Query 015253
Match_columns 410
No_of_seqs 479 out of 2019
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:33:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5184 ATS1 Alpha-tubulin sup 100.0 7.8E-48 1.7E-52 360.8 26.0 325 65-410 65-424 (476)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.3E-43 2.8E-48 332.5 22.4 284 120-409 58-371 (476)
3 KOG1427 Uncharacterized conser 100.0 3.8E-42 8.2E-47 303.1 16.7 284 112-408 57-357 (443)
4 KOG1427 Uncharacterized conser 100.0 5.8E-40 1.3E-44 289.3 15.3 305 67-396 76-399 (443)
5 KOG1428 Inhibitor of type V ad 100.0 3.6E-28 7.9E-33 246.8 23.0 361 6-409 436-850 (3738)
6 KOG0783 Uncharacterized conser 99.9 4.4E-27 9.6E-32 231.2 13.5 269 127-407 140-418 (1267)
7 KOG0783 Uncharacterized conser 99.9 1.1E-26 2.5E-31 228.4 15.1 301 80-400 142-453 (1267)
8 KOG1428 Inhibitor of type V ad 99.9 9.3E-22 2E-26 200.8 20.2 272 110-393 568-892 (3738)
9 PF00415 RCC1: Regulator of ch 99.3 1.9E-12 4.1E-17 88.2 4.6 50 341-393 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.3 4.1E-12 8.8E-17 86.5 6.0 51 181-231 1-51 (51)
11 KOG0941 E3 ubiquitin protein l 99.2 5.3E-14 1.2E-18 140.9 -9.1 189 156-399 7-199 (850)
12 KOG0941 E3 ubiquitin protein l 99.2 1.6E-13 3.5E-18 137.6 -7.6 152 206-408 4-156 (850)
13 PF13540 RCC1_2: Regulator of 99.2 5E-11 1.1E-15 70.8 4.6 30 325-354 1-30 (30)
14 PF13540 RCC1_2: Regulator of 99.2 6.6E-11 1.4E-15 70.3 4.7 30 165-194 1-30 (30)
15 PF12937 F-box-like: F-box-lik 97.3 7.5E-05 1.6E-09 49.4 1.0 34 10-45 1-34 (47)
16 PF00646 F-box: F-box domain; 96.1 0.001 2.2E-08 44.1 -0.9 36 8-45 1-36 (48)
17 KOG3669 Uncharacterized conser 95.5 0.81 1.8E-05 45.7 15.9 108 223-347 190-299 (705)
18 smart00256 FBOX A Receptor for 95.4 0.0036 7.8E-08 39.6 -0.2 31 13-45 1-31 (41)
19 KOG3669 Uncharacterized conser 94.5 2.4 5.2E-05 42.6 16.1 107 118-240 190-299 (705)
20 KOG0943 Predicted ubiquitin-pr 89.6 0.029 6.3E-07 59.9 -3.9 130 214-350 372-505 (3015)
21 KOG0315 G-protein beta subunit 88.9 18 0.00038 32.8 18.7 104 219-349 89-196 (311)
22 PHA03098 kelch-like protein; P 88.5 21 0.00045 36.6 16.1 21 8-28 144-164 (534)
23 PF11725 AvrE: Pathogenicity f 88.4 3.1 6.8E-05 47.0 10.1 62 324-402 704-769 (1774)
24 KOG0943 Predicted ubiquitin-pr 88.2 0.091 2E-06 56.3 -1.5 129 269-406 374-506 (3015)
25 KOG0646 WD40 repeat protein [G 87.9 17 0.00036 35.7 13.4 139 74-240 97-244 (476)
26 PF11725 AvrE: Pathogenicity f 87.7 3.1 6.6E-05 47.1 9.5 117 262-397 697-815 (1774)
27 PF04841 Vps16_N: Vps16, N-ter 87.5 31 0.00068 34.1 19.0 69 163-240 81-152 (410)
28 KOG0315 G-protein beta subunit 87.3 23 0.00049 32.2 16.4 62 223-296 134-197 (311)
29 PLN02153 epithiospecifier prot 85.0 37 0.0008 32.5 18.6 16 122-137 79-94 (341)
30 PF13013 F-box-like_2: F-box-l 84.9 0.31 6.7E-06 38.3 0.2 33 9-43 21-53 (109)
31 KOG0646 WD40 repeat protein [G 84.2 45 0.00098 32.9 16.9 94 112-226 83-185 (476)
32 KOG0274 Cdc4 and related F-box 82.9 60 0.0013 33.4 23.9 146 216-402 332-479 (537)
33 PHA02713 hypothetical protein; 82.6 28 0.0006 36.1 13.4 21 171-191 341-361 (557)
34 KOG2997 F-box protein FBX9 [Ge 82.3 0.42 9.1E-06 44.4 0.0 56 6-63 103-161 (366)
35 PLN02153 epithiospecifier prot 82.0 49 0.0011 31.6 17.3 18 278-296 129-146 (341)
36 KOG1900 Nuclear pore complex, 81.9 69 0.0015 36.0 16.1 202 127-349 97-339 (1311)
37 PF07569 Hira: TUP1-like enhan 80.4 13 0.00029 33.2 9.0 29 269-297 13-41 (219)
38 PLN03215 ascorbic acid mannose 80.2 21 0.00046 34.6 10.7 62 164-241 161-225 (373)
39 PF07569 Hira: TUP1-like enhan 76.5 18 0.00039 32.4 8.7 28 215-242 12-39 (219)
40 KOG4441 Proteins containing BT 73.7 1.2E+02 0.0026 31.6 15.5 57 283-349 471-530 (571)
41 smart00706 TECPR Beta propelle 73.3 7.2 0.00016 23.4 3.7 24 269-292 8-32 (35)
42 KOG4693 Uncharacterized conser 72.0 42 0.0009 30.8 9.5 17 120-136 80-96 (392)
43 smart00706 TECPR Beta propelle 69.7 8.8 0.00019 23.0 3.5 25 163-187 8-33 (35)
44 KOG0649 WD40 repeat protein [G 67.0 54 0.0012 29.7 9.1 47 269-316 63-110 (325)
45 COG4257 Vgb Streptogramin lyas 67.0 79 0.0017 29.4 10.2 107 224-355 62-173 (353)
46 PHA03098 kelch-like protein; P 65.9 1.4E+02 0.003 30.6 13.5 17 121-137 335-351 (534)
47 PF04762 IKI3: IKI3 family; I 65.2 1.2E+02 0.0027 33.5 13.4 27 163-189 427-455 (928)
48 PF02239 Cytochrom_D1: Cytochr 60.3 1.7E+02 0.0037 28.4 13.7 119 162-294 26-156 (369)
49 KOG0291 WD40-repeat-containing 57.8 2.6E+02 0.0057 29.8 18.4 121 165-298 300-424 (893)
50 PHA02713 hypothetical protein; 57.2 2.4E+02 0.0052 29.2 15.1 16 228-243 345-360 (557)
51 TIGR01063 gyrA DNA gyrase, A s 55.3 3.1E+02 0.0067 29.9 22.0 164 170-348 544-716 (800)
52 PRK05560 DNA gyrase subunit A; 54.7 3.2E+02 0.0069 29.8 21.7 164 170-348 546-719 (805)
53 PRK14131 N-acetylneuraminic ac 53.8 1.4E+02 0.0031 29.0 10.7 17 121-137 131-148 (376)
54 KOG1240 Protein kinase contain 53.7 3.8E+02 0.0082 30.4 14.1 122 164-296 1050-1181(1431)
55 KOG0293 WD40 repeat-containing 49.5 2E+02 0.0044 28.2 10.3 25 218-242 443-469 (519)
56 KOG4693 Uncharacterized conser 48.7 1.6E+02 0.0035 27.2 9.0 23 332-355 80-104 (392)
57 KOG1539 WD repeat protein [Gen 48.4 3.8E+02 0.0083 28.9 22.5 69 109-191 75-143 (910)
58 TIGR02658 TTQ_MADH_Hv methylam 48.2 2.7E+02 0.0058 27.0 24.2 74 113-190 40-125 (352)
59 PRK14131 N-acetylneuraminic ac 47.6 2.7E+02 0.0059 27.0 15.4 18 173-190 131-148 (376)
60 TIGR02658 TTQ_MADH_Hv methylam 47.4 2.7E+02 0.0059 26.9 11.9 75 271-350 40-125 (352)
61 PF04841 Vps16_N: Vps16, N-ter 44.8 3.2E+02 0.007 27.0 22.0 69 111-188 81-153 (410)
62 TIGR01062 parC_Gneg DNA topois 43.5 4.5E+02 0.0098 28.3 15.0 161 171-357 493-661 (735)
63 PF06739 SBBP: Beta-propeller 42.3 31 0.00066 21.3 2.6 18 333-350 15-32 (38)
64 KOG0293 WD40 repeat-containing 42.0 3.5E+02 0.0076 26.7 11.2 71 269-350 396-470 (519)
65 TIGR03300 assembly_YfgL outer 40.7 3.4E+02 0.0073 26.1 13.1 57 278-347 320-376 (377)
66 TIGR03548 mutarot_permut cycli 40.6 2.3E+02 0.005 26.7 9.7 18 121-138 116-133 (323)
67 PF06881 Elongin_A: RNA polyme 40.6 20 0.00044 28.1 2.0 49 9-63 3-51 (109)
68 PHA02790 Kelch-like protein; P 40.6 2.1E+02 0.0044 29.0 9.7 15 176-190 357-371 (480)
69 TIGR03547 muta_rot_YjhT mutatr 39.6 3.4E+02 0.0073 25.8 10.9 17 121-137 110-127 (346)
70 PF09372 PRANC: PRANC domain; 39.3 18 0.0004 27.6 1.5 25 9-35 71-95 (97)
71 TIGR03300 assembly_YfgL outer 38.5 3.7E+02 0.0079 25.8 13.3 15 279-293 362-376 (377)
72 KOG1240 Protein kinase contain 38.5 6.5E+02 0.014 28.7 19.9 118 111-242 1049-1180(1431)
73 PF03785 Peptidase_C25_C: Pept 37.8 43 0.00093 24.6 3.0 42 364-410 7-49 (81)
74 KOG0278 Serine/threonine kinas 37.0 3.4E+02 0.0073 25.0 10.4 40 203-242 132-172 (334)
75 KOG2280 Vacuolar assembly/sort 36.9 5.6E+02 0.012 27.5 15.8 67 164-240 85-152 (829)
76 PF02239 Cytochrom_D1: Cytochr 36.8 4.1E+02 0.0088 25.8 16.9 112 113-240 29-155 (369)
77 KOG1900 Nuclear pore complex, 36.7 7E+02 0.015 28.6 17.3 160 176-354 93-276 (1311)
78 smart00442 FGF Acidic and basi 36.4 2.3E+02 0.0049 22.8 8.5 65 270-346 3-67 (126)
79 PF12341 DUF3639: Protein of u 35.8 87 0.0019 17.8 3.8 22 269-290 2-23 (27)
80 KOG1034 Transcriptional repres 35.6 85 0.0018 29.8 5.4 56 177-241 324-381 (385)
81 PRK05560 DNA gyrase subunit A; 35.6 6.2E+02 0.013 27.6 22.9 212 121-351 549-773 (805)
82 TIGR01063 gyrA DNA gyrase, A s 34.7 6.4E+02 0.014 27.5 23.7 210 121-350 547-769 (800)
83 TIGR03548 mutarot_permut cycli 33.4 4.1E+02 0.0089 24.9 13.7 18 173-191 116-133 (323)
84 PF13418 Kelch_4: Galactose ox 33.1 45 0.00098 21.3 2.5 18 278-295 3-20 (49)
85 KOG1408 WD40 repeat protein [F 32.6 6.5E+02 0.014 26.9 12.4 29 213-241 215-247 (1080)
86 PLN03215 ascorbic acid mannose 30.2 2.4E+02 0.0051 27.6 7.7 59 114-188 163-225 (373)
87 PRK13979 DNA topoisomerase IV 29.9 8.3E+02 0.018 27.3 20.8 128 113-250 554-696 (957)
88 KOG1034 Transcriptional repres 29.8 1.5E+02 0.0032 28.3 5.9 58 336-404 323-382 (385)
89 COG4257 Vgb Streptogramin lyas 29.6 2.6E+02 0.0056 26.2 7.3 106 112-240 94-205 (353)
90 KOG0291 WD40-repeat-containing 29.1 7.5E+02 0.016 26.6 22.8 120 113-246 300-425 (893)
91 PF03785 Peptidase_C25_C: Pept 29.1 1.5E+02 0.0031 21.9 4.6 39 104-142 9-49 (81)
92 cd00058 FGF Acidic and basic f 27.4 3.2E+02 0.007 21.8 7.7 61 273-346 2-63 (123)
93 PF00167 FGF: Fibroblast growt 26.3 3.3E+02 0.0071 21.5 8.9 65 271-347 2-66 (122)
94 PF07646 Kelch_2: Kelch motif; 25.9 74 0.0016 20.4 2.5 17 121-137 4-20 (49)
95 PF10168 Nup88: Nuclear pore c 25.7 8.6E+02 0.019 26.2 20.2 118 122-240 34-176 (717)
96 KOG1274 WD40 repeat protein [G 25.0 9.4E+02 0.02 26.4 20.3 37 153-190 48-86 (933)
97 PF04762 IKI3: IKI3 family; I 23.6 1E+03 0.023 26.4 24.0 47 280-350 593-639 (928)
98 PRK13979 DNA topoisomerase IV 23.5 1.1E+03 0.023 26.5 17.8 130 164-303 553-696 (957)
99 PF08450 SGL: SMP-30/Gluconola 23.1 5.3E+02 0.012 22.9 11.0 17 279-295 186-202 (246)
100 KOG2120 SCF ubiquitin ligase, 22.8 40 0.00087 31.7 1.0 44 10-57 98-141 (419)
101 PHA03092 semaphorin-like prote 22.6 1.4E+02 0.0031 23.3 3.7 32 340-371 40-71 (134)
102 KOG1274 WD40 repeat protein [G 22.2 1.1E+03 0.023 26.0 14.9 37 205-242 47-85 (933)
103 PF08450 SGL: SMP-30/Gluconola 21.6 5.7E+02 0.012 22.6 10.0 16 226-241 186-201 (246)
104 cd00200 WD40 WD40 domain, foun 21.4 5.3E+02 0.011 22.2 27.4 186 112-350 11-207 (289)
105 KOG0316 Conserved WD40 repeat- 21.1 6.4E+02 0.014 23.0 14.5 48 127-187 121-170 (307)
106 cd00200 WD40 WD40 domain, foun 21.1 5.4E+02 0.012 22.1 30.0 51 127-190 71-123 (289)
107 KOG4441 Proteins containing BT 20.9 9.6E+02 0.021 24.9 17.8 24 383-406 509-532 (571)
108 PF13938 DUF4213: Domain of un 20.8 1.3E+02 0.0029 22.3 3.3 23 213-235 9-31 (87)
109 PLN02193 nitrile-specifier pro 20.7 8.7E+02 0.019 24.4 18.9 192 172-403 167-384 (470)
No 1
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=7.8e-48 Score=360.79 Aligned_cols=325 Identities=23% Similarity=0.276 Sum_probs=257.5
Q ss_pred hhccceeeccCccccceeeecccCccccceeeeeccccccceeecC----CCceEEEecCCeeEEE-ECCcEEEEeCCCC
Q 015253 65 CALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETS----AGNMQITTGRYHTLLI-SNSSVFSCGSSLC 139 (410)
Q Consensus 65 ~~~~~~y~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~p~~v~~~----~~i~~ia~G~~h~~~l-~~g~vy~wG~n~~ 139 (410)
..+..+|. ||.|...+|+..+.+.. ...|.+.+.. ..|++++||+.|+++| +||+||+||.|..
T Consensus 65 ~~~~~v~~-~Gsn~~~eLGlg~de~~----------~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~ 133 (476)
T COG5184 65 VKMASVYS-WGSNGMNELGLGNDETK----------VDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDD 133 (476)
T ss_pred hheeeeEE-EecCcceeeccCCchhc----------ccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcc
Confidence 44677888 88887777765333211 1223333333 5699999999999999 9999999999999
Q ss_pred CccCCCC---------------CCCceeceeeecCCC----CCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCC
Q 015253 140 GVLGHGP---------------ETTQCVSFTRINFPS----AAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDT 200 (410)
Q Consensus 140 gqlG~~~---------------~~~~~~~p~~v~~~~----~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~ 200 (410)
|+||... .......|..++... ..+|++++||.+++++|+++|+||+||....+.++.+..
T Consensus 134 G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~ 213 (476)
T COG5184 134 GALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSY 213 (476)
T ss_pred cccccccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccc
Confidence 9999776 111234566666522 237999999999999999999999999998888887743
Q ss_pred CC-----ceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEE
Q 015253 201 NR-----PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA 275 (410)
Q Consensus 201 ~~-----~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia 275 (410)
.. ....|..+. ...|+++++|.+|.++|+++|+||+||+|..||||.........+..+..+.....|+.|+
T Consensus 214 ~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~va 290 (476)
T COG5184 214 KNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVA 290 (476)
T ss_pred cccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcc
Confidence 21 224444443 4578999999999999999999999999999999999888887777777766656789999
Q ss_pred eCCCeEEEEECCCcEEEEeCCCCcccCCCCCC----CccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCC
Q 015253 276 AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH----DELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351 (410)
Q Consensus 276 ~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~----~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~ 351 (410)
||.+|++||+++|++|+||.|-+||||.+... ....|.....+ .+..|..|++|..|+++|..+|.||+||++.
T Consensus 291 cG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~--~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~ 368 (476)
T COG5184 291 CGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLL--SGVTICSISAGESHSLILRKDGTLYAFGRGD 368 (476)
T ss_pred cCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccC--CCceEEEEecCcceEEEEecCceEEEecCCc
Confidence 99999999999999999999999999998221 11233333333 3446899999999999999999999999999
Q ss_pred CCCCCCCC--CCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCCCEEEeeeCCCCCC
Q 015253 352 CGALGHGD--EIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQA 410 (410)
Q Consensus 352 ~gqLG~g~--~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~~gQ~ 410 (410)
.+|||..+ ...+..|+++.. ..++.+ ++||..|+++.+++|+||+||.++.||.
T Consensus 369 ~~qlg~~~~~~~~~~~~~~ls~--~~~~~~---v~~gt~~~~~~t~~gsvy~wG~ge~gnl 424 (476)
T COG5184 369 RGQLGIQEEITIDVSTPTKLSV--AIKLEQ---VACGTHHNIARTDDGSVYSWGWGEHGNL 424 (476)
T ss_pred cccccCcccceeecCCcccccc--ccceEE---EEecCccceeeccCCceEEecCchhhhc
Confidence 99999988 455556666543 235777 9999999999999999999999998873
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=1.3e-43 Score=332.45 Aligned_cols=284 Identities=24% Similarity=0.310 Sum_probs=233.7
Q ss_pred CCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCC--CCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCccc
Q 015253 120 RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCG 196 (410)
Q Consensus 120 ~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~--~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG 196 (410)
..|...+ .-..||+||+|...|||.+..+.....|+..++. ....|++++||..|+++|++||+||+||.|..|+||
T Consensus 58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lg 137 (476)
T COG5184 58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALG 137 (476)
T ss_pred ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccc
Confidence 4555567 8899999999999999999988876778877766 334899999999999999999999999999999999
Q ss_pred CCC---------------CCCceeccEEecc----cCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCC
Q 015253 197 HRD---------------TNRPIFRPRLVEA----LKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRP 257 (410)
Q Consensus 197 ~~~---------------~~~~~~~p~~v~~----~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~ 257 (410)
... ......+|..|+. ....++++++||++++++|+++|+||+||....+.++.+...+..
