BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015252
(410 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LMM6|BPS1_ARATH Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2
SV=1
Length = 349
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/352 (58%), Positives = 264/352 (75%), Gaps = 14/352 (3%)
Query: 1 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
M+RPQDP R FFPFGNPF+ +S K S LS KL+ LL +FE LA + KL+PK+K DIL
Sbjct: 1 MARPQDPPRGFFPFGNPFKNLSSKNSVLSSKLLPLLNNFETNLASSISKLVPKEKSDILT 60
Query: 61 LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
+SWM+ AMESLCETHN IK LIT+LELPVSDW++KW+DVYLDISV LLD+C AFSS LT+
Sbjct: 61 VSWMKQAMESLCETHNGIKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTR 120
Query: 121 VSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDL 180
++QGHLLLQ LH L+++SP +A SSLD+W++HI SKNPR+E+CR+IL +LV +L+L
Sbjct: 121 LNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNL 180
Query: 181 PKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSALQ 240
PKVKNSAKGKVLMRA+YGVKV T+++ +FAAAFSGS++NL+ L VS+ LPWA +F +Q
Sbjct: 181 PKVKNSAKGKVLMRALYGVKVKTLYISGVFAAAFSGSSQNLMYLTVSNELPWAQSFMEVQ 240
Query: 241 ANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQN-EVDTVEEELLQKSVLDLGKRA 299
+NAE++NI S TVL ELEAV VKKLY IQ +D + + L+ SV +
Sbjct: 241 NTMNAEIKNIFLSDGLTVLKELEAVASGVKKLYPAIQQGSIDPISLQPLKDSVTE----- 295
Query: 300 DNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATG------TAPDILVGRN 345
LS G+D ++K VD FFKI+LSGRD LL NLR+ G T+P G+N
Sbjct: 296 --LSNGIDLVSKEVDCFFKILLSGRDTLLENLRSMGASTLQATSPKKAAGKN 345
>sp|A2Z9A6|U496D_ORYSI UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3
SV=2
Length = 456
Score = 282 bits (721), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 195/312 (62%), Gaps = 16/312 (5%)
Query: 1 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
MSR R FFP GNPFR+M P G+ LS KL LLA +E+ LA LRKL P+ D+L
Sbjct: 1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLT 60
Query: 61 LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
LSWMRLA++ L E H I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L++
Sbjct: 61 LSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSR 120
Query: 121 VSQGHLLLQCVLHTLDSSSPT----QFGRACSSLDNWREHISSKNPRVESCRSILDNLVA 176
+ QG LLLQ LH L S S Q RA SL W E + + PR+ SC + L L
Sbjct: 121 LDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCPRLVSCSATLQELAG 180
Query: 177 SLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAF 236
+L L KVKNS KGKVLMRA+YG++ +TVFVCSIF A SGS K L+EL+V + W+ AF
Sbjct: 181 NLSLMKVKNSVKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVELHVPEKFGWSQAF 240
Query: 237 SALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEV------------IQNEVDTVE 284
+ L V+ E+ L+ G + ELE V+ K+L+ + + N V E
Sbjct: 241 NDLHTAVSEELTRQLAGGSVAAVKELEEVEACAKRLHVLASTSQLEEEAANLANAVSHTE 300
Query: 285 EELLQKSVLDLG 296
EE++ S++ G
Sbjct: 301 EEVMSDSIVQEG 312
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 280 VDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPD 339
V +EELL + + K A+ L GLD L+K V FF+IVL+GRDALLCNLR + A
Sbjct: 392 VQESKEELLN-CISSMSKSAEGLRHGLDSLSKRVGDFFQIVLTGRDALLCNLRISDAASK 450
Query: 340 I 340
+
Sbjct: 451 V 451
>sp|Q337C0|U496D_ORYSJ UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300
PE=2 SV=1
Length = 456
Score = 280 bits (716), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 151/312 (48%), Positives = 194/312 (62%), Gaps = 16/312 (5%)
