Query 015253
Match_columns 410
No_of_seqs 479 out of 2019
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:22:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4d9s_A UVB-resistance protein 100.0 2E-66 6.8E-71 510.8 38.9 323 79-409 34-360 (406)
2 3kci_A Probable E3 ubiquitin-p 100.0 7.4E-66 2.5E-70 504.0 31.9 324 66-409 18-348 (389)
3 1a12_A RCC1, regulator of chro 100.0 5.4E-64 1.9E-68 494.8 37.6 322 67-409 26-368 (413)
4 4d9s_A UVB-resistance protein 100.0 5E-63 1.7E-67 486.5 37.9 296 106-409 11-308 (406)
5 3kci_A Probable E3 ubiquitin-p 100.0 2.8E-62 9.4E-67 478.8 32.5 314 76-397 68-388 (389)
6 3mvd_K Regulator of chromosome 100.0 2.2E-61 7.4E-66 477.8 38.7 319 76-409 39-377 (423)
7 3of7_A Regulator of chromosome 100.0 5.7E-62 1.9E-66 488.1 34.5 324 66-409 27-408 (473)
8 1a12_A RCC1, regulator of chro 100.0 2.6E-60 9E-65 468.5 34.0 315 76-399 74-412 (413)
9 3mvd_K Regulator of chromosome 100.0 6.3E-59 2.2E-63 460.2 36.6 310 76-398 90-420 (423)
10 3of7_A Regulator of chromosome 100.0 2.5E-57 8.4E-62 454.5 33.4 284 101-395 130-449 (473)
11 3qhy_B Beta-lactamase inhibito 100.0 2.9E-52 9.8E-57 389.3 27.5 230 107-409 20-249 (282)
12 3qhy_B Beta-lactamase inhibito 100.0 1.7E-47 5.9E-52 357.0 26.6 237 79-401 41-277 (282)
13 2ovr_B FBW7, F-BOX/WD repeat p 98.5 0.00013 4.6E-09 70.9 29.3 318 9-404 18-346 (445)
14 1p22_A F-BOX/WD-repeat protein 98.5 0.0002 6.7E-09 69.6 29.8 322 9-403 10-362 (435)
15 3v7d_B Cell division control p 98.2 0.0016 5.4E-08 63.4 28.7 289 9-350 14-340 (464)
16 1fs1_A SKP2 F-BOX, cyclin A/CD 96.8 0.00028 9.6E-09 46.9 1.1 44 8-55 7-50 (53)
17 4gbf_A Phikz131; 7-bladed beta 96.7 0.0032 1.1E-07 55.2 6.5 71 164-248 310-380 (400)
18 1k3i_A Galactose oxidase precu 96.6 0.68 2.3E-05 47.3 24.9 74 332-407 457-532 (656)
19 1p22_A F-BOX/WD-repeat protein 96.6 0.57 1.9E-05 44.8 29.9 239 112-406 175-414 (435)
20 4gbf_A Phikz131; 7-bladed beta 96.4 0.0074 2.5E-07 52.9 7.2 72 216-301 309-380 (400)
21 2ovr_B FBW7, F-BOX/WD repeat p 95.7 1.6 5.4E-05 41.6 30.8 186 112-350 161-347 (445)
22 2zwa_A Leucine carboxyl methyl 94.7 0.36 1.2E-05 49.8 13.9 18 278-295 598-615 (695)
23 3k26_A Polycomb protein EED; W 93.7 3.9 0.00013 37.1 21.6 257 112-403 71-363 (366)
24 2zwa_A Leucine carboxyl methyl 93.5 3.9 0.00013 42.1 18.7 104 225-349 441-558 (695)
25 3l2o_B F-box only protein 4; s 93.2 0.013 4.6E-07 53.2 -0.4 35 9-45 4-38 (312)
26 1gxr_A ESG1, transducin-like e 91.9 6.5 0.00022 35.0 25.4 196 117-350 8-213 (337)
27 3k26_A Polycomb protein EED; W 90.8 8.9 0.0003 34.5 23.5 207 112-351 20-260 (366)
28 3v7d_B Cell division control p 89.8 14 0.00046 35.0 30.7 200 112-351 164-381 (464)
29 3ii7_A Kelch-like protein 7; p 89.1 12 0.0004 33.4 15.7 17 121-137 48-64 (306)
30 2e31_A FBS1, F-box only protei 88.4 0.093 3.2E-06 47.9 0.1 47 8-58 49-96 (297)
31 4aez_A CDC20, WD repeat-contai 86.6 20 0.00068 33.2 21.7 148 165-350 96-247 (401)
32 4aez_A CDC20, WD repeat-contai 86.3 21 0.00071 33.1 29.3 147 113-296 96-247 (401)
33 2woz_A Kelch repeat and BTB do 85.7 14 0.00048 33.2 13.5 17 225-242 150-166 (318)
34 4asc_A Kelch repeat and BTB do 84.4 22 0.00076 31.8 14.3 60 278-349 188-251 (315)
35 1gxr_A ESG1, transducin-like e 84.3 21 0.00073 31.4 27.8 192 111-350 52-254 (337)
36 3odt_A Protein DOA1; ubiquitin 84.1 21 0.00071 31.2 25.4 185 163-405 105-295 (313)
37 3p6j_A De novo designed beta-t 81.2 9.4 0.00032 30.5 8.8 109 214-346 28-138 (142)
38 2xyi_A Probable histone-bindin 79.8 40 0.0014 31.6 21.3 210 113-350 184-409 (430)
39 1zgk_A Kelch-like ECH-associat 79.5 16 0.00054 32.7 11.2 17 121-137 63-79 (308)
40 2vpj_A Kelch-like protein 12; 79.2 33 0.0011 30.2 14.2 17 121-137 55-71 (301)
41 4g56_B MGC81050 protein; prote 78.9 38 0.0013 30.8 29.7 235 110-408 94-345 (357)
42 3jro_A Fusion protein of prote 78.7 62 0.0021 33.1 25.9 156 164-351 55-238 (753)
43 3jrp_A Fusion protein of prote 78.6 37 0.0013 30.4 29.0 194 112-350 13-239 (379)
44 3mmy_A MRNA export factor; mRN 76.2 42 0.0014 29.8 27.7 190 112-350 41-246 (368)
45 3sfz_A APAF-1, apoptotic pepti 76.1 91 0.0031 33.7 22.5 194 164-403 1046-1246(1249)
46 3no0_A DNA gyrase subunit A; D 76.1 42 0.0014 29.8 22.4 206 164-401 25-239 (276)
47 1xip_A Nucleoporin NUP159; bet 75.7 46 0.0016 31.3 13.4 98 218-347 90-187 (388)
48 2vpj_A Kelch-like protein 12; 75.5 42 0.0014 29.5 14.8 17 278-295 151-167 (301)
49 2ast_B S-phase kinase-associat 75.1 1.1 3.8E-05 41.0 1.9 36 8-45 7-42 (336)
50 3no0_A DNA gyrase subunit A; D 74.9 45 0.0015 29.6 21.6 211 113-355 26-250 (276)
51 2xyi_A Probable histone-bindin 74.7 55 0.0019 30.5 25.7 211 108-351 126-353 (430)
52 4a11_B DNA excision repair pro 73.3 53 0.0018 29.7 24.0 155 163-351 44-218 (408)
53 3mkq_A Coatomer beta'-subunit; 72.9 85 0.0029 31.9 22.1 149 112-297 99-259 (814)
54 3vl1_A 26S proteasome regulato 72.8 57 0.002 29.8 28.6 141 115-296 63-211 (420)
55 3zwl_B Eukaryotic translation 72.1 53 0.0018 29.1 27.3 199 112-350 34-248 (369)
56 3mmy_A MRNA export factor; mRN 71.9 53 0.0018 29.1 22.7 148 163-350 40-198 (368)
57 3mkq_A Coatomer beta'-subunit; 69.4 1E+02 0.0035 31.3 26.6 189 112-349 15-215 (814)
58 3no2_A Uncharacterized protein 69.2 59 0.002 28.5 19.1 163 164-357 89-267 (276)
59 1k3i_A Galactose oxidase precu 68.9 21 0.00071 36.1 10.0 57 279-349 245-305 (656)
60 1yfq_A Cell cycle arrest prote 66.9 67 0.0023 28.2 25.8 201 112-351 13-225 (342)
61 3ii7_A Kelch-like protein 7; p 66.1 53 0.0018 28.9 11.2 17 121-137 94-110 (306)
62 4gqb_B Methylosome protein 50; 65.0 81 0.0028 28.5 28.8 191 110-349 82-287 (344)
63 3uc1_A DNA gyrase subunit A; D 64.4 85 0.0029 28.6 24.7 214 168-402 49-275 (327)
64 1yfq_A Cell cycle arrest prote 63.6 77 0.0026 27.8 22.1 206 112-350 58-281 (342)
65 3odt_A Protein DOA1; ubiquitin 63.3 73 0.0025 27.4 27.9 186 112-350 20-213 (313)
66 1suu_A DNA gyrase subunit A; t 62.1 91 0.0031 28.1 23.0 175 168-357 54-237 (312)
67 3i2n_A WD repeat-containing pr 61.1 87 0.003 27.6 26.9 194 111-350 66-290 (357)
68 2xn4_A Kelch-like protein 2; s 60.0 89 0.003 27.3 15.0 17 121-137 54-70 (302)
69 3gre_A Serine/threonine-protei 59.3 1.1E+02 0.0037 28.2 18.6 200 112-350 65-291 (437)
70 1sq9_A Antiviral protein SKI8; 58.5 1E+02 0.0036 27.7 23.7 164 163-350 122-321 (397)
71 3sfz_A APAF-1, apoptotic pepti 58.0 2E+02 0.007 30.9 21.9 137 173-350 1016-1157(1249)
72 3uc1_A DNA gyrase subunit A; D 57.0 1.1E+02 0.0039 27.7 25.6 216 118-353 51-281 (327)
73 1sq9_A Antiviral protein SKI8; 56.1 1.1E+02 0.0039 27.4 24.5 210 112-350 18-266 (397)
74 4g56_B MGC81050 protein; prote 53.5 1.3E+02 0.0044 27.2 25.0 148 164-351 183-343 (357)
75 3zwl_B Eukaryotic translation 50.6 1.3E+02 0.0044 26.4 27.0 157 112-295 76-247 (369)
76 2p1m_B Transport inhibitor res 49.9 4.4 0.00015 40.2 0.8 34 9-44 5-39 (594)
77 1r5m_A SIR4-interacting protei 49.6 1.5E+02 0.005 26.7 24.1 138 173-350 218-360 (425)
78 3ogk_B Coronatine-insensitive 49.0 6.1 0.00021 39.2 1.7 34 9-44 12-46 (592)
79 3vl1_A 26S proteasome regulato 47.4 1.6E+02 0.0056 26.6 28.2 101 227-351 261-365 (420)
80 1q7f_A NHL, brain tumor CG1071 47.1 1.4E+02 0.0046 25.6 22.7 16 334-349 210-225 (286)
81 1xip_A Nucleoporin NUP159; bet 46.7 48 0.0016 31.1 7.5 64 271-349 90-153 (388)
82 4ery_A WD repeat-containing pr 45.8 1.5E+02 0.0051 25.7 23.4 149 164-349 151-310 (312)
83 1pgu_A Actin interacting prote 45.0 2.2E+02 0.0074 27.3 26.1 148 164-350 208-365 (615)
84 3jro_A Fusion protein of prote 44.8 2.6E+02 0.009 28.3 23.3 199 112-351 55-285 (753)
85 2xn4_A Kelch-like protein 2; s 44.7 1.6E+02 0.0054 25.6 12.1 16 121-136 101-116 (302)
86 2woz_A Kelch repeat and BTB do 44.1 75 0.0026 28.2 8.3 17 332-349 150-166 (318)
87 4a11_B DNA excision repair pro 43.1 1.8E+02 0.0062 25.9 29.9 209 112-351 45-276 (408)
88 4gga_A P55CDC, cell division c 43.1 2E+02 0.0068 26.4 27.0 141 119-296 114-260 (420)
89 1wp5_A Topoisomerase IV; broke 42.3 2E+02 0.0067 26.1 26.3 218 168-402 46-273 (323)
90 4asc_A Kelch repeat and BTB do 42.3 89 0.003 27.6 8.5 17 121-137 141-157 (315)
91 3snv_A Symfoil-4T/permutation 41.6 1.3E+02 0.0044 23.7 8.8 65 270-346 51-116 (143)
92 1r5m_A SIR4-interacting protei 40.7 2E+02 0.0069 25.7 29.0 196 112-350 110-318 (425)
93 4ery_A WD repeat-containing pr 40.3 1.8E+02 0.0062 25.1 26.0 187 112-350 25-222 (312)
94 3i2n_A WD repeat-containing pr 39.2 1.9E+02 0.0066 25.1 26.9 189 112-350 20-242 (357)
95 2uvk_A YJHT; unknown function, 37.4 1.5E+02 0.0051 26.6 9.3 17 225-242 110-126 (357)
96 3jrp_A Fusion protein of prote 36.7 2.2E+02 0.0075 25.0 26.9 198 112-350 57-286 (379)
97 3p6j_A De novo designed beta-t 36.2 1.6E+02 0.0054 23.2 12.3 106 269-401 30-138 (142)
98 2pm9_A Protein WEB1, protein t 35.7 2.4E+02 0.0083 25.2 19.0 191 119-347 114-333 (416)
99 3q7x_A De novo designed beta-t 35.6 1.5E+02 0.0052 22.9 8.8 103 219-346 9-113 (132)
100 1zi0_A DNA gyrase subunit A; b 32.8 2.7E+02 0.0091 24.8 24.4 217 116-352 49-278 (307)
101 1zvt_A Topoisomerase IV subuni 32.0 2.5E+02 0.0086 24.3 12.4 127 166-303 38-169 (256)
102 1pgu_A Actin interacting prote 31.4 3.5E+02 0.012 25.8 26.8 153 164-350 162-327 (615)
103 4gqb_B Methylosome protein 50; 29.7 3E+02 0.01 24.5 25.5 151 164-349 84-244 (344)
104 2aq5_A Coronin-1A; WD40 repeat 28.6 3.3E+02 0.011 24.5 24.1 153 168-350 40-206 (402)
105 3no2_A Uncharacterized protein 28.4 2.9E+02 0.0098 23.8 23.6 159 215-406 87-261 (276)
106 1zi0_A DNA gyrase subunit A; b 28.0 3.2E+02 0.011 24.3 24.9 212 168-402 49-273 (307)
107 4aow_A Guanine nucleotide-bind 27.9 2.9E+02 0.0099 23.7 23.6 66 269-349 216-284 (340)
108 1suu_A DNA gyrase subunit A; t 27.9 3.3E+02 0.011 24.3 24.6 216 116-351 54-283 (312)
109 1vyh_C Platelet-activating fac 26.8 3.6E+02 0.012 24.5 26.2 143 112-295 110-263 (410)
110 3f3f_A Nucleoporin SEH1; struc 23.4 3.4E+02 0.012 23.0 30.9 119 112-243 13-142 (351)
111 2aq5_A Coronin-1A; WD40 repeat 22.8 4.1E+02 0.014 23.8 29.0 154 116-296 40-206 (402)
112 4e54_B DNA damage-binding prot 22.8 4.4E+02 0.015 24.1 21.1 70 108-189 117-194 (435)
113 3f3f_A Nucleoporin SEH1; struc 22.7 3.5E+02 0.012 22.9 26.9 77 111-191 58-143 (351)
114 4gga_A P55CDC, cell division c 22.4 4.4E+02 0.015 23.9 26.3 65 113-190 150-217 (420)
115 3q7x_A De novo designed beta-t 21.7 2.8E+02 0.0095 21.3 8.5 104 165-292 8-113 (132)
116 3gre_A Serine/threonine-protei 21.6 4.5E+02 0.015 23.7 19.2 161 110-297 111-292 (437)
117 1wp5_A Topoisomerase IV; broke 21.1 4.5E+02 0.015 23.6 24.3 223 116-356 46-282 (323)
118 3l6v_A GYRA, DNA gyrase subuni 20.5 5E+02 0.017 23.8 26.1 126 168-302 53-185 (370)
No 1
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=2e-66 Score=510.76 Aligned_cols=323 Identities=24% Similarity=0.324 Sum_probs=285.9
Q ss_pred cceeeecccCccccceeeeeccccccceeecCC--CceEEEecCCeeEEE-ECC-cEEEEeCCCCCccCCCCCCCceece
Q 015253 79 QIELLNRCNGNWKRVLRFLQSVEHSSDIVETSA--GNMQITTGRYHTLLI-SNS-SVFSCGSSLCGVLGHGPETTQCVSF 154 (410)
Q Consensus 79 ~g~l~~~~~~~~~~~~~~~~~~~~~p~~v~~~~--~i~~ia~G~~h~~~l-~~g-~vy~wG~n~~gqlG~~~~~~~~~~p 154 (410)
.|.||.||.+.+++++.........|..++.+. +|++|+||..|+++| ++| +||+||.|.+||||.+.... ...|
T Consensus 34 ~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~-~~~p 112 (406)
T 4d9s_A 34 GDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSD-LFTP 112 (406)
T ss_dssp TTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCC-EEEE
T ss_pred CCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCc-cccc
Confidence 344444444444444433333334566665544 699999999999999 775 99999999999999988754 4567
Q ss_pred eeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcC
Q 015253 155 TRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIR 234 (410)
Q Consensus 155 ~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~ 234 (410)
.++......+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|+++..+.+.+|++|+||.+|+++|+++
T Consensus 113 ~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~~~~~~i~~va~G~~hs~alt~~ 191 (406)
T 4d9s_A 113 LPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT-EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTED 191 (406)
T ss_dssp EECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETT
T ss_pred eEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCC-CCcccceEecccCCCcEEEEecCCCeEEEEeCC
Confidence 7777766679999999999999999999999999999999999887 567889999999999999999999999999999
Q ss_pred CcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEE
Q 015253 235 GHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRA 314 (410)
Q Consensus 235 G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~ 314 (410)
|+||+||.|.+||||.+.......|.++..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.++......|++
T Consensus 192 G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~-~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~ 270 (406)
T 4d9s_A 192 GDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG-EKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 270 (406)
T ss_dssp SCEEEEECCTTSTTCSSSSCCEEEEEECCCSTT-CCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred CCEEEeeCCCCCCCCCCCCCCcCccEEecccCC-ceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEE
Confidence 999999999999999999888889999987765 6899999999999999999999999999999999999888889999
Q ss_pred eeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEE
Q 015253 315 IQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQE 394 (410)
Q Consensus 315 i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~ 394 (410)
++.+. +.+|++|+||.+|++||+++|+||+||.|.+||||.++......|++|+.+.+.++++ |+||.+|+++|+
T Consensus 271 v~~~~--~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~---va~G~~hs~alt 345 (406)
T 4d9s_A 271 LEALS--NSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ---VSCGWRHTLAVT 345 (406)
T ss_dssp CGGGT--TSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEE---EEECSSEEEEEE
T ss_pred ecccC--CCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEE---EEeCCCeEEEEe
Confidence 98774 4579999999999999999999999999999999999999999999998887888999 999999999999
Q ss_pred cCCCEEEeeeCCCCC
Q 015253 395 DTRSCSDIICHDSTQ 409 (410)
Q Consensus 395 ~~g~v~~wG~~~~gQ 409 (410)
++|+||+||.|+.||
T Consensus 346 ~~G~v~~wG~n~~Gq 360 (406)
T 4d9s_A 346 ERNNVFAWGRGTNGQ 360 (406)
T ss_dssp TTSCEEEEECCTTST
T ss_pred CCCCEEEecCCCCCc
Confidence 999999999999998
No 2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=7.4e-66 Score=504.02 Aligned_cols=324 Identities=26% Similarity=0.410 Sum_probs=283.2
Q ss_pred hccceeeccCccccceeeecccCccccceeeeeccccccceeec--CCCceEEEecCCeeEEE-ECCcEEEEeCCCCCcc
Q 015253 66 ALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVET--SAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVL 142 (410)
Q Consensus 66 ~~~~~y~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~p~~v~~--~~~i~~ia~G~~h~~~l-~~g~vy~wG~n~~gql 142 (410)
.++++|+ ||.|++|||+. ........|..++. ..+|++|+||..|+++| ++|+||+||.|.+|||
T Consensus 18 ~~G~v~~-wG~n~~GqLG~-----------~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqL 85 (389)
T 3kci_A 18 GSGTIYG-WGHNHRGQLGG-----------IEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRL 85 (389)
T ss_dssp ---CEEE-EEECTTSTTSS-----------CSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTT
T ss_pred CCCeEEE-eeCCCCccCCC-----------CcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCC
Confidence 4566666 66666666652 11111222333332 33689999999999999 9999999999999999
Q ss_pred CCCCCCCceeceeeecCCCCC--CEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEE
Q 015253 143 GHGPETTQCVSFTRINFPSAA--HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQ 220 (410)
Q Consensus 143 G~~~~~~~~~~p~~v~~~~~~--~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~ 220 (410)
|.+.... ...|++++..... ++++|+||.+|+++|+++|+||+||.|.+||||.+.. .....|++++.+.+.+|++
T Consensus 86 G~g~~~~-~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~ 163 (389)
T 3kci_A 86 GIGGTES-VSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR-SPCDRPRVIESLRGIEVVD 163 (389)
T ss_dssp SSSSSCC-EEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTSCEEE
T ss_pred CCCCcCC-ccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCC-ccCcCCeEecccCCCeEEE
Confidence 9987754 4567777655544 5688999999999999999999999999999999887 5678899999999999999
Q ss_pred EEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCC
Q 015253 221 VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSN 298 (410)
Q Consensus 221 i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~--~h~~~lt~~G~vy~wG~n~~ 298 (410)
|+||..|+++|+++|+||+||.|.+||||.+.......|+++..+.. .+|++|+||. .|+++|+++|+||+||.|.+
T Consensus 164 va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~-~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~ 242 (389)
T 3kci_A 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG-HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDY 242 (389)
T ss_dssp EEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT-SCEEEEEECCSSCEEEEEETTTEEEEEECCGG
T ss_pred EEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC-CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCC
Confidence 99999999999999999999999999999999988899999988766 5899999995 89999999999999999999
Q ss_pred cccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCcee
Q 015253 299 FCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAV 378 (410)
Q Consensus 299 gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~ 378 (410)
||||.+.......|++++.+ .+.+|++|+||.+|++||+++|+||+||.|.+||||+++......|++|+.+.+.+++
T Consensus 243 GqLG~g~~~~~~~p~~v~~~--~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~ 320 (389)
T 3kci_A 243 GKLGRGGSDGCKVPMKIDSL--TGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVI 320 (389)
T ss_dssp GTTSSSSCCCEEEEEECGGG--TTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEE
T ss_pred CCCCCCCCCCccccEEeccc--CCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEE
Confidence 99999998888899999876 4457999999999999999999999999999999999999999999999999988999
Q ss_pred eeeeEEecCCcEEEEEcCCCEEEeeeCCCCC
Q 015253 379 QGLSVLAEVCPTIVQEDTRSCSDIICHDSTQ 409 (410)
Q Consensus 379 ~~~~i~~G~~~t~~l~~~g~v~~wG~~~~gQ 409 (410)
+ |+||.+|+++++++|+||+||.|+.||
T Consensus 321 ~---ia~G~~h~~al~~~G~v~~wG~n~~Gq 348 (389)
T 3kci_A 321 A---IATGSLHCVCCTEDGEVYTWGDNDEGQ 348 (389)
T ss_dssp E---EEECSSEEEEEETTCCEEEEECCTTST
T ss_pred E---EEeccCeEEEECCCCCEEEeeCCCCCc
Confidence 9 999999999999999999999999998
No 3
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=5.4e-64 Score=494.83 Aligned_cols=322 Identities=23% Similarity=0.306 Sum_probs=273.2
Q ss_pred ccceeeccCccccceeeecccCccccceeeeec-cccccceeecCCCceEEEecCCeeEEE-ECCcEEEEeCCCCCccCC
Q 015253 67 LHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQS-VEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGH 144 (410)
Q Consensus 67 ~~~~y~~~~~~~~g~l~~~~~~~~~~~~~~~~~-~~~~p~~v~~~~~i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~ 144 (410)
++.+|+ ||.|+.|||+. .... ....|..++...+|++|+||..|+++| ++|+||+||.|.+||||.
T Consensus 26 ~g~v~~-wG~n~~GqLG~-----------g~~~~~~~~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~ 93 (413)
T 1a12_A 26 PGLVLT-LGQGDVGQLGL-----------GENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGR 93 (413)
T ss_dssp CBEEEE-EEECTTSTTCS-----------CTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCS
T ss_pred CCcEEE-EECCCCCcCCC-----------CCCccccccceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCC
Confidence 455666 66666666643 1111 134577777788999999999999999 999999999999999999
Q ss_pred CCCC-CceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeC--CCCCcccCCCCCCceeccEEecccCCCceEEE
Q 015253 145 GPET-TQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQV 221 (410)
Q Consensus 145 ~~~~-~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i 221 (410)
+... .....|+++.++ .+|++|+||.+|+++|+++|+||+||. |.+||||.+........|.++ +...+|++|
T Consensus 94 ~~~~~~~~~~P~~v~l~--~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~i 169 (413)
T 1a12_A 94 DTSVEGSEMVPGKVELQ--EKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKV 169 (413)
T ss_dssp CCCSTTGGGSCEECCCC--SCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEE
T ss_pred CCCCCccccCCeEecCC--CcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEE
Confidence 8763 234467777553 389999999999999999999999999 999999998776556678877 456789999
Q ss_pred EecCCeEEEEEcCCcEEEeecCCCCccCCCCCCC-----------CCCceeecCCC----CCCCEEEEEeCCCeEEEEEC
Q 015253 222 TAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD-----------RPTPKSIAPLE----EVGSVVQIAAGPSYMLAVTG 286 (410)
Q Consensus 222 ~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~-----------~~~p~~v~~~~----~~~~i~~ia~G~~h~~~lt~ 286 (410)
+||.+|+++|+++|+||+||.|.+||||.+.... ...|+.+.... ...+|++|+||.+|+++|++
T Consensus 170 a~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~ 249 (413)
T 1a12_A 170 ASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISH 249 (413)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEET
T ss_pred EecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeC
Confidence 9999999999999999999999999999875432 24565555421 22689999999999999999
Q ss_pred CCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCC-CCCCccc
Q 015253 287 NGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHG-DEIDKTL 365 (410)
Q Consensus 287 ~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g-~~~~~~~ 365 (410)
+|+||+||.|.+||||.+.......|++|..+.....+|++|+||.+|+++|+++|+||+||.|.+||||++ +......
T Consensus 250 ~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~ 329 (413)
T 1a12_A 250 EGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSI 329 (413)
T ss_dssp TCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEE
T ss_pred CCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccC
Confidence 999999999999999999988888999998875433579999999999999999999999999999999999 5667788
Q ss_pred cEEecCCCCCceeeeeeEEecCCcEEEEEcCCCEEEeeeCCCCC
Q 015253 366 PEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQ 409 (410)
Q Consensus 366 P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~~gQ 409 (410)
|++|+.+. ++++ |+||.+|+++|+++|+||+||.|+.||
T Consensus 330 P~~v~~l~--~v~~---v~~G~~hs~alt~~G~v~~wG~n~~gq 368 (413)
T 1a12_A 330 PTLISRLP--AVSS---VACGASVGYAVTKDGRVFAWGMGTNYQ 368 (413)
T ss_dssp EEECCSSS--SEEE---EEECSSEEEEEETTSCEEEEECCTTST
T ss_pred CEEecccC--ceeE---EEECcceEEEEeCCCCEEEecCCCCCC
Confidence 99998876 6888 999999999999999999999999998
No 4
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=100.00 E-value=5e-63 Score=486.54 Aligned_cols=296 Identities=29% Similarity=0.422 Sum_probs=272.7
Q ss_pred eeecCCCceEEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCC-c
Q 015253 106 IVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSG-Q 183 (410)
Q Consensus 106 ~v~~~~~i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G-~ 183 (410)
+.....+|++|+||..|+++| ++|+||+||.|.+||||.+.... ...|+++......+|++|+||..|+++|+++| +
T Consensus 11 v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~ 89 (406)
T 4d9s_A 11 VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGME 89 (406)
T ss_dssp ----CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTE
T ss_pred CCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEecccCCCCEEEEEeCcceEEEEECCCCE
Confidence 344556899999999999999 99999999999999999998776 35666666666669999999999999999986 9
Q ss_pred EEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeec
Q 015253 184 VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIA 263 (410)
Q Consensus 184 vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~ 263 (410)
||+||.|.+||||.+.. .....|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.......|+++.
T Consensus 90 v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~ 168 (406)
T 4d9s_A 90 VYSWGWGDFGRLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ 168 (406)
T ss_dssp EEEEECCGGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred EEEEcCCCCcCCCCCCC-CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence 99999999999999887 56788999999999999999999999999999999999999999999999988888999998
Q ss_pred CCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCC
Q 015253 264 PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY 343 (410)
Q Consensus 264 ~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~ 343 (410)
.+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.++......|.++..+ .+.+|++|+||.+|+++|+++|+
T Consensus 169 ~~~~-~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~--~~~~i~~va~G~~ht~~l~~~G~ 245 (406)
T 4d9s_A 169 AFEG-IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTST--GGEKMSMVACGWRHTISVSYSGA 245 (406)
T ss_dssp GGTT-CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCS--TTCCEEEEEECSSEEEEEETTCC
T ss_pred ccCC-CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEeccc--CCceEEEEEECCCcEEEEcCCCC
Confidence 8765 58999999999999999999999999999999999999888899999766 34589999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCCCEEEeeeCCCCC
Q 015253 344 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQ 409 (410)
Q Consensus 344 vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~~gQ 409 (410)
||+||.|.+||||+++......|++|+.+.+.+|++ |+||.+|+++|+++|+||+||.|..||
T Consensus 246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~---i~~G~~hs~alt~~G~v~~wG~n~~Gq 308 (406)
T 4d9s_A 246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQ---ISGGWRHTMALTSDGKLYGWGWNKFGQ 308 (406)
T ss_dssp EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEE---EEECSSEEEEEETTSCEEEEECCTTST
T ss_pred EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEE---EEecCCEEEEEcCCCeEEEeeCCCCCC
Confidence 999999999999999999999999999999989999 999999999999999999999999998
No 5
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.8e-62 Score=478.76 Aligned_cols=314 Identities=28% Similarity=0.430 Sum_probs=276.4
Q ss_pred ccccceeeecccCccccceeeeeccccccceeecCCC----ceEEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCc
Q 015253 76 RNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG----NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQ 150 (410)
Q Consensus 76 ~~~~g~l~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~----i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~ 150 (410)
..+.|+||.||.+..++++.........|..++.+.. +++|+||..|+++| ++|+||+||.|.+||||.+....
T Consensus 68 l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~- 146 (389)
T 3kci_A 68 VTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP- 146 (389)
T ss_dssp EETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC-
T ss_pred EcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc-
Confidence 3445666666666666665433333445666655544 47899999999999 99999999999999999988765
Q ss_pred eeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecC--CeE
Q 015253 151 CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFT 228 (410)
Q Consensus 151 ~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~s 228 (410)
...|+++..+...+|++|+||..|+++|+++|+||+||.|.+||||.+.. .....|++++.+.+.+|++|+||. .|+
T Consensus 147 ~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~-~~~~~p~~v~~~~~~~v~~ia~G~g~~~t 225 (389)
T 3kci_A 147 CDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDS-EDQLKPKLVEALQGHRVVDIACGSGDAQT 225 (389)
T ss_dssp EEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTSCEEEEEECCSSCEE
T ss_pred CcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCC-cccccceEecccCCCeEEEEEEcCCCcEE
Confidence 45677777666669999999999999999999999999999999999887 567889999999999999999995 899
Q ss_pred EEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCC
Q 015253 229 GFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD 308 (410)
Q Consensus 229 ~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~ 308 (410)
++|+++|+||+||.|.+||||.+.......|++++.+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus 226 ~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~-~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~ 304 (389)
T 3kci_A 226 LCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTG-LGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDH 304 (389)
T ss_dssp EEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTT-SCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCC
T ss_pred EEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCC-CcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCcc
Confidence 999999999999999999999999888889999988765 4799999999999999999999999999999999999888
Q ss_pred ccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCC
Q 015253 309 ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVC 388 (410)
Q Consensus 309 ~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~ 388 (410)
...|++|+.+ .+.+|++|+||.+|++||+++|+||+||.|.+||||.++......|++|+.+.+.++++ |+||.+
T Consensus 305 ~~~P~~v~~l--~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~---va~G~~ 379 (389)
T 3kci_A 305 VRRPRQVQGL--QGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNR---VACGSA 379 (389)
T ss_dssp EEEEEECGGG--TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCCE---EEEETT
T ss_pred ccCCeEeccC--CCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEEE---EEecCC
Confidence 8899999876 44589999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cEEEEEcCC
Q 015253 389 PTIVQEDTR 397 (410)
Q Consensus 389 ~t~~l~~~g 397 (410)
||++|++++
T Consensus 380 ht~al~~~~ 388 (389)
T 3kci_A 380 HTLAWSTSK 388 (389)
T ss_dssp EEEEECC--
T ss_pred cEEEEecCC
Confidence 999998764
No 6
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-61 Score=477.84 Aligned_cols=319 Identities=21% Similarity=0.257 Sum_probs=267.2
Q ss_pred ccccceeeecccCccccceeeee-ccccccceeecCCCceEEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCC-cee
Q 015253 76 RNVQIELLNRCNGNWKRVLRFLQ-SVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETT-QCV 152 (410)
Q Consensus 76 ~~~~g~l~~~~~~~~~~~~~~~~-~~~~~p~~v~~~~~i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~-~~~ 152 (410)
..+.|+||.||.+.+++++.... .....|..++.+.+|++|+||..|+++| ++|+||+||.|.+||||.+.... ...
