Query 015252
Match_columns 410
No_of_seqs 140 out of 295
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:21:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ljm_A Coil Ser L9C; de novo d 58.9 11 0.00038 23.3 3.3 22 294-315 5-26 (31)
2 2pnv_A Small conductance calci 56.6 21 0.00072 24.5 4.9 31 289-319 8-38 (43)
3 2akf_A Coronin-1A; coiled coil 50.9 22 0.00074 22.4 3.7 18 289-306 12-29 (32)
4 3na7_A HP0958; flagellar bioge 47.7 88 0.003 28.9 9.5 21 309-329 95-115 (256)
5 2xz3_A Maltose ABC transporter 39.6 66 0.0023 32.0 7.7 43 288-331 377-419 (463)
6 2akf_A Coronin-1A; coiled coil 38.0 46 0.0016 20.9 3.8 23 291-313 7-29 (32)
7 2yy0_A C-MYC-binding protein; 36.7 52 0.0018 23.4 4.6 32 283-314 19-50 (53)
8 1mof_A Moloney murine leukemia 34.7 48 0.0017 23.9 4.1 32 299-331 4-35 (55)
9 1iq5_B Ca2+/calmodulin depende 33.6 13 0.00043 23.1 0.7 7 13-19 21-27 (27)
10 3nmd_A CGMP dependent protein 32.7 1.1E+02 0.0037 23.3 5.9 26 291-316 41-66 (72)
11 1wt6_A Myotonin-protein kinase 31.8 1.8E+02 0.0061 22.5 8.8 35 236-275 12-46 (81)
12 1wyy_A E2 glycoprotein; membra 31.6 1.6E+02 0.0055 25.3 7.5 63 262-329 38-105 (149)
13 1kd8_B GABH BLL, GCN4 acid bas 30.5 44 0.0015 22.0 2.9 22 295-316 6-27 (36)
14 1ud0_A HSC70, 70 kDa heat-shoc 30.0 1.8E+02 0.006 22.9 7.4 13 287-299 36-48 (113)
15 1ckk_B Camkk, protein (RAT Ca2 29.8 15 0.00051 22.6 0.6 6 13-18 21-26 (26)
16 1ses_A Seryl-tRNA synthetase; 29.3 86 0.0029 31.4 6.5 55 260-315 42-96 (421)
17 2p32_A Heat shock 70 kDa prote 29.0 2.1E+02 0.007 23.0 7.8 19 282-300 45-63 (120)
18 3mq7_A Bone marrow stromal ant 28.9 1.8E+02 0.0061 24.1 7.1 33 289-321 70-102 (121)
19 4dnd_A Syntaxin-10, SYN10; str 28.5 2E+02 0.0067 24.1 7.6 28 288-315 65-92 (130)
20 1y4m_A HERV-FRD_6P24.1 proviru 28.1 27 0.00092 25.1 1.8 31 300-331 3-33 (53)
21 3onj_A T-snare VTI1; helix, HA 27.6 2.2E+02 0.0076 22.3 8.5 28 289-316 33-60 (97)
22 1aq5_A Matrilin-1, CMP, cartil 27.3 90 0.0031 21.8 4.3 24 290-313 23-46 (47)
23 1t2k_D Cyclic-AMP-dependent tr 27.2 1.4E+02 0.0048 21.3 5.7 30 292-321 24-53 (61)
24 1g6u_A Domain swapped dimer; d 26.9 1.5E+02 0.005 20.0 6.2 31 279-309 16-46 (48)
25 1lq7_A Alpha3W; three helix bu 25.6 1.9E+02 0.0063 20.7 7.5 18 287-304 29-46 (67)
26 3c3f_A Alpha/beta peptide with 24.5 67 0.0023 20.8 2.9 24 293-316 4-27 (34)
27 2oxj_A Hybrid alpha/beta pepti 23.9 69 0.0024 20.7 2.9 24 293-316 4-27 (34)