Query: 1 MSRPQDPHRPFFPFGNPFRMMSPKGSRLSPKLVSLLADFEETLAERLRKLMPKDKDDILN 60
MSR R FFP GNPFR+M P G+ LS KL LLA +E+ LA LRKL P+ D+L
Sbjct: 1 MSRAHGSPRSFFPVGNPFRVMFPGGAHLSRKLQELLASYEDALALSLRKLKPEAASDVLT 60
Query: 61 LSWMRLAMESLCETHNVIKDLITELELPVSDWDEKWIDVYLDISVNLLDICIAFSSVLTK 120
LSWMRLA++ L E H I +LIT+LELPVSDWD+KW+D+YL+ SV LLDICIA SS L++
Sbjct: 61 LSWMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSR 120
Query: 121 VSQGHLLLQCVLHTLDSSSPT----QFGRACSSLDNWREHISSKNPRVESCRSILDNLVA 176
+ QG LLLQ LH L S S Q RA SL W E + + R+ SC + L L
Sbjct: 121 LDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCARLVSCSATLQELAG 180
Query: 177 SLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAF 236
+L L KVKNSAKGKVLMRA+YG++ +TVFVCSIF A SGS K L+EL+V + W+ AF
Sbjct: 181 NLSLMKVKNSAKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVELHVPEKFGWSQAF 240
Query: 237 SALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEV------------IQNEVDTVE 284
+ L V+ E+ LS G + ELE V+ ++L+ + + N V E
Sbjct: 241 NDLHTAVSEELTRQLSGGSVAAVKELEEVEACARRLHVLASTSQLEEEAANLANAVSHTE 300
Query: 285 EELLQKSVLDLG 296
EE++ S+ G
Sbjct: 301 EEVMSDSIAQEG 312
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 280 VDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPD 339
V +EELL + + K A+ L GLD L+K V FF+IVL+GRDALLCNLR + A
Sbjct: 392 VQESKEELLN-CISSMSKSAEGLRHGLDSLSKRVGDFFQIVLTGRDALLCNLRISDAASK 450
Query: 340 I 340
+
Sbjct: 451 V 451
>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3
Length = 18141
Score = 42.0 bits (97), Expect = 0.008, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 162 PRVESCRSILDNLVASLDLPKVKNSAKGKV-LMRAMYGVKVLTVFVCSIFAAAFSGSAKN 220
P VE S ++++ L+ P S+KG+V L+ + +K T A S S +
Sbjct: 8472 PNVEKIDSF--DVLSDLNTPDYNKSSKGRVQLIESTTSLKTTT--------AVVSESTEE 8521
Query: 221 LLELNVSDTLPWAPA-FSALQANVNAEVRNILS--SGRATVLNELEAVDGSVKKLYEVIQ 277
L +LN++ + P + + Q +E N+L S VL LE + S+K L+E+
Sbjct: 8522 LKDLNITQPVHIKPKPYESDQKISISEQTNVLEHVSSLNPVLPALETIQSSIKSLHEINV 8581
Query: 278 NEVDTVEEELLQKSVLDLGKR 298
E D +E+E K V + R
Sbjct: 8582 RETDILEKEESLKDVDHISGR 8602
>sp|Q63HN8|RN213_HUMAN E3 ubiquitin-protein ligase RNF213 OS=Homo sapiens GN=RNF213 PE=1
SV=3
Length = 5207
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 17/238 (7%)
Query: 17 PFRMMSPKGSRLSPKLVSLLADFEE--TLAERL--RKLMPKDKDDI-LNLSWMRLAMESL 71
P R + + L P L+ L+ DF + +AE+L ++++ + + I L+ + R+ E L
Sbjct: 2560 PLRQLVYRVHALPPSLIPLVWDFGQLSDVAEKLYIQQIVQRLVESISLDENGTRVITEVL 2619
Query: 72 CETHNVIKDLITELELPVSDWD-EKWIDVYL---DISVNLLDICIAFSSVLTKVSQGHLL 127
C + ++ E VS D E+ + V+ + S LL AF S + VS+ H
Sbjct: 2620 CASQGFMRKTEDECSF-VSLRDVERCVKVFRWFHEHSAMLLAQLNAFLSK-SSVSKNHTE 2677
Query: 128 LQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPR-VESCRSILDNLVASLDL-----P 181
VL +L + + + D++R+ I+ P+ + R +LD + + DL P
Sbjct: 2678 RDPVLWSLMLAIGVCYHASLEKKDSYRKAIARFFPKPYDDSRLLLDEITRAQDLFLDGVP 2737
Query: 182 KVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFSAL 239
K AK L ++ + V +F GS+K+L + V+D + A+S L
Sbjct: 2738 LRKTIAKNLALKENVFMMVVCIELKIPLFLVGKPGSSKSLAKTIVADAMQGPAAYSDL 2795
>sp|Q9DCD0|6PGD_MOUSE 6-phosphogluconate dehydrogenase, decarboxylating OS=Mus musculus
GN=Pgd PE=2 SV=3
Length = 483
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 31/189 (16%)
Query: 68 MESLCETHNVIKDLIT----ELELPVSDWDEKWIDVYL-DISVNLL-----DICIAFSSV 117
M+ +CE ++++KD++ E+ +W++ +D +L +I+ N+L D +
Sbjct: 195 MQLICEAYHLMKDVLGMRHEEMAQAFEEWNKTELDSFLIEITANILKYRDTDGKELLPKI 254