T Consensus 39 l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~ 118 (423)
T 3mvd_K 39 RTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSES 118 (423)
T ss_dssp CCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSS
T ss_pred ecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCcccc
Confidence 34455666666665555543321 2334577888888999999999999999 99999999999999999987653 234
Q ss_pred ceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeC--CCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEE
Q 015253 153 SFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD--NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGF 230 (410)
Q Consensus 153 ~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~--n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~ 230 (410)
.|.++.+ ..+|++|+||..|+++|+++|+||+||. |.+||||.+... ....| +..+.+.+|++|+||.+|+++
T Consensus 119 ~P~~v~~--~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~-~~~~p--~~~~~~~~i~~va~G~~hs~a 193 (423)
T 3mvd_K 119 KPDLIDL--PGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDG-NKRTP--IDLMEGTVCCSIASGADHLVI 193 (423)
T ss_dssp SCEECCC--SSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTB-CEEEE--EESSTTCCEEEEEECSSEEEE
T ss_pred CCeEEcC--CCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCC-CCcee--eEecCCCcEEEEecCCCeEEE
Confidence 5555554 3489999999999999999999999999 999999998763 34444 444677889999999999999
Q ss_pred EEcCCcEEEeecCCCCccCCCCCC-----------CCCCceeecCCCCCCCEEEEEeCCCeEEEE-ECCCcEEEEeCCCC
Q 015253 231 LTIRGHVHTCGSNTHGQLGHGDTL-----------DRPTPKSIAPLEEVGSVVQIAAGPSYMLAV-TGNGVVYSFGSGSN 298 (410)
Q Consensus 231 lt~~G~v~~wG~n~~gqlG~~~~~-----------~~~~p~~v~~~~~~~~i~~ia~G~~h~~~l-t~~G~vy~wG~n~~ 298 (410)
|+++|+||+||.|.+||||.+... ....|.++..... .+|++|+||.+|++++ +++|+||+||.|.+
T Consensus 194 lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~-~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~ 272 (423)
T 3mvd_K 194 LTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRA-KPFEAIWATNYCTFMRESQTQVIWATGLNNF 272 (423)
T ss_dssp EETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTC-CCEEEEEEETTEEEEEETTTCCEEEEEECTT
T ss_pred EecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCC-ccEEEEEECCcEEEEEECCCCeEEEEeCCCC
Confidence 999999999999999999997653 3467888876554 6899999999999999 69999999999999
Q ss_pred cccCCCCCCCc--cccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCC-ccccEEecCCCCC
Q 015253 299 FCLGHGEQHDE--LQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEID-KTLPEPLSSLKSH 375 (410)
Q Consensus 299 gqLG~g~~~~~--~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~-~~~P~~v~~~~~~ 375 (410)
||||.+..... ..|+++. + .+|++|+||.+|+++|+++|+||+||.|.+||||+++... ...|++|+.+.+
T Consensus 273 gqlg~~~~~~~~~~~p~~~~-~----~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~- 346 (423)
T 3mvd_K 273 KQLAHETKGKEFALTPIKTE-L----KDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE- 346 (423)
T ss_dssp CTTSSCCTTCSEEEEEEEEC-C----CSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS-
T ss_pred CcCCCCCCCCceeeeeEEcC-C----CCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC-
Confidence 99999655443 3555554 2 2799999999999999999999999999999999998765 568999988877
Q ss_pred ceeeeeeEEecCCcEEEEEcCCCEEEeeeCCCCC
Q 015253 376 LAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQ 409 (410)
Q Consensus 376 ~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~~gQ 409 (410)
++++ |+||.+|+++|+++|+||+||.|+.||
T Consensus 347 ~v~~---ia~G~~hs~alt~~G~v~~wG~n~~Gq 377 (423)
T 3mvd_K 347 KIVS---VGCGEVCSYAVTIDGKLYSWGSGVNNQ 377 (423)
T ss_dssp CEEE---EEEETTEEEEEETTSCEEEEECCTTSC
T ss_pred CEEE---EEcCCCeEEEEcCCCCEEEECCCCCCC
Confidence 8889 999999999999999999999999998
No 7
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-62 Score=488.06 Aligned_cols=324 Identities=20% Similarity=0.255 Sum_probs=264.0
Q ss_pred hccceeeccCccccceeeecccCccccceeeeeccccccceee----cCCCceEEEecCCeeEEE-ECCcEEEEeCCCCC
Q 015253 66 ALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVE----TSAGNMQITTGRYHTLLI-SNSSVFSCGSSLCG 140 (410)
Q Consensus 66 ~~~~~y~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~p~~v~----~~~~i~~ia~G~~h~~~l-~~g~vy~wG~n~~g 140 (410)
.++.+|+ ||.|..|||+.-... . ......|.+++ ...+|++|+||..|+++| ++|+||+||.|.+|
T Consensus 27 ~~g~v~~-wG~n~~GqLG~G~~~---~-----~~~~~~P~~~~~~~~~~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~G 97 (473)
T 3of7_A 27 QPLDIFC-WGTGSMCELGLGPLA---K-----NKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNVWSWGCNDVG 97 (473)
T ss_dssp SCCEEEE-EEECTTSTTCSCSCG---G-----GGEEEEEEECTTSCTTTTCEEEEEECSSEEEEEETTCCEEEEECCTTS
T ss_pred CCccEEE-EcCCCCCccCCCCCc---c-----cccccCcccccccccCCCCEEEEEeCCCeEEEEecCCeEEEeECCCCC
Confidence 4567777 777777777541100 0 01112233333 335799999999999999 99999999999999
Q ss_pred ccCCCCCCCc----------------------eeceeeec---CC---CCCCEEEEEecCCeeEEEEcCCcEEEEeC--C
Q 015253 141 VLGHGPETTQ----------------------CVSFTRIN---FP---SAAHVVQVSASENHAAFVLQSGQVFTCGD--N 190 (410)
Q Consensus 141 qlG~~~~~~~----------------------~~~p~~v~---~~---~~~~i~~i~~G~~h~~~lt~~G~vy~wG~--n 190 (410)
|||.+..... ...|++++ ++ ...+|++|+||..|+++|+++|+||+||. +
T Consensus 98 qLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~ 177 (473)
T 3of7_A 98 ALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRC 177 (473)
T ss_dssp TTCSCCC---------------------CCHHHHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEE
T ss_pred CCCCCCcccccccccccccccCccccccccccccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcC
Confidence 9998876531 23566665 22 34699999999999999999999999998 6
Q ss_pred CCCcccCCCCC-CceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCC----CCCceeecCC
Q 015253 191 SSFCCGHRDTN-RPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD----RPTPKSIAPL 265 (410)
Q Consensus 191 ~~gqlG~~~~~-~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~----~~~p~~v~~~ 265 (410)
.+||||..... .....|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+.... ...|.++..
T Consensus 178 ~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~- 256 (473)
T 3of7_A 178 NEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL- 256 (473)
T ss_dssp TTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC-
T ss_pred CCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC-
Confidence 89999985442 467889999999988999999999999999999999999999999999986543 456666643
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCC----ccccEEeeccccCCccEEEEEecCCeEEEEeCC
Q 015253 266 EEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHD----ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSS 341 (410)
Q Consensus 266 ~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~----~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~ 341 (410)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ...|++|..+ .+.+|++|+||.+|+++|+++
T Consensus 257 ---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~--~~~~i~~ia~G~~hs~~lt~~ 331 (473)
T 3of7_A 257 ---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP--DNVVIRSIAAGEHHSLILSQD 331 (473)
T ss_dssp ---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCC--TTCCEEEEEECSSEEEEEETT
T ss_pred ---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccccccc--CCccEEEEEeCCCeEEEEeCC
Confidence 5899999999999999999999999999999999987642 3578888765 445899999999999999999
Q ss_pred CCEEEEecCCCCCCCCCCCC--------------CccccEEecCCCCCceeeeeeEEecCCcEEEEEcCCCEEEeeeCCC
Q 015253 342 GYVYTWGKGYCGALGHGDEI--------------DKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDS 407 (410)
Q Consensus 342 G~vy~wG~n~~gqLG~g~~~--------------~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~~ 407 (410)
|+||+||.|.+||||.+... ....|++|+.+. +|++ |+||.+|++||+++|+||+||.|+.
T Consensus 332 G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~--~v~~---Ia~G~~hs~al~~~G~vy~wG~n~~ 406 (473)
T 3of7_A 332 GDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVP--KFKS---VAAGSHHSVAVAQNGIAYSWGFGET 406 (473)
T ss_dssp SCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECCSSC--CEEE---EEECSSEEEEEETTSCEEEEECCTT
T ss_pred CeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccCCCC--ceEE---EEeCCCeEEEEeCCCcEEEeeCCCC
Confidence 99999999999999986531 234577776543 6888 9999999999999999999999999
Q ss_pred CC
Q 015253 408 TQ 409 (410)
Q Consensus 408 gQ 409 (410)
||
T Consensus 407 Gq 408 (473)
T 3of7_A 407 YA 408 (473)
T ss_dssp CT
T ss_pred CC
Confidence 98
No 8
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=100.00 E-value=2.6e-60 Score=468.54 Aligned_cols=315 Identities=21% Similarity=0.267 Sum_probs=267.3
Q ss_pred ccccceeeecccCccccceeeee--ccccccceeecCCCceEEEecCCeeEEE-ECCcEEEEeC--CCCCccCCCCCCCc
Q 015253 76 RNVQIELLNRCNGNWKRVLRFLQ--SVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGS--SLCGVLGHGPETTQ 150 (410)
Q Consensus 76 ~~~~g~l~~~~~~~~~~~~~~~~--~~~~~p~~v~~~~~i~~ia~G~~h~~~l-~~g~vy~wG~--n~~gqlG~~~~~~~ 150 (410)
..+.|+||.||.+.+++++.... .....|..++...+|++|+||..|+++| ++|+||+||. |.+||||.+.....
T Consensus 74 l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~l~~~i~~va~G~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~ 153 (413)
T 1a12_A 74 LSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKK 153 (413)
T ss_dssp EETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBC
T ss_pred EcCCCCEEEEECCCCCCCCCCCCCCccccCCeEecCCCcEEEEecCCCeEEEEcCCCcEEEeeCCcCCCCccCcCCcccc
Confidence 34456666666666666553332 2344577776667899999999999999 9999999999 99999999876654
Q ss_pred eeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCC----------ceeccEEeccc-----CC
Q 015253 151 CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR----------PIFRPRLVEAL-----KG 215 (410)
Q Consensus 151 ~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~----------~~~~p~~v~~~-----~~ 215 (410)
...|.++ +...+|++|+||.+|+++|+++|+||+||.|.+||||.+.... ....|+.+... ..
T Consensus 154 ~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~ 231 (413)
T 1a12_A 154 SMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGH 231 (413)
T ss_dssp EEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSB
T ss_pred ccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCC
Confidence 4445555 4556899999999999999999999999999999999865321 23567666643 45
Q ss_pred CceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCC-CCEEEEEeCCCeEEEEECCCcEEEEe
Q 015253 216 VPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEV-GSVVQIAAGPSYMLAVTGNGVVYSFG 294 (410)
Q Consensus 216 ~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~-~~i~~ia~G~~h~~~lt~~G~vy~wG 294 (410)
.+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|+++..+... .+|++|+||.+|+++|+++|+||+||
T Consensus 232 ~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG 311 (413)
T 1a12_A 232 VRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLG 311 (413)
T ss_dssp CCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred ccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEee
Confidence 68999999999999999999999999999999999988888899999877541 36999999999999999999999999
Q ss_pred CCCCcccCCC-CCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecC--
Q 015253 295 SGSNFCLGHG-EQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS-- 371 (410)
Q Consensus 295 ~n~~gqLG~g-~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~-- 371 (410)
.|.+||||.+ .......|++|+.+. +|++|+||.+|++||+++|+||+||.|.+||||+++..+...|++|..
T Consensus 312 ~n~~GqLG~g~~~~~~~~P~~v~~l~----~v~~v~~G~~hs~alt~~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~ 387 (413)
T 1a12_A 312 RAEYGRLGLGEGAEEKSIPTLISRLP----AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ 387 (413)
T ss_dssp CCGGGTTCSCTTCCCEEEEEECCSSS----SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTT
T ss_pred CCCCCccCCCCCCccccCCEEecccC----ceeEEEECcceEEEEeCCCCEEEecCCCCCCCCCCCCCCcccCeEccccc
Confidence 9999999998 556677899998764 799999999999999999999999999999999999989999999975
Q ss_pred CCCCceeeeeeEEecCCcEEEEEcCCCE
Q 015253 372 LKSHLAVQGLSVLAEVCPTIVQEDTRSC 399 (410)
Q Consensus 372 ~~~~~i~~~~~i~~G~~~t~~l~~~g~v 399 (410)
+.+.++++ |+||.+|+++|+++|++
T Consensus 388 ~~~~~v~~---v~~G~~ht~~l~~~g~~ 412 (413)
T 1a12_A 388 LENRVVLS---VSSGGQHTVLLVKDKEQ 412 (413)
T ss_dssp TTTEEEEE---EEECSSEEEEEEEECSC
T ss_pred cCCCeEEE---EeeCCCcEEEEEecCCC
Confidence 56778999 99999999999999874
No 9
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=6.3e-59 Score=460.20 Aligned_cols=310 Identities=20% Similarity=0.261 Sum_probs=268.2
Q ss_pred ccccceeeecccCccccceeeeec--cccccceeecCCCceEEEecCCeeEEE-ECCcEEEEeC--CCCCccCCCCCCCc
Q 015253 76 RNVQIELLNRCNGNWKRVLRFLQS--VEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGS--SLCGVLGHGPETTQ 150 (410)
Q Consensus 76 ~~~~g~l~~~~~~~~~~~~~~~~~--~~~~p~~v~~~~~i~~ia~G~~h~~~l-~~g~vy~wG~--n~~gqlG~~~~~~~ 150 (410)
..+.|+||.||.+.+++++..... ....|..++...+|++|+||..|+++| ++|+||+||. |.+||||.+....
T Consensus 90 l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~- 168 (423)
T 3mvd_K 90 LTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGN- 168 (423)
T ss_dssp EETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBC-
T ss_pred EeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCC-
Confidence 445567777777766666543332 245678888788999999999999999 9999999999 9999999987665
Q ss_pred eeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCC----------CceeccEEecccCCCceEE
Q 015253 151 CVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTN----------RPIFRPRLVEALKGVPCKQ 220 (410)
Q Consensus 151 ~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~----------~~~~~p~~v~~~~~~~i~~ 220 (410)
.++|+.++...+|++|+||.+|+++|+++|+||+||.|.+||||.+... .....|..+..+...+|++
T Consensus 169 --~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~ 246 (423)
T 3mvd_K 169 --KRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEA 246 (423)
T ss_dssp --EEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEE
T ss_pred --CceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEE
Confidence 5777888777899999999999999999999999999999999997652 3456888998888889999
Q ss_pred EEecCCeEEEE-EcCCcEEEeecCCCCccCCCCCCCC--CCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCC
Q 015253 221 VTAGLNFTGFL-TIRGHVHTCGSNTHGQLGHGDTLDR--PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (410)
Q Consensus 221 i~~G~~~s~~l-t~~G~v~~wG~n~~gqlG~~~~~~~--~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~ 297 (410)
|+||.+|++++ +++|+||+||.|.+||||.+..... ..|+++. + .+|++|+||.+|+++|+++|+||+||.|.
T Consensus 247 i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~-~---~~v~~ia~G~~ht~alt~~G~v~~wG~n~ 322 (423)
T 3mvd_K 247 IWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE-L---KDIRHIAGGQHHTVILTTDLKCSVVGRPE 322 (423)
T ss_dssp EEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC-C---CSEEEEEECSSEEEEEETTCCEEEEECCG
T ss_pred EEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC-C---CCeEEEEcccCeEEEEeCCCcEEEEECCC
Confidence 99999999999 6999999999999999999655443 4566554 2 58999999999999999999999999999
Q ss_pred CcccCCCCCCC-ccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecC--CCC
Q 015253 298 NFCLGHGEQHD-ELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS--LKS 374 (410)
Q Consensus 298 ~gqLG~g~~~~-~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~--~~~ 374 (410)
+||||.+.... ...|++++.+.. +|++|+||.+|++||+++|+||+||.|.+||||+++..+...|++|.. +.+
T Consensus 323 ~GqLG~g~~~~~~~~p~~v~~l~~---~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~ 399 (423)
T 3mvd_K 323 YGRLGLGDVKDVVEKPTIVKKLTE---KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDDELEPIVVVSKNTQG 399 (423)
T ss_dssp GGTTCSSSCCSCEEEEEECTTCCS---CEEEEEEETTEEEEEETTSCEEEEECCTTSCSSSSSSCCEEEEEECCSTTTTT
T ss_pred CCCCCCCCccccccCceEeccCCC---CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCCCCCCCCcccCeEEeCcccCC
Confidence 99999998765 457888877642 799999999999999999999999999999999999999999999985 677
Q ss_pred CceeeeeeEEecCCcEEEEEcCCC
Q 015253 375 HLAVQGLSVLAEVCPTIVQEDTRS 398 (410)
Q Consensus 375 ~~i~~~~~i~~G~~~t~~l~~~g~ 398 (410)
.++++ |+||.+||++|+++++
T Consensus 400 ~~v~~---va~G~~ht~~l~~~~k 420 (423)
T 3mvd_K 400 KHMLL---ASGGGQHAIFLVKADK 420 (423)
T ss_dssp CCEEE---EEECSSEEEEEEECC-
T ss_pred CEEEE---EEECCCcEEEEEcccc
Confidence 88999 9999999999999875
No 10
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-57 Score=454.46 Aligned_cols=284 Identities=23% Similarity=0.326 Sum_probs=240.1
Q ss_pred ccccceeec--------CCCceEEEecCCeeEEE-ECCcEEEEeC--CCCCccCCCCCC-CceeceeeecCCCCCCEEEE
Q 015253 101 EHSSDIVET--------SAGNMQITTGRYHTLLI-SNSSVFSCGS--SLCGVLGHGPET-TQCVSFTRINFPSAAHVVQV 168 (410)
Q Consensus 101 ~~~p~~v~~--------~~~i~~ia~G~~h~~~l-~~g~vy~wG~--n~~gqlG~~~~~-~~~~~p~~v~~~~~~~i~~i 168 (410)
...|..++. ..+|++|+||..|+++| ++|+||+||. |.+||||.+... .....|.+++.....+|++|
T Consensus 130 ~~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~v 209 (473)
T 3of7_A 130 ESTPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQL 209 (473)
T ss_dssp HHSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEE
T ss_pred ccCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEE
Confidence 445666664 36799999999999999 9999999998 688999985443 23345555555555579999
Q ss_pred EecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCC---ceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCC
Q 015253 169 SASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNR---PIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTH 245 (410)
Q Consensus 169 ~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~---~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~ 245 (410)
+||..|+++|+++|+||+||.|.+||||.+.... ....|.++.. .+|++|+||.+|+++|+++|+||+||.|.+
T Consensus 210 a~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~ 286 (473)
T 3of7_A 210 APGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQF 286 (473)
T ss_dssp EECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTT
T ss_pred EecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCC
Confidence 9999999999999999999999999999986532 3456776643 579999999999999999999999999999
Q ss_pred CccCCCCCCC----CCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCC--------------
Q 015253 246 GQLGHGDTLD----RPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQH-------------- 307 (410)
Q Consensus 246 gqlG~~~~~~----~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~-------------- 307 (410)
||||.+.... ...|+++..+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+...
T Consensus 287 GqlG~~~~~~~~~~~~~P~~v~~~~~-~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~ 365 (473)
T 3of7_A 287 GQCGVSEDVEDGALVTKPKRLALPDN-VVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKAR 365 (473)
T ss_dssp STTCCCSCCCTTCEEEEEEECCCCTT-CCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEE
T ss_pred CCcCCCCcccCCceeeccccccccCC-ccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCcee
Confidence 9999987653 357888887655 589999999999999999999999999999999986531
Q ss_pred CccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCC-CCCccccEEecC--CCCCceeeeeeEE
Q 015253 308 DELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGD-EIDKTLPEPLSS--LKSHLAVQGLSVL 384 (410)
Q Consensus 308 ~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~-~~~~~~P~~v~~--~~~~~i~~~~~i~ 384 (410)
....|++++.+. +|++|+||.+|++||+++|+||+||.|.+||||+++ ..+...|++|+. +.+.++++ |+
T Consensus 366 ~~~~P~~v~~~~----~v~~Ia~G~~hs~al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~---v~ 438 (473)
T 3of7_A 366 AVPLPTKLNNVP----KFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIIL---VG 438 (473)
T ss_dssp EEEEEEECCSSC----CEEEEEECSSEEEEEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEE---EE
T ss_pred eeccCcccCCCC----ceEEEEeCCCeEEEEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEE---Ee
Confidence 123566665432 799999999999999999999999999999999999 788889999984 56778999 99
Q ss_pred ecCCcEEEEEc
Q 015253 385 AEVCPTIVQED 395 (410)
Q Consensus 385 ~G~~~t~~l~~ 395 (410)
||.+||+++..
T Consensus 439 cG~~~s~~~~~ 449 (473)
T 3of7_A 439 CGGQFSVSGGV 449 (473)
T ss_dssp ECSSEEEEEEE
T ss_pred eCCCeEEEEEe
Confidence 99999999976
No 11
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=2.9e-52 Score=389.31 Aligned_cols=230 Identities=21% Similarity=0.229 Sum_probs=197.3
Q ss_pred eecCCCceEEEecCCeeEEEECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEE
Q 015253 107 VETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFT 186 (410)
Q Consensus 107 v~~~~~i~~ia~G~~h~~~l~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~ 186 (410)
++.+.+|++|+||..|+++|+||+||+||.|.+||||... +...+|++|+||.+|+++|+ +|+||+
T Consensus 20 ~~~~~~i~~ia~G~~h~~~l~~G~v~~wG~n~~Gqlg~p~-------------~~~~~i~~ia~G~~hs~~l~-~G~v~~ 85 (282)
T 3qhy_B 20 AEAQSGVDAIAGGYFHGLALKGGKVLGWGANLNGQLTMPA-------------ATQSGVDAIAAGNYHSLALK-DGEVIA 85 (282)
T ss_dssp GGGSSSCCEEEECSSEEEEEETTEEEEEECCSSSTTSCCG-------------GGGSCCCEEEECSSEEEEEE-TTEEEE
T ss_pred ccccCCCcEEEeCCCeEEEEECCEEEEEeCCCCCCCCCCc-------------cCCCCEEEEEeCCCEEEEEE-CCEEEE
Confidence 3455689999999999999999999999999999999521 11237999999999999996 999999
Q ss_pred EeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCC
Q 015253 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 266 (410)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 266 (410)
||.|.+||||. |..+ ..+|++|+||.+|+++|+ +|+||+||.|.+||||.. . ...
T Consensus 86 wG~n~~Gqlg~---------P~~~----~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~--------~--~~~- 140 (282)
T 3qhy_B 86 WGGNEDGQTTV---------PAEA----RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVP--------A--EAQ- 140 (282)
T ss_dssp EECCTTSTTCC---------CGGG----SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCC--------G--GGG-
T ss_pred eeCCCCCCCCC---------Cccc----CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCC--------c--cCC-
Confidence 99999999995 2222 237999999999999999 999999999999999731 1 111
Q ss_pred CCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEE
Q 015253 267 EVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346 (410)
Q Consensus 267 ~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~ 346 (410)
.+|++|+||.+|+++|+ +|+||+||.|.+||||. |.++ ..+|++|+||.+|+++| ++|+||+
T Consensus 141 --~~i~~i~~G~~~~~~l~-~G~v~~wG~n~~gqlg~--------p~~~------~~~v~~i~~G~~hs~al-~~G~v~~ 202 (282)
T 3qhy_B 141 --SGVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTV--------PAEA------QSGVDDVAGGIFHSLAL-KDGKVIA 202 (282)
T ss_dssp --SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSC--------CGGG------GSSEEEEEECSSEEEEE-ETTEEEE
T ss_pred --CCeEEEEcccCEEEEEE-CCEEEEecCCCCCCCCC--------ceec------CCCeEEEEecCCEEEEE-ECCeEEE
Confidence 57999999999999999 89999999999999983 3222 13799999999999999 8999999
Q ss_pred EecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCCCEEEeeeCCCCC
Q 015253 347 WGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHDSTQ 409 (410)
Q Consensus 347 wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~~gQ 409 (410)
||.|.+||||.+. + .+ .++++ |+||..|+++|+ +|+||+||.|+.+|
T Consensus 203 wG~n~~gqlg~p~--------~--~~--~~v~~---i~~G~~h~~al~-~g~v~~wG~n~~gq 249 (282)
T 3qhy_B 203 WGDNRYKQTTVPT--------E--AL--SGVSA---IASGEWYSLALK-NGKVIAWGSSRTAP 249 (282)
T ss_dssp EECCTTSTTCCCG--------G--GG--SSCCE---EEECSSCEEEEE-TTEEEEESTTCCCC
T ss_pred EECCCCCCCCCCc--------c--cC--CCceE---EEcCCCEEEEEE-CCEEEEecCCCCcc
Confidence 9999999999632 1 11 25778 999999999999 99999999999998
No 12
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=100.00 E-value=1.7e-47 Score=356.97 Aligned_cols=237 Identities=18% Similarity=0.191 Sum_probs=194.6
Q ss_pred cceeeecccCccccceeeeeccccccceeecCCCceEEEecCCeeEEEECCcEEEEeCCCCCccCCCCCCCceeceeeec
Q 015253 79 QIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRIN 158 (410)
Q Consensus 79 ~g~l~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~i~~ia~G~~h~~~l~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~ 158 (410)
.|+||.||.+..++++. |. ....+|++|+||..|+++|+||+||+||.|.+||||.. .++
T Consensus 41 ~G~v~~wG~n~~Gqlg~--------p~--~~~~~i~~ia~G~~hs~~l~~G~v~~wG~n~~Gqlg~P---------~~~- 100 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTM--------PA--ATQSGVDAIAAGNYHSLALKDGEVIAWGGNEDGQTTVP---------AEA- 100 (282)
T ss_dssp TTEEEEEECCSSSTTSC--------CG--GGGSCCCEEEECSSEEEEEETTEEEEEECCTTSTTCCC---------GGG-
T ss_pred CCEEEEEeCCCCCCCCC--------Cc--cCCCCEEEEEeCCCEEEEEECCEEEEeeCCCCCCCCCC---------ccc-
Confidence 67888888777777752 11 23457999999999999999999999999999999952 222
Q ss_pred CCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEE
Q 015253 159 FPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVH 238 (410)
Q Consensus 159 ~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~ 238 (410)
..+|++|+||.+|+++|+ +|+||+||.|.+||||.... ...+|++|+||..|+++|+ +|+||
T Consensus 101 ---~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~-------------~~~~i~~i~~G~~~~~~l~-~G~v~ 162 (282)
T 3qhy_B 101 ---RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAE-------------AQSGVTALDGGVYTALAVK-NGGVI 162 (282)
T ss_dssp ---SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGG-------------GGSSEEEEEECSSEEEEEE-TTEEE
T ss_pred ---CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCcc-------------CCCCeEEEEcccCEEEEEE-CCEEE
Confidence 238999999999999999 99999999999999984321 2346899999999999999 89999
Q ss_pred EeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeecc
Q 015253 239 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTF 318 (410)
Q Consensus 239 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~ 318 (410)
+||.|.+||||. |.++. .+|++|+||.+|+++| ++|+||+||.|.+||||.+. +.+
T Consensus 163 ~wG~n~~gqlg~--------p~~~~-----~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~----------~~~ 218 (282)
T 3qhy_B 163 AWGDNYFGQTTV--------PAEAQ-----SGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPT----------EAL 218 (282)
T ss_dssp EEECCTTSTTSC--------CGGGG-----SSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCG----------GGG
T ss_pred EecCCCCCCCCC--------ceecC-----CCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCc----------ccC
Confidence 999999999983 33221 5799999999999999 89999999999999998532 112
Q ss_pred ccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCCC
Q 015253 319 RRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRS 398 (410)
Q Consensus 319 ~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~ 398 (410)
.+|++|+||.+|+++|+ +|+||+||.|.++|++.. ..+++ |+||..|+++|+++++
T Consensus 219 ----~~v~~i~~G~~h~~al~-~g~v~~wG~n~~gq~~v~----------------~~v~~---iaaG~~h~~al~~~~~ 274 (282)
T 3qhy_B 219 ----SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQ----------------SGVSS---IEAGPNAAYALKGGSG 274 (282)
T ss_dssp ----SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGS----------------SCEEE---EEECSSCEEEEEC---
T ss_pred ----CCceEEEcCCCEEEEEE-CCEEEEecCCCCccccCC----------------CCcEE---EEECcCeEEEEecCCC
Confidence 26999999999999999 999999999999998751 14677 9999999999999987
Q ss_pred EEE
Q 015253 399 CSD 401 (410)
Q Consensus 399 v~~ 401 (410)
.+-
T Consensus 275 ~~~ 277 (282)
T 3qhy_B 275 SGH 277 (282)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 13
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=98.52 E-value=0.00013 Score=70.91 Aligned_cols=318 Identities=9% Similarity=-0.022 Sum_probs=166.9
Q ss_pred ccccCChhHHHHHHHhCCCChhhhhcccccccccCCCCCCCCccccchhhhHHHhhhhccceeeccCccccceeeecccC
Q 015253 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNG 88 (410)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~g~l~~~~~~ 88 (410)
.+..||+||+.+|| .||++.||.++..+||.++.. ...+.+|+......... ...+. ......... ....
T Consensus 18 ~~~~lp~e~~~~i~--~~l~~~~l~~~~~v~~~~~~~--~~~~~~w~~~~~~~~~~---~~~~~--~~~~~~~~~-~~~~ 87 (445)
T 2ovr_B 18 FISLLPKELALYVL--SFLEPKDLLQAAQTCRYWRIL--AEDNLLWREKCKEEGID---EPLHI--KRRKVIKPG-FIHS 87 (445)
T ss_dssp TTTSSCHHHHHHHH--TTSCHHHHHHHTTSCHHHHHH--HTCSHHHHHHHTTTTCC---SCCCC--CC--CCSSC-CCCC
T ss_pred hhHHCCHHHHHHHH--HhCCHHHHHHHHHHhHHHHhh--cCchhHhhhheeecccc---ccccc--ccceecCCC-ccCC
Confidence 46789999999999 999999999999999998765 23344554332111000 00000 000000000 0001
Q ss_pred ccccceeee--------eccccccceeecCC-C-ceEEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeee
Q 015253 89 NWKRVLRFL--------QSVEHSSDIVETSA-G-NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRI 157 (410)
Q Consensus 89 ~~~~~~~~~--------~~~~~~p~~v~~~~-~-i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v 157 (410)
.|+...... ......+.....-. . +..++.-....+.- .||.|..|-....- ....
T Consensus 88 ~wk~~~~~~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~-------------~~~~ 154 (445)
T 2ovr_B 88 PWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGK-------------CLRT 154 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCC-------------EEEE
T ss_pred cHHHHHhhhhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCc-------------EEEE
Confidence 111110000 00000111112111 1 34444444444444 88999999753211 1111
Q ss_pred cCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcE
Q 015253 158 NFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHV 237 (410)
Q Consensus 158 ~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v 237 (410)
.......|..++......+.-..||.|..|-.... + ....+.. ....|..++......+.-+.+|.|
T Consensus 155 ~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-~-----------~~~~~~~-h~~~v~~~~~~~~~l~s~s~dg~i 221 (445)
T 2ovr_B 155 LVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETG-E-----------CIHTLYG-HTSTVRCMHLHEKRVVSGSRDATL 221 (445)
T ss_dssp CCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTT-E-----------EEEEECC-CSSCEEEEEEETTEEEEEETTSEE
T ss_pred EcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcC-c-----------EEEEECC-CCCcEEEEEecCCEEEEEeCCCEE
Confidence 11112267777776677777788999999965431 0 0111111 223567777767777777889999
Q ss_pred EEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeec
Q 015253 238 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 317 (410)
Q Consensus 238 ~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~ 317 (410)
..|-..... ....+... ...|..++......++-..+|.|+.|-... ...+..
T Consensus 222 ~~wd~~~~~-----------~~~~~~~~--~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~ 274 (445)
T 2ovr_B 222 RVWDIETGQ-----------CLHVLMGH--VAAVRCVQYDGRRVVSGAYDFMVKVWDPET--------------ETCLHT 274 (445)
T ss_dssp EEEESSSCC-----------EEEEEECC--SSCEEEEEECSSCEEEEETTSCEEEEEGGG--------------TEEEEE
T ss_pred EEEECCCCc-----------EEEEEcCC--cccEEEEEECCCEEEEEcCCCEEEEEECCC--------------CcEeEE
Confidence 999543210 01111111 146778887777778888899999995422 112222
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCC
Q 015253 318 FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTR 397 (410)
Q Consensus 318 ~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g 397 (410)
+......|..++....+.+.-..+|.|..|-......+ ..+.. ....+.. ++..+...+.-..||
T Consensus 275 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----------~~~~~-~~~~v~~---~~~~~~~l~~~~~dg 339 (445)
T 2ovr_B 275 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCI-----------HTLTG-HQSLTSG---MELKDNILVSGNADS 339 (445)
T ss_dssp ECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEE-----------EEECC-CCSCEEE---EEEETTEEEEEETTS
T ss_pred ecCCCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEE-----------EEEcC-CcccEEE---EEEeCCEEEEEeCCC
Confidence 22233367788877777777788999999975431110 11111 1122333 444445555556677
Q ss_pred CEEEeee
Q 015253 398 SCSDIIC 404 (410)
Q Consensus 398 ~v~~wG~ 404 (410)
.|..|-.