28 3hnw_A Uncharacterized protein 22.7 3.2E+02 0.011 22.9 8.0 56 258-315 80-135 (138)
29 1ozj_A SMAD 3; MAD homology do 22.0 99 0.0034 26.6 4.5 30 283-313 26-55 (144)
30 2pnv_A Small conductance calci 21.4 83 0.0028 21.5 3.1 22 292-313 18-39 (43)
31 2zqm_A Prefoldin beta subunit 21.1 2.2E+02 0.0077 22.4 6.5 45 288-332 68-112 (117)
32 1pzq_A Erythronolide synthase; 20.9 1.8E+02 0.0062 20.4 4.8 37 289-325 11-49 (60)
33 1jnm_A Proto-oncogene C-JUN; B 20.8 1.3E+02 0.0044 21.6 4.4 35 291-325 23-57 (62)
34 3lof_A Heat shock 70 kDa prote 20.7 3E+02 0.01 21.7 7.1 20 282-301 36-55 (113)
35 1m1j_C Fibrinogen gamma chain; 20.4 6.4E+02 0.022 25.1 10.9 47 227-278 20-66 (409)
36 1apq_A Complement protease C1R 20.3 14 0.00046 25.3 -1.1 20 380-400 20-39 (53)
37 3mtu_A Tropomyosin alpha-1 cha 20.1 1.9E+02 0.0065 21.8 5.4 38 286-323 5-42 (75)
No 1
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=58.92 E-value=11 Score=23.27 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhchHHHHHHHhH
Q 015252 294 DLGKRADNLSQGLDHLTKAVDG 315 (410)
Q Consensus 294 eL~~~le~Le~gle~Le~~Vd~ 315 (410)
.+.++|.+|+..++.||+.++.
T Consensus 5 alekkcaalesklqalekklea 26 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555543
No 2
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=56.63 E-value=21 Score=24.51 Aligned_cols=31 Identities=13% Similarity=0.311 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHHHHH
Q 015252 289 QKSVLDLGKRADNLSQGLDHLTKAVDGFFKI 319 (410)
Q Consensus 289 ~~~veeL~~~le~Le~gle~Le~~Vd~lFr~ 319 (410)
.+-+.++..+-+.||+.|..||.+++.+-..
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666665443
No 3
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=50.89 E-value=22 Score=22.39 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhch
Q 015252 289 QKSVLDLGKRADNLSQGL 306 (410)
Q Consensus 289 ~~~veeL~~~le~Le~gl 306 (410)
...|++|+++++.|++.+
T Consensus 12 ~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 12 NAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344666666665555443
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=47.66 E-value=88 Score=28.88 Aligned_cols=21 Identities=10% Similarity=-0.175 Sum_probs=8.2
Q ss_pred HHHHHhHHHHHHHHhHHHHHh
Q 015252 309 LTKAVDGFFKIVLSGRDALLC 329 (410)
Q Consensus 309 Le~~Vd~lFr~LI~~R~~LL~ 329 (410)
|..+++.+=+++-.....++.