T Consensus 138 r~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~ 217 (476)
T COG5184 138 RDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQ 217 (476)
T ss_pred cccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccc
Confidence 876 1123566777765 234479999999999999999999999999999998888544432
Q ss_pred C----ceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCC
Q 015253 258 T----PKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE 333 (410)
Q Consensus 258 ~----p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~ 333 (410)
. ++++... ...|+++++|.+|.++|+++|+||+||+|..||||.........+..+..+- .-..|++|+||.+
T Consensus 218 k~~~~~~p~~v~--~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~vacG~~ 294 (476)
T COG5184 218 KTSIQFTPLKVP--KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVACGKD 294 (476)
T ss_pred cceeeeeeeecC--chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhcccCcc
Confidence 2 3333332 2589999999999999999999999999999999998776666555554332 1124789999999
Q ss_pred eEEEEeCCCCEEEEecCCCCCCCCCCC----CCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCCCEEEeeeCCCCC
Q 015253 334 HVVALDSSGYVYTWGKGYCGALGHGDE----IDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQ 409 (410)
Q Consensus 334 hs~~lt~~G~vy~wG~n~~gqLG~g~~----~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~~gQ 409 (410)
|++||+++|++|+||.|.+||||.++. .....|.....+.++.|.. +++|..|+++|..+|.+|+||.++-+|
T Consensus 295 h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~---is~ge~H~l~L~~~G~l~a~Gr~~~~q 371 (476)
T COG5184 295 HSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICS---ISAGESHSLILRKDGTLYAFGRGDRGQ 371 (476)
T ss_pred eEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEE---EecCcceEEEEecCceEEEecCCcccc
Confidence 999999999999999999999999821 2234466666677777888 999999999999999999999999988
No 3
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=3.8e-42 Score=303.07 Aligned_cols=284 Identities=28% Similarity=0.378 Sum_probs=244.9
Q ss_pred CceEEEec--CCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEe
Q 015253 112 GNMQITTG--RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCG 188 (410)
Q Consensus 112 ~i~~ia~G--~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG 188 (410)
+|.-|++| ..|+++| -+|+.|+||.|..||||+++.. ....|+.|+-....+|++.+||++|+++||++|++|+||
T Consensus 57 ~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k-~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afG 135 (443)
T KOG1427|consen 57 NIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMK-QRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFG 135 (443)
T ss_pred eEEEEecccchhhEEEEecccceeecccCccCccCccchh-hccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEec
Confidence 47778877 4899999 9999999999999999999544 456777777766679999999999999999999999999
Q ss_pred CCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCC-------------
Q 015253 189 DNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD------------- 255 (410)
Q Consensus 189 ~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~------------- 255 (410)
.|.+||||.++....+..|.++.. .+..|+.|+||..|++.|+..+.+.++|.-.|||||+++...
T Consensus 136 eNK~GQlGlgn~~~~v~s~~~~~~-~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e 214 (443)
T KOG1427|consen 136 ENKYGQLGLGNAKNEVESTPLPCV-VSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYE 214 (443)
T ss_pred ccccccccccccccccccCCCccc-cCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeee
Confidence 999999999998766666655443 345689999999999999999999999999999999987643
Q ss_pred -CCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCe
Q 015253 256 -RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH 334 (410)
Q Consensus 256 -~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~h 334 (410)
++.|.-|..+.. ..|++++||.+|+++++++++||+||.+.||+||+-...+...|+.|..|+..+.--.++.||+..
T Consensus 215 ~~pr~~~i~~~dg-vqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~ 293 (443)
T KOG1427|consen 215 AQPRPKAIASLDG-VQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTG 293 (443)
T ss_pred cCCCccccccccc-eeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeeccc
Confidence 345666666665 689999999999999999999999999999999999999999999999998888888899999999
Q ss_pred EEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCCCEEEeeeCCCC
Q 015253 335 VVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDST 408 (410)
Q Consensus 335 s~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~~g 408 (410)
++++.+-|.+|.||.+.. +.+....|.++..+.+..+.. +.|+..|.++ ..|..+.+||....+
T Consensus 294 Sl~v~e~G~Lf~~g~~k~------~ge~~mypkP~~dlsgwnl~~---~~~~~~h~~v-~ad~s~i~wg~~~~g 357 (443)
T KOG1427|consen 294 SLNVAEGGQLFMWGKIKN------NGEDWMYPKPMMDLSGWNLRW---MDSGSMHHFV-GADSSCISWGHAQYG 357 (443)
T ss_pred ceeecccceeEEeecccc------CcccccCCCchhhcCCccCCC---cCccceeeee-ccccccccccccccc
Confidence 999999999999998752 345666788888898888888 9999888765 455689999876544
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=100.00 E-value=5.8e-40 Score=289.27 Aligned_cols=305 Identities=21% Similarity=0.299 Sum_probs=252.4
Q ss_pred ccceeeccCccccceeeecccCccccceeeeeccccccceeecCCC--ceEEEecCCeeEEE-ECCcEEEEeCCCCCccC
Q 015253 67 LHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG--NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLG 143 (410)
Q Consensus 67 ~~~~y~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~--i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG 143 (410)
.++.|+ ||.|+.|||+.. .......|++++.+.+ |++.+||++|+++| ++|.||+||.|.+||||
T Consensus 76 egk~~~-wGRNekGQLGhg-----------D~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlG 143 (443)
T KOG1427|consen 76 EGKCYT-WGRNEKGQLGHG-----------DMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLG 143 (443)
T ss_pred ccceee-cccCccCccCcc-----------chhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccc
Confidence 578888 888988888652 1223345788887775 99999999999999 99999999999999999
Q ss_pred CCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCC-------------CceeccEEe
Q 015253 144 HGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN-------------RPIFRPRLV 210 (410)
Q Consensus 144 ~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~-------------~~~~~p~~v 210 (410)
.++.......|+++.+.. ..|+.|+||..+++.|+..+.+..+|...|||||++... ...+.|..|
T Consensus 144 lgn~~~~v~s~~~~~~~~-~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i 222 (443)
T KOG1427|consen 144 LGNAKNEVESTPLPCVVS-DEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAI 222 (443)
T ss_pred ccccccccccCCCccccC-ccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCcccc
Confidence 998877555555544433 379999999999999999999999999999999998765 234567778
Q ss_pred cccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCC-CCEEEEEeCCCeEEEEECCCc
Q 015253 211 EALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEV-GSVVQIAAGPSYMLAVTGNGV 289 (410)
Q Consensus 211 ~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~-~~i~~ia~G~~h~~~lt~~G~ 289 (410)
..+.+.+|++++||.+|+++++++++||+||.+-||.||+...++.-.|++++.+... .--.++.||+..++.+.+-|.
T Consensus 223 ~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKDEmvpRlik~Fd~~~rg~~~~~~g~t~Sl~v~e~G~ 302 (443)
T KOG1427|consen 223 ASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKDEMVPRLIKVFDRNNRGPPNAILGYTGSLNVAEGGQ 302 (443)
T ss_pred ccccceeeEEEeccCcceeeecCCccEEEeccccccccccccchhhHHHHHHHHhcCCCCCCcceeeecccceeecccce
Confidence 8889999999999999999999999999999999999999999999999998876533 345678999999999999999
Q ss_pred EEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCC--CCccccE
Q 015253 290 VYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE--IDKTLPE 367 (410)
Q Consensus 290 vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~--~~~~~P~ 367 (410)
+|.||.+.. +-.....|.++..+ .+.++..+-|+..|.++ ..|-...+||...+|.++-+.. .....|.
T Consensus 303 Lf~~g~~k~------~ge~~mypkP~~dl--sgwnl~~~~~~~~h~~v-~ad~s~i~wg~~~~g~~lggp~~Qkss~~Pk 373 (443)
T KOG1427|consen 303 LFMWGKIKN------NGEDWMYPKPMMDL--SGWNLRWMDSGSMHHFV-GADSSCISWGHAQYGELLGGPNGQKSSAAPK 373 (443)
T ss_pred eEEeecccc------CcccccCCCchhhc--CCccCCCcCccceeeee-cccccccccccccccccccCccccccccCcc
Confidence 999999874 22334466666555 55678899999999765 5566899999887776654432 3456799
Q ss_pred EecCCCCCceeeeeeEEecCCcEEEEEcC
Q 015253 368 PLSSLKSHLAVQGLSVLAEVCPTIVQEDT 396 (410)
Q Consensus 368 ~v~~~~~~~i~~~~~i~~G~~~t~~l~~~ 396 (410)
++..+.+.++.+ |++|..|+++|.++
T Consensus 374 ~v~~l~~i~v~~---VamGysHs~vivd~ 399 (443)
T KOG1427|consen 374 KVDMLEGIHVMG---VAMGYSHSMVIVDR 399 (443)
T ss_pred ccchhcceeccc---eeeccceEEEEEcc
Confidence 999999999999 99999999999865
No 5
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.96 E-value=3.6e-28 Score=246.76 Aligned_cols=361 Identities=23% Similarity=0.285 Sum_probs=249.3
Q ss_pred cccccccCChhHHHHHHHhCCCC-hhhhhcccccccccCCCCCCCCcccc-chhhhHHHhhhhccceeeccCccccceee
Q 015253 6 RLFSIEELPSHLIFEILTSGRLS-AVDLAHLELTSKTFGGSHGLYPQKFR-SLVDLAASQLCALHSIYAGMSRNVQIELL 83 (410)
Q Consensus 6 ~~~~~~~lp~~i~~~~~~~~~l~-~~dl~~l~~t~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~g~l~ 83 (410)
|.|+.+.-|..--.+-|++-... .+|+..+..-+++++.. +.|+... ......++.-...+++|. .|...+..|+
T Consensus 436 ~~Fs~SnEP~~rrs~rLt~vk~~iq~~~~~~~qL~e~L~~~--~~~qtv~L~~~RE~A~iqa~sGKvYY-aGn~t~~Gl~ 512 (3738)
T KOG1428|consen 436 DSFSPSNEPSSRRSHRLTDVKFTIQGDLQVPHQLPEFLPAN--LHPQTVDLHFTREMAFIQARSGKVYY-AGNGTRFGLF 512 (3738)
T ss_pred ecccCCCCcchhhhhhHHHHHHHHhhhhcChhhchhhhccc--cCchheecccchhhhhhhhcCccEEE-ecCccEEeEE
Confidence 56788888977777777665554 66777788888888765 6664442 222223444466788887 7777777787
Q ss_pred ecccCccccceeeeeccccccceeecCCCceEEEecCCeeEEE---ECCcEEEEeCCCCCccCCCCCCCceeceeeecCC
Q 015253 84 NRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP 160 (410)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~p~~v~~~~~i~~ia~G~~h~~~l---~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~ 160 (410)
.. +++|..+. ...+|++|+.|-+...++ .+|-++.-|+... . ...+...|
T Consensus 513 e~-G~nWmEL~--------------l~~~IVq~SVG~D~~~~~~~A~~G~I~~v~D~k~--------~----~~~Rr~~P 565 (3738)
T KOG1428|consen 513 ET-GNNWMELC--------------LPEPIVQISVGIDTIMFRSGAGHGWIASVDDKKR--------N----GRLRRLVP 565 (3738)
T ss_pred cc-CCceEEec--------------CCCceEEEEeccchhheeeccCcceEEeccCccc--------c----cchhhcCC
Confidence 74 47787762 235799999998777766 6777777664311 0 11111223
Q ss_pred CC-CCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEE
Q 015253 161 SA-AHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHT 239 (410)
Q Consensus 161 ~~-~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~ 239 (410)
.+ .+|+++.+...---+++++|++|+.|.... ........+..+++..|.+++.|..|.++++.+|.||+
T Consensus 566 ~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm---------~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T 636 (3738)
T KOG1428|consen 566 SNRRKIVHVCASGHVYGYVSENGKIFMGGLHTM---------RVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFT 636 (3738)
T ss_pred CCcceeEEEeeeeEEEEEEccCCeEEeecceeE---------EecchHHHhhccccceeehhhccccceeEEEeCCeEEE
Confidence 22 378887665544567899999999996541 11123345667888899999999999999999999999
Q ss_pred eecCCCCccCCCCCCCC-CCcee-------ec------CCCCCCCEEEEEeCCCeEE------EEECCCcEEEEeCCCCc
Q 015253 240 CGSNTHGQLGHGDTLDR-PTPKS-------IA------PLEEVGSVVQIAAGPSYML------AVTGNGVVYSFGSGSNF 299 (410)
Q Consensus 240 wG~n~~gqlG~~~~~~~-~~p~~-------v~------~~~~~~~i~~ia~G~~h~~------~lt~~G~vy~wG~n~~g 299 (410)
||.|+.+|+|.-..... ..|.. +- -+.+ ..-+-..||....- +-.-.|.+..||.++.+
T Consensus 637 ~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~d-t~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~ 715 (3738)
T KOG1428|consen 637 WGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTD-TPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGEST 715 (3738)
T ss_pred EecCCcccccccccccccCCcccccceeecccCCccceeecC-CcchhhhcccccccccccccCCCCCCcccccCCCccc
Confidence 99999999997433221 11111 00 0001 12222223322111 11236777888888776
Q ss_pred ccCCCCC------CC--------------c-------cccEEeec-cccCCccEEEEEecCCeEEEEeCCCCEEEEecCC
Q 015253 300 CLGHGEQ------HD--------------E-------LQPRAIQT-FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351 (410)
Q Consensus 300 qLG~g~~------~~--------------~-------~~p~~i~~-~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~ 351 (410)
.|-.|-- .. . ..|..+.. -.....++.+|+||..|+++|.+|++||++|+|.
T Consensus 716 C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~ 795 (3738)
T KOG1428|consen 716 CLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNC 795 (3738)
T ss_pred ceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCc
Confidence 6543210 00 0 11222221 1124568999999999999999999999999999
Q ss_pred CCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCCCEEEeeeCCCCC
Q 015253 352 CGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQ 409 (410)
Q Consensus 352 ~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~~gQ 409 (410)
+||||+|+......|+.|..+.+..+++ |++|.+||+++..||+||.+|..+.||
T Consensus 796 HGQLG~GDt~Sk~~Pq~V~~~~~t~~vQ---VaAGSNHT~l~~~DGsVFTFGaF~KGQ 850 (3738)
T KOG1428|consen 796 HGQLGVGDTLSKNTPQQVILPSDTVIVQ---VAAGSNHTILRANDGSVFTFGAFGKGQ 850 (3738)
T ss_pred ccccCcCccccCCCcceEEcCCCCceEE---EecCCCceEEEecCCcEEEeccccCcc
Confidence 9999999999999999999999999999 999999999999999999999999998
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=4.4e-27 Score=231.21 Aligned_cols=269 Identities=23% Similarity=0.259 Sum_probs=208.1
Q ss_pred ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCC--CEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCce
Q 015253 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPI 204 (410)
Q Consensus 127 ~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~--~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~ 204 (410)
.-.+||+||.|.+..||.++... ...|..+.+.... -+.+|+.+..|++++++.|+||++|...-|.||+++. ...
T Consensus 140 ~pndvy~wG~N~N~tLGign~~~-~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde-q~~ 217 (1267)
T KOG0783|consen 140 LPNDVYGWGTNVNNTLGIGNGKE-PSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE-QYN 217 (1267)
T ss_pred CccceeEecccccccccccCCCC-CCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcc-ccc
Confidence 56889999999999999998765 4477788776544 5788999999999999999999999999999999965 678
Q ss_pred eccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCC-CCCceeecCC--CCCCCEEEEEeCCCeE
Q 015253 205 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD-RPTPKSIAPL--EEVGSVVQIAAGPSYM 281 (410)
Q Consensus 205 ~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~-~~~p~~v~~~--~~~~~i~~ia~G~~h~ 281 (410)
..|++|+.+.+.+|.+|++...|+++||++|.||+||.|..+|||..+... ...|.+|... .....|+.|+||..|+
T Consensus 218 ~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hs 297 (1267)
T KOG0783|consen 218 FIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHS 297 (1267)
T ss_pred ccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhccccee
Confidence 899999999999999999999999999999999999999999999865543 3455555432 2224799999999999
Q ss_pred EEEECCCcEEEEeCCCCcccCCCCCCC-ccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCC
Q 015253 282 LAVTGNGVVYSFGSGSNFCLGHGEQHD-ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDE 360 (410)
Q Consensus 282 ~~lt~~G~vy~wG~n~~gqLG~g~~~~-~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~ 360 (410)
++-|+. .||+||.|. ||||..+... ...|+.+.. ....|.-|+|....+++++.++.+|++-+-..-.+ ...
T Consensus 298 Vawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~---~~~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~--~~n 370 (1267)
T KOG0783|consen 298 VAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAG---LLSPVIHVVATTRATVCLLQNNSIIAFADYNQVKL--PFN 370 (1267)
T ss_pred eeeecc-eEEEecccC-ceecCCCCCceeecchhhcc---cccceEEEEecCccEEEEecCCcEEEEecccceec--Ccc
Confidence 999965 799999985 9999876643 346765533 34489999999999999999999999875332221 111
Q ss_pred CCccccEEecC--CC--CCceeeeeeEEecCCcEEEEEcCCCEEEeeeCCC
Q 015253 361 IDKTLPEPLSS--LK--SHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDS 407 (410)
Q Consensus 361 ~~~~~P~~v~~--~~--~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~~ 407 (410)
.....-..|.. ++ -..+.+ ..+....-+++++-|+||.|-.+.+
T Consensus 371 ~~~lks~~V~gg~l~~~~~~~~k---~~a~~~kll~lte~g~Vy~w~s~ns 418 (1267)
T KOG0783|consen 371 VDFLKSLKVTGGPLSLTRFNVRK---LLASENKLLVLTELGEVYEWDSKNS 418 (1267)
T ss_pred hhccceeEEecCccchhhhhhhh---cchhhhheeeeccCCeEEEEecCCC
Confidence 11112222221 11 112333 5566677889999999999987654
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.94 E-value=1.1e-26 Score=228.35 Aligned_cols=301 Identities=20% Similarity=0.241 Sum_probs=216.6
Q ss_pred ceeeecccCccccceeeeeccccccceeecCCC----ceEEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceece
Q 015253 80 IELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG----NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSF 154 (410)
Q Consensus 80 g~l~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~----i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p 154 (410)
..||.||.+....++.........|..|...++ +.+|+.+..|++++ +.|+||++|.+.-|+||.|+... ...|
T Consensus 142 ndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~-~~iP 220 (1267)
T KOG0783|consen 142 NDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQY-NFIP 220 (1267)
T ss_pred cceeEecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcccc-cccc
Confidence 445555555444454444555666777776665 88999999999999 99999999999999999995544 4466
Q ss_pred eeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccc--CCC-ceEEEEecCCeEEEE
Q 015253 155 TRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL--KGV-PCKQVTAGLNFTGFL 231 (410)
Q Consensus 155 ~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~--~~~-~i~~i~~G~~~s~~l 231 (410)
++++.....+|.+|++...|+++||++|-||+||.|.++|||..+.......|..|... ++. .|+.|++|..|+++.
T Consensus 221 krV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iIgvaAg~~hsVaw 300 (1267)
T KOG0783|consen 221 KRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQIIGVAAGKSHSVAW 300 (1267)
T ss_pred cccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhhhhhcccceeeee
Confidence 66777666799999999999999999999999999999999998887666677766543 333 689999999999999
Q ss_pred EcCCcEEEeecCCCCccCCCCCCC-CCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCcc
Q 015253 232 TIRGHVHTCGSNTHGQLGHGDTLD-RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDEL 310 (410)
Q Consensus 232 t~~G~v~~wG~n~~gqlG~~~~~~-~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~ 310 (410)
++. .||+||.|. ||||..+... ..+|+.+.... ..|.-++|....++++++++.+|++-.-....+-. .....