T Consensus 340 ~i~vwd~ 346 (445)
T 2ovr_B 340 TVKIWDI 346 (445)
T ss_dssp CEEEEET
T ss_pred eEEEEEC
Confidence 7777754
No 14
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=98.50 E-value=0.0002 Score=69.61 Aligned_cols=322 Identities=12% Similarity=0.048 Sum_probs=173.2
Q ss_pred ccccCChh----HHHHHHHhCCCChhhhhcccccccccCCCCCCCCccccchhhhHHHhh-------hhcc----ceeec
Q 015253 9 SIEELPSH----LIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQL-------CALH----SIYAG 73 (410)
Q Consensus 9 ~~~~lp~~----i~~~~~~~~~l~~~dl~~l~~t~~~f~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~y~~ 73 (410)
.+..||+| |+++|| .||++.||.+++.+||.++.. ...+.+|+......+.. .... ..+..
T Consensus 10 ~~~~lp~e~~~~~~~~i~--~~l~~~~l~~~~~v~~~w~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (435)
T 1p22_A 10 FITALPARGLDHIAENIL--SYLDAKSLCAAELVCKEWYRV--TSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKN 85 (435)
T ss_dssp HHHHTGGGTCHHHHHHHH--TTCCHHHHHHHHHHCHHHHHH--HHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC--
T ss_pred hHHHCCcchHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHH--hcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhcc
Confidence 35789999 999999 999999999999999999875 23445665544332210 0000 00000
Q ss_pred c------Cccc-cceeee-------cccCccccceeeeeccccccceeecCCCceEEEecCCeeEEE-ECCcEEEEeCCC
Q 015253 74 M------SRNV-QIELLN-------RCNGNWKRVLRFLQSVEHSSDIVETSAGNMQITTGRYHTLLI-SNSSVFSCGSSL 138 (410)
Q Consensus 74 ~------~~~~-~g~l~~-------~~~~~~~~~~~~~~~~~~~p~~v~~~~~i~~ia~G~~h~~~l-~~g~vy~wG~n~ 138 (410)
. ..+. ...++. .-..+|....... ............|..++......+.- .||.|..|-...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~---~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~ 162 (435)
T 1p22_A 86 KPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSL---QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNT 162 (435)
T ss_dssp -------CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCC---CCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSS
T ss_pred CCCCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccc---eEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCC
Confidence 0 0000 000000 0001111100000 00000011223466777765555555 899999995432
Q ss_pred CCccCCCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCce
Q 015253 139 CGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPC 218 (410)
Q Consensus 139 ~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i 218 (410)
. ............|..++......+.-..||.|..|-....-. ...+. .....|
T Consensus 163 ~-------------~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~------------~~~~~-~h~~~v 216 (435)
T 1p22_A 163 L-------------ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM------------LNTLI-HHCEAV 216 (435)
T ss_dssp C-------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCE------------EEEEC-CCCSCE
T ss_pred C-------------eEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcE------------EEEEc-CCCCcE
Confidence 1 111111112236888888666666678899999997543110 01111 123357
Q ss_pred EEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCc-eeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCC
Q 015253 219 KQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP-KSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (410)
Q Consensus 219 ~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p-~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~ 297 (410)
..++......+.-+.+|.|..|-..... ...+ ..+... ...|..++....+.++-..+|.|..|-...
T Consensus 217 ~~l~~~~~~l~s~s~dg~i~vwd~~~~~---------~~~~~~~~~~~--~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 285 (435)
T 1p22_A 217 LHLRFNNGMMVTCSKDRSIAVWDMASPT---------DITLRRVLVGH--RAAVNVVDFDDKYIVSASGDRTIKVWNTST 285 (435)
T ss_dssp EEEECCTTEEEEEETTSCEEEEECSSSS---------CCEEEEEECCC--SSCEEEEEEETTEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCEEEEeeCCCcEEEEeCCCCC---------CceeeeEecCC--CCcEEEEEeCCCEEEEEeCCCeEEEEECCc
Confidence 7777777777777889999999432211 1111 112221 146888888778888888999999996432
Q ss_pred CcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCce
Q 015253 298 NFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLA 377 (410)
Q Consensus 298 ~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i 377 (410)
. ..+..+......|..++......++-..+|.|..|-.... + ....+.. ....+
T Consensus 286 ~--------------~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~-~----------~~~~~~~-h~~~v 339 (435)
T 1p22_A 286 C--------------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG-A----------CLRVLEG-HEELV 339 (435)
T ss_dssp C--------------CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC-C----------EEEEECC-CSSCE
T ss_pred C--------------cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC-C----------EEEEEeC-CcCcE
Confidence 1 1111122223367777777777777789999999975431 1 0111111 12234
Q ss_pred eeeeeEEecCCcEEEEEcCCCEEEee
Q 015253 378 VQGLSVLAEVCPTIVQEDTRSCSDII 403 (410)
Q Consensus 378 ~~~~~i~~G~~~t~~l~~~g~v~~wG 403 (410)
.. ++..+...+.-..||.|..|-
T Consensus 340 ~~---~~~~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 340 RC---IRFDNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp EE---EECCSSEEEEEETTSCEEEEE
T ss_pred EE---EEecCCEEEEEeCCCcEEEEE
Confidence 44 555445555556788888884
No 15
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.21 E-value=0.0016 Score=63.43 Aligned_cols=289 Identities=8% Similarity=0.026 Sum_probs=143.8
Q ss_pred ccccCChhHHHHHHHhCCCChhhhhcccccccccCCCCCCCCccccchhhhHHHhhhh---------ccceeeccCccc-
Q 015253 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCA---------LHSIYAGMSRNV- 78 (410)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~y~~~~~~~- 78 (410)
.+..||+||+++|| .||++.||.+.+.+||.+.... ......|+.........+. ....|......+
T Consensus 14 ~~~~lp~~~~~~i~--~~l~~~~l~~~~~v~~~w~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (464)
T 3v7d_B 14 LITSLPFEISLKIF--NYLQFEDIINSLGVSQNWNKII-RKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDR 90 (464)
T ss_dssp HHHHSCHHHHHHHH--TTSCHHHHHHHHTTCHHHHHHH-TTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHH
T ss_pred ChHHCCHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchh
Confidence 46789999999999 9999999999999999998752 2224455543321111000 000000000000
Q ss_pred --------cceeeecccCccccceeeeeccccccceeecCCC-ceEEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCC
Q 015253 79 --------QIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAG-NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPET 148 (410)
Q Consensus 79 --------~g~l~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~-i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~ 148 (410)
...+..|-...+..... .+..-... +..++......+.- .||.|..|-....
T Consensus 91 ~~~~~~~~~~~~~~w~~~~~~~~~~---------~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~--------- 152 (464)
T 3v7d_B 91 LRLSFLENIFILKNWYNPKFVPQRT---------TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINK--------- 152 (464)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCEEE---------EEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTT---------
T ss_pred hHHHHHHhhhhHhhhcCCCcCcceE---------EEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCC---------
Confidence 00111221111111000 00011112 34455545544444 8999999964321
Q ss_pred CceeceeeecCCCCCCEEEEEecCC-eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec---
Q 015253 149 TQCVSFTRINFPSAAHVVQVSASEN-HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--- 224 (410)
Q Consensus 149 ~~~~~p~~v~~~~~~~i~~i~~G~~-h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--- 224 (410)
.+..........|..++...+ ..+.-..||.|..|-....- ....+.. ....|..++.-
T Consensus 153 ----~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~------------~~~~~~~-h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 153 ----KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGC------------CTHVFEG-HNSTVRCLDIVEYK 215 (464)
T ss_dssp ----EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTE------------EEEEECC-CSSCEEEEEEEESS
T ss_pred ----cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCc------------EEEEECC-CCCccEEEEEecCC
Confidence 111111112236777776543 44555789999999654310 1111111 12234544443
Q ss_pred -CCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCce----------eecCC-CCCCCEEEEEeCCCeEEEEECCCcEEE
Q 015253 225 -LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK----------SIAPL-EEVGSVVQIAAGPSYMLAVTGNGVVYS 292 (410)
Q Consensus 225 -~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~----------~v~~~-~~~~~i~~ia~G~~h~~~lt~~G~vy~ 292 (410)
....+.-+.+|.|..|-............. ...+. .+..+ .....|..++......+.-..+|.|+.
T Consensus 216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~v 294 (464)
T 3v7d_B 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEE-HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294 (464)
T ss_dssp SCEEEEEEETTSCEEEEECCCCCCC-------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEE
T ss_pred CCCEEEEEcCCCcEEEeeCCCCccccccccc-CCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEE
Confidence 234555678899999965443222110000 00010 11111 111467778777778888889999999
Q ss_pred EeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecC--CeEEEEeCCCCEEEEecC
Q 015253 293 FGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 293 wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~--~hs~~lt~~G~vy~wG~n 350 (410)
|-.... ..+..+......|..++... ...+.-..+|.|+.|-..
T Consensus 295 wd~~~~--------------~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 295 WDVAQM--------------KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp EETTTT--------------EEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred EECCCC--------------cEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 965321 11222221223566665543 355556788999999643
No 16
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=96.84 E-value=0.00028 Score=46.92 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=35.0
Q ss_pred cccccCChhHHHHHHHhCCCChhhhhcccccccccCCCCCCCCccccc
Q 015253 8 FSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRS 55 (410)
Q Consensus 8 ~~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~~~~~~~~~~~ 55 (410)
..+.+||+||+.+|| .+|++.|+.++..+||.+... .....+|+
T Consensus 7 ~~~~~LP~eil~~I~--~~L~~~dl~~~~~Vck~w~~~--~~~~~lW~ 50 (53)
T 1fs1_A 7 VSWDSLPDELLLGIF--SCLCLPELLKVSGVCKRWYRL--ASDESLWQ 50 (53)
T ss_dssp --CCSSCHHHHHHHH--TTSCGGGHHHHHTTCHHHHHH--HTCGGGC-
T ss_pred CCHHHCCHHHHHHHH--HcCCHHHHHHHHHHHHHHHHH--hCChHHHH
Confidence 467899999999999 999999999999999998875 23334544
No 17
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.66 E-value=0.0032 Score=55.15 Aligned_cols=71 Identities=27% Similarity=0.315 Sum_probs=60.1
Q ss_pred CEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecC
Q 015253 164 HVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSN 243 (410)
Q Consensus 164 ~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n 243 (410)
.|..|+--..|.+++--+++++.||+++.|||-..... .++.++.+|..+++-+..-..+-.||..
T Consensus 310 ~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta--------------gPfla~~AG~~fTVTVn~~nyv~FWGDS 375 (400)
T 4gbf_A 310 PIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA--------------GPYIQLAAGHNFTVTVNTLNQVMFWGDS 375 (400)
T ss_dssp CCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG--------------CCEEEEEECSSEEEEEETTCCEEEEECC
T ss_pred ccccccccccceEEEecCceeEEeccCCCCceecCCCc--------------chHHhHhccCCeEEEEeceeeEEEecCC
Confidence 57788888899999999999999999999999775541 2568999999999999999999999987
Q ss_pred CCCcc
Q 015253 244 THGQL 248 (410)
Q Consensus 244 ~~gql 248 (410)
....|
T Consensus 376 PDNSL 380 (400)
T 4gbf_A 376 PDNSL 380 (400)
T ss_dssp TTSTT
T ss_pred CCcce
Confidence 65554
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.60 E-value=0.68 Score=47.27 Aligned_cols=74 Identities=12% Similarity=-0.027 Sum_probs=36.3
Q ss_pred CCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeee-eEEecCCcEEE-EEcCCCEEEeeeCCC
Q 015253 332 DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGL-SVLAEVCPTIV-QEDTRSCSDIICHDS 407 (410)
Q Consensus 332 ~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~-~i~~G~~~t~~-l~~~g~v~~wG~~~~ 407 (410)
..|++++..+|+||+.|-...++. .+.......+.......+ +-..+. .-..-.+|+.+ +..+|+||..|.+..
T Consensus 457 ~~~~~~~l~~g~i~v~GG~~~~~~-~~~~~~~~~v~~ydp~t~-~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~ 532 (656)
T 1k3i_A 457 TFHTSVVLPDGSTFITGGQRRGIP-FEDSTPVFTPEIYVPEQD-TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLC 532 (656)
T ss_dssp BSCEEEECTTSCEEEECCBSBCCT-TCCCSBCCCCEEEEGGGT-EEEECCCCSSCCCTTEEEEECTTSCEEEEECCCC
T ss_pred ccCCeEECCCCCEEEECCcccCcC-cCCCCcccceEEEcCCCC-ceeecCCCCCccccccHhhcCCCcEEEecCCCCC
Confidence 467878878999999995443321 111111111111111000 111000 00123467654 558999999998643
No 19
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.56 E-value=0.57 Score=44.76 Aligned_cols=239 Identities=7% Similarity=-0.021 Sum_probs=133.8
Q ss_pred CceEEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCC
Q 015253 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190 (410)
Q Consensus 112 ~i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n 190 (410)
.|..++......+.- .||.|..|-....- ....+. .....|..++......+.-..||.|..|-..
T Consensus 175 ~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~------------~~~~~~-~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 175 SVLCLQYDERVIITGSSDSTVRVWDVNTGE------------MLNTLI-HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp CEEEEECCSSEEEEEETTSCEEEEESSSCC------------EEEEEC-CCCSCEEEEECCTTEEEEEETTSCEEEEECS
T ss_pred cEEEEEECCCEEEEEcCCCeEEEEECCCCc------------EEEEEc-CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCC
Confidence 477777744433333 89999999654210 011111 1223688888877777777899999999654
Q ss_pred CCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCC
Q 015253 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGS 270 (410)
Q Consensus 191 ~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 270 (410)
... .. .+.....-....|..++....+.+.-+.+|.|..|-.... .....+.... ..
T Consensus 242 ~~~---------~~-~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~~~~--~~ 298 (435)
T 1p22_A 242 SPT---------DI-TLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTC-----------EFVRTLNGHK--RG 298 (435)
T ss_dssp SSS---------CC-EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTC-----------CEEEEEECCS--SC
T ss_pred CCC---------Cc-eeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcC-----------cEEEEEcCCC--Cc
Confidence 311 01 1111111123356777777777777788999999953221 1111122211 46
Q ss_pred EEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecC
Q 015253 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 271 i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n 350 (410)
|..++......++-..+|.|..|-.... ..+..+......|..++....+.+.-..+|.|..|-..
T Consensus 299 v~~~~~~~~~l~~g~~dg~i~iwd~~~~--------------~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 299 IACLQYRDRLVVSGSSDNTIRLWDIECG--------------ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTC--------------CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHH
T ss_pred EEEEEeCCCEEEEEeCCCeEEEEECCCC--------------CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECC
Confidence 7788877778888889999999965431 11122222333677888767777777889999999743
Q ss_pred CCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCCCEEEeeeCC
Q 015253 351 YCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTRSCSDIICHD 406 (410)
Q Consensus 351 ~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g~v~~wG~~~ 406 (410)
....... .....+..........+.. ++..+...+.-..||.|..|-...
T Consensus 365 ~~~~~~~---~~~~~~~~~~~~h~~~v~~---l~~~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 365 AALDPRA---PAGTLCLRTLVEHSGRVFR---LQFDEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp HHTSTTS---CTTTTEEEEECCCSSCCCC---EEECSSCEEECCSSSEEEEEC---
T ss_pred CCCCccc---cccchheeeccCCCCCeEE---EEeCCCEEEEEeCCCEEEEEECCC
Confidence 2110000 0000011111112234555 666555555556789999986543
No 20
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}
Probab=96.42 E-value=0.0074 Score=52.91 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=60.0
Q ss_pred CceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeC
Q 015253 216 VPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGS 295 (410)
Q Consensus 216 ~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~ 295 (410)
..|.+|+.-..|.+++--+++++.||+++.||+-... -. .+..++.+|.++++-+..-+.+--||.
T Consensus 309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~------------ta--gPfla~~AG~~fTVTVn~~nyv~FWGD 374 (400)
T 4gbf_A 309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDD------------HA--GPYIQLAAGHNFTVTVNTLNQVMFWGD 374 (400)
T ss_dssp SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCG------------GG--CCEEEEEECSSEEEEEETTCCEEEEEC
T ss_pred CccccccccccceEEEecCceeEEeccCCCCceecCC------------Cc--chHHhHhccCCeEEEEeceeeEEEecC
Confidence 4678899999999999999999999999999984321 11 478999999999999999999999998
Q ss_pred CCCccc
Q 015253 296 GSNFCL 301 (410)
Q Consensus 296 n~~gqL 301 (410)
.....|
T Consensus 375 SPDNSL 380 (400)
T 4gbf_A 375 SPDNSL 380 (400)
T ss_dssp CTTSTT
T ss_pred CCCcce
Confidence 765444
No 21
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.65 E-value=1.6 Score=41.63 Aligned_cols=186 Identities=8% Similarity=-0.004 Sum_probs=111.0
Q ss_pred CceEEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeCC
Q 015253 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDN 190 (410)
Q Consensus 112 ~i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~n 190 (410)
.|..++......+.- .||.|+.|-....- ....+. .....|..++......+.-+.||.|..|-..
T Consensus 161 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~------------~~~~~~-~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 161 GVWSSQMRDNIIISGSTDRTLKVWNAETGE------------CIHTLY-GHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEETTTTE------------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEESS
T ss_pred CEEEEEecCCEEEEEeCCCeEEEEECCcCc------------EEEEEC-CCCCcEEEEEecCCEEEEEeCCCEEEEEECC
Confidence 466666655544444 89999999643210 011111 1223677777777777778899999999654
Q ss_pred CCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCC
Q 015253 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGS 270 (410)
Q Consensus 191 ~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 270 (410)
..-. . ..+. .....|..++......+.-+.+|.|..|-.... .....+... ...
T Consensus 228 ~~~~---------~---~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~~--~~~ 281 (445)
T 2ovr_B 228 TGQC---------L---HVLM-GHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE-----------TCLHTLQGH--TNR 281 (445)
T ss_dssp SCCE---------E---EEEE-CCSSCEEEEEECSSCEEEEETTSCEEEEEGGGT-----------EEEEEECCC--SSC
T ss_pred CCcE---------E---EEEc-CCcccEEEEEECCCEEEEEcCCCEEEEEECCCC-----------cEeEEecCC--CCc
Confidence 3110 0 0111 123346666666666677788999999943211 011112211 146
Q ss_pred EEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecC
Q 015253 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 271 i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n 350 (410)
|..++....+.+.-..+|.|..|-..... .+..+......+..++......+.-..+|.|..|-..
T Consensus 282 v~~~~~~~~~l~~~~~d~~i~i~d~~~~~--------------~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~ 347 (445)
T 2ovr_B 282 VYSLQFDGIHVVSGSLDTSIRVWDVETGN--------------CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 347 (445)
T ss_dssp EEEEEECSSEEEEEETTSCEEEEETTTCC--------------EEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred eEEEEECCCEEEEEeCCCeEEEEECCCCC--------------EEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECC
Confidence 88888877788888899999999653311 1111222233566777777777777889999999753
No 22
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.74 E-value=0.36 Score=49.79 Aligned_cols=18 Identities=6% Similarity=-0.044 Sum_probs=14.9
Q ss_pred CCeEEEEECCCcEEEEeC
Q 015253 278 PSYMLAVTGNGVVYSFGS 295 (410)
Q Consensus 278 ~~h~~~lt~~G~vy~wG~ 295 (410)
..|++++..++++|.+|-
T Consensus 598 ~~~~~~~~~~~~iyv~GG 615 (695)
T 2zwa_A 598 YGSQIKYITPRKLLIVGG 615 (695)
T ss_dssp BSCEEEEEETTEEEEECC
T ss_pred ccceEEEeCCCEEEEECC
Confidence 578888887799999985
No 23
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.72 E-value=3.9 Score=37.05 Aligned_cols=257 Identities=9% Similarity=-0.080 Sum_probs=117.5
Q ss_pred CceEEEecCC-----eeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC---CeeEEEEcC
Q 015253 112 GNMQITTGRY-----HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---NHAAFVLQS 181 (410)
Q Consensus 112 ~i~~ia~G~~-----h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~h~~~lt~~ 181 (410)
.|..++-... ..++. .||.|..|-....- ....+. .....|..++... ...+.-..+
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~------------~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~d 137 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ------------CIKHYV-GHGNAINELKFHPRDPNLLLSVSKD 137 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC------------EEEEEE-SCCSCEEEEEECSSCTTEEEEEETT
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce------------Eeeeec-CCCCcEEEEEECCCCCCEEEEEeCC
Confidence 3555554333 23444 88999999643210 111111 1223677777643 445556789
Q ss_pred CcEEEEeCCCCCcccCCCCCCceeccEEec--ccCCCceEEEEec--CCeEEEEEcCCcEEEeecCCCCccC-------C
Q 015253 182 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVE--ALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLG-------H 250 (410)
Q Consensus 182 G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~--~~~~~~i~~i~~G--~~~s~~lt~~G~v~~wG~n~~gqlG-------~ 250 (410)
|.|+.|-..... ....+. ......|..++.. ..+.+....+|.|..|-......+. .
T Consensus 138 g~i~iwd~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 205 (366)
T 3k26_A 138 HALRLWNIQTDT------------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205 (366)
T ss_dssp SCEEEEETTTTE------------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTC
T ss_pred CeEEEEEeecCe------------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEe
Confidence 999999654311 111111 1123346666654 3345555678999999643211110 0
Q ss_pred CCCC--CC------CCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCC
Q 015253 251 GDTL--DR------PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 322 (410)
Q Consensus 251 ~~~~--~~------~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~ 322 (410)
.... .. ..|..-........|..++......+.-..+|.|..|-.....+.-............+..+....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (366)
T 3k26_A 206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 285 (366)
T ss_dssp CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred cCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence 0000 00 000000000011356666655667777788999999975443221110011111112222222111
Q ss_pred ccEEE--EEec--CCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCC-CCceeeeeeEEec--CCcEEEEEc
Q 015253 323 IHVVR--VSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK-SHLAVQGLSVLAE--VCPTIVQED 395 (410)
Q Consensus 323 ~~i~~--i~~G--~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~-~~~i~~~~~i~~G--~~~t~~l~~ 395 (410)
..|.. ++.. ....++-..+|.|+.|-......+ ......+.... ...+.. ++.. +..-+.-..
T Consensus 286 ~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------~~~~~~~~~~~~~~~v~~---~~~s~~~~~l~s~~~ 355 (366)
T 3k26_A 286 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH-------KAKCTTLTHHKCGAAIRQ---TSFSRDSSILIAVCD 355 (366)
T ss_dssp CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG-------GCEEEEECCTTCCSCEEE---EEECTTSSEEEEEET
T ss_pred CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc-------cccceEEcccccCCceEE---EEeCCCCCeEEEEeC
Confidence 12222 2333 445555678899999975431100 00111222211 233444 4443 333444557
Q ss_pred CCCEEEee
Q 015253 396 TRSCSDII 403 (410)
Q Consensus 396 ~g~v~~wG 403 (410)
||.|+.|-
T Consensus 356 dg~i~iwd 363 (366)
T 3k26_A 356 DASIWRWD 363 (366)
T ss_dssp TSEEEEEE
T ss_pred CCEEEEEE
Confidence 88888884
No 24
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.53 E-value=3.9 Score=42.06 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=51.9
Q ss_pred CCeEEEEEc-CCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEE----EeCCCeEEEEECCCcEEEEeCCCCc
Q 015253 225 LNFTGFLTI-RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI----AAGPSYMLAVTGNGVVYSFGSGSNF 299 (410)
Q Consensus 225 ~~~s~~lt~-~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i----a~G~~h~~~lt~~G~vy~wG~n~~g 299 (410)
..|+++... +|+||.+|-.....- ...+. .+-.+.. .....+ ..-..|++++..+|++|++|-....
T Consensus 441 ~~hs~~~~~~~~~lyv~GG~~~~~~---~~~dv----~~yd~~t-~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~ 512 (695)
T 2zwa_A 441 MCHTFTTISRNNQLLLIGGRKAPHQ---GLSDN----WIFDMKT-REWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEG 512 (695)
T ss_dssp BSCEEEEETTTTEEEEECCBSSTTC---BCCCC----EEEETTT-TEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSS
T ss_pred cceEEEEEccCCEEEEEcCCCCCCC---ccccE----EEEeCCC-CcEEECCCCCCCcccceEEEEcCCEEEEECCCCCC
Confidence 468888776 899999984321110 00000 0000000 112222 1345688877668999999843211
Q ss_pred ccCCCCCCCccccEEeeccccCCccEEEEEe-------cCCeE-EEEeCC-CCEEEEec
Q 015253 300 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSA-------GDEHV-VALDSS-GYVYTWGK 349 (410)
Q Consensus 300 qLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~-------G~~hs-~~lt~~-G~vy~wG~ 349 (410)
. .+..++........+.. -..|+ +++..+ +++|++|-
T Consensus 513 ~-------------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG 558 (695)
T 2zwa_A 513 P-------------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGG 558 (695)
T ss_dssp C-------------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECC
T ss_pred C-------------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECC
Confidence 1 11112112223444432 24566 455655 89999994
No 25
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=93.25 E-value=0.013 Score=53.18 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=32.8
Q ss_pred ccccCChhHHHHHHHhCCCChhhhhcccccccccCCC
Q 015253 9 SIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (410)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~ 45 (410)
++.+||+||+++|| .||+|+||..+..|||+++..
T Consensus 4 ~l~~LP~ei~l~Il--sfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYIL--SFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHH--HTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHH--hcCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999 999999999999999998876
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=91.91 E-value=6.5 Score=34.98 Aligned_cols=196 Identities=7% Similarity=0.007 Sum_probs=96.3
Q ss_pred EecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeec-CCCCCCEEEEEecC-CeeEEEEcCCcEEEEeCCCCC
Q 015253 117 TTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRIN-FPSAAHVVQVSASE-NHAAFVLQSGQVFTCGDNSSF 193 (410)
Q Consensus 117 a~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~-~~~~~~i~~i~~G~-~h~~~lt~~G~vy~wG~n~~g 193 (410)
..+.-..+++ .||++++.+......+....... ..++. ......|..++... ...++...+|.|..|-.....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~ 83 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRH----ARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG 83 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSE----EEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTT
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCc----cccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCC
Confidence 3445566778 89999988875443333221111 11111 22233566666543 233444458999999765421
Q ss_pred cccCCCCCCceeccEEecc-cCCCceEEEEecC--CeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCC
Q 015253 194 CCGHRDTNRPIFRPRLVEA-LKGVPCKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGS 270 (410)
Q Consensus 194 qlG~~~~~~~~~~p~~v~~-~~~~~i~~i~~G~--~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~ 270 (410)
.. .....+.. .....|..++... ...++-..+|.|+.|-.... .......+... ...
T Consensus 84 ~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---------~~~~~~~~~~~--~~~ 143 (337)
T 1gxr_A 84 NK---------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP---------TPRIKAELTSS--APA 143 (337)
T ss_dssp CC---------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------EEEEEEECS--SSC
T ss_pred ce---------eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---------CcceeeecccC--CCc
Confidence 10 00011110 1123455555443 33444567888988843211 00001111111 135
Q ss_pred EEEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEec--CCeEEEEeCCCCEEE
Q 015253 271 VVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG--DEHVVALDSSGYVYT 346 (410)
Q Consensus 271 i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G--~~hs~~lt~~G~vy~ 346 (410)
|..++.. ..+.++-..+|.|+.|-.... ..+..+......|..++.. ....+.-..+|.|+.
T Consensus 144 i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~--------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~ 209 (337)
T 1gxr_A 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQ--------------TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCC--------------ceeeeeecccCceEEEEECCCCCEEEEEecCCcEEE
Confidence 6666654 345566678899999965321 1111122122356666654 334455567889999
Q ss_pred EecC
Q 015253 347 WGKG 350 (410)
Q Consensus 347 wG~n 350 (410)
|-..
T Consensus 210 ~d~~ 213 (337)
T 1gxr_A 210 WDLR 213 (337)
T ss_dssp EETT
T ss_pred EECC
Confidence 9653
No 27
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=90.85 E-value=8.9 Score=34.53 Aligned_cols=207 Identities=7% Similarity=-0.037 Sum_probs=103.0
Q ss_pred CceEEEec------CCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCC-CCCCEEEEEecCC------eeEE
Q 015253 112 GNMQITTG------RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP-SAAHVVQVSASEN------HAAF 177 (410)
Q Consensus 112 ~i~~ia~G------~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~i~~G~~------h~~~ 177 (410)
.|..|+.- ....++- .++.|..|-......+ ........+ ....|..++.... ..+.
T Consensus 20 ~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 20 PLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI---------RLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp CEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE---------EEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred ceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE---------EeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 46666654 3445555 8889999965422111 111111111 2235666665433 4455
Q ss_pred EEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec---CCeEEEEEcCCcEEEeecCCCCccCCCCCC
Q 015253 178 VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQLGHGDTL 254 (410)
Q Consensus 178 lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~ 254 (410)
-..+|.|..|-.... .. ...+.. ....|..++.. ....+.-..+|.|+.|-....
T Consensus 91 ~~~dg~i~v~d~~~~---------~~---~~~~~~-~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--------- 148 (366)
T 3k26_A 91 AGSRGIIRIINPITM---------QC---IKHYVG-HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD--------- 148 (366)
T ss_dssp EETTCEEEEECTTTC---------CE---EEEEES-CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT---------
T ss_pred ecCCCEEEEEEchhc---------eE---eeeecC-CCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC---------
Confidence 578899999964431 10 111111 23356666654 344555677899999954221
Q ss_pred CCCCceeecC-CCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCcccCC-------CC--CCCccccEE-----eec
Q 015253 255 DRPTPKSIAP-LEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGH-------GE--QHDELQPRA-----IQT 317 (410)
Q Consensus 255 ~~~~p~~v~~-~~~~~~i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~-------g~--~~~~~~p~~-----i~~ 317 (410)
.....+.. ......|..++.. ..+.+....+|.|+.|-......+.. .. ......+.. ...
T Consensus 149 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 149 --TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp --EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred --eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 11111110 1112467777765 34566667899999996543211100 00 000000000 000
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCCEEEEecCC
Q 015253 318 FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 351 (410)
Q Consensus 318 ~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~ 351 (410)
.......|..++......+.-..+|.|..|-...
T Consensus 227 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 227 RDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp CSSCSSCCCEEEEETTEEEEECSSSEEEEEEESS
T ss_pred ccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCC
Confidence 1112224555555466667777899999998644
No 28
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=89.79 E-value=14 Score=35.01 Aligned_cols=200 Identities=9% Similarity=0.017 Sum_probs=108.0
Q ss_pred CceEEEecCCeeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec----CCeeEEEEcCCcEE
Q 015253 112 GNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS----ENHAAFVLQSGQVF 185 (410)
Q Consensus 112 ~i~~ia~G~~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~h~~~lt~~G~vy 185 (410)
.|..++......++. .||.|..|-.... ............|..++.- ....+.-+.||.|.
T Consensus 164 ~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~-------------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~ 230 (464)
T 3v7d_B 164 GVWALKYAHGGILVSGSTDRTVRVWDIKKG-------------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 230 (464)
T ss_dssp CEEEEEECSTTEEEEEETTSCEEEEETTTT-------------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEE
T ss_pred CEEEEEEcCCCEEEEEeCCCCEEEEECCCC-------------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEE
Confidence 477777654444444 8999999964321 1111111122356555543 24455667899999
Q ss_pred EEeCCCCCcccCCCCCC--------ceeccEEeccc--CCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCC
Q 015253 186 TCGDNSSFCCGHRDTNR--------PIFRPRLVEAL--KGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLD 255 (410)
Q Consensus 186 ~wG~n~~gqlG~~~~~~--------~~~~p~~v~~~--~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~ 255 (410)
.|-.............. ....|..+..+ ....+..++......+.-..+|.|..|-.....
T Consensus 231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~--------- 301 (464)
T 3v7d_B 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK--------- 301 (464)
T ss_dssp EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTE---------
T ss_pred EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------
Confidence 99765432211100000 00001011111 123466777667777777889999999542211
Q ss_pred CCCceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCC
Q 015253 256 RPTPKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE 333 (410)
Q Consensus 256 ~~~p~~v~~~~~~~~i~~ia~G~--~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~ 333 (410)
....+... ...|..++... ...+.-..+|.|+.|-.... ..+..+......|..++....
T Consensus 302 --~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--------------~~~~~~~~h~~~v~~~~~~~~ 363 (464)
T 3v7d_B 302 --CLYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWDLENG--------------ELMYTLQGHTALVGLLRLSDK 363 (464)
T ss_dssp --EEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTT--------------EEEEEECCCSSCEEEEEECSS
T ss_pred --EEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC--------------cEEEEEeCCCCcEEEEEEcCC
Confidence 01111111 14566666543 45666678899999954321 122223223346778888777
Q ss_pred eEEEEeCCCCEEEEecCC
Q 015253 334 HVVALDSSGYVYTWGKGY 351 (410)
Q Consensus 334 hs~~lt~~G~vy~wG~n~ 351 (410)
+.+.-..||.|..|-...
T Consensus 364 ~l~s~s~dg~v~vwd~~~ 381 (464)
T 3v7d_B 364 FLVSAAADGSIRGWDAND 381 (464)
T ss_dssp EEEEEETTSEEEEEETTT
T ss_pred EEEEEeCCCcEEEEECCC
Confidence 878888999999997543
No 29
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=89.13 E-value=12 Score=33.41 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=12.6
Q ss_pred CeeEEEECCcEEEEeCC
Q 015253 121 YHTLLISNSSVFSCGSS 137 (410)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (410)
.|++++.+++||++|-.
