......+.++|.+|-+....... ....+.+||+.+++|+.+ +++...
T Consensus 395 -------l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R 466 (571)
T KOG4441|consen 395 -------LNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR 466 (571)
T ss_pred -------cccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc
Confidence 2579999999999999987766 333455678999999998864333 457899999999999987 444322
Q ss_pred CCCCcceEEEEeCCeEEEEEeCCC-CeEEEEEEeeCC-CCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEE
Q 015251 276 GLNRCNYHLTVLSGCLSVAVYGNY-GKLEIWVMKDYN-VKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVV 353 (410)
Q Consensus 276 ~~~~~~~~l~~~~G~L~~~~~~~~-~~l~IW~l~~~~-~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (410)
....+++++|+|+++...+. ..++- .+-|. ....|+..-.+.. ++. .+-
T Consensus 467 ----~~~g~a~~~~~iYvvGG~~~~~~~~~--VE~ydp~~~~W~~v~~m~~--~rs---------------------~~g 517 (571)
T KOG4441|consen 467 ----SGFGVAVLNGKIYVVGGFDGTSALSS--VERYDPETNQWTMVAPMTS--PRS---------------------AVG 517 (571)
T ss_pred ----ccceEEEECCEEEEECCccCCCccce--EEEEcCCCCceeEcccCcc--ccc---------------------ccc
Confidence 23458999999999986532 11221 22221 2467988743322 110 011
Q ss_pred EEccCCcEEEEec------CCEEEEEeCCCCcEEEEEE
Q 015251 354 CILEKGEILLEYK------SRVLVSYDPKRRTFNEFVF 385 (410)
Q Consensus 354 ~~~~~g~il~~~~------~~~l~~yd~~~~~~~~v~~ 385 (410)
+..-++.+++.-+ -..+-.||+++++|+.+.-
T Consensus 518 ~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 518 VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred EEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 1222445544321 2468899999999998753
No 8
>PHA03098 kelch-like protein; Provisional
Probab=98.81 E-value=9.3e-07 Score=89.81 Aligned_cols=196 Identities=15% Similarity=0.199 Sum_probs=121.4
Q ss_pred ceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCce
Q 015251 139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAW 218 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~W 218 (410)
..++.+||.|++|..+|+.+..+.....+ ..+ =++..++.... +. ....+++|+..+++|
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~-----~~lyv~GG~~~----~~---------~~~~v~~yd~~~~~W 370 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFN-----NRIYVIGGIYN----SI---------SLNTVESWKPGESKW 370 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEE--EEC-----CEEEEEeCCCC----CE---------ecceEEEEcCCCCce
Confidence 36889999999999999866433222222 222 24655543211 11 125789999999999
Q ss_pred eecCCCCceeecCCcceEECCeEEEEecCCC-CCCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEe
Q 015251 219 RSKGKLAYQFVRRPSEALVKGRLHWVTRPRR-YSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVY 296 (410)
Q Consensus 219 r~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~-~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~ 296 (410)
+..+.+|... ....++.++|.+|-+..... ......+..||+.+++|..++ +|... .....+..+|+|++++.
T Consensus 371 ~~~~~lp~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~~~~~~iyv~GG 445 (534)
T PHA03098 371 REEPPLIFPR-YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----YGGCAIYHDGKIYVIGG 445 (534)
T ss_pred eeCCCcCcCC-ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----cCceEEEECCEEEEECC
Confidence 9988776543 23445778999999987421 122467999999999999874 44221 13356778999988875
Q ss_pred CCCC-----eEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec-----
Q 015251 297 GNYG-----KLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK----- 366 (410)
Q Consensus 297 ~~~~-----~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~----- 366 (410)
.... .-.+|..+. .+..|+..-.+.. |+. ... ++. -++.|++..+
T Consensus 446 ~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~~--~r~-------------------~~~-~~~-~~~~iyv~GG~~~~~ 500 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNP--VTNKWTELSSLNF--PRI-------------------NAS-LCI-FNNKIYVVGGDKYEY 500 (534)
T ss_pred ccCCCCCcccceEEEecC--CCCceeeCCCCCc--ccc-------------------cce-EEE-ECCEEEEEcCCcCCc
Confidence 4211 123666553 2468987532211 110 011 111 2566665432
Q ss_pred -CCEEEEEeCCCCcEEEEE
Q 015251 367 -SRVLVSYDPKRRTFNEFV 384 (410)
Q Consensus 367 -~~~l~~yd~~~~~~~~v~ 384 (410)
...+..||+++++|+.+.
T Consensus 501 ~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 501 YINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred ccceeEEEeCCCCEEEecC
Confidence 246899999999998775
No 9
>PHA02713 hypothetical protein; Provisional
Probab=98.79 E-value=5.9e-07 Score=91.09 Aligned_cols=134 Identities=14% Similarity=0.097 Sum_probs=90.0
Q ss_pred eEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCcee
Q 015251 140 AICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWR 219 (410)
Q Consensus 140 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr 219 (410)
.+..+||.|++|..+++.+..+..... ...+ -+|..++.... ... ....++.|++.++.|.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~--a~l~-----~~IYviGG~~~---~~~---------~~~~v~~Yd~~~n~W~ 333 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYAS--AIVD-----NEIIIAGGYNF---NNP---------SLNKVYKINIENKIHV 333 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEE--EEEC-----CEEEEEcCCCC---CCC---------ccceEEEEECCCCeEe
Confidence 567899999999999887654321111 1122 25666543210 000 1257899999999999
Q ss_pred ecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEE-cCCCCCCCCCcceEEEEeCCeEEEEEeC
Q 015251 220 SKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREV-PKPDCGGLNRCNYHLTVLSGCLSVAVYG 297 (410)
Q Consensus 220 ~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i-~lP~~~~~~~~~~~l~~~~G~L~~~~~~ 297 (410)
.++.++.... ....+.++|.+|-+...........+.+||+.+++|..+ ++|... .....++++|+|++++..
T Consensus 334 ~~~~m~~~R~-~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r----~~~~~~~~~g~IYviGG~ 407 (557)
T PHA02713 334 ELPPMIKNRC-RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL----SSYGMCVLDQYIYIIGGR 407 (557)
T ss_pred eCCCCcchhh-ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc----ccccEEEECCEEEEEeCC
Confidence 9887765433 345678999999998763222345799999999999987 444322 234577899999999764
No 10
>PLN02153 epithiospecifier protein
Probab=98.76 E-value=3.9e-06 Score=80.19 Aligned_cols=207 Identities=15% Similarity=0.100 Sum_probs=118.4
Q ss_pred ceEEEEcccccceeeCCCCCCCCCC--ceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCC
Q 015251 139 DAICIYNPFTRDYIELPKSMQYPDQ--EVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSP 216 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~LP~~~~~~~~--~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~ 216 (410)
+.++++||.+.+|..+|+....+.. .......++ =+++.++.... ... ...+++|+..++
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-----~~iyv~GG~~~---~~~----------~~~v~~yd~~t~ 111 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-----TKLYIFGGRDE---KRE----------FSDFYSYDTVKN 111 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-----CEEEEECCCCC---CCc----------cCcEEEEECCCC
Confidence 4789999999999998864322211 111111222 25666643211 110 257899999999
Q ss_pred ceeecCCC-----CceeecCCcceEECCeEEEEecCCCCC------CCceEEEEEcCCceeeEEcCCCCCCCCCcceEEE
Q 015251 217 AWRSKGKL-----AYQFVRRPSEALVKGRLHWVTRPRRYS------PVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLT 285 (410)
Q Consensus 217 ~Wr~~~~~-----p~~~~~~~~~v~~~G~lyw~~~~~~~~------~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~ 285 (410)
+|..++.+ |... ....++..+|.+|.+....... ....+.+||+.+.+|..++.+...........++
T Consensus 112 ~W~~~~~~~~~~~p~~R-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~ 190 (341)
T PLN02153 112 EWTFLTKLDEEGGPEAR-TFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA 190 (341)
T ss_pred EEEEeccCCCCCCCCCc-eeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE
Confidence 99987654 3222 2345678899999987652110 1246899999999999875432111112233567
Q ss_pred EeCCeEEEEEeCC----------CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEE
Q 015251 286 VLSGCLSVAVYGN----------YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCI 355 (410)
Q Consensus 286 ~~~G~L~~~~~~~----------~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (410)
.++|+|+++.... ...-+||+++-. ...|++.....- +|... ..... .
T Consensus 191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~-~P~~r-----------------~~~~~--~ 248 (341)
T PLN02153 191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETTGA-KPSAR-----------------SVFAH--A 248 (341)
T ss_pred EECCeEEEEeccccccccCCccceecCceEEEEcC--CCcEEeccccCC-CCCCc-----------------ceeee--E
Confidence 8899998875421 011246666532 467998654321 12100 01111 1
Q ss_pred ccCCcEEEEecC---------------CEEEEEeCCCCcEEEEEEe
Q 015251 356 LEKGEILLEYKS---------------RVLVSYDPKRRTFNEFVFK 386 (410)
Q Consensus 356 ~~~g~il~~~~~---------------~~l~~yd~~~~~~~~v~~~ 386 (410)
.-++.|++.-+. ..++.||+++++|+.+...
T Consensus 249 ~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~ 294 (341)
T PLN02153 249 VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGEC 294 (341)
T ss_pred EECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCC
Confidence 113445443221 2589999999999988643
No 11
>PHA02790 Kelch-like protein; Provisional
Probab=98.74 E-value=2e-06 Score=85.93 Aligned_cols=184 Identities=13% Similarity=0.112 Sum_probs=115.7
Q ss_pred ceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCce
Q 015251 139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAW 218 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~W 218 (410)
.....+||.+++|..+|+++..+.... +...+ -++..++.... ...++.|+..+++|
T Consensus 287 ~~v~~Ydp~~~~W~~~~~m~~~r~~~~--~v~~~-----~~iYviGG~~~----------------~~sve~ydp~~n~W 343 (480)
T PHA02790 287 NNAIAVNYISNNWIPIPPMNSPRLYAS--GVPAN-----NKLYVVGGLPN----------------PTSVERWFHGDAAW 343 (480)
T ss_pred CeEEEEECCCCEEEECCCCCchhhcce--EEEEC-----CEEEEECCcCC----------------CCceEEEECCCCeE
Confidence 357788999999999998765432211 11222 35666543211 14578999999999
Q ss_pred eecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEEEEeCC
Q 015251 219 RSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGN 298 (410)
Q Consensus 219 r~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~~~~~~ 298 (410)
..++.+|.... ...++.++|.+|.+..... ....+.+||+.+++|..++.++... .....++++|+|++++..
T Consensus 344 ~~~~~l~~~r~-~~~~~~~~g~IYviGG~~~--~~~~ve~ydp~~~~W~~~~~m~~~r---~~~~~~~~~~~IYv~GG~- 416 (480)
T PHA02790 344 VNMPSLLKPRC-NPAVASINNVIYVIGGHSE--TDTTTEYLLPNHDQWQFGPSTYYPH---YKSCALVFGRRLFLVGRN- 416 (480)
T ss_pred EECCCCCCCCc-ccEEEEECCEEEEecCcCC--CCccEEEEeCCCCEEEeCCCCCCcc---ccceEEEECCEEEEECCc-
Confidence 99987775443 3456789999999987521 2356889999999999885433221 234567899999998642
Q ss_pred CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec------CCEEEE
Q 015251 299 YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK------SRVLVS 372 (410)
Q Consensus 299 ~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------~~~l~~ 372 (410)
.++.- .. ...|+..-.+.. |+. ... +..-+|.|++.-+ ...+-.
T Consensus 417 ---~e~yd---p~-~~~W~~~~~m~~--~r~-------------------~~~--~~v~~~~IYviGG~~~~~~~~~ve~ 466 (480)
T PHA02790 417 ---AEFYC---ES-SNTWTLIDDPIY--PRD-------------------NPE--LIIVDNKLLLIGGFYRGSYIDTIEV 466 (480)
T ss_pred ---eEEec---CC-CCcEeEcCCCCC--Ccc-------------------ccE--EEEECCEEEEECCcCCCcccceEEE
Confidence 23321 22 468997543221 110 111 1122466655432 135789
Q ss_pred EeCCCCcEEE
Q 015251 373 YDPKRRTFNE 382 (410)
Q Consensus 373 yd~~~~~~~~ 382 (410)
||+++++|+.
T Consensus 467 Yd~~~~~W~~ 476 (480)
T PHA02790 467 YNNRTYSWNI 476 (480)
T ss_pred EECCCCeEEe
Confidence 9999999974
No 12
>PLN02193 nitrile-specifier protein
Probab=98.69 E-value=5.1e-06 Score=82.77 Aligned_cols=206 Identities=12% Similarity=0.083 Sum_probs=121.4
Q ss_pred ceEEEEcccccceeeCCCCCCCCC--CceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCC
Q 015251 139 DAICIYNPFTRDYIELPKSMQYPD--QEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSP 216 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~LP~~~~~~~--~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~ 216 (410)
..++++||.+.+|..+|+....+. .....+..++ =++..+..... .. ....+++|++.++
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~-----~~lYvfGG~~~----~~---------~~ndv~~yD~~t~ 254 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG-----STLYVFGGRDA----SR---------QYNGFYSFDTTTN 254 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC-----CEEEEECCCCC----CC---------CCccEEEEECCCC
Confidence 358999999999998875322221 0111111222 24555532111 10 1257899999999
Q ss_pred ceeecCCC---CceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEE
Q 015251 217 AWRSKGKL---AYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSV 293 (410)
Q Consensus 217 ~Wr~~~~~---p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~ 293 (410)
+|+.+..+ |... .....+..++.||.+...........+.+||+.+.+|..++.|...........++.++|++++
T Consensus 255 ~W~~l~~~~~~P~~R-~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyv 333 (470)
T PLN02193 255 EWKLLTPVEEGPTPR-SFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWV 333 (470)
T ss_pred EEEEcCcCCCCCCCc-cceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEE
Confidence 99998654 2222 2344567899999998653223345789999999999988654321112223457788999988
Q ss_pred EEeCC-CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEecC-----
Q 015251 294 AVYGN-YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKS----- 367 (410)
Q Consensus 294 ~~~~~-~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~----- 367 (410)
+...+ ...-++|+++-. +..|.+...+.. .|.. + .... +..-++.|++.-+.
T Consensus 334 iGG~~g~~~~dv~~yD~~--t~~W~~~~~~g~-~P~~-R----------------~~~~--~~~~~~~iyv~GG~~~~~~ 391 (470)
T PLN02193 334 VYGFNGCEVDDVHYYDPV--QDKWTQVETFGV-RPSE-R----------------SVFA--SAAVGKHIVIFGGEIAMDP 391 (470)
T ss_pred EECCCCCccCceEEEECC--CCEEEEeccCCC-CCCC-c----------------ceeE--EEEECCEEEEECCccCCcc
Confidence 87532 223567887642 467988654321 1110 0 0111 11223555554221
Q ss_pred ----------CEEEEEeCCCCcEEEEEE
Q 015251 368 ----------RVLVSYDPKRRTFNEFVF 385 (410)
Q Consensus 368 ----------~~l~~yd~~~~~~~~v~~ 385 (410)
..+..||+.+++|+.+..
T Consensus 392 ~~~~~~~~~~ndv~~~D~~t~~W~~~~~ 419 (470)
T PLN02193 392 LAHVGPGQLTDGTFALDTETLQWERLDK 419 (470)
T ss_pred ccccCccceeccEEEEEcCcCEEEEccc
Confidence 138999999999998874
No 13
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.69 E-value=3.2e-09 Score=70.10 Aligned_cols=44 Identities=32% Similarity=0.551 Sum_probs=37.4
Q ss_pred CCCCcHHHHHHHHccCCcccccceecccHhhHhhhCChhhhhhh
Q 015251 25 METLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANLH 68 (410)
Q Consensus 25 ~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~~ 68 (410)
+..||+|++.+||.+|+++++++++.|||+|++++.++.+-..+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 56799999999999999999999999999999999998876654
No 14
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.66 E-value=8.8e-09 Score=65.46 Aligned_cols=39 Identities=36% Similarity=0.578 Sum_probs=36.6
Q ss_pred CcHHHHHHHHccCCcccccceecccHhhHhhhCChhhhh
Q 015251 28 LPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLAN 66 (410)
Q Consensus 28 LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~ 66 (410)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~ 39 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF 39 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 799999999999999999999999999999999987744
No 15
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.63 E-value=3.2e-06 Score=85.69 Aligned_cols=199 Identities=17% Similarity=0.212 Sum_probs=125.9
Q ss_pred ceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCce
Q 015251 139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAW 218 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~W 218 (410)
..+...||.+++|..+.+.+..+. ..+.+.-. -+|..++.... +. .....++.|++++++|
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~---~~~~~~~~----~~lYv~GG~~~----~~--------~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC---RVGVAVLN----GKLYVVGGYDS----GS--------DRLSSVERYDPRTNQW 361 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc---cccEEEEC----CEEEEEccccC----CC--------cccceEEEecCCCCce
Confidence 467789999999999988664332 12222221 25666544321 11 0137899999999999
Q ss_pred eecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeC
Q 015251 219 RSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYG 297 (410)
Q Consensus 219 r~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~ 297 (410)
..++.+...... ...+.++|.+|-+...........+-.||..+++|..+. ++. .......++++|+|++++..
T Consensus 362 ~~~a~M~~~R~~-~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~----~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 362 TPVAPMNTKRSD-FGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT----RRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred eccCCccCcccc-ceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc----ceeeeEEEEECCEEEEEcCc
Confidence 998766554432 345689999999998854445568999999999999884 543 12345688999999999864
Q ss_pred CCCeEEEEEEeeCC-CCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEec------CCEE
Q 015251 298 NYGKLEIWVMKDYN-VKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYK------SRVL 370 (410)
Q Consensus 298 ~~~~l~IW~l~~~~-~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~------~~~l 370 (410)
....-.+=..+-|. ....|+..-.+.- ++. ... +++. +|.|+...+ ...+
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~-------------------~~g-~a~~-~~~iYvvGG~~~~~~~~~V 493 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNT--RRS-------------------GFG-VAVL-NGKIYVVGGFDGTSALSSV 493 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCccc--ccc-------------------cce-EEEE-CCEEEEECCccCCCccceE
Confidence 32211111222232 2468988664433 110 111 2222 455555433 1247
Q ss_pred EEEeCCCCcEEEEE
Q 015251 371 VSYDPKRRTFNEFV 384 (410)
Q Consensus 371 ~~yd~~~~~~~~v~ 384 (410)
-.||+++++|+.+.
T Consensus 494 E~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 494 ERYDPETNQWTMVA 507 (571)
T ss_pred EEEcCCCCceeEcc
Confidence 88999999999986
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.55 E-value=2.9e-05 Score=74.31 Aligned_cols=180 Identities=13% Similarity=0.059 Sum_probs=103.3
Q ss_pred ccCceEEEeeccCCceEEEEcc--cccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccc
Q 015251 125 SCNGLLCLSDSLFNDAICIYNP--FTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVI 202 (410)
Q Consensus 125 s~~Gll~l~~~~~~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~ 202 (410)
..++-|.+..+.....++++++ .+++|..+|+.+..++... .....+ -+|..++.......++..
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~-~~~~~~-----~~iYv~GG~~~~~~~~~~------- 81 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQA-VAAAID-----GKLYVFGGIGKANSEGSP------- 81 (346)
T ss_pred EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccc-eEEEEC-----CEEEEEeCCCCCCCCCcc-------
Confidence 4456665544333456778774 7889999998663222111 111222 256666543210000000
Q ss_pred cCCceEEEEEeCCCceeecCC-CCceeecCCcce-EECCeEEEEecCCCCC-----------------------------
Q 015251 203 YPRSDVQVYTVGSPAWRSKGK-LAYQFVRRPSEA-LVKGRLHWVTRPRRYS----------------------------- 251 (410)
Q Consensus 203 ~~~~~~~Vyss~t~~Wr~~~~-~p~~~~~~~~~v-~~~G~lyw~~~~~~~~----------------------------- 251 (410)
.....++.|+..+++|+.+.. +|... ....++ .++|.||.+.......
T Consensus 82 ~~~~~v~~Yd~~~~~W~~~~~~~p~~~-~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T TIGR03547 82 QVFDDVYRYDPKKNSWQKLDTRSPVGL-LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQP 160 (346)
T ss_pred eecccEEEEECCCCEEecCCCCCCCcc-cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCC
Confidence 012578999999999999863 23322 112223 5799999987642100
Q ss_pred -----CCceEEEEEcCCceeeEE-cCCCCCCCCCcceEEEEeCCeEEEEEeCC---CCeEEEEEEeeCCCCCceeeEEE
Q 015251 252 -----PVRGIVSFDIADEQFREV-PKPDCGGLNRCNYHLTVLSGCLSVAVYGN---YGKLEIWVMKDYNVKESWAKELN 321 (410)
Q Consensus 252 -----~~~~Il~fDl~~e~~~~i-~lP~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~l~IW~l~~~~~~~~W~~~~~ 321 (410)
....+.+||+.+++|..+ ++|... .....++.++|+|+++.... ....++|..+-...+..|...-.