T Consensus 301 t~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~~--~~v~~v~a~~~ATVc~~~~~~i~~~ady~~~k~~~--n~~~l 374 (1267)
T KOG0783|consen 301 TDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGLL--SPVIHVVATTRATVCLLQNNSIIAFADYNQVKLPF--NVDFL 374 (1267)
T ss_pred ecc-eEEEecccC-ceecCCCCCceeecchhhcccc--cceEEEEecCccEEEEecCCcEEEEecccceecCc--chhcc
Confidence 955 999999985 9999766543 46776664433 57999999999999999999999986533222211 11111
Q ss_pred ccEEeec--cccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCC
Q 015253 311 QPRAIQT--FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVC 388 (410)
Q Consensus 311 ~p~~i~~--~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~ 388 (410)
....|.. +.....++.+..+...--+++|+-|+||.|-.+..- -......|.++- .|.+ |+--.+
T Consensus 375 ks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~-----~~~c~ftp~r~~-----~isd---Ia~~~N 441 (1267)
T KOG0783|consen 375 KSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST-----RTSCKFTPLRIF-----EISD---IAWTAN 441 (1267)
T ss_pred ceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc-----eeeeecccceee-----ehhh---hhhccc
Confidence 1122221 111123566677777788999999999999865411 111223344432 2334 665668
Q ss_pred cEEEEEcCCCEE
Q 015253 389 PTIVQEDTRSCS 400 (410)
Q Consensus 389 ~t~~l~~~g~v~ 400 (410)
..+++++||..|
T Consensus 442 ~~~~~t~dGc~~ 453 (1267)
T KOG0783|consen 442 SLILCTRDGCWK 453 (1267)
T ss_pred eEEEEecCccee
Confidence 888999999433
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.89 E-value=9.3e-22 Score=200.80 Aligned_cols=272 Identities=19% Similarity=0.263 Sum_probs=179.4
Q ss_pred CCCceEEEecCCeeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEE
Q 015253 110 SAGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTC 187 (410)
Q Consensus 110 ~~~i~~ia~G~~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~w 187 (410)
.++|+.+ |+..|.+-. +||++|..|-...- ... ....+.-..+.-|.+++-|..|.++++.+|+||.|
T Consensus 568 ~rKIv~v-~~s~~VY~~vSenGkifM~G~~tm~---~n~------SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~ 637 (3738)
T KOG1428|consen 568 RRKIVHV-CASGHVYGYVSENGKIFMGGLHTMR---VNV------SSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTW 637 (3738)
T ss_pred cceeEEE-eeeeEEEEEEccCCeEEeecceeEE---ecc------hHHHhhccccceeehhhccccceeEEEeCCeEEEE
Confidence 3457776 455565544 99999999853210 000 01112222334689999999999999999999999
Q ss_pred eCCCCCcccCCCCCCceeccEEecc-------------cCCCceEEEEecCCeEEEE------EcCCcEEEeecCCCCcc
Q 015253 188 GDNSSFCCGHRDTNRPIFRPRLVEA-------------LKGVPCKQVTAGLNFTGFL------TIRGHVHTCGSNTHGQL 248 (410)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~~v~~-------------~~~~~i~~i~~G~~~s~~l------t~~G~v~~wG~n~~gql 248 (410)
|.|+.+|||.-........|+.-.. +.+..-+...||.-...-+ .-.|.+..+|.++.+.+
T Consensus 638 GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~ 717 (3738)
T KOG1428|consen 638 GLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCL 717 (3738)
T ss_pred ecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccce
Confidence 9999999997655433333332211 1122222233332211111 12466777777666544
Q ss_pred CCC--------CCCC------------CCC-------ceeec--CCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCc
Q 015253 249 GHG--------DTLD------------RPT-------PKSIA--PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNF 299 (410)
Q Consensus 249 G~~--------~~~~------------~~~-------p~~v~--~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~g 299 (410)
-.| .... ... |..|. .-+...++.+|+||.+|+++|.+|++||++|+|-+|
T Consensus 718 ~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HG 797 (3738)
T KOG1428|consen 718 RCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHG 797 (3738)
T ss_pred eccccccccCcCCcCCCCHHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCccc
Confidence 211 1110 011 22222 112225899999999999999999999999999999
Q ss_pred ccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCC---ccccEEecCCCCCc
Q 015253 300 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEID---KTLPEPLSSLKSHL 376 (410)
Q Consensus 300 qLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~---~~~P~~v~~~~~~~ 376 (410)
|||.|+......|+++..+ .+..+++|++|.+|++++..||+||++|.-..|||+..-.+. ...|.++..+....
T Consensus 798 QLG~GDt~Sk~~Pq~V~~~--~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f 875 (3738)
T KOG1428|consen 798 QLGVGDTLSKNTPQQVILP--SDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGF 875 (3738)
T ss_pred ccCcCccccCCCcceEEcC--CCCceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCCccc
Confidence 9999999999999999876 455899999999999999999999999999999999864332 23588887654322
Q ss_pred eeeeeeEEecCCcEEEE
Q 015253 377 AVQGLSVLAEVCPTIVQ 393 (410)
Q Consensus 377 i~~~~~i~~G~~~t~~l 393 (410)
-....+|.+.+..+++-
T Consensus 876 ~~~A~WIGAdGDss~i~ 892 (3738)
T KOG1428|consen 876 NAFAGWIGADGDSSIIH 892 (3738)
T ss_pred cccceeeccCCCcceee
Confidence 22222366666666553
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.32 E-value=1.9e-12 Score=88.15 Aligned_cols=50 Identities=32% Similarity=0.519 Sum_probs=47.3
Q ss_pred CCCEEEEecCCCCCCC-CCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEE
Q 015253 341 SGYVYTWGKGYCGALG-HGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQ 393 (410)
Q Consensus 341 ~G~vy~wG~n~~gqLG-~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l 393 (410)
||+||+||.|.+|||| .++......|++|+.+.+.++++ |+||..||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~---va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQ---VACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEE---EEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEE---EEeCcceEEEC
Confidence 6999999999999999 88888899999999999999999 99999999987
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.31 E-value=4.1e-12 Score=86.48 Aligned_cols=51 Identities=31% Similarity=0.376 Sum_probs=46.8
Q ss_pred CCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEE
Q 015253 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL 231 (410)
Q Consensus 181 ~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~l 231 (410)
||+||+||.|.+||||..........|++++.+.+.+|++|+||..|+++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 699999999999999955555889999999999999999999999999987
No 11
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5.3e-14 Score=140.95 Aligned_cols=189 Identities=28% Similarity=0.349 Sum_probs=145.6
Q ss_pred eecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCC
Q 015253 156 RINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRG 235 (410)
Q Consensus 156 ~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G 235 (410)
.+......+|.+++||.+|+++++..|+++.||.|.+||+|.+....... |.+++.+.+.+..+|++|..|+++++.
T Consensus 7 ~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~-p~~~~sl~g~p~a~v~~g~~hs~~lS~-- 83 (850)
T KOG0941|consen 7 LVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAK-PEPVESLKGVPLAQVSAGEAHSFALSS-- 83 (850)
T ss_pred HHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCC-CccchhhcCCcHHHHhcCCCcchhhhh--
Confidence 33344445899999999999999999999999999999999995544444 999999999999999999999999986
Q ss_pred cEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEe
Q 015253 236 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAI 315 (410)
Q Consensus 236 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i 315 (410)
|+++++++|.++++|....+|+|+....+...|..+
T Consensus 84 --------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v 119 (850)
T KOG0941|consen 84 --------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLV 119 (850)
T ss_pred --------------------------------------------chhhcchhccccccCCcccccccccccccccccHHH
Confidence 899999999999999999999999777777777776
Q ss_pred eccccCCccEEEEEecCCeEEEE-eCCCCEEEEecCCCCCCCCCCCCCccccEEecC---CCCCceeeeeeEEecCCcEE
Q 015253 316 QTFRRKGIHVVRVSAGDEHVVAL-DSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS---LKSHLAVQGLSVLAEVCPTI 391 (410)
Q Consensus 316 ~~~~~~~~~i~~i~~G~~hs~~l-t~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~---~~~~~i~~~~~i~~G~~~t~ 391 (410)
... .+..+..|+||..|+.+. ..-|++|..|.+..|. +.-.....+.+... ..+..+.. +.+|+..++
T Consensus 120 ~e~--i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~~sGk---~~i~s~s~~~~l~~~d~~~~~~~~~---~~~g~dq~~ 191 (850)
T KOG0941|consen 120 LEL--IGSRVTRIACVRGHTLAIVPRLGQSFSFGKGASGK---GVIVSLSGEDLLRDHDSEKDHRCSL---AFAGGDQTF 191 (850)
T ss_pred HHH--HhhhhHHHHHHHHHHHhhhhhhcceeecccCCCCC---ceeeccchhhhcccccHHHHHHHHH---HhcCCCceE
Confidence 654 455899999999999886 5668999999887761 00001111111111 11223444 778999999
Q ss_pred EEEcCCCE
Q 015253 392 VQEDTRSC 399 (410)
Q Consensus 392 ~l~~~g~v 399 (410)
.+...+.-
T Consensus 192 ~l~~~~~~ 199 (850)
T KOG0941|consen 192 SLSSKGEN 199 (850)
T ss_pred EEEeeccc
Confidence 88766543
No 12
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.6e-13 Score=137.59 Aligned_cols=152 Identities=26% Similarity=0.323 Sum_probs=133.2
Q ss_pred ccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEE
Q 015253 206 RPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVT 285 (410)
Q Consensus 206 ~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt 285 (410)
.|+.+..+.-.+|.+++||.+|+++++..|+++.||.|.+||+|.+.......|..++.+.+ .+..+|+||.+|++++.
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g-~p~a~v~~g~~hs~~lS 82 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKG-VPLAQVSAGEAHSFALS 82 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcC-CcHHHHhcCCCcchhhh
Confidence 34445555566789999999999999999999999999999999985555555988988877 58999999999999988
Q ss_pred CCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccc
Q 015253 286 GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTL 365 (410)
Q Consensus 286 ~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~ 365 (410)
. |+++++.+|.++++|....||+|+....+...
T Consensus 83 ~-----------------------------------------------~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~ 115 (850)
T KOG0941|consen 83 S-----------------------------------------------HTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL 115 (850)
T ss_pred h-----------------------------------------------chhhcchhccccccCCcccccccccccccccc
Confidence 6 99999999999999999999999987788888
Q ss_pred cEEecCCCCCceeeeeeEEecCCcEEEEE-cCCCEEEeeeCCCC
Q 015253 366 PEPLSSLKSHLAVQGLSVLAEVCPTIVQE-DTRSCSDIICHDST 408 (410)
Q Consensus 366 P~~v~~~~~~~i~~~~~i~~G~~~t~~l~-~~g~v~~wG~~~~g 408 (410)
|..+..+-+..+.+ |+||-.|+++.. .-|++|..|.+.+|
T Consensus 116 ~~~v~e~i~~~~t~---ia~~~~ht~a~v~~l~qsf~~~~~~sG 156 (850)
T KOG0941|consen 116 PLLVLELIGSRVTR---IACVRGHTLAIVPRLGQSFSFGKGASG 156 (850)
T ss_pred cHHHHHHHhhhhHH---HHHHHHHHHhhhhhhcceeecccCCCC
Confidence 98888777888999 999999999876 55899999999886
No 13
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.16 E-value=5e-11 Score=70.79 Aligned_cols=30 Identities=43% Similarity=0.810 Sum_probs=26.0
Q ss_pred EEEEEecCCeEEEEeCCCCEEEEecCCCCC
Q 015253 325 VVRVSAGDEHVVALDSSGYVYTWGKGYCGA 354 (410)
Q Consensus 325 i~~i~~G~~hs~~lt~~G~vy~wG~n~~gq 354 (410)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 689999999999999999999999999997
No 14
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.15 E-value=6.6e-11 Score=70.28 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=26.1
Q ss_pred EEEEEecCCeeEEEEcCCcEEEEeCCCCCc
Q 015253 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFC 194 (410)
Q Consensus 165 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gq 194 (410)
|++|+||..|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999997
No 15
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.33 E-value=7.5e-05 Score=49.39 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=29.9
Q ss_pred cccCChhHHHHHHHhCCCChhhhhcccccccccCCC
Q 015253 10 IEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (410)
Q Consensus 10 ~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~ 45 (410)
+.+||+||+..|| .+|++.|+.++..+||.|...
T Consensus 1 i~~LP~Eil~~If--~~L~~~dl~~~~~vcr~w~~~ 34 (47)
T PF12937_consen 1 ISSLPDEILLEIF--SYLDPRDLLRLSLVCRRWRRI 34 (47)
T ss_dssp CCCS-HHHHHHHH--TTS-HHHHHHHTTSSHHHHHH
T ss_pred ChHhHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999 999999999999999999876
No 16
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=96.08 E-value=0.001 Score=44.06 Aligned_cols=36 Identities=36% Similarity=0.596 Sum_probs=29.3
Q ss_pred cccccCChhHHHHHHHhCCCChhhhhcccccccccCCC
Q 015253 8 FSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (410)
Q Consensus 8 ~~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~ 45 (410)
+++.+||+|++.+|+ .+|+..|+.++..+|+.|...
T Consensus 1 ~~~~~LP~~il~~Il--~~l~~~~~~~l~~vsk~~~~~ 36 (48)
T PF00646_consen 1 FPLSDLPDEILQEIL--SYLDPKDLLRLSLVSKRWRSL 36 (48)
T ss_dssp -HHHHS-HHHHHHHH--HTS-HHHHHHHCTT-HHHHHH
T ss_pred CCHHHCCHHHHHHHH--HHCcHHHHHHHHHHhhHHHHH
Confidence 357899999999999 899999999999999998764
No 17
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=95.49 E-value=0.81 Score=45.73 Aligned_cols=108 Identities=27% Similarity=0.348 Sum_probs=71.7
Q ss_pred ecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-CeEEEEECCCcEEE-EeCCCCcc
Q 015253 223 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVYS-FGSGSNFC 300 (410)
Q Consensus 223 ~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~-~h~~~lt~~G~vy~-wG~n~~gq 300 (410)
.|.....||..+|++|-= +|-....+.-...+.+....++.+|++|. .-..+++.+|.|+. -|-....+
T Consensus 190 ~g~~~awAI~s~Gd~y~R---------tGvs~~~P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR---------TGVSVDRPCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEEe---------ccccCCCCCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence 455566678888888742 22222222222333333324699999999 77889999998875 57666666
Q ss_pred cCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEE
Q 015253 301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTW 347 (410)
Q Consensus 301 LG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~w 347 (410)
.|..-. +..+|+... .++.|+.|...--+||.+|.+|.=
T Consensus 261 ~GdsWk-dI~tP~~a~-------~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 261 EGDSWK-DIVTPRQAL-------EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCchhh-hccCccccc-------ceEEEEeccceEEEEecCCcEEEE
Confidence 654322 444554432 388999999999999999999853
No 18
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=95.43 E-value=0.0036 Score=39.57 Aligned_cols=31 Identities=32% Similarity=0.516 Sum_probs=29.1
Q ss_pred CChhHHHHHHHhCCCChhhhhcccccccccCCC
Q 015253 13 LPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (410)
Q Consensus 13 lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~ 45 (410)
||+|++..|+ .+|++.|+.++..+|+.|...
T Consensus 1 lP~~ll~~I~--~~l~~~d~~~~~~vc~~~~~~ 31 (41)
T smart00256 1 LPDEILEEIL--SKLPPKDLLRLRKVSRRWRSL 31 (41)
T ss_pred CCHHHHHHHH--HcCCHHHHHHHHHHHHHHHHH
Confidence 7999999999 899999999999999998875
No 19
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=94.54 E-value=2.4 Score=42.56 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=69.7
Q ss_pred ecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC-CeeEEEEcCCcEE-EEeCCCCCc
Q 015253 118 TGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-NHAAFVLQSGQVF-TCGDNSSFC 194 (410)
Q Consensus 118 ~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~h~~~lt~~G~vy-~wG~n~~gq 194 (410)
.|..-..|| .+|++|. +-|.....+.-..-+.+. ....+.+|++|. ....+++++|+|+ --|-..+.+
T Consensus 190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~P~GraW~~i~--~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp 260 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYL-------RTGVSVDRPCGRAWKVIC--PYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQNP 260 (705)
T ss_pred CCceEEEEEecCCcEEE-------eccccCCCCCCceeeecC--CCCccceEeecCcceEEEEeeCCcEEEEecccccCC
Confidence 455666677 8888885 233333322111122222 222689999998 7778999999984 567777766
Q ss_pred ccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEe
Q 015253 195 CGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240 (410)
Q Consensus 195 lG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~w 240 (410)
.|..-. .+..|+... .++.|+.|....-+|+.+|++|.=
T Consensus 261 ~GdsWk--dI~tP~~a~-----~~v~iSvGt~t~Waldndg~lwfr 299 (705)
T KOG3669|consen 261 EGDSWK--DIVTPRQAL-----EPVCISVGTQTLWALDNDGNLWFR 299 (705)
T ss_pred CCchhh--hccCccccc-----ceEEEEeccceEEEEecCCcEEEE
Confidence 665332 344444332 279999999999999999999853
No 20
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=89.57 E-value=0.029 Score=59.86 Aligned_cols=130 Identities=14% Similarity=0.031 Sum_probs=85.3
Q ss_pred CCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCC--CCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEE
Q 015253 214 KGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHG--DTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVY 291 (410)
Q Consensus 214 ~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~--~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy 291 (410)
+..+++.|.+-.+..++|..+|++|.|-+...--|... -..+...|.--..-...++|+.+++..-..-++|++|+|-
T Consensus 372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla 451 (3015)
T KOG0943|consen 372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA 451 (3015)
T ss_pred CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence 34578888888888999999999999988665444321 1122222322211112268999999999999999999999
Q ss_pred EEeCCCCcccCCCCCC--CccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecC
Q 015253 292 SFGSGSNFCLGHGEQH--DELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 292 ~wG~n~~gqLG~g~~~--~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n 350 (410)
+|=. .+|.+... ....-++++ ..+..+++--|...|.+|...+..+|-||--
T Consensus 452 sWlD----EcgagV~fkLa~ea~Tkie---ed~~maVqd~~~adhlaAf~~dniihWcGiV 505 (3015)
T KOG0943|consen 452 SWLD----ECGAGVAFKLAHEAQTKIE---EDGEMAVQDHCCADHLAAFLEDNIIHWCGIV 505 (3015)
T ss_pred hHHh----hhhhhhhhhhhhhhhhhhh---hhhHHHHHHHHHHHHHHHHhhhceeeEEeee
Confidence 9932 11211111 111122222 2445677778889999999999999999953
No 21
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=88.91 E-value=18 Score=32.84 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=56.4
Q ss_pred EEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEE--EeCCCeEEEEECCCcEEEEeCC
Q 015253 219 KQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSG 296 (410)
Q Consensus 219 ~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i--a~G~~h~~~lt~~G~vy~wG~n 296 (410)
+...|-..-.+-=.+||.+-.|-... +. .++..... .+|..| --...|.+.-+.+|.|+.|-..