T Consensus 48 ~~~~~~~~~~lyv~GG~ 64 (306)
T 3ii7_A 48 DAACVFWDNVVYILGGS 64 (306)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred eeEEEEECCEEEEEeCC
Confidence 45555588899999954
No 30
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=88.38 E-value=0.093 Score=47.91 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=39.5
Q ss_pred cccccCChhHHHHHHHhCCCChhhhh-cccccccccCCCCCCCCccccchhh
Q 015253 8 FSIEELPSHLIFEILTSGRLSAVDLA-HLELTSKTFGGSHGLYPQKFRSLVD 58 (410)
Q Consensus 8 ~~~~~lp~~i~~~~~~~~~l~~~dl~-~l~~t~~~f~~~~~~~~~~~~~~~~ 58 (410)
..+.+||+|||..|| .+|++.+|. +...+||.+..+ .....+|+..+
T Consensus 49 ~~~~~LP~ell~~Il--~~Lp~~~L~~r~~~VCk~Wr~l--~~~~~~w~~~~ 96 (297)
T 2e31_A 49 EYLAELPEPLLLRVL--AELPATELVQACRLVCLRWKEL--VDGAPLWLLKC 96 (297)
T ss_dssp CCTTSSCHHHHHHHH--HTSCHHHHHHTGGGTCHHHHHH--HTSHHHHHHHH
T ss_pred cChhhCCHHHHHHHH--HcCCHHHHHHHHHHHhHHHHHH--hcChHHHHHHh
Confidence 467899999999999 899999999 999999999876 45556665554
No 31
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=86.64 E-value=20 Score=33.21 Aligned_cols=148 Identities=12% Similarity=0.069 Sum_probs=83.9
Q ss_pred EEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec--CCeEEEEEcCCcEEEeec
Q 015253 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGS 242 (410)
Q Consensus 165 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~s~~lt~~G~v~~wG~ 242 (410)
+..++....+.++...+|.|+.|-....- ....+.......|..++.. ..+.++-+.+|.|..|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 44455556778888899999999764310 1111111123345555543 334555567899999954
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCC
Q 015253 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 322 (410)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~ 322 (410)
... .....+... ...|..++......+.-..+|.|+.|-..... .+ +..+....
T Consensus 164 ~~~-----------~~~~~~~~~--~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~~--~~~~~~~~ 217 (401)
T 4aez_A 164 ESQ-----------TKLRTMAGH--QARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN-----------HQ--IGTLQGHS 217 (401)
T ss_dssp TTC-----------CEEEEECCC--SSCEEEEEEETTEEEEEETTSEEEEEETTSSS-----------CE--EEEEECCS
T ss_pred cCC-----------eEEEEecCC--CCceEEEEECCCEEEEEcCCCCEEEEecccCc-----------ce--eeEEcCCC
Confidence 321 111122221 14688888877777778889999999654211 11 11111122
Q ss_pred ccEEEEEecC--CeEEEEeCCCCEEEEecC
Q 015253 323 IHVVRVSAGD--EHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 323 ~~i~~i~~G~--~hs~~lt~~G~vy~wG~n 350 (410)
..|..++... .+.+.-..+|.|+.|-..
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 3566666543 344555678999999754
No 32
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=86.28 E-value=21 Score=33.08 Aligned_cols=147 Identities=10% Similarity=0.010 Sum_probs=84.5
Q ss_pred ceEEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC--CeeEEEEcCCcEEEEeC
Q 015253 113 NMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVFTCGD 189 (410)
Q Consensus 113 i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~h~~~lt~~G~vy~wG~ 189 (410)
+..++-...+.++. .+|.|+.|-....- ............|..++... .+.++-+.+|.|..|-.
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~------------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGS------------VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCC------------EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCc------------EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence 33466556777777 99999999754211 11222232334677776543 44555567999999965
Q ss_pred CCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCC
Q 015253 190 NSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVG 269 (410)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~ 269 (410)
.... ....+. .....|..++......+.-..+|.|+.|-....+ .....+.... .
T Consensus 164 ~~~~------------~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------~~~~~~~~~~--~ 218 (401)
T 4aez_A 164 ESQT------------KLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIAN----------HQIGTLQGHS--S 218 (401)
T ss_dssp TTCC------------EEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSS----------CEEEEEECCS--S
T ss_pred cCCe------------EEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCc----------ceeeEEcCCC--C
Confidence 4311 111111 1233577777766666777889999999543211 1111122211 4
Q ss_pred CEEEEEeC--CCeEEEEECCCcEEEEeCC
Q 015253 270 SVVQIAAG--PSYMLAVTGNGVVYSFGSG 296 (410)
Q Consensus 270 ~i~~ia~G--~~h~~~lt~~G~vy~wG~n 296 (410)
.|..++.. ..+.+.-..+|.|+.|-..
T Consensus 219 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 247 (401)
T 4aez_A 219 EVCGLAWRSDGLQLASGGNDNVVQIWDAR 247 (401)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CeeEEEEcCCCCEEEEEeCCCeEEEccCC
Confidence 57777664 3455566778999999654
No 33
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=85.65 E-value=14 Score=33.21 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=12.5
Q ss_pred CCeEEEEEcCCcEEEeec
Q 015253 225 LNFTGFLTIRGHVHTCGS 242 (410)
Q Consensus 225 ~~~s~~lt~~G~v~~wG~ 242 (410)
..|+++. .+++||.+|-
T Consensus 150 ~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 150 YGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp ESCEEEE-ETTEEEEECC
T ss_pred cccEEEE-ECCEEEEEcC
Confidence 3566665 5889999984
No 34
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=84.38 E-value=22 Score=31.75 Aligned_cols=60 Identities=10% Similarity=0.093 Sum_probs=30.1
Q ss_pred CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEe----cCCeEEEEeCCCCEEEEec
Q 015253 278 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA----GDEHVVALDSSGYVYTWGK 349 (410)
Q Consensus 278 ~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~----G~~hs~~lt~~G~vy~wG~ 349 (410)
..|++++. ++++|.+|-.... . ....+..++........+.. -..|+++.. ++++|..|-
T Consensus 188 ~~~~~~~~-~~~iyv~GG~~~~-------~---~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG 251 (315)
T 4asc_A 188 SLFGATVH-DGRIIVAAGVTDT-------G---LTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL-VGTLYAIGG 251 (315)
T ss_dssp BSCEEEEE-TTEEEEEEEECSS-------S---EEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEE
T ss_pred hceEEEEE-CCEEEEEeccCCC-------C---ccceEEEEECCCCeEEECCCCCCcccceeEEEE-CCEEEEECC
Confidence 45666655 7799999843211 0 01122222222223333321 234666554 679999984
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=84.31 E-value=21 Score=31.44 Aligned_cols=192 Identities=7% Similarity=-0.034 Sum_probs=95.8
Q ss_pred CCceEEEecCCe-eEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecC-CCCCCEEEEEecC--CeeEEEEcCCcEE
Q 015253 111 AGNMQITTGRYH-TLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF-PSAAHVVQVSASE--NHAAFVLQSGQVF 185 (410)
Q Consensus 111 ~~i~~ia~G~~h-~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~-~~~~~i~~i~~G~--~h~~~lt~~G~vy 185 (410)
..|..++-.... .++. .+|.|..|-....... . ....+.. .....|..++... ...+.-..+|.|+
T Consensus 52 ~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~------~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNK------S---PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCC------S---CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred CceEEEEEecCCcEEEEcCCCeEEEEECCCCCce------e---eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 346666655443 3444 8888999965432110 0 1111111 2223576666653 3344456789999
Q ss_pred EEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec--CCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeec
Q 015253 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIA 263 (410)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~ 263 (410)
.|-.... ... ....+. .....|..++.. ..+.+.-+.+|.|+.|-.... .....+.
T Consensus 123 ~~d~~~~---------~~~-~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~-----------~~~~~~~ 180 (337)
T 1gxr_A 123 IWDLAAP---------TPR-IKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ-----------TLVRQFQ 180 (337)
T ss_dssp EEECCCC-----------E-EEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-----------EEEEEEC
T ss_pred EEECCCC---------Ccc-eeeecc-cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-----------ceeeeee
Confidence 9965431 000 001111 112235555543 344555667899999953221 1111222
Q ss_pred CCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEec--CCeEEEEe
Q 015253 264 PLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG--DEHVVALD 339 (410)
Q Consensus 264 ~~~~~~~i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G--~~hs~~lt 339 (410)
.. ...|..++.. ....++...+|.|+.|-..... .+..+. ....+..++.. ....++-.
T Consensus 181 ~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--------------~~~~~~-~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 181 GH--TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR--------------QLQQHD-FTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp CC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--------------EEEEEE-CSSCEEEEEECTTSSEEEEEE
T ss_pred cc--cCceEEEEECCCCCEEEEEecCCcEEEEECCCCc--------------eEeeec-CCCceEEEEECCCCCEEEEEc
Confidence 21 1457777664 3456666789999999653311 111111 11245555543 33444556
Q ss_pred CCCCEEEEecC
Q 015253 340 SSGYVYTWGKG 350 (410)
Q Consensus 340 ~~G~vy~wG~n 350 (410)
.+|.++.|-..
T Consensus 244 ~~~~i~~~~~~ 254 (337)
T 1gxr_A 244 ESSNVEVLHVN 254 (337)
T ss_dssp TTSCEEEEETT
T ss_pred CCCcEEEEECC
Confidence 78888888654
No 36
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=84.13 E-value=21 Score=31.17 Aligned_cols=185 Identities=9% Similarity=0.012 Sum_probs=97.9
Q ss_pred CCEEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEe---cCCeEEEEEcCCcEEE
Q 015253 163 AHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA---GLNFTGFLTIRGHVHT 239 (410)
Q Consensus 163 ~~i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~---G~~~s~~lt~~G~v~~ 239 (410)
..|..++......+.-..+|.|+.|-. + . ....+. .....+..+.. .....+.-+.+|.|..
T Consensus 105 ~~i~~~~~~~~~l~~~~~d~~i~~~d~---~--------~---~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i 169 (313)
T 3odt_A 105 GNVCSLSFQDGVVISGSWDKTAKVWKE---G--------S---LVYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKL 169 (313)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEET---T--------E---EEEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCEEEEEecCCEEEEEeCCCCEEEEcC---C--------c---EEEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEE
Confidence 367788876777777788999999951 1 0 001111 11223444443 4555666678899999
Q ss_pred eecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC-CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeecc
Q 015253 240 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP-SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTF 318 (410)
Q Consensus 240 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~-~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~ 318 (410)
|-.. .....+.... ...|..++... ...++-..+|.|+.|-.... ..+..+
T Consensus 170 ~d~~-------------~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~--------------~~~~~~ 221 (313)
T 3odt_A 170 WQND-------------KVIKTFSGIH-NDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG--------------DVLRTY 221 (313)
T ss_dssp EETT-------------EEEEEECSSC-SSCEEEEEEEETTEEEEEETTSEEEEEETTTC--------------CEEEEE
T ss_pred EecC-------------ceEEEEeccC-cccEEEEEEcCCCeEEEccCCCeEEEEECCch--------------hhhhhh
Confidence 9310 0111111111 13555555432 23566678899999965331 111112
Q ss_pred ccCCccEEEEEecCC-eEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCC-cEEEEEcC
Q 015253 319 RRKGIHVVRVSAGDE-HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVC-PTIVQEDT 396 (410)
Q Consensus 319 ~~~~~~i~~i~~G~~-hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~-~t~~l~~~ 396 (410)
......|..++.... ..++-..+|.|+.|-.... .+...-......+.. ++.-.. ..++-..|
T Consensus 222 ~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~------------~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~d 286 (313)
T 3odt_A 222 EGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG------------SLKQVITLPAISIWS---VDCMSNGDIIVGSSD 286 (313)
T ss_dssp ECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTC------------CEEEEEECSSSCEEE---EEECTTSCEEEEETT
T ss_pred hcCCceEEEEEEecCCCEEEEecCCEEEEEECCCC------------ceeEEEeccCceEEE---EEEccCCCEEEEeCC
Confidence 212335777766544 4555678899999964321 111111112223444 444322 35556788
Q ss_pred CCEEEeeeC
Q 015253 397 RSCSDIICH 405 (410)
Q Consensus 397 g~v~~wG~~ 405 (410)
|.|+.|-..
T Consensus 287 g~i~iw~~~ 295 (313)
T 3odt_A 287 NLVRIFSQE 295 (313)
T ss_dssp SCEEEEESC
T ss_pred CcEEEEeCC
Confidence 999998544
No 37
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=81.17 E-value=9.4 Score=30.46 Aligned_cols=109 Identities=13% Similarity=0.074 Sum_probs=62.2
Q ss_pred CCCceEEEEecC-CeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC-CCeEEEEECCCcEE
Q 015253 214 KGVPCKQVTAGL-NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-PSYMLAVTGNGVVY 291 (410)
Q Consensus 214 ~~~~i~~i~~G~-~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G-~~h~~~lt~~G~vy 291 (410)
+.....++-|-. .+.+-|..||.|-.-... .+...--++.... ..++.|.|- ..+-+++..+|+||
T Consensus 28 ~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~----------~~~~s~lei~sv~--~G~V~L~g~~sg~yL~mn~~G~l~ 95 (142)
T 3p6j_A 28 EGNGEVLLKSTETGQYLRINPDGTVDGTRDR----------SDTHIQFQISPEG--NGEVLLKSTETGQYLRINPDGTVD 95 (142)
T ss_dssp CSTTCEEEEETTTCCEEEECTTSBEEEECCT----------TCGGGCEEEEEEE--TTEEEEEETTTTEEEEECTTSBEE
T ss_pred ccCcEEEEEEeCCCEEEEECCCCCEeeecCC----------CCCceEEEEEEcc--CCEEEEEEecCCEEEeECCCCCEe
Confidence 345668888876 677788889999754221 1111111222211 257888875 57888999999999
Q ss_pred EEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEE
Q 015253 292 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346 (410)
Q Consensus 292 ~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~ 346 (410)
+--. ..+......+.........+..+.. ...+|++++|++|.
T Consensus 96 Gs~~----------~t~ecsflEi~~en~y~v~i~g~~s--g~YLamnk~Grlyg 138 (142)
T 3p6j_A 96 GTRD----------RSDTHIQFQISPEGNGEVLLKSTET--GQYLRINPDGTVDG 138 (142)
T ss_dssp EECC----------TTCGGGCEEEEECSTTCEEEEETTT--CCEEEECTTSBEEE
T ss_pred eccc----------CCCCceEEEEEeecCcEEEEEEecC--CEEEEECCCcCCcc
Confidence 7421 1122233333322212222333323 34899999999995
No 38
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=79.84 E-value=40 Score=31.55 Aligned_cols=210 Identities=8% Similarity=0.010 Sum_probs=101.6
Q ss_pred ceEEEecC--C-eeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec---CCeeEEEEcCCcEE
Q 015253 113 NMQITTGR--Y-HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQSGQVF 185 (410)
Q Consensus 113 i~~ia~G~--~-h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~h~~~lt~~G~vy 185 (410)
|..++-.. . +.+.- .||.|..|-.+...... ....+..........|..|+.. ....+....+|.|+
T Consensus 184 v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~ 257 (430)
T 2xyi_A 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257 (430)
T ss_dssp CCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence 55555432 2 33333 78999999765422111 0011111111222367777764 34445556899999
Q ss_pred EEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCC---eEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceee
Q 015253 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN---FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (410)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~---~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v 262 (410)
.|-....... . ....+. .....|..|+.... ..+.-..+|.|..|-....++ ....+
T Consensus 258 i~d~~~~~~~------~---~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~----------~~~~~ 317 (430)
T 2xyi_A 258 IWDTRNNNTS------K---PSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL----------KLHSF 317 (430)
T ss_dssp EEETTCSCSS------S---CSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------CSEEE
T ss_pred EEECCCCCCC------c---ceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------CeEEe
Confidence 9976542100 0 001111 11234555555432 233446788999996433211 11112
Q ss_pred cCCCCCCCEEEEEeCCC---eEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCC---eEE
Q 015253 263 APLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---HVV 336 (410)
Q Consensus 263 ~~~~~~~~i~~ia~G~~---h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~---hs~ 336 (410)
... ...|..|+...+ ..+.-..+|.|..|-....+..-.........|..+..+......|..++.... ..+
T Consensus 318 ~~h--~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 395 (430)
T 2xyi_A 318 ESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395 (430)
T ss_dssp ECC--SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEE
T ss_pred ecC--CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEE
Confidence 111 146777776543 345556789999996544221100000000112333333223335777766544 445
Q ss_pred EEeCCCCEEEEecC
Q 015253 337 ALDSSGYVYTWGKG 350 (410)
Q Consensus 337 ~lt~~G~vy~wG~n 350 (410)
....+|.|..|-..
T Consensus 396 s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 396 SVSEDNIMQVWQMA 409 (430)
T ss_dssp EEETTSEEEEEEEC
T ss_pred EEECCCCEEEeEcc
Confidence 56778888998753
No 39
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=79.49 E-value=16 Score=32.71 Aligned_cols=17 Identities=6% Similarity=0.089 Sum_probs=12.4
Q ss_pred CeeEEEECCcEEEEeCC
Q 015253 121 YHTLLISNSSVFSCGSS 137 (410)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (410)
.|++++.+++||++|-.
T Consensus 63 ~~~~~~~~~~lyv~GG~ 79 (308)
T 1zgk_A 63 GLAGCVVGGLLYAVGGR 79 (308)
T ss_dssp SCEEEEETTEEEEECCE
T ss_pred cceEEEECCEEEEECCC
Confidence 45555578999999853
No 40
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=79.24 E-value=33 Score=30.23 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=12.7
Q ss_pred CeeEEEECCcEEEEeCC
Q 015253 121 YHTLLISNSSVFSCGSS 137 (410)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (410)
.|++++.+++||++|-.
T Consensus 55 ~~~~~~~~~~l~v~GG~ 71 (301)
T 2vpj_A 55 YVASVSLHDRIYVIGGY 71 (301)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred cccEEEECCEEEEEcCC
Confidence 45655578899999964
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=78.87 E-value=38 Score=30.81 Aligned_cols=235 Identities=9% Similarity=-0.045 Sum_probs=107.8
Q ss_pred CCCceEEEecCCeeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCC--eeEEEEcCCcEE
Q 015253 110 SAGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN--HAAFVLQSGQVF 185 (410)
Q Consensus 110 ~~~i~~ia~G~~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--h~~~lt~~G~vy 185 (410)
...|..++--....++. .||.|..|--.....+. ............|..|+...+ ..+.-..+|.|.
T Consensus 94 ~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~---------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~ 164 (357)
T 4g56_B 94 EAGVTDVAWVSEKGILVASDSGAVELWEILEKESLL---------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVK 164 (357)
T ss_dssp SSCEEEEEEETTTEEEEEETTSCEEEC--------C---------CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred CCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeE---------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 34566766444444444 78888888422110000 000011111225777766543 344446789999
Q ss_pred EEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec---CCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceee
Q 015253 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (410)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v 262 (410)
.|-.+.. + ....+.. ....|..|+.. ....+.-..||.|..|=.... + ....+
T Consensus 165 iwd~~~~-~-----------~~~~~~~-h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~-~----------~~~~~ 220 (357)
T 4g56_B 165 VWDLSQK-A-----------VLKSYNA-HSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP-K----------PATRI 220 (357)
T ss_dssp EEETTTT-E-----------EEEEECC-CSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSS-S----------CBCBC
T ss_pred EEECCCC-c-----------EEEEEcC-CCCCEEEEEEccCCCceeeeeccCCceEEEECCCC-c----------eeeee
Confidence 9954431 0 0011111 12345666553 233455677899999832111 0 00111
Q ss_pred cCCCCCCCEEEEEeCC--CeEE-EEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecC---CeEE
Q 015253 263 APLEEVGSVVQIAAGP--SYML-AVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVV 336 (410)
Q Consensus 263 ~~~~~~~~i~~ia~G~--~h~~-~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~---~hs~ 336 (410)
........+..|+... .+.+ .-..++.|+.|-.... ..+..+......|..|+... ...+
T Consensus 221 ~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~--------------~~~~~~~~~~~~v~~l~~sp~~~~~la 286 (357)
T 4g56_B 221 DFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP--------------DSAQTSAVHSQNITGLAYSYHSSPFLA 286 (357)
T ss_dssp CCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG--------------GGCEEECCCSSCEEEEEECSSSSCCEE
T ss_pred eeccccccccchhhhhcccceEEEeecccceeEEECCCC--------------cEeEEEeccceeEEEEEEcCCCCCEEE
Confidence 1111113567776542 2333 3467889999854221 11111211233577776543 2333
Q ss_pred EEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCC-CCceeeeeeEEec--CCcEE-EEEcCCCEEEeeeCCCC
Q 015253 337 ALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK-SHLAVQGLSVLAE--VCPTI-VQEDTRSCSDIICHDST 408 (410)
Q Consensus 337 ~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~-~~~i~~~~~i~~G--~~~t~-~l~~~g~v~~wG~~~~g 408 (410)
.-..||.|+.|=... ++ .+..+. ...|.. |+.- +...+ .-..||.|+.|=-.+.+
T Consensus 287 sgs~D~~i~iwd~~~-~~-------------~~~~~~H~~~V~~---vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 287 SISEDCTVAVLDADF-SE-------------VFRDLSHRDFVTG---VAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEETTSCEEEECTTS-CE-------------EEEECCCSSCEEE---EEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEeCCCEEEEEECCC-Cc-------------EeEECCCCCCEEE---EEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 356789999995321 11 111111 223444 5543 12223 23578999999655443
No 42
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=78.73 E-value=62 Score=33.11 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=83.5
Q ss_pred CEEEEEec----CCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec----CCeEEEEEcCC
Q 015253 164 HVVQVSAS----ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG----LNFTGFLTIRG 235 (410)
Q Consensus 164 ~i~~i~~G----~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G----~~~s~~lt~~G 235 (410)
.|..++.. ....+.-..||.|+.|-.... ...+..........|..++.. ....+.-+.+|
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 67777764 345556678999999964331 001111111123346666654 33556667889
Q ss_pred cEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC---------------CeEEEEECCCcEEEEeCCCCcc
Q 015253 236 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---------------SYMLAVTGNGVVYSFGSGSNFC 300 (410)
Q Consensus 236 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~---------------~h~~~lt~~G~vy~wG~n~~gq 300 (410)
.|..|-..... ...+..+.... ..|..++... ...+.-..+|.|+.|-....
T Consensus 124 ~I~vwdl~~~~---------~~~~~~~~~~~--~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~-- 190 (753)
T 3jro_A 124 KVSVVEFKENG---------TTSPIIIDAHA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD-- 190 (753)
T ss_dssp EEEEEECCSSS---------CCCCEEEECCS--SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT--
T ss_pred cEEEEEeecCC---------CcceeEeecCC--CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC--
Confidence 99999543211 11112222221 3566666543 45566678899999954321
Q ss_pred cCCCCCCCccccEEeeccccCCccEEEEEecCC-----eEEEEeCCCCEEEEecCC
Q 015253 301 LGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-----HVVALDSSGYVYTWGKGY 351 (410)
Q Consensus 301 LG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~-----hs~~lt~~G~vy~wG~n~ 351 (410)
......+..+......|..++.... ..+.-..+|.|..|-...
T Consensus 191 --------~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 191 --------AQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp --------TTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred --------cccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 0111122222223336777776644 344456789999997543
No 43
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=78.64 E-value=37 Score=30.44 Aligned_cols=194 Identities=12% Similarity=0.071 Sum_probs=99.8
Q ss_pred CceEEEecCCe-eEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeec-CC-CCCCEEEEEec----CCeeEEEEcCC
Q 015253 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRIN-FP-SAAHVVQVSAS----ENHAAFVLQSG 182 (410)
Q Consensus 112 ~i~~ia~G~~h-~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~-~~-~~~~i~~i~~G----~~h~~~lt~~G 182 (410)
.|..++-.... .++. .||.|+.|=.... ....+. +. ....|..++.. ....+.-..||
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~-------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg 79 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGE-------------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG 79 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETT-------------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCC-------------cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence 35566554332 2333 6888999854210 111111 11 22367777764 34556667899
Q ss_pred cEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecC----CeEEEEEcCCcEEEeecCCCCccCCCCCCCCCC
Q 015253 183 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL----NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPT 258 (410)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~----~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~ 258 (410)
.|..|-.... ...+..........|..++... ...+..+.+|.|..|-..... ...
T Consensus 80 ~v~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~---------~~~ 139 (379)
T 3jrp_A 80 KVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG---------TTS 139 (379)
T ss_dssp CEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS---------CCC
T ss_pred EEEEEEcCCC-----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC---------cee
Confidence 9999964331 0011111111233466666543 345566788999998543211 111
Q ss_pred ceeecCCCCCCCEEEEEeC---------------CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCc
Q 015253 259 PKSIAPLEEVGSVVQIAAG---------------PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGI 323 (410)
Q Consensus 259 p~~v~~~~~~~~i~~ia~G---------------~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~ 323 (410)
+..+.... ..|..++.. ....++-..+|.|+.|-.... ......+..+.....
T Consensus 140 ~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~h~~ 207 (379)
T 3jrp_A 140 PIIIDAHA--IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD----------AQTYVLESTLEGHSD 207 (379)
T ss_dssp EEEEECCT--TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETT----------TTEEEEEEEECCCSS
T ss_pred eEEecCCC--CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCC----------CcceeeEEEEecccC
Confidence 12222211 356666654 345666678999999954221 111112222222233
Q ss_pred cEEEEEecCC-----eEEEEeCCCCEEEEecC
Q 015253 324 HVVRVSAGDE-----HVVALDSSGYVYTWGKG 350 (410)
Q Consensus 324 ~i~~i~~G~~-----hs~~lt~~G~vy~wG~n 350 (410)
.|..++.... ..+....+|.|..|-..
T Consensus 208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp CEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 5777776643 44455678999999754
No 44
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=76.19 E-value=42 Score=29.82 Aligned_cols=190 Identities=8% Similarity=-0.067 Sum_probs=101.3
Q ss_pred CceEEEecCC----eeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC--CeeEEEEcCCc
Q 015253 112 GNMQITTGRY----HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQ 183 (410)
Q Consensus 112 ~i~~ia~G~~----h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~h~~~lt~~G~ 183 (410)
.|..|+-... ..++. .||.|..|-....++. ....+. .....|..++... ...+.-..||.
T Consensus 41 ~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~----------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT----------IPKAQQ-MHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE----------EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce----------eEEEec-cccCCEEEEEECcCCCEEEEEcCCCc
Confidence 4777877665 45555 7899999975432210 001111 1223577776643 34555678999
Q ss_pred EEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEe--cCC--eEEEEEcCCcEEEeecCCCCccCCCCCCCCCCc
Q 015253 184 VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLN--FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTP 259 (410)
Q Consensus 184 vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~--~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p 259 (410)
|..|-....- +..... ....|..++. ... ..+.-..+|.|+.|-.... ...
T Consensus 110 v~iwd~~~~~-------------~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~~ 164 (368)
T 3mmy_A 110 AKMWDLSSNQ-------------AIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-----------NPM 164 (368)
T ss_dssp EEEEETTTTE-------------EEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-----------SCS
T ss_pred EEEEEcCCCC-------------ceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-----------cEE
Confidence 9999654311 111111 2234666664 332 2344467899999943211 111
Q ss_pred eeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCe----E
Q 015253 260 KSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEH----V 335 (410)
Q Consensus 260 ~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~h----s 335 (410)
..+... ..+..+..-....++.+.++.++.|-...... ....+.........+..+...... .
T Consensus 165 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (368)
T 3mmy_A 165 MVLQLP---ERCYCADVIYPMAVVATAERGLIVYQLENQPS----------EFRRIESPLKHQHRCVAIFKDKQNKPTGF 231 (368)
T ss_dssp EEEECS---SCEEEEEEETTEEEEEEGGGCEEEEECSSSCE----------EEEECCCSCSSCEEEEEEEECTTSCEEEE
T ss_pred EEEecC---CCceEEEecCCeeEEEeCCCcEEEEEeccccc----------hhhhccccccCCCceEEEcccCCCCCCeE
Confidence 112211 35666776677888888999999996543211 111111111122234444444433 5
Q ss_pred EEEeCCCCEEEEecC
Q 015253 336 VALDSSGYVYTWGKG 350 (410)
Q Consensus 336 ~~lt~~G~vy~wG~n 350 (410)
++-..+|.+..|-..
T Consensus 232 ~~~~~dg~i~i~~~~ 246 (368)
T 3mmy_A 232 ALGSIEGRVAIHYIN 246 (368)
T ss_dssp EEEETTSEEEEEESS
T ss_pred EEecCCCcEEEEecC
Confidence 666889999999754
No 45
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=76.12 E-value=91 Score=33.70 Aligned_cols=194 Identities=9% Similarity=0.010 Sum_probs=89.2
Q ss_pred CEEEEEecC-CeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEe--cCCeEEEEEcCCcEEEe
Q 015253 164 HVVQVSASE-NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTC 240 (410)
Q Consensus 164 ~i~~i~~G~-~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~s~~lt~~G~v~~w 240 (410)
.|..++... ...+....+|.|+.|-.... ++ ...+.. ....|..++. .....+.-+.+|.|+.|
T Consensus 1046 ~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~-----------~~~~~~-~~~~v~~~~~s~d~~~l~s~s~d~~v~iw 1112 (1249)
T 3sfz_A 1046 TVKDFRLLQDSRLLSWSFDGTVKVWNVITG-RI-----------ERDFTC-HQGTVLSCAISSDATKFSSTSADKTAKIW 1112 (1249)
T ss_dssp CEEEEEECSSSEEEEEESSSEEEEEETTTT-CC-----------CEEEEC-CSSCCCCEEECSSSSSCEEECCSSCCCEE
T ss_pred cEEEEEEcCCCcEEEEECCCcEEEEECCCC-ce-----------eEEEcc-cCCcEEEEEECCCCCEEEEEcCCCcEEEE
Confidence 566665543 44556678899999975431 10 011111 0112232322 22334445567788777
Q ss_pred ecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCC--eEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEee-c
Q 015253 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ-T 317 (410)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~--h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~-~ 317 (410)
-...... ...+... ...|..++...+ ..+.-..+|.|+.|-......+. ...|.... .
T Consensus 1113 d~~~~~~-----------~~~l~~h--~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~------~~~~~~~~~~ 1173 (1249)
T 3sfz_A 1113 SFDLLSP-----------LHELKGH--NGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH------SCAPISVEEG 1173 (1249)
T ss_dssp CSSSSSC-----------SBCCCCC--SSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCC------CCCCCC----
T ss_pred ECCCcce-----------eeeeccC--CCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE------Eecccccccc
Confidence 4322110 0111111 135666666443 44455678889998654322111 11111111 0
Q ss_pred cccCCccEEEEEecCCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecC-CCCCceeeeeeEEecCCcEEEEEcC
Q 015253 318 FRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSS-LKSHLAVQGLSVLAEVCPTIVQEDT 396 (410)
Q Consensus 318 ~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~-~~~~~i~~~~~i~~G~~~t~~l~~~ 396 (410)
.......|..++...+...+++.+|.|..|-......+.. +.. ......+. ++..+...++...+
T Consensus 1174 ~~~~~~~v~~l~fs~dg~~l~s~~g~v~vwd~~~g~~~~~-----------~~~~~~~i~~~~---~s~dg~~l~~~~~d 1239 (1249)
T 3sfz_A 1174 TATHGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQT-----------FYTNGTNLKKIH---VSPDFRTYVTVDNL 1239 (1249)
T ss_dssp ---CCSCCCEEEECTTSSCEEEESSSEEEBCSSSCBCCCC-----------CCCSSCCCCCCE---ECSSSCCEEEECTT
T ss_pred ccccCceEEEEEECCCCCEEEECCCeEEEEECCCCceeee-----------eeccCCcccEEE---ECCCCCEEEEecCC
Confidence 1112224666666555545555568888886433111110 000 01111222 44444556667788
Q ss_pred CCEEEee
Q 015253 397 RSCSDII 403 (410)
Q Consensus 397 g~v~~wG 403 (410)
|.++.|-
T Consensus 1240 g~v~vw~ 1246 (1249)
T 3sfz_A 1240 GILYILQ 1246 (1249)
T ss_dssp CCEEEEC
T ss_pred cEEEEEe
Confidence 9999884
No 46
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=76.08 E-value=42 Score=29.80 Aligned_cols=206 Identities=14% Similarity=0.047 Sum_probs=110.9
Q ss_pred CEEEEEec--CCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec---CCeEEEEEcCCcEE
Q 015253 164 HVVQVSAS--ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVH 238 (410)
Q Consensus 164 ~i~~i~~G--~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~s~~lt~~G~v~ 238 (410)
.+..+... ..+.+++|++|++|.---...-. . . ... + ..++.+|+.+-+- ....+++|++|.+.