T Consensus 161 ~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 161 PEDYFWNKNVLSYDPSTNQWRNLGENPFLG---TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred hhHcCccceEEEEECCCCceeECccCCCCc---CCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 025799999999999988 444211 12345778899999987532 23356776652122457987654
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.55 E-value=4.2e-05 Score=72.51 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=94.6
Q ss_pred eEEEE-ccccc-ceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCc
Q 015251 140 AICIY-NPFTR-DYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPA 217 (410)
Q Consensus 140 ~~~V~-NP~T~-~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~ 217 (410)
.++++ +|..+ +|..+++.+..+.. . .+..++ =+++.++.... .. ....++.|+..+++
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~-~-~~~~~~-----~~lyviGG~~~----~~---------~~~~v~~~d~~~~~ 99 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAY-G-ASVSVE-----NGIYYIGGSNS----SE---------RFSSVYRITLDESK 99 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccc-e-EEEEEC-----CEEEEEcCCCC----CC---------CceeEEEEEEcCCc
Confidence 46666 45533 78888875543321 1 122222 24555543211 11 02578899999998
Q ss_pred e----eecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEE
Q 015251 218 W----RSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLS 292 (410)
Q Consensus 218 W----r~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~ 292 (410)
| +.++.+|.... ...++.++|.+|.+...........+.+||+.+++|..++ +|... .....++.++|+|+
T Consensus 100 w~~~~~~~~~lp~~~~-~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~---r~~~~~~~~~~~iY 175 (323)
T TIGR03548 100 EELICETIGNLPFTFE-NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP---RVQPVCVKLQNELY 175 (323)
T ss_pred eeeeeeEcCCCCcCcc-CceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC---CCcceEEEECCEEE
Confidence 8 56666665433 3456788999999987532233468999999999999884 55321 12335678899999
Q ss_pred EEEeCC-CCeEEEEEEeeCCCCCceeeEE
Q 015251 293 VAVYGN-YGKLEIWVMKDYNVKESWAKEL 320 (410)
Q Consensus 293 ~~~~~~-~~~l~IW~l~~~~~~~~W~~~~ 320 (410)
++.... ....++|..+-. +..|....
T Consensus 176 v~GG~~~~~~~~~~~yd~~--~~~W~~~~ 202 (323)
T TIGR03548 176 VFGGGSNIAYTDGYKYSPK--KNQWQKVA 202 (323)
T ss_pred EEcCCCCccccceEEEecC--CCeeEECC
Confidence 987643 223466766532 46798754
No 18
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.42 E-value=0.00011 Score=71.26 Aligned_cols=183 Identities=11% Similarity=0.040 Sum_probs=104.5
Q ss_pred EeccCceEEEeeccCCceEEEEccc--ccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccc
Q 015251 123 VGSCNGLLCLSDSLFNDAICIYNPF--TRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRR 200 (410)
Q Consensus 123 ~~s~~Gll~l~~~~~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~ 200 (410)
.+..++-|.+..+.....++++++. +++|..+|+.+..+.... .....+ =++..++.......++...
T Consensus 34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~-~~v~~~-----~~IYV~GG~~~~~~~~~~~---- 103 (376)
T PRK14131 34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQA-VAAFID-----GKLYVFGGIGKTNSEGSPQ---- 103 (376)
T ss_pred EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccc-eEEEEC-----CEEEEEcCCCCCCCCCcee----
Confidence 3445666655433234567788775 578999987553222111 111222 2455554321100000000
Q ss_pred cccCCceEEEEEeCCCceeecCCC-CceeecCCcceE-ECCeEEEEecCCCC----------------------------
Q 015251 201 VIYPRSDVQVYTVGSPAWRSKGKL-AYQFVRRPSEAL-VKGRLHWVTRPRRY---------------------------- 250 (410)
Q Consensus 201 ~~~~~~~~~Vyss~t~~Wr~~~~~-p~~~~~~~~~v~-~~G~lyw~~~~~~~---------------------------- 250 (410)
....+++|+..+++|+.+... |.... ...++. .+|.||.+......
T Consensus 104 ---~~~~v~~YD~~~n~W~~~~~~~p~~~~-~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~ 179 (376)
T PRK14131 104 ---VFDDVYKYDPKTNSWQKLDTRSPVGLA-GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD 179 (376)
T ss_pred ---EcccEEEEeCCCCEEEeCCCCCCCccc-ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence 025799999999999998742 33221 222334 79999999765210
Q ss_pred ------CCCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeCC---CCeEEEEEEeeCCCCCceeeEE
Q 015251 251 ------SPVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYGN---YGKLEIWVMKDYNVKESWAKEL 320 (410)
Q Consensus 251 ------~~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~~---~~~l~IW~l~~~~~~~~W~~~~ 320 (410)
.....+.+||+.+++|..+. +|... .....++..+++|+++.... ....++|..+-...+..|.+..
T Consensus 180 ~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~---~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~ 256 (376)
T PRK14131 180 KKPEDYFFNKEVLSYDPSTNQWKNAGESPFLG---TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP 256 (376)
T ss_pred CChhhcCcCceEEEEECCCCeeeECCcCCCCC---CCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC
Confidence 01257999999999999874 44211 12345777899999987531 2456777765222256898766
Q ss_pred Ee
Q 015251 321 NI 322 (410)
Q Consensus 321 ~i 322 (410)
.+
T Consensus 257 ~~ 258 (376)
T PRK14131 257 DL 258 (376)
T ss_pred CC
Confidence 43
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.41 E-value=0.00032 Score=67.97 Aligned_cols=92 Identities=13% Similarity=0.160 Sum_probs=59.4
Q ss_pred ceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCC-CCCCc--eEEEEEcCCceeeEE-cCCCCCC-C-C-
Q 015251 206 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRR-YSPVR--GIVSFDIADEQFREV-PKPDCGG-L-N- 278 (410)
Q Consensus 206 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~-~~~~~--~Il~fDl~~e~~~~i-~lP~~~~-~-~- 278 (410)
..+++|+..+++|..++.+|.........+.+++.||.+..... ..... ....||.++.+|..+ ++|.... . .
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 47899999999999988776533333455778999999986421 11122 345667788999877 4553221 0 0
Q ss_pred -CcceEEEEeCCeEEEEEeC
Q 015251 279 -RCNYHLTVLSGCLSVAVYG 297 (410)
Q Consensus 279 -~~~~~l~~~~G~L~~~~~~ 297 (410)
......+.++|+|+++...
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~ 288 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGA 288 (376)
T ss_pred ccceEeceeECCEEEEeecc
Confidence 0112246789999988753
No 20
>PHA02790 Kelch-like protein; Provisional
Probab=98.37 E-value=2.4e-05 Score=78.16 Aligned_cols=141 Identities=11% Similarity=0.061 Sum_probs=94.9
Q ss_pred EeccCceEEEeecc-CCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccccccc
Q 015251 123 VGSCNGLLCLSDSL-FNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRV 201 (410)
Q Consensus 123 ~~s~~Gll~l~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 201 (410)
.+..+|-|.+..+. .......+||.+.+|..+|+.+..+.. ..+..++ -++..++.... .
T Consensus 314 ~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~--~~~~~~~-----g~IYviGG~~~----~-------- 374 (480)
T PHA02790 314 GVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCN--PAVASIN-----NVIYVIGGHSE----T-------- 374 (480)
T ss_pred EEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcc--cEEEEEC-----CEEEEecCcCC----C--------
Confidence 45577877554432 224577889999999999997754422 1222333 35666643211 0
Q ss_pred ccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcc
Q 015251 202 IYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCN 281 (410)
Q Consensus 202 ~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~ 281 (410)
...+++|++++++|..++.++.... ...++.++|.+|.+.. ...+||+.+++|..++..+.. ...
T Consensus 375 ---~~~ve~ydp~~~~W~~~~~m~~~r~-~~~~~~~~~~IYv~GG--------~~e~ydp~~~~W~~~~~m~~~---r~~ 439 (480)
T PHA02790 375 ---DTTTEYLLPNHDQWQFGPSTYYPHY-KSCALVFGRRLFLVGR--------NAEFYCESSNTWTLIDDPIYP---RDN 439 (480)
T ss_pred ---CccEEEEeCCCCEEEeCCCCCCccc-cceEEEECCEEEEECC--------ceEEecCCCCcEeEcCCCCCC---ccc
Confidence 1468999999999999887665443 2456789999998873 367899999999988432211 224
Q ss_pred eEEEEeCCeEEEEEeC
Q 015251 282 YHLTVLSGCLSVAVYG 297 (410)
Q Consensus 282 ~~l~~~~G~L~~~~~~ 297 (410)
..+++++|+|++++..
T Consensus 440 ~~~~v~~~~IYviGG~ 455 (480)
T PHA02790 440 PELIIVDNKLLLIGGF 455 (480)
T ss_pred cEEEEECCEEEEECCc
Confidence 4688999999999864
No 21
>PLN02193 nitrile-specifier protein
Probab=98.33 E-value=0.00012 Score=73.00 Aligned_cols=159 Identities=11% Similarity=0.063 Sum_probs=93.1
Q ss_pred ceEEEEEeCCCceeecCC---CCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcce
Q 015251 206 SDVQVYTVGSPAWRSKGK---LAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNY 282 (410)
Q Consensus 206 ~~~~Vyss~t~~Wr~~~~---~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~ 282 (410)
..+++|+..+++|..++. .|.........+.+++.||.+...........+.+||+.+.+|..++............
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 272 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH 272 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce
Confidence 468999999999997653 23211123345788999999886532223467999999999999874311000111234
Q ss_pred EEEEeCCeEEEEEeCCC--CeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCc
Q 015251 283 HLTVLSGCLSVAVYGNY--GKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE 360 (410)
Q Consensus 283 ~l~~~~G~L~~~~~~~~--~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 360 (410)
.++..+++|+++..... ..-++|..+-. ...|........ +|.. +. .. .+.+ -+++
T Consensus 273 ~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~-~~~~---------------R~--~~-~~~~-~~gk 330 (470)
T PLN02193 273 SMAADEENVYVFGGVSATARLKTLDSYNIV--DKKWFHCSTPGD-SFSI---------------RG--GA-GLEV-VQGK 330 (470)
T ss_pred EEEEECCEEEEECCCCCCCCcceEEEEECC--CCEEEeCCCCCC-CCCC---------------CC--Cc-EEEE-ECCc
Confidence 56778999988875421 22356665532 467986432110 1100 00 01 1111 2455
Q ss_pred EEEEec-----CCEEEEEeCCCCcEEEEEEe
Q 015251 361 ILLEYK-----SRVLVSYDPKRRTFNEFVFK 386 (410)
Q Consensus 361 il~~~~-----~~~l~~yd~~~~~~~~v~~~ 386 (410)
+++..+ ...+..||+++++|+.+...
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~ 361 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETF 361 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccC
Confidence 554432 14589999999999988643
No 22
>PLN02153 epithiospecifier protein
Probab=98.28 E-value=0.00019 Score=68.52 Aligned_cols=112 Identities=13% Similarity=0.056 Sum_probs=70.9
Q ss_pred ceEEEEEeCCCceeecCCCC---ceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCC-CCC-CCCCc
Q 015251 206 SDVQVYTVGSPAWRSKGKLA---YQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKP-DCG-GLNRC 280 (410)
Q Consensus 206 ~~~~Vyss~t~~Wr~~~~~p---~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP-~~~-~~~~~ 280 (410)
..+++|+..+++|..+..++ .........+.+++.||.+...........+.+||+.+.+|..++-. ... .....
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART 129 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence 47999999999999876432 21111234578899999998753323335799999999999987421 100 00112
Q ss_pred ceEEEEeCCeEEEEEeCCCC--------eEEEEEEeeCCCCCceeeE
Q 015251 281 NYHLTVLSGCLSVAVYGNYG--------KLEIWVMKDYNVKESWAKE 319 (410)
Q Consensus 281 ~~~l~~~~G~L~~~~~~~~~--------~l~IW~l~~~~~~~~W~~~ 319 (410)
....+..+++|+++...... .-+||+.+-. +..|...
T Consensus 130 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~--~~~W~~l 174 (341)
T PLN02153 130 FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIA--DGKWVQL 174 (341)
T ss_pred eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECC--CCeEeeC
Confidence 34567889999888654211 1256666532 4679864
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.26 E-value=0.00083 Score=64.30 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=58.7
Q ss_pred ceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCC-CCCceEEEEE--cCCceeeEE-cCCCCCCC---C
Q 015251 206 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRY-SPVRGIVSFD--IADEQFREV-PKPDCGGL---N 278 (410)
Q Consensus 206 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~Il~fD--l~~e~~~~i-~lP~~~~~---~ 278 (410)
..+++|+..+++|..++.+|.........+.++|.||.+...... .....+..|| .++.+|..+ ++|..... .
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 479999999999999987765333334556789999999765211 1123344454 566799877 44432110 0
Q ss_pred CcceEEEEeCCeEEEEEeC
Q 015251 279 RCNYHLTVLSGCLSVAVYG 297 (410)
Q Consensus 279 ~~~~~l~~~~G~L~~~~~~ 297 (410)
......++++|+|+++...
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~ 266 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGA 266 (346)
T ss_pred ccEEeeeEECCEEEEeecC
Confidence 0122367789999998754
No 24
>PHA03098 kelch-like protein; Provisional
Probab=98.26 E-value=0.00017 Score=73.34 Aligned_cols=174 Identities=14% Similarity=0.165 Sum_probs=107.5
Q ss_pred EeccCceEEEeeccC----CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccc
Q 015251 123 VGSCNGLLCLSDSLF----NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRT 198 (410)
Q Consensus 123 ~~s~~Gll~l~~~~~----~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 198 (410)
+.+.+|-|.+..+.. .+.+.++||.|++|..+|+.+..+.... +..++ -++..++.... .+.
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~--~~~~~-----~~iYv~GG~~~---~~~---- 403 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPC--VVNVN-----NLIYVIGGISK---NDE---- 403 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccce--EEEEC-----CEEEEECCcCC---CCc----
Confidence 445567665544321 2468899999999999988665432212 12222 25555543211 010
Q ss_pred cccccCCceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCC---CCceEEEEEcCCceeeEEcCCCCC
Q 015251 199 RRVIYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYS---PVRGIVSFDIADEQFREVPKPDCG 275 (410)
Q Consensus 199 ~~~~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~Il~fDl~~e~~~~i~lP~~~ 275 (410)
....+++|+..+++|..+..+|.... ...++..+|.+|.+....... ....+.+||+.+++|..++..+..
T Consensus 404 -----~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 477 (534)
T PHA03098 404 -----LLKTVECFSLNTNKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP 477 (534)
T ss_pred -----ccceEEEEeCCCCeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc
Confidence 02578999999999999887665443 345678899999987642111 124599999999999988422211
Q ss_pred CCCCcceEEEEeCCeEEEEEeCCCC--eEEEEEEeeCCCCCceeeEEE
Q 015251 276 GLNRCNYHLTVLSGCLSVAVYGNYG--KLEIWVMKDYNVKESWAKELN 321 (410)
Q Consensus 276 ~~~~~~~~l~~~~G~L~~~~~~~~~--~l~IW~l~~~~~~~~W~~~~~ 321 (410)
.....++.++|+|+++...... .-.||..+-. ...|.....
T Consensus 478 ---r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~ 520 (534)
T PHA03098 478 ---RINASLCIFNNKIYVVGGDKYEYYINEIEVYDDK--TNTWTLFCK 520 (534)
T ss_pred ---cccceEEEECCEEEEEcCCcCCcccceeEEEeCC--CCEEEecCC
Confidence 1234567789999988764321 2356666542 467987653
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.22 E-value=0.00014 Score=68.93 Aligned_cols=152 Identities=13% Similarity=0.139 Sum_probs=91.7
Q ss_pred EeccCceEEEeecc----CCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccc
Q 015251 123 VGSCNGLLCLSDSL----FNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRT 198 (410)
Q Consensus 123 ~~s~~Gll~l~~~~----~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~ 198 (410)
.+..+|.|.+..+. ..+.++++||.|.+|..+|+.+..+.... ....++ =++..+..... ..
T Consensus 119 ~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~-~~~~~~-----~~iYv~GG~~~----~~---- 184 (323)
T TIGR03548 119 ACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQP-VCVKLQ-----NELYVFGGGSN----IA---- 184 (323)
T ss_pred EEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcc-eEEEEC-----CEEEEEcCCCC----cc----
Confidence 44567777554331 23579999999999999986543222111 112222 24555543211 00
Q ss_pred cccccCCceEEEEEeCCCceeecCCCCc-----eeecCCcceEECCeEEEEecCCCCC----------------------
Q 015251 199 RRVIYPRSDVQVYTVGSPAWRSKGKLAY-----QFVRRPSEALVKGRLHWVTRPRRYS---------------------- 251 (410)
Q Consensus 199 ~~~~~~~~~~~Vyss~t~~Wr~~~~~p~-----~~~~~~~~v~~~G~lyw~~~~~~~~---------------------- 251 (410)
...+++|+..+++|+.+..++. ........+..+|.+|.+.......
T Consensus 185 ------~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (323)
T TIGR03548 185 ------YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKE 258 (323)
T ss_pred ------ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHH
Confidence 1357899999999999875431 1112222344578999887652100
Q ss_pred ----------CCceEEEEEcCCceeeEEc-CCCCCCCCCcceEEEEeCCeEEEEEeC
Q 015251 252 ----------PVRGIVSFDIADEQFREVP-KPDCGGLNRCNYHLTVLSGCLSVAVYG 297 (410)
Q Consensus 252 ----------~~~~Il~fDl~~e~~~~i~-lP~~~~~~~~~~~l~~~~G~L~~~~~~ 297 (410)
..+.+.+||+.+++|+.++ +|... .....++.++|+|+++...
T Consensus 259 ~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~---r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 259 YFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFA---RCGAALLLTGNNIFSINGE 312 (323)
T ss_pred HhCCCccccCcCceEEEEECCCCeeeEcccccccc---cCchheEEECCEEEEEecc
Confidence 1257999999999999885 44211 1234578999999988753
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.67 E-value=0.0012 Score=58.41 Aligned_cols=113 Identities=12% Similarity=0.138 Sum_probs=75.8
Q ss_pred ceEEEEEeCCCceeecC--CCCceeecCCcceEECCeEEEEecCCCC---------CCCceEEEEEcCCceeeEEcCCCC
Q 015251 206 SDVQVYTVGSPAWRSKG--KLAYQFVRRPSEALVKGRLHWVTRPRRY---------SPVRGIVSFDIADEQFREVPKPDC 274 (410)
Q Consensus 206 ~~~~Vyss~t~~Wr~~~--~~p~~~~~~~~~v~~~G~lyw~~~~~~~---------~~~~~Il~fDl~~e~~~~i~lP~~ 274 (410)
..+++++..|-.||.+. ..|........++..+|.+|.+..+.+. .-.+.|++||++++.|..-+--..
T Consensus 157 ~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~ 236 (392)
T KOG4693|consen 157 QDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTM 236 (392)
T ss_pred ccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCc
Confidence 56888999999999885 3344444566777889999999876321 223689999999999975421111
Q ss_pred CCCCCcceEEEEeCCeEEEEEeCC----CCeEEEEEEeeCCCCCceeeEE
Q 015251 275 GGLNRCNYHLTVLSGCLSVAVYGN----YGKLEIWVMKDYNVKESWAKEL 320 (410)
Q Consensus 275 ~~~~~~~~~l~~~~G~L~~~~~~~----~~~l~IW~l~~~~~~~~W~~~~ 320 (410)
........+..+.+|++++....+ ..--++|..+. ...-|.+..
T Consensus 237 ~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP--~t~~W~~I~ 284 (392)
T KOG4693|consen 237 KPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP--KTSMWSVIS 284 (392)
T ss_pred CCCcccccceEEEcceEEEecccchhhhhhhcceeeccc--ccchheeee
Confidence 111223446788999999987653 23357788765 245687744
No 27
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.38 E-value=0.0051 Score=57.76 Aligned_cols=171 Identities=13% Similarity=0.130 Sum_probs=89.6
Q ss_pred ceEEEEcccccceeeC--CCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCC
Q 015251 139 DAICIYNPFTRDYIEL--PKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSP 216 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~L--P~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~ 216 (410)
+.+|++|--+.+|.++ |.+|..+....+ +..|+. .+..++.....-+...+. +-..+.+|++.++
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~---va~~s~---~l~~fGGEfaSPnq~qF~-------HYkD~W~fd~~tr 164 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQA---VAVPSN---ILWLFGGEFASPNQEQFH-------HYKDLWLFDLKTR 164 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCcccee---EEeccC---eEEEeccccCCcchhhhh-------hhhheeeeeeccc
Confidence 4799999999999887 333332222222 223332 222222111110011111 1256889999999
Q ss_pred ceeecC--CCCceeecCCcceEECCeEEEEecCCCC----CCCceEEEEEcCCceeeEEcCCCCCCCC-CcceEEEEe-C
Q 015251 217 AWRSKG--KLAYQFVRRPSEALVKGRLHWVTRPRRY----SPVRGIVSFDIADEQFREVPKPDCGGLN-RCNYHLTVL-S 288 (410)
Q Consensus 217 ~Wr~~~--~~p~~~~~~~~~v~~~G~lyw~~~~~~~----~~~~~Il~fDl~~e~~~~i~lP~~~~~~-~~~~~l~~~-~ 288 (410)
+|..+. ..|.... ...-|.....|.-+..-.+. .--+.+.+||+++=+|..+..+-. ... .....+.+. .