T Consensus 95 L~kEie~~~~~i~~lE~eile 115 (256)
T 3na7_A 95 LNIEEDIAKERSNQANREIEN 115 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444443
No 5
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=39.56 E-value=66 Score=31.96 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 015252 288 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 331 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l 331 (410)
.+.-+++++.-++++++.|..|+++++.+-..++++|-.| |.|
T Consensus 377 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~ 419 (463)
T 2xz3_A 377 LTSLIHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGL-DWL 419 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hHH
Confidence 3455788999999999999999999999999999999864 443
No 6
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=38.00 E-value=46 Score=20.90 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhchHHHHHHH
Q 015252 291 SVLDLGKRADNLSQGLDHLTKAV 313 (410)
Q Consensus 291 ~veeL~~~le~Le~gle~Le~~V 313 (410)
.+..|+..+.+|.+.+|.||+.|
T Consensus 7 ~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777777777655
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.74 E-value=52 Score=23.38 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHh
Q 015252 283 VEEELLQKSVLDLGKRADNLSQGLDHLTKAVD 314 (410)
Q Consensus 283 e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd 314 (410)
.+.+.++.-.++|+.+++.|...++++..+++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666677777777777777777666554
No 8
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=34.71 E-value=48 Score=23.92 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=24.0
Q ss_pred HHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 015252 299 ADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 331 (410)
Q Consensus 299 le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l 331 (410)
++.++..|..+.++++.+...+.++|..| |.|
T Consensus 4 l~~~~~si~~l~~ql~sla~vvlQNRraL-D~L 35 (55)
T 1mof_A 4 LREVEKSISNLEKSLTSLSEVVLQNRRGL-DLL 35 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34556777888888888999999999864 443
No 9
>1iq5_B Ca2+/calmodulin dependent kinase kinase; EF-hand, protein-peptide complex, metal binding protein/protein binding complex; 1.80A {Xenopus laevis}
Probab=33.61 E-value=13 Score=23.11 Aligned_cols=7 Identities=86% Similarity=1.701 Sum_probs=6.0
Q ss_pred CCCCccc
Q 015252 13 PFGNPFR 19 (410)
Q Consensus 13 ~~g~~~~ 19 (410)
||||||.
T Consensus 21 sf~nPf~ 27 (27)
T 1iq5_B 21 RFGNPFR 27 (27)
T ss_dssp SSSCSCC
T ss_pred cccCCCC
Confidence 8999984
No 10
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.75 E-value=1.1e+02 Score=23.29 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHH
Q 015252 291 SVLDLGKRADNLSQGLDHLTKAVDGF 316 (410)
Q Consensus 291 ~veeL~~~le~Le~gle~Le~~Vd~l 316 (410)
.|+++.+.+...+.-|..|-.++|.+
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555555555554444443
No 11
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=31.80 E-value=1.8e+02 Score=22.54 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHH
Q 015252 236 FSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEV 275 (410)
Q Consensus 236 l~~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~ 275 (410)
...||...-.||+.+ ...-.|+.+|+++...+...
T Consensus 12 ~leLQSALeaEIqAK-----Q~i~EELs~vr~~ni~~esk 46 (81)
T 1wt6_A 12 LRELQEALEEEVLTR-----QSLSREMEAIRTDNQNFASQ 46 (81)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 347788888888754 23557888888776655544
No 12
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=31.62 E-value=1.6e+02 Score=25.26 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhHHH-----HHHHHhHHHHHh
Q 015252 262 LEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDGFF-----KIVLSGRDALLC 329 (410)
Q Consensus 262 le~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~lF-----r~LI~~R~~LL~ 329 (410)
|..+..|+.++...+ ..+...+...+..|.+.+++....|+++-..+|.+- +++|.||.+-+|
T Consensus 38 ~~tts~AL~kiQ~VV-----N~q~~aL~~l~~qL~~nFgAISssi~dIy~rLd~leAdaQVDRLItGRl~s~n 105 (149)
T 1wyy_A 38 LTTTSTALGKLQDVV-----NQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGGRGGSD 105 (149)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 455555555554432 234456778888999999999999999888888874 789999988666
No 13
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.55 E-value=44 Score=21.95 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=9.8
Q ss_pred HHHHHHHHhhchHHHHHHHhHH
Q 015252 295 LGKRADNLSQGLDHLTKAVDGF 316 (410)
Q Consensus 295 L~~~le~Le~gle~Le~~Vd~l 316 (410)
|..++|.|-....+|+.+|..+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333344445555555544
No 14
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=30.01 E-value=1.8e+02 Score=22.94 Aligned_cols=13 Identities=0% Similarity=-0.125 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 015252 287 LLQKSVLDLGKRA 299 (410)
Q Consensus 287 ~v~~~veeL~~~l 299 (410)
.+...+++++.++
T Consensus 36 ~i~~~i~~l~~~L 48 (113)
T 1ud0_A 36 KILDKCNEIISWL 48 (113)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 15
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=29.78 E-value=15 Score=22.57 Aligned_cols=6 Identities=83% Similarity=1.796 Sum_probs=5.3
Q ss_pred CCCCcc
Q 015252 13 PFGNPF 18 (410)
Q Consensus 13 ~~g~~~ 18 (410)
||||||
T Consensus 21 sf~nPf 26 (26)
T 1ckk_B 21 SFGNPF 26 (26)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 799997
No 16
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.28 E-value=86 Score=31.41 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 015252 260 NELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDG 315 (410)
Q Consensus 260 ~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~ 315 (410)
.|++++.+.-+.+...|.. ...++.+++...+.+++..+..++..+..++++++.