T Consensus 25 ~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~-----~-~-~~~---l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iK 93 (276)
T 3no0_A 25 PVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQ-----G-S-KVS---L-KSREEKIVGAFIREKFGNRLLLATKKGYVK 93 (276)
T ss_dssp CEEEEEEEETTSCEEEEETTSEEEEECSHHHHT-----S-E-ECC---C-SSTTCCEEEEEEGGGSCSEEEEEETTSEEE
T ss_pred eEEEEEEECCCCEEEEEcCCCeEEEEEhhhCcc-----C-c-ccc---c-CCCCCEEEEEECCcCCCCEEEEEeCCCEEE
Confidence 45544443 45578899999999764222100 0 0 000 2 2246678887662 24678899999988
Q ss_pred EeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEe--CCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEee
Q 015253 239 TCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 316 (410)
Q Consensus 239 ~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~--G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~ 316 (410)
-.-..++-+ .......-.+.+.+.++.+.. +..+.+++|++|++|.+-..+.-.+|.+..- ++.-
T Consensus 94 r~~l~~~~~--------~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G-----v~~i 160 (276)
T 3no0_A 94 KIPLAEFEY--------KAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG-----VQGI 160 (276)
T ss_dssp EEEGGGTTT--------CSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECC
T ss_pred EEEHHHhhh--------hcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC-----EEEE
Confidence 775444321 011122222333356666544 4456899999999999876554444432211 1111
Q ss_pred ccccCCccEEEEEec--CCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEE
Q 015253 317 TFRRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQE 394 (410)
Q Consensus 317 ~~~~~~~~i~~i~~G--~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~ 394 (410)
.+. .+.+|+.+... ..+.+++|++|.+.-.-..++-..+.+...... + .++..++.+. +..+....++++
T Consensus 161 ~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~----i--~~~~~lv~~~-~~~~~~~i~~~t 232 (276)
T 3no0_A 161 KLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEV----S--GTKDTLVDLI-PIKEEVELLITT 232 (276)
T ss_dssp CCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEEC----C--CSSSCEEEEE-EESSEEEEEEEE
T ss_pred ccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEE----E--cCCCcEEEEE-EeCCCCEEEEEc
Confidence 222 33467666544 346777899998887764443322222111110 1 1222344311 223456778889
Q ss_pred cCCCEEE
Q 015253 395 DTRSCSD 401 (410)
Q Consensus 395 ~~g~v~~ 401 (410)
++|.+..
T Consensus 233 ~~G~~ir 239 (276)
T 3no0_A 233 KNGKAFY 239 (276)
T ss_dssp TTSCEEE
T ss_pred CCCeEEE
Confidence 9998877
No 47
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=75.69 E-value=46 Score=31.30 Aligned_cols=98 Identities=7% Similarity=0.072 Sum_probs=59.3
Q ss_pred eEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCC
Q 015253 218 CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 297 (410)
Q Consensus 218 i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~ 297 (410)
|.+++. ....+++.++|.|..|=-.... ....+..+. ..+.++.+-....++++++|.|+.|=...
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~-----------~~~~~~~~~--~~v~~i~~~~p~~av~~~dG~L~v~dl~~ 155 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELS-----------EFRTVTSFE--KPVFQLKNVNNTLVILNSVNDLSALDLRT 155 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTT-----------CEEEEEECS--SCEEEEEECSSEEEEEETTSEEEEEETTT
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhh-----------ccCccceee--cceeeEEecCCCEEEEECCCCEEEEEccC
Confidence 889999 7777888888999998433221 111122222 24667777666688889999999995432
Q ss_pred CcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEE
Q 015253 298 NFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTW 347 (410)
Q Consensus 298 ~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~w 347 (410)
. ++ . .+. ..|..|+-...-.++...+|.+..|
T Consensus 156 ~-~~---------~--~~~------~~Vs~v~WSpkG~~vg~~dg~i~~~ 187 (388)
T 1xip_A 156 K-ST---------K--QLA------QNVTSFDVTNSQLAVLLKDRSFQSF 187 (388)
T ss_dssp C-CE---------E--EEE------ESEEEEEECSSEEEEEETTSCEEEE
T ss_pred C-cc---------c--ccc------CCceEEEEcCCceEEEEcCCcEEEE
Confidence 1 11 1 111 1466666555555555666666665
No 48
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=75.49 E-value=42 Score=29.50 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=12.4
Q ss_pred CCeEEEEECCCcEEEEeC
Q 015253 278 PSYMLAVTGNGVVYSFGS 295 (410)
Q Consensus 278 ~~h~~~lt~~G~vy~wG~ 295 (410)
..|++++. ++++|.+|-
T Consensus 151 ~~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 151 EGAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp BSCEEEEE-TTEEEEECC
T ss_pred ccceEEEE-CCEEEEECC
Confidence 35666655 789999985
No 49
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=75.09 E-value=1.1 Score=41.04 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.3
Q ss_pred cccccCChhHHHHHHHhCCCChhhhhcccccccccCCC
Q 015253 8 FSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGS 45 (410)
Q Consensus 8 ~~~~~lp~~i~~~~~~~~~l~~~dl~~l~~t~~~f~~~ 45 (410)
..+.+||+||+.+|| .+|+..|+.....+|+.+...
T Consensus 7 ~~~~~LP~eil~~If--~~L~~~d~~~~~~vc~~W~~~ 42 (336)
T 2ast_B 7 VSWDSLPDELLLGIF--SCLCLPELLKVSGVCKRWYRL 42 (336)
T ss_dssp CCSSSSCHHHHHHHH--TTSCHHHHHHTTSSCHHHHHH
T ss_pred CChhhCCHHHHHHHH--HhCCHHHHHHHHHHHHHHHHH
Confidence 367899999999999 999999999999999987765
No 50
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=74.90 E-value=45 Score=29.59 Aligned_cols=211 Identities=11% Similarity=0.043 Sum_probs=113.2
Q ss_pred ceEEEecC--CeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec---CCeeEEEEcCCcEEE
Q 015253 113 NMQITTGR--YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQSGQVFT 186 (410)
Q Consensus 113 i~~ia~G~--~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~h~~~lt~~G~vy~ 186 (410)
+..+.... .+.+++ ++|++|.---.. +-.. . . .-+ +....+|+.+.+- ....+++|++|.+.-
T Consensus 26 ~~~~~~~~t~~~ll~fT~~G~v~~~~~~~---lp~~---~-~---~~l-l~~~e~i~~v~~~~~~~~~~v~~T~~G~iKr 94 (276)
T 3no0_A 26 VVNILRVPFTEGLFLVSNRGRVYWIAGSQ---ALQG---S-K---VSL-KSREEKIVGAFIREKFGNRLLLATKKGYVKK 94 (276)
T ss_dssp EEEEEEEETTSCEEEEETTSEEEEECSHH---HHTS---E-E---CCC-SSTTCCEEEEEEGGGSCSEEEEEETTSEEEE
T ss_pred EEEEEEECCCCEEEEEcCCCeEEEEEhhh---CccC---c-c---ccc-CCCCCEEEEEECCcCCCCEEEEEeCCCEEEE
Confidence 44444433 335566 999999764321 1000 0 0 014 5556688888762 246788999999987
Q ss_pred EeCCCCCcccCCCCCCceeccEEecccCCCceEEEEe--cCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecC
Q 015253 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (410)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~ 264 (410)
.-...+-+-- .-...+..-++..++.+.. +..+.+++|++|++|.+-..+.-.+|....- ++.-.
T Consensus 95 ~~l~~~~~~~--------~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~G-----v~~i~ 161 (276)
T 3no0_A 95 IPLAEFEYKA--------QGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARG-----VQGIK 161 (276)
T ss_dssp EEGGGTTTCS--------TTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECCC
T ss_pred EEHHHhhhhc--------CCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCC-----EEEEc
Confidence 7654442100 0011111112334444333 4556888999999999866554443332111 11223
Q ss_pred CCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEE--ecCCeEEEEeC
Q 015253 265 LEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS--AGDEHVVALDS 340 (410)
Q Consensus 265 ~~~~~~i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~--~G~~hs~~lt~ 340 (410)
+.+.++|+.+... ..+.+++|++|.+.-.-..++-..+.+... .. .+. .+..++.+. .+....+++|+
T Consensus 162 L~~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkG-----v~--~i~-~~~~lv~~~~~~~~~~i~~~t~ 233 (276)
T 3no0_A 162 LEKNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKG-----TE--VSG-TKDTLVDLIPIKEEVELLITTK 233 (276)
T ss_dssp CCTTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCC-----EE--CCC-SSSCEEEEEEESSEEEEEEEET
T ss_pred cCCCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcc-----eE--EEc-CCCcEEEEEEeCCCCEEEEEcC
Confidence 3334678776554 346888899998877665544332222110 00 011 222344432 34567888999
Q ss_pred CCCEEE--EecCCCCCC
Q 015253 341 SGYVYT--WGKGYCGAL 355 (410)
Q Consensus 341 ~G~vy~--wG~n~~gqL 355 (410)
+|++.- +-.+.--.+
T Consensus 234 ~G~~ir~~~~~~~i~~~ 250 (276)
T 3no0_A 234 NGKAFYDKINQKDIPLS 250 (276)
T ss_dssp TSCEEEEEEEGGGSCBC
T ss_pred CCeEEEeeeCHHHCCCc
Confidence 999988 755443333
No 51
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=74.73 E-value=55 Score=30.53 Aligned_cols=211 Identities=7% Similarity=0.008 Sum_probs=101.9
Q ss_pred ecCCCceEEEecCC--eeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec---CCeeEEEEc
Q 015253 108 ETSAGNMQITTGRY--HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQ 180 (410)
Q Consensus 108 ~~~~~i~~ia~G~~--h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~h~~~lt~ 180 (410)
.....|..++.-.. ..++. .+|.|+.|-.......-..... ......+. .....|..++.. ....+.-..
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~--~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGE--CQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCC--CCCSEEEE-CCSSCCCCEEECTTSTTEEEEECT
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCcccc--CCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeC
Confidence 33445777776653 34444 7899999976532111000000 00011111 111234444433 224555567
Q ss_pred CCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec---CCeEEEEEcCCcEEEeecCCCCccCCCCCCCCC
Q 015253 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRP 257 (410)
Q Consensus 181 ~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~ 257 (410)
+|.|..|-.+...... ....+..........|..|+.. ....+....+|.|+.|-..... ..
T Consensus 203 dg~i~vwd~~~~~~~~------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~---------~~ 267 (430)
T 2xyi_A 203 DHTICLWDINATPKEH------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNN---------TS 267 (430)
T ss_dssp TSCEEEEETTSCCBGG------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSC---------SS
T ss_pred CCeEEEEeCCCCCCCC------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCC---------CC
Confidence 8999999876522111 1111111111122346666653 3344455679999999544221 01
Q ss_pred Cce-eecCCCCCCCEEEEEeCCC---eEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCC
Q 015253 258 TPK-SIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE 333 (410)
Q Consensus 258 ~p~-~v~~~~~~~~i~~ia~G~~---h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~ 333 (410)
.+. .+.... ..|..|+.... ..+.-..+|.|..|-.....+ |.. .+......|..|+....
T Consensus 268 ~~~~~~~~~~--~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-----------~~~--~~~~h~~~v~~i~~sp~ 332 (430)
T 2xyi_A 268 KPSHTVDAHT--AEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-----------KLH--SFESHKDEIFQVQWSPH 332 (430)
T ss_dssp SCSEEEECCS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-----------CSE--EEECCSSCEEEEEECSS
T ss_pred cceeEeecCC--CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-----------CeE--EeecCCCCEEEEEECCC
Confidence 111 121111 45777766432 244456788999997543211 111 11112235777766543
Q ss_pred e---EEEEeCCCCEEEEecCC
Q 015253 334 H---VVALDSSGYVYTWGKGY 351 (410)
Q Consensus 334 h---s~~lt~~G~vy~wG~n~ 351 (410)
. .+.-..+|.|..|-...
T Consensus 333 ~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 333 NETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp CTTEEEEEETTSCCEEEEGGG
T ss_pred CCCEEEEEeCCCcEEEEeCCC
Confidence 3 44456789999997544
No 52
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=73.32 E-value=53 Score=29.68 Aligned_cols=155 Identities=10% Similarity=0.019 Sum_probs=80.7
Q ss_pred CCEEEEEecC---CeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEE--e--c--ccCCCceEEEEe---cCCeEEE
Q 015253 163 AHVVQVSASE---NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRL--V--E--ALKGVPCKQVTA---GLNFTGF 230 (410)
Q Consensus 163 ~~i~~i~~G~---~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~--v--~--~~~~~~i~~i~~---G~~~s~~ 230 (410)
..|..++... ...+.-+.+|.|..|-........ ....... . . ......|..++. +....+.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s 117 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS------YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTS 117 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS------CEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc------eEeccccccccccccccCCCcEEEEEEccCCCcEEEE
Confidence 3677777654 344455679999999765422111 0110000 0 0 012335666665 3345566
Q ss_pred EEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCC-----eEEEEECCCcEEEEeCCCCcccCCCC
Q 015253 231 LTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS-----YMLAVTGNGVVYSFGSGSNFCLGHGE 305 (410)
Q Consensus 231 lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~-----h~~~lt~~G~vy~wG~n~~gqLG~g~ 305 (410)
-..+|.|..|-.... .+....... ..+..+..... ..++-..+|.|+.|-.....
T Consensus 118 ~~~d~~i~iwd~~~~------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~------ 177 (408)
T 4a11_B 118 SSFDKTLKVWDTNTL------------QTADVFNFE--ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS------ 177 (408)
T ss_dssp EETTSEEEEEETTTT------------EEEEEEECS--SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC------
T ss_pred EeCCCeEEEeeCCCC------------ccceeccCC--CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc------
Confidence 677999999953321 111111111 34555554432 45666788999999653311
Q ss_pred CCCccccEEeeccccCCccEEEEEecCCe---EEEEeCCCCEEEEecCC
Q 015253 306 QHDELQPRAIQTFRRKGIHVVRVSAGDEH---VVALDSSGYVYTWGKGY 351 (410)
Q Consensus 306 ~~~~~~p~~i~~~~~~~~~i~~i~~G~~h---s~~lt~~G~vy~wG~n~ 351 (410)
....+. .....|..++..... .+.-..+|.|+.|-...
T Consensus 178 -----~~~~~~---~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~ 218 (408)
T 4a11_B 178 -----CSHILQ---GHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218 (408)
T ss_dssp -----CCEEEC---CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTC
T ss_pred -----eeeeec---CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCC
Confidence 111121 122356666655432 44567889999997543
No 53
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=72.91 E-value=85 Score=31.86 Aligned_cols=149 Identities=9% Similarity=-0.068 Sum_probs=74.4
Q ss_pred CceEEEecCCe-eEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC---CeeEEEEcCCcEE
Q 015253 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---NHAAFVLQSGQVF 185 (410)
Q Consensus 112 ~i~~ia~G~~h-~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~---~h~~~lt~~G~vy 185 (410)
.|..++-.... .++. .||.|..|-..... ............|..++... ...+.-..+|.|.
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~ 166 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW------------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTS------------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc------------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence 46666654333 2333 77888888643110 11111111223577776643 3455557889999
Q ss_pred EEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEe----cCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCcee
Q 015253 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA----GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 261 (410)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~----G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~ 261 (410)
.|-..... ....+.......+..++. .....+.-..+|.|..|-.... .....
T Consensus 167 vwd~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-----------~~~~~ 223 (814)
T 3mkq_A 167 VWSLGQST------------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-----------SCVAT 223 (814)
T ss_dssp EEETTCSS------------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-----------EEEEE
T ss_pred EEECCCCc------------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------cEEEE
Confidence 99653311 011111111122333333 3344555567889999943211 11112
Q ss_pred ecCCCCCCCEEEEEeCCC--eEEEEECCCcEEEEeCCC
Q 015253 262 IAPLEEVGSVVQIAAGPS--YMLAVTGNGVVYSFGSGS 297 (410)
Q Consensus 262 v~~~~~~~~i~~ia~G~~--h~~~lt~~G~vy~wG~n~ 297 (410)
+.... ..|..++...+ ..+....+|.|+.|-...
T Consensus 224 ~~~~~--~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 224 LEGHM--SNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EECCS--SCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EcCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 22211 35766665543 455566789999996543
No 54
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=72.81 E-value=57 Score=29.84 Aligned_cols=141 Identities=10% Similarity=0.030 Sum_probs=70.6
Q ss_pred EEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEE---ecCCeeEEEEcCCcEEEEeCC
Q 015253 115 QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVS---ASENHAAFVLQSGQVFTCGDN 190 (410)
Q Consensus 115 ~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~---~G~~h~~~lt~~G~vy~wG~n 190 (410)
.++.-..+.+.- .||.++.|-....- .........+..+. ......+.-..+|.|..|-..
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 127 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRD---------------GSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSN 127 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEE---------------TTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTT
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccc---------------eeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCC
Confidence 344444445555 89999999643211 11111111233332 233444555678999999543
Q ss_pred CCCcccCCCCCCceeccEEecccCCCceEEEEecC--CeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCC
Q 015253 191 SSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEV 268 (410)
Q Consensus 191 ~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~ 268 (410)
. + .+..........|..++... ...+.-..+|.|+.|-.... .....+....
T Consensus 128 ~-~------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~-----------~~~~~~~~h~-- 181 (420)
T 3vl1_A 128 F-N------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG-----------SNPRTLIGHR-- 181 (420)
T ss_dssp S-C------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----------CCCEEEECCS--
T ss_pred C-c------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC-----------cCceEEcCCC--
Confidence 2 1 11111111223456665543 34455567899999954321 1122222221
Q ss_pred CCEEEEEeC--CCeEEEEECCCcEEEEeCC
Q 015253 269 GSVVQIAAG--PSYMLAVTGNGVVYSFGSG 296 (410)
Q Consensus 269 ~~i~~ia~G--~~h~~~lt~~G~vy~wG~n 296 (410)
..|..++.. ....+.-..+|.|..|-..
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 356666554 3455566778899999653
No 55
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=72.08 E-value=53 Score=29.12 Aligned_cols=199 Identities=9% Similarity=0.056 Sum_probs=94.5
Q ss_pred CceEEEecCCe-eEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec--CCeeEEEEcCCcEEE
Q 015253 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFT 186 (410)
Q Consensus 112 ~i~~ia~G~~h-~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~h~~~lt~~G~vy~ 186 (410)
.|..++..... .++. .||.|+.|-..... ....+. .....|..++.. ....+....||.|+.
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~------------~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE------------RLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCEEEEETTTCC------------EEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch------------hhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 46666654432 3333 78999999543210 111111 122357767654 345555678999999
Q ss_pred EeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec--CCeEEEEEcC-----CcEEEeecCCCCccCCCCCCCCCCc
Q 015253 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIR-----GHVHTCGSNTHGQLGHGDTLDRPTP 259 (410)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~s~~lt~~-----G~v~~wG~n~~gqlG~~~~~~~~~p 259 (410)
|-....-. .. .+. ....|..++.. ....++...+ |.|+.|-.........-........
T Consensus 101 wd~~~~~~---------~~---~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 101 WDVSNGQC---------VA---TWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EETTTCCE---------EE---EEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EECCCCcE---------EE---Eee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 96543110 11 111 12234444433 3334444555 7888885433221110000000111
Q ss_pred eeecCCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCC--eE
Q 015253 260 KSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE--HV 335 (410)
Q Consensus 260 ~~v~~~~~~~~i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~--hs 335 (410)
..+........+..++.. ....++-..+|.|+.|-.... ...+..+......|..++...+ ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~l 233 (369)
T 3zwl_B 167 HKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN-------------YEYVDSIDLHEKSISDMQFSPDLTYF 233 (369)
T ss_dssp EEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT-------------TEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred eeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC-------------cEeEEEEecCCCceeEEEECCCCCEE
Confidence 122222211245555544 335556678899999864321 1111222212335666665433 34
Q ss_pred EEEeCCCCEEEEecC
Q 015253 336 VALDSSGYVYTWGKG 350 (410)
Q Consensus 336 ~~lt~~G~vy~wG~n 350 (410)
++-..+|.|+.|-..
T Consensus 234 ~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 234 ITSSRDTNSFLVDVS 248 (369)
T ss_dssp EEEETTSEEEEEETT
T ss_pred EEecCCceEEEEECC
Confidence 445678899999653
No 56
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=71.94 E-value=53 Score=29.09 Aligned_cols=148 Identities=10% Similarity=-0.072 Sum_probs=82.6
Q ss_pred CCEEEEEecCC-----eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec--CCeEEEEEcCC
Q 015253 163 AHVVQVSASEN-----HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRG 235 (410)
Q Consensus 163 ~~i~~i~~G~~-----h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~s~~lt~~G 235 (410)
..|..|+.... ..+.-..||.|..|-....++ .....+.. ....|..++.. ....+.-+.+|
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----------~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----------TIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----------EEEEEEEE-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----------eeEEEecc-ccCCEEEEEECcCCCEEEEEcCCC
Confidence 37888887764 344446789999997654221 11111111 12345555553 33455567789
Q ss_pred cEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEe--CCC--eEEEEECCCcEEEEeCCCCcccCCCCCCCccc
Q 015253 236 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPS--YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQ 311 (410)
Q Consensus 236 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~--G~~--h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~ 311 (410)
.|..|-.... .+..+... ...|..++. ..+ +.+.-..+|.|+.|=.... ..
T Consensus 109 ~v~iwd~~~~------------~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----------~~ 163 (368)
T 3mmy_A 109 TAKMWDLSSN------------QAIQIAQH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS-----------NP 163 (368)
T ss_dssp EEEEEETTTT------------EEEEEEEC--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS-----------SC
T ss_pred cEEEEEcCCC------------Cceeeccc--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC-----------cE
Confidence 9999954321 11122221 246777775 333 3455567899999954321 11
Q ss_pred cEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecC
Q 015253 312 PRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 312 p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n 350 (410)
...+.. ...+..+..-....++.+.++.+..|-..
T Consensus 164 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 198 (368)
T 3mmy_A 164 MMVLQL----PERCYCADVIYPMAVVATAERGLIVYQLE 198 (368)
T ss_dssp SEEEEC----SSCEEEEEEETTEEEEEEGGGCEEEEECS
T ss_pred EEEEec----CCCceEEEecCCeeEEEeCCCcEEEEEec
Confidence 111221 11466666667778888899999999754
No 57
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=69.35 E-value=1e+02 Score=31.27 Aligned_cols=189 Identities=11% Similarity=-0.013 Sum_probs=91.5
Q ss_pred CceEEEecCCee-EEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec--CCeeEEEEcCCcEEE
Q 015253 112 GNMQITTGRYHT-LLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFT 186 (410)
Q Consensus 112 ~i~~ia~G~~h~-~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~h~~~lt~~G~vy~ 186 (410)
.|..++-..... ++. .+|.|..|-..... ....+.. ....|..++.. ....+.-+.+|.|+.
T Consensus 15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~------------~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV------------EVRSIQV-TETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTE------------EEEEEEC-CSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEECCCCc------------eEEEEec-CCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 455565544332 333 68899999643210 1111221 12245555443 345566678999999
Q ss_pred EeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCC--eEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecC
Q 015253 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLN--FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (410)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~--~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~ 264 (410)
|-.....++ ..+.. ....|..++.... +.+.-+.+|.|..|-..... .....+..
T Consensus 82 w~~~~~~~~------------~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~----------~~~~~~~~ 138 (814)
T 3mkq_A 82 FNYNTGEKV------------VDFEA-HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----------ALEQTFEG 138 (814)
T ss_dssp EETTTCCEE------------EEEEC-CSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS----------EEEEEEEC
T ss_pred EECCCCcEE------------EEEec-CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc----------eEEEEEcC
Confidence 975432110 11111 1223555554433 34445678888888432110 11111221
Q ss_pred CCCCCCEEEEEeCC---CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEe--cCCeEEEEe
Q 015253 265 LEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALD 339 (410)
Q Consensus 265 ~~~~~~i~~ia~G~---~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~--G~~hs~~lt 339 (410)
.. ..|..++... ...+....+|.|+.|-.... .....+.............+. .....++-.
T Consensus 139 ~~--~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 205 (814)
T 3mkq_A 139 HE--HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-----------TPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205 (814)
T ss_dssp CS--SCEEEEEEETTEEEEEEEEETTSEEEEEETTCS-----------SCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred CC--CcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------cceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence 11 4577777643 34555677899999964321 111122211112222333333 334455556
Q ss_pred CCCCEEEEec
Q 015253 340 SSGYVYTWGK 349 (410)
Q Consensus 340 ~~G~vy~wG~ 349 (410)
.+|.|..|-.
T Consensus 206 ~dg~i~~~d~ 215 (814)
T 3mkq_A 206 DDLTIKIWDY 215 (814)
T ss_dssp TTSEEEEEET
T ss_pred CCCEEEEEEC
Confidence 7889999964
No 58
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=69.23 E-value=59 Score=28.50 Aligned_cols=163 Identities=13% Similarity=0.103 Sum_probs=73.9
Q ss_pred CEEEEEec-CCeeEEEEcCCc-EEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCc-EEEe
Q 015253 164 HVVQVSAS-ENHAAFVLQSGQ-VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGH-VHTC 240 (410)
Q Consensus 164 ~i~~i~~G-~~h~~~lt~~G~-vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~-v~~w 240 (410)
++.-..++ ....++++.+|+ ++.++.... . . .....|..+....+..+.-...+.....+++.+|+ +|.+
T Consensus 89 ~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~----~--~-~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~~~w~~ 161 (276)
T 3no2_A 89 NALVAWCGHPSTILEVNMKGEVLSKTEFETG----I--E-RPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSV 161 (276)
T ss_dssp CEEEEEESTTEEEEEECTTSCEEEEEEECCS----C--S-SGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred CEEEEecCCCCEEEEEeCCCCEEEEEeccCC----C--C-cccccccCceECCCCCEEEEecCCCEEEEECCCCCEEEEE
Confidence 45544555 455566677777 456654221 0 0 00112222222233334433334455666776775 4555
Q ss_pred ecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECC-Cc-EEEEeCCCCcccCCCCCCCccccEEeecc
Q 015253 241 GSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGN-GV-VYSFGSGSNFCLGHGEQHDELQPRAIQTF 318 (410)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~-G~-vy~wG~n~~gqLG~g~~~~~~~p~~i~~~ 318 (410)
+.. ..|.-+..+.. .++.-........++++.+ |+ +|.++.+... ......|.-+...
T Consensus 162 ~~~-------------~~~~~~~~~~~-g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~~~~~~~~~ 221 (276)
T 3no2_A 162 KLS-------------GTPFSSAFLDN-GDCLVACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLFFVAQLFPL 221 (276)
T ss_dssp ECS-------------SCCCEEEECTT-SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCSEEEEEEEC
T ss_pred ECC-------------CCccceeEcCC-CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC------CccccccccceEc
Confidence 432 11222222322 3454333333446677766 64 5666543210 0012234444433
Q ss_pred ccCCccEEEEEe--c---------CCeEEEEeCCCCEEEEecCCCCCCCC
Q 015253 319 RRKGIHVVRVSA--G---------DEHVVALDSSGYVYTWGKGYCGALGH 357 (410)
Q Consensus 319 ~~~~~~i~~i~~--G---------~~hs~~lt~~G~vy~wG~n~~gqLG~ 357 (410)
... .+. |+. | ..+.+.++.+|++ .|=.+.....|.
T Consensus 222 ~~G--~i~-v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~~~~~~~ 267 (276)
T 3no2_A 222 QNG--GLY-ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLNDKVKFGM 267 (276)
T ss_dssp TTS--CEE-EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECCTTTSCC
T ss_pred CCC--CEE-EEeccCccccccccCCceEEEECCCCCE-EEEecCcccccc
Confidence 322 232 333 2 3357888888876 666555555544
No 59
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=68.93 E-value=21 Score=36.06 Aligned_cols=57 Identities=19% Similarity=0.198 Sum_probs=33.1
Q ss_pred CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEE----ecCCeEEEEeCCCCEEEEec
Q 015253 279 SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS----AGDEHVVALDSSGYVYTWGK 349 (410)
Q Consensus 279 ~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~----~G~~hs~~lt~~G~vy~wG~ 349 (410)
.+++++..+|++|.+|-.... . +..++........+. .-..|++++..+|+||++|-
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~------~--------v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAK------K--------TSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTT------C--------EEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred cccccCCCCCCEEEeCCCCCC------c--------eEEecCcCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 445777789999999964321 0 111111111222221 22568888877999999995
No 60
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=66.85 E-value=67 Score=28.24 Aligned_cols=201 Identities=8% Similarity=-0.083 Sum_probs=101.3
Q ss_pred CceEEEecCC--eeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec--CC-eeEEEEcCCcEE
Q 015253 112 GNMQITTGRY--HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--EN-HAAFVLQSGQVF 185 (410)
Q Consensus 112 ~i~~ia~G~~--h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~-h~~~lt~~G~vy 185 (410)
.|..++-... ..++- .||.|+.|-..... . ...+..+ ......|..++.. .. ..+.-..+|.|+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~-~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------K-NVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------T-EEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------c-cccceee-eecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 3555554322 23333 78999998643211 0 0011111 1222356666554 34 556667899999
Q ss_pred EEeC-CCCCcccCCCCCCceeccEEeccc-CCCceEEEEec-CCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceee
Q 015253 186 TCGD-NSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVTAG-LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (410)
Q Consensus 186 ~wG~-n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~i~~G-~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v 262 (410)
.|-. .. +++ ..+... ....|..++.. ....+....+|.|..|-...... .. .......+
T Consensus 83 ~wd~~~~-~~~------------~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~---~~--~~~~~~~~ 144 (342)
T 1yfq_A 83 KVDLIGS-PSF------------QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD---GV--IAVKNLNS 144 (342)
T ss_dssp EECSSSS-SSE------------EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT---BC--EEEEESCS
T ss_pred EEEeccC-Cce------------EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc---cc--ccccCCee
Confidence 9965 32 211 112110 12245555443 45556667889999994321000 00 00000011
Q ss_pred cCCCCCCCEEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecC---CeEEEEe
Q 015253 263 APLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD---EHVVALD 339 (410)
Q Consensus 263 ~~~~~~~~i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~---~hs~~lt 339 (410)
..+.....|..++...+..++.+.+|.|+.|-....+. ......... ....|..|+... ...++-.
T Consensus 145 ~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~~--~~~~i~~i~~~~~~~~~l~~~~ 213 (342)
T 1yfq_A 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEESG--LKYQIRDVALLPKEQEGYACSS 213 (342)
T ss_dssp SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEECS--CSSCEEEEEECSGGGCEEEEEE
T ss_pred eEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeecC--CCCceeEEEECCCCCCEEEEEe
Confidence 11112257888888888877778899999997543110 011111111 122466666543 4555567
Q ss_pred CCCCEEEEecCC
Q 015253 340 SSGYVYTWGKGY 351 (410)
Q Consensus 340 ~~G~vy~wG~n~ 351 (410)
.+|.+..|-...
T Consensus 214 ~dg~i~i~~~~~ 225 (342)
T 1yfq_A 214 IDGRVAVEFFDD 225 (342)
T ss_dssp TTSEEEEEECCT
T ss_pred cCCcEEEEEEcC
Confidence 889999987654
No 61
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=66.10 E-value=53 Score=28.94 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=12.4
Q ss_pred CeeEEEECCcEEEEeCC
Q 015253 121 YHTLLISNSSVFSCGSS 137 (410)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (410)
.|++++.++++|++|-.
T Consensus 94 ~~~~~~~~~~iyv~GG~ 110 (306)
T 3ii7_A 94 SLAACAAEGKIYTSGGS 110 (306)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred ceeEEEECCEEEEECCC
Confidence 45555588999999854
No 62
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=65.05 E-value=81 Score=28.54 Aligned_cols=191 Identities=11% Similarity=0.004 Sum_probs=93.3
Q ss_pred CCCceEEEecCCeeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC--CeeEEEEcCCcEE
Q 015253 110 SAGNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVF 185 (410)
Q Consensus 110 ~~~i~~ia~G~~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~h~~~lt~~G~vy 185 (410)
...|..++-.....++. .||.|..|-......+ .........-...|..|+... .+.+.-..||.|.
T Consensus 82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~---------~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~ 152 (344)
T 4gqb_B 82 EAGVADLTWVGERGILVASDSGAVELWELDENETL---------IVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152 (344)
T ss_dssp SSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSC---------EEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCce---------eEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence 44577777555455555 8999999954321110 011111111123577776543 3444446788899
Q ss_pred EEeCCCCCcccCCCCCCceeccEEecccC--CCceEEEEecCC---eEEEEEcCCcEEEeecCCCCccCCCCCCCCCCce
Q 015253 186 TCGDNSSFCCGHRDTNRPIFRPRLVEALK--GVPCKQVTAGLN---FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPK 260 (410)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~~--~~~i~~i~~G~~---~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~ 260 (410)
.|-.... +.+..+. ...|..++.... ..+.-..||.|..|=.... + ...
T Consensus 153 iwd~~~~---------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~-~----------~~~ 206 (344)
T 4gqb_B 153 VWDLAQQ---------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-K----------PAS 206 (344)
T ss_dssp EEETTTT---------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS-S----------CEE
T ss_pred EEECCCC---------------cEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc-c----------eee
Confidence 9964331 1111121 234566665332 2233467899999932211 0 011
Q ss_pred eecCCCCCCCEEEEEeCC---CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCC---e
Q 015253 261 SIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE---H 334 (410)
Q Consensus 261 ~v~~~~~~~~i~~ia~G~---~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~---h 334 (410)
.+........+..++... ...+.-..||.|..|=.... ..+..+......|..|+...+ +
T Consensus 207 ~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~--------------~~~~~~~~h~~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 207 QIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST--------------SCVLSSAVHSQCVTGLVFSPHSVPF 272 (344)
T ss_dssp ECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------------CCEEEECCSSCEEEEEECSSSSCC
T ss_pred eeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC--------------cEEEEEcCCCCCEEEEEEccCCCeE
Confidence 111111113455665432 22333467888999843221 111112222336777776532 3
Q ss_pred EEEEeCCCCEEEEec
Q 015253 335 VVALDSSGYVYTWGK 349 (410)
Q Consensus 335 s~~lt~~G~vy~wG~ 349 (410)
.+.-..||.|..|-.