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~---~~--------~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRS---LS--------CQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccC---cc--------cchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 34444444444456788888884322 11 11111111 223333 3344566677889999999654
Q ss_pred CCcccCCCCCCCccccEEeeccccCCccEEEEEecCC--eEEEEeCCCCEEEEec
Q 015253 297 SNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HVVALDSSGYVYTWGK 349 (410)
Q Consensus 297 ~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~--hs~~lt~~G~vy~wG~ 349 (410)
.+ .......|.. ...|.+++...+ .-++.+..|+.|+|-.
T Consensus 155 ~~------~c~~~liPe~-------~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 155 EN------SCTHELIPED-------DTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred CC------ccccccCCCC-------CcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 32 1222233322 225666666654 4567789999999985
No 22
>PHA03098 kelch-like protein; Provisional
Probab=88.52 E-value=21 Score=36.62 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=16.2
Q ss_pred cccccCChhHHHHHHHhCCCC
Q 015253 8 FSIEELPSHLIFEILTSGRLS 28 (410)
Q Consensus 8 ~~~~~lp~~i~~~~~~~~~l~ 28 (410)
....+||.+.+..+|.+..|.
T Consensus 144 ~~f~~l~~~~l~~ll~~~~L~ 164 (534)
T PHA03098 144 PDFIYLSKNELIKILSDDKLN 164 (534)
T ss_pred chhhcCCHHHHHHHhcCCCcC
Confidence 356788999999988777764
No 23
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=88.41 E-value=3.1 Score=47.00 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=40.1
Q ss_pred cEEEEE-ecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEec--CCCCCceeeeeeEEecCCcEE-EEEcCCCE
Q 015253 324 HVVRVS-AGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLS--SLKSHLAVQGLSVLAEVCPTI-VQEDTRSC 399 (410)
Q Consensus 324 ~i~~i~-~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~--~~~~~~i~~~~~i~~G~~~t~-~l~~~g~v 399 (410)
.|..++ .+.++.++|++.|++-..= . .+ .|+.++ .+.+ .|.. +++-..|.+ |++.+|++
T Consensus 704 ~i~a~Avv~~~~fvald~qg~lt~h~--k-----~g------~p~~l~~~gl~G-~ik~---l~lD~~~nL~Alt~~G~L 766 (1774)
T PF11725_consen 704 VITAFAVVNDNKFVALDDQGDLTAHQ--K-----PG------RPVPLSRPGLSG-EIKD---LALDEKQNLYALTSTGEL 766 (1774)
T ss_pred cceeEEEEcCCceEEeccCCcccccc--C-----CC------CCccCCCCCCCc-chhh---eeeccccceeEecCCCce
Confidence 344443 3678999999999886532 1 11 144443 3433 5666 888887655 79999999
Q ss_pred EEe
Q 015253 400 SDI 402 (410)
Q Consensus 400 ~~w 402 (410)
|..
T Consensus 767 f~~ 769 (1774)
T PF11725_consen 767 FRL 769 (1774)
T ss_pred eec
Confidence 974
No 24
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=88.18 E-value=0.091 Score=56.30 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=88.2
Q ss_pred CCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCC--CCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEE
Q 015253 269 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQ--HDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346 (410)
Q Consensus 269 ~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~--~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~ 346 (410)
.+++.|.+-++..++|..+|++|.|-+.+.--|...-. .+...|..- .+...+.+|+.+++..-..-++|++|+|.+
T Consensus 374 n~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a-~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 374 NKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAA-FIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccc-eecccCCeeEEeecCceeeeeeecCCchhh
Confidence 68999999899999999999999999987655543211 111223221 122356689999999999999999999999
Q ss_pred EecCCCCCCCCCC--CCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCCCEEEeeeCC
Q 015253 347 WGKGYCGALGHGD--EIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHD 406 (410)
Q Consensus 347 wG~n~~gqLG~g~--~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~ 406 (410)
|=.- +|.+- .-....-+++ ...+..+++ .-|-..|+++...|+.+|-||---
T Consensus 453 WlDE----cgagV~fkLa~ea~Tki-eed~~maVq---d~~~adhlaAf~~dniihWcGiVP 506 (3015)
T KOG0943|consen 453 WLDE----CGAGVAFKLAHEAQTKI-EEDGEMAVQ---DHCCADHLAAFLEDNIIHWCGIVP 506 (3015)
T ss_pred HHhh----hhhhhhhhhhhhhhhhh-hhhhHHHHH---HHHHHHHHHHHhhhceeeEEeeee
Confidence 9532 11111 1111222333 234566777 777788999999999999999643
No 25
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=87.86 E-value=17 Score=35.73 Aligned_cols=139 Identities=9% Similarity=0.023 Sum_probs=65.5
Q ss_pred cCccccceeeecccCccccceeee-eccccccceeecCCCceEEEecCCeeEEE---ECCcEEEEeCCCCCccCCCCCCC
Q 015253 74 MSRNVQIELLNRCNGNWKRVLRFL-QSVEHSSDIVETSAGNMQITTGRYHTLLI---SNSSVFSCGSSLCGVLGHGPETT 149 (410)
Q Consensus 74 ~~~~~~g~l~~~~~~~~~~~~~~~-~~~~~~p~~v~~~~~i~~ia~G~~h~~~l---~~g~vy~wG~n~~gqlG~~~~~~ 149 (410)
++....|+||.|--. .+.++.++ .+.+ .|+.+.-..+-++++ +||.|.+|=--.- ....
T Consensus 97 ~ag~i~g~lYlWels-sG~LL~v~~aHYQ----------~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l------v~a~ 159 (476)
T KOG0646|consen 97 LAGTISGNLYLWELS-SGILLNVLSAHYQ----------SITCLKFSDDGSHIITGSKDGAVLVWLLTDL------VSAD 159 (476)
T ss_pred EeecccCcEEEEEec-cccHHHHHHhhcc----------ceeEEEEeCCCcEEEecCCCccEEEEEEEee------cccc
Confidence 556678889988433 22232222 1122 355555444444444 8999999953211 0011
Q ss_pred ceeceeeecCCCCC--CEEEEEecCCeeEEEEcCCcEEEEeCCCCCcc---cCCCCCCceeccEEecccCCCceEEEEec
Q 015253 150 QCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCC---GHRDTNRPIFRPRLVEALKGVPCKQVTAG 224 (410)
Q Consensus 150 ~~~~p~~v~~~~~~--~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gql---G~~~~~~~~~~p~~v~~~~~~~i~~i~~G 224 (410)
....+.|+...... .|+++.+|..- .+.+||+-+....-.| ..+..-.....|..+ +-+.+.-+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg-----~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si------~av~lDpa 228 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGG-----TNARLYTASEDRTIKLWDLSLGVLLLTITFPSSI------KAVALDPA 228 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCC-----ccceEEEecCCceEEEEEeccceeeEEEecCCcc------eeEEEccc
Confidence 11134444443333 68888887653 2333443332221110 001110122233222 23455556
Q ss_pred CCeEEEEEcCCcEEEe
Q 015253 225 LNFTGFLTIRGHVHTC 240 (410)
Q Consensus 225 ~~~s~~lt~~G~v~~w 240 (410)
..+.++=+++|.+|..
T Consensus 229 e~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 229 ERVVYIGTEEGKIFQN 244 (476)
T ss_pred ccEEEecCCcceEEee
Confidence 7777777888888754
No 26
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.70 E-value=3.1 Score=47.08 Aligned_cols=117 Identities=9% Similarity=0.070 Sum_probs=69.6
Q ss_pred ecCCCCCCCEEEEE-eCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeE-EEEe
Q 015253 262 IAPLEEVGSVVQIA-AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHV-VALD 339 (410)
Q Consensus 262 v~~~~~~~~i~~ia-~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs-~~lt 339 (410)
|..++. ..|..+| .+.++.++|++.|++-..= ..-.|+.++.... .-.|++|++-..|. .|+|
T Consensus 697 l~Gl~~-~~i~a~Avv~~~~fvald~qg~lt~h~-------------k~g~p~~l~~~gl-~G~ik~l~lD~~~nL~Alt 761 (1774)
T PF11725_consen 697 LEGLED-RVITAFAVVNDNKFVALDDQGDLTAHQ-------------KPGRPVPLSRPGL-SGEIKDLALDEKQNLYALT 761 (1774)
T ss_pred ccCCCc-CcceeEEEEcCCceEEeccCCcccccc-------------CCCCCccCCCCCC-CcchhheeeccccceeEec
Confidence 444442 4555554 3778999999999886632 1112555543322 23799999988865 5689
Q ss_pred CCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCC
Q 015253 340 SSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTR 397 (410)
Q Consensus 340 ~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g 397 (410)
.+|++|.-=.-..-+ +..........++|....+.++.. +.....|.+.+.-++
T Consensus 762 ~~G~Lf~~~k~~WQ~-~~~~~~~~~~W~~v~lP~~~~v~~---l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 762 STGELFRLPKEAWQG-NAEGDQMAAKWQKVALPDEQPVKS---LRTNDDNHLSAQIED 815 (1774)
T ss_pred CCCceeecCHHHhhC-cccCCccccCceeccCCCCCchhh---hhcCCCCceEEEecC
Confidence 999999743211111 111111123445555556666777 888888888877554
No 27
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=87.54 E-value=31 Score=34.11 Aligned_cols=69 Identities=12% Similarity=-0.078 Sum_probs=41.3
Q ss_pred CCEEEEEec-CCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEec--ccCCCceEEEEecCCeEEEEEcCCcEEE
Q 015253 163 AHVVQVSAS-ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE--ALKGVPCKQVTAGLNFTGFLTIRGHVHT 239 (410)
Q Consensus 163 ~~i~~i~~G-~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~--~~~~~~i~~i~~G~~~s~~lt~~G~v~~ 239 (410)
.+|+.+.-- ..+-++|+++|.++.+- -+|.. ....+..+. ...+.++-.+..+..-.++||.++++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~-------~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF-------QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce-------eechhhhccccCcccccccccccCCCCEEEECCCCeEEE
Confidence 467777654 46788899999988763 33333 011122221 1122334444556566888999999998
Q ss_pred e
Q 015253 240 C 240 (410)
Q Consensus 240 w 240 (410)
-
T Consensus 152 v 152 (410)
T PF04841_consen 152 V 152 (410)
T ss_pred E
Confidence 7
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=87.25 E-value=23 Score=32.18 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=38.4
Q ss_pred ecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCC--eEEEEECCCcEEEEeCC
Q 015253 223 AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSG 296 (410)
Q Consensus 223 ~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~--h~~~lt~~G~vy~wG~n 296 (410)
--..+-+.-+.+|.|+.|-... ........|... ..|.+++...+ -.++.++.|++|+|-.-
T Consensus 134 pnQteLis~dqsg~irvWDl~~------~~c~~~liPe~~------~~i~sl~v~~dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 134 PNQTELISGDQSGNIRVWDLGE------NSCTHELIPEDD------TSIQSLTVMPDGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred CCcceEEeecCCCcEEEEEccC------CccccccCCCCC------cceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence 3444556667899999995322 222223333222 45777777655 45678899999999753
No 29
>PLN02153 epithiospecifier protein
Probab=85.01 E-value=37 Score=32.49 Aligned_cols=16 Identities=6% Similarity=0.287 Sum_probs=11.6
Q ss_pred eeEEEECCcEEEEeCC
Q 015253 122 HTLLISNSSVFSCGSS 137 (410)
Q Consensus 122 h~~~l~~g~vy~wG~n 137 (410)
|+++.-+++||++|-.
T Consensus 79 ~~~~~~~~~iyv~GG~ 94 (341)
T PLN02153 79 VRMVAVGTKLYIFGGR 94 (341)
T ss_pred eEEEEECCEEEEECCC
Confidence 4544478899999853
No 30
>PF13013 F-box-like_2: F-box-like domain
Probab=84.88 E-value=0.31 Score=38.28 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=29.7
Q ss_pred ccccCChhHHHHHHHhCCCChhhhhcccccccccC
Q 015253 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFG 43 (410)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~ 43 (410)
.+.|||.||++.|+ .++.+.++..++.+++.+.
T Consensus 21 tl~DLP~ELl~~I~--~~C~~~~l~~l~~~~~~~r 53 (109)
T PF13013_consen 21 TLLDLPWELLQLIF--DYCNDPILLALSRTCRAYR 53 (109)
T ss_pred chhhChHHHHHHHH--hhcCcHHHHHHHHHHHHHH
Confidence 58999999999999 8999999999999998543
No 31
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=84.23 E-value=45 Score=32.86 Aligned_cols=94 Identities=9% Similarity=0.095 Sum_probs=48.1
Q ss_pred CceEEEecCCeeEEE---ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCC--CCCEEEEEecCCeeEEE--EcCCcE
Q 015253 112 GNMQITTGRYHTLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPS--AAHVVQVSASENHAAFV--LQSGQV 184 (410)
Q Consensus 112 ~i~~ia~G~~h~~~l---~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~h~~~l--t~~G~v 184 (410)
.+..+++-..-.+++ ..|++|.|=-+.- . .+.+.. -..|+.+....+-+.++ .+||.|
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlWelssG-~--------------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V 147 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLWELSSG-I--------------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAV 147 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEEEeccc-c--------------HHHHHHhhccceeEEEEeCCCcEEEecCCCccE
Confidence 356666655444444 6899999965421 1 111111 11466666555555555 478999
Q ss_pred EEEeCCCCCcccCCCCCCceeccEEecccCC--CceEEEEecCC
Q 015253 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKG--VPCKQVTAGLN 226 (410)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~ 226 (410)
.+|-..+-- .. .....|.++..+.+ ..|+++.+|..
T Consensus 148 ~vW~l~~lv----~a--~~~~~~~p~~~f~~HtlsITDl~ig~G 185 (476)
T KOG0646|consen 148 LVWLLTDLV----SA--DNDHSVKPLHIFSDHTLSITDLQIGSG 185 (476)
T ss_pred EEEEEEeec----cc--ccCCCccceeeeccCcceeEEEEecCC
Confidence 999643311 00 11113333333332 35777777665
No 32
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.95 E-value=60 Score=33.38 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=81.7
Q ss_pred CceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCC-CCEEEEEeCC-CeEEEEECCCcEEEE
Q 015253 216 VPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEV-GSVVQIAAGP-SYMLAVTGNGVVYSF 293 (410)
Q Consensus 216 ~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~-~~i~~ia~G~-~h~~~lt~~G~vy~w 293 (410)
..|..|.+...-.+.-+.+|.|-.|=.. ..+.+..+.+. ..|..+..+. .+.+=-..|+.+-.|
T Consensus 332 ~~V~~v~~~~~~lvsgs~d~~v~VW~~~--------------~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 332 GPVNCVQLDEPLLVSGSYDGTVKVWDPR--------------TGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVW 397 (537)
T ss_pred ccEEEEEecCCEEEEEecCceEEEEEhh--------------hceeeeeecCCcceEEEEEecCcceEEeeeeccceEee
Confidence 4678888888888888999999999433 11222222211 4677777777 666666667777777
Q ss_pred eCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCC
Q 015253 294 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK 373 (410)
Q Consensus 294 G~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~ 373 (410)
=....- ..+..+.....-+..+.+-..|-+-=..||.|..|=.++.+++-. ++...
T Consensus 398 dl~~~~-------------~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~-----------~~~~~ 453 (537)
T KOG0274|consen 398 DLRTKR-------------KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT-----------LEGRH 453 (537)
T ss_pred cCCchh-------------hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee-----------eccCC
Confidence 443210 222222222223445555566666667788999995444333211 11101
Q ss_pred CCceeeeeeEEecCCcEEEEEcCCCEEEe
Q 015253 374 SHLAVQGLSVLAEVCPTIVQEDTRSCSDI 402 (410)
Q Consensus 374 ~~~i~~~~~i~~G~~~t~~l~~~g~v~~w 402 (410)
-..+.. ++.+....++-..+|.+..|
T Consensus 454 ~~~v~~---l~~~~~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 454 VGGVSA---LALGKEEILCSSDDGSVKLW 479 (537)
T ss_pred cccEEE---eecCcceEEEEecCCeeEEE
Confidence 112222 33444566666778888877
No 33
>PHA02713 hypothetical protein; Provisional
Probab=82.61 E-value=28 Score=36.07 Aligned_cols=21 Identities=5% Similarity=0.279 Sum_probs=13.9
Q ss_pred cCCeeEEEEcCCcEEEEeCCC
Q 015253 171 SENHAAFVLQSGQVFTCGDNS 191 (410)
Q Consensus 171 G~~h~~~lt~~G~vy~wG~n~ 191 (410)
.+.+..+..-+|+||++|-..
T Consensus 341 ~R~~~~~~~~~g~IYviGG~~ 361 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQN 361 (557)
T ss_pred hhhceeEEEECCEEEEECCcC
Confidence 343444556678999999643
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=82.30 E-value=0.42 Score=44.41 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=44.0
Q ss_pred cccccccCChhHHHHHHHh---CCCChhhhhcccccccccCCCCCCCCccccchhhhHHHh
Q 015253 6 RLFSIEELPSHLIFEILTS---GRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQ 63 (410)
Q Consensus 6 ~~~~~~~lp~~i~~~~~~~---~~l~~~dl~~l~~t~~~f~~~~~~~~~~~~~~~~~~~~~ 63 (410)
-.+.|..||+|||..||.. -.|+-.+|.+++.+|+.|... ..++++|...+..+-+
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~--~R~~~lwR~aC~KvW~ 161 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC--ARDPELWRLACLKVWQ 161 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH--HcChHHHHHHHHHHHH
Confidence 3455789999999999853 267788999999999999987 5666888888775544
No 35
>PLN02153 epithiospecifier protein
Probab=82.05 E-value=49 Score=31.65 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=12.9
Q ss_pred CCeEEEEECCCcEEEEeCC
Q 015253 278 PSYMLAVTGNGVVYSFGSG 296 (410)
Q Consensus 278 ~~h~~~lt~~G~vy~wG~n 296 (410)
..|++++. ++++|++|--
T Consensus 129 ~~~~~~~~-~~~iyv~GG~ 146 (341)
T PLN02153 129 TFHSMASD-ENHVYVFGGV 146 (341)
T ss_pred eeeEEEEE-CCEEEEECCc
Confidence 46776654 6789999854
No 36
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.95 E-value=69 Score=35.97 Aligned_cols=202 Identities=17% Similarity=0.140 Sum_probs=97.2
Q ss_pred ECCcEEEEeCCCCCccCCCCCCCc-eeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCC-cccCCCCCCce
Q 015253 127 SNSSVFSCGSSLCGVLGHGPETTQ-CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSF-CCGHRDTNRPI 204 (410)
Q Consensus 127 ~~g~vy~wG~n~~gqlG~~~~~~~-~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~g-qlG~~~~~~~~ 204 (410)
.|.++|.|-.+..+++-.=+.... ...-..+....+.-+-. -.|.++|...-+|+..|-...- +.+.......
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~----IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~- 171 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPE----IQHLLVVATPVEIVILGVSFDEFTGELSIFNTS- 171 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhh----hheeEEecccceEEEEEEEeccccCcccccccc-
Confidence 899999999988777653332221 11111111111111111 2688999999999988843311 1111111000
Q ss_pred eccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCC-----CccCCCCC-------------CCCCCceeecCC-
Q 015253 205 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTH-----GQLGHGDT-------------LDRPTPKSIAPL- 265 (410)
Q Consensus 205 ~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~-----gqlG~~~~-------------~~~~~p~~v~~~- 265 (410)
..| ...+..|..|++ +++|+||.-|.+.. -|...+-. -....|..+...