T Consensus 42 ~~~~~l~~~~n~~sk~i~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (421)
T 1ses_A 42 KRLQEVQTERNQVAKRVPK-APPEEKEALIARGKALGEEAKRLEEALREKEARLEA 96 (421)
T ss_dssp HHHHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333322 122333445566666666666666666665555544
No 17
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=29.00 E-value=2.1e+02 Score=23.04 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 015252 282 TVEEELLQKSVLDLGKRAD 300 (410)
Q Consensus 282 ~e~~e~v~~~veeL~~~le 300 (410)
+++.+.+...+++++.+++
T Consensus 45 ~eek~~I~~~i~el~~~L~ 63 (120)
T 2p32_A 45 PEDKKKIEDKCDEILKWLD 63 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666654
No 18
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.93 E-value=1.8e+02 Score=24.12 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHH
Q 015252 289 QKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVL 321 (410)
Q Consensus 289 ~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI 321 (410)
...|++|+..+..|..-|++.+.+|+.+-+...
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 456899999999999999999999999887764
No 19
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=28.54 E-value=2e+02 Score=24.06 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 015252 288 LQKSVLDLGKRADNLSQGLDHLTKAVDG 315 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd~ 315 (410)
+...-.||+..++.++.-|++|++-|.=
T Consensus 65 ~~~~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 65 LDWTTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666653
No 20
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=28.10 E-value=27 Score=25.09 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=24.7
Q ss_pred HHHhhchHHHHHHHhHHHHHHHHhHHHHHhhh
Q 015252 300 DNLSQGLDHLTKAVDGFFKIVLSGRDALLCNL 331 (410)
Q Consensus 300 e~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l 331 (410)
+.++++|..+.++++.+...+.++|..| |.+
T Consensus 3 ~~l~~sl~~l~~ql~sla~vvlQNRraL-DlL 33 (53)
T 1y4m_A 3 DTMAKALTTMQEQIDSLAAVVLQNRRGL-DML 33 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3467788899999999999999999864 443
No 21
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=27.62 E-value=2.2e+02 Score=22.29 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHhHH
Q 015252 289 QKSVLDLGKRADNLSQGLDHLTKAVDGF 316 (410)
Q Consensus 289 ~~~veeL~~~le~Le~gle~Le~~Vd~l 316 (410)
+..+.++++.++..++-|+.++-++..+
T Consensus 33 k~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 33 NTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5667777777777777777777777776
No 22
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=27.34 E-value=90 Score=21.78 Aligned_cols=24 Identities=8% Similarity=0.322 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Q 015252 290 KSVLDLGKRADNLSQGLDHLTKAV 313 (410)
Q Consensus 290 ~~veeL~~~le~Le~gle~Le~~V 313 (410)
..++.|..+++.+...++.||.++
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446666666666666666666553
No 23
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=27.22 E-value=1.4e+02 Score=21.30 Aligned_cols=30 Identities=30% Similarity=0.237 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhchHHHHHHHhHHHHHHH
Q 015252 292 VLDLGKRADNLSQGLDHLTKAVDGFFKIVL 321 (410)
Q Consensus 292 veeL~~~le~Le~gle~Le~~Vd~lFr~LI 321 (410)
+++|+..++.|+.--..|..+|..+=..+.