T Consensus 165 kweql~~~g~PS~RS-GHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-~PtpRSGcq~~vtpq 242 (521)
T KOG1230|consen 165 KWEQLEFGGGPSPRS-GHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-GPTPRSGCQFSVTPQ 242 (521)
T ss_pred hheeeccCCCCCCCc-cceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-CCCCCCcceEEecCC
Confidence 999886 3343221 12223333333222211110 112579999999999999965421 111 122344554 7
Q ss_pred CeEEEEEeCC-----------CCeEEEEEEeeC---CCCCceeeEEEecc
Q 015251 289 GCLSVAVYGN-----------YGKLEIWVMKDY---NVKESWAKELNIGA 324 (410)
Q Consensus 289 G~L~~~~~~~-----------~~~l~IW~l~~~---~~~~~W~~~~~i~~ 324 (410)
|.+.+..... ...-++|.|+.. +++-.|.++..+.+
T Consensus 243 g~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~ 292 (521)
T KOG1230|consen 243 GGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGV 292 (521)
T ss_pred CcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCC
Confidence 7777765421 235799999843 22456777776666
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.33 E-value=0.0011 Score=60.50 Aligned_cols=45 Identities=29% Similarity=0.485 Sum_probs=39.9
Q ss_pred CCCCCCc----HHHHHHHHccCCcccccceecccHhhHhhhCChhhhhh
Q 015251 23 TGMETLP----REIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANL 67 (410)
Q Consensus 23 ~~~~~LP----~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~ 67 (410)
..+..|| +++.+.||+.|...+|..|..|||+|+++++++..-+.
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 4567899 99999999999999999999999999999999865443
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=9.2e-05 Score=66.66 Aligned_cols=39 Identities=33% Similarity=0.505 Sum_probs=36.2
Q ss_pred CCCCCcHHHHHHHHccCCcccccceecccHhhHhhhCCh
Q 015251 24 GMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDP 62 (410)
Q Consensus 24 ~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~ 62 (410)
.|..||||++..||+.|+-|+|++...|||+|+++.++.
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de 135 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE 135 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence 378999999999999999999999999999999998664
No 30
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.82 E-value=0.17 Score=50.71 Aligned_cols=163 Identities=12% Similarity=0.090 Sum_probs=95.6
Q ss_pred ceEEEEcccccceeeCCCCCC---CCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCC
Q 015251 139 DAICIYNPFTRDYIELPKSMQ---YPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGS 215 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~LP~~~~---~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t 215 (410)
..+..+|+.|++|..+.+... .+....++ +++ =||+.++.... .+.. ...++||+..+
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~--~~g-----~~l~vfGG~~~---~~~~---------~ndl~i~d~~~ 199 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSAT--VVG-----TKLVVFGGIGG---TGDS---------LNDLHIYDLET 199 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEE--EEC-----CEEEEECCccC---cccc---------eeeeeeecccc
Confidence 379999999999999865322 11112222 222 24555533211 1101 36899999999
Q ss_pred CceeecCCCC--ceeecCCcceEECCeEEEEecCC-CCCCCceEEEEEcCCceeeEEcCCCCC-CCCCcceEEEEeCCeE
Q 015251 216 PAWRSKGKLA--YQFVRRPSEALVKGRLHWVTRPR-RYSPVRGIVSFDIADEQFREVPKPDCG-GLNRCNYHLTVLSGCL 291 (410)
Q Consensus 216 ~~Wr~~~~~p--~~~~~~~~~v~~~G~lyw~~~~~-~~~~~~~Il~fDl~~e~~~~i~lP~~~-~~~~~~~~l~~~~G~L 291 (410)
.+|..+.... .........+.+++.++-+.... .....+.+..||+.+.+|..++ +... ........++..+..+
T Consensus 200 ~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-~~g~~p~~R~~h~~~~~~~~~ 278 (482)
T KOG0379|consen 200 STWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-TGGDLPSPRSGHSLTVSGDHL 278 (482)
T ss_pred ccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeecccceeeecc-ccCCCCCCcceeeeEEECCEE
Confidence 9999886321 11223444556666666665543 2234467999999998888332 1111 0111234566666677
Q ss_pred EEEEeCCC----CeEEEEEEeeCCCCCceeeEEEec
Q 015251 292 SVAVYGNY----GKLEIWVMKDYNVKESWAKELNIG 323 (410)
Q Consensus 292 ~~~~~~~~----~~l~IW~l~~~~~~~~W~~~~~i~ 323 (410)
.++..... .--++|.|+.. +..|.......
T Consensus 279 ~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~~~~~~ 312 (482)
T KOG0379|consen 279 LLFGGGTDPKQEPLGDLYGLDLE--TLVWSKVESVG 312 (482)
T ss_pred EEEcCCccccccccccccccccc--ccceeeeeccc
Confidence 77765533 35678888753 57899877666
No 31
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=96.50 E-value=0.023 Score=50.44 Aligned_cols=157 Identities=12% Similarity=0.121 Sum_probs=93.5
Q ss_pred ceEEEEEeCCCceeecC--C-CCceeecCCcceEECCeEEEEecCC--CCCCCceEEEEEcCCceeeEEc---CCCCCCC
Q 015251 206 SDVQVYTVGSPAWRSKG--K-LAYQFVRRPSEALVKGRLHWVTRPR--RYSPVRGIVSFDIADEQFREVP---KPDCGGL 277 (410)
Q Consensus 206 ~~~~Vyss~t~~Wr~~~--~-~p~~~~~~~~~v~~~G~lyw~~~~~--~~~~~~~Il~fDl~~e~~~~i~---lP~~~~~ 277 (410)
..++-|+.++++|+... . +|-.. ...++.+++..+|.+.... ....+..+-+||+++.+|+.+. -|+.-.
T Consensus 105 N~Ly~fDp~t~~W~~p~v~G~vPgaR-DGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR- 182 (392)
T KOG4693|consen 105 NLLYEFDPETNVWKKPEVEGFVPGAR-DGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR- 182 (392)
T ss_pred ceeeeeccccccccccceeeecCCcc-CCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh-
Confidence 56788999999999764 2 23222 3455677888999887542 2234567999999999999983 343211
Q ss_pred CCcceEEEEeCCeEEEEEeCC-----------CCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCC
Q 015251 278 NRCNYHLTVLSGCLSVAVYGN-----------YGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLN 346 (410)
Q Consensus 278 ~~~~~~l~~~~G~L~~~~~~~-----------~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~ 346 (410)
......+++|..++..... .-.-.|-.|+- ..+.|.+...-.+ .|.+-+. .
T Consensus 183 --DFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~--~T~aW~r~p~~~~-~P~GRRS-----H-------- 244 (392)
T KOG4693|consen 183 --DFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL--ATGAWTRTPENTM-KPGGRRS-----H-------- 244 (392)
T ss_pred --hhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEec--cccccccCCCCCc-CCCcccc-----c--------
Confidence 1223455667776665321 11234445543 2467987533222 2222110 0
Q ss_pred CceeEEEEEccCCcEEEEec--------CCEEEEEeCCCCcEEEEEEeCC
Q 015251 347 GRVVRVVCILEKGEILLEYK--------SRVLVSYDPKRRTFNEFVFKGT 388 (410)
Q Consensus 347 ~~~~~~~~~~~~g~il~~~~--------~~~l~~yd~~~~~~~~v~~~~~ 388 (410)
..+.-||++.+.-+ -..|+.||++|..|+.|...|.
T Consensus 245 ------S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 245 ------STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred ------ceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCC
Confidence 12233666655421 1358999999999999997763
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.05 E-value=0.86 Score=45.66 Aligned_cols=158 Identities=10% Similarity=0.082 Sum_probs=95.4
Q ss_pred eEEEEcccccceeeCCCCCCCCC---CceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCC
Q 015251 140 AICIYNPFTRDYIELPKSMQYPD---QEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSP 216 (410)
Q Consensus 140 ~~~V~NP~T~~~~~LP~~~~~~~---~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~ 216 (410)
.++|+|-.++.|......-..+. +..++..+ =+++.++.... ... ....++.|+..|+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~-------~~l~lfGG~~~---~~~---------~~~~l~~~d~~t~ 149 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG-------DKLYLFGGTDK---KYR---------NLNELHSLDLSTR 149 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEEC-------CeEEEEccccC---CCC---------ChhheEeccCCCC
Confidence 49999999988887765332221 11222211 23444432111 000 1368999999999
Q ss_pred ceeecCCCCc--eeecCCcceEECCeEEEEecCCCCC-CCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEE
Q 015251 217 AWRSKGKLAY--QFVRRPSEALVKGRLHWVTRPRRYS-PVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSV 293 (410)
Q Consensus 217 ~Wr~~~~~p~--~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~ 293 (410)
+|+.+..... ........+..+..+|.+....... ..+.+.+||+.+.+|..+..............++..++++++
T Consensus 150 ~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v 229 (482)
T KOG0379|consen 150 TWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLV 229 (482)
T ss_pred cEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEE
Confidence 9998753221 1123344556667777776553222 467899999999999988554322222344567888999988
Q ss_pred EEeCC---CCeEEEEEEeeCCCCCceee
Q 015251 294 AVYGN---YGKLEIWVMKDYNVKESWAK 318 (410)
Q Consensus 294 ~~~~~---~~~l~IW~l~~~~~~~~W~~ 318 (410)
+.... ..-=++|.|+=. ...|.+
T Consensus 230 ~gG~~~~~~~l~D~~~ldl~--~~~W~~ 255 (482)
T KOG0379|consen 230 FGGGDDGDVYLNDVHILDLS--TWEWKL 255 (482)
T ss_pred EeccccCCceecceEeeecc--cceeee
Confidence 87543 234589999853 356774
No 33
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.87 E-value=0.0029 Score=57.42 Aligned_cols=45 Identities=33% Similarity=0.573 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHHHccCC-----cccccceecccHhhHhhhCChhhhhhhh
Q 015251 25 METLPREIVLHILLRLP-----ITSLVQFKFVCRAWRALAQDPLLANLHN 69 (410)
Q Consensus 25 ~~~LP~Dll~eIL~rLP-----~~sl~r~r~VcK~W~~li~s~~F~~~~~ 69 (410)
+..||||++.+||.++= ..+|-++.+|||.|+-...+|.|-+.-+
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC 156 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC 156 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence 57899999999998764 5899999999999999999998877644
No 34
>PF13964 Kelch_6: Kelch motif
Probab=95.33 E-value=0.044 Score=35.91 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=32.2
Q ss_pred CcceEECCeEEEEecCCC-CCCCceEEEEEcCCceeeEEc
Q 015251 232 PSEALVKGRLHWVTRPRR-YSPVRGIVSFDIADEQFREVP 270 (410)
Q Consensus 232 ~~~v~~~G~lyw~~~~~~-~~~~~~Il~fDl~~e~~~~i~ 270 (410)
.+.|.++|.||.+..... ......+..||+++++|+.++
T Consensus 5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 456889999999988744 345678999999999999984
No 35
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=94.28 E-value=1.5 Score=41.84 Aligned_cols=135 Identities=14% Similarity=0.228 Sum_probs=79.5
Q ss_pred ceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEEEEeC----C----CCeEEEEEEeeCCCCCceeeEEEeccC
Q 015251 254 RGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVYG----N----YGKLEIWVMKDYNVKESWAKELNIGAY 325 (410)
Q Consensus 254 ~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~~~~~----~----~~~l~IW~l~~~~~~~~W~~~~~i~~~ 325 (410)
+.+.+||+.+.+|..+.-|...........++.-.|-|.+.... + ..--++|+++=- ...|.+...-+.+
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~--trkweql~~~g~P 175 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLK--TRKWEQLEFGGGP 175 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeec--cchheeeccCCCC
Confidence 56999999999999884442111111122233444666666432 1 123689999752 4679986644443
Q ss_pred cCcccccccCCcchhhcccCCCceeEEEEEcc-CCcEEEEecCCEEEEEeCCCCcEEEEEEeCC----CCeEEEEEe-ec
Q 015251 326 IPKGLKQSLDRPLKIWKNSLNGRVVRVVCILE-KGEILLEYKSRVLVSYDPKRRTFNEFVFKGT----PNWFQTIVH-QG 399 (410)
Q Consensus 326 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~il~~~~~~~l~~yd~~~~~~~~v~~~~~----~~~~~~~~y-~~ 399 (410)
.|+ -++.+..||.. .+-+=+|.. +++.++... |++||++|=+|.++...|. .+.++.++| ..
T Consensus 176 S~R-----SGHRMvawK~~----lilFGGFhd~nr~y~YyND---vy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg 243 (521)
T KOG1230|consen 176 SPR-----SGHRMVAWKRQ----LILFGGFHDSNRDYIYYND---VYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQG 243 (521)
T ss_pred CCC-----ccceeEEeeee----EEEEcceecCCCceEEeee---eEEEeccceeeeeccCCCCCCCCCCcceEEecCCC
Confidence 333 24455556532 222234432 345555544 8999999999999998662 366777777 55
Q ss_pred Ccc
Q 015251 400 SFN 402 (410)
Q Consensus 400 slv 402 (410)
+.+
T Consensus 244 ~i~ 246 (521)
T KOG1230|consen 244 GIV 246 (521)
T ss_pred cEE
Confidence 443
No 36
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=93.85 E-value=0.14 Score=32.77 Aligned_cols=38 Identities=11% Similarity=0.236 Sum_probs=31.3
Q ss_pred CcceEECCeEEEEecCCC-CCCCceEEEEEcCCceeeEE
Q 015251 232 PSEALVKGRLHWVTRPRR-YSPVRGIVSFDIADEQFREV 269 (410)
Q Consensus 232 ~~~v~~~G~lyw~~~~~~-~~~~~~Il~fDl~~e~~~~i 269 (410)
...+.++|.+|.+..... ......+..||+.+.+|..+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~ 43 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEEL 43 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEc
Confidence 346789999999987744 44567899999999999987
No 37
>PF13964 Kelch_6: Kelch motif
Probab=92.80 E-value=0.29 Score=31.93 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.2
Q ss_pred CceEEEEcccccceeeCCCCCC
Q 015251 138 NDAICIYNPFTRDYIELPKSMQ 159 (410)
Q Consensus 138 ~~~~~V~NP~T~~~~~LP~~~~ 159 (410)
.+.++++||.|++|.++|+.+.
T Consensus 27 ~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred cccEEEEcCCCCcEEECCCCCC
Confidence 3689999999999999998764
No 38
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=92.29 E-value=1.2 Score=40.29 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=72.5
Q ss_pred EEeccCceEEEeeccCCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccccccc
Q 015251 122 AVGSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRV 201 (410)
Q Consensus 122 ~~~s~~Gll~l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~ 201 (410)
|++.-+|-|-...- ..+.+...||.++.--.+|+|........ ...-|+. .-+.+..
T Consensus 194 i~atpdGsvwyasl-agnaiaridp~~~~aev~p~P~~~~~gsR--riwsdpi----g~~witt---------------- 250 (353)
T COG4257 194 ICATPDGSVWYASL-AGNAIARIDPFAGHAEVVPQPNALKAGSR--RIWSDPI----GRAWITT---------------- 250 (353)
T ss_pred eEECCCCcEEEEec-cccceEEcccccCCcceecCCCccccccc--ccccCcc----CcEEEec----------------
Confidence 45555555544422 24567778999998888888654221111 1223332 1122221
Q ss_pred ccCCceEEEEEeCCCceeecCCCCceeecCCcceEECC-eEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCC
Q 015251 202 IYPRSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKG-RLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDC 274 (410)
Q Consensus 202 ~~~~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~ 274 (410)
+....++-|+..+.+|++..-+..... ..+++++. -.-|+..- ..+.|..||.++++|.+++.|..
T Consensus 251 -wg~g~l~rfdPs~~sW~eypLPgs~ar--pys~rVD~~grVW~sea----~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 251 -WGTGSLHRFDPSVTSWIEYPLPGSKAR--PYSMRVDRHGRVWLSEA----DAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred -cCCceeeEeCcccccceeeeCCCCCCC--cceeeeccCCcEEeecc----ccCceeecCcccceEEEecCCCC
Confidence 113578889999999998753322221 22344432 24466433 36899999999999999999863
No 39
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=92.17 E-value=1.3 Score=35.75 Aligned_cols=71 Identities=24% Similarity=0.352 Sum_probs=50.3
Q ss_pred ceEEEEEcCCc--eeeEEcCCCCCCCC----------CcceEEEEeCCeEEEEEeC---------CCCeEEEEEEeeC-C
Q 015251 254 RGIVSFDIADE--QFREVPKPDCGGLN----------RCNYHLTVLSGCLSVAVYG---------NYGKLEIWVMKDY-N 311 (410)
Q Consensus 254 ~~Il~fDl~~e--~~~~i~lP~~~~~~----------~~~~~l~~~~G~L~~~~~~---------~~~~l~IW~l~~~-~ 311 (410)
..|+..|+-++ .++.|+||...... .....+++.+|+|-++... ...++.+|.|... +
T Consensus 6 ~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~ 85 (131)
T PF07762_consen 6 RGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG 85 (131)
T ss_pred CCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence 45788888655 78889998643211 2234688899999887642 2347999999985 2
Q ss_pred CCCceeeEEEecc
Q 015251 312 VKESWAKELNIGA 324 (410)
Q Consensus 312 ~~~~W~~~~~i~~ 324 (410)
....|.+.+.++.
T Consensus 86 ~~~~W~~d~~v~~ 98 (131)
T PF07762_consen 86 SSWEWKKDCEVDL 98 (131)
T ss_pred CCCCEEEeEEEEh
Confidence 3578999999887
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=91.79 E-value=0.54 Score=30.48 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=31.9
Q ss_pred CcceEECCeEEEEecC---CCCCCCceEEEEEcCCceeeEEcCC
Q 015251 232 PSEALVKGRLHWVTRP---RRYSPVRGIVSFDIADEQFREVPKP 272 (410)
Q Consensus 232 ~~~v~~~G~lyw~~~~---~~~~~~~~Il~fDl~~e~~~~i~lP 272 (410)
..++..+|+||.+... ........+-.||+++.+|..++.+
T Consensus 5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence 3567889999999876 2334557899999999999988543
No 41
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=89.47 E-value=7.7 Score=36.99 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=66.3
Q ss_pred CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEE--E---
Q 015251 138 NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVY--T--- 212 (410)
Q Consensus 138 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vy--s--- 212 (410)
.....|+++.|+....+|....... .. +.+.. + -+|..+.........+. ... ..+|++ +
T Consensus 85 ~~~t~vyDt~t~av~~~P~l~~pk~-~p-isv~V----G-~~LY~m~~~~~~~~~~~------~~~--~~FE~l~~~~~~ 149 (342)
T PF07893_consen 85 SGRTLVYDTDTRAVATGPRLHSPKR-CP-ISVSV----G-DKLYAMDRSPFPEPAGR------PDF--PCFEALVYRPPP 149 (342)
T ss_pred CCCeEEEECCCCeEeccCCCCCCCc-ce-EEEEe----C-CeEEEeeccCccccccC------ccc--eeEEEecccccc
Confidence 3578999999999999998543221 11 22221 1 23555533222100000 000 144444 3
Q ss_pred -----eCCCceeecCCCCceee-------cCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEE---cCCC
Q 015251 213 -----VGSPAWRSKGKLAYQFV-------RRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREV---PKPD 273 (410)
Q Consensus 213 -----s~t~~Wr~~~~~p~~~~-------~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i---~lP~ 273 (410)
..+-+|+.++.+|+... ..+.+|+ +|.--|+..... ...-.+||+.+.+|+.. .||.
T Consensus 150 ~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~---~~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 150 DDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGR---RWGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred ccccCCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCC---ceEEEEEEcCCcceeeccceecCc
Confidence 22238888887775433 2344555 888888865510 12699999999999887 7775
No 42
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=88.79 E-value=17 Score=32.52 Aligned_cols=203 Identities=14% Similarity=0.104 Sum_probs=108.0
Q ss_pred eccCceEEEeeccCCceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCcccccccccc
Q 015251 124 GSCNGLLCLSDSLFNDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIY 203 (410)
Q Consensus 124 ~s~~Gll~l~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~ 203 (410)
...+|-|.+.+. ..+.++.++|.+++...+..+. ..|+.++...+ +++...
T Consensus 8 d~~~g~l~~~D~-~~~~i~~~~~~~~~~~~~~~~~-------~~G~~~~~~~g--~l~v~~------------------- 58 (246)
T PF08450_consen 8 DPRDGRLYWVDI-PGGRIYRVDPDTGEVEVIDLPG-------PNGMAFDRPDG--RLYVAD------------------- 58 (246)
T ss_dssp ETTTTEEEEEET-TTTEEEEEETTTTEEEEEESSS-------EEEEEEECTTS--EEEEEE-------------------
T ss_pred ECCCCEEEEEEc-CCCEEEEEECCCCeEEEEecCC-------CceEEEEccCC--EEEEEE-------------------
Confidence 444566655553 3578999999999886644432 45667774332 232221
Q ss_pred CCceEEEEEeCCCceeecCCCCc---eee-cCCcceEECCeEEEEecCCCC-CCC--ceEEEEEcCCceeeEE----cCC
Q 015251 204 PRSDVQVYTVGSPAWRSKGKLAY---QFV-RRPSEALVKGRLHWVTRPRRY-SPV--RGIVSFDIADEQFREV----PKP 272 (410)
Q Consensus 204 ~~~~~~Vyss~t~~Wr~~~~~p~---~~~-~~~~~v~~~G~lyw~~~~~~~-~~~--~~Il~fDl~~e~~~~i----~lP 272 (410)
.....+++..+++++.+...+. ... ...-.+--+|.+|.-...... ... ..|..++.. .+...+ ..|
T Consensus 59 -~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p 136 (246)
T PF08450_consen 59 -SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP 136 (246)
T ss_dssp -TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE
T ss_pred -cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc
Confidence 1455677888998887654311 111 111233447887765543211 111 679999999 444333 222
Q ss_pred CCCCCCCcceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEe-ccCcCcccccccCCcchhhcccCCCceeE
Q 015251 273 DCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNI-GAYIPKGLKQSLDRPLKIWKNSLNGRVVR 351 (410)
Q Consensus 273 ~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 351 (410)
. .-...-+|+..++....... ||..+-......+.....+ ++ +... ....