T Consensus 172 ---~~i-~~dg~~V~~I~~--------t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 172 ---FKI-SVDGVSVNCITY--------TENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred ---eee-ecCCceEEEEEe--------ccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 011 112333444433 55666665554321 01111110 012345533333
Q ss_pred CCCCCEEEEEeCCCeEE--EEECCCcEEEEeCCCCcccCCCC--C---------CCccccEEeeccccCCccEEEEEe--
Q 015253 266 EEVGSVVQIAAGPSYML--AVTGNGVVYSFGSGSNFCLGHGE--Q---------HDELQPRAIQTFRRKGIHVVRVSA-- 330 (410)
Q Consensus 266 ~~~~~i~~ia~G~~h~~--~lt~~G~vy~wG~n~~gqLG~g~--~---------~~~~~p~~i~~~~~~~~~i~~i~~-- 330 (410)
...++|.+|+......+ ++++.|.|=+|=...+|+-+.-. . .....|. .+..-..|++|+.
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~----~~s~f~~IvsI~~l~ 315 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPL----DDSVFFSIVSISPLS 315 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccC----CCcccceeEEecccC
Confidence 23368999999987754 56788877666554444433210 0 0000110 1111124555543
Q ss_pred ----cCCeEEEEeCCC-CEEEEec
Q 015253 331 ----GDEHVVALDSSG-YVYTWGK 349 (410)
Q Consensus 331 ----G~~hs~~lt~~G-~vy~wG~ 349 (410)
-.-|.+|+|..| ++|.-|.
T Consensus 316 ~~es~~l~LvA~ts~GvRlYfs~s 339 (1311)
T KOG1900|consen 316 ASESNDLHLVAITSTGVRLYFSTS 339 (1311)
T ss_pred cccccceeEEEEecCCeEEEEecc
Confidence 356899999999 6787664
No 37
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.40 E-value=13 Score=33.20 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=25.7
Q ss_pred CCEEEEEeCCCeEEEEECCCcEEEEeCCC
Q 015253 269 GSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (410)
Q Consensus 269 ~~i~~ia~G~~h~~~lt~~G~vy~wG~n~ 297 (410)
.+++.+.|-..+.++||++|.+|+|=-..
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~ 41 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKK 41 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence 57889999999999999999999996544
No 38
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=80.17 E-value=21 Score=34.64 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=44.7
Q ss_pred CEEEEEecCCe---eEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEe
Q 015253 164 HVVQVSASENH---AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240 (410)
Q Consensus 164 ~i~~i~~G~~h---~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~w 240 (410)
.++.+.+|.++ .+++..+|++..|-.+.. +.++ .....+.+|.-=....+|++..|+||.+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~W---------------t~l~-~~~~~~~DIi~~kGkfYAvD~~G~l~~i 224 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVL---------------KALK-QMGYHFSDIIVHKGQTYALDSIGIVYWI 224 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCee---------------eEcc-CCCceeeEEEEECCEEEEEcCCCeEEEE
Confidence 34556777775 677788999988964321 2222 2455688888888889999999999988
Q ss_pred e
Q 015253 241 G 241 (410)
Q Consensus 241 G 241 (410)
.
T Consensus 225 ~ 225 (373)
T PLN03215 225 N 225 (373)
T ss_pred e
Confidence 5
No 39
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.46 E-value=18 Score=32.36 Aligned_cols=28 Identities=14% Similarity=0.142 Sum_probs=24.4
Q ss_pred CCceEEEEecCCeEEEEEcCCcEEEeec
Q 015253 215 GVPCKQVTAGLNFTGFLTIRGHVHTCGS 242 (410)
Q Consensus 215 ~~~i~~i~~G~~~s~~lt~~G~v~~wG~ 242 (410)
+.+++.+.|-.++-++||++|.+|+|=-
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl 39 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNL 39 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEEC
Confidence 4467889999999999999999999953
No 40
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=73.66 E-value=1.2e+02 Score=31.56 Aligned_cols=57 Identities=14% Similarity=0.194 Sum_probs=32.1
Q ss_pred EEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEE---EEecCCeEEEEeCCCCEEEEec
Q 015253 283 AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR---VSAGDEHVVALDSSGYVYTWGK 349 (410)
Q Consensus 283 ~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~---i~~G~~hs~~lt~~G~vy~wG~ 349 (410)
+..-++.+|+.|-... ......++..+....+.+. ......+..+..-++++|+-|-
T Consensus 471 ~a~~~~~iYvvGG~~~----------~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDG----------TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEECCEEEEECCccC----------CCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 4445789999986442 1111113333222223333 3446667777778899999984
No 41
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=73.35 E-value=7.2 Score=23.40 Aligned_cols=24 Identities=38% Similarity=0.787 Sum_probs=21.5
Q ss_pred CCEEEEEeCC-CeEEEEECCCcEEE
Q 015253 269 GSVVQIAAGP-SYMLAVTGNGVVYS 292 (410)
Q Consensus 269 ~~i~~ia~G~-~h~~~lt~~G~vy~ 292 (410)
.++++|++|. +...+++.+|.+|.
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~ 32 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYR 32 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEE
Confidence 3699999999 88999999999986
No 42
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=72.02 E-value=42 Score=30.85 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=13.8
Q ss_pred CCeeEEEECCcEEEEeC
Q 015253 120 RYHTLLISNSSVFSCGS 136 (410)
Q Consensus 120 ~~h~~~l~~g~vy~wG~ 136 (410)
..|+++.-++++|.||-
T Consensus 80 YGHtvV~y~d~~yvWGG 96 (392)
T KOG4693|consen 80 YGHTVVEYQDKAYVWGG 96 (392)
T ss_pred cCceEEEEcceEEEEcC
Confidence 46887778889999984
No 43
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=69.68 E-value=8.8 Score=23.02 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCEEEEEecC-CeeEEEEcCCcEEEE
Q 015253 163 AHVVQVSASE-NHAAFVLQSGQVFTC 187 (410)
Q Consensus 163 ~~i~~i~~G~-~h~~~lt~~G~vy~w 187 (410)
..+++|++|. +...+++.+|.+|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 3799999999 888999999999863
No 44
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=67.05 E-value=54 Score=29.74 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=29.8
Q ss_pred CCEEEEEeCCCeEEEEECCCcEEEEeCCCCcc-cCCCCCCCccccEEee
Q 015253 269 GSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFC-LGHGEQHDELQPRAIQ 316 (410)
Q Consensus 269 ~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gq-LG~g~~~~~~~p~~i~ 316 (410)
.+|-.++.-..|.+.- -+|.||.|-+++.-. ++....-....|.++.
T Consensus 63 gpiy~~~f~d~~Lls~-gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~ 110 (325)
T KOG0649|consen 63 GPIYYLAFHDDFLLSG-GDGLVYGWEWNEEEESLATKRLWEVKIPMQVD 110 (325)
T ss_pred CCeeeeeeehhheeec-cCceEEEeeehhhhhhccchhhhhhcCccccC
Confidence 4677777776665544 469999999998755 5443333334455543
No 45
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=66.95 E-value=79 Score=29.36 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=59.8
Q ss_pred cCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC---CeEEEEECCCcEEEEeCCC-Cc
Q 015253 224 GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGS-NF 299 (410)
Q Consensus 224 G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~---~h~~~lt~~G~vy~wG~n~-~g 299 (410)
+.-|-++...||.||.-+.. .|.+|+-+... .+++.+..|. -|.+++..||..|.+-... -+
T Consensus 62 ~ap~dvapapdG~VWft~qg-~gaiGhLdP~t-------------Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~ 127 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQG-TGAIGHLDPAT-------------GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIG 127 (353)
T ss_pred CCccccccCCCCceEEecCc-cccceecCCCC-------------CceEEEecCCCCCCceEEECCCCCeeEecCcceeE
Confidence 35567788899999965432 23444322111 2444544443 4888999999999874432 22
Q ss_pred ccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecC-CCCCC
Q 015253 300 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG-YCGAL 355 (410)
Q Consensus 300 qLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n-~~gqL 355 (410)
.++.. + ...++.+. -.+-+-++-.+.+++..|.||--|.+ .+|.|
T Consensus 128 R~dpk--t--~evt~f~l-------p~~~a~~nlet~vfD~~G~lWFt~q~G~yGrL 173 (353)
T COG4257 128 RLDPK--T--LEVTRFPL-------PLEHADANLETAVFDPWGNLWFTGQIGAYGRL 173 (353)
T ss_pred EecCc--c--cceEEeec-------ccccCCCcccceeeCCCccEEEeeccccceec
Confidence 22111 1 11111111 12334456678999999999998863 34444
No 46
>PHA03098 kelch-like protein; Provisional
Probab=65.86 E-value=1.4e+02 Score=30.58 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=12.2
Q ss_pred CeeEEEECCcEEEEeCC
Q 015253 121 YHTLLISNSSVFSCGSS 137 (410)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (410)
.|+++.-+|++|++|-.
T Consensus 335 ~~~~~~~~~~lyv~GG~ 351 (534)
T PHA03098 335 NPGVTVFNNRIYVIGGI 351 (534)
T ss_pred cceEEEECCEEEEEeCC
Confidence 34444488999999964
No 47
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=65.17 E-value=1.2e+02 Score=33.50 Aligned_cols=27 Identities=19% Similarity=0.103 Sum_probs=22.4
Q ss_pred CCEEEEEecCCe--eEEEEcCCcEEEEeC
Q 015253 163 AHVVQVSASENH--AAFVLQSGQVFTCGD 189 (410)
Q Consensus 163 ~~i~~i~~G~~h--~~~lt~~G~vy~wG~ 189 (410)
..|.+|+....+ .++++.+|+++.|-.
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 479999998888 799999998877653
No 48
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=60.29 E-value=1.7e+02 Score=28.44 Aligned_cols=119 Identities=14% Similarity=0.192 Sum_probs=54.7
Q ss_pred CCCEEEEEecCC-ee-EEEEcCCc-EEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCC-eEEEEEcCCcE
Q 015253 162 AAHVVQVSASEN-HA-AFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN-FTGFLTIRGHV 237 (410)
Q Consensus 162 ~~~i~~i~~G~~-h~-~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~s~~lt~~G~v 237 (410)
...+..|..|.. |. ++.+.||+ +|..+. .|.+ ..+.......+..|..|.. +.++++.||+.
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg~v------------sviD~~~~~~v~~i~~G~~~~~i~~s~DG~~ 91 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANR--DGTV------------SVIDLATGKVVATIKVGGNPRGIAVSPDGKY 91 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEET--TSEE------------EEEETTSSSEEEEEE-SSEEEEEEE--TTTE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcC--CCeE------------EEEECCcccEEEEEecCCCcceEEEcCCCCE
Confidence 335677777654 55 45678786 777653 2322 2233334445667777655 46888999986
Q ss_pred EEeecCCCCccCCCCCCCCCCceeecCC-----CCCCCEEEEEeCCC---eEEEEECCCcEEEEe
Q 015253 238 HTCGSNTHGQLGHGDTLDRPTPKSIAPL-----EEVGSVVQIAAGPS---YMLAVTGNGVVYSFG 294 (410)
Q Consensus 238 ~~wG~n~~gqlG~~~~~~~~~p~~v~~~-----~~~~~i~~ia~G~~---h~~~lt~~G~vy~wG 294 (410)
..-++...+++-.-+......-..|+.. ....++..|.+-.. +.+.+.+.|++|.--
T Consensus 92 ~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVd 156 (369)
T PF02239_consen 92 VYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVD 156 (369)
T ss_dssp EEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEE
T ss_pred EEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEE
Confidence 5544433333332111111111111110 01135666654332 556667778888763
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=57.82 E-value=2.6e+02 Score=29.76 Aligned_cols=121 Identities=10% Similarity=-0.015 Sum_probs=63.8
Q ss_pred EEEEEecCC--eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEE--EcCCcEEEe
Q 015253 165 VVQVSASEN--HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFL--TIRGHVHTC 240 (410)
Q Consensus 165 i~~i~~G~~--h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~l--t~~G~v~~w 240 (410)
|-+++.+.. .++++...|.-.++|...-|||..=.-....+.-++-..+ ..+..++-...-.++. .+||+|-.|
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~--~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHS--DRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccc--cceeeEEECCCCcEEEeccCCCcEEEE
Confidence 444444432 2455666788888888888888753322111111111111 1234444444433333 356777777
Q ss_pred ecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCC
Q 015253 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSN 298 (410)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~ 298 (410)
-.. ...-..-+.........++...-.+..+...-||+|-+|-...|
T Consensus 378 n~~-----------SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 378 NTQ-----------SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred ecc-----------CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 321 11111112222222456677777787888888999999976654
No 50
>PHA02713 hypothetical protein; Provisional
Probab=57.25 E-value=2.4e+02 Score=29.18 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=11.1
Q ss_pred EEEEEcCCcEEEeecC
Q 015253 228 TGFLTIRGHVHTCGSN 243 (410)
Q Consensus 228 s~~lt~~G~v~~wG~n 243 (410)
..+..-+|+||..|-.
T Consensus 345 ~~~~~~~g~IYviGG~ 360 (557)
T PHA02713 345 FSLAVIDDTIYAIGGQ 360 (557)
T ss_pred eeEEEECCEEEEECCc
Confidence 3344457899999864
No 51
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=55.33 E-value=3.1e+02 Score=29.88 Aligned_cols=164 Identities=11% Similarity=0.086 Sum_probs=82.7
Q ss_pred ecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec-----CCeEEEEEcCCcEEEeecCC
Q 015253 170 ASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGSNT 244 (410)
Q Consensus 170 ~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~~s~~lt~~G~v~~wG~n~ 244 (410)
....+.+++|+.|++|..-...--..+....... ....+....+.+|+.+.+- ....+++|++|.+.-.=.+.
T Consensus 544 ~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~--i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~ 621 (800)
T TIGR01063 544 STHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKP--IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTE 621 (800)
T ss_pred cCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC--HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHH
Confidence 3456678889999999984322211111111111 1111222345667766652 23467788999777553322
Q ss_pred CCccCCCCCCCCCCceeecCCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCC
Q 015253 245 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 322 (410)
Q Consensus 245 ~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~ 322 (410)
+-.... .-.....+.+.+.++.+... ..+.+++|++|++|.+=..+--..|... ..+.+-.+. .+
T Consensus 622 ~~~~~r-------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~-----~Gv~~i~L~-~~ 688 (800)
T TIGR01063 622 FSNIRS-------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAA-----RGVRGIKLK-NE 688 (800)
T ss_pred hhhhcc-------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCC-----CCeecccCC-CC
Confidence 211000 01111111112445554333 3568999999999988665543333221 122222232 33
Q ss_pred ccEEEEEec--CCeEEEEeCCCCEEEEe
Q 015253 323 IHVVRVSAG--DEHVVALDSSGYVYTWG 348 (410)
Q Consensus 323 ~~i~~i~~G--~~hs~~lt~~G~vy~wG 348 (410)
.+|+.+.+- ..+.+++|++|.+.-.=
T Consensus 689 E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~ 716 (800)
T TIGR01063 689 DFVVSLLVVSEESYLLIVTENGYGKRTS 716 (800)
T ss_pred CEEEEEEEeccccEEEEEecCCcEEEEE
Confidence 466666543 33567788888776654
No 52
>PRK05560 DNA gyrase subunit A; Validated
Probab=54.74 E-value=3.2e+02 Score=29.83 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=84.6
Q ss_pred ecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecC-----CeEEEEEcCCcEEEeecCC
Q 015253 170 ASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSNT 244 (410)
Q Consensus 170 ~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~~s~~lt~~G~v~~wG~n~ 244 (410)
....+.+++|+.|++|..-...--..+...... .....+....+.+|+.+.+-. ...+++|++|.+.---...
T Consensus 546 ~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~--~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~ 623 (805)
T PRK05560 546 STHDTLLFFTNRGRVYRLKVYEIPEASRTARGR--PIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSE 623 (805)
T ss_pred cCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCe--EHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHH
Confidence 345667888999999998654322221111111 111122333566777776644 3467789999776543222
Q ss_pred CCccCCCCCCCCCCceeecCCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCC
Q 015253 245 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 322 (410)
Q Consensus 245 ~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~ 322 (410)
+-....+ ......+.+.+.++.+... ..+.+++|++|++|.+=..+--..|... ..+.+..+. .+
T Consensus 624 ~~~~~r~-------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~-----~Gv~~i~L~-~~ 690 (805)
T PRK05560 624 FSNIRSN-------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTA-----RGVRGIKLR-EG 690 (805)
T ss_pred hhhcccC-------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCccc-----CCcccccCC-CC
Confidence 2110000 1111112222455554443 3468999999999988654432222211 122222332 34
Q ss_pred ccEEEEEecC---CeEEEEeCCCCEEEEe
Q 015253 323 IHVVRVSAGD---EHVVALDSSGYVYTWG 348 (410)
Q Consensus 323 ~~i~~i~~G~---~hs~~lt~~G~vy~wG 348 (410)
.+|+.+.+.. .+.+++|+.|.+.-.=
T Consensus 691 E~Vv~~~~v~~~~~~il~vTk~G~iKr~~ 719 (805)
T PRK05560 691 DEVVSMDVVREDSQEILTVTENGYGKRTP 719 (805)
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCeEEEEE
Confidence 4676665543 2567788888766553
No 53
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=53.79 E-value=1.4e+02 Score=28.96 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=13.5
Q ss_pred CeeEEE-ECCcEEEEeCC
Q 015253 121 YHTLLI-SNSSVFSCGSS 137 (410)
Q Consensus 121 ~h~~~l-~~g~vy~wG~n 137 (410)
.|+.+. .+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466666 89999999964
No 54
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=53.74 E-value=3.8e+02 Score=30.41 Aligned_cols=122 Identities=21% Similarity=0.210 Sum_probs=64.7
Q ss_pred CEEEEEecCCe-eEEEE--cCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEE-ecCCeEEEE-EcCCcEE
Q 015253 164 HVVQVSASENH-AAFVL--QSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT-AGLNFTGFL-TIRGHVH 238 (410)
Q Consensus 164 ~i~~i~~G~~h-~~~lt--~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~-~G~~~s~~l-t~~G~v~ 238 (410)
.+.+++....| +++++ +||.|-.|-.-.- .|.+.. ..-+..-.+.+.++.++. |+..+.+|+ ++||.|-
T Consensus 1050 ~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~--~~~~~s----~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1050 AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKL--EGEGGS----ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred cccceeecCCCCceEEEecCCceEEEeeehhh--hcCcce----eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 46688888888 66664 7899999965432 122111 111111122444555543 455555554 7789988
Q ss_pred EeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCC-----eEEEEECCCcEEEEeCC
Q 015253 239 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS-----YMLAVTGNGVVYSFGSG 296 (410)
Q Consensus 239 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~-----h~~~lt~~G~vy~wG~n 296 (410)
..+-+.+.+ ......-.+++.+.....+++.-+-.. -.++.|..+.+..|+-.
T Consensus 1124 ~~~id~~~~-----~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1124 VLRIDHYNV-----SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred EEEcccccc-----ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 887655411 111112222333332234555443222 24567888889999753
No 55
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=49.54 E-value=2e+02 Score=28.20 Aligned_cols=25 Identities=12% Similarity=-0.080 Sum_probs=17.3
Q ss_pred eEEEEecCCeEEEE--EcCCcEEEeec
Q 015253 218 CKQVTAGLNFTGFL--TIRGHVHTCGS 242 (410)
Q Consensus 218 i~~i~~G~~~s~~l--t~~G~v~~wG~ 242 (410)
|.+...|.+-.++. ++|++||.|-.