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333
No 24
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.93 E-value=1.5e+02 Score=19.96 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=18.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 015252 279 EVDTVEEELLQKSVLDLGKRADNLSQGLDHL 309 (410)
Q Consensus 279 ~~~~e~~e~v~~~veeL~~~le~Le~gle~L 309 (410)
+..+++-..+....+.+.+++.+|...++.|
T Consensus 16 gfspeelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 16 GFSPEELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555666666666666655543
No 25
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=25.60 E-value=1.9e+02 Score=20.70 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 015252 287 LLQKSVLDLGKRADNLSQ 304 (410)
Q Consensus 287 ~v~~~veeL~~~le~Le~ 304 (410)
+++..-++|+++++.|.-
T Consensus 29 elkkkweelkkkieelgg 46 (67)
T 1lq7_A 29 ELKKKWEELKKKIEELGG 46 (67)
T ss_dssp HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 344445555555555443
No 26
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.47 E-value=67 Score=20.80 Aligned_cols=24 Identities=8% Similarity=0.186 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhchHHHHHHHhHH
Q 015252 293 LDLGKRADNLSQGLDHLTKAVDGF 316 (410)
Q Consensus 293 eeL~~~le~Le~gle~Le~~Vd~l 316 (410)
..|..++|.|-..-..|+.+|..+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334444444445555666666554
No 27
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=23.86 E-value=69 Score=20.75 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhhchHHHHHHHhHH
Q 015252 293 LDLGKRADNLSQGLDHLTKAVDGF 316 (410)
Q Consensus 293 eeL~~~le~Le~gle~Le~~Vd~l 316 (410)
..|..++|.|-..-++|+.+|+.+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 344444444455556666666654
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.74 E-value=3.2e+02 Score=22.92 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHhH
Q 015252 258 VLNELEAVDGSVKKLYEVIQNEVDTVEEELLQKSVLDLGKRADNLSQGLDHLTKAVDG 315 (410)
Q Consensus 258 ~l~Ele~Vdaav~~L~~~i~~~~~~e~~e~v~~~veeL~~~le~Le~gle~Le~~Vd~ 315 (410)
...+++..+..+..|+..+.. ...+.+.+...++++++....|+.-+-.||..++.
T Consensus 80 L~~~l~~~~kE~~~lK~el~~--~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 80 LSLDIENKDKEIYDLKHELIA--AQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 29
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=21.97 E-value=99 Score=26.59 Aligned_cols=30 Identities=37% Similarity=0.450 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Q 015252 283 VEEELLQKSVLDLGKRADNLSQGLDHLTKAV 313 (410)
Q Consensus 283 e~~e~v~~~veeL~~~le~Le~gle~Le~~V 313 (410)
+++...+.+++.|-+++++ ...+|.|+..|
T Consensus 26 ~~e~~~~kai~sLvKkLK~-~~~Le~L~~AV 55 (144)
T 1ozj_A 26 QEEKWCEKAVKSLVKKLKK-TGQLDELEKAI 55 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcc-cccHHHHHHHH
Confidence 4455677888888888777 55666655443
No 30
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.35 E-value=83 Score=21.50 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhchHHHHHHH
Q 015252 292 VLDLGKRADNLSQGLDHLTKAV 313 (410)
Q Consensus 292 veeL~~~le~Le~gle~Le~~V 313 (410)
=++|.+++..||..||.|.+++
T Consensus 18 ~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 18 SEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555544
No 31
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.15 E-value=2.2e+02 Score=22.36 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHHHHHhhhh
Q 015252 288 LQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRDALLCNLR 332 (410)
Q Consensus 288 v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~~LL~~l~ 332 (410)
+.+++..|.+..+.++..|+.|+++.+.+=..+-..+..|=..+.