T Consensus 137 N--------Gi~~s~dg~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~--~~~~-----------------g~pD 187 (246)
T PF08450_consen 137 N--------GIAFSPDGKTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDF--PGGP-----------------GYPD 187 (246)
T ss_dssp E--------EEEEETTSSEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE---SSSS-----------------CEEE
T ss_pred c--------ceEECCcchheeecccccce--eEEEeccccccceeeeeeEEEc--CCCC-----------------cCCC
Confidence 1 11233356544444322333 6766643223345544433 22 1100 0123
Q ss_pred EEEEccCCcEEEE-ecCCEEEEEeCCCCcEEEEEEe
Q 015251 352 VVCILEKGEILLE-YKSRVLVSYDPKRRTFNEFVFK 386 (410)
Q Consensus 352 ~~~~~~~g~il~~-~~~~~l~~yd~~~~~~~~v~~~ 386 (410)
=+++..+|.|++. ...+++..||++.+.++.+..+
T Consensus 188 G~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELP 223 (246)
T ss_dssp EEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-S
T ss_pred cceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCC
Confidence 3566778888775 4568899999998888888776
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.93 E-value=0.22 Score=47.55 Aligned_cols=41 Identities=29% Similarity=0.487 Sum_probs=36.6
Q ss_pred CCCCCCCcHHHHHHHHccCCcccccceecccHhhHhhhCCh
Q 015251 22 ATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDP 62 (410)
Q Consensus 22 ~~~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~ 62 (410)
....-.||.|++..||+-|..+++.|++.+|+.|+.+..+.
T Consensus 69 ~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 69 NSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 34455799999999999999999999999999999998764
No 44
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=87.81 E-value=13 Score=35.34 Aligned_cols=83 Identities=17% Similarity=0.320 Sum_probs=50.8
Q ss_pred eEEEEEeCCCceeecCC--CCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCce-----------eeEEcCCC
Q 015251 207 DVQVYTVGSPAWRSKGK--LAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ-----------FREVPKPD 273 (410)
Q Consensus 207 ~~~Vyss~t~~Wr~~~~--~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~-----------~~~i~lP~ 273 (410)
.+.-|+-.+.+|+..++ +|+ .+.+.|+..-=-|+.-..... ...|-+.|+.... |..+..|.
T Consensus 200 GTysfDt~~~~W~~~GdW~LPF----~G~a~y~~el~~W~Gls~~~~-~~~lca~dv~~~~~~~~pp~~~~~~~~l~~~~ 274 (342)
T PF07893_consen 200 GTYSFDTESHEWRKHGDWMLPF----HGQAEYVPELDLWFGLSSDGG-GGHLCACDVSSADSASPPPEWKLTWEELFPPE 274 (342)
T ss_pred EEEEEEcCCcceeeccceecCc----CCccEECCCcCeEEEeccCCC-CcEEEEEeccccccCCCCCcceeccccccccc
Confidence 57778888889999974 454 345667766667877652211 1588999997632 22233332
Q ss_pred CCCCCCcceEEEEe-CCeEEEEEe
Q 015251 274 CGGLNRCNYHLTVL-SGCLSVAVY 296 (410)
Q Consensus 274 ~~~~~~~~~~l~~~-~G~L~~~~~ 296 (410)
. ......+|+.+ +|+.|++..
T Consensus 275 ~--~~~~~~~Lv~lG~grFCi~~~ 296 (342)
T PF07893_consen 275 E--WRHVGATLVYLGSGRFCIVEF 296 (342)
T ss_pred c--ccccCceEEECCCCCEEEEEE
Confidence 2 12234567777 457787754
No 45
>PLN02772 guanylate kinase
Probab=85.86 E-value=6.6 Score=37.90 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=51.7
Q ss_pred CCcceEECCeEEEEecCCCCC-CCceEEEEEcCCceeeEE----cCCCCCCCCCcceEEEEe-CCeEEEEEeCCCCeEEE
Q 015251 231 RPSEALVKGRLHWVTRPRRYS-PVRGIVSFDIADEQFREV----PKPDCGGLNRCNYHLTVL-SGCLSVAVYGNYGKLEI 304 (410)
Q Consensus 231 ~~~~v~~~G~lyw~~~~~~~~-~~~~Il~fDl~~e~~~~i----~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~l~I 304 (410)
...+|.++..+|.+..+.+.. ....+.+||..+.+|..- ..|... ...+.+.+ +++|.++.-+....-+|
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r----~GhSa~v~~~~rilv~~~~~~~~~~~ 102 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPC----KGYSAVVLNKDRILVIKKGSAPDDSI 102 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCC----CcceEEEECCceEEEEeCCCCCccce
Confidence 356788999999998764332 457899999999999753 223211 12234444 67888887655567899
Q ss_pred EEEee
Q 015251 305 WVMKD 309 (410)
Q Consensus 305 W~l~~ 309 (410)
|.|+=
T Consensus 103 w~l~~ 107 (398)
T PLN02772 103 WFLEV 107 (398)
T ss_pred EEEEc
Confidence 99983
No 46
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=85.35 E-value=33 Score=32.26 Aligned_cols=124 Identities=15% Similarity=0.183 Sum_probs=79.6
Q ss_pred CCeEEEEecCCCCCCCceEEEEEcCCceeeEE---cCCCCCCCCCcceEE-EEeCCeEEEEEeCCCCeEEEEEEeeCCCC
Q 015251 238 KGRLHWVTRPRRYSPVRGIVSFDIADEQFREV---PKPDCGGLNRCNYHL-TVLSGCLSVAVYGNYGKLEIWVMKDYNVK 313 (410)
Q Consensus 238 ~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i---~lP~~~~~~~~~~~l-~~~~G~L~~~~~~~~~~l~IW~l~~~~~~ 313 (410)
+|.+-|.+.- +.+.|..||++....... .+++..+ ...+ .--+|+++++...=..++++|..+.. .
T Consensus 155 ~~~~l~v~DL----G~Dri~~y~~~dg~L~~~~~~~v~~G~G----PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~--~ 224 (346)
T COG2706 155 DGRYLVVPDL----GTDRIFLYDLDDGKLTPADPAEVKPGAG----PRHIVFHPNGKYAYLVNELNSTVDVLEYNPA--V 224 (346)
T ss_pred CCCEEEEeec----CCceEEEEEcccCccccccccccCCCCC----cceEEEcCCCcEEEEEeccCCEEEEEEEcCC--C
Confidence 4555555543 457888888886665432 3443322 2223 33478888776544679999998864 3
Q ss_pred CceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEecC----CEEEEEeCCCCcEEEEEEe
Q 015251 314 ESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKS----RVLVSYDPKRRTFNEFVFK 386 (410)
Q Consensus 314 ~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~----~~l~~yd~~~~~~~~v~~~ 386 (410)
++-...-+|.. +|.++ ........|.+..||++++..+. -.++.-|..+++++-+...
T Consensus 225 g~~~~lQ~i~t-lP~dF--------------~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 225 GKFEELQTIDT-LPEDF--------------TGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred ceEEEeeeecc-Ccccc--------------CCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 45666666654 55432 22346778888999999987543 2577888999998888764
No 47
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=84.87 E-value=1.4 Score=28.43 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=22.2
Q ss_pred cceEE-CCeEEEEecCCCC-CCCceEEEEEcCCceeeEE
Q 015251 233 SEALV-KGRLHWVTRPRRY-SPVRGIVSFDIADEQFREV 269 (410)
Q Consensus 233 ~~v~~-~G~lyw~~~~~~~-~~~~~Il~fDl~~e~~~~i 269 (410)
.++.+ ++.+|.+...... ...+.+..||+.+.+|+.+
T Consensus 6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 34555 5788887765322 2346789999999999998
No 48
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=84.10 E-value=29 Score=30.53 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=55.6
Q ss_pred cCceEEEeeccCCceEEEEcccccceee---CCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccc
Q 015251 126 CNGLLCLSDSLFNDAICIYNPFTRDYIE---LPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVI 202 (410)
Q Consensus 126 ~~Gll~l~~~~~~~~~~V~NP~T~~~~~---LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~ 202 (410)
-+|.++... ....++.+|+.|++... ++.+... .. .. ..-+|+... .
T Consensus 35 ~~~~v~~~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~---~~---~~-----~~~~v~v~~---~-------------- 84 (238)
T PF13360_consen 35 DGGRVYVAS--GDGNLYALDAKTGKVLWRFDLPGPISG---AP---VV-----DGGRVYVGT---S-------------- 84 (238)
T ss_dssp ETTEEEEEE--TTSEEEEEETTTSEEEEEEECSSCGGS---GE---EE-----ETTEEEEEE---T--------------
T ss_pred eCCEEEEEc--CCCEEEEEECCCCCEEEEeeccccccc---ee---ee-----ccccccccc---c--------------
Confidence 677777764 46789999999998643 3322111 10 11 112332221 1
Q ss_pred cCCceEEEEEeCCC--ceee-cCCCCc-eeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCcee
Q 015251 203 YPRSDVQVYTVGSP--AWRS-KGKLAY-QFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQF 266 (410)
Q Consensus 203 ~~~~~~~Vyss~t~--~Wr~-~~~~p~-~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~ 266 (410)
...+..++..++ .|+. ....+. ...........++.+|..... ..|.++|+.+.+-
T Consensus 85 --~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 85 --DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS------GKLVALDPKTGKL 144 (238)
T ss_dssp --TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC------SEEEEEETTTTEE
T ss_pred --eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc------CcEEEEecCCCcE
Confidence 135667776666 7983 432222 122222233446677766655 7999999987653
No 49
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=82.94 E-value=27 Score=33.92 Aligned_cols=113 Identities=14% Similarity=0.210 Sum_probs=62.2
Q ss_pred cceEECCeEEEEecCCCCCCCceEEEEEcCCce--eeEEcCCCCCCC------CCcceEEEEeCCeEEEEEeCCCCeEEE
Q 015251 233 SEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ--FREVPKPDCGGL------NRCNYHLTVLSGCLSVAVYGNYGKLEI 304 (410)
Q Consensus 233 ~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~--~~~i~lP~~~~~------~~~~~~l~~~~G~L~~~~~~~~~~l~I 304 (410)
.++..+|.+|..... +.+.+||.++.+ |+ .+++..... .......+..+|++++... .. .+
T Consensus 64 sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--~g--~l 132 (394)
T PRK11138 64 HPAVAYNKVYAADRA------GLVKALDADTGKEIWS-VDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--KG--QV 132 (394)
T ss_pred ccEEECCEEEEECCC------CeEEEEECCCCcEeeE-EcCCCcccccccccccccccccEEECCEEEEEcC--CC--EE
Confidence 457889999988765 689999987554 54 233321100 0011224556777665432 22 35
Q ss_pred EEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEecCCEEEEEeCCCCcEEE
Q 015251 305 WVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNE 382 (410)
Q Consensus 305 W~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~~yd~~~~~~~~ 382 (410)
..++....+..|.....=.. .-.|+. .++.+++...++.++.+|.+|++...
T Consensus 133 ~ald~~tG~~~W~~~~~~~~------------------------~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W 184 (394)
T PRK11138 133 YALNAEDGEVAWQTKVAGEA------------------------LSRPVV--SDGLVLVHTSNGMLQALNESDGAVKW 184 (394)
T ss_pred EEEECCCCCCcccccCCCce------------------------ecCCEE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 55553223678876431000 011211 14556666666778899998888654
No 50
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=81.28 E-value=2.3 Score=26.99 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=17.9
Q ss_pred CceEEEEEeCCCceeecCCCC
Q 015251 205 RSDVQVYTVGSPAWRSKGKLA 225 (410)
Q Consensus 205 ~~~~~Vyss~t~~Wr~~~~~p 225 (410)
...+++|+..+++|+.++.+|
T Consensus 27 ~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 27 TNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEEEETTTTEEEEEEEES
T ss_pred eeeEEEEeCCCCEEEEcCCCC
Confidence 368999999999999887654
No 51
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.47 E-value=44 Score=30.12 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=87.6
Q ss_pred ceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCC----ceeeEEcCCCCCCCCCcc
Q 015251 206 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIAD----EQFREVPKPDCGGLNRCN 281 (410)
Q Consensus 206 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~----e~~~~i~lP~~~~~~~~~ 281 (410)
....+|+..++++|.+......++ .+.++.-||.+.-..... .+...|-.|+..+ ..|. ..|........-
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FC-Sgg~~L~dG~ll~tGG~~--~G~~~ir~~~p~~~~~~~~w~--e~~~~m~~~RWY 120 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFC-SGGAFLPDGRLLQTGGDN--DGNKAIRIFTPCTSDGTCDWT--ESPNDMQSGRWY 120 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcc-cCcCCCCCCCEEEeCCCC--ccccceEEEecCCCCCCCCce--ECcccccCCCcc
Confidence 567889999999998753222222 222345678776554431 2345677788754 3443 333221111122
Q ss_pred eEEEEe-CCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCc
Q 015251 282 YHLTVL-SGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE 360 (410)
Q Consensus 282 ~~l~~~-~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 360 (410)
.+...+ +|++.++......+.|.|=-+... ...+. +.+ ...... ......+..+.+..+|+
T Consensus 121 pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~-~~~~~----~~~--l~~~~~-----------~~~~nlYP~~~llPdG~ 182 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNPTYEFWPPKGPG-PGPVT----LPF--LSQTSD-----------TLPNNLYPFVHLLPDGN 182 (243)
T ss_pred ccceECCCCCEEEEeCcCCCcccccCCccCC-CCcee----eec--chhhhc-----------cCccccCceEEEcCCCC
Confidence 233443 788888877655556655322111 11111 111 000000 00111344456678999
Q ss_pred EEEEecCCEEEEEeCCCCcE-EEEEEeCCCCeEEEEEeecCccc
Q 015251 361 ILLEYKSRVLVSYDPKRRTF-NEFVFKGTPNWFQTIVHQGSFNW 403 (410)
Q Consensus 361 il~~~~~~~l~~yd~~~~~~-~~v~~~~~~~~~~~~~y~~slv~ 403 (410)
|++..+.+ -..||.+++++ +.+ +..+...+..+...|-|-
T Consensus 183 lFi~an~~-s~i~d~~~n~v~~~l--P~lPg~~R~YP~sgssvm 223 (243)
T PF07250_consen 183 LFIFANRG-SIIYDYKTNTVVRTL--PDLPGGPRNYPASGSSVM 223 (243)
T ss_pred EEEEEcCC-cEEEeCCCCeEEeeC--CCCCCCceecCCCcceEE
Confidence 99887755 56789999976 333 333333455555555443
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=80.37 E-value=41 Score=29.72 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=24.5
Q ss_pred EECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCC
Q 015251 236 LVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPD 273 (410)
Q Consensus 236 ~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~ 273 (410)
.+||-+ ++... ..++..|+.|+++..+|.|+
T Consensus 3 sCnGLl-c~~~~------~~~~V~NP~T~~~~~LP~~~ 33 (230)
T TIGR01640 3 PCDGLI-CFSYG------KRLVVWNPSTGQSRWLPTPK 33 (230)
T ss_pred ccceEE-EEecC------CcEEEECCCCCCEEecCCCC
Confidence 478888 55433 57999999999999998765
No 53
>smart00612 Kelch Kelch domain.
Probab=79.29 E-value=2.3 Score=26.58 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=19.1
Q ss_pred ceEEEEEeCCCceeecCCCCcee
Q 015251 206 SDVQVYTVGSPAWRSKGKLAYQF 228 (410)
Q Consensus 206 ~~~~Vyss~t~~Wr~~~~~p~~~ 228 (410)
..+++|+.++++|..++.++...
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCcc
Confidence 67899999999999988766543
No 54
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=77.28 E-value=68 Score=30.49 Aligned_cols=123 Identities=18% Similarity=0.274 Sum_probs=74.1
Q ss_pred CCeEEEEecCCCCCCCceEEEEEcCCce--e---eEEcCCCCCCCCCcceEEEE-eCCeEEEEEeCCCCeEEEEEEeeCC
Q 015251 238 KGRLHWVTRPRRYSPVRGIVSFDIADEQ--F---REVPKPDCGGLNRCNYHLTV-LSGCLSVAVYGNYGKLEIWVMKDYN 311 (410)
Q Consensus 238 ~G~lyw~~~~~~~~~~~~Il~fDl~~e~--~---~~i~lP~~~~~~~~~~~l~~-~~G~L~~~~~~~~~~l~IW~l~~~~ 311 (410)
+|..-|.+.. +.+.|..|++..+. + ..+.+|...+ ...++- -+|+.+++......++.++.++..
T Consensus 154 dg~~v~v~dl----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G----PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~- 224 (345)
T PF10282_consen 154 DGRFVYVPDL----GADRVYVYDIDDDTGKLTPVDSIKVPPGSG----PRHLAFSPDGKYAYVVNELSNTVSVFDYDPS- 224 (345)
T ss_dssp TSSEEEEEET----TTTEEEEEEE-TTS-TEEEEEEEECSTTSS----EEEEEE-TTSSEEEEEETTTTEEEEEEEETT-
T ss_pred CCCEEEEEec----CCCEEEEEEEeCCCceEEEeeccccccCCC----CcEEEEcCCcCEEEEecCCCCcEEEEeeccc-
Confidence 4665566544 45789999987765 5 3356665332 223333 366666665555778999988732
Q ss_pred CCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEe--cCCEEEEEeC--CCCcEEEEEE
Q 015251 312 VKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEY--KSRVLVSYDP--KRRTFNEFVF 385 (410)
Q Consensus 312 ~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~--~~~~l~~yd~--~~~~~~~v~~ 385 (410)
+..+....++.. +|.+.. ....-.-+.+..||+.++.. ....|..|++ .+++++.+..
T Consensus 225 -~g~~~~~~~~~~-~~~~~~--------------~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 225 -DGSLTEIQTIST-LPEGFT--------------GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp -TTEEEEEEEEES-CETTSC--------------SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred -CCceeEEEEeee-cccccc--------------ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 346777777765 232211 11134456778889887764 4567888886 5678887764
No 55
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=76.77 E-value=2.9 Score=26.85 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=14.1
Q ss_pred ceEEEEcccccceeeCCCCC
Q 015251 139 DAICIYNPFTRDYIELPKSM 158 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~LP~~~ 158 (410)
+.++++|+.|++|.+||++|
T Consensus 29 ~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 29 NDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --EEEEETTTTEEEE--SS-
T ss_pred CCEEEEECCCCEEEECCCCC
Confidence 47899999999999998765
No 56
>smart00612 Kelch Kelch domain.
Probab=75.79 E-value=9.8 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=18.9
Q ss_pred ceEEEEcccccceeeCCCCCCCC
Q 015251 139 DAICIYNPFTRDYIELPKSMQYP 161 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~LP~~~~~~ 161 (410)
..+.++||.|.+|..+|+.+..+
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~~r 37 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPTPR 37 (47)
T ss_pred eeEEEECCCCCeEccCCCCCCcc
Confidence 47889999999999999866543
No 57
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=75.42 E-value=6.3 Score=25.35 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=22.0
Q ss_pred CCeEEEEecCC--CCCCCceEEEEEcCCceeeEE
Q 015251 238 KGRLHWVTRPR--RYSPVRGIVSFDIADEQFREV 269 (410)
Q Consensus 238 ~G~lyw~~~~~--~~~~~~~Il~fDl~~e~~~~i 269 (410)
++.+|.+.... .....+.+.+||+.+.+|+.+
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~ 34 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRI 34 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEEC
Confidence 34556555443 223346799999999999988
No 58
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=74.99 E-value=1.1 Score=45.50 Aligned_cols=47 Identities=34% Similarity=0.458 Sum_probs=41.7
Q ss_pred cCCCCCCCcHHHHHHHHccCCcccccceecccHhhHhhhCChhhhhh
Q 015251 21 QATGMETLPREIVLHILLRLPITSLVQFKFVCRAWRALAQDPLLANL 67 (410)
Q Consensus 21 ~~~~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK~W~~li~s~~F~~~ 67 (410)
....+..||.++...||..|+.+++++++.||+.|+.++.+......
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 34568889999999999999999999999999999999988766653
No 59
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=73.19 E-value=5.9 Score=25.46 Aligned_cols=23 Identities=4% Similarity=0.108 Sum_probs=18.8
Q ss_pred ceEEEEcccccceeeCCCCCCCC
Q 015251 139 DAICIYNPFTRDYIELPKSMQYP 161 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~LP~~~~~~ 161 (410)
+.++++||.|++|.+++..|..+
T Consensus 19 nd~~~~~~~~~~W~~~~~~P~~R 41 (49)
T PF13415_consen 19 NDVWVFDLDTNTWTRIGDLPPPR 41 (49)
T ss_pred cCEEEEECCCCEEEECCCCCCCc
Confidence 57999999999999997755433
No 60
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=72.09 E-value=92 Score=29.58 Aligned_cols=146 Identities=13% Similarity=0.166 Sum_probs=78.1
Q ss_pred ceEEEEEeCCCc--eeecC-------CCCceeecCCcceEECC-eEEEEecCCCCCCCceEEEEEcC--CceeeEE----
Q 015251 206 SDVQVYTVGSPA--WRSKG-------KLAYQFVRRPSEALVKG-RLHWVTRPRRYSPVRGIVSFDIA--DEQFREV---- 269 (410)
Q Consensus 206 ~~~~Vyss~t~~--Wr~~~-------~~p~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~Il~fDl~--~e~~~~i---- 269 (410)
..+.+|+...+. ..... .-|..+.. .-+| .+|..... .+.|.+|++. +.++..+
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f-----~pdg~~~Yv~~e~-----s~~v~v~~~~~~~g~~~~~~~~~ 235 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF-----SPDGKYAYVVNEL-----SNTVSVFDYDPSDGSLTEIQTIS 235 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE------TTSSEEEEEETT-----TTEEEEEEEETTTTEEEEEEEEE
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEE-----cCCcCEEEEecCC-----CCcEEEEeecccCCceeEEEEee
Confidence 678899888765 43321 11222211 1144 56666654 4678888877 6666654
Q ss_pred cCCCCCCCCCcceEEEEe-CCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCc
Q 015251 270 PKPDCGGLNRCNYHLTVL-SGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGR 348 (410)
Q Consensus 270 ~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~ 348 (410)
.+|...........+... +|+..++.......+.++.+++....-............|
T Consensus 236 ~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P--------------------- 294 (345)
T PF10282_consen 236 TLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP--------------------- 294 (345)
T ss_dssp SCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSE---------------------
T ss_pred eccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCc---------------------
Confidence 344321111122334333 6776666655578899999965322323333222222112
Q ss_pred eeEEEEEccCCcEEEEe--cCCEEEEE--eCCCCcEEEEE
Q 015251 349 VVRVVCILEKGEILLEY--KSRVLVSY--DPKRRTFNEFV 384 (410)
Q Consensus 349 ~~~~~~~~~~g~il~~~--~~~~l~~y--d~~~~~~~~v~ 384 (410)
+-+.+..+|+.++.. .++.+..| |.++++++.+.