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr 469 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHR 469 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEc
Confidence 55555666655555 57999999953
No 56
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=48.66 E-value=1.6e+02 Score=27.17 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=15.6
Q ss_pred CCeEEEEeCCCCEEEEe-cCC-CCCC
Q 015253 332 DEHVVALDSSGYVYTWG-KGY-CGAL 355 (410)
Q Consensus 332 ~~hs~~lt~~G~vy~wG-~n~-~gqL 355 (410)
+.|+++.-+ +++|.|| +|+ +|.+
T Consensus 80 YGHtvV~y~-d~~yvWGGRND~egaC 104 (392)
T KOG4693|consen 80 YGHTVVEYQ-DKAYVWGGRNDDEGAC 104 (392)
T ss_pred cCceEEEEc-ceEEEEcCccCccccc
Confidence 568887754 5899998 444 4444
No 57
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=48.42 E-value=3.8e+02 Score=28.88 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=47.3
Q ss_pred cCCCceEEEecCCeeEEEECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEe
Q 015253 109 TSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCG 188 (410)
Q Consensus 109 ~~~~i~~ia~G~~h~~~l~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG 188 (410)
.+.+|..+++-..++++-...++|+|-.+.. -.....+...+|.....=..|.++++.++.++.|-
T Consensus 75 lp~~I~alas~~~~vy~A~g~~i~~~~rgk~--------------i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~ 140 (910)
T KOG1539|consen 75 LPDKITALASDKDYVYVASGNKIYAYARGKH--------------IRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWK 140 (910)
T ss_pred CCCceEEEEecCceEEEecCcEEEEEEccce--------------EEEEeccccceEEEEeeecceEEEEEccCcEEEEE
Confidence 3457899998888877777788999875421 11111222236666666678999999999999996
Q ss_pred CCC
Q 015253 189 DNS 191 (410)
Q Consensus 189 ~n~ 191 (410)
...
T Consensus 141 ~s~ 143 (910)
T KOG1539|consen 141 TSS 143 (910)
T ss_pred ecc
Confidence 543
No 58
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=48.17 E-value=2.7e+02 Score=27.00 Aligned_cols=74 Identities=8% Similarity=0.063 Sum_probs=42.1
Q ss_pred ceEEEecCCeeEEE-ECC-cEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCC---------eeEEEEcC
Q 015253 113 NMQITTGRYHTLLI-SNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN---------HAAFVLQS 181 (410)
Q Consensus 113 i~~ia~G~~h~~~l-~~g-~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~---------h~~~lt~~ 181 (410)
+..|..|...-.++ .|| .+|+.-. .+-++-+|...+ .-.-+.......+.+|..+.. +.++|+.|
T Consensus 40 ~g~i~~G~~P~~~~spDg~~lyva~~-~~~R~~~G~~~d---~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~d 115 (352)
T TIGR02658 40 LGMTDGGFLPNPVVASDGSFFAHAST-VYSRIARGKRTD---YVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPD 115 (352)
T ss_pred EEEEEccCCCceeECCCCCEEEEEec-cccccccCCCCC---EEEEEECccCcEEeEEccCCCchhhccCccceEEECCC
Confidence 45577776555557 555 5676543 233333444443 334444555555666665544 48899999
Q ss_pred Cc-EEEEeCC
Q 015253 182 GQ-VFTCGDN 190 (410)
Q Consensus 182 G~-vy~wG~n 190 (410)
|+ +|..-.+
T Consensus 116 gk~l~V~n~~ 125 (352)
T TIGR02658 116 NKTLLFYQFS 125 (352)
T ss_pred CCEEEEecCC
Confidence 97 6766433
No 59
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=47.62 E-value=2.7e+02 Score=26.96 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=13.2
Q ss_pred CeeEEEEcCCcEEEEeCC
Q 015253 173 NHAAFVLQSGQVFTCGDN 190 (410)
Q Consensus 173 ~h~~~lt~~G~vy~wG~n 190 (410)
.|+++...+++||++|-.
T Consensus 131 ~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ceEEEEeeCCEEEEECCC
Confidence 466555468999999864
No 60
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=47.39 E-value=2.7e+02 Score=26.92 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=38.8
Q ss_pred EEEEEeCCCeEEEEECCC-cEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCC---------eEEEEeC
Q 015253 271 VVQIAAGPSYMLAVTGNG-VVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---------HVVALDS 340 (410)
Q Consensus 271 i~~ia~G~~h~~~lt~~G-~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~---------hs~~lt~ 340 (410)
+..|..|...-.+++.|| .+|..- ..+-.+-+|...+...-.-... ...+..|..+.. +.++|+.
T Consensus 40 ~g~i~~G~~P~~~~spDg~~lyva~-~~~~R~~~G~~~d~V~v~D~~t----~~~~~~i~~p~~p~~~~~~~~~~~~ls~ 114 (352)
T TIGR02658 40 LGMTDGGFLPNPVVASDGSFFAHAS-TVYSRIARGKRTDYVEVIDPQT----HLPIADIELPEGPRFLVGTYPWMTSLTP 114 (352)
T ss_pred EEEEEccCCCceeECCCCCEEEEEe-ccccccccCCCCCEEEEEECcc----CcEEeEEccCCCchhhccCccceEEECC
Confidence 444666655444577777 466543 2233333333333322111111 124555665544 4899999
Q ss_pred CCC-EEEEecC
Q 015253 341 SGY-VYTWGKG 350 (410)
Q Consensus 341 ~G~-vy~wG~n 350 (410)
||+ +|+.-..
T Consensus 115 dgk~l~V~n~~ 125 (352)
T TIGR02658 115 DNKTLLFYQFS 125 (352)
T ss_pred CCCEEEEecCC
Confidence 996 7776544
No 61
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=44.82 E-value=3.2e+02 Score=26.99 Aligned_cols=69 Identities=9% Similarity=0.056 Sum_probs=37.9
Q ss_pred CCceEEEecC-CeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCC--CCCCEEEEEecCCeeEEEEcCCcEEE
Q 015253 111 AGNMQITTGR-YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFT 186 (410)
Q Consensus 111 ~~i~~ia~G~-~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~--~~~~i~~i~~G~~h~~~lt~~G~vy~ 186 (410)
.+|+.+.=-. .+.++| +||.++..- .+|.. . ...+..+... ...++-.+..+.+-.++||.++++|.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~--~~G~~--~-----fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYD--LFGEF--Q-----FSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEe--CCCce--e-----echhhhccccCcccccccccccCCCCEEEECCCCeEEE
Confidence 3566666433 455666 999988763 33332 0 0011111111 11134445666666889999999998
Q ss_pred Ee
Q 015253 187 CG 188 (410)
Q Consensus 187 wG 188 (410)
-=
T Consensus 152 v~ 153 (410)
T PF04841_consen 152 VN 153 (410)
T ss_pred Ee
Confidence 73
No 62
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=43.47 E-value=4.5e+02 Score=28.31 Aligned_cols=161 Identities=12% Similarity=0.105 Sum_probs=83.2
Q ss_pred cCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEe--cCCeEEEEEcCCcEEEeecCCCCcc
Q 015253 171 SENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQL 248 (410)
Q Consensus 171 G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~s~~lt~~G~v~~wG~n~~gql 248 (410)
-...++++|++|-|-.--...+. +..+..-++..++.+.. ...+.+++|++|++|.+-..+-= .
T Consensus 493 ~e~v~VilTk~G~IKr~~~~~~~-------------~saikLKegD~L~~~~~~~t~d~LllfTs~Gr~yrf~v~eIP-~ 558 (735)
T TIGR01062 493 KEPVTIILSKMGWVRSAKGHDID-------------LSTLKYKAGDSEKAIIEGKSNQKVVFIDSTGRSYALDPDNLP-S 558 (735)
T ss_pred CcceEEEEecCCEEEeccccccc-------------hhccCcCCCCeEEEEEEecCCCEEEEEECCCeEEEEEhHhcC-c
Confidence 35567888888876544322221 11111112333444433 44457889999999999665431 1
Q ss_pred CCCCCCCCCCceee-cCCCCCCCEEEEEeCCC--eEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccE
Q 015253 249 GHGDTLDRPTPKSI-APLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHV 325 (410)
Q Consensus 249 G~~~~~~~~~p~~v-~~~~~~~~i~~ia~G~~--h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i 325 (410)
|. ....|... -.+.+.++|+.+.+... +.+++|+.|..+-.=.+++-....+ -..+..+.. +..+
T Consensus 559 GR----~aGgpV~~~L~L~~gE~Iv~~~~v~~~~~lLlaT~~GyGKrt~lse~~~~~Ra-------GKgvi~Lk~-~d~l 626 (735)
T TIGR01062 559 AR----GQGEPLTGKLLLPIGATITNILMYSPNQLLLMASDAGYGFLCNFNDLIARNKA-------GKALINLPE-NASV 626 (735)
T ss_pred Cc----cCCceeEeeecCCCCCEEEEEEEecCCcEEEEEEcCCcEEEEEhHhccccCcC-------CeEEEEeCC-CCEE
Confidence 21 22333333 22344467888877543 5788899987665543332111110 001111111 1122
Q ss_pred EEE--EecC-CeEEEEeCCCCEEEEecCCCCCCCC
Q 015253 326 VRV--SAGD-EHVVALDSSGYVYTWGKGYCGALGH 357 (410)
Q Consensus 326 ~~i--~~G~-~hs~~lt~~G~vy~wG~n~~gqLG~ 357 (410)
+.+ ..+. .+.+++|++|++..+-.++--.++.
T Consensus 627 v~v~~v~~~dd~V~liT~~GrlLrf~v~EIp~~gR 661 (735)
T TIGR01062 627 IAPLPVNGDSDMIAAITEAGRMLVFPIDDLPELSK 661 (735)
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEEHHHCCccCC
Confidence 221 2233 3577899999999987665444433
No 63
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=42.31 E-value=31 Score=21.29 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.3
Q ss_pred CeEEEEeCCCCEEEEecC
Q 015253 333 EHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 333 ~hs~~lt~~G~vy~wG~n 350 (410)
-+.++++.+|.+|+-|.-
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 467899999999999963
No 64
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=42.03 E-value=3.5e+02 Score=26.66 Aligned_cols=71 Identities=11% Similarity=0.133 Sum_probs=40.7
Q ss_pred CCEEEEEeCCCeEEEEE--CCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEE--eCCCCE
Q 015253 269 GSVVQIAAGPSYMLAVT--GNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVAL--DSSGYV 344 (410)
Q Consensus 269 ~~i~~ia~G~~h~~~lt--~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~l--t~~G~v 344 (410)
.+|.+++...+--++|. .+.++..|-.-+. ..+.+-..-.....-|.+...|.+..++. .+|++|
T Consensus 396 ~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-----------~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 396 QPITSFSISKDGKLALVNLQDQEIHLWDLEEN-----------KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred CceeEEEEcCCCcEEEEEcccCeeEEeecchh-----------hHHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 46777766555444443 5668888854321 11222222222223466667677766666 589999
Q ss_pred EEEecC
Q 015253 345 YTWGKG 350 (410)
Q Consensus 345 y~wG~n 350 (410)
|.|-.-
T Consensus 465 yIWhr~ 470 (519)
T KOG0293|consen 465 YIWHRI 470 (519)
T ss_pred EEEEcc
Confidence 999864
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=40.68 E-value=3.4e+02 Score=26.06 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=29.8
Q ss_pred CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEE
Q 015253 278 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTW 347 (410)
Q Consensus 278 ~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~w 347 (410)
..+.++.+.+|.||++-... |++= -.++... ......-+.. ..+-++.+.+|+||++
T Consensus 320 g~~l~~~~~~G~l~~~d~~t-G~~~----------~~~~~~~-~~~~~sp~~~-~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSRED-GSFV----------ARLKTDG-SGIASPPVVV-GDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCC-CCEE----------EEEEcCC-CccccCCEEE-CCEEEEEeCCceEEEe
Confidence 34677778899999985432 1110 0111000 0001111233 3567778899999986
No 66
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=40.62 E-value=2.3e+02 Score=26.68 Aligned_cols=18 Identities=6% Similarity=0.171 Sum_probs=13.2
Q ss_pred CeeEEEECCcEEEEeCCC
Q 015253 121 YHTLLISNSSVFSCGSSL 138 (410)
Q Consensus 121 ~h~~~l~~g~vy~wG~n~ 138 (410)
.|++++.+++||++|-..
T Consensus 116 ~~~~~~~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACYKDGTLYVGGGNR 133 (323)
T ss_pred CceEEEECCEEEEEeCcC
Confidence 455555789999999753
No 67
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=40.58 E-value=20 Score=28.05 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=38.4
Q ss_pred ccccCChhHHHHHHHhCCCChhhhhcccccccccCCCCCCCCccccchhhhHHHh
Q 015253 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQ 63 (410)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~~~~~~~~~~~~~~~~~~~ 63 (410)
.+.++|.++|.-|| ..+++..|..+|..+..+. ...++.|+.-....|.
T Consensus 3 dvG~~py~ll~piL--~~~~~~QL~~iE~~np~l~----~~tdeLW~~~i~rdFp 51 (109)
T PF06881_consen 3 DVGDVPYHLLRPIL--EKCSPEQLRRIEDNNPHLI----EDTDELWKKLIKRDFP 51 (109)
T ss_pred ccCCCCHHHHHHHH--ccCCHHHHHHHHHhCCCcc----hhhHHHHHHHHHhHCc
Confidence 57799999999999 8889999999999986543 2345777766665554
No 68
>PHA02790 Kelch-like protein; Provisional
Probab=40.55 E-value=2.1e+02 Score=28.99 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=11.1
Q ss_pred EEEEcCCcEEEEeCC
Q 015253 176 AFVLQSGQVFTCGDN 190 (410)
Q Consensus 176 ~~lt~~G~vy~wG~n 190 (410)
.+..-+|+||+.|-.
T Consensus 357 ~~~~~~g~IYviGG~ 371 (480)
T PHA02790 357 AVASINNVIYVIGGH 371 (480)
T ss_pred EEEEECCEEEEecCc
Confidence 344568999999864
No 69
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=39.60 E-value=3.4e+02 Score=25.76 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=12.1
Q ss_pred CeeEEE-ECCcEEEEeCC
Q 015253 121 YHTLLI-SNSSVFSCGSS 137 (410)
Q Consensus 121 ~h~~~l-~~g~vy~wG~n 137 (410)
.|+.+. .+|+||++|--
T Consensus 110 ~~~~~~~~~g~IYviGG~ 127 (346)
T TIGR03547 110 GASGFSLHNGQAYFTGGV 127 (346)
T ss_pred ceeEEEEeCCEEEEEcCc
Confidence 344553 78999999863
No 70
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=39.34 E-value=18 Score=27.55 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.9
Q ss_pred ccccCChhHHHHHHHhCCCChhhhhcc
Q 015253 9 SIEELPSHLIFEILTSGRLSAVDLAHL 35 (410)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~~~dl~~l 35 (410)
....||.||-..|| .+|+..||..+
T Consensus 71 ~w~~LP~EIk~~Il--~~L~~~dL~~l 95 (97)
T PF09372_consen 71 YWNILPIEIKYKIL--EYLSNKDLKKL 95 (97)
T ss_pred chhhCCHHHHHHHH--HcCCHHHHHHH
Confidence 45689999999999 99999998764
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=38.53 E-value=3.7e+02 Score=25.83 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=12.4
Q ss_pred CeEEEEECCCcEEEE
Q 015253 279 SYMLAVTGNGVVYSF 293 (410)
Q Consensus 279 ~h~~~lt~~G~vy~w 293 (410)
++.++.+.+|+||++
T Consensus 362 ~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 362 DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEeCCceEEEe
Confidence 567888899999986
No 72
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=38.49 E-value=6.5e+02 Score=28.71 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=62.3
Q ss_pred CCceEEEecCCe-eEEE---ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEE-ecCCeeEEE-EcCCcE
Q 015253 111 AGNMQITTGRYH-TLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVS-ASENHAAFV-LQSGQV 184 (410)
Q Consensus 111 ~~i~~ia~G~~h-~~~l---~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~-~G~~h~~~l-t~~G~v 184 (410)
..+.+++....| ++++ .||.|-+|-.-. ..|.+.... ...+ -.+...++.++. |+..+.+|+ ++||.|
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k--~~~~~~s~r--S~lt--ys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRK--LEGEGGSAR--SELT--YSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehh--hhcCcceee--eeEE--EeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 346688888888 6766 899999996532 223321111 1111 112344566554 555555544 789999
Q ss_pred EEEeCCCCCcccCCCCCCceeccEEe--ccc-CCCceEEEEec----CCe-EEEEEcCCcEEEeec
Q 015253 185 FTCGDNSSFCCGHRDTNRPIFRPRLV--EAL-KGVPCKQVTAG----LNF-TGFLTIRGHVHTCGS 242 (410)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v--~~~-~~~~i~~i~~G----~~~-s~~lt~~G~v~~wG~ 242 (410)
-..+-+.+- .....+..+ ..+ ....+++..+- ..| .++.|..+++..|+.
T Consensus 1123 ~~~~id~~~--------~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~ 1180 (1431)
T KOG1240|consen 1123 RVLRIDHYN--------VSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDT 1180 (1431)
T ss_pred EEEEccccc--------cccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecc
Confidence 888766531 111111111 111 11224443332 223 355788899999964
No 73
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=37.76 E-value=43 Score=24.64 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=27.4
Q ss_pred cccEEecCCCCCceeeeeeEEec-CCcEEEEEcCCCEEEeeeCCCCCC
Q 015253 364 TLPEPLSSLKSHLAVQGLSVLAE-VCPTIVQEDTRSCSDIICHDSTQA 410 (410)
Q Consensus 364 ~~P~~v~~~~~~~i~~~~~i~~G-~~~t~~l~~~g~v~~wG~~~~gQ~ 410 (410)
..|..|.. +..-+. |+|. ....++|++||.+|.-+--.+|+|
T Consensus 7 t~Pa~i~~--~~tS~~---Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 7 THPASINL--GQTSIS---VSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp E--SEEET--T-SEEE---EEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccccccc--cccEEE---EEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 34555543 223445 8899 888899999999999887766653
No 74
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=37.01 E-value=3.4e+02 Score=24.96 Aligned_cols=40 Identities=10% Similarity=-0.047 Sum_probs=23.7
Q ss_pred ceeccEEecccCCCceEEEEecCCeEEEE-EcCCcEEEeec
Q 015253 203 PIFRPRLVEALKGVPCKQVTAGLNFTGFL-TIRGHVHTCGS 242 (410)
Q Consensus 203 ~~~~p~~v~~~~~~~i~~i~~G~~~s~~l-t~~G~v~~wG~ 242 (410)
+...|..+..-.+.-=.-+-|-..++++- ++++.|-.|-.