T Consensus 273 lasgs~D~~i~vwd~ 287 (344)
T 4gqb_B 273 LASLSEDCSLAVLDS 287 (344)
T ss_dssp EEEEETTSCEEEECT
T ss_pred EEEEeCCCeEEEEEC
Confidence 334568999999953
No 63
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=64.42 E-value=85 Score=28.59 Aligned_cols=214 Identities=12% Similarity=0.069 Sum_probs=111.4
Q ss_pred EEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecC-----CeEEEEEcCCcEEEeec
Q 015253 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGS 242 (410)
Q Consensus 168 i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~~s~~lt~~G~v~~wG~ 242 (410)
.+....+.+++|+.|++|..-...--..+..... .+....+...++.+|+.+.+.. ...+++|++|.+.-.-.
T Consensus 49 ~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G--~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l 126 (327)
T 3uc1_A 49 VCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG--QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKL 126 (327)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC--EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEG
T ss_pred EeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC--EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEH
Confidence 3445677788999999998864432222111110 1111123333567788877664 35778899998887654
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEE--EeCCCeEEEEECCCcEEEEeCC--CCcccCCCCCCCccccEEeecc
Q 015253 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSG--SNFCLGHGEQHDELQPRAIQTF 318 (410)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i--a~G~~h~~~lt~~G~vy~wG~n--~~gqLG~g~~~~~~~p~~i~~~ 318 (410)
.++-... ..-...-.+.+.+.++.+ +.+.++.+++|++|++|-+-.. +--.+|....- +++-.+
T Consensus 127 ~~~~~~~-------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~G-----v~~i~L 194 (327)
T 3uc1_A 127 TDFDSNR-------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSG-----VQGMRF 194 (327)
T ss_dssp GGGCCCC-------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBC-----EESSCC
T ss_pred HHhhccc-------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCC-----eeeecC
Confidence 3322110 011122222223455544 3466789999999999998776 43333322111 112223
Q ss_pred ccCCccEEEEEecC--CeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEE-ecCCC-CCceeeeeeEEecCCcEEEEE
Q 015253 319 RRKGIHVVRVSAGD--EHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEP-LSSLK-SHLAVQGLSVLAEVCPTIVQE 394 (410)
Q Consensus 319 ~~~~~~i~~i~~G~--~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~-v~~~~-~~~i~~~~~i~~G~~~t~~l~ 394 (410)
. .+..|+.+..-. .+.+++|++|.+.-.=-..+-..+.+.. -.. +.... +-.++.+. +..+....++++
T Consensus 195 ~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~-----G~~~~~l~~~~d~lv~~~-~~~~~~~i~l~T 267 (327)
T 3uc1_A 195 N-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGK-----GVLTVMYDRRRGRLVGAL-IVDDDSELYAVT 267 (327)
T ss_dssp C-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSC-----CEESSCCCTTTCSEEEEE-EECTTCEEEEEE
T ss_pred C-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCC-----cEEEEEecCCCCeEEEEE-EeCCCccEEEEc
Confidence 2 344677776543 4567788998766554322221111110 011 11111 12233311 334567788889
Q ss_pred cCCCEEEe
Q 015253 395 DTRSCSDI 402 (410)
Q Consensus 395 ~~g~v~~w 402 (410)
++|.+..+
T Consensus 268 ~~G~~ir~ 275 (327)
T 3uc1_A 268 SGGGVIRT 275 (327)
T ss_dssp GGGCEEEE
T ss_pred CCCeEEEE
Confidence 99988766
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=63.64 E-value=77 Score=27.81 Aligned_cols=206 Identities=6% Similarity=-0.115 Sum_probs=100.1
Q ss_pred CceEEEec--CC-eeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecC-CCCCCEEEEEec-CCeeEEEEcCCcEE
Q 015253 112 GNMQITTG--RY-HTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF-PSAAHVVQVSAS-ENHAAFVLQSGQVF 185 (410)
Q Consensus 112 ~i~~ia~G--~~-h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~-~~~~~i~~i~~G-~~h~~~lt~~G~vy 185 (410)
.|..++-. .. ..+.- .||.|+.|-....++ ...+.. .....|..++.. ....+.-..+|.|+
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~------------~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~ 125 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS------------FQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS------------EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEE
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc------------eEeccccCCCCceEEEEeCCCCEEEEEcCCCeEE
Confidence 45555543 22 33333 789999995411111 111111 022356666554 45566667899999
Q ss_pred EEeCCCCCcccCCCCCCceeccEEeccc-CCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecC
Q 015253 186 TCGDNSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (410)
Q Consensus 186 ~wG~n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~ 264 (410)
.|-...+.. ... .....+ +..+ ....|..++......++.+.+|.|+.|-....+. ........
T Consensus 126 iwd~~~~~~---~~~-~~~~~~--~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---------~~~~~~~~ 190 (342)
T 1yfq_A 126 VIDPRNYGD---GVI-AVKNLN--SNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCED---------DNGTIEES 190 (342)
T ss_dssp EECHHHHTT---BCE-EEEESC--SSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTT---------CCCEEEEC
T ss_pred EEccccccc---ccc-cccCCe--eeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCcccc---------ccceeeec
Confidence 995332100 000 000000 1111 2335677777777766678899999996432110 01111111
Q ss_pred CCCCCCEEEEEeCC---CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeecccc------CCccEEEEEec--CC
Q 015253 265 LEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR------KGIHVVRVSAG--DE 333 (410)
Q Consensus 265 ~~~~~~i~~ia~G~---~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~------~~~~i~~i~~G--~~ 333 (410)
.. ...|..++... ...++-..+|.+..|=....+. .........+..... ....|..++.. ..
T Consensus 191 ~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 264 (342)
T 1yfq_A 191 GL-KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD-----DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK 264 (342)
T ss_dssp SC-SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC-----STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC
T ss_pred CC-CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc-----ccccccceeeecccccccccccceeEEEEEEcCCCC
Confidence 11 13577776653 5566667889999886644310 000011111111100 01156666554 33
Q ss_pred eEEEEeCCCCEEEEecC
Q 015253 334 HVVALDSSGYVYTWGKG 350 (410)
Q Consensus 334 hs~~lt~~G~vy~wG~n 350 (410)
..+.-..+|.|+.|=..
T Consensus 265 ~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 265 FLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CEEEEETTSCEEEEETT
T ss_pred EEEEecCCceEEEEcCc
Confidence 44555678899999643
No 65
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=63.28 E-value=73 Score=27.42 Aligned_cols=186 Identities=6% Similarity=-0.068 Sum_probs=94.5
Q ss_pred CceEEEecCCeeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec--CCeeEEEEcCCcEEEE
Q 015253 112 GNMQITTGRYHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFTC 187 (410)
Q Consensus 112 ~i~~ia~G~~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~h~~~lt~~G~vy~w 187 (410)
.|..++.-....++. .||.|+.|-....- ....+.. ....|..++.. ....+.-..+|.+..|
T Consensus 20 ~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 20 DVRDVVAVDDSKVASVSRDGTVRLWSKDDQW------------LGTVVYT-GQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp CEEEEEEEETTEEEEEETTSEEEEEEESSSE------------EEEEEEE-CSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CcEEEEecCCCEEEEEEcCCcEEEEECCCCE------------EEEEeec-CCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 466665532333444 88999999642210 1111111 12245555443 3445555778888888
Q ss_pred eCCCCCcccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCC
Q 015253 188 GDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEE 267 (410)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~ 267 (410)
-..... ... ....+. .....|..++......+.-+.+|.|..|-. + .....+....
T Consensus 87 ~~~~~~------~~~---~~~~~~-~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~---~----------~~~~~~~~~~- 142 (313)
T 3odt_A 87 PLFATS------GED---PLYTLI-GHQGNVCSLSFQDGVVISGSWDKTAKVWKE---G----------SLVYNLQAHN- 142 (313)
T ss_dssp ETTCCT------TSC---C-CEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEET---T----------EEEEEEECCS-
T ss_pred EeeecC------CCC---cccchh-hcccCEEEEEecCCEEEEEeCCCCEEEEcC---C----------cEEEecccCC-
Confidence 644311 000 000111 123356777776677777788999999930 0 0111111111
Q ss_pred CCCEEEEEe---CCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecC-CeEEEEeCCCC
Q 015253 268 VGSVVQIAA---GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD-EHVVALDSSGY 343 (410)
Q Consensus 268 ~~~i~~ia~---G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~-~hs~~lt~~G~ 343 (410)
..+..++. .....++...+|.|+.|-... ....+... ....|..++... ...++-..+|.
T Consensus 143 -~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------------~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~dg~ 206 (313)
T 3odt_A 143 -ASVWDAKVVSFSENKFLTASADKTIKLWQNDK-------------VIKTFSGI--HNDVVRHLAVVDDGHFISCSNDGL 206 (313)
T ss_dssp -SCEEEEEEEETTTTEEEEEETTSCEEEEETTE-------------EEEEECSS--CSSCEEEEEEEETTEEEEEETTSE
T ss_pred -CceeEEEEccCCCCEEEEEECCCCEEEEecCc-------------eEEEEecc--CcccEEEEEEcCCCeEEEccCCCe
Confidence 35655554 566777778899999994110 01111110 122444444432 23555678889
Q ss_pred EEEEecC
Q 015253 344 VYTWGKG 350 (410)
Q Consensus 344 vy~wG~n 350 (410)
|+.|-..
T Consensus 207 i~i~d~~ 213 (313)
T 3odt_A 207 IKLVDMH 213 (313)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 9999754
No 66
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=62.06 E-value=91 Score=28.11 Aligned_cols=175 Identities=10% Similarity=0.114 Sum_probs=95.6
Q ss_pred EEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec-----CCeEEEEEcCCcEEEeec
Q 015253 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGS 242 (410)
Q Consensus 168 i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~~s~~lt~~G~v~~wG~ 242 (410)
++.+..+.+++|+.|++|.+-...--..+...... .....+...++.+|+.+... ..+.+++|++|.++-.-.
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ--NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------C--BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc--ChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 45567788999999999998654321111111101 11112222345667777654 345788899999998765
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEEEe--CCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeecccc
Q 015253 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320 (410)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~--G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~ 320 (410)
.++-.. ...-.....+.+.+.++.+.. +..+.+++|++|.+.-+-..+.-..|.... =+++-.+.
T Consensus 132 ~~~~~~-------r~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~-----Gv~~i~L~- 198 (312)
T 1suu_A 132 TDFKAV-------KSRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQ-----GVCGMKLK- 198 (312)
T ss_dssp GGGCC-----------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBC-----CEECCCCC-
T ss_pred HHhhcc-------CCCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCC-----CeEeEEeC-
Confidence 443110 011122223333356666544 567899999999999887665433333211 11221222
Q ss_pred CCccEEEEEe--cCCeEEEEeCCCCEEEEecCCCCCCCC
Q 015253 321 KGIHVVRVSA--GDEHVVALDSSGYVYTWGKGYCGALGH 357 (410)
Q Consensus 321 ~~~~i~~i~~--G~~hs~~lt~~G~vy~wG~n~~gqLG~ 357 (410)
.+..|+.+.. ...+-+++|++|.+...-...+-..+.
T Consensus 199 ~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKR 237 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCC
Confidence 2335655543 345677889999877776655533333
No 67
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=61.12 E-value=87 Score=27.57 Aligned_cols=194 Identities=9% Similarity=-0.020 Sum_probs=98.1
Q ss_pred CCceEEEecCC----eeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEe--------cCCeeE
Q 015253 111 AGNMQITTGRY----HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA--------SENHAA 176 (410)
Q Consensus 111 ~~i~~ia~G~~----h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--------G~~h~~ 176 (410)
..|..++-... ..++. .||.|..|-.....+ +..........|..+.. .....+
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~ 133 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM------------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIV 133 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS------------CSEEECCCSSCEEEEEEESGGGCC-CCCEEE
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc------------cEEEEEecccceEEEeeccccccCCCccEEE
Confidence 45677776554 44444 789999996543210 11111111225665532 233555
Q ss_pred EEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccC---CCceEEEE------ecCCeEEEEEcCCcEEEeecCCCCc
Q 015253 177 FVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK---GVPCKQVT------AGLNFTGFLTIRGHVHTCGSNTHGQ 247 (410)
Q Consensus 177 ~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~---~~~i~~i~------~G~~~s~~lt~~G~v~~wG~n~~gq 247 (410)
.-..+|.|..|-...... ....+.... ...+..++ ......+.-..+|.|+.|-....
T Consensus 134 ~~~~d~~i~vwd~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-- 200 (357)
T 3i2n_A 134 TGSRDGTVKVWDPRQKDD-----------PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM-- 200 (357)
T ss_dssp EEETTSCEEEECTTSCSS-----------CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTT--
T ss_pred EEeCCCeEEEEeCCCCCC-----------cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccC--
Confidence 557889999996543210 111111111 22455555 23344455567899999953221
Q ss_pred cCCCCCCCCCCceeecCCCCCCCEEEEEeC-----CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCC
Q 015253 248 LGHGDTLDRPTPKSIAPLEEVGSVVQIAAG-----PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 322 (410)
Q Consensus 248 lG~~~~~~~~~p~~v~~~~~~~~i~~ia~G-----~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~ 322 (410)
.+....... ..|..++.. ....++-..+|.|+.|-...... ........ +....
T Consensus 201 ----------~~~~~~~~~--~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~---~~~~~ 259 (357)
T 3i2n_A 201 ----------ALRWETNIK--NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHP------TKGFASVS---EKAHK 259 (357)
T ss_dssp ----------EEEEEEECS--SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEET------TTEEEEEE---EECCS
T ss_pred ----------ceeeecCCC--CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCc------ccceeeec---cCCCc
Confidence 111111111 467777765 35566667889999985432110 00000011 11123
Q ss_pred ccEEEEEecCCe---EEEEeCCCCEEEEecC
Q 015253 323 IHVVRVSAGDEH---VVALDSSGYVYTWGKG 350 (410)
Q Consensus 323 ~~i~~i~~G~~h---s~~lt~~G~vy~wG~n 350 (410)
..|..++..... .+.-..+|.|+.|-..
T Consensus 260 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 260 STVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp SCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 367777766543 3444678999999754
No 68
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=59.97 E-value=89 Score=27.33 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=12.4
Q ss_pred CeeEEEECCcEEEEeCC
Q 015253 121 YHTLLISNSSVFSCGSS 137 (410)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (410)
.|++++.+++||++|-.
T Consensus 54 ~~~~~~~~~~lyv~GG~ 70 (302)
T 2xn4_A 54 RAGMVYMAGLVFAVGGF 70 (302)
T ss_dssp SCEEEEETTEEEEESCB
T ss_pred cceEEEECCEEEEEeCc
Confidence 45554588999999853
No 69
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=59.33 E-value=1.1e+02 Score=28.17 Aligned_cols=200 Identities=14% Similarity=0.090 Sum_probs=94.6
Q ss_pred CceEEEecC-Ce-eEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC--CeeEEEEcCCcEE
Q 015253 112 GNMQITTGR-YH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVF 185 (410)
Q Consensus 112 ~i~~ia~G~-~h-~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~h~~~lt~~G~vy 185 (410)
.|..|+... .. .++. .||.|..|-.... ..+. .. .+ ...+.....|..|+.-. ...+.-..||.|.
T Consensus 65 ~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~-~~~~--~~----~~-~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~ 136 (437)
T 3gre_A 65 SITSSAVSPGETPYLITGSDQGVIKIWNLKEI-IVGE--VY----SS-SLTYDCSSTVTQITMIPNFDAFAVSSKDGQII 136 (437)
T ss_dssp CEEEEEEECSSSCEEEEEETTSEEEEEEHHHH-HTTC--CC----SC-SEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ceEEEEECCCCCCEEEEecCCceEEEeECccc-ccCc--cc----ce-eeeccCCCCEEEEEEeCCCCEEEEEeCCCEEE
Confidence 466666655 32 3333 7899999964310 0000 00 00 01111223577776643 4455557889999
Q ss_pred EEeCC--CCCcccCCCCCCceeccEEeccc------CCCceEEEEec----CCeEEEEEcCCcEEEeecCCCCccCCCCC
Q 015253 186 TCGDN--SSFCCGHRDTNRPIFRPRLVEAL------KGVPCKQVTAG----LNFTGFLTIRGHVHTCGSNTHGQLGHGDT 253 (410)
Q Consensus 186 ~wG~n--~~gqlG~~~~~~~~~~p~~v~~~------~~~~i~~i~~G----~~~s~~lt~~G~v~~wG~n~~gqlG~~~~ 253 (410)
.|-.. ..+++- .......+..+ ....+..+..- ....+.-+.+|.|+.|-....
T Consensus 137 vwd~~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-------- 202 (437)
T 3gre_A 137 VLKVNHYQQESEV------KFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTL-------- 202 (437)
T ss_dssp EEEEEEEEETTEE------EEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTC--------
T ss_pred EEEeccccCCcee------eccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--------
Confidence 98542 111110 00111111111 23334554422 334555677899999953221
Q ss_pred CCCCCceeecCCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccc-cCCccEEEEEe
Q 015253 254 LDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR-RKGIHVVRVSA 330 (410)
Q Consensus 254 ~~~~~p~~v~~~~~~~~i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~-~~~~~i~~i~~ 330 (410)
.....+........|..++.. ....+.-..+|.|..|-.... ..+..+. .....|..++.
T Consensus 203 ---~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~ 265 (437)
T 3gre_A 203 ---ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN--------------VLIRSWSFGDHAPITHVEV 265 (437)
T ss_dssp ---CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT--------------EEEEEEBCTTCEEEEEEEE
T ss_pred ---eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc--------------cEEEEEecCCCCceEEEEe
Confidence 111122221112467777764 344555678899999964321 1111111 12225666643
Q ss_pred cCC------eEEEEeCCCCEEEEecC
Q 015253 331 GDE------HVVALDSSGYVYTWGKG 350 (410)
Q Consensus 331 G~~------hs~~lt~~G~vy~wG~n 350 (410)
... ..+.-..+|.|..|-..
T Consensus 266 ~~~~s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 266 CQFYGKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp CTTTCTTEEEEEEESTTEEEEEEETT
T ss_pred ccccCCCccEEEEEcCCCcEEEEEcC
Confidence 321 23334567889999754
No 70
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=58.53 E-value=1e+02 Score=27.68 Aligned_cols=164 Identities=9% Similarity=0.021 Sum_probs=76.9
Q ss_pred CCEEEEEec------CCe-eEEEEcCCcEEEEeCCCCCcccCCCCCCceeccE-Eec------ccCCCceEEEEecCC-e
Q 015253 163 AHVVQVSAS------ENH-AAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPR-LVE------ALKGVPCKQVTAGLN-F 227 (410)
Q Consensus 163 ~~i~~i~~G------~~h-~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~-~v~------~~~~~~i~~i~~G~~-~ 227 (410)
..|..++.. ..+ .+.-..+|.|+.|-....-.-+.+. .....|. .+. ......|..++.... .
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 199 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL--TLNWSPTLELQGTVESPMTPSQFATSVDISERGL 199 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT--TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSE
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc--eeeccCcceeeeeeccccCCCCCceEEEECCCce
Confidence 456666655 344 4555788999999654310000000 0011111 111 112334555555433 3
Q ss_pred EEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecC---C-CCCCCEEEEEeC--CCeEEEEECC---CcEEEEeCCCC
Q 015253 228 TGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP---L-EEVGSVVQIAAG--PSYMLAVTGN---GVVYSFGSGSN 298 (410)
Q Consensus 228 s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~---~-~~~~~i~~ia~G--~~h~~~lt~~---G~vy~wG~n~~ 298 (410)
.++-..+|.|+.|-.... .....+.. . .....|..++.. ..+.++-..+ |.|+.|-....
T Consensus 200 l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 200 IATGFNNGTVQISELSTL-----------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp EEEECTTSEEEEEETTTT-----------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC
T ss_pred EEEEeCCCcEEEEECCCC-----------ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 344456788988853221 11111111 1 002467777664 3445555667 88988865431
Q ss_pred cccCCCCCCCccccEEeeccc----------cCCccEEEEEec--CCeEEEEeCCCCEEEEecC
Q 015253 299 FCLGHGEQHDELQPRAIQTFR----------RKGIHVVRVSAG--DEHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 299 gqLG~g~~~~~~~p~~i~~~~----------~~~~~i~~i~~G--~~hs~~lt~~G~vy~wG~n 350 (410)
.. ...+.... .....|..++.. ....+.-..+|.|+.|-..
T Consensus 269 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 269 ER-----------IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp CE-----------EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred cc-----------cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 11 11111100 022356666655 3444555678899999653
No 71
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=57.98 E-value=2e+02 Score=30.89 Aligned_cols=137 Identities=8% Similarity=0.011 Sum_probs=65.1
Q ss_pred CeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecC-CeEEEEEcCCcEEEeecCCCCccCCC
Q 015253 173 NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-NFTGFLTIRGHVHTCGSNTHGQLGHG 251 (410)
Q Consensus 173 ~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-~~s~~lt~~G~v~~wG~n~~gqlG~~ 251 (410)
...+.-..||.|..|-.... ++- .+. .....|..++... ...++...+|.|+.|-....-
T Consensus 1016 ~~l~s~~~dg~i~vwd~~~~-~~~------------~~~-~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~----- 1076 (1249)
T 3sfz_A 1016 KTLISSSEDSVIQVWNWQTG-DYV------------FLQ-AHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGR----- 1076 (1249)
T ss_dssp SCEEEECSSSBEEEEETTTT-EEE------------CCB-CCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTC-----
T ss_pred CEEEEEcCCCEEEEEECCCC-ceE------------EEe-cCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCc-----
Confidence 34444567899999965431 110 000 1122344444433 334556778999999543211
Q ss_pred CCCCCCCceeecCCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEE
Q 015253 252 DTLDRPTPKSIAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS 329 (410)
Q Consensus 252 ~~~~~~~p~~v~~~~~~~~i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~ 329 (410)
....+.... ..|..++.. ....+.-..+|.|+.|-...... +..+......|..++
T Consensus 1077 ------~~~~~~~~~--~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~--------------~~~l~~h~~~v~~~~ 1134 (1249)
T 3sfz_A 1077 ------IERDFTCHQ--GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP--------------LHELKGHNGCVRCSA 1134 (1249)
T ss_dssp ------CCEEEECCS--SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC--------------SBCCCCCSSCEEEEE
T ss_pred ------eeEEEcccC--CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce--------------eeeeccCCCcEEEEE
Confidence 111121111 233333332 23444556678888885432111 111111222466665
Q ss_pred ecCC--eEEEEeCCCCEEEEecC
Q 015253 330 AGDE--HVVALDSSGYVYTWGKG 350 (410)
Q Consensus 330 ~G~~--hs~~lt~~G~vy~wG~n 350 (410)
...+ ..+.-..+|.|+.|-..
T Consensus 1135 ~s~dg~~lat~~~dg~i~vwd~~ 1157 (1249)
T 3sfz_A 1135 FSLDGILLATGDDNGEIRIWNVS 1157 (1249)
T ss_dssp ECSSSSEEEEEETTSCCCEEESS
T ss_pred ECCCCCEEEEEeCCCEEEEEECC
Confidence 5433 33444678889999754
No 72
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=57.05 E-value=1.1e+02 Score=27.70 Aligned_cols=216 Identities=11% Similarity=0.046 Sum_probs=113.4
Q ss_pred ecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC-----CeeEEEEcCCcEEEEeCCC
Q 015253 118 TGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-----NHAAFVLQSGQVFTCGDNS 191 (410)
Q Consensus 118 ~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~h~~~lt~~G~vy~wG~n~ 191 (410)
....+.+++ +.|++|..-...--..+..... ..-...+++....+|+.+.+.. ...+++|++|.+.-.-...
T Consensus 51 ~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G--~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~ 128 (327)
T 3uc1_A 51 STHDLILFFTTQGRVYRAKAYDLPEASRTARG--QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTD 128 (327)
T ss_dssp ETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC--EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGG
T ss_pred CCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC--EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHH
Confidence 344555556 9999998864432222111110 0011224555667888887664 4578889999888765443
Q ss_pred CCcccCCCCCCceeccEEeccc-CCCceEE--EEecCCeEEEEEcCCcEEEeecC--CCCccCCCCCCCCCCceeecCCC
Q 015253 192 SFCCGHRDTNRPIFRPRLVEAL-KGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSN--THGQLGHGDTLDRPTPKSIAPLE 266 (410)
Q Consensus 192 ~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~--i~~G~~~s~~lt~~G~v~~wG~n--~~gqlG~~~~~~~~~p~~v~~~~ 266 (410)
|-... ........+ ++..++. ++.+..+.+++|++|++|.+-.. +--.+|... .-+++-.+.
T Consensus 129 ~~~~~--------r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a-----~Gv~~i~L~ 195 (327)
T 3uc1_A 129 FDSNR--------SGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRAT-----SGVQGMRFN 195 (327)
T ss_dssp GCCCC--------SSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTS-----BCEESSCCC
T ss_pred hhccc--------cCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCC-----CCeeeecCC
Confidence 21100 011111111 2333333 34466778899999999998765 332233221 112233344
Q ss_pred CCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEE--EecCCeEEEEeCCC
Q 015253 267 EVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRV--SAGDEHVVALDSSG 342 (410)
Q Consensus 267 ~~~~i~~ia~G~--~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i--~~G~~hs~~lt~~G 342 (410)
+.++|+.+..-. .+.+++|++|.+.-.-..++-..+.+.. -...-.+...+-.++.+ ..+....+++|++|
T Consensus 196 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~-----G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G 270 (327)
T 3uc1_A 196 IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGK-----GVLTVMYDRRRGRLVGALIVDDDSELYAVTSGG 270 (327)
T ss_dssp TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSC-----CEESSCCCTTTCSEEEEEEECTTCEEEEEEGGG
T ss_pred CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCC-----cEEEEEecCCCCeEEEEEEeCCCccEEEEcCCC
Confidence 446788876653 4688889999766554333322211110 01111111111234433 23567889999999
Q ss_pred CEEEEecCCCC
Q 015253 343 YVYTWGKGYCG 353 (410)
Q Consensus 343 ~vy~wG~n~~g 353 (410)
++.-+-...--
T Consensus 271 ~~ir~~~~~i~ 281 (327)
T 3uc1_A 271 GVIRTAARQVR 281 (327)
T ss_dssp CEEEEEGGGSC
T ss_pred eEEEEehhhcc
Confidence 99988654433
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=56.06 E-value=1.1e+02 Score=27.39 Aligned_cols=210 Identities=9% Similarity=-0.007 Sum_probs=97.7
Q ss_pred CceEEEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC---------CeeEEEEcC
Q 015253 112 GNMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE---------NHAAFVLQS 181 (410)
Q Consensus 112 ~i~~ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~---------~h~~~lt~~ 181 (410)
.|..|+......+.- .||.|+.|-...... .........+. .....|..++... ...+....+
T Consensus 18 ~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~------~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~d 90 (397)
T 1sq9_A 18 DIFSVSACNSFTVSCSGDGYLKVWDNKLLDN------ENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFS 90 (397)
T ss_dssp CEEEEEECSSEEEEEETTSEEEEEESBCCTT------CCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred CeEEEEecCCeEEEEcCCCEEEEEECCCccc------ccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCC
Confidence 467777666443444 899999997643210 00000111222 2223566665543 344445678
Q ss_pred CcEEEEeCCCCCcccCCCCCCceeccEEecccC----CCceEEEEec------CCe-EEEEEcCCcEEEeecCCCCccCC
Q 015253 182 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALK----GVPCKQVTAG------LNF-TGFLTIRGHVHTCGSNTHGQLGH 250 (410)
Q Consensus 182 G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~----~~~i~~i~~G------~~~-s~~lt~~G~v~~wG~n~~gqlG~ 250 (410)
|.|+.|-...... ........+.... ...|..++.. ..+ .+..+.+|.|+.|-......-..
T Consensus 91 g~i~iw~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 91 GDLLFYRITREDE-------TKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp SCEEEEEEEECTT-------TCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred CCEEEEEccCCcc-------cccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 9999996433110 0000012222221 2446666554 344 44556789999995433000000
Q ss_pred CCCCCCCCce-eecC-----CCCCCCEEEEEeCCC-eEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeecccc---
Q 015253 251 GDTLDRPTPK-SIAP-----LEEVGSVVQIAAGPS-YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR--- 320 (410)
Q Consensus 251 ~~~~~~~~p~-~v~~-----~~~~~~i~~ia~G~~-h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~--- 320 (410)
+. .....|. .+.. ......|..++...+ ..++-..+|.|+.|-.... ..+..+..
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~ 228 (397)
T 1sq9_A 164 SL-TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTL--------------RPLYNFESQHS 228 (397)
T ss_dssp HT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTT--------------EEEEEEECCC-
T ss_pred cc-eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCC--------------ceeEEEecccc
Confidence 00 0011121 2211 111134666655433 4444457888998865321 11111211
Q ss_pred C---CccEEEEEec--CCeEEEEeCC---CCEEEEecC
Q 015253 321 K---GIHVVRVSAG--DEHVVALDSS---GYVYTWGKG 350 (410)
Q Consensus 321 ~---~~~i~~i~~G--~~hs~~lt~~---G~vy~wG~n 350 (410)
. ...|..++.. ..+.++-..+ |.|+.|-..
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~ 266 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 266 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred ccccCCccceEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 1 3356666654 3344444566 888888754
No 74
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=53.48 E-value=1.3e+02 Score=27.15 Aligned_cols=148 Identities=10% Similarity=0.003 Sum_probs=74.7
Q ss_pred CEEEEEec---CCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEec-ccCCCceEEEEecC--CeEEE-EEcCCc
Q 015253 164 HVVQVSAS---ENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVE-ALKGVPCKQVTAGL--NFTGF-LTIRGH 236 (410)
Q Consensus 164 ~i~~i~~G---~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~-~~~~~~i~~i~~G~--~~s~~-lt~~G~ 236 (410)
.|..|+.. ....+.-..||.|..|-... ++.-. .+. ......+..|+... .+.++ -+.++.
T Consensus 183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~-~~~~~-----------~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~ 250 (357)
T 4g56_B 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRK-PKPAT-----------RIDFCASDTIPTSVTWHPEKDDTFACGDETGN 250 (357)
T ss_dssp CEEEEEECTTCSSCEEEEETTSCEEECCTTS-SSCBC-----------BCCCTTCCSCEEEEEECTTSTTEEEEEESSSC
T ss_pred CEEEEEEccCCCceeeeeccCCceEEEECCC-Cceee-----------eeeeccccccccchhhhhcccceEEEeecccc
Confidence 57777653 23345557889999984332 11000 000 01123455665432 22333 367888
Q ss_pred EEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCC---CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccE
Q 015253 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGP---SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 313 (410)
Q Consensus 237 v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~---~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~ 313 (410)
|+.|-.... .....+.... ..|..++... ...+.-.+||.|+.|=... + .
T Consensus 251 i~~wd~~~~-----------~~~~~~~~~~--~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~-~-------------~ 303 (357)
T 4g56_B 251 VSLVNIKNP-----------DSAQTSAVHS--QNITGLAYSYHSSPFLASISEDCTVAVLDADF-S-------------E 303 (357)
T ss_dssp EEEEESSCG-----------GGCEEECCCS--SCEEEEEECSSSSCCEEEEETTSCEEEECTTS-C-------------E
T ss_pred eeEEECCCC-----------cEeEEEeccc--eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC-C-------------c
Confidence 998843211 1111222221 4677777643 3344456899999994321 1 1
Q ss_pred EeeccccCCccEEEEEecC---CeEEEEeCCCCEEEEecCC
Q 015253 314 AIQTFRRKGIHVVRVSAGD---EHVVALDSSGYVYTWGKGY 351 (410)
Q Consensus 314 ~i~~~~~~~~~i~~i~~G~---~hs~~lt~~G~vy~wG~n~ 351 (410)
.+..+. ....|..|+... ...+.-..||.|+.|=-..
T Consensus 304 ~~~~~~-H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 304 VFRDLS-HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp EEEECC-CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred EeEECC-CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 122222 223677777642 2333346789999997543
No 75
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=50.61 E-value=1.3e+02 Score=26.40 Aligned_cols=157 Identities=10% Similarity=-0.041 Sum_probs=72.2
Q ss_pred CceEEEecC--CeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC--CeeEEEEcC-----
Q 015253 112 GNMQITTGR--YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQS----- 181 (410)
Q Consensus 112 ~i~~ia~G~--~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~h~~~lt~~----- 181 (410)
.|..++-.. ...+.. .||.|+.|-....- ....+. ....|..++... ...++...+
T Consensus 76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------------~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQ------------CVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEEEEETTTCC------------EEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------EEEEee--cCCCeEEEEEccCCCEEEEecCCccCCC
Confidence 466666543 333334 88999999643211 111112 222455555543 344444555
Q ss_pred CcEEEEeCCCCCcccCCCCCCceeccEEeccc-CCCceEEEEe--cCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCC
Q 015253 182 GQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVTA--GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPT 258 (410)
Q Consensus 182 G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~i~~--G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~ 258 (410)
|.|+.|-.........-.... ......+... ....+..++. .....++-+.+|.|+.|-....+ ..
T Consensus 142 g~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----------~~ 210 (369)
T 3zwl_B 142 GSINIYEIERDSATHELTKVS-EEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY----------EY 210 (369)
T ss_dssp CEEEEEEEEECTTTCCEEEEC-SSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT----------EE
T ss_pred CEEEEEEecCCccceeecccc-cceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc----------Ee
Confidence 888888654321110000000 0000111111 1113344433 33455556778899988432211 01
Q ss_pred ceeecCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeC
Q 015253 259 PKSIAPLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGS 295 (410)
Q Consensus 259 p~~v~~~~~~~~i~~ia~G~--~h~~~lt~~G~vy~wG~ 295 (410)
...+... ...|..++... ...++...+|.|+.|-.