T Consensus 295 --r~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 295 --RHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp --EEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred --cEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 234556788877753 34556655 67899998876
No 61
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=71.06 E-value=72 Score=27.93 Aligned_cols=141 Identities=12% Similarity=0.098 Sum_probs=76.8
Q ss_pred ceEEEEEeCCC--ceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceee-EEcCCCCCCCCCcce
Q 015251 206 SDVQVYTVGSP--AWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFR-EVPKPDCGGLNRCNY 282 (410)
Q Consensus 206 ~~~~Vyss~t~--~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~-~i~lP~~~~~~~~~~ 282 (410)
..+..++..++ .|+.--.....- .....+..+|.+|..... ..|.++|..+.+-. ...++.... .
T Consensus 3 g~l~~~d~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~v~~~~~~------~~l~~~d~~tG~~~W~~~~~~~~~-----~ 70 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDLGPGIGG-PVATAVPDGGRVYVASGD------GNLYALDAKTGKVLWRFDLPGPIS-----G 70 (238)
T ss_dssp SEEEEEETTTTEEEEEEECSSSCSS-EEETEEEETTEEEEEETT------SEEEEEETTTSEEEEEEECSSCGG-----S
T ss_pred CEEEEEECCCCCEEEEEECCCCCCC-ccceEEEeCCEEEEEcCC------CEEEEEECCCCCEEEEeecccccc-----c
Confidence 46778888777 688632111100 001134478888888655 89999998666532 234443211 1
Q ss_pred EEEEeCCeEEEEEeCCCCeEEEEEEe-eCCCCCceee-EEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCc
Q 015251 283 HLTVLSGCLSVAVYGNYGKLEIWVMK-DYNVKESWAK-ELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE 360 (410)
Q Consensus 283 ~l~~~~G~L~~~~~~~~~~l~IW~l~-~~~~~~~W~~-~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 360 (410)
.....+|.+++.... . .|+.++ ..| +..|.. ...-+.. + .. ....+ .+ .++.
T Consensus 71 ~~~~~~~~v~v~~~~--~--~l~~~d~~tG-~~~W~~~~~~~~~~-~--~~----------------~~~~~-~~-~~~~ 124 (238)
T PF13360_consen 71 APVVDGGRVYVGTSD--G--SLYALDAKTG-KVLWSIYLTSSPPA-G--VR----------------SSSSP-AV-DGDR 124 (238)
T ss_dssp GEEEETTEEEEEETT--S--EEEEEETTTS-CEEEEEEE-SSCTC-S--TB------------------SEE-EE-ETTE
T ss_pred eeeecccccccccce--e--eeEecccCCc-ceeeeecccccccc-c--cc----------------cccCc-eE-ecCE
Confidence 136667777666532 2 677776 334 678884 3321110 0 00 00111 11 1344
Q ss_pred EEEEecCCEEEEEeCCCCcEEEEE
Q 015251 361 ILLEYKSRVLVSYDPKRRTFNEFV 384 (410)
Q Consensus 361 il~~~~~~~l~~yd~~~~~~~~v~ 384 (410)
+++...++.++.+|+++++...-.
T Consensus 125 ~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 125 LYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEEEETCSEEEEEETTTTEEEEEE
T ss_pred EEEEeccCcEEEEecCCCcEEEEe
Confidence 555666788999999999875433
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=70.82 E-value=85 Score=30.07 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=20.9
Q ss_pred cceEECCeEEEEecCCCCCCCceEEEEEcCCce
Q 015251 233 SEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ 265 (410)
Q Consensus 233 ~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~ 265 (410)
.++..+|.+|..... +.|.+||..+.+
T Consensus 60 ~p~v~~~~v~v~~~~------g~v~a~d~~tG~ 86 (377)
T TIGR03300 60 QPAVAGGKVYAADAD------GTVVALDAETGK 86 (377)
T ss_pred ceEEECCEEEEECCC------CeEEEEEccCCc
Confidence 456788999987765 689999987654
No 63
>PF13013 F-box-like_2: F-box-like domain
Probab=69.10 E-value=2.4 Score=32.86 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCCCCcHHHHHHHHccCCcccccceecccH
Q 015251 24 GMETLPREIVLHILLRLPITSLVQFKFVCR 53 (410)
Q Consensus 24 ~~~~LP~Dll~eIL~rLP~~sl~r~r~VcK 53 (410)
.+.+||+||+..|+..-....+...-..|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 378899999999999999888866555555
No 64
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=68.99 E-value=1.2e+02 Score=29.75 Aligned_cols=114 Identities=11% Similarity=0.110 Sum_probs=63.5
Q ss_pred EECCe-EEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEE--eCCeEEEEEeCCCCeEEEEEEeeCCC
Q 015251 236 LVKGR-LHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTV--LSGCLSVAVYGNYGKLEIWVMKDYNV 312 (410)
Q Consensus 236 ~~~G~-lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~--~~G~L~~~~~~~~~~l~IW~l~~~~~ 312 (410)
+-+|. .-+...+ ..++++||+.+.+...+..|.... ...+...+ -.|...++.. +...|.+-...
T Consensus 266 ~p~G~~~i~~s~r-----rky~ysyDle~ak~~k~~~~~g~e--~~~~e~FeVShd~~fia~~G-~~G~I~lLhak---- 333 (514)
T KOG2055|consen 266 APNGHSVIFTSGR-----RKYLYSYDLETAKVTKLKPPYGVE--EKSMERFEVSHDSNFIAIAG-NNGHIHLLHAK---- 333 (514)
T ss_pred cCCCceEEEeccc-----ceEEEEeeccccccccccCCCCcc--cchhheeEecCCCCeEEEcc-cCceEEeehhh----
Confidence 34665 3334333 479999999999999998875332 11121111 1233222221 23334433322
Q ss_pred CCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEE-ecCCEEEEEeCCCCcEEEEEE
Q 015251 313 KESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLE-YKSRVLVSYDPKRRTFNEFVF 385 (410)
Q Consensus 313 ~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~-~~~~~l~~yd~~~~~~~~v~~ 385 (410)
...|.-.+.|.. .+.-+.+..+|+.++. .+.+.++.+|++++...+...
T Consensus 334 T~eli~s~KieG------------------------~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~ 383 (514)
T KOG2055|consen 334 TKELITSFKIEG------------------------VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV 383 (514)
T ss_pred hhhhhheeeecc------------------------EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence 245666555543 2444566667765554 566789999999997655443
No 65
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=68.78 E-value=9.1 Score=24.57 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=17.1
Q ss_pred CceEEEEEeCCCceeecCCC
Q 015251 205 RSDVQVYTVGSPAWRSKGKL 224 (410)
Q Consensus 205 ~~~~~Vyss~t~~Wr~~~~~ 224 (410)
...+++|+.++.+|+.+..+
T Consensus 29 ~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 29 SNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred cceeEEEECCCCEEeecCCC
Confidence 36899999999999988754
No 66
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=68.58 E-value=9.4 Score=23.26 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=19.0
Q ss_pred CcceEECCeEEEEecCCCCCCCceEEEEEcCC
Q 015251 232 PSEALVKGRLHWVTRPRRYSPVRGIVSFDIAD 263 (410)
Q Consensus 232 ~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~ 263 (410)
...++.+|.+|..+.. +.|.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~d------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC------CEEEEEeCCC
Confidence 3457889999998876 8999999874
No 67
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=68.26 E-value=1.1e+02 Score=29.19 Aligned_cols=113 Identities=11% Similarity=0.115 Sum_probs=65.8
Q ss_pred ceEECCeEEEEecCCCCCCCceEEEEEcCCce--eeEEcCCCCCCCCCcceEEEEeCCeEEEEEeCCCCeEEEEEEeeCC
Q 015251 234 EALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ--FREVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYN 311 (410)
Q Consensus 234 ~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~--~~~i~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~ 311 (410)
.++.+|.+|..... +.|.+||..+.. |+.-.... ......-++.-+|+|++-... . .++.|++..
T Consensus 64 ~~~~dg~v~~~~~~------G~i~A~d~~~g~~~W~~~~~~~---~~~~~~~~~~~~G~i~~g~~~---g-~~y~ld~~~ 130 (370)
T COG1520 64 PADGDGTVYVGTRD------GNIFALNPDTGLVKWSYPLLGA---VAQLSGPILGSDGKIYVGSWD---G-KLYALDAST 130 (370)
T ss_pred cEeeCCeEEEecCC------CcEEEEeCCCCcEEecccCcCc---ceeccCceEEeCCeEEEeccc---c-eEEEEECCC
Confidence 58999999998655 689999998866 65443320 001111223337886554332 1 788888732
Q ss_pred CCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEecCCEEEEEeCCCCcEEEE
Q 015251 312 VKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLVSYDPKRRTFNEF 383 (410)
Q Consensus 312 ~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~~yd~~~~~~~~v 383 (410)
....|.....- . +. ...+ .+..++.+++...+++++..|.+|++.+..
T Consensus 131 G~~~W~~~~~~-~--~~--------------------~~~~-~v~~~~~v~~~s~~g~~~al~~~tG~~~W~ 178 (370)
T COG1520 131 GTLVWSRNVGG-S--PY--------------------YASP-PVVGDGTVYVGTDDGHLYALNADTGTLKWT 178 (370)
T ss_pred CcEEEEEecCC-C--eE--------------------EecC-cEEcCcEEEEecCCCeEEEEEccCCcEEEE
Confidence 26778775432 0 00 0111 222345555555667888999888887554
No 68
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=66.72 E-value=23 Score=27.29 Aligned_cols=40 Identities=20% Similarity=0.465 Sum_probs=30.3
Q ss_pred ceEEEEccccc-ceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEE
Q 015251 139 DAICIYNPFTR-DYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIV 184 (410)
Q Consensus 139 ~~~~V~NP~T~-~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~ 184 (410)
-.++++||.|+ .|+ |..+ ....+.+.+|+..+.|+||.+.
T Consensus 11 A~V~~yd~~tKk~Wv--Ps~~----~~~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 11 AHVFQIDPKTKKNWI--PASK----HAVTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred eEEEEECCCCcceeE--eCCC----CceeEEEEecCCCcEEEEEEec
Confidence 47899999997 776 3322 1456788999999999999863
No 69
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=65.52 E-value=17 Score=20.69 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=19.3
Q ss_pred CCcEEEEecCCEEEEEeCCCCcEEE
Q 015251 358 KGEILLEYKSRVLVSYDPKRRTFNE 382 (410)
Q Consensus 358 ~g~il~~~~~~~l~~yd~~~~~~~~ 382 (410)
+|.+++...++.++++|.++++...
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 4556666777899999999988654
No 70
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=65.41 E-value=1.4e+02 Score=28.97 Aligned_cols=137 Identities=12% Similarity=0.185 Sum_probs=72.6
Q ss_pred ceEEEEEeCCC--ceeecCCCCc-eeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCce--eeE-EcCCCCCC---
Q 015251 206 SDVQVYTVGSP--AWRSKGKLAY-QFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ--FRE-VPKPDCGG--- 276 (410)
Q Consensus 206 ~~~~Vyss~t~--~Wr~~~~~p~-~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~--~~~-i~lP~~~~--- 276 (410)
..+..++..++ .|+.-...|. .......++..+|.+|+.... +.+.++|..+.+ |+. +..|....
T Consensus 170 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~ 243 (394)
T PRK11138 170 GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDN------GRVSAVLMEQGQLIWQQRISQPTGATEID 243 (394)
T ss_pred CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCC------CEEEEEEccCChhhheeccccCCCccchh
Confidence 45777788777 5886543221 222334567788888887655 789999998764 542 22232110
Q ss_pred -CCCcceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEE
Q 015251 277 -LNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCI 355 (410)
Q Consensus 277 -~~~~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (410)
.......-+..+|.+++.... . .+..++-...+..|..... - + ..++
T Consensus 244 ~~~~~~~sP~v~~~~vy~~~~~--g--~l~ald~~tG~~~W~~~~~--~--~----------------------~~~~-- 291 (394)
T PRK11138 244 RLVDVDTTPVVVGGVVYALAYN--G--NLVALDLRSGQIVWKREYG--S--V----------------------NDFA-- 291 (394)
T ss_pred cccccCCCcEEECCEEEEEEcC--C--eEEEEECCCCCEEEeecCC--C--c----------------------cCcE--
Confidence 000012233456776655432 2 3444443222567865321 0 0 0011
Q ss_pred ccCCcEEEEecCCEEEEEeCCCCcE
Q 015251 356 LEKGEILLEYKSRVLVSYDPKRRTF 380 (410)
Q Consensus 356 ~~~g~il~~~~~~~l~~yd~~~~~~ 380 (410)
..++.|++...+++++.+|.++++.
T Consensus 292 ~~~~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 292 VDGGRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred EECCEEEEEcCCCeEEEEECCCCcE
Confidence 1245566666667788888877764
No 71
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=64.13 E-value=1.3e+02 Score=28.48 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=66.0
Q ss_pred cceEE--CCeEEEEecCCCCCCCceEEEEEcCCceeeEE---cCCCCCC--CC--CcceEEEEe---CCeEEEEEe----
Q 015251 233 SEALV--KGRLHWVTRPRRYSPVRGIVSFDIADEQFREV---PKPDCGG--LN--RCNYHLTVL---SGCLSVAVY---- 296 (410)
Q Consensus 233 ~~v~~--~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i---~lP~~~~--~~--~~~~~l~~~---~G~L~~~~~---- 296 (410)
.+++. +|.+||++.. +.|...|++.++-... ++-...+ .. .....+..+ .|+|+++-.
T Consensus 188 ~~~~~~~~~~~~F~Sy~------G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~ 261 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYE------GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGE 261 (342)
T ss_dssp --EEETTTTEEEEEBTT------SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--T
T ss_pred ccceECCCCeEEEEecC------CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCC
Confidence 34444 3689999987 8999999988764332 2211000 01 122345555 467776542
Q ss_pred --CCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCc-EEEE-e-cCCEEE
Q 015251 297 --GNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE-ILLE-Y-KSRVLV 371 (410)
Q Consensus 297 --~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-il~~-~-~~~~l~ 371 (410)
++...=+||+++-.. =.+..+|++. .....++++.+.+ +|+. . +++.|+
T Consensus 262 gsHKdpgteVWv~D~~t----~krv~Ri~l~----------------------~~~~Si~Vsqd~~P~L~~~~~~~~~l~ 315 (342)
T PF06433_consen 262 GSHKDPGTEVWVYDLKT----HKRVARIPLE----------------------HPIDSIAVSQDDKPLLYALSAGDGTLD 315 (342)
T ss_dssp T-TTS-EEEEEEEETTT----TEEEEEEEEE----------------------EEESEEEEESSSS-EEEEEETTTTEEE
T ss_pred CCccCCceEEEEEECCC----CeEEEEEeCC----------------------CccceEEEccCCCcEEEEEcCCCCeEE
Confidence 235678999998522 2345566551 0233467776665 5543 3 457899
Q ss_pred EEeCCCCcEEE
Q 015251 372 SYDPKRRTFNE 382 (410)
Q Consensus 372 ~yd~~~~~~~~ 382 (410)
.||..|++..+
T Consensus 316 v~D~~tGk~~~ 326 (342)
T PF06433_consen 316 VYDAATGKLVR 326 (342)
T ss_dssp EEETTT--EEE
T ss_pred EEeCcCCcEEe
Confidence 99999997654
No 72
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=62.89 E-value=91 Score=31.12 Aligned_cols=89 Identities=16% Similarity=0.212 Sum_probs=49.9
Q ss_pred ceEEEEcccccceeeCCCC-CCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCC-
Q 015251 139 DAICIYNPFTRDYIELPKS-MQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSP- 216 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~LP~~-~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~- 216 (410)
+++.|+|-+|+||.. |.. -..+.....+||.+|. -++++++..-. -| .+.-+.|.+...
T Consensus 57 DELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdG----trilvFGGMvE---YG-----------kYsNdLYELQasR 117 (830)
T KOG4152|consen 57 DELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDG----TRILVFGGMVE---YG-----------KYSNDLYELQASR 117 (830)
T ss_pred hhhhhhccccceeec-chhcCCCCCchhhcceEecC----ceEEEEccEee---ec-----------cccchHHHhhhhh
Confidence 478999999999974 331 1222224566666664 47777754322 11 245566777766
Q ss_pred -ceeecCC-C-----CceeecCCcceEECCeEEEEec
Q 015251 217 -AWRSKGK-L-----AYQFVRRPSEALVKGRLHWVTR 246 (410)
Q Consensus 217 -~Wr~~~~-~-----p~~~~~~~~~v~~~G~lyw~~~ 246 (410)
.|+.+.. . |..+....+-+..+.+.|.+..
T Consensus 118 WeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGG 154 (830)
T KOG4152|consen 118 WEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGG 154 (830)
T ss_pred hhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEecc
Confidence 5666541 1 2222223334456678888754
No 73
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=61.08 E-value=1.4e+02 Score=27.80 Aligned_cols=147 Identities=7% Similarity=0.022 Sum_probs=70.2
Q ss_pred ceEEEEEeC-CCceeecCCCCceeecCCcceEE--CCeEEEEecCCCCCCCceEEEEEcCCc-ee-eEEc-CCCCCCCCC
Q 015251 206 SDVQVYTVG-SPAWRSKGKLAYQFVRRPSEALV--KGRLHWVTRPRRYSPVRGIVSFDIADE-QF-REVP-KPDCGGLNR 279 (410)
Q Consensus 206 ~~~~Vyss~-t~~Wr~~~~~p~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~Il~fDl~~e-~~-~~i~-lP~~~~~~~ 279 (410)
..+.+|+.. ++++..+...+.. .....+.+ +|...+.+.. ..+.|.+||+.+. .. ..+. ++... ..
T Consensus 57 ~~i~~~~~~~~g~l~~~~~~~~~--~~p~~i~~~~~g~~l~v~~~----~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~ 128 (330)
T PRK11028 57 FRVLSYRIADDGALTFAAESPLP--GSPTHISTDHQGRFLFSASY----NANCVSVSPLDKDGIPVAPIQIIEGLE--GC 128 (330)
T ss_pred CcEEEEEECCCCceEEeeeecCC--CCceEEEECCCCCEEEEEEc----CCCeEEEEEECCCCCCCCceeeccCCC--cc
Confidence 456677775 4567654422211 11122333 4654444432 2478899998632 11 1221 11100 00
Q ss_pred cceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeE--EEeccCcCcccccccCCcchhhcccCCCceeEEEEEcc
Q 015251 280 CNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKE--LNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILE 357 (410)
Q Consensus 280 ~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~--~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (410)
......-+|+..++.......+.||-++..+ .-... ..+.. +.+ ..-+-+.+..
T Consensus 129 -~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g---~l~~~~~~~~~~--~~g------------------~~p~~~~~~p 184 (330)
T PRK11028 129 -HSANIDPDNRTLWVPCLKEDRIRLFTLSDDG---HLVAQEPAEVTT--VEG------------------AGPRHMVFHP 184 (330)
T ss_pred -cEeEeCCCCCEEEEeeCCCCEEEEEEECCCC---cccccCCCceec--CCC------------------CCCceEEECC
Confidence 1112233566655554456789999887522 11110 11111 111 0112346677
Q ss_pred CCcEEEEec--CCEEEEEeCC--CCcEEEEE
Q 015251 358 KGEILLEYK--SRVLVSYDPK--RRTFNEFV 384 (410)
Q Consensus 358 ~g~il~~~~--~~~l~~yd~~--~~~~~~v~ 384 (410)
+|+.++..+ +..+..||.+ +++++.+.
T Consensus 185 dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 185 NQQYAYCVNELNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred CCCEEEEEecCCCEEEEEEEeCCCCCEEEEE
Confidence 888776543 5678888876 45665544
No 74
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=59.52 E-value=2.1e+02 Score=29.18 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=43.5
Q ss_pred CcceEECCeEEEEecCCCCCCCceEEEEEcCCc--eeeEE-cCCCCCCC----CCcceEEEEeCCeEEEEEeCCCCeEEE
Q 015251 232 PSEALVKGRLHWVTRPRRYSPVRGIVSFDIADE--QFREV-PKPDCGGL----NRCNYHLTVLSGCLSVAVYGNYGKLEI 304 (410)
Q Consensus 232 ~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e--~~~~i-~lP~~~~~----~~~~~~l~~~~G~L~~~~~~~~~~l~I 304 (410)
+.+++.+|.+|..... ..|.++|..+. .|+.- ..|..... ......++..+|++++.... =.+
T Consensus 63 stPvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~d----g~l 132 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLD----ARL 132 (527)
T ss_pred cCCEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCC----CEE
Confidence 4567899999987655 68999999864 46542 33321100 00112244556666554321 245
Q ss_pred EEEeeCCCCCceeeE
Q 015251 305 WVMKDYNVKESWAKE 319 (410)
Q Consensus 305 W~l~~~~~~~~W~~~ 319 (410)
..|+..-.+..|...