T Consensus 132 p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~ 172 (334)
T KOG0278|consen 132 PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDH 172 (334)
T ss_pred CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEe
Confidence 34455555543333224456777777665 67888888843
No 75
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.88 E-value=5.6e+02 Score=27.47 Aligned_cols=67 Identities=15% Similarity=0.050 Sum_probs=36.0
Q ss_pred CEEEEEecCCee-EEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEe
Q 015253 164 HVVQVSASENHA-AFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240 (410)
Q Consensus 164 ~i~~i~~G~~h~-~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~w 240 (410)
+++.+.-...|. ++++++|.++.+|.-. ..-.....-.+ ....+|+.+-.-.+-.++++.+|+++.-
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g-----e~ie~~svg~e-----~~~~~I~ec~~f~~GVavlt~~g~v~~i 152 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLG-----EFIESNSVGFE-----SQMSDIVECRFFHNGVAVLTVSGQVILI 152 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecch-----hhhcccccccc-----cccCceeEEEEecCceEEEecCCcEEEE
Confidence 344444445565 5578999999987531 11000000001 1122344443333567889999999975
No 76
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=36.78 E-value=4.1e+02 Score=25.84 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=56.9
Q ss_pred ceEEEecCC-eeE-EE-ECCc-EEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC-CeeEEEEcCCcEEEE
Q 015253 113 NMQITTGRY-HTL-LI-SNSS-VFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-NHAAFVLQSGQVFTC 187 (410)
Q Consensus 113 i~~ia~G~~-h~~-~l-~~g~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~h~~~lt~~G~vy~w 187 (410)
+..|..|.. |.. +. .||+ +|+.+. .| .-..+.+...+.+..|..|. -+.++++.||+...-
T Consensus 29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~r--dg------------~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v 94 (369)
T PF02239_consen 29 VARIPTGGAPHAGLKFSPDGRYLYVANR--DG------------TVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYV 94 (369)
T ss_dssp EEEEE-STTEEEEEE-TT-SSEEEEEET--TS------------EEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEE
T ss_pred EEEEcCCCCceeEEEecCCCCEEEEEcC--CC------------eEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEE
Confidence 567777654 664 45 7675 888753 23 34566777777788898886 557889999986655
Q ss_pred eCCCCCcccCCCCCCceeccE-Eecc------cCCCceEEEEecCC---eEEEEEcCCcEEEe
Q 015253 188 GDNSSFCCGHRDTNRPIFRPR-LVEA------LKGVPCKQVTAGLN---FTGFLTIRGHVHTC 240 (410)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~-~v~~------~~~~~i~~i~~G~~---~s~~lt~~G~v~~w 240 (410)
++...+++-.-+.. ..+|. .++. ....++..|.+... +.+.+.+.+++|.-
T Consensus 95 ~n~~~~~v~v~D~~--tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 95 ANYEPGTVSVIDAE--TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp EEEETTEEEEEETT--T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred EecCCCceeEeccc--cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 55444444432221 11111 1110 12234555544322 44556677888765
No 77
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.72 E-value=7e+02 Score=28.57 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=81.5
Q ss_pred EEEEcCCcEEEEeCCCCCcccCCCCC-CceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCc-cCCCCC
Q 015253 176 AFVLQSGQVFTCGDNSSFCCGHRDTN-RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQ-LGHGDT 253 (410)
Q Consensus 176 ~~lt~~G~vy~wG~n~~gqlG~~~~~-~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gq-lG~~~~ 253 (410)
+-+|-|.++|.|-.+..+++-.-+.. ..+..-..++.-.+..+-.| .|.++|...-+|+..|-...-. .+....
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCccccc
Confidence 56789999999998886655432221 11111122222223322222 6888998888998887532211 111111
Q ss_pred CCCCCceeecCCCCCCCEEEEEe-CCCeEEEE-ECCCcEEEEeCCCC-----cccCCCCCC-------------CccccE
Q 015253 254 LDRPTPKSIAPLEEVGSVVQIAA-GPSYMLAV-TGNGVVYSFGSGSN-----FCLGHGEQH-------------DELQPR 313 (410)
Q Consensus 254 ~~~~~p~~v~~~~~~~~i~~ia~-G~~h~~~l-t~~G~vy~wG~n~~-----gqLG~g~~~-------------~~~~p~ 313 (410)
.. .-+|+. |-+-.++. +++|+||.-|.+.+ .|...|-.. ....|.
T Consensus 169 ~~---------------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs 233 (1311)
T KOG1900|consen 169 NT---------------SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS 233 (1311)
T ss_pred cc---------------ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhh
Confidence 11 112222 22222233 67777777666542 222222111 112455
Q ss_pred EeeccccCCccEEEEEecCCeEEE--EeCCCCEEEEecCCCCC
Q 015253 314 AIQTFRRKGIHVVRVSAGDEHVVA--LDSSGYVYTWGKGYCGA 354 (410)
Q Consensus 314 ~i~~~~~~~~~i~~i~~G~~hs~~--lt~~G~vy~wG~n~~gq 354 (410)
.+..+......|.+|+......+. +++.|.|=+|=-...|+
T Consensus 234 ~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~ 276 (1311)
T KOG1900|consen 234 LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGL 276 (1311)
T ss_pred hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccCCCc
Confidence 333331345589999998877655 56778776665444443
No 78
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=36.36 E-value=2.3e+02 Score=22.82 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=36.1
Q ss_pred CEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEE
Q 015253 270 SVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346 (410)
Q Consensus 270 ~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~ 346 (410)
+.+++-|-....+.+..||.|-+--.. .....-..+...... .|.=-.+-....+++++.|+||+
T Consensus 3 R~~~Ly~~~~~~L~I~~~G~V~Gt~~~----------~~~~~ile~~s~~~g--~V~ik~~~s~~YLCmn~~G~ly~ 67 (126)
T smart00442 3 RLRQLYCRNGQHLQILPDGTVDGTRDE----------SSSFTILEIIAVAVG--VVAIKGVASCRYLCMNKCGKLYG 67 (126)
T ss_pred eEEEEEeCCCeEEEEcCCceEecccCC----------CCcceEEEEEeccCC--EEEEEEcccceEEEECCCCCEEE
Confidence 567777766566788888887653211 111111222222111 22222334567789999999997
No 79
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=35.77 E-value=87 Score=17.83 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.1
Q ss_pred CCEEEEEeCCCeEEEEECCCcE
Q 015253 269 GSVVQIAAGPSYMLAVTGNGVV 290 (410)
Q Consensus 269 ~~i~~ia~G~~h~~~lt~~G~v 290 (410)
+.|..|++|.....+.|+.+-|
T Consensus 2 E~i~aia~g~~~vavaTS~~~l 23 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYL 23 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeE
Confidence 5799999999999999988744
No 80
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=35.64 E-value=85 Score=29.76 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=38.8
Q ss_pred EEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeE--EEEEcCCcEEEee
Q 015253 177 FVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFT--GFLTIRGHVHTCG 241 (410)
Q Consensus 177 ~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s--~~lt~~G~v~~wG 241 (410)
+..+.|+||.|-.... .+...++......+..|.|.+....-+ +++.+++.||.|-
T Consensus 324 ~gnq~g~v~vwdL~~~---------ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDNN---------EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hccCCCcEEEEECCCC---------CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3457899999975431 223556666666777888887776554 4568899999984
No 81
>PRK05560 DNA gyrase subunit A; Validated
Probab=35.58 E-value=6.2e+02 Score=27.64 Aligned_cols=212 Identities=13% Similarity=0.040 Sum_probs=102.6
Q ss_pred CeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC-----CeeEEEEcCCcEEEEeCCCCCc
Q 015253 121 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-----NHAAFVLQSGQVFTCGDNSSFC 194 (410)
Q Consensus 121 ~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~h~~~lt~~G~vy~wG~n~~gq 194 (410)
.+.+++ +.|++|..-...--..+....... -...+.+....+|+.+.+-. ...+++|++|.+--.-.+.+-.
T Consensus 549 d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~--i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~ 626 (805)
T PRK05560 549 DTLLFFTNRGRVYRLKVYEIPEASRTARGRP--IVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSN 626 (805)
T ss_pred CeEEEEecCCeEEEEEhhhCcCCCcCCCCeE--HHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 334555 899999986552222211111110 01123455556787777654 3468889999776554332211
Q ss_pred ccCCCCCCceeccEEecccCCCceEEEEe--cCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEE
Q 015253 195 CGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVV 272 (410)
Q Consensus 195 lG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~ 272 (410)
...+ -...+..-++..++.+.. ...+.+++|++|++|.+=..+--..|.. .....+..+.+.++|+
T Consensus 627 ~~r~-------G~~~ikLke~D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~-----~~Gv~~i~L~~~E~Vv 694 (805)
T PRK05560 627 IRSN-------GIIAINLDEGDELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRT-----ARGVRGIKLREGDEVV 694 (805)
T ss_pred cccC-------CceeeccCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcc-----cCCcccccCCCCCEEE
Confidence 0000 000111112333443333 3446788999999998855433222221 1122233344446777
Q ss_pred EEEeCC---CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEE--EecCCeEEEEeCCCCEEEE
Q 015253 273 QIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV--SAGDEHVVALDSSGYVYTW 347 (410)
Q Consensus 273 ~ia~G~---~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i--~~G~~hs~~lt~~G~vy~w 347 (410)
.+.+-. .+.+++|++|.+.-.=.+++-....+ ......-.+...+..++.+ ..+....+++|.+|++.-+
T Consensus 695 ~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~-----~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf 769 (805)
T PRK05560 695 SMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRG-----GKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRT 769 (805)
T ss_pred EEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCC-----CCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEE
Confidence 766543 26788888886665433222111100 0111111121111233333 2344567888999988877
Q ss_pred ecCC
Q 015253 348 GKGY 351 (410)
Q Consensus 348 G~n~ 351 (410)
-.+.
T Consensus 770 ~~~e 773 (805)
T PRK05560 770 RVSE 773 (805)
T ss_pred EHHH
Confidence 6543
No 82
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=34.69 E-value=6.4e+02 Score=27.52 Aligned_cols=210 Identities=12% Similarity=0.041 Sum_probs=100.2
Q ss_pred CeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec-----CCeeEEEEcCCcEEEEeCCCCCc
Q 015253 121 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS-----ENHAAFVLQSGQVFTCGDNSSFC 194 (410)
Q Consensus 121 ~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~h~~~lt~~G~vy~wG~n~~gq 194 (410)
.+.+++ +.|++|..-...--..+....... -...+.+....+|+.+.+- ....+++|++|.+--.-.+.+-.
T Consensus 547 d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~--i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~ 624 (800)
T TIGR01063 547 DYLLFFTNRGKVYWLKVYQIPEASRTAKGKP--IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSN 624 (800)
T ss_pred CeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC--HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhh
Confidence 334555 899999984322211111111110 0112345555677776652 23567889999877654333211
Q ss_pred ccCCCCCCceeccEE-ecccCCCceEEEE--ecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCE
Q 015253 195 CGHRDTNRPIFRPRL-VEALKGVPCKQVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSV 271 (410)
Q Consensus 195 lG~~~~~~~~~~p~~-v~~~~~~~i~~i~--~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i 271 (410)
... .... +..-.+..++.+. ....+.+++|++|++|.+=..+--..|... ....+-.+.+.++|
T Consensus 625 ~~r--------~G~~aiklke~D~lv~v~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~-----~Gv~~i~L~~~E~V 691 (800)
T TIGR01063 625 IRS--------NGIIAIKLDDGDELISVRLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAA-----RGVRGIKLKNEDFV 691 (800)
T ss_pred hcc--------CCcccccCCCCCEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCC-----CCeecccCCCCCEE
Confidence 000 0000 0001122334332 334568889999999988655433333221 12222234444677
Q ss_pred EEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEE--ecCCeEEEEeCCCCEEEE
Q 015253 272 VQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS--AGDEHVVALDSSGYVYTW 347 (410)
Q Consensus 272 ~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~--~G~~hs~~lt~~G~vy~w 347 (410)
+.+.+- ..+.+++|++|.+.-.=..++-....+ ..-...-.+...+..++.+. ......+++|++|++..+
T Consensus 692 v~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~~R~-----~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf 766 (800)
T TIGR01063 692 VSLLVVSEESYLLIVTENGYGKRTSIEEYRETSRG-----GKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRT 766 (800)
T ss_pred EEEEEeccccEEEEEecCCcEEEEEHHHccccCCC-----CcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEe
Confidence 776653 346788888887665533322111100 01111111211112333332 234457788888888877
Q ss_pred ecC
Q 015253 348 GKG 350 (410)
Q Consensus 348 G~n 350 (410)
-.+
T Consensus 767 ~~~ 769 (800)
T TIGR01063 767 SVQ 769 (800)
T ss_pred eHh
Confidence 644
No 83
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=33.43 E-value=4.1e+02 Score=24.92 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=12.3
Q ss_pred CeeEEEEcCCcEEEEeCCC
Q 015253 173 NHAAFVLQSGQVFTCGDNS 191 (410)
Q Consensus 173 ~h~~~lt~~G~vy~wG~n~ 191 (410)
.|++++ -+++||.+|-..
T Consensus 116 ~~~~~~-~~~~iYv~GG~~ 133 (323)
T TIGR03548 116 NGSACY-KDGTLYVGGGNR 133 (323)
T ss_pred CceEEE-ECCEEEEEeCcC
Confidence 455544 568999998753
No 84
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=33.14 E-value=45 Score=21.32 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=12.0
Q ss_pred CCeEEEEECCCcEEEEeC
Q 015253 278 PSYMLAVTGNGVVYSFGS 295 (410)
Q Consensus 278 ~~h~~~lt~~G~vy~wG~ 295 (410)
..|+++...++++|.+|-
T Consensus 3 ~~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 3 YGHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp BS-EEEEE-TTEEEEE--
T ss_pred ceEEEEEEeCCeEEEECC
Confidence 468888887889999984
No 85
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=32.57 E-value=6.5e+02 Score=26.93 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=24.4
Q ss_pred cCCCceEEEEecCC----eEEEEEcCCcEEEee
Q 015253 213 LKGVPCKQVTAGLN----FTGFLTIRGHVHTCG 241 (410)
Q Consensus 213 ~~~~~i~~i~~G~~----~s~~lt~~G~v~~wG 241 (410)
+....+..|+||.. .+++||..|.+.-|-
T Consensus 215 lr~n~f~avaCg~gicAestfait~qGhLvEFS 247 (1080)
T KOG1408|consen 215 LRFNEFLAVACGVGICAESTFAITAQGHLVEFS 247 (1080)
T ss_pred cccchhhhhhhcCcccccceEEEecccceeeec
Confidence 34556889999988 899999999998874
No 86
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=30.19 E-value=2.4e+02 Score=27.58 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=41.8
Q ss_pred eEEEecCCe---eEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEe
Q 015253 114 MQITTGRYH---TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCG 188 (410)
Q Consensus 114 ~~ia~G~~h---~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG 188 (410)
+.+.+|..+ .+++ .+|++.-|-.+ .-+.++. ....+.+|..=....+|++..|+||.+.
T Consensus 163 ~~~~~~~~~~~~vl~i~~~g~l~~w~~~---------------~Wt~l~~-~~~~~~DIi~~kGkfYAvD~~G~l~~i~ 225 (373)
T PLN03215 163 VKVKEGDNHRDGVLGIGRDGKINYWDGN---------------VLKALKQ-MGYHFSDIIVHKGQTYALDSIGIVYWIN 225 (373)
T ss_pred EEeecCCCcceEEEEEeecCcEeeecCC---------------eeeEccC-CCceeeEEEEECCEEEEEcCCCeEEEEe
Confidence 345666665 5566 88999888643 2333332 3347899998888999999999999986
No 87
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=29.87 E-value=8.3e+02 Score=27.33 Aligned_cols=128 Identities=11% Similarity=0.085 Sum_probs=64.2
Q ss_pred ceEEEecCCe--eEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeec-CC-CCCCEEEEEecC-----CeeEEEEcCC
Q 015253 113 NMQITTGRYH--TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRIN-FP-SAAHVVQVSASE-----NHAAFVLQSG 182 (410)
Q Consensus 113 i~~ia~G~~h--~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~-~~-~~~~i~~i~~G~-----~h~~~lt~~G 182 (410)
+.++.....| .+++ +.|++|..=...--............ ..++ +. ...+|+.+.+-. .+.+++|++|
T Consensus 554 i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~~I~--nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G 631 (957)
T PRK13979 554 NKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGERLD--EIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSG 631 (957)
T ss_pred eEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCeEHH--HhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCC
Confidence 5555555444 3444 99999987543221111100000000 1111 21 245777776653 2468889999
Q ss_pred cEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecC-----CeEEEEEcCCcEEEeecCCCCccCC
Q 015253 183 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSNTHGQLGH 250 (410)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~~s~~lt~~G~v~~wG~n~~gqlG~ 250 (410)
.+--.-...+- .....-..+..-++..++.+.... .+.+++|++|.+.-+-.++--.+|.
T Consensus 632 ~VKrt~L~ef~--------~~r~~~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 632 GIKKTSLDKFV--------TNYTKLMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred eEEEEehhhcc--------ccccceEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 98776544321 001111122222344555544432 3578899999988886655444443
No 88
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=29.80 E-value=1.5e+02 Score=28.26 Aligned_cols=58 Identities=14% Similarity=0.024 Sum_probs=37.3
Q ss_pred EEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEec--CCcEEEEEcCCCEEEeee
Q 015253 336 VALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAE--VCPTIVQEDTRSCSDIIC 404 (410)
Q Consensus 336 ~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G--~~~t~~l~~~g~v~~wG~ 404 (410)
++..+.|+||+|-.. +.++...++......+..|.| .+.. +..-+++.+++.||.|-.
T Consensus 323 a~gnq~g~v~vwdL~--------~~ep~~~ttl~~s~~~~tVRQ---~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLD--------NNEPPKCTTLTHSKSGSTVRQ---TSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred hhccCCCcEEEEECC--------CCCCccCceEEeccccceeee---eeecccCcEEEEEeCCCcEEEEEe
Confidence 445788999999842 122224456665666666766 4444 344555679999999954
No 89
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=29.62 E-value=2.6e+02 Score=26.16 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=59.2
Q ss_pred CceEEEecC---CeeEEE-ECCcEEEEeCCC-CCccCCCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEE
Q 015253 112 GNMQITTGR---YHTLLI-SNSSVFSCGSSL-CGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFT 186 (410)
Q Consensus 112 ~i~~ia~G~---~h~~~l-~~g~vy~wG~n~-~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~ 186 (410)
+++.+.-|. -|.+.+ .||..|..-... -++++.. ....++.+++ .+.+-+.-.+.+++..|+||.
T Consensus 94 ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpk-----t~evt~f~lp-----~~~a~~nlet~vfD~~G~lWF 163 (353)
T COG4257 94 EVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPK-----TLEVTRFPLP-----LEHADANLETAVFDPWGNLWF 163 (353)
T ss_pred ceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCc-----ccceEEeecc-----cccCCCcccceeeCCCccEEE
Confidence 355555443 577888 999999986542 2222221 1133444444 234455667888999999999
Q ss_pred EeCCC-CCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEe
Q 015253 187 CGDNS-SFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTC 240 (410)
Q Consensus 187 wG~n~-~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~w 240 (410)
.|.+- +|.|--... .....|.+ --+.-.-++.|-||+||.-
T Consensus 164 t~q~G~yGrLdPa~~-~i~vfpaP------------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 164 TGQIGAYGRLDPARN-VISVFPAP------------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred eeccccceecCcccC-ceeeeccC------------CCCCCcceEECCCCcEEEE
Confidence 98743 333321111 00111111 1234456788999999975
No 90
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=29.10 E-value=7.5e+02 Score=26.57 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=65.8
Q ss_pred ceEEEecCCe--eEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCC-CCCEEEEEecCCeeEEEE--cCCcEEE
Q 015253 113 NMQITTGRYH--TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPS-AAHVVQVSASENHAAFVL--QSGQVFT 186 (410)
Q Consensus 113 i~~ia~G~~h--~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~-~~~i~~i~~G~~h~~~lt--~~G~vy~ 186 (410)
|-+++.+..- ++++ ..|.-.++|+..-|||..=.-... .. -++... ..++..++-..+-.++.| +||+|-.