T Consensus 211 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 211 VDSIDLH--EKSISDMQFSPDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp EEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred EEEEecC--CCceeEEEECCCCCEEEEecCCceEEEEEC
Confidence 1111111 14577776643 34555567888999854
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=49.88 E-value=4.4 Score=40.22 Aligned_cols=34 Identities=12% Similarity=0.208 Sum_probs=26.4
Q ss_pred ccccCChhHHHHHHHhCCCC-hhhhhcccccccccCC
Q 015253 9 SIEELPSHLIFEILTSGRLS-AVDLAHLELTSKTFGG 44 (410)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l~-~~dl~~l~~t~~~f~~ 44 (410)
.+++||+|||.+|| .+|+ .+|+.+...+||.+..
T Consensus 5 ~~~~LPdevL~~If--~~L~~~~d~~~~s~vck~W~~ 39 (594)
T 2p1m_B 5 IALSFPEEVLEHVF--SFIQLDKDRNSVSLVCKSWYE 39 (594)
T ss_dssp -----CHHHHHHHH--HTCCCHHHHHHHHTSCHHHHH
T ss_pred chhhCCHHHHHHHH--hhcCCchhHHHHHHHHHHHHH
Confidence 46789999999999 8999 9999999999987654
No 77
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=49.55 E-value=1.5e+02 Score=26.71 Aligned_cols=138 Identities=9% Similarity=0.019 Sum_probs=72.1
Q ss_pred CeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec--CCeEEEEEcCCcEEEeecCCCCccCC
Q 015253 173 NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGH 250 (410)
Q Consensus 173 ~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~s~~lt~~G~v~~wG~n~~gqlG~ 250 (410)
...++.+.+|.|+.|-....-. ...+.. ....|..++.. ....+.-..+|.|+.|-...
T Consensus 218 ~~~~~~~~~g~i~~~d~~~~~~------------~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~------ 278 (425)
T 1r5m_A 218 DKFVIPGPKGAIFVYQITEKTP------------TGKLIG-HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN------ 278 (425)
T ss_dssp TEEEEECGGGCEEEEETTCSSC------------SEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEECSSS------
T ss_pred CEEEEEcCCCeEEEEEcCCCce------------eeeecc-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCC------
Confidence 4455667788899886544110 011111 12234444443 33455556788898884321
Q ss_pred CCCCCCCCceeecCCCCCCCEEEEEeCCC-eEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEE
Q 015253 251 GDTLDRPTPKSIAPLEEVGSVVQIAAGPS-YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVS 329 (410)
Q Consensus 251 ~~~~~~~~p~~v~~~~~~~~i~~ia~G~~-h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~ 329 (410)
......+.... ..|..++...+ ..++...+|.|+.|=.... ..+..+......|..++
T Consensus 279 -----~~~~~~~~~~~--~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~i~~~~ 337 (425)
T 1r5m_A 279 -----GNSQNCFYGHS--QSIVSASWVGDDKVISCSMDGSVRLWSLKQN--------------TLLALSIVDGVPIFAGR 337 (425)
T ss_dssp -----BSCSEEECCCS--SCEEEEEEETTTEEEEEETTSEEEEEETTTT--------------EEEEEEECTTCCEEEEE
T ss_pred -----CccceEecCCC--ccEEEEEECCCCEEEEEeCCCcEEEEECCCC--------------cEeEecccCCccEEEEE
Confidence 11112222221 45766666443 5666678899999964321 11222221233566666
Q ss_pred ec--CCeEEEEeCCCCEEEEecC
Q 015253 330 AG--DEHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 330 ~G--~~hs~~lt~~G~vy~wG~n 350 (410)
.. ....++-..+|.|+.|-..
T Consensus 338 ~s~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 338 ISQDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp ECTTSSEEEEEETTSCEEEEECH
T ss_pred EcCCCCEEEEEECCCeEEEEECC
Confidence 55 3345555678999999743
No 78
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=48.97 E-value=6.1 Score=39.16 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=29.2
Q ss_pred ccccCChhHHHHHHHhCCC-ChhhhhcccccccccCC
Q 015253 9 SIEELPSHLIFEILTSGRL-SAVDLAHLELTSKTFGG 44 (410)
Q Consensus 9 ~~~~lp~~i~~~~~~~~~l-~~~dl~~l~~t~~~f~~ 44 (410)
...+||+|||.+|| .+| +.+|+.+....||.+..
T Consensus 12 ~~~~LPdeil~~I~--~~L~~~~d~~~~s~vck~W~~ 46 (592)
T 3ogk_B 12 SCVATVDDVIEQVM--TYITDPKDRDSASLVCRRWFK 46 (592)
T ss_dssp CCCCCGGGTHHHHH--TTCCCHHHHHHHTTSCHHHHH
T ss_pred ccCCCCHHHHHHHH--HhcCCHHHHHHHHHHhHHHHH
Confidence 45689999999999 999 89999999999986643
No 79
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=47.42 E-value=1.6e+02 Score=26.61 Aligned_cols=101 Identities=10% Similarity=0.013 Sum_probs=53.6
Q ss_pred eEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCC---eEEEEECCCcEEEEeCCCCcccCC
Q 015253 227 FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGH 303 (410)
Q Consensus 227 ~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~---h~~~lt~~G~vy~wG~n~~gqLG~ 303 (410)
+.++-+.+|.|..|-.... ..+..+.... ...|..++...+ ..+.-..+|.|+.|=.....+
T Consensus 261 ~l~~~~~dg~i~i~d~~~~-----------~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~--- 325 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFSK-----------EQTIQLPSKF-TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC--- 325 (420)
T ss_dssp EEEEEETTSCEEEEETTTC-----------CEEEEECCTT-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---
T ss_pred EEEEEcCCCeEEEEECCCC-----------ceeEEccccc-CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---
Confidence 3344567888888843211 1122222111 146777777554 566667889999996533111
Q ss_pred CCCCCccccEEeeccccCCccEEEEEecCCeEEE-EeCCCCEEEEecCC
Q 015253 304 GEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVA-LDSSGYVYTWGKGY 351 (410)
Q Consensus 304 g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~-lt~~G~vy~wG~n~ 351 (410)
....+... ....|..+.......++ -..||.|..|-...
T Consensus 326 -------~~~~~~~~--~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 326 -------PVGEFLIN--EGTPINNVYFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp -------CSEEEEES--TTSCEEEEEEETTEEEEEETTTEEEEEEEECC
T ss_pred -------chhhhhcc--CCCCceEEEeCCCCEEEEecCCccEEEEeccC
Confidence 01122211 22256666555554444 35688999997543
No 80
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=47.07 E-value=1.4e+02 Score=25.58 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=9.6
Q ss_pred eEEEEeCCCCEEEEec
Q 015253 334 HVVALDSSGYVYTWGK 349 (410)
Q Consensus 334 hs~~lt~~G~vy~wG~ 349 (410)
..++++.+|++|+-..
T Consensus 210 ~~i~~d~~G~l~v~~~ 225 (286)
T 1q7f_A 210 IGVGINSNGEILIADN 225 (286)
T ss_dssp EEEEECTTCCEEEEEC
T ss_pred cEEEECCCCCEEEEeC
Confidence 3466666666666553
No 81
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=46.67 E-value=48 Score=31.13 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=42.6
Q ss_pred EEEEEeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEEEec
Q 015253 271 VVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGK 349 (410)
Q Consensus 271 i~~ia~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~ 349 (410)
|.++++ ....+++.++|.|..|=..... ....+..+. ..+.++.+-....++++.+|.|+.|=-
T Consensus 90 V~~l~f-d~~~L~v~~~~~l~v~dv~sl~-----------~~~~~~~~~---~~v~~i~~~~p~~av~~~dG~L~v~dl 153 (388)
T 1xip_A 90 VIFVCF-HGDQVLVSTRNALYSLDLEELS-----------EFRTVTSFE---KPVFQLKNVNNTLVILNSVNDLSALDL 153 (388)
T ss_dssp EEEEEE-ETTEEEEEESSEEEEEESSSTT-----------CEEEEEECS---SCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred eeEEEE-CCCEEEEEcCCcEEEEEchhhh-----------ccCccceee---cceeeEEecCCCEEEEECCCCEEEEEc
Confidence 999999 7777888888999988543321 111222221 245666666656777899999999954
No 82
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=45.75 E-value=1.5e+02 Score=25.67 Aligned_cols=149 Identities=11% Similarity=0.122 Sum_probs=71.1
Q ss_pred CEEEEEecC--CeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEe--cCCeEEEEEcCCcEEE
Q 015253 164 HVVQVSASE--NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHT 239 (410)
Q Consensus 164 ~i~~i~~G~--~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~s~~lt~~G~v~~ 239 (410)
.|..++... ...+.-..+|.|..|-....-. ...+.......+..++. ...+.++-+.+|.|..
T Consensus 151 ~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i 218 (312)
T 4ery_A 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC------------LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCE------------EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------------eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 566665543 3444556788899986543110 01111111223333333 3345555677888988
Q ss_pred eecCCCCccCCCCCCCCCCceeecCCCCC-CCE-EEEE-eCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEee
Q 015253 240 CGSNTHGQLGHGDTLDRPTPKSIAPLEEV-GSV-VQIA-AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 316 (410)
Q Consensus 240 wG~n~~gqlG~~~~~~~~~p~~v~~~~~~-~~i-~~ia-~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~ 316 (410)
|-......+ ..+...... ..+ .... .+..+.+.-.+||.|+.|-.... ..+.
T Consensus 219 wd~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~--------------~~~~ 273 (312)
T 4ery_A 219 WDYSKGKCL-----------KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK--------------EIVQ 273 (312)
T ss_dssp EETTTTEEE-----------EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC--------------CEEE
T ss_pred EECCCCcEE-----------EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc--------------hhhh
Confidence 854321111 011111000 001 1111 23344445567899999965331 1222
Q ss_pred ccccCCccEEEEEecCCeEEEEe----CCCCEEEEec
Q 015253 317 TFRRKGIHVVRVSAGDEHVVALD----SSGYVYTWGK 349 (410)
Q Consensus 317 ~~~~~~~~i~~i~~G~~hs~~lt----~~G~vy~wG~ 349 (410)
.+......|..++.......+.+ .||.|..|-.
T Consensus 274 ~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 274 KLQGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred hhhccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 22222336777777665544432 4888888854
No 83
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=45.03 E-value=2.2e+02 Score=27.34 Aligned_cols=148 Identities=10% Similarity=0.095 Sum_probs=79.1
Q ss_pred CEEEEEecCC---eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecc---cCCCceEEEEe-cCCeEEEEEcCCc
Q 015253 164 HVVQVSASEN---HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEA---LKGVPCKQVTA-GLNFTGFLTIRGH 236 (410)
Q Consensus 164 ~i~~i~~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~---~~~~~i~~i~~-G~~~s~~lt~~G~ 236 (410)
.|..++...+ ..+..+.+|.|+.|-....-. ...+.. .....|..++. .....+....+|.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~ 275 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF------------LKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT 275 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE------------EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE------------eEEecccccccCCceEEEEEcCCCEEEEEcCCCc
Confidence 5777776544 445557899999996543110 111100 11234555554 3444555667889
Q ss_pred EEEeecCCCCccCCCCCCCCCCceeecCC--CCCCCEEEEEe-CCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccE
Q 015253 237 VHTCGSNTHGQLGHGDTLDRPTPKSIAPL--EEVGSVVQIAA-GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPR 313 (410)
Q Consensus 237 v~~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~~i~~ia~-G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~ 313 (410)
|..|-...... ...+... .....+..+.. ...+.++...+|.|+.|-... ..
T Consensus 276 i~~wd~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~--------------~~ 330 (615)
T 1pgu_A 276 IRVWDVTTSKC-----------VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH--------------DE 330 (615)
T ss_dssp EEEEETTTTEE-----------EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE--------------EE
T ss_pred EEEEECCCCcE-----------EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC--------------Cc
Confidence 99995432110 0011110 00022333333 556677778899999996432 11
Q ss_pred EeeccccCCccEEEEEecCCeEEEEeCCCCEEEEecC
Q 015253 314 AIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 314 ~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~wG~n 350 (410)
.+..+......|..++. .. .+.-..+|.|..|-..
T Consensus 331 ~~~~~~~~~~~v~~~~~-~~-l~~~~~dg~i~~w~~~ 365 (615)
T 1pgu_A 331 VLKTISGHNKGITALTV-NP-LISGSYDGRIMEWSSS 365 (615)
T ss_dssp EEEEECCCSSCEEEEET-TT-TEEEETTSCEEETTTT
T ss_pred EEEEEeCCCCCEEEEEe-cC-cEEECCCCeEEEEEch
Confidence 22222223346888888 66 6666788999998643
No 84
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=44.81 E-value=2.6e+02 Score=28.28 Aligned_cols=199 Identities=11% Similarity=0.006 Sum_probs=97.2
Q ss_pred CceEEEecC---CeeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC----CeeEEEEcCC
Q 015253 112 GNMQITTGR---YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE----NHAAFVLQSG 182 (410)
Q Consensus 112 ~i~~ia~G~---~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~----~h~~~lt~~G 182 (410)
.|..++-.. ...++. .||.|+.|-.... ...+..........|..++... ...+.-+.+|
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-----------~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-----------cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 466776532 233444 8899999964321 0011111122233677777653 3556667899
Q ss_pred cEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec---------------CCeEEEEEcCCcEEEeecCCCCc
Q 015253 183 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---------------LNFTGFLTIRGHVHTCGSNTHGQ 247 (410)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---------------~~~s~~lt~~G~v~~wG~n~~gq 247 (410)
.|..|-...... ..+..+.. ....|..++.. ....+.-..+|.|..|-.....
T Consensus 124 ~I~vwdl~~~~~----------~~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~- 191 (753)
T 3jro_A 124 KVSVVEFKENGT----------TSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA- 191 (753)
T ss_dssp EEEEEECCSSSC----------CCCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-
T ss_pred cEEEEEeecCCC----------cceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-
Confidence 999997554211 01111111 12234555443 3345556778999999432210
Q ss_pred cCCCCCCCCCCce-eecCCCCCCCEEEEEeCCC-----eEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccC
Q 015253 248 LGHGDTLDRPTPK-SIAPLEEVGSVVQIAAGPS-----YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321 (410)
Q Consensus 248 lG~~~~~~~~~p~-~v~~~~~~~~i~~ia~G~~-----h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~ 321 (410)
....+. .+... ...|..++...+ ..+.-..+|.|+.|-...... .... .+......
T Consensus 192 -------~~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~------~~~~---~~~~~~~~ 253 (753)
T 3jro_A 192 -------QTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG------PWKK---TLLKEEKF 253 (753)
T ss_dssp -------TEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS------CCBC---CBSSSSCC
T ss_pred -------ccceeeeeecCC--CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC------ccee---EEeccCCC
Confidence 000111 11111 146888877643 455566799999996543210 0000 00000001
Q ss_pred CccEEEEEe--cCCeEEEEeCCCCEEEEecCC
Q 015253 322 GIHVVRVSA--GDEHVVALDSSGYVYTWGKGY 351 (410)
Q Consensus 322 ~~~i~~i~~--G~~hs~~lt~~G~vy~wG~n~ 351 (410)
...|..++. ...+.+.-..+|.|+.|-.+.
T Consensus 254 ~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 254 PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 112333333 333444456889999997653
No 85
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=44.65 E-value=1.6e+02 Score=25.63 Aligned_cols=16 Identities=13% Similarity=0.227 Sum_probs=12.1
Q ss_pred CeeEEEECCcEEEEeC
Q 015253 121 YHTLLISNSSVFSCGS 136 (410)
Q Consensus 121 ~h~~~l~~g~vy~wG~ 136 (410)
.|++++-++++|++|-
T Consensus 101 ~~~~~~~~~~iyv~GG 116 (302)
T 2xn4_A 101 TLGAAVLNGLLYAVGG 116 (302)
T ss_dssp SCEEEEETTEEEEEEE
T ss_pred ceEEEEECCEEEEEcC
Confidence 4555557889999985
No 86
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=44.10 E-value=75 Score=28.15 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=12.7
Q ss_pred CCeEEEEeCCCCEEEEec
Q 015253 332 DEHVVALDSSGYVYTWGK 349 (410)
Q Consensus 332 ~~hs~~lt~~G~vy~wG~ 349 (410)
..|+++. .+++||++|-
T Consensus 150 ~~~~~~~-~~~~iyv~GG 166 (318)
T 2woz_A 150 YGHNVIS-HNGMIYCLGG 166 (318)
T ss_dssp ESCEEEE-ETTEEEEECC
T ss_pred cccEEEE-ECCEEEEEcC
Confidence 3566666 6789999994
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=43.13 E-value=1.8e+02 Score=25.92 Aligned_cols=209 Identities=9% Similarity=0.046 Sum_probs=99.6
Q ss_pred CceEEEecC--CeeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecC----CCCCCEEEEEec---CCeeEEEEc
Q 015253 112 GNMQITTGR--YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF----PSAAHVVQVSAS---ENHAAFVLQ 180 (410)
Q Consensus 112 ~i~~ia~G~--~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~----~~~~~i~~i~~G---~~h~~~lt~ 180 (410)
.|..++-.. ...++. .||.|..|-.........- .......... .....|..++.- ....+.-..
T Consensus 45 ~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~ 120 (408)
T 4a11_B 45 GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY----TCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF 120 (408)
T ss_dssp CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE----EECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET
T ss_pred cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE----eccccccccccccccCCCcEEEEEEccCCCcEEEEEeC
Confidence 466666543 233333 7999999975432211110 0000001110 122367777763 345566677
Q ss_pred CCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecC-----CeEEEEEcCCcEEEeecCCCCccCCCCCCC
Q 015253 181 SGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGSNTHGQLGHGDTLD 255 (410)
Q Consensus 181 ~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~ 255 (410)
+|.|..|-....- ....+. . ...+..+.... ...++-..+|.|+.|-....
T Consensus 121 d~~i~iwd~~~~~------------~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---------- 176 (408)
T 4a11_B 121 DKTLKVWDTNTLQ------------TADVFN-F-EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---------- 176 (408)
T ss_dssp TSEEEEEETTTTE------------EEEEEE-C-SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS----------
T ss_pred CCeEEEeeCCCCc------------cceecc-C-CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc----------
Confidence 9999999654311 001111 1 11233333322 14455577899999954321
Q ss_pred CCCceeecCCCCCCCEEEEEeCCCe---EEEEECCCcEEEEeCCCCccc-CCCCCCC-ccccEEeeccccCCccEEEEEe
Q 015253 256 RPTPKSIAPLEEVGSVVQIAAGPSY---MLAVTGNGVVYSFGSGSNFCL-GHGEQHD-ELQPRAIQTFRRKGIHVVRVSA 330 (410)
Q Consensus 256 ~~~p~~v~~~~~~~~i~~ia~G~~h---~~~lt~~G~vy~wG~n~~gqL-G~g~~~~-~~~p~~i~~~~~~~~~i~~i~~ 330 (410)
.....+.... ..|..++..... .+.-..+|.|+.|-....... -.-.... ................|..++.
T Consensus 177 -~~~~~~~~~~--~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 177 -SCSHILQGHR--QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp -CCCEEECCCC--SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred -ceeeeecCCC--CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 1112222221 457777765432 455678899999976432210 0000000 0000000001112235666666
Q ss_pred cCC--eEEEEeCCCCEEEEecCC
Q 015253 331 GDE--HVVALDSSGYVYTWGKGY 351 (410)
Q Consensus 331 G~~--hs~~lt~~G~vy~wG~n~ 351 (410)
... +.++...+|.+..|-...
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~ 276 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSN 276 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTT
T ss_pred cCCCCEEEEecCCCeEEEEECCC
Confidence 543 555567899999998654
No 88
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=43.10 E-value=2e+02 Score=26.37 Aligned_cols=141 Identities=12% Similarity=0.064 Sum_probs=73.2
Q ss_pred cCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCC-CCEEEEEecC--CeeEEEEcCCcEEEEeCCCCCc
Q 015253 119 GRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSA-AHVVQVSASE--NHAAFVLQSGQVFTCGDNSSFC 194 (410)
Q Consensus 119 G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~-~~i~~i~~G~--~h~~~lt~~G~vy~wG~n~~gq 194 (410)
+....+++ .|+.||.|-... |+ ....+.+... ..|..|+... .+.+.-+.||.|..|-....-+
T Consensus 114 S~~n~lAvgld~tV~lWd~~t-g~-----------~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 114 SSGNVLAVALDNSVYLWSASS-GD-----------ILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp CTTSEEEEEETTEEEEEETTT-CC-----------EEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred CCCCEEEEEeCCEEEEEECCC-CC-----------EEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcE
Confidence 34568888 999999996432 11 1112233222 2577777653 3444457899999996543110
Q ss_pred ccCCCCCCceeccEEecccCCCceEEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEE
Q 015253 195 CGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI 274 (410)
Q Consensus 195 lG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i 274 (410)
...+.. ....+..++......+.-..++.++.|-..... .....+.... ..+..+
T Consensus 182 ------------~~~~~~-h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~----------~~~~~~~~h~--~~~~~~ 236 (420)
T 4gga_A 182 ------------LRNMTS-HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAE----------HHVATLSGHS--QEVCGL 236 (420)
T ss_dssp ------------EEEECC-CSSCEEEEEEETTEEEEEETTSEEEEEETTSSS----------CEEEEEECCS--SCEEEE
T ss_pred ------------EEEEeC-CCCceEEEeeCCCEEEEEeCCCceeEeeecccc----------eeeEEecccc--cceeee
Confidence 111111 123456666655555555677788777432111 0011111111 234333
Q ss_pred Ee--CCCeEEEEECCCcEEEEeCC
Q 015253 275 AA--GPSYMLAVTGNGVVYSFGSG 296 (410)
Q Consensus 275 a~--G~~h~~~lt~~G~vy~wG~n 296 (410)
.. ...+.+....||.+..|-..
T Consensus 237 ~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 237 RWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp EECTTSSEEEEEETTSCEEEEESS
T ss_pred eecCCCCeeeeeeccccceEEeec
Confidence 33 33455666778888888653
No 89
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=42.27 E-value=2e+02 Score=26.05 Aligned_cols=218 Identities=13% Similarity=0.077 Sum_probs=108.2
Q ss_pred EEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecC-----CeEEEEEcCCcEEEeec
Q 015253 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL-----NFTGFLTIRGHVHTCGS 242 (410)
Q Consensus 168 i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~~s~~lt~~G~v~~wG~ 242 (410)
++....+.+++|+.|++|..-...--..+..... .+....+...++.+|+.+..-. .+.+++|++|.+.-.-.
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G--~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG--QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC--EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC--cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 4556788899999999999865443222221111 1111122222455677654433 35778899998887644
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEE--EeCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeecccc
Q 015253 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320 (410)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i--a~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~ 320 (410)
.++-... .......-.+.+.+.++.+ ..+.++.+++|++|+++-+-.++--..|.. ...+++-.+.
T Consensus 124 ~e~~~~~------r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~-----a~GV~~i~L~- 191 (323)
T 1wp5_A 124 KHYKAQR------YSKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVR-----AAGVKGMNLK- 191 (323)
T ss_dssp GGGCCSC------CSSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSS-----CCCEECCCCC-
T ss_pred HHhhhcc------ccCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCC-----CcCEEEEEeC-
Confidence 3332110 0111222222222455553 336788999999999998877654333331 1223332232
Q ss_pred CCccEEEEEec--CC-eEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEecCCcEEEEEcCC
Q 015253 321 KGIHVVRVSAG--DE-HVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLAEVCPTIVQEDTR 397 (410)
Q Consensus 321 ~~~~i~~i~~G--~~-hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~G~~~t~~l~~~g 397 (410)
.+..|+.+..- .. .-+.+|++|...-.-...+-.-+.+.. -...+...+. .+..++.+. +..+...-++++++|
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~~~~~-~~~~l~~~~-~v~~~~~i~~it~~g 268 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILRELKA-NPHRISGFV-VAQDSDTIYLQTEKS 268 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSCCCSS-SCCCEEEEE-EECTTCEEEEEETTS
T ss_pred CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECeeecCC-CCceEEEEE-EeCCCCeEEEEeCCC
Confidence 23356655432 22 466677777644433322211111111 0111111111 122333200 233567778889999
Q ss_pred CEEEe
Q 015253 398 SCSDI 402 (410)
Q Consensus 398 ~v~~w 402 (410)
.+...
T Consensus 269 ~~ir~ 273 (323)
T 1wp5_A 269 FIETI 273 (323)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 87654
No 90
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=42.26 E-value=89 Score=27.60 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=12.6
Q ss_pred CeeEEEECCcEEEEeCC
Q 015253 121 YHTLLISNSSVFSCGSS 137 (410)
Q Consensus 121 ~h~~~l~~g~vy~wG~n 137 (410)
.|++++.++++|++|-.
T Consensus 141 ~~~~~~~~~~iyv~GG~ 157 (315)
T 4asc_A 141 GHTVLSHMDLVYVIGGK 157 (315)
T ss_dssp SCEEEEETTEEEEECCB
T ss_pred ceeEEEECCEEEEEeCC
Confidence 45555588899999954
No 91
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}
Probab=41.58 E-value=1.3e+02 Score=23.72 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=35.2
Q ss_pred CEEEEEe-CCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCCCCEEE
Q 015253 270 SVVQIAA-GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYT 346 (410)
Q Consensus 270 ~i~~ia~-G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~G~vy~ 346 (410)
.++.|.+ ...+-+++..+|+||+--. ..+......+.........+..+ -....+|++++|++|.
T Consensus 51 G~V~I~gv~sg~yL~m~~~G~v~Gs~~----------~~~ec~flE~~~e~~g~v~i~~~--~sg~Ylamnk~Grl~G 116 (143)
T 3snv_A 51 GEVLLKSTETGQYLRINPDGTVDGTRD----------RSDTHIQFQISPEGNGEVLLKST--ETGQYLRINPDGTVDG 116 (143)
T ss_dssp TEEEEEETTTTEEEEECTTSBEEEECC----------TTCTTSEEEEEECSTTEEEEEET--TTCCEEEECTTSBEEE
T ss_pred CeEEEEEEcccEEEeECCCCCEeeccc----------CCCcceEEEEEecCCcEEEEEEe--eCCEEEEEcCCCcCcC
Confidence 3555554 5667889999999997422 11122222222211111122222 2346799999999963
No 92
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=40.68 E-value=2e+02 Score=25.74 Aligned_cols=196 Identities=11% Similarity=0.085 Sum_probs=91.8
Q ss_pred CceEEEecCCe-eEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec--CCeeEEEEcCCcEEE
Q 015253 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS--ENHAAFVLQSGQVFT 186 (410)
Q Consensus 112 ~i~~ia~G~~h-~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~h~~~lt~~G~vy~ 186 (410)
.|..++-.... .++. .+|.|+.|-. .++ ....+. .....|..++.. ....+....+|.|+.
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~--~~~-----------~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 175 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNK--TGA-----------LLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTIL 175 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET--TSC-----------EEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeC--CCC-----------eeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEE
Confidence 46666655432 3333 7889999951 111 111111 122357777664 344555677899999
Q ss_pred EeCCCCCcccCCCCCCceeccEEec----ccCCCceEEEEe-cCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCcee
Q 015253 187 CGDNSSFCCGHRDTNRPIFRPRLVE----ALKGVPCKQVTA-GLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKS 261 (410)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~----~~~~~~i~~i~~-G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~ 261 (410)
|-......+-.-.... ..+..+. ...+..+..++. .....++...+|.|+.|-.... .....
T Consensus 176 wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~-----------~~~~~ 242 (425)
T 1r5m_A 176 WNVISGTVMQHFELKE--TGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK-----------TPTGK 242 (425)
T ss_dssp EETTTTEEEEEECCC-----------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCS-----------SCSEE
T ss_pred EECCCCcEEEEeeccc--cCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCC-----------ceeee
Confidence 9764421111000000 0000000 000000222221 1234455667888998854321 11112
Q ss_pred ecCCCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCC-eEEEE
Q 015253 262 IAPLEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDE-HVVAL 338 (410)
Q Consensus 262 v~~~~~~~~i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~-hs~~l 338 (410)
+.... ..|..++.. ....+.-..+|.|+.|-.... .....+.. ....|..++.... ..++.
T Consensus 243 ~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----------~~~~~~~~---~~~~i~~~~~~~~~~l~~~ 306 (425)
T 1r5m_A 243 LIGHH--GPISVLEFNDTNKLLLSASDDGTLRIWHGGNG-----------NSQNCFYG---HSQSIVSASWVGDDKVISC 306 (425)
T ss_dssp ECCCS--SCEEEEEEETTTTEEEEEETTSCEEEECSSSB-----------SCSEEECC---CSSCEEEEEEETTTEEEEE
T ss_pred eccCC--CceEEEEECCCCCEEEEEcCCCEEEEEECCCC-----------ccceEecC---CCccEEEEEECCCCEEEEE
Confidence 22111 356665543 345566667889999854321 11111111 2225666655443 55556
Q ss_pred eCCCCEEEEecC
Q 015253 339 DSSGYVYTWGKG 350 (410)
Q Consensus 339 t~~G~vy~wG~n 350 (410)
..+|.|+.|-..
T Consensus 307 ~~d~~i~i~d~~ 318 (425)
T 1r5m_A 307 SMDGSVRLWSLK 318 (425)
T ss_dssp ETTSEEEEEETT
T ss_pred eCCCcEEEEECC
Confidence 788999999753
No 93
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=40.30 E-value=1.8e+02 Score=25.09 Aligned_cols=187 Identities=11% Similarity=0.064 Sum_probs=89.4
Q ss_pred CceEEEecCCe-eEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC--CeeEEEEcCCcEEE
Q 015253 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVFT 186 (410)
Q Consensus 112 ~i~~ia~G~~h-~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~h~~~lt~~G~vy~ 186 (410)
.|..++-.... .++. .||.|..|...... ...........|..++... ...+.-..||.|..
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~v 91 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGK-------------FEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI 91 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc-------------cchhhccCCCceEEEEEcCCCCEEEEECCCCEEEE
Confidence 35555544332 2333 78999999753211 1111111222566666553 33444567899999
Q ss_pred EeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec--CCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecC
Q 015253 187 CGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (410)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G--~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~ 264 (410)
|-....-. . ..+.. ....|..++.. ....+.-..+|.|..|-.... .....+..
T Consensus 92 wd~~~~~~---------~---~~~~~-~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-----------~~~~~~~~ 147 (312)
T 4ery_A 92 WDVSSGKC---------L---KTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG-----------KCLKTLPA 147 (312)
T ss_dssp EETTTCCE---------E---EEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-----------CEEEEECC
T ss_pred EECCCCcE---------E---EEEcC-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-----------EEEEEecC
Confidence 96543110 0 11111 11234444333 233444567888888843211 01111211
Q ss_pred CCCCCCEEEEEeCC--CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEec--CCeEEEEeC
Q 015253 265 LEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG--DEHVVALDS 340 (410)
Q Consensus 265 ~~~~~~i~~ia~G~--~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G--~~hs~~lt~ 340 (410)
. ...|..++... ...+.-..+|.|..|-...... ...+. ......+..++.. ..+.++-..
T Consensus 148 ~--~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 148 H--SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC-----------LKTLI--DDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp C--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------EEEEC--CSSCCCEEEEEECTTSSEEEEEET
T ss_pred C--CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----------eeEEe--ccCCCceEEEEECCCCCEEEEEcC
Confidence 1 13566666543 3455566788898885432110 11111 1112234444433 345555678
Q ss_pred CCCEEEEecC
Q 015253 341 SGYVYTWGKG 350 (410)
Q Consensus 341 ~G~vy~wG~n 350 (410)
+|.|..|-..
T Consensus 213 d~~i~iwd~~ 222 (312)
T 4ery_A 213 DNTLKLWDYS 222 (312)
T ss_dssp TTEEEEEETT
T ss_pred CCeEEEEECC
Confidence 8899999653
No 94
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=39.16 E-value=1.9e+02 Score=25.13 Aligned_cols=189 Identities=10% Similarity=-0.026 Sum_probs=94.9
Q ss_pred CceEEEecCCe--eEEEE-----CCcEEEEeCCCCCccCCCCCCCceeceeee-cCCCCCCEEEEEecCC-----eeEEE
Q 015253 112 GNMQITTGRYH--TLLIS-----NSSVFSCGSSLCGVLGHGPETTQCVSFTRI-NFPSAAHVVQVSASEN-----HAAFV 178 (410)
Q Consensus 112 ~i~~ia~G~~h--~~~l~-----~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v-~~~~~~~i~~i~~G~~-----h~~~l 178 (410)
.|..|+--... .++.. ||.|+.|-.... ....+ .......|..++.... ..+.-
T Consensus 20 ~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 20 TVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG-------------DLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp CEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS-------------SEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred ceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC-------------cccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 46666655432 23333 788999854321 11111 1122336777777653 34445
Q ss_pred EcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEe--------cCCeEEEEEcCCcEEEeecCCCCccCC
Q 015253 179 LQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--------GLNFTGFLTIRGHVHTCGSNTHGQLGH 250 (410)
Q Consensus 179 t~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--------G~~~s~~lt~~G~v~~wG~n~~gqlG~ 250 (410)
..+|.|..|-.....+ ....+.. ....|..+.. .....+.-..+|.|..|-.....
T Consensus 87 ~~dg~i~iwd~~~~~~-----------~~~~~~~-~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~---- 150 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEM-----------PVYSVKG-HKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD---- 150 (357)
T ss_dssp ETTSCEEEECTTSCSS-----------CSEEECC-CSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS----
T ss_pred cCCCeEEEEeCCCCCc-----------cEEEEEe-cccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC----
Confidence 6789999996544210 0011111 1223455522 23345555678999999433211
Q ss_pred CCCCCCCCceeecCCCC--CCCEEEEE------eCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCC
Q 015253 251 GDTLDRPTPKSIAPLEE--VGSVVQIA------AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG 322 (410)
Q Consensus 251 ~~~~~~~~p~~v~~~~~--~~~i~~ia------~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~ 322 (410)
.....+..... ...+..++ ......++-..+|.|+.|-..... +..... ..