T Consensus 133 ~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 133 VALDAKTGKVVWSKK 147 (527)
T ss_pred EEEECCCCCEEeecc
Confidence 666643236778764
No 75
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=58.78 E-value=21 Score=21.47 Aligned_cols=26 Identities=12% Similarity=-0.017 Sum_probs=19.5
Q ss_pred cEEEEecCCEEEEEeCCCCcEEEEEE
Q 015251 360 EILLEYKSRVLVSYDPKRRTFNEFVF 385 (410)
Q Consensus 360 ~il~~~~~~~l~~yd~~~~~~~~v~~ 385 (410)
.+++...++.++++|.+|++...-.-
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 35555667889999999999876543
No 76
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=57.55 E-value=25 Score=26.15 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=15.2
Q ss_pred CCEEEEEeCCCCcEEEEE
Q 015251 367 SRVLVSYDPKRRTFNEFV 384 (410)
Q Consensus 367 ~~~l~~yd~~~~~~~~v~ 384 (410)
.++|+.||+.|++.+.+.
T Consensus 36 ~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 36 TGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp -EEEEEEETTTTEEEEEE
T ss_pred CcCEEEEECCCCeEEEeh
Confidence 478999999999998765
No 77
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=56.43 E-value=1.6e+02 Score=26.88 Aligned_cols=106 Identities=17% Similarity=0.121 Sum_probs=62.0
Q ss_pred ECCeEEEEecCCCCCCCceEEEEEcCCcee-eEEcCCCCCCCCCcceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCc
Q 015251 237 VKGRLHWVTRPRRYSPVRGIVSFDIADEQF-REVPKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKES 315 (410)
Q Consensus 237 ~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~ 315 (410)
-+|.||=-+.. .+...|..+|+.+++. ...++|+.. +..-++.++++|..+... ....=++-.+ .
T Consensus 54 ~~g~LyESTG~---yG~S~l~~~d~~tg~~~~~~~l~~~~----FgEGit~~~d~l~qLTWk-~~~~f~yd~~------t 119 (264)
T PF05096_consen 54 DDGTLYESTGL---YGQSSLRKVDLETGKVLQSVPLPPRY----FGEGITILGDKLYQLTWK-EGTGFVYDPN------T 119 (264)
T ss_dssp ETTEEEEEECS---TTEEEEEEEETTTSSEEEEEE-TTT------EEEEEEETTEEEEEESS-SSEEEEEETT------T
T ss_pred CCCEEEEeCCC---CCcEEEEEEECCCCcEEEEEECCccc----cceeEEEECCEEEEEEec-CCeEEEEccc------c
Confidence 46788876655 3456899999999876 567998732 344578889999988765 3333333322 2
Q ss_pred eeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCC-cEEEEecCCEEEEEeCCCCcE
Q 015251 316 WAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKG-EILLEYKSRVLVSYDPKRRTF 380 (410)
Q Consensus 316 W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~il~~~~~~~l~~yd~~~~~~ 380 (410)
..+..++... ..-| +.+.+| .+++..++.+|...|+++-+.
T Consensus 120 l~~~~~~~y~------------~EGW------------GLt~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 120 LKKIGTFPYP------------GEGW------------GLTSDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp TEEEEEEE-S------------SS--------------EEEECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred ceEEEEEecC------------Ccce------------EEEcCCCEEEEECCccceEEECCcccce
Confidence 3444444331 1234 333455 466667778899999987544
No 78
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=56.25 E-value=7.8 Score=36.26 Aligned_cols=39 Identities=26% Similarity=0.493 Sum_probs=33.4
Q ss_pred CCCCCCcHHHHHHHHccCC--------cccccceecccHhhHhhhCC
Q 015251 23 TGMETLPREIVLHILLRLP--------ITSLVQFKFVCRAWRALAQD 61 (410)
Q Consensus 23 ~~~~~LP~Dll~eIL~rLP--------~~sl~r~r~VcK~W~~li~s 61 (410)
..++.||.++|.+|+.|.. -+++..|..|||.|+....+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 4678999999999999885 34688999999999998765
No 79
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=54.99 E-value=1.7e+02 Score=29.33 Aligned_cols=127 Identities=8% Similarity=0.038 Sum_probs=74.0
Q ss_pred EEE-eCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCceeecC--CCCceeecCCcceEECCeEEEEe
Q 015251 169 FGF-HPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRSKG--KLAYQFVRRPSEALVKGRLHWVT 245 (410)
Q Consensus 169 l~~-d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr~~~--~~p~~~~~~~~~v~~~G~lyw~~ 245 (410)
..| ...++.-|.|..+..... ....+...+++|-+|.+.. ..+..+....+++.++.++|.+.
T Consensus 206 ViY~eKDs~~skmvvyGGM~G~--------------RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfG 271 (830)
T KOG4152|consen 206 VIYTEKDSKKSKMVVYGGMSGC--------------RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFG 271 (830)
T ss_pred EEEEeccCCcceEEEEcccccc--------------cccceeEEecceeecccccccCCCCCCcccccceeecceeEEec
Confidence 344 445667788777554321 1246778889999998764 22222233456778899999765
Q ss_pred cC------C----CC----CCCceEEEEEcCCceeeEEcCCCCCCC----CCcceEEEEeCCeEEEEEeCC---------
Q 015251 246 RP------R----RY----SPVRGIVSFDIADEQFREVPKPDCGGL----NRCNYHLTVLSGCLSVAVYGN--------- 298 (410)
Q Consensus 246 ~~------~----~~----~~~~~Il~fDl~~e~~~~i~lP~~~~~----~~~~~~l~~~~G~L~~~~~~~--------- 298 (410)
.- . .. .....+-++|+++..|..+-+-..... .....+.+..+.+|++....+
T Consensus 272 GWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYrKAwnnQ 351 (830)
T KOG4152|consen 272 GWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYRKAWNNQ 351 (830)
T ss_pred ceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhhHhhccc
Confidence 32 0 00 123568899999999987754321110 012234567777887775431
Q ss_pred CCeEEEEEEee
Q 015251 299 YGKLEIWVMKD 309 (410)
Q Consensus 299 ~~~l~IW~l~~ 309 (410)
...-|+|-|+.
T Consensus 352 VCCkDlWyLdT 362 (830)
T KOG4152|consen 352 VCCKDLWYLDT 362 (830)
T ss_pred cchhhhhhhcc
Confidence 12456777663
No 80
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=52.60 E-value=1.8e+02 Score=26.33 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=32.1
Q ss_pred CCcceEECCeEEEEecCCCCCCCceEEEEEcCCceee-EEcCCCC
Q 015251 231 RPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFR-EVPKPDC 274 (410)
Q Consensus 231 ~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~-~i~lP~~ 274 (410)
.+..|+-||.||.-... ...|+.||+.++.-. ...||..
T Consensus 71 GtG~vVYngslYY~~~~-----s~~IvkydL~t~~v~~~~~L~~A 110 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYN-----SRNIVKYDLTTRSVVARRELPGA 110 (250)
T ss_pred cCCeEEECCcEEEEecC-----CceEEEEECcCCcEEEEEECCcc
Confidence 34567789999999875 589999999999987 7788853
No 81
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=49.39 E-value=1.9e+02 Score=25.64 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=27.0
Q ss_pred CCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCC
Q 015251 238 KGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPD 273 (410)
Q Consensus 238 ~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~ 273 (410)
+|.|||.... ...|..+|+.+.+...+.+|.
T Consensus 11 ~g~l~~~D~~-----~~~i~~~~~~~~~~~~~~~~~ 41 (246)
T PF08450_consen 11 DGRLYWVDIP-----GGRIYRVDPDTGEVEVIDLPG 41 (246)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEESSS
T ss_pred CCEEEEEEcC-----CCEEEEEECCCCeEEEEecCC
Confidence 6999999865 479999999999998888875
No 82
>PRK05137 tolB translocation protein TolB; Provisional
Probab=48.97 E-value=2.7e+02 Score=27.33 Aligned_cols=140 Identities=12% Similarity=0.041 Sum_probs=66.7
Q ss_pred CceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCc
Q 015251 138 NDAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPA 217 (410)
Q Consensus 138 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~ 217 (410)
...++++|+.|++...|...+. ...+..+.|.. ..-++... .. + ...+.+++..++.
T Consensus 225 ~~~i~~~dl~~g~~~~l~~~~g-----~~~~~~~SPDG-~~la~~~~--~~----g-----------~~~Iy~~d~~~~~ 281 (435)
T PRK05137 225 RPRVYLLDLETGQRELVGNFPG-----MTFAPRFSPDG-RKVVMSLS--QG----G-----------NTDIYTMDLRSGT 281 (435)
T ss_pred CCEEEEEECCCCcEEEeecCCC-----cccCcEECCCC-CEEEEEEe--cC----C-----------CceEEEEECCCCc
Confidence 3579999999998877754321 12233454432 22222221 11 1 2567777888877
Q ss_pred eeecCCCCceeecCCcceEECCe-EEEEecCCCCCCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEeCCeEEEEEe
Q 015251 218 WRSKGKLAYQFVRRPSEALVKGR-LHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVLSGCLSVAVY 296 (410)
Q Consensus 218 Wr~~~~~p~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~~G~L~~~~~ 296 (410)
-+.+...+.. .......-+|. +++.... .....|..+|+.+.+.+.+...... ..... ..-+|+..++..
T Consensus 282 ~~~Lt~~~~~--~~~~~~spDG~~i~f~s~~---~g~~~Iy~~d~~g~~~~~lt~~~~~---~~~~~-~SpdG~~ia~~~ 352 (435)
T PRK05137 282 TTRLTDSPAI--DTSPSYSPDGSQIVFESDR---SGSPQLYVMNADGSNPRRISFGGGR---YSTPV-WSPRGDLIAFTK 352 (435)
T ss_pred eEEccCCCCc--cCceeEcCCCCEEEEEECC---CCCCeEEEEECCCCCeEEeecCCCc---ccCeE-ECCCCCEEEEEE
Confidence 6665432211 01111122443 4443322 1234788889888776665422110 01111 223454333332
Q ss_pred CCCCeEEEEEEee
Q 015251 297 GNYGKLEIWVMKD 309 (410)
Q Consensus 297 ~~~~~l~IW~l~~ 309 (410)
.......||+++-
T Consensus 353 ~~~~~~~i~~~d~ 365 (435)
T PRK05137 353 QGGGQFSIGVMKP 365 (435)
T ss_pred cCCCceEEEEEEC
Confidence 2234467777764
No 83
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=48.06 E-value=55 Score=25.50 Aligned_cols=42 Identities=10% Similarity=0.248 Sum_probs=30.1
Q ss_pred ceEEEEcccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEE
Q 015251 139 DAICIYNPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKI 183 (410)
Q Consensus 139 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~ 183 (410)
-.+.+.||.|+.|..+-+.+ .....+.+.+++..+.|+|+..
T Consensus 9 A~Vm~~d~~tk~W~P~~~~~---~~ls~V~~~~~~~~~~yrIvg~ 50 (111)
T cd01207 9 ASVMVYDDSNKKWVPAGGGS---QGFSRVQIYHHPRNNTFRVVGR 50 (111)
T ss_pred EEeeEEcCCCCcEEcCCCCC---CCcceEEEEEcCCCCEEEEEEe
Confidence 36888999999976432211 1245677888998899999885
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.92 E-value=3.2e+02 Score=27.03 Aligned_cols=179 Identities=14% Similarity=0.149 Sum_probs=96.0
Q ss_pred cccccceeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCCceee-cCC
Q 015251 145 NPFTRDYIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSPAWRS-KGK 223 (410)
Q Consensus 145 NP~T~~~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~~Wr~-~~~ 223 (410)
+|-++.|.+.--++.......+..+.|.|... |.++... ..++.+|++.+.+=+. +..
T Consensus 8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp~~P-~d~aVt~--------------------S~rvqly~~~~~~~~k~~sr 66 (487)
T KOG0310|consen 8 TPEIRYWRQETFPPVHKEHNSVSSLCFSPKHP-YDFAVTS--------------------SVRVQLYSSVTRSVRKTFSR 66 (487)
T ss_pred CccchhhhhhcccccccccCcceeEecCCCCC-CceEEec--------------------ccEEEEEecchhhhhhhHHh
Confidence 56667776654333222224566778877653 3333321 2789999999875443 322
Q ss_pred CCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCcee-eEE---cCCCCCCCCCcceEEEEeCCeEEEEEeCCC
Q 015251 224 LAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQF-REV---PKPDCGGLNRCNYHLTVLSGCLSVAVYGNY 299 (410)
Q Consensus 224 ~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~-~~i---~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~ 299 (410)
+..... +..+..+|.|...+.. .+.|-.||+.+... +.+ ..|.. ......-++.+.+.+ .++
T Consensus 67 Fk~~v~--s~~fR~DG~LlaaGD~-----sG~V~vfD~k~r~iLR~~~ah~apv~------~~~f~~~d~t~l~s~-sDd 132 (487)
T KOG0310|consen 67 FKDVVY--SVDFRSDGRLLAAGDE-----SGHVKVFDMKSRVILRQLYAHQAPVH------VTKFSPQDNTMLVSG-SDD 132 (487)
T ss_pred hcccee--EEEeecCCeEEEccCC-----cCcEEEeccccHHHHHHHhhccCcee------EEEecccCCeEEEec-CCC
Confidence 222111 1223456999888766 58899999766322 222 22321 111222334443333 346
Q ss_pred CeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEc-cCCcEEEEec-CCEEEEEeCCC
Q 015251 300 GKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCIL-EKGEILLEYK-SRVLVSYDPKR 377 (410)
Q Consensus 300 ~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~il~~~~-~~~l~~yd~~~ 377 (410)
....+|.+... . + +..+.- ..++++-..+. .++.+++.-+ ++.+-.||.++
T Consensus 133 ~v~k~~d~s~a---~--v-~~~l~~---------------------htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 133 KVVKYWDLSTA---Y--V-QAELSG---------------------HTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred ceEEEEEcCCc---E--E-EEEecC---------------------CcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 78999998752 2 2 333332 11356655553 3455666533 56788999998
Q ss_pred CcEEEEEE
Q 015251 378 RTFNEFVF 385 (410)
Q Consensus 378 ~~~~~v~~ 385 (410)
..-+.+.+
T Consensus 186 ~~~~v~el 193 (487)
T KOG0310|consen 186 LTSRVVEL 193 (487)
T ss_pred CCceeEEe
Confidence 87333333
No 85
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=44.11 E-value=62 Score=25.65 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=31.9
Q ss_pred CCcEEEEe-----cCCEEEEEeCCCCcEEEEEEe--C--CCCeEEEEEeecCcccC
Q 015251 358 KGEILLEY-----KSRVLVSYDPKRRTFNEFVFK--G--TPNWFQTIVHQGSFNWI 404 (410)
Q Consensus 358 ~g~il~~~-----~~~~l~~yd~~~~~~~~v~~~--~--~~~~~~~~~y~~slv~~ 404 (410)
||-+.+.. ....+++||+++.+|+.+..+ . .......+.|..+|.-+
T Consensus 5 nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v 60 (129)
T PF08268_consen 5 NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALV 60 (129)
T ss_pred CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEE
Confidence 45555442 236799999999999999985 2 22344567788877554
No 86
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=42.60 E-value=3e+02 Score=26.08 Aligned_cols=152 Identities=11% Similarity=0.086 Sum_probs=75.1
Q ss_pred ceEEEEEeCCCceeecCCCCceeecCCcce-E-ECCe-EEEEecCCCCCCCceEEEEEcC--CceeeEE----cCCCCCC
Q 015251 206 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEA-L-VKGR-LHWVTRPRRYSPVRGIVSFDIA--DEQFREV----PKPDCGG 276 (410)
Q Consensus 206 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v-~-~~G~-lyw~~~~~~~~~~~~Il~fDl~--~e~~~~i----~lP~~~~ 276 (410)
.++.+|+..++.=..........-.....+ + -||. .|.++.- ...|.++... ..++..+ .+|....
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL-----~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~ 241 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNEL-----NSTVDVLEYNPAVGKFEELQTIDTLPEDFT 241 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEecc-----CCEEEEEEEcCCCceEEEeeeeccCccccC
Confidence 688899999775544321100000111122 2 2454 4555543 2455555554 4788776 3565322
Q ss_pred CCCcceEE-EEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEE
Q 015251 277 LNRCNYHL-TVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCI 355 (410)
Q Consensus 277 ~~~~~~~l-~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (410)
.......+ +.-+|+..+++..-...|-+...++.+.+.+-..........|+++ .+
T Consensus 242 g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F-----------------------~i 298 (346)
T COG2706 242 GTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDF-----------------------NI 298 (346)
T ss_pred CCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccc-----------------------ee
Confidence 11122222 3346776666544344566666666543322222222222233322 24
Q ss_pred ccCCcEEEEec--CC--EEEEEeCCCCcEEEEEE
Q 015251 356 LEKGEILLEYK--SR--VLVSYDPKRRTFNEFVF 385 (410)
Q Consensus 356 ~~~g~il~~~~--~~--~l~~yd~~~~~~~~v~~ 385 (410)
..+|++++..+ +. .++.-|.+|+++..+..
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 45677766532 22 46677888998887654
No 87
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=40.44 E-value=5e+02 Score=27.93 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=25.2
Q ss_pred CCcceEECCeEEEEecCCCCCCCceEEEEEcCCc--eeeE
Q 015251 231 RPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADE--QFRE 268 (410)
Q Consensus 231 ~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e--~~~~ 268 (410)
...++.++|.+|..+.. +.|+++|.++. .|+.
T Consensus 187 e~TPlvvgg~lYv~t~~------~~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPH------NKVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCC------CeEEEEECCCCcEEEEE
Confidence 45678999999998765 78999999864 5654
No 88
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=40.25 E-value=4.2e+02 Score=27.00 Aligned_cols=67 Identities=12% Similarity=0.242 Sum_probs=39.2
Q ss_pred ceEEEEEeCCC--ceeecC-CCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCce--eeEEcCC
Q 015251 206 SDVQVYTVGSP--AWRSKG-KLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ--FREVPKP 272 (410)
Q Consensus 206 ~~~~Vyss~t~--~Wr~~~-~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~--~~~i~lP 272 (410)
..+..++..|+ .|+.-. .........+.++..+|.+|.-.........+.|.+||.++.+ |+.-..|
T Consensus 130 g~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 130 ARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred CEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence 35666677676 687542 2221222345678889998876543111224689999998764 5433333
No 89
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=37.33 E-value=2.9e+02 Score=29.37 Aligned_cols=66 Identities=20% Similarity=0.426 Sum_probs=44.7
Q ss_pred eCCCCeEEEEEEeeC----CCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEecCCEEE
Q 015251 296 YGNYGKLEIWVMKDY----NVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEYKSRVLV 371 (410)
Q Consensus 296 ~~~~~~l~IW~l~~~----~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~~~~~l~ 371 (410)
...+..+.||++.+. .....|+... |... + .......++.+||.++...-++.|.
T Consensus 475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~-i~sy--~------------------k~~i~a~~fs~dGslla~s~~~~It 533 (792)
T KOG1963|consen 475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKA-IGSY--H------------------KTPITALCFSQDGSLLAVSFDDTIT 533 (792)
T ss_pred eccCCeEEEEEEecccccCcCccceEEee-eecc--c------------------cCcccchhhcCCCcEEEEecCCEEE
Confidence 335778999999653 2245798865 3321 0 0134456778899999988888899
Q ss_pred EEeCCC-CcEEE
Q 015251 372 SYDPKR-RTFNE 382 (410)
Q Consensus 372 ~yd~~~-~~~~~ 382 (410)
.||..+ .+++.
T Consensus 534 iwd~~~~~~l~~ 545 (792)
T KOG1963|consen 534 IWDYDTKNELLC 545 (792)
T ss_pred EecCCChhhhhc
Confidence 999999 44443
No 90
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=36.57 E-value=5.5e+02 Score=27.27 Aligned_cols=77 Identities=12% Similarity=0.193 Sum_probs=46.4
Q ss_pred CcceEECCeEEEEecCCC------CCCCceEEEEEcCCceeeEEcCCCCCC-----CCCcceEEEEeC--CeEEEEEeCC
Q 015251 232 PSEALVKGRLHWVTRPRR------YSPVRGIVSFDIADEQFREVPKPDCGG-----LNRCNYHLTVLS--GCLSVAVYGN 298 (410)
Q Consensus 232 ~~~v~~~G~lyw~~~~~~------~~~~~~Il~fDl~~e~~~~i~lP~~~~-----~~~~~~~l~~~~--G~L~~~~~~~ 298 (410)
....+..+..||+..... -.....+++-+++++.|....+|.... .......-+.++ |--..+....