T Consensus 300 ih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE--sY-VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 300 IHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE--SY-VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred EEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc--ce-eeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 3344444322 3444 568888888888888874221110 00 111111 125666666665544443 7888888
Q ss_pred EeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCC
Q 015253 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHG 246 (410)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~g 246 (410)
|-..+..++- +. -+.-++...++.+.-.+..+..+-||.|-+|-...|-
T Consensus 377 Wn~~SgfC~v---------TF--teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYr 425 (893)
T KOG0291|consen 377 WNTQSGFCFV---------TF--TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYR 425 (893)
T ss_pred EeccCceEEE---------Ee--ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccc
Confidence 8655421111 11 1112344556777777777777889999999766553
No 91
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=29.06 E-value=1.5e+02 Score=21.94 Aligned_cols=39 Identities=3% Similarity=0.089 Sum_probs=27.2
Q ss_pred cceeecCCCceEEEec-CCeeEEE-ECCcEEEEeCCCCCcc
Q 015253 104 SDIVETSAGNMQITTG-RYHTLLI-SNSSVFSCGSSLCGVL 142 (410)
Q Consensus 104 p~~v~~~~~i~~ia~G-~~h~~~l-~~g~vy~wG~n~~gql 142 (410)
|.-+.....=..|+|. ....++| .||.+|.-+--..|.+
T Consensus 9 Pa~i~~~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 9 PASINLGQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp -SEEETT-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccccccccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 4445555556789999 8889999 9999999886556553
No 92
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=27.39 E-value=3.2e+02 Score=21.81 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=34.1
Q ss_pred EEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEE-EecCCeEEEEeCCCCEEE
Q 015253 273 QIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV-SAGDEHVVALDSSGYVYT 346 (410)
Q Consensus 273 ~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i-~~G~~hs~~lt~~G~vy~ 346 (410)
++-|-..+.+.+..||+|-+-.... +...-..+..... .++.| .+-....+++++.|+||+
T Consensus 2 qLy~~~~~~L~I~~dG~V~Gt~~~~----------~~~s~l~~~s~~~---g~v~i~~v~s~~YLCmn~~G~ly~ 63 (123)
T cd00058 2 QLYCRTGFHLQILPDGTVDGTRDDS----------SSYTILERIAVAV---GVVSIKGVASCRYLCMNKCGKLYG 63 (123)
T ss_pred eEEEcCCeEEEEcCCCcEecccCCC----------CCCceEEEEECCC---CEEEEEEcccceEEEECCCCCEEE
Confidence 3445556778888899987643211 1122222222221 23333 233566788999999997
No 93
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=26.34 E-value=3.3e+02 Score=21.51 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=40.1
Q ss_pred EEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEE
Q 015253 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTW 347 (410)
Q Consensus 271 i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~w 347 (410)
.+++-|-..+.+.+..+|.|-+-+... +...-..+...... .|.--++-....+++++.|+||+-
T Consensus 2 ~~~Ly~~~~~~L~i~~~g~V~gt~~~~----------~~~s~~~i~~~~~g--~V~i~~~~s~~YLcmn~~G~ly~~ 66 (122)
T PF00167_consen 2 HVQLYCRTGYFLQINPNGTVDGTGDDN----------SPYSVFEIHSVGFG--VVRIRGVKSCRYLCMNKCGRLYGS 66 (122)
T ss_dssp EEEEEETTSEEEEEETTSBEEEESSTT----------STTGEEEEEEEETT--EEEEEETTTTEEEEEBTTSBEEEE
T ss_pred CEEEEECCCeEEEECCCCeEeCCCCcC----------cceeEEEEEeccce--EEEEEEecceEEEEECCCCeEccc
Confidence 567888878889999999998876531 11111222222211 222223334677999999999984
No 94
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=25.86 E-value=74 Score=20.43 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=12.7
Q ss_pred CeeEEEECCcEEEEeCC
Q 015253 121 YHTLLISNSSVFSCGSS 137 (410)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (410)
.|++++-++++|++|--
T Consensus 4 ~hs~~~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGY 20 (49)
T ss_pred ceEEEEECCEEEEECCc
Confidence 35555589999999954
No 95
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=25.65 E-value=8.6e+02 Score=26.16 Aligned_cols=118 Identities=18% Similarity=0.143 Sum_probs=57.7
Q ss_pred eeEEE-ECCcEEEEeCCCCCccCCC------CC-CC-ceeceeeecCC-CCCCEEEEEecC-CeeEEEEcCCcEEE----
Q 015253 122 HTLLI-SNSSVFSCGSSLCGVLGHG------PE-TT-QCVSFTRINFP-SAAHVVQVSASE-NHAAFVLQSGQVFT---- 186 (410)
Q Consensus 122 h~~~l-~~g~vy~wG~n~~gqlG~~------~~-~~-~~~~p~~v~~~-~~~~i~~i~~G~-~h~~~lt~~G~vy~---- 186 (410)
..++. .|+++|+|-.+....+-.. .. .. .....+.++.. ....|.+|.... .+.++|.-.-.|..
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 44555 8899999988765543211 00 00 00111111111 122677887664 33355544444433
Q ss_pred --EeCCCCCcccCCCCCCceeccEEeccc---CCCceEEEE-----ecCCeEEEEEcCCcEEEe
Q 015253 187 --CGDNSSFCCGHRDTNRPIFRPRLVEAL---KGVPCKQVT-----AGLNFTGFLTIRGHVHTC 240 (410)
Q Consensus 187 --wG~n~~gqlG~~~~~~~~~~p~~v~~~---~~~~i~~i~-----~G~~~s~~lt~~G~v~~w 240 (410)
||.+.+-+-|.... .....|.--..+ ....|.++. ....|-++||+|+.+-.+
T Consensus 114 ~r~g~~~~~~~g~~~i-~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y 176 (717)
T PF10168_consen 114 RRWGKNGEFEDGKKEI-NCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLY 176 (717)
T ss_pred cccCccccccCCCcce-eEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEE
Confidence 67665443333221 222222211111 233566664 347899999999975444
No 96
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=24.97 E-value=9.4e+02 Score=26.36 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=26.0
Q ss_pred ceeeecCCCCCCEEEEEecCCeeEEEEcCCcE--EEEeCC
Q 015253 153 SFTRINFPSAAHVVQVSASENHAAFVLQSGQV--FTCGDN 190 (410)
Q Consensus 153 ~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~v--y~wG~n 190 (410)
.|.-+.. ....|..|++-.+|.+.-++++.| |-+++.
T Consensus 48 ~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 48 EPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred CCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 4444443 344799999999999999998875 555543
No 97
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=23.64 E-value=1e+03 Score=26.44 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=33.5
Q ss_pred eEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecC
Q 015253 280 YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 280 h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n 350 (410)
+.+.|+++|++|. + . +.+.. .+.++.....|-++.|.+-.+...=-+
T Consensus 593 ~~~GLs~~~~Ly~-n--~---------------~~la~------~~tSF~v~~~~Ll~TT~~h~l~fv~L~ 639 (928)
T PF04762_consen 593 VLFGLSSNGRLYA-N--S---------------RLLAS------NCTSFAVTDSFLLFTTTQHTLKFVHLN 639 (928)
T ss_pred EEEEECCCCEEEE-C--C---------------EEEec------CCceEEEEcCEEEEEecCceEEEEECc
Confidence 6888999999996 1 1 12221 688888888888888887777766544
No 98
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=23.48 E-value=1.1e+03 Score=26.49 Aligned_cols=130 Identities=6% Similarity=0.029 Sum_probs=68.1
Q ss_pred CEEEEEec--CCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccc--CCCceEEEEecCC-----eEEEEEcC
Q 015253 164 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL--KGVPCKQVTAGLN-----FTGFLTIR 234 (410)
Q Consensus 164 ~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~--~~~~i~~i~~G~~-----~s~~lt~~ 234 (410)
.+..+... ..+.+++|+.|++|.-=...--......... ..-..+..+ .+.+|+.+.+-.. +.+++|++
T Consensus 553 ~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~~G~--~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~ 630 (957)
T PRK13979 553 FNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKEKGE--RLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDS 630 (957)
T ss_pred ceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCCCCe--EHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECC
Confidence 45555444 4556888999999976433211111100101 111111101 3566777666532 35788999
Q ss_pred CcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-----CeEEEEECCCcEEEEeCCCCcccCC
Q 015253 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGH 303 (410)
Q Consensus 235 G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~-----~h~~~lt~~G~vy~wG~n~~gqLG~ 303 (410)
|.+.-.=..++- .. ... ...-.+.+.+.++.+.... .+.+++|++|.+.-+-.++--.+|.
T Consensus 631 G~VKrt~L~ef~-----~~--r~~-~~aikL~e~DeLV~v~~~~~~~~~~~Iil~Tk~G~airF~~~eVr~mGR 696 (957)
T PRK13979 631 GGIKKTSLDKFV-----TN--YTK-LMALKLKKGEKLIKVKLVDRTREEKFIKIKTKKGLSFTVEEPELEPVDR 696 (957)
T ss_pred CeEEEEehhhcc-----cc--ccc-eEEEEcCCCCEEEEEEEcCCCCCCCEEEEEeCCCcEEEEEHHHCcccCC
Confidence 988766433221 00 111 2333344445677665433 4589999999888776655444443
No 99
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=23.11 E-value=5.3e+02 Score=22.85 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=12.5
Q ss_pred CeEEEEECCCcEEEEeC
Q 015253 279 SYMLAVTGNGVVYSFGS 295 (410)
Q Consensus 279 ~h~~~lt~~G~vy~wG~ 295 (410)
--.++++.+|+||+.-.
T Consensus 186 pDG~~vD~~G~l~va~~ 202 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADW 202 (246)
T ss_dssp EEEEEEBTTS-EEEEEE
T ss_pred CCcceEcCCCCEEEEEc
Confidence 45788999999998643
No 100
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=22.83 E-value=40 Score=31.73 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=34.4
Q ss_pred cccCChhHHHHHHHhCCCChhhhhcccccccccCCCCCCCCccccchh
Q 015253 10 IEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLV 57 (410)
Q Consensus 10 ~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~~~~~~~~~~~~~ 57 (410)
-..||++|++.|| .-|--+||......|+-|... -.++..|..-
T Consensus 98 ~~slpDEill~IF--s~L~kk~LL~~~~VC~Rfyr~--~~de~lW~~l 141 (419)
T KOG2120|consen 98 WDSLPDEILLGIF--SCLCKKELLKVSGVCKRFYRL--ASDESLWQTL 141 (419)
T ss_pred cccCCHHHHHHHH--HhccHHHHHHHHHHHHHHhhc--cccccceeee
Confidence 3689999999999 789999999999999988776 2333444433
No 101
>PHA03092 semaphorin-like protein; Provisional
Probab=22.59 E-value=1.4e+02 Score=23.33 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=24.9
Q ss_pred CCCCEEEEecCCCCCCCCCCCCCccccEEecC
Q 015253 340 SSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS 371 (410)
Q Consensus 340 ~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~ 371 (410)
-+|.||++-.|.-..-|+.+.....+..+|+.
T Consensus 40 vngavytfsnn~lnktglan~nyittsikved 71 (134)
T PHA03092 40 VNGAVYTFSNNKLNKTGLANTNYITTSIKVED 71 (134)
T ss_pred cCceEEEecCCccccccccccceEEEEEEEcc
Confidence 47899999999888888877766666666654
No 102
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=22.19 E-value=1.1e+03 Score=25.98 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=25.8
Q ss_pred eccEEecccCCCceEEEEecCCeEEEEEcCCcE--EEeec
Q 015253 205 FRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHV--HTCGS 242 (410)
Q Consensus 205 ~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v--~~wG~ 242 (410)
..|..+.. .+..|..|++-..|.+.-++++.| |.++.
T Consensus 47 e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 47 EEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred cCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCC
Confidence 45555542 466788999988888888888865 55543
No 103
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=21.61 E-value=5.7e+02 Score=22.65 Aligned_cols=16 Identities=6% Similarity=-0.083 Sum_probs=11.9
Q ss_pred CeEEEEEcCCcEEEee
Q 015253 226 NFTGFLTIRGHVHTCG 241 (410)
Q Consensus 226 ~~s~~lt~~G~v~~wG 241 (410)
--.++++.+|+||..-
T Consensus 186 pDG~~vD~~G~l~va~ 201 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVAD 201 (246)
T ss_dssp EEEEEEBTTS-EEEEE
T ss_pred CCcceEcCCCCEEEEE
Confidence 4578899999999863
No 104
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=21.36 E-value=5.3e+02 Score=22.17 Aligned_cols=186 Identities=11% Similarity=0.050 Sum_probs=83.8
Q ss_pred CceEEEecCC-eeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC--CeeEEEEcCCcEEE
Q 015253 112 GNMQITTGRY-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVFT 186 (410)
Q Consensus 112 ~i~~ia~G~~-h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~h~~~lt~~G~vy~ 186 (410)
.|..++--.. ..++. .+|.++.|-..... ....... ....+..+..-. ...++...+|.|+.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~------------~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i 77 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGE------------LLRTLKG-HTGPVRDVAASADGTYLASGSSDKTIRL 77 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC------------cEEEEec-CCcceeEEEECCCCCEEEEEcCCCeEEE
Confidence 3555554433 23333 68999999644221 0111111 111343444333 34555566899999
Q ss_pred EeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCC-eEEEEEc-CCcEEEeecCCCCccCCCCCCCCCCceeecC
Q 015253 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN-FTGFLTI-RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (410)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-~s~~lt~-~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~ 264 (410)
|-..... ....+.. ....|..+..... ..++... +|.|+.|-...... ...+..
T Consensus 78 ~~~~~~~------------~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----------~~~~~~ 133 (289)
T cd00200 78 WDLETGE------------CVRTLTG-HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-----------LTTLRG 133 (289)
T ss_pred EEcCccc------------ceEEEec-cCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-----------EEEecc
Confidence 8654310 1111111 1123455544433 3344444 88888885431110 111111
Q ss_pred CCCCCCEEEEEeCC-CeEEEEEC-CCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCC--eEEEEeC
Q 015253 265 LEEVGSVVQIAAGP-SYMLAVTG-NGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HVVALDS 340 (410)
Q Consensus 265 ~~~~~~i~~ia~G~-~h~~~lt~-~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~--hs~~lt~ 340 (410)
. ...|..++... ...++... +|.|+.|=.... .+ +..+......|..+..-.. +.++...
T Consensus 134 ~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~------------~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 134 H--TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG------------KC--VATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred C--CCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc------------cc--ceeEecCccccceEEECCCcCEEEEecC
Confidence 1 13466665554 23333333 888888854321 00 1111111113444444333 4455556
Q ss_pred CCCEEEEecC
Q 015253 341 SGYVYTWGKG 350 (410)
Q Consensus 341 ~G~vy~wG~n 350 (410)
+|.++.|-..
T Consensus 198 ~~~i~i~d~~ 207 (289)
T cd00200 198 DGTIKLWDLS 207 (289)
T ss_pred CCcEEEEECC
Confidence 8888888653
No 105
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=21.13 E-value=6.4e+02 Score=23.03 Aligned_cols=48 Identities=25% Similarity=0.154 Sum_probs=31.1
Q ss_pred ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCC--CEEEEEecCCeeEEEEcCCcEEEE
Q 015253 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTC 187 (410)
Q Consensus 127 ~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~--~i~~i~~G~~h~~~lt~~G~vy~w 187 (410)
-|-.+-+|-+-. ..+.|+++.... .|.+|.....-.++=+.||++-.+
T Consensus 121 fD~s~r~wDCRS-------------~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRty 170 (307)
T KOG0316|consen 121 FDSSVRLWDCRS-------------RSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTY 170 (307)
T ss_pred ccceeEEEEccc-------------CCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEE
Confidence 355566676532 256677766544 677777776666777788887665
No 106
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=21.09 E-value=5.4e+02 Score=22.13 Aligned_cols=51 Identities=8% Similarity=-0.026 Sum_probs=27.1
Q ss_pred ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCC-eeEEEEc-CCcEEEEeCC
Q 015253 127 SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN-HAAFVLQ-SGQVFTCGDN 190 (410)
Q Consensus 127 ~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~-h~~~lt~-~G~vy~wG~n 190 (410)
.+|.++.|-..... ....+. .....|..+..-.. ..++... +|.|+.|-..
T Consensus 71 ~~~~i~i~~~~~~~------------~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 71 SDKTIRLWDLETGE------------CVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred CCCeEEEEEcCccc------------ceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 68899988654210 111111 11124666655443 3444444 8899988654
No 107
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=20.86 E-value=9.6e+02 Score=24.95 Aligned_cols=24 Identities=8% Similarity=-0.187 Sum_probs=17.5
Q ss_pred EEecCCcEEEEEcCCCEEEeeeCC
Q 015253 383 VLAEVCPTIVQEDTRSCSDIICHD 406 (410)
Q Consensus 383 i~~G~~~t~~l~~~g~v~~wG~~~ 406 (410)
+.....+..+..-++++|+.|-.+
T Consensus 509 m~~~rs~~g~~~~~~~ly~vGG~~ 532 (571)
T KOG4441|consen 509 MTSPRSAVGVVVLGGKLYAVGGFD 532 (571)
T ss_pred CccccccccEEEECCEEEEEeccc
Confidence 445666777777889999988643
No 108
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=20.80 E-value=1.3e+02 Score=22.27 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.1
Q ss_pred cCCCceEEEEecCCeEEEEEcCC
Q 015253 213 LKGVPCKQVTAGLNFTGFLTIRG 235 (410)
Q Consensus 213 ~~~~~i~~i~~G~~~s~~lt~~G 235 (410)
+++.+|+++..|...+++..++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 45778999999999999999998
No 109
>PLN02193 nitrile-specifier protein
Probab=20.65 E-value=8.7e+02 Score=24.38 Aligned_cols=192 Identities=13% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEe-------cCCeEEEEEcCCcEEEeecCC
Q 015253 172 ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA-------GLNFTGFLTIRGHVHTCGSNT 244 (410)
Q Consensus 172 ~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~-------G~~~s~~lt~~G~v~~wG~n~ 244 (410)
..|+++.. +++||.+| |..........-..+-.+.......+.. ......+..-+++||.+|
T Consensus 167 ~~h~~~~~-~~~iyv~G-------G~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfG--- 235 (470)
T PLN02193 167 CSHGIAQV-GNKIYSFG-------GEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFG--- 235 (470)
T ss_pred cccEEEEE-CCEEEEEC-------CcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEEC---
Q ss_pred CCccCCCCCCCCCCceeecCCCCCCCEEEEEeC-------CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeec
Q 015253 245 HGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-------PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 317 (410)
Q Consensus 245 ~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G-------~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~ 317 (410)
|.......-.............+++.- ..|++++ .++++|.+| ..........+..
T Consensus 236 ------G~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~G----------G~~~~~~~~~~~~ 298 (470)
T PLN02193 236 ------GRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFG----------GVSATARLKTLDS 298 (470)
T ss_pred ------CCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEEC----------CCCCCCCcceEEE
Q ss_pred cccCCccEEEEE------ecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEe------
Q 015253 318 FRRKGIHVVRVS------AGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLA------ 385 (410)
Q Consensus 318 ~~~~~~~i~~i~------~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~------ 385 (410)
++........+. .......+..-+|++|..| |.......-..+-.+...+-.+ +.+
T Consensus 299 yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviG---------G~~g~~~~dv~~yD~~t~~W~~---~~~~g~~P~ 366 (470)
T PLN02193 299 YNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVY---------GFNGCEVDDVHYYDPVQDKWTQ---VETFGVRPS 366 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEE---------CCCCCccCceEEEECCCCEEEE---eccCCCCCC
Q ss_pred cCCcEEEEEcCCCEEEee
Q 015253 386 EVCPTIVQEDTRSCSDII 403 (410)
Q Consensus 386 G~~~t~~l~~~g~v~~wG 403 (410)
-.....+..-++++|.+|
T Consensus 367 ~R~~~~~~~~~~~iyv~G 384 (470)
T PLN02193 367 ERSVFASAAVGKHIVIFG 384 (470)
T ss_pred CcceeEEEEECCEEEEEC
Done!