Query: 118 LTKVSQGHLLLQCVLHTLDSSSPTQ------FGRACSSLDNWREHISS--KNPRV----E 165
Q + L+ P F R SSL R S K P+V
Sbjct: 255 RDSAGQKGTGKWTAISALEYGMPVTLIGEAVFARCLSSLKEERVQASQKLKGPKVVQLEG 314
Query: 166 SCRSILDNLVASLDLPKVKNSAKGKVLMRAM---------YGVKVLTVFVCSIFAAAFSG 216
S +S L+++ +L K+ + A+G +L+R YG L I + F G
Sbjct: 315 SKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLG 374
Query: 217 SAKNLLELN 225
K+ E N
Sbjct: 375 KIKDAFERN 383
>sp|O83394|SECA_TREPA Protein translocase subunit SecA OS=Treponema pallidum (strain
Nichols) GN=secA PE=3 SV=1
Length = 916
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 60/159 (37%), Gaps = 24/159 (15%)
Query: 246 EVRNILSSGRATVLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQG 305
E R+ + + RA +L + V+ + E + E+ + +EL ++ L LG NLS
Sbjct: 676 EQRSFIYAQRAQILIDEHVVERVYTTIEEYLNREITALRQELKRRGRLSLGAFQQNLST- 734
Query: 306 LDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDILVGRNAEPVRRKLI---SQELAQTW 362
F L G DA N GT ++ + + K + +Q +
Sbjct: 735 ----------LFDYALGGEDASGWNETRLGTLKQEILAHLKKNIESKYLLAGAQNMDTFI 784
Query: 363 RYYPPCFISKSWITNLSPACYGVHCVNLLGFLRCSCLCR 401
RY I K W+ +L LL LR S R
Sbjct: 785 RYQYVQAIDKKWLDHLE----------LLEILRESVYLR 813
>sp|Q7VQJ2|MURE_BLOFL UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate
ligase OS=Blochmannia floridanus GN=murE PE=3 SV=1
Length = 499
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 157 ISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCS 208
I++ NPRVE + I+D+++ K++NS K K++ +Y + ++ CS
Sbjct: 418 ITNDNPRVEDPKLIIDDIIC-----KIRNSEKLKIIEDRVYAINMVVSKACS 464
>sp|O13892|YE38_SCHPO Uncharacterized protein C20G4.08 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC20G4.08 PE=1 SV=2
Length = 1076
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 18/181 (9%)
Query: 169 SILDNLVASLDLPKVKN--SAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNV 226
SI+ N++ASL+ KN S + ++L K T + S+ ++ + + +LE V
Sbjct: 727 SIVSNILASLEKSVHKNYESLRSQLLEYKAANEK-HTEAILSVVSSTLTENTGKILESVV 785
Query: 227 SDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEA-VDGSVKKLYEVIQNEVDTVEE 285
++ A L+ + VRN L + L ++E+ ++ S+ +L ++ + D
Sbjct: 786 EKSMQVA-----LKEEIANSVRNALKNN----LEKIESFLENSIAELQNSVREDFDKQTS 836
Query: 286 ELLQ-----KSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLRATGTAPDI 340
L Q ++V K ++ L+ K ++G+ + VL + L + TAPD+
Sbjct: 837 SLAQLRYSIQNVAHAQKESEVKYNELNEQVKTLEGYVETVLEKFNDLKIENKVPETAPDV 896
Query: 341 L 341
+
Sbjct: 897 V 897
>sp|Q869T7|PAKF_DICDI Serine/threonine-protein kinase pakF OS=Dictyostelium discoideum
GN=pakF PE=3 SV=1
Length = 1176
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 215 SGSAKNLLELNVSDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYE 274
SGS NLL + + LP P FS N ++ L +D S +K+
Sbjct: 879 SGSGNNLLHVAPNKPLPITPPFSISMTNEFKQLETKL----------FTYIDSSNQKIVN 928
Query: 275 VIQNEVDTVEEELLQKSVLDLGKR 298
I+NE+ +E ++ K ++L ++
Sbjct: 929 DIKNEIKQLESSIINKININLQQQ 952
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,981,841
Number of Sequences: 539616
Number of extensions: 5825023
Number of successful extensions: 17894
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 17878
Number of HSP's gapped (non-prelim): 32
length of query: 410
length of database: 191,569,459
effective HSP length: 120
effective length of query: 290
effective length of database: 126,815,539
effective search space: 36776506310
effective search space used: 36776506310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)