T Consensus 249 ~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k 328 (893)
T KOG0291|consen 249 HKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK 328 (893)
T ss_pred cceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc
Confidence 345777888888885521 123457999999999999999997432 222222223333 4322222223
Q ss_pred CCeEEEEEEe
Q 015251 299 YGKLEIWVMK 308 (410)
Q Consensus 299 ~~~l~IW~l~ 308 (410)
-..+-||..+
T Consensus 329 lgQLlVweWq 338 (893)
T KOG0291|consen 329 LGQLLVWEWQ 338 (893)
T ss_pred cceEEEEEee
Confidence 4578888876
No 91
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=32.40 E-value=2.8e+02 Score=26.08 Aligned_cols=85 Identities=9% Similarity=0.205 Sum_probs=45.9
Q ss_pred cCCcceEE-CCeEEEEecCCCC-CC-CceEEEEEcC-CceeeEE-cCCCCCCCCCcceEEEEe-CCeEEEEEeCCCCeEE
Q 015251 230 RRPSEALV-KGRLHWVTRPRRY-SP-VRGIVSFDIA-DEQFREV-PKPDCGGLNRCNYHLTVL-SGCLSVAVYGNYGKLE 303 (410)
Q Consensus 230 ~~~~~v~~-~G~lyw~~~~~~~-~~-~~~Il~fDl~-~e~~~~i-~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~~~~l~ 303 (410)
...++|.. ||.|-+...-... .. .-.++.|... ..+|..= -.|+ ..+..+++++. +|+|.|+..++...-.
T Consensus 122 gGGSGV~m~dGTLVFPv~a~~~~~~~~~SlIiYS~d~g~~W~lskg~s~---~gC~~psv~EWe~gkLlM~~~c~~g~rr 198 (310)
T PF13859_consen 122 GGGSGVVMEDGTLVFPVQATKKNGDGTVSLIIYSTDDGKTWKLSKGMSP---AGCSDPSVVEWEDGKLLMMTACDDGRRR 198 (310)
T ss_dssp -SEE-EE-TTS-EEEEEEEEETT---EEEEEEEESSTTSS-EE-S-------TT-EEEEEEEE-TTEEEEEEE-TTS---
T ss_pred CCCCceEEcCCCEEEEEeeeccCccceEEEEEEECCCccceEeccccCC---CCcceEEEEeccCCeeEEEEecccceEE
Confidence 45566766 8888886654212 22 2567777776 5677643 2222 23457889999 8999999988666567
Q ss_pred EEEEeeCCCCCceeeE
Q 015251 304 IWVMKDYNVKESWAKE 319 (410)
Q Consensus 304 IW~l~~~~~~~~W~~~ 319 (410)
|..-.|-| ..|+..
T Consensus 199 VYeS~DmG--~tWtea 212 (310)
T PF13859_consen 199 VYESGDMG--TTWTEA 212 (310)
T ss_dssp EEEESSTT--SS-EE-
T ss_pred EEEEcccc--eehhhc
Confidence 77666644 679973
No 92
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.73 E-value=84 Score=29.86 Aligned_cols=64 Identities=9% Similarity=0.159 Sum_probs=46.5
Q ss_pred eEEEEEeCC--CceeecCCCCceeecCCcceEECCeEEEEecCCCCC-----CCceEEEEEcCCceeeEEc
Q 015251 207 DVQVYTVGS--PAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYS-----PVRGIVSFDIADEQFREVP 270 (410)
Q Consensus 207 ~~~Vyss~t--~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~-----~~~~Il~fDl~~e~~~~i~ 270 (410)
...+.++.. ..|..+...|-........+.++|.||.+....... .-+.+..||..+++|..++
T Consensus 59 afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~ 129 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLD 129 (381)
T ss_pred cceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheec
Confidence 344445554 379999988876666667789999999998652211 2257899999999999873
No 93
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=31.32 E-value=4.4e+02 Score=24.65 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=26.6
Q ss_pred CCeEEEEecCCCCCCCceEEEEEcCCceeeEEcCCCC
Q 015251 238 KGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPKPDC 274 (410)
Q Consensus 238 ~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~lP~~ 274 (410)
.++|||.... ...|..+|..+.+-+.++.|..
T Consensus 36 ~~~L~w~DI~-----~~~i~r~~~~~g~~~~~~~p~~ 67 (307)
T COG3386 36 RGALLWVDIL-----GGRIHRLDPETGKKRVFPSPGG 67 (307)
T ss_pred CCEEEEEeCC-----CCeEEEecCCcCceEEEECCCC
Confidence 3578999866 5799999999999999988863
No 94
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=30.69 E-value=1.8e+02 Score=26.90 Aligned_cols=62 Identities=13% Similarity=0.296 Sum_probs=43.5
Q ss_pred CceEEEEEeCCCceeecCCC-Cce---ee-cCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEEcC
Q 015251 205 RSDVQVYTVGSPAWRSKGKL-AYQ---FV-RRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREVPK 271 (410)
Q Consensus 205 ~~~~~Vyss~t~~Wr~~~~~-p~~---~~-~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i~l 271 (410)
...+.+|+..+.+|.....- .-. +. ....-+++.|.|..-.. ....+..||+.+.+|..++-
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~-----~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGT-----NSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCC-----CceeEEEEecCCCeeeecCC
Confidence 47899999999999987632 111 11 23456777776664432 24789999999999987754
No 95
>PF15408 PH_7: Pleckstrin homology domain
Probab=30.49 E-value=18 Score=26.42 Aligned_cols=25 Identities=20% Similarity=0.517 Sum_probs=20.4
Q ss_pred cccccceecccHhhHhhhCChhhhh
Q 015251 42 ITSLVQFKFVCRAWRALAQDPLLAN 66 (410)
Q Consensus 42 ~~sl~r~r~VcK~W~~li~s~~F~~ 66 (410)
++.+...+-|||+|-....+|+|.-
T Consensus 76 ~~~FA~S~~~~~~Wi~~mN~~s~~~ 100 (104)
T PF15408_consen 76 VQCFASSKKVCQSWIQVMNSPSFRV 100 (104)
T ss_pred hhhhhhHHHHHHHHHHHhcChhhhh
Confidence 4556677889999999999998843
No 96
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=29.63 E-value=4.3e+02 Score=24.00 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=69.0
Q ss_pred ceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeE-E-cC---CCCCCCCCc
Q 015251 206 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFRE-V-PK---PDCGGLNRC 280 (410)
Q Consensus 206 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~-i-~l---P~~~~~~~~ 280 (410)
..+.|.++++++-....-+.......+-.|.-+|.+---... .+..++.++-+..+.. + |+ +..... .
T Consensus 146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn-----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~--i 218 (311)
T KOG0315|consen 146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN-----KGNCYVWRLLNHQTASELEPVHKFQAHNGH--I 218 (311)
T ss_pred CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC-----CccEEEEEccCCCccccceEhhheecccce--E
Confidence 356666666664433211111111223345556655443333 3667777776654422 2 22 221110 1
Q ss_pred ceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCc
Q 015251 281 NYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGE 360 (410)
Q Consensus 281 ~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 360 (410)
-..+..-+++....+. .+.++.||..++. -.....+.. .. .++---+|..||+
T Consensus 219 l~C~lSPd~k~lat~s-sdktv~iwn~~~~-----~kle~~l~g-----------h~----------rWvWdc~FS~dg~ 271 (311)
T KOG0315|consen 219 LRCLLSPDVKYLATCS-SDKTVKIWNTDDF-----FKLELVLTG-----------HQ----------RWVWDCAFSADGE 271 (311)
T ss_pred EEEEECCCCcEEEeec-CCceEEEEecCCc-----eeeEEEeec-----------CC----------ceEEeeeeccCcc
Confidence 1123334555544443 4789999998763 111111111 00 1222335566788
Q ss_pred EEEEec-CCEEEEEeCCCCcEEEE
Q 015251 361 ILLEYK-SRVLVSYDPKRRTFNEF 383 (410)
Q Consensus 361 il~~~~-~~~l~~yd~~~~~~~~v 383 (410)
.++.-. +...-.+|+..++-.+.
T Consensus 272 YlvTassd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 272 YLVTASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred EEEecCCCCceeecccccCceeee
Confidence 877644 44566888888875544
No 97
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=28.78 E-value=4.8e+02 Score=24.21 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=56.2
Q ss_pred CceEEEEEcC--CceeeEE----cCCCCCCCCCcceEE-EEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEecc-
Q 015251 253 VRGIVSFDIA--DEQFREV----PKPDCGGLNRCNYHL-TVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGA- 324 (410)
Q Consensus 253 ~~~Il~fDl~--~e~~~~i----~lP~~~~~~~~~~~l-~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~- 324 (410)
.+.|.+||+. +.++..+ ..|...........+ ..-+|+..++.......+.||.++..+ ..+.....+..
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~--~~~~~~~~~~~~ 273 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG--SVLSFEGHQPTE 273 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC--CeEEEeEEEecc
Confidence 4788888886 3455433 234321111111112 223566555554446789999987643 34555444432
Q ss_pred CcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEe--cCCEEEEEe--CCCCcEEEEE
Q 015251 325 YIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEY--KSRVLVSYD--PKRRTFNEFV 384 (410)
Q Consensus 325 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~--~~~~l~~yd--~~~~~~~~v~ 384 (410)
..| +-+.+..+|+.++.. .++.+..|+ .+++.++.+.
T Consensus 274 ~~p-----------------------~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 274 TQP-----------------------RGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred ccC-----------------------CceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 011 123566678777653 245666664 4677777765
No 98
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=27.47 E-value=6.4e+02 Score=25.27 Aligned_cols=79 Identities=11% Similarity=0.011 Sum_probs=39.4
Q ss_pred eEEC-CeEEEEecCCCCCCCceEEEEEcCCce--eeEEcCCCCCCCCC-cceEEEEeCCeEEEEEeCC-----CCeEEEE
Q 015251 235 ALVK-GRLHWVTRPRRYSPVRGIVSFDIADEQ--FREVPKPDCGGLNR-CNYHLTVLSGCLSVAVYGN-----YGKLEIW 305 (410)
Q Consensus 235 v~~~-G~lyw~~~~~~~~~~~~Il~fDl~~e~--~~~i~lP~~~~~~~-~~~~l~~~~G~L~~~~~~~-----~~~l~IW 305 (410)
++.+ |.+|.-... ..|+++|..+.+ |+. .+........ .....+..+|.+++-.... ...=.++
T Consensus 106 ~~~~~~~V~v~~~~------g~v~AlD~~TG~~~W~~-~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~ 178 (488)
T cd00216 106 AYWDPRKVFFGTFD------GRLVALDAETGKQVWKF-GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALR 178 (488)
T ss_pred EEccCCeEEEecCC------CeEEEEECCCCCEeeee-cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEE
Confidence 3446 888876655 799999997644 543 3322100000 0112233445544322110 0123567
Q ss_pred EEeeCCCCCceeeEE
Q 015251 306 VMKDYNVKESWAKEL 320 (410)
Q Consensus 306 ~l~~~~~~~~W~~~~ 320 (410)
.++..-.+..|....
T Consensus 179 alD~~TG~~~W~~~~ 193 (488)
T cd00216 179 AYDVETGKLLWRFYT 193 (488)
T ss_pred EEECCCCceeeEeec
Confidence 777543367887654
No 99
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=27.40 E-value=38 Score=30.73 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=31.5
Q ss_pred cccCCCCCCCcHHHHHHHHccCC-cccccceecccHhhHhhhCC
Q 015251 19 HQQATGMETLPREIVLHILLRLP-ITSLVQFKFVCRAWRALAQD 61 (410)
Q Consensus 19 ~~~~~~~~~LP~Dll~eIL~rLP-~~sl~r~r~VcK~W~~li~s 61 (410)
..+.....+||.+++.+||.||| -.+|....-|--.-..++.+
T Consensus 196 ~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e 239 (332)
T KOG3926|consen 196 DPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEE 239 (332)
T ss_pred CcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHH
Confidence 34566788999999999999999 66777766665544444443
No 100
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=26.89 E-value=5.5e+02 Score=24.35 Aligned_cols=134 Identities=10% Similarity=0.116 Sum_probs=70.3
Q ss_pred ceEEEEEeCCC--ceeecCCCCce-------eecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCce--eeEEcCCCC
Q 015251 206 SDVQVYTVGSP--AWRSKGKLAYQ-------FVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ--FREVPKPDC 274 (410)
Q Consensus 206 ~~~~Vyss~t~--~Wr~~~~~p~~-------~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~--~~~i~lP~~ 274 (410)
..+..++..++ .|+.-...+.. ......++..+|.+|..... +.+.+||..+.+ |.. +.+.
T Consensus 200 g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~~~W~~-~~~~- 271 (377)
T TIGR03300 200 GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGRVLWKR-DASS- 271 (377)
T ss_pred CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCcEEEee-ccCC-
Confidence 34566666666 58643211110 01123456788999987765 789999997754 432 2221
Q ss_pred CCCCCcceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEE
Q 015251 275 GGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVC 354 (410)
Q Consensus 275 ~~~~~~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (410)
....+..+|.+++.. ....+..+-.++ | +..|.... +.. . ....|+.
T Consensus 272 ------~~~p~~~~~~vyv~~--~~G~l~~~d~~t-G-~~~W~~~~-~~~----~------------------~~ssp~i 318 (377)
T TIGR03300 272 ------YQGPAVDDNRLYVTD--ADGVVVALDRRS-G-SELWKNDE-LKY----R------------------QLTAPAV 318 (377)
T ss_pred ------ccCceEeCCEEEEEC--CCCeEEEEECCC-C-cEEEcccc-ccC----C------------------ccccCEE
Confidence 122344566665543 233444433322 2 45676521 110 0 0011211
Q ss_pred EccCCcEEEEecCCEEEEEeCCCCcEEE
Q 015251 355 ILEKGEILLEYKSRVLVSYDPKRRTFNE 382 (410)
Q Consensus 355 ~~~~g~il~~~~~~~l~~yd~~~~~~~~ 382 (410)
.++.+++...++.++.+|.+++++..
T Consensus 319 --~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 319 --VGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred --ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 24556666677889999998887754
No 101
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=25.71 E-value=6.1e+02 Score=24.46 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=74.6
Q ss_pred ceEEEEEeCCC-----ceeecCC-CCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCce---eeEEcCCCCCC
Q 015251 206 SDVQVYTVGSP-----AWRSKGK-LAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQ---FREVPKPDCGG 276 (410)
Q Consensus 206 ~~~~Vyss~t~-----~Wr~~~~-~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~---~~~i~lP~~~~ 276 (410)
..+.+.+..++ .|+.+.. .+... ...-..++.+|.++.. ......|++.|+.+-. |..+-+|....
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~~~~---~~v~~~~~~~yi~Tn~--~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~ 326 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPREDGVE---YYVDHHGDRLYILTND--DAPNGRLVAVDLADPSPAEWWTVLIPEDED 326 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSSS-E---EEEEEETTEEEEEE-T--T-TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCCceE---EEEEccCCEEEEeeCC--CCCCcEEEEecccccccccceeEEcCCCCc
Confidence 45666777664 6776642 11111 1122457888888764 3345789999998765 55433332211
Q ss_pred CCCcceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEE-
Q 015251 277 LNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCI- 355 (410)
Q Consensus 277 ~~~~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 355 (410)
..-..+...++.|.+.... ...-.|.+++-. ..|.... +.+ |.. + .+..+..
T Consensus 327 --~~l~~~~~~~~~Lvl~~~~-~~~~~l~v~~~~---~~~~~~~-~~~--p~~-----------------g-~v~~~~~~ 379 (414)
T PF02897_consen 327 --VSLEDVSLFKDYLVLSYRE-NGSSRLRVYDLD---DGKESRE-IPL--PEA-----------------G-SVSGVSGD 379 (414)
T ss_dssp --EEEEEEEEETTEEEEEEEE-TTEEEEEEEETT----TEEEEE-EES--SSS-----------------S-EEEEEES-
T ss_pred --eeEEEEEEECCEEEEEEEE-CCccEEEEEECC---CCcEEee-ecC--Ccc-----------------e-EEeccCCC
Confidence 1123355567787766543 333344444321 1344433 232 110 0 1111111
Q ss_pred ccCCcEEEEec----CCEEEEEeCCCCcEEEEE
Q 015251 356 LEKGEILLEYK----SRVLVSYDPKRRTFNEFV 384 (410)
Q Consensus 356 ~~~g~il~~~~----~~~l~~yd~~~~~~~~v~ 384 (410)
..+.++.|... ...++.||+++++.+.+.
T Consensus 380 ~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 380 FDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred CCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 23445666543 367999999999998775
No 102
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=25.54 E-value=4.8e+02 Score=23.15 Aligned_cols=120 Identities=12% Similarity=0.068 Sum_probs=61.7
Q ss_pred CCeEEEEecCCCCCCCceEEEEEcCCcee-eEEcCCCC--CCCCCcceEEE-EeCCeEEEEEeCCCCeEEEEEEeeCCCC
Q 015251 238 KGRLHWVTRPRRYSPVRGIVSFDIADEQF-REVPKPDC--GGLNRCNYHLT-VLSGCLSVAVYGNYGKLEIWVMKDYNVK 313 (410)
Q Consensus 238 ~G~lyw~~~~~~~~~~~~Il~fDl~~e~~-~~i~lP~~--~~~~~~~~~l~-~~~G~L~~~~~~~~~~l~IW~l~~~~~~ 313 (410)
+|...++... ..+.|..||+.+.+. ..+..... .........+. .-+|+..++.......+.||-++.
T Consensus 167 dg~~l~~~~~----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~---- 238 (300)
T TIGR03866 167 DGKELWVSSE----IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT---- 238 (300)
T ss_pred CCCEEEEEcC----CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC----
Confidence 5554444432 136789999987654 33432210 00000111122 235655444433345688885532
Q ss_pred CceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEe--cCCEEEEEeCCCCcE-EEEEEeCCC
Q 015251 314 ESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEY--KSRVLVSYDPKRRTF-NEFVFKGTP 389 (410)
Q Consensus 314 ~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~--~~~~l~~yd~~~~~~-~~v~~~~~~ 389 (410)
|.....+... .....+.+..+|+.++.. .++.|..||.++++. +.+.+.+.+
T Consensus 239 --~~~~~~~~~~----------------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 293 (300)
T TIGR03866 239 --YEVLDYLLVG----------------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLP 293 (300)
T ss_pred --CcEEEEEEeC----------------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccccc
Confidence 3333322210 012235677788876653 367899999999985 666654433
No 103
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=25.41 E-value=97 Score=24.58 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=21.8
Q ss_pred EEEEecCCEEEEEeCCCCcEEEEEEeCCCC
Q 015251 361 ILLEYKSRVLVSYDPKRRTFNEFVFKGTPN 390 (410)
Q Consensus 361 il~~~~~~~l~~yd~~~~~~~~v~~~~~~~ 390 (410)
|+.....-.++.||..+++|++..++|...
T Consensus 22 Il~~a~~v~vY~f~~~~~~W~K~~iEG~LF 51 (122)
T PF06058_consen 22 ILDTASHVVVYKFDHETNEWEKTDIEGTLF 51 (122)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEEE
T ss_pred HHhhCCeEEEEeecCCCCcEeecCcEeeEE
Confidence 444444345778889999999999988643
No 104
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=25.28 E-value=5.3e+02 Score=23.58 Aligned_cols=143 Identities=13% Similarity=0.163 Sum_probs=74.8
Q ss_pred CceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCc-eeeEEcCCCCCCCCCcceE
Q 015251 205 RSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADE-QFREVPKPDCGGLNRCNYH 283 (410)
Q Consensus 205 ~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e-~~~~i~lP~~~~~~~~~~~ 283 (410)
...+..|+..+++=.....+|......+ ...+++.+|-+++. .+..+.||..+- .-..++.|. ...-
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l~~~~FgEG-it~~~d~l~qLTWk-----~~~~f~yd~~tl~~~~~~~y~~------EGWG 134 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPLPPRYFGEG-ITILGDKLYQLTWK-----EGTGFVYDPNTLKKIGTFPYPG------EGWG 134 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE-TTT--EEE-EEEETTEEEEEESS-----SSEEEEEETTTTEEEEEEE-SS------S--E
T ss_pred cEEEEEEECCCCcEEEEEECCcccccee-EEEECCEEEEEEec-----CCeEEEEccccceEEEEEecCC------cceE
Confidence 3788899999986544334444433322 24679999999998 578999999862 334455552 1233
Q ss_pred EEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEE
Q 015251 284 LTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILL 363 (410)
Q Consensus 284 l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~ 363 (410)
|+.-+..|.+... +=.++.++. .......+|.... -+.|.. .+--+-.. +|.|+-
T Consensus 135 Lt~dg~~Li~SDG----S~~L~~~dP----~~f~~~~~i~V~~-------~g~pv~---------~LNELE~i-~G~IyA 189 (264)
T PF05096_consen 135 LTSDGKRLIMSDG----SSRLYFLDP----ETFKEVRTIQVTD-------NGRPVS---------NLNELEYI-NGKIYA 189 (264)
T ss_dssp EEECSSCEEEE-S----SSEEEEE-T----TT-SEEEEEE-EE-------TTEE------------EEEEEEE-TTEEEE
T ss_pred EEcCCCEEEEECC----ccceEEECC----cccceEEEEEEEE-------CCEECC---------CcEeEEEE-cCEEEE
Confidence 4444445555432 334555552 2344555555420 011110 11112111 577766
Q ss_pred Ee-cCCEEEEEeCCCCcEEEEE
Q 015251 364 EY-KSRVLVSYDPKRRTFNEFV 384 (410)
Q Consensus 364 ~~-~~~~l~~yd~~~~~~~~v~ 384 (410)
.. ....|+.-|++|+++...-
T Consensus 190 NVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EETTSSEEEEEETTT-BEEEEE
T ss_pred EeCCCCeEEEEeCCCCeEEEEE
Confidence 54 3467888999998887644
No 105
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=25.14 E-value=1.1e+02 Score=21.06 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=13.9
Q ss_pred EEEEEeCCCCcEEEEE
Q 015251 369 VLVSYDPKRRTFNEFV 384 (410)
Q Consensus 369 ~l~~yd~~~~~~~~v~ 384 (410)
+++.||+++++++-+.