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345677777777777777777777777777777777777766663
No 32
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=20.85 E-value=1.8e+02 Score=20.35 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHH--hhchHHHHHHHhHHHHHHHHhHH
Q 015252 289 QKSVLDLGKRADNL--SQGLDHLTKAVDGFFKIVLSGRD 325 (410)
Q Consensus 289 ~~~veeL~~~le~L--e~gle~Le~~Vd~lFr~LI~~R~ 325 (410)
.+..+||.+.+|+| +.|-|++...++.+.|+--.-|.
T Consensus 11 gdrldelekalealsaedghddvgqrlesllrrwnsrra 49 (60)
T 1pzq_A 11 GDRLDELEKALEALSAEDGHDDVGQRLESLLRRWNSRRA 49 (60)
T ss_dssp HHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhhccc
Confidence 45677888888887 57888888888888887665554
No 33
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=20.75 E-value=1.3e+02 Score=21.64 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHhHH
Q 015252 291 SVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSGRD 325 (410)
Q Consensus 291 ~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~R~ 325 (410)
.+++|...++.|+..-+.|..+|..+-..+..-+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555554444333
No 34
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=20.67 E-value=3e+02 Score=21.68 Aligned_cols=20 Identities=5% Similarity=0.068 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 015252 282 TVEEELLQKSVLDLGKRADN 301 (410)
Q Consensus 282 ~e~~e~v~~~veeL~~~le~ 301 (410)
.++.+.+...+++++.+++.
T Consensus 36 ~eek~~i~~~i~e~~~wL~~ 55 (113)
T 3lof_A 36 EADKKKVLDKCQEVISWLDA 55 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 34444566666666666543
No 35
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=20.36 E-value=6.4e+02 Score=25.05 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=27.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhhhhcCcchhhhHHHHHHHHHHHHHHHHhh
Q 015252 227 SDTLPWAPAFSALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVIQN 278 (410)
Q Consensus 227 p~~~~Ws~sl~~Lq~rV~eE~~~~~~~g~~~~l~Ele~Vdaav~~L~~~i~~ 278 (410)
|-+..=...+.+.+.-|..+++.-+ ..++|+++.-..+..|...|+.
T Consensus 20 PT~C~i~d~L~k~e~~V~~~l~~LE-----~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 20 PTTCGIADFFNKYRLTTDGELLEIE-----GLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp ECTTHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHhcchhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555654333221 2577888888888888777654
No 36
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=20.26 E-value=14 Score=25.35 Aligned_cols=20 Identities=40% Similarity=0.785 Sum_probs=16.0
Q ss_pred CCcceehhhhhhhhhhhhccc
Q 015252 380 PACYGVHCVNLLGFLRCSCLC 400 (410)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~ 400 (410)
..|.. .|+|..|..+|+|.=
T Consensus 20 ~~C~~-~C~n~~Gsy~C~C~~ 39 (53)
T 1apq_A 20 PQCQH-LCHNYVGGYFCSCRP 39 (53)
T ss_dssp CTTSS-EEEEETTEEEEECST
T ss_pred CCCCC-EeECCCCCeEEECCC
Confidence 45775 799999999998853
No 37
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=20.12 E-value=1.9e+02 Score=21.77 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHhHHHHHHHHh
Q 015252 286 ELLQKSVLDLGKRADNLSQGLDHLTKAVDGFFKIVLSG 323 (410)
Q Consensus 286 e~v~~~veeL~~~le~Le~gle~Le~~Vd~lFr~LI~~ 323 (410)
+.++..++.++...+.+.+.++.+|++=|-.|..+...
T Consensus 5 ~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdi 42 (75)
T 3mtu_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNI 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34566667777777777777777777777777666544
Done!