T Consensus 151 ------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------~~~~~~---~~ 209 (357)
T 3i2n_A 151 ------DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA------------LRWETN---IK 209 (357)
T ss_dssp ------SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE------------EEEEEE---CS
T ss_pred ------CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc------------eeeecC---CC
Confidence 01112221111 13566666 344555666778999999653311 111111 12
Q ss_pred ccEEEEEecC-----CeEEEEeCCCCEEEEecC
Q 015253 323 IHVVRVSAGD-----EHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 323 ~~i~~i~~G~-----~hs~~lt~~G~vy~wG~n 350 (410)
..|..++... ...++-..+|.|+.|-..
T Consensus 210 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 242 (357)
T 3i2n_A 210 NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMR 242 (357)
T ss_dssp SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEE
T ss_pred CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCc
Confidence 2566666643 455556778999999643
No 95
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=37.37 E-value=1.5e+02 Score=26.57 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=13.0
Q ss_pred CCeEEEEEcCCcEEEeec
Q 015253 225 LNFTGFLTIRGHVHTCGS 242 (410)
Q Consensus 225 ~~~s~~lt~~G~v~~wG~ 242 (410)
..|+++. -+++||.+|-
T Consensus 110 ~~~~~~~-~~~~iyv~GG 126 (357)
T 2uvk_A 110 AGHVTFV-HNGKAYVTGG 126 (357)
T ss_dssp SSEEEEE-ETTEEEEEEC
T ss_pred ccceEEE-ECCEEEEEeC
Confidence 4566666 6889999984
No 96
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=36.68 E-value=2.2e+02 Score=25.00 Aligned_cols=198 Identities=11% Similarity=0.006 Sum_probs=98.5
Q ss_pred CceEEEecC---CeeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC----CeeEEEEcCC
Q 015253 112 GNMQITTGR---YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE----NHAAFVLQSG 182 (410)
Q Consensus 112 ~i~~ia~G~---~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~----~h~~~lt~~G 182 (410)
.|..++-.. ...++. .||.|..|-.... ...+..........|..++... ...+....+|
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~ 125 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-----------RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 125 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEEETT-----------EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC-----------ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCC
Confidence 466676531 233333 7899999954321 0011111112223677777653 3456667899
Q ss_pred cEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec---------------CCeEEEEEcCCcEEEeecCCCCc
Q 015253 183 QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---------------LNFTGFLTIRGHVHTCGSNTHGQ 247 (410)
Q Consensus 183 ~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---------------~~~s~~lt~~G~v~~wG~n~~gq 247 (410)
.|..|-...... ..+..+.. ....|..++.. ....++-..+|.|+.|-.....
T Consensus 126 ~i~v~d~~~~~~----------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~- 193 (379)
T 3jrp_A 126 KVSVVEFKENGT----------TSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA- 193 (379)
T ss_dssp EEEEEECCTTSC----------CCEEEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT-
T ss_pred cEEEEecCCCCc----------eeeEEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC-
Confidence 999997654211 01111111 12234555543 3445556778999999432110
Q ss_pred cCCCCCCCCCCc-eeecCCCCCCCEEEEEeCC-----CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccC
Q 015253 248 LGHGDTLDRPTP-KSIAPLEEVGSVVQIAAGP-----SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRK 321 (410)
Q Consensus 248 lG~~~~~~~~~p-~~v~~~~~~~~i~~ia~G~-----~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~ 321 (410)
....+ ..+... ...|..++... ...+....+|.|..|-..... ......+......
T Consensus 194 -------~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~ 255 (379)
T 3jrp_A 194 -------QTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ---------GPWKKTLLKEEKF 255 (379)
T ss_dssp -------TEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT---------SCCEEEESSSSCC
T ss_pred -------cceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC---------ccceeeeeccccC
Confidence 00011 111111 14677777664 345556778999999654311 0001111111112
Q ss_pred CccEEEEEecCC--eEEEEeCCCCEEEEecC
Q 015253 322 GIHVVRVSAGDE--HVVALDSSGYVYTWGKG 350 (410)
Q Consensus 322 ~~~i~~i~~G~~--hs~~lt~~G~vy~wG~n 350 (410)
...|..++.... +.++-..+|.|+.|-.+
T Consensus 256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 256 PDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 225666665433 44445689999999654
No 97
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}
Probab=36.19 E-value=1.6e+02 Score=23.20 Aligned_cols=106 Identities=13% Similarity=0.065 Sum_probs=60.8
Q ss_pred CCEEEEEeCC-CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEec-CCeEEEEeCCCCEEE
Q 015253 269 GSVVQIAAGP-SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG-DEHVVALDSSGYVYT 346 (410)
Q Consensus 269 ~~i~~ia~G~-~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G-~~hs~~lt~~G~vy~ 346 (410)
....++.|-. .+-+-+..||+|-+-.... +...-..+.... ..++.|.|- ..+.+++..+|+||+
T Consensus 30 ~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~----------~~~s~lei~sv~---~G~V~L~g~~sg~yL~mn~~G~l~G 96 (142)
T 3p6j_A 30 NGEVLLKSTETGQYLRINPDGTVDGTRDRS----------DTHIQFQISPEG---NGEVLLKSTETGQYLRINPDGTVDG 96 (142)
T ss_dssp TTCEEEEETTTCCEEEECTTSBEEEECCTT----------CGGGCEEEEEEE---TTEEEEEETTTTEEEEECTTSBEEE
T ss_pred CcEEEEEEeCCCEEEEECCCCCEeeecCCC----------CCceEEEEEEcc---CCEEEEEEecCCEEEeECCCCCEee
Confidence 5788999976 6778888999998754321 111111222211 147778765 577899999999996
Q ss_pred EecCCCCCCCCCCCCCccccEEecCCCCCceeeeeeEEe-cCCcEEEEEcCCCEEE
Q 015253 347 WGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQGLSVLA-EVCPTIVQEDTRSCSD 401 (410)
Q Consensus 347 wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~i~~~~~i~~-G~~~t~~l~~~g~v~~ 401 (410)
--. ..+.....++...... .+. |.. -..--+++..+|++|.
T Consensus 97 s~~----------~t~ecsflEi~~en~y-~v~---i~g~~sg~YLamnk~Grlyg 138 (142)
T 3p6j_A 97 TRD----------RSDTHIQFQISPEGNG-EVL---LKSTETGQYLRINPDGTVDG 138 (142)
T ss_dssp ECC----------TTCGGGCEEEEECSTT-CEE---EEETTTCCEEEECTTSBEEE
T ss_pred ccc----------CCCCceEEEEEeecCc-EEE---EEEecCCEEEEECCCcCCcc
Confidence 321 1122333333222221 222 221 1224788999999985
No 98
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=35.70 E-value=2.4e+02 Score=25.24 Aligned_cols=191 Identities=8% Similarity=0.027 Sum_probs=0.0
Q ss_pred cCCeeEEE-EC-CcEEEEeCCCCCccCCCCCCCc------eeceeeecCCCCCCEEEEEecCC-eeEEEE--cCCcEEEE
Q 015253 119 GRYHTLLI-SN-SSVFSCGSSLCGVLGHGPETTQ------CVSFTRINFPSAAHVVQVSASEN-HAAFVL--QSGQVFTC 187 (410)
Q Consensus 119 G~~h~~~l-~~-g~vy~wG~n~~gqlG~~~~~~~------~~~p~~v~~~~~~~i~~i~~G~~-h~~~lt--~~G~vy~w 187 (410)
+.-.++.. .+ +++++.|....-..=....... ..............|..++.... ..++++ .+|.|..|
T Consensus 114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193 (416)
T ss_dssp SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE
T ss_pred cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE
Q ss_pred eCCCCCcccCCCCCCceeccEEecccC-----CCceEEEEecCC---eEEEEEcCC---cEEEeecCCCCccCCCCCCCC
Q 015253 188 GDNSSFCCGHRDTNRPIFRPRLVEALK-----GVPCKQVTAGLN---FTGFLTIRG---HVHTCGSNTHGQLGHGDTLDR 256 (410)
Q Consensus 188 G~n~~gqlG~~~~~~~~~~p~~v~~~~-----~~~i~~i~~G~~---~s~~lt~~G---~v~~wG~n~~gqlG~~~~~~~ 256 (410)
-... ......+.... ...|..++.... ..+.-..+| .|+.| +....
T Consensus 194 d~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~-----------d~~~~ 250 (416)
T 2pm9_A 194 DLKA------------KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW-----------DLRNA 250 (416)
T ss_dssp ETTT------------TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE-----------ETTST
T ss_pred ECCC------------CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE-----------eCCCC
Q ss_pred CCceeecC-CCCCCCEEEEEe---CCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecC
Q 015253 257 PTPKSIAP-LEEVGSVVQIAA---GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD 332 (410)
Q Consensus 257 ~~p~~v~~-~~~~~~i~~ia~---G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~ 332 (410)
..+..... ... ..|..++. .....+.-..+|.|+.| +......+..+......|..++...
T Consensus 251 ~~~~~~~~~~~~-~~v~~~~~s~~~~~~l~s~~~dg~v~~w--------------d~~~~~~~~~~~~~~~~v~~~~~s~ 315 (416)
T 2pm9_A 251 NTPLQTLNQGHQ-KGILSLDWCHQDEHLLLSSGRDNTVLLW--------------NPESAEQLSQFPARGNWCFKTKFAP 315 (416)
T ss_dssp TSCSBCCCSCCS-SCEEEEEECSSCSSCEEEEESSSEEEEE--------------CSSSCCEEEEEECSSSCCCCEEECT
T ss_pred CCCcEEeecCcc-CceeEEEeCCCCCCeEEEEeCCCCEEEe--------------eCCCCccceeecCCCCceEEEEECC
Q ss_pred ---CeEEEEeCCCCEEEE
Q 015253 333 ---EHVVALDSSGYVYTW 347 (410)
Q Consensus 333 ---~hs~~lt~~G~vy~w 347 (410)
...+.-..+|.|..|
T Consensus 316 ~~~~~l~s~~~d~~i~iw 333 (416)
T 2pm9_A 316 EAPDLFACASFDNKIEVQ 333 (416)
T ss_dssp TCTTEEEECCSSSEEEEE
T ss_pred CCCCEEEEEecCCcEEEE
No 99
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=35.61 E-value=1.5e+02 Score=22.88 Aligned_cols=103 Identities=15% Similarity=0.071 Sum_probs=52.0
Q ss_pred EEEEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEE-eCCCeEEEEECCCcEEEEeCCC
Q 015253 219 KQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA-AGPSYMLAVTGNGVVYSFGSGS 297 (410)
Q Consensus 219 ~~i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia-~G~~h~~~lt~~G~vy~wG~n~ 297 (410)
.--.|...+-+-+..||+|-.-... .+...-.++.... ..++.|. .-..+-+++..+|+||+--.
T Consensus 9 ~~~~~~~g~~L~I~~dG~V~Gt~~~----------~~~~s~l~~~~v~--~G~V~I~g~~sg~yL~m~~~G~v~Gs~~-- 74 (132)
T 3q7x_A 9 LLRSTETGQFLRINPDGTVDGTRDR----------SDPGIQFQISPEG--NGEVLLRSTETGQFLRINPDGTVDGTRD-- 74 (132)
T ss_dssp EEEETTTCCEEEECTTSBEEEECCT----------TCGGGCEEEEEEE--TTEEEEEETTTCCEEEECTTSBEEEECC--
T ss_pred eeeeccCcEEEEECCCCcEEeecCC----------CCCCcEEEEEecc--cCEEEEEEEcccEEEEECCCCCEeeccC--
Confidence 3345666677778889999765321 1111111222211 1244443 33456788899999997422
Q ss_pred CcccCCCCCCCccccEEeeccccCCccEEEE-EecCCeEEEEeCCCCEEE
Q 015253 298 NFCLGHGEQHDELQPRAIQTFRRKGIHVVRV-SAGDEHVVALDSSGYVYT 346 (410)
Q Consensus 298 ~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i-~~G~~hs~~lt~~G~vy~ 346 (410)
..+......+.... . ..+.+ ..-....++++++|++|.
T Consensus 75 --------~s~ec~flE~~~~~-~--g~v~ikg~~sg~YLamnk~G~lyg 113 (132)
T 3q7x_A 75 --------RSDPGIQFQISPEG-N--GEVLLRSTETGQFLRINPDGTVDG 113 (132)
T ss_dssp ---------CCGGGCEEEEEEE-T--TEEEEEETTTCCEEEECTTSBEEE
T ss_pred --------CCCCceeEEEEeec-C--cEEEEEeccCCeEEEECCCCcCcC
Confidence 11112222222111 1 12222 222344899999999996
No 100
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=32.80 E-value=2.7e+02 Score=24.84 Aligned_cols=217 Identities=12% Similarity=0.054 Sum_probs=111.3
Q ss_pred EEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEe-----cCCeeEEEEcCCcEEEEeC
Q 015253 116 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSA-----SENHAAFVLQSGQVFTCGD 189 (410)
Q Consensus 116 ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~-----G~~h~~~lt~~G~vy~wG~ 189 (410)
++.+..+.+++ +.|++|..-...--..+...... .....+++....+|+.+.. .....+++|++|.+--.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l 126 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARGR--PIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 126 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCE--EGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCe--EhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEH
Confidence 44455666667 99999998765432222211110 0112234455557877754 2335777899998876654
Q ss_pred CCCCcccCCCCCCceeccEEeccc-CCCceEE--EEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCC
Q 015253 190 NSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 266 (410)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~--i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 266 (410)
..+-... ........+ ++..++. ...+..+.+++|++|+++-+-..+.-.+|... .-++.-.+.
T Consensus 127 ~e~~~~~--------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a-----~Gv~~i~L~ 193 (307)
T 1zi0_A 127 TEFNRLR--------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNT-----TGVRGIRLG 193 (307)
T ss_dssp GGGTTCC--------TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTC-----CCEECCCCC
T ss_pred HHhhccc--------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCC-----CCeEeEEeC
Confidence 3321110 011111111 2233443 33466788899999999988665543333321 112222333
Q ss_pred CCCCEEEEEeC--CCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEe--cCCeEEEEeCCC
Q 015253 267 EVGSVVQIAAG--PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSA--GDEHVVALDSSG 342 (410)
Q Consensus 267 ~~~~i~~ia~G--~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~--G~~hs~~lt~~G 342 (410)
+.+.|+.+..- ....+++|++|.+--.-..++-.-+.+. .-.++..+...+..++.+.. ....-+++|++|
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~-----kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g 268 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT-----KGVISIKVTERNGLVVGAVQVDDCDQIMMITDAG 268 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS-----CCEESSCCCTTTCSEEEEEEECTTCEEEEEESSC
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC-----CCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCC
Confidence 44678877543 3456777888865444333321111111 11111112222224554433 556678899999
Q ss_pred CEEEEecCCC
Q 015253 343 YVYTWGKGYC 352 (410)
Q Consensus 343 ~vy~wG~n~~ 352 (410)
++.-.-.+.-
T Consensus 269 ~~ir~~~~~i 278 (307)
T 1zi0_A 269 TLVRTRVSEI 278 (307)
T ss_dssp CEEEEEGGGS
T ss_pred cEEEEecccc
Confidence 9887765443
No 101
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=32.04 E-value=2.5e+02 Score=24.31 Aligned_cols=127 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred EEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEe--cCCeEEEEEcCCcEEEeecC
Q 015253 166 VQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA--GLNFTGFLTIRGHVHTCGSN 243 (410)
Q Consensus 166 ~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~s~~lt~~G~v~~wG~n 243 (410)
...+....+.+++|+.|++|.+-....-.. ...-......+...++.+|+.+.. ...+.+++|++|.+.-.-..
T Consensus 38 ~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~----r~~G~~i~~~i~L~~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~ 113 (256)
T 1zvt_A 38 AVKGKSNQPVVFVDSTGRSYAIDPITLPSA----RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 113 (256)
T ss_dssp EEEEETTSCEEEEETTSEEEEECGGGSCCS----SSCCEEGGGTCCCCTTCCEEEEECCCTTCEEEEEBTTSEEEEEEGG
T ss_pred EEEeCCCCEEEEEeCCCeEEEEEHHHCCCc----CCCCeEeeeeecCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHH
Q ss_pred CCCccCCCCCCCCCCceeecCCCCCCCEEEEEeC---CCeEEEEECCCcEEEEeCCCCcccCC
Q 015253 244 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG---PSYMLAVTGNGVVYSFGSGSNFCLGH 303 (410)
Q Consensus 244 ~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G---~~h~~~lt~~G~vy~wG~n~~gqLG~ 303 (410)
++ ......-..+..+.+.+.++.+..- .++.+++|++|++.-+-.++.-.+|.
T Consensus 114 e~-------~~~~r~G~~~i~L~~~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~~ei~~~gR 169 (256)
T 1zvt_A 114 DL-------VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 169 (256)
T ss_dssp GG-------CCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEEGGGSCBCSS
T ss_pred Hh-------cccCcCceEEEEECCCCEEEEEEEecCCCCEEEEEcCCCeEEEEEHHHCCCcCc
No 102
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=31.44 E-value=3.5e+02 Score=25.78 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=78.0
Q ss_pred CEEEEEecCC---eeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCC--CceEEEEecCC---eEEEEEcCC
Q 015253 164 HVVQVSASEN---HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKG--VPCKQVTAGLN---FTGFLTIRG 235 (410)
Q Consensus 164 ~i~~i~~G~~---h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~--~~i~~i~~G~~---~s~~lt~~G 235 (410)
.|..++.... ..+.-..+|.|..|-.... .....+....+ ..|..++.... ..+..+.+|
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 229 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPF------------KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR 229 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTB------------EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTC
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc------------ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCC
Confidence 5666666544 4555678899999964321 01111111111 14666665543 445557789
Q ss_pred cEEEeecCCCCccCCCCCCCCCCceeecCC--CCCCCEEEEEe-CCCeEEEEECCCcEEEEeCCCCcccCCCCCCCcccc
Q 015253 236 HVHTCGSNTHGQLGHGDTLDRPTPKSIAPL--EEVGSVVQIAA-GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQP 312 (410)
Q Consensus 236 ~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~--~~~~~i~~ia~-G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p 312 (410)
.|+.|-..... ....+... .....|..++. ...+.+....+|.|..|-......+
T Consensus 230 ~i~vwd~~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~----------- 287 (615)
T 1pgu_A 230 KISCFDGKSGE-----------FLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCV----------- 287 (615)
T ss_dssp CEEEEETTTCC-----------EEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEE-----------
T ss_pred eEEEEECCCCC-----------EeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEE-----------
Confidence 99999532211 11111010 11246777766 4455666677899999965431110
Q ss_pred EEeecc-ccCCccEEEEEe-cCCeEEEEeCCCCEEEEecC
Q 015253 313 RAIQTF-RRKGIHVVRVSA-GDEHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 313 ~~i~~~-~~~~~~i~~i~~-G~~hs~~lt~~G~vy~wG~n 350 (410)
..+... ......+..+.. ...+.++-..+|.++.|-..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 288 QKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp EEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT
T ss_pred EEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC
Confidence 111110 000112333332 55666677889999999754
No 103
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=29.69 E-value=3e+02 Score=24.52 Aligned_cols=151 Identities=11% Similarity=0.039 Sum_probs=71.9
Q ss_pred CEEEEEecC-CeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecC--CeEEEEEcCCcEEEe
Q 015253 164 HVVQVSASE-NHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL--NFTGFLTIRGHVHTC 240 (410)
Q Consensus 164 ~i~~i~~G~-~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~~s~~lt~~G~v~~w 240 (410)
.|..++... ...+.-..||.|..|-..... ..........--...|..|+... .+.+.-..+|.|..|
T Consensus 84 ~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~---------~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iw 154 (344)
T 4gqb_B 84 GVADLTWVGERGILVASDSGAVELWELDENE---------TLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154 (344)
T ss_dssp CEEEEEEETTTEEEEEETTSEEEEEEECTTS---------SCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CEEEEEEeCCCeEEEEECCCEEEEEeccCCC---------ceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 477776543 444555788999999654311 11111111000122355555433 334444678888888
Q ss_pred ecCCCCccCCCCCCCCCCceeecCCC-CCCCEEEEEeCCC---eEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEee
Q 015253 241 GSNTHGQLGHGDTLDRPTPKSIAPLE-EVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQ 316 (410)
Q Consensus 241 G~n~~gqlG~~~~~~~~~p~~v~~~~-~~~~i~~ia~G~~---h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~ 316 (410)
-... ...+..+. ....|..++.... ..+.-..||.|..|=.... .+...-
T Consensus 155 d~~~--------------~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~------------~~~~~~ 208 (344)
T 4gqb_B 155 DLAQ--------------QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP------------KPASQI 208 (344)
T ss_dssp ETTT--------------TEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSS------------SCEEEC
T ss_pred ECCC--------------CcEEEEEcCcCCceEEEEecCCCCCceeeecccccccccccccc------------ceeeee
Confidence 4321 11122111 1146777776443 2334567899999943221 111110
Q ss_pred ccccCCccEEEEEecC--CeEEE-EeCCCCEEEEec
Q 015253 317 TFRRKGIHVVRVSAGD--EHVVA-LDSSGYVYTWGK 349 (410)
Q Consensus 317 ~~~~~~~~i~~i~~G~--~hs~~-lt~~G~vy~wG~ 349 (410)
........+..++... .+.++ -..||.|..|=.
T Consensus 209 ~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 209 GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp C----CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred ecceeeccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence 0111222455555432 22333 367888999854
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=28.58 E-value=3.3e+02 Score=24.52 Aligned_cols=153 Identities=13% Similarity=0.069 Sum_probs=78.2
Q ss_pred EEecCCeeEEE---EcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec---CCeEEEEEcCCcEEEee
Q 015253 168 VSASENHAAFV---LQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG---LNFTGFLTIRGHVHTCG 241 (410)
Q Consensus 168 i~~G~~h~~~l---t~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~~s~~lt~~G~v~~wG 241 (410)
+++......++ ..+|.|+.|-....+++.... + .+.. -...|..++.. ....+.-..||.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~-------~-~~~~-h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNV-------P-LVCG-HTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTC-------C-CBCC-CSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCC-------c-eEec-CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 44555554444 458999999876544331100 0 0111 12245666653 34444556789999996
Q ss_pred cCCCCccCCCCCCCCCCc-eeecCCCCCCCEEEEEeCCC---eEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeec
Q 015253 242 SNTHGQLGHGDTLDRPTP-KSIAPLEEVGSVVQIAAGPS---YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQT 317 (410)
Q Consensus 242 ~n~~gqlG~~~~~~~~~p-~~v~~~~~~~~i~~ia~G~~---h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~ 317 (410)
....+... ....+ ..+.... ..|..++.... ..+.-..+|.|+.|-.... ..+..
T Consensus 111 ~~~~~~~~-----~~~~~~~~~~~h~--~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--------------~~~~~ 169 (402)
T 2aq5_A 111 IPDGGLVL-----PLREPVITLEGHT--KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--------------AAVLT 169 (402)
T ss_dssp CCTTCCSS-----CBCSCSEEEECCS--SCEEEEEECSSBTTEEEEEETTSCEEEEETTTT--------------EEEEE
T ss_pred ccCCCCcc-----ccCCceEEecCCC--CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC--------------CccEE
Confidence 54322110 01111 1222221 46777776544 4455567899999965331 11111
Q ss_pred c--ccCCccEEEEEec--CCeEEEEeCCCCEEEEecC
Q 015253 318 F--RRKGIHVVRVSAG--DEHVVALDSSGYVYTWGKG 350 (410)
Q Consensus 318 ~--~~~~~~i~~i~~G--~~hs~~lt~~G~vy~wG~n 350 (410)
+ ......|..++.. ....+.-..+|.|+.|-..
T Consensus 170 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 170 LGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp ECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred EecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 1 1122356666654 3344445678889998743
No 105
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=28.38 E-value=2.9e+02 Score=23.83 Aligned_cols=159 Identities=10% Similarity=0.009 Sum_probs=73.3
Q ss_pred CCceEEEEec-CCeEEEEEcCCc-EEEeecCCCCccCCCCCCCCCCceeecCCCCCCCEEEEEeCCCeEEEEECCCc-EE
Q 015253 215 GVPCKQVTAG-LNFTGFLTIRGH-VHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGV-VY 291 (410)
Q Consensus 215 ~~~i~~i~~G-~~~s~~lt~~G~-v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia~G~~h~~~lt~~G~-vy 291 (410)
+-++.-..++ ....++++.+|+ ++.|+.... + ......|..+....+ .++.-...+.....+++.+|+ +|
T Consensus 87 dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~--~----~~~~~~~~~v~~~~~-G~~lv~~~~~~~v~~~d~~G~~~w 159 (276)
T 3no2_A 87 DGNALVAWCGHPSTILEVNMKGEVLSKTEFETG--I----ERPHAQFRQINKNKK-GNYLVPLFATSEVREIAPNGQLLN 159 (276)
T ss_dssp TSCEEEEEESTTEEEEEECTTSCEEEEEEECCS--C----SSGGGSCSCCEECTT-SCEEEEETTTTEEEEECTTSCEEE
T ss_pred CCCEEEEecCCCCEEEEEeCCCCEEEEEeccCC--C----CcccccccCceECCC-CCEEEEecCCCEEEEECCCCCEEE
Confidence 3444444555 445566777887 566654211 0 001111222222222 345433334455666666674 45
Q ss_pred EEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecCCeEEEEeCC-CC-EEEEecCCCCCCCCCCCCCccccEEe
Q 015253 292 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSS-GY-VYTWGKGYCGALGHGDEIDKTLPEPL 369 (410)
Q Consensus 292 ~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~~hs~~lt~~-G~-vy~wG~n~~gqLG~g~~~~~~~P~~v 369 (410)
.++... .|.-+..+. +-++.-........++++.+ |+ +|.++.+... ......|.-+
T Consensus 160 ~~~~~~-------------~~~~~~~~~--~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~~~~~~ 218 (276)
T 3no2_A 160 SVKLSG-------------TPFSSAFLD--NGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLFFVAQL 218 (276)
T ss_dssp EEECSS-------------CCCEEEECT--TSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCSEEEEE
T ss_pred EEECCC-------------CccceeEcC--CCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC------Cccccccccc
Confidence 555421 122222222 22444333333346677776 75 5666643210 0112234444
Q ss_pred cCCCCCceeeeeeEEe--c---------CCcEEEEEcCCCEEEeeeCC
Q 015253 370 SSLKSHLAVQGLSVLA--E---------VCPTIVQEDTRSCSDIICHD 406 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~--G---------~~~t~~l~~~g~v~~wG~~~ 406 (410)
..+.+-.+. |+. | .-+.+.++.+|++ .|-.+.
T Consensus 219 ~~~~~G~i~----v~~~~g~~~~~~~~~~~~~~~~~~~g~~-~W~~~~ 261 (276)
T 3no2_A 219 FPLQNGGLY----ICNWQGHDREAGKGKHPQLVEIDSEGKV-VWQLND 261 (276)
T ss_dssp EECTTSCEE----EEEECTTCTTGGGSCCCSEEEECTTSBE-EEEECC
T ss_pred eEcCCCCEE----EEeccCccccccccCCceEEEECCCCCE-EEEecC
Confidence 444444443 344 2 2358888889987 565544
No 106
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=28.02 E-value=3.2e+02 Score=24.28 Aligned_cols=212 Identities=12% Similarity=0.074 Sum_probs=106.8
Q ss_pred EEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEe-----cCCeEEEEEcCCcEEEeec
Q 015253 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTA-----GLNFTGFLTIRGHVHTCGS 242 (410)
Q Consensus 168 i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~-----G~~~s~~lt~~G~v~~wG~ 242 (410)
++....+.+++|+.|++|.+-...--..+..... ......+...++.+|+.+.. ...+.+++|++|.+.-.-.
T Consensus 49 ~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G--~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l 126 (307)
T 1zi0_A 49 VANTHDHILCFSSRGRVYSMKVYQLPEATRGARG--RPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVL 126 (307)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCC--EEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCC--eEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEH
Confidence 4556788899999999999865443222221111 11111122224556776654 2335677899998876643
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEEE--eCCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeecccc
Q 015253 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIA--AGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRR 320 (410)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~ia--~G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~ 320 (410)
.++-... ......-.+.+.+.++.+. .+.++.+++|++|+++-+-..+--.+|.... -+++-.+.
T Consensus 127 ~e~~~~~-------r~G~~~i~l~~~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~-----Gv~~i~L~- 193 (307)
T 1zi0_A 127 TEFNRLR-------TAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTT-----GVRGIRLG- 193 (307)
T ss_dssp GGGTTCC-------TTCEESSCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCC-----CEECCCCC-
T ss_pred HHhhccc-------cCCeEEEEECCCCEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCC-----CeEeEEeC-
Confidence 3321110 1121222222224565543 3667899999999999887655444433111 11221222
Q ss_pred CCccEEEEEec--CCeEEEEeCCCCEEEEecCCCCCCCCCCCCCccccEEecCCC--CCceeeeeeEEe--cCCcEEEEE
Q 015253 321 KGIHVVRVSAG--DEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLK--SHLAVQGLSVLA--EVCPTIVQE 394 (410)
Q Consensus 321 ~~~~i~~i~~G--~~hs~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~P~~v~~~~--~~~i~~~~~i~~--G~~~t~~l~ 394 (410)
.+..|+.+..- ....+++|++|.+--.-...+-.-+.+. .-..+..+. +..++. +.. ....-+++|
T Consensus 194 ~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~-----kG~~~~~~~~~~~~lv~---~~~v~~~~~l~~~t 265 (307)
T 1zi0_A 194 EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRAT-----KGVISIKVTERNGLVVG---AVQVDDCDQIMMIT 265 (307)
T ss_dssp TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTS-----CCEESSCCCTTTCSEEE---EEEECTTCEEEEEE
T ss_pred CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCC-----CCEEeeEecCCCCeEEE---EEEeCCCceEEEEc
Confidence 33467766543 2345667888765444332221111111 011111111 123443 222 455677888
Q ss_pred cCCCEEEe
Q 015253 395 DTRSCSDI 402 (410)
Q Consensus 395 ~~g~v~~w 402 (410)
++|.+...
T Consensus 266 ~~g~~ir~ 273 (307)
T 1zi0_A 266 DAGTLVRT 273 (307)
T ss_dssp SSCCEEEE
T ss_pred CCCcEEEE
Confidence 99888765
No 107
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=27.91 E-value=2.9e+02 Score=23.74 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=35.8
Q ss_pred CCEEEEEeCC--CeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEEEEecC-CeEEEEeCCCCEE
Q 015253 269 GSVVQIAAGP--SYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGD-EHVVALDSSGYVY 345 (410)
Q Consensus 269 ~~i~~ia~G~--~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~i~~G~-~hs~~lt~~G~vy 345 (410)
..|..|+... ...+.-..||.|..|-..... .+..+. ....|..+.... .+.++...+|.|.
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~--------------~~~~~~-~~~~v~~~~~~~~~~~~~~~~d~~i~ 280 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--------------HLYTLD-GGDIINALCFSPNRYWLCAATGPSIK 280 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTE--------------EEEEEE-CSSCEEEEEECSSSSEEEEEETTEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc--------------eeeeec-CCceEEeeecCCCCceeeccCCCEEE
Confidence 3577776543 344445678889988543321 111121 112455544432 3455566788898
Q ss_pred EEec
Q 015253 346 TWGK 349 (410)
Q Consensus 346 ~wG~ 349 (410)
.|-.
T Consensus 281 iwd~ 284 (340)
T 4aow_A 281 IWDL 284 (340)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8864
No 108
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=27.91 E-value=3.3e+02 Score=24.31 Aligned_cols=216 Identities=13% Similarity=0.072 Sum_probs=114.0
Q ss_pred EEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec-----CCeeEEEEcCCcEEEEeC
Q 015253 116 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS-----ENHAAFVLQSGQVFTCGD 189 (410)
Q Consensus 116 ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~h~~~lt~~G~vy~wG~ 189 (410)
++.+..+.+++ +.|++|..-...--..|...... .-...+.+....+|+.+... ..+.+++|++|.++-.-.
T Consensus 54 ~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G~--~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l 131 (312)
T 1suu_A 54 CVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQ--NISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFES 131 (312)
T ss_dssp EEETTCEEEEEETTSEEEEEEGGGSCC-------C--BGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCeEEEEEHHHCCCCCccCCCc--ChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEH
Confidence 44455667777 99999998654322112111110 01123445555678777654 345788899999998865
Q ss_pred CCCCcccCCCCCCceeccEEeccc-CCCceEEEE--ecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCC
Q 015253 190 NSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVT--AGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 266 (410)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~i~--~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 266 (410)
..+-.. . ........+ ++..++.+. .+..+.+++|++|.+.-+-..+.-..|... .-++.-.+.
T Consensus 132 ~~~~~~-r-------~~G~~~i~L~~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~-----~Gv~~i~L~ 198 (312)
T 1suu_A 132 TDFKAV-K-------SRGVIVIKLNDKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGT-----QGVCGMKLK 198 (312)
T ss_dssp GGGCC------------CEECBCCCTTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTB-----CCEECCCCC
T ss_pred HHhhcc-C-------CCcEEEEecCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCC-----CCeEeEEeC
Confidence 543110 0 011111112 234455443 356678889999999988765543333321 112222333
Q ss_pred CCCCEEEEEe--CCCeEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccc-cCCccEEEE--EecCCeEEEEeCC
Q 015253 267 EVGSVVQIAA--GPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFR-RKGIHVVRV