T Consensus 42 KIfkyd~~tNei~L~K 57 (63)
T PF14157_consen 42 KIFKYDEDTNEITLKK 57 (63)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCCeEEEEE
Confidence 7999999999998664
No 106
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.34 E-value=2.3e+02 Score=27.09 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=42.2
Q ss_pred CceEEEEEeCCCceeecCCCCceeecCCcceEECCeEEEEe-cC-CCCCC--CceEEEEEcCCceeeEE-cCCCCC
Q 015251 205 RSDVQVYTVGSPAWRSKGKLAYQFVRRPSEALVKGRLHWVT-RP-RRYSP--VRGIVSFDIADEQFREV-PKPDCG 275 (410)
Q Consensus 205 ~~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~-~~-~~~~~--~~~Il~fDl~~e~~~~i-~lP~~~ 275 (410)
...+-+|+..++.|+.....|+.... .+++...|..-++. .. .+.-. .-...-|.-.+.+|..+ ++|...
T Consensus 195 n~ev~sy~p~~n~W~~~G~~pf~~~a-Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~ 269 (381)
T COG3055 195 NKEVLSYDPSTNQWRNLGENPFYGNA-GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPI 269 (381)
T ss_pred cccccccccccchhhhcCcCcccCcc-CcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCC
Confidence 35678899999999999877775532 24445555533433 22 11111 23455566678889877 566543
No 107
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=23.86 E-value=2.9e+02 Score=21.26 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=28.1
Q ss_pred eEEEEcccccc-eeeCCCCCCCCCCceEEEEEEeCCCCCeEEEEE
Q 015251 140 AICIYNPFTRD-YIELPKSMQYPDQEVVFGFGFHPVSKEYKVIKI 183 (410)
Q Consensus 140 ~~~V~NP~T~~-~~~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~ 183 (410)
.++..||-+++ |... .....+.+..|...+.|.+...
T Consensus 17 ~v~~~~p~~~~~W~~~-------~~~g~v~~v~d~~~~~y~I~~~ 54 (111)
T PF00568_consen 17 QVYQADPDTKRQWSPV-------KGTGVVCFVKDNSRRSYFIRLY 54 (111)
T ss_dssp EEEEEETTTSESEEES-------SSEEEEEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCCCCcEeeC-------CeEEEEEEEEECCCCEEEEEEE
Confidence 78899999888 8866 1245677788888888887765
No 108
>smart00284 OLF Olfactomedin-like domains.
Probab=22.75 E-value=5.8e+02 Score=23.18 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=47.3
Q ss_pred CCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEE-cCCCCC---C-----CCCcceEEEEeCCeEEEEEeC--CC
Q 015251 231 RPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREV-PKPDCG---G-----LNRCNYHLTVLSGCLSVAVYG--NY 299 (410)
Q Consensus 231 ~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i-~lP~~~---~-----~~~~~~~l~~~~G~L~~~~~~--~~ 299 (410)
....|+-||.||+-... ...|+.||+.+++.... .||... . .......|++=+.-|-++... +.
T Consensus 76 GtG~VVYngslYY~~~~-----s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~ 150 (255)
T smart00284 76 GTGVVVYNGSLYFNKFN-----SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNA 150 (255)
T ss_pred cccEEEECceEEEEecC-----CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCC
Confidence 34578899999997655 47899999999988543 466321 0 012335566666666666433 23
Q ss_pred CeEEEEEEee
Q 015251 300 GKLEIWVMKD 309 (410)
Q Consensus 300 ~~l~IW~l~~ 309 (410)
..|.|=.|+.
T Consensus 151 g~ivvSkLnp 160 (255)
T smart00284 151 GKIVISKLNP 160 (255)
T ss_pred CCEEEEeeCc
Confidence 5576666664
No 109
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=22.48 E-value=7.4e+02 Score=25.80 Aligned_cols=99 Identities=14% Similarity=0.311 Sum_probs=57.6
Q ss_pred CceEEEEEcCCceeeEE-cCCCCCCCCCcceEEEEe-CC-eEEEEEeCCCCeEEEEEEeeCCCCCceee-EEEeccCcCc
Q 015251 253 VRGIVSFDIADEQFREV-PKPDCGGLNRCNYHLTVL-SG-CLSVAVYGNYGKLEIWVMKDYNVKESWAK-ELNIGAYIPK 328 (410)
Q Consensus 253 ~~~Il~fDl~~e~~~~i-~lP~~~~~~~~~~~l~~~-~G-~L~~~~~~~~~~l~IW~l~~~~~~~~W~~-~~~i~~~~p~ 328 (410)
...+..|++++.++..+ +.-+... ...-..++.. .| .|+++. ....+.+|-|+.- ...|.. ...+.
T Consensus 450 ~~~le~~el~~ps~kel~~~~~~~~-~~~I~~l~~SsdG~yiaa~~--t~g~I~v~nl~~~--~~~~l~~rln~~----- 519 (691)
T KOG2048|consen 450 IFSLEEFELETPSFKELKSIQSQAK-CPSISRLVVSSDGNYIAAIS--TRGQIFVYNLETL--ESHLLKVRLNID----- 519 (691)
T ss_pred cceeEEEEecCcchhhhhccccccC-CCcceeEEEcCCCCEEEEEe--ccceEEEEEcccc--eeecchhccCcc-----
Confidence 35788888888888765 2221100 0111234443 33 566665 3578999999863 345554 22222
Q ss_pred ccccccCCcchhhcccCCCceeEEEEE--ccCCcEEEEecCCEEEEEeCCCCcEEE
Q 015251 329 GLKQSLDRPLKIWKNSLNGRVVRVVCI--LEKGEILLEYKSRVLVSYDPKRRTFNE 382 (410)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~il~~~~~~~l~~yd~~~~~~~~ 382 (410)
+...++ ...+.+++.+.+.+++.||.+.+++.+
T Consensus 520 ---------------------vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ 554 (691)
T KOG2048|consen 520 ---------------------VTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTR 554 (691)
T ss_pred ---------------------eeeeeccccccCcEEEEecCCeEEEEecchhhhhh
Confidence 223333 235678888888999999996666543
No 110
>PF08683 CAMSAP_CKK: Microtubule-binding calmodulin-regulated spectrin-associated; InterPro: IPR014797 This is the C-terminal domain of a family of eumetazoan proteins collectively defined as calmodulin-regulated spectrin-associated, or CAMSAP, proteins. CAMSAP proteins carry an N-terminal region that includes the CH domain, a central region including a predicted coiled-coil and this C-terminal, or CKK, domain - defined as being present in CAMSAP, KIAA1078 and KIAA1543, The C-terminal domain is the part of the CAMSAP proteins that binds to microtubules. The domain appears to act by producing inhibition of neurite extension, probably by blocking microtubule function. CKK represents a domain that has evolved with the metazoa []. The structure of a murine hypothetical protein from RIKEN cDNA has shown the domain to adopt a mainly beta barrel structure with an associated alpha-helical hairpin. ; PDB: 1UGJ_A.
Probab=22.24 E-value=2.6e+02 Score=22.23 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=32.4
Q ss_pred CceEEEeecc-CCceEEEEcccccceeeCCC--CCCCCCCceEEEEEEeCCCCCeEEEE
Q 015251 127 NGLLCLSDSL-FNDAICIYNPFTRDYIELPK--SMQYPDQEVVFGFGFHPVSKEYKVIK 182 (410)
Q Consensus 127 ~Gll~l~~~~-~~~~~~V~NP~T~~~~~LP~--~~~~~~~~~~~~l~~d~~~~~ykvv~ 182 (410)
+=+||+++.. .=..+|.+||.+.+...|=. |...........+-||..+.+|+.|.
T Consensus 49 hflILfrd~~~~fRglY~~~~~~~~~~ki~G~gP~~i~~~mv~~~~KYdSg~K~F~~i~ 107 (123)
T PF08683_consen 49 HFLILFRDAGCQFRGLYSYDPESEELVKIYGTGPRVITPSMVDKFYKYDSGSKQFKPIP 107 (123)
T ss_dssp -EEEEESSSS-SEEEEEEE-TTSS-EEEEESSS-SEE-TTTEEEEEEEETTTTEEEE-S
T ss_pred eEEEEEecCCCceEEEEEEeCCCCeEEEEEccCcCccCHHHHHHHhcccccCceeeecc
Confidence 3355666321 12478999999998887733 33222235566678998888888773
No 111
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=21.98 E-value=6.4e+02 Score=23.36 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=54.5
Q ss_pred ceEEEEEcCCc-----eeeEE---cCCCCCCCCCcceEEEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccC
Q 015251 254 RGIVSFDIADE-----QFREV---PKPDCGGLNRCNYHLTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAY 325 (410)
Q Consensus 254 ~~Il~fDl~~e-----~~~~i---~lP~~~~~~~~~~~l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~ 325 (410)
+.|+.|++.+. ++..+ +.+ .....+..++|+|.+.. ...+.|+.+++. ..+......+..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~------g~V~ai~~~~~~lv~~~---g~~l~v~~l~~~---~~l~~~~~~~~~ 129 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVK------GPVTAICSFNGRLVVAV---GNKLYVYDLDNS---KTLLKKAFYDSP 129 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEES------S-EEEEEEETTEEEEEE---TTEEEEEEEETT---SSEEEEEEE-BS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeec------CcceEhhhhCCEEEEee---cCEEEEEEccCc---ccchhhheecce
Confidence 56666666663 44433 221 11346888899966655 468999999863 247666655441
Q ss_pred cCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEEe--cCCEEEEEeCCCCcEEEEEEeCCCCeE
Q 015251 326 IPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLEY--KSRVLVSYDPKRRTFNEFVFKGTPNWF 392 (410)
Q Consensus 326 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~~--~~~~l~~yd~~~~~~~~v~~~~~~~~~ 392 (410)
+ .+.-+... ++.|++.. .+-.++.|+.+.+++..+.-...+.+.
T Consensus 130 ~----------------------~i~sl~~~-~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v 175 (321)
T PF03178_consen 130 F----------------------YITSLSVF-KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWV 175 (321)
T ss_dssp S----------------------SEEEEEEE-TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEE
T ss_pred E----------------------EEEEEecc-ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccE
Confidence 1 11111122 22333332 223566778777778877755444333
No 112
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.55 E-value=6.8e+02 Score=23.47 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=39.2
Q ss_pred ceEEEEEeCCCceeecCCCCceeecCCcceEE-CCeEEEEecCCCCCCCceEEEEEcCCceeeEE
Q 015251 206 SDVQVYTVGSPAWRSKGKLAYQFVRRPSEALV-KGRLHWVTRPRRYSPVRGIVSFDIADEQFREV 269 (410)
Q Consensus 206 ~~~~Vyss~t~~Wr~~~~~p~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i 269 (410)
..+.||+.++++=...-..+.......-+++. +|.+-+.+..+.....+.|-++|.. +.+..+
T Consensus 28 ~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~~ri 91 (305)
T PF07433_consen 28 TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGYRRI 91 (305)
T ss_pred cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCcEEE
Confidence 57889999988533221223222223334444 6887777777555667899999998 455544
No 113
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=21.32 E-value=6.8e+02 Score=23.44 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=50.1
Q ss_pred CcceEE-CCeEEEEecCCCC--CCCceEEEEEcCCceeeEEcCCCCCCCCCcceEEEEe-CCeEEEEEeCC-CCeEEEEE
Q 015251 232 PSEALV-KGRLHWVTRPRRY--SPVRGIVSFDIADEQFREVPKPDCGGLNRCNYHLTVL-SGCLSVAVYGN-YGKLEIWV 306 (410)
Q Consensus 232 ~~~v~~-~G~lyw~~~~~~~--~~~~~Il~fDl~~e~~~~i~lP~~~~~~~~~~~l~~~-~G~L~~~~~~~-~~~l~IW~ 306 (410)
..++.. +|.+......... .....++..|-..++|+.-..+.. ........++++ +|+|.++.-.+ .....+..
T Consensus 149 g~gi~l~~Grlv~p~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~-~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~ 227 (351)
T cd00260 149 GSGIQMKDGRLVFPVYGGNAGGRVSSAIIYSDDSGKTWKLGEGVND-AGGCSECSVVELSDGKLYMYTRDNSGGRRPVYE 227 (351)
T ss_pred cCeEEecCCcEEEEEEEEcCCCCEEEEEEEECCCCCCcEECCCCCC-CCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEE
Confidence 345666 4888776543111 112345555556688976544432 112234678888 89998775443 34555655
Q ss_pred EeeCCCCCceeeEEEe
Q 015251 307 MKDYNVKESWAKELNI 322 (410)
Q Consensus 307 l~~~~~~~~W~~~~~i 322 (410)
-.|.| ..|......
T Consensus 228 S~D~G--~tWs~~~~~ 241 (351)
T cd00260 228 SRDMG--TTWTEALGT 241 (351)
T ss_pred EcCCC--cCcccCcCC
Confidence 55543 689986543
No 114
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=21.32 E-value=6.8e+02 Score=26.05 Aligned_cols=74 Identities=22% Similarity=0.325 Sum_probs=44.9
Q ss_pred EEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEE
Q 015251 284 LTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILL 363 (410)
Q Consensus 284 l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~ 363 (410)
|+..+.+=+++....+..+|||-+.. .|-+...|.. |.. ..+--++..++|+++=
T Consensus 31 lA~s~kS~~lAvsRt~g~IEiwN~~~-----~w~~~~vi~g--~~d------------------rsIE~L~W~e~~RLFS 85 (691)
T KOG2048|consen 31 LAYSHKSNQLAVSRTDGNIEIWNLSN-----NWFLEPVIHG--PED------------------RSIESLAWAEGGRLFS 85 (691)
T ss_pred EEEeccCCceeeeccCCcEEEEccCC-----CceeeEEEec--CCC------------------CceeeEEEccCCeEEe
Confidence 44444333344444578999999864 5999888876 211 1233455556667666
Q ss_pred EecCCEEEEEeCCCCcEEE
Q 015251 364 EYKSRVLVSYDPKRRTFNE 382 (410)
Q Consensus 364 ~~~~~~l~~yd~~~~~~~~ 382 (410)
...++.+.-||+-+.+-++
T Consensus 86 ~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 86 SGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred ecCCceEEEEecccCceeE
Confidence 6666666677766665544
No 115
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=20.67 E-value=1.8e+02 Score=17.10 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=16.9
Q ss_pred EECCeEEEEecCCCCCCCceEEEEEcCC
Q 015251 236 LVKGRLHWVTRPRRYSPVRGIVSFDIAD 263 (410)
Q Consensus 236 ~~~G~lyw~~~~~~~~~~~~Il~fDl~~ 263 (410)
..++.+||.... ...|.+.++..
T Consensus 18 ~~~~~lYw~D~~-----~~~I~~~~~~g 40 (43)
T smart00135 18 WIEGRLYWTDWG-----LDVIEVANLDG 40 (43)
T ss_pred ecCCEEEEEeCC-----CCEEEEEeCCC
Confidence 456889999876 36787777754
No 116
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=20.34 E-value=7.5e+02 Score=23.51 Aligned_cols=107 Identities=10% Similarity=0.123 Sum_probs=58.4
Q ss_pred eEEEEEeCCC--ceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCceeeEE-cCCCCCCCCCcceE
Q 015251 207 DVQVYTVGSP--AWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADEQFREV-PKPDCGGLNRCNYH 283 (410)
Q Consensus 207 ~~~Vyss~t~--~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e~~~~i-~lP~~~~~~~~~~~ 283 (410)
.+..|+.+++ .|+.-.... .......+..+|.+|.-+.. +.+.++|-++.+..+. ..+....... ...
T Consensus 122 ~~y~ld~~~G~~~W~~~~~~~--~~~~~~~v~~~~~v~~~s~~------g~~~al~~~tG~~~W~~~~~~~~~~~~-~~~ 192 (370)
T COG1520 122 KLYALDASTGTLVWSRNVGGS--PYYASPPVVGDGTVYVGTDD------GHLYALNADTGTLKWTYETPAPLSLSI-YGS 192 (370)
T ss_pred eEEEEECCCCcEEEEEecCCC--eEEecCcEEcCcEEEEecCC------CeEEEEEccCCcEEEEEecCCcccccc-ccC
Confidence 4555555444 687654331 44456678899999988744 7899999987654332 2221111111 111
Q ss_pred EEEeCCeEEEEEeCCCCeEEEEEEeeCCCCCceeeEEEecc
Q 015251 284 LTVLSGCLSVAVYGNYGKLEIWVMKDYNVKESWAKELNIGA 324 (410)
Q Consensus 284 l~~~~G~L~~~~~~~~~~l~IW~l~~~~~~~~W~~~~~i~~ 324 (410)
.+..+|.+++-... . .=.+|.++-......|........
T Consensus 193 ~~~~~~~vy~~~~~-~-~~~~~a~~~~~G~~~w~~~~~~~~ 231 (370)
T COG1520 193 PAIASGTVYVGSDG-Y-DGILYALNAEDGTLKWSQKVSQTI 231 (370)
T ss_pred ceeecceEEEecCC-C-cceEEEEEccCCcEeeeeeeeccc
Confidence 22344444333221 1 227888876433678998655443
No 117
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=20.29 E-value=57 Score=24.47 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.6
Q ss_pred CCCCCCcHHHHHHHHccCCccccc
Q 015251 23 TGMETLPREIVLHILLRLPITSLV 46 (410)
Q Consensus 23 ~~~~~LP~Dll~eIL~rLP~~sl~ 46 (410)
..|..||.|+-..||..|+-++|.
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~ 93 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLK 93 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHH
Confidence 669999999999999999988764
No 118
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=20.19 E-value=7.8e+02 Score=23.65 Aligned_cols=187 Identities=14% Similarity=0.163 Sum_probs=88.6
Q ss_pred CceEEEEccccccee-eCCCCCCCCCCceEEEEEEeCCCCCeEEEEEEEEecCCCCCccccccccccCCceEEEEEeCCC
Q 015251 138 NDAICIYNPFTRDYI-ELPKSMQYPDQEVVFGFGFHPVSKEYKVIKIVYYRKSCSNSSFQRTRRVIYPRSDVQVYTVGSP 216 (410)
Q Consensus 138 ~~~~~V~NP~T~~~~-~LP~~~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vyss~t~ 216 (410)
.+.+.|.+..|++.+ .+|... ....++.+.+. +.|-.|. . +. ..+.+++..++
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~-----~~h~~~~~s~D-gr~~yv~-~--rd-----------------g~vsviD~~~~ 68 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG-----APHAGLKFSPD-GRYLYVA-N--RD-----------------GTVSVIDLATG 68 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST-----TEEEEEE-TT--SSEEEEE-E--TT-----------------SEEEEEETTSS
T ss_pred CCEEEEEECCCCeEEEEEcCCC-----CceeEEEecCC-CCEEEEE-c--CC-----------------CeEEEEECCcc
Confidence 568899999998754 455432 12233444332 4454333 1 11 46778888887
Q ss_pred ceeecCCCCceeecCCcceEECCeEEEEecCCCCCCCceEEEEEcCCc-eeeEEcCCCCCC--CCCcceEEEEeCCeE-E
Q 015251 217 AWRSKGKLAYQFVRRPSEALVKGRLHWVTRPRRYSPVRGIVSFDIADE-QFREVPKPDCGG--LNRCNYHLTVLSGCL-S 292 (410)
Q Consensus 217 ~Wr~~~~~p~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~Il~fDl~~e-~~~~i~lP~~~~--~~~~~~~l~~~~G~L-~ 292 (410)
+ .+...+......+-++.-+|..-+.+.. ..+.+..+|.++- ..+.|+...... .......+....++- +
T Consensus 69 ~--~v~~i~~G~~~~~i~~s~DG~~~~v~n~----~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f 142 (369)
T PF02239_consen 69 K--VVATIKVGGNPRGIAVSPDGKYVYVANY----EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF 142 (369)
T ss_dssp S--EEEEEE-SSEEEEEEE--TTTEEEEEEE----ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred c--EEEEEecCCCcceEEEcCCCCEEEEEec----CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence 5 2221111111111234457765544432 2478999998774 456666542111 111122344444433 3
Q ss_pred EEEeCCCCeEEEEEEeeCCCC-CceeeEEEeccCcCcccccccCCcchhhcccCCCceeEEEEEccCCcEEEE--ecCCE
Q 015251 293 VAVYGNYGKLEIWVMKDYNVK-ESWAKELNIGAYIPKGLKQSLDRPLKIWKNSLNGRVVRVVCILEKGEILLE--YKSRV 369 (410)
Q Consensus 293 ~~~~~~~~~l~IW~l~~~~~~-~~W~~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~~--~~~~~ 369 (410)
++... +.=+||+++ |... ........+.- +..-.++..+|+.++. ..+.+
T Consensus 143 Vv~lk--d~~~I~vVd-y~d~~~~~~~~i~~g~------------------------~~~D~~~dpdgry~~va~~~sn~ 195 (369)
T PF02239_consen 143 VVNLK--DTGEIWVVD-YSDPKNLKVTTIKVGR------------------------FPHDGGFDPDGRYFLVAANGSNK 195 (369)
T ss_dssp EEEET--TTTEEEEEE-TTTSSCEEEEEEE--T------------------------TEEEEEE-TTSSEEEEEEGGGTE
T ss_pred EEEEc--cCCeEEEEE-eccccccceeeecccc------------------------cccccccCcccceeeecccccce
Confidence 33332 234788885 3322 22222222221 1222455667776654 45668
Q ss_pred EEEEeCCCCcEEEE
Q 015251 370 LVSYDPKRRTFNEF 383 (410)
Q Consensus 370 l~~yd~~~~~~~~v 383 (410)
+...|.+++++..+
T Consensus 196 i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 196 IAVIDTKTGKLVAL 209 (369)
T ss_dssp EEEEETTTTEEEEE
T ss_pred eEEEeeccceEEEE
Confidence 88999999887654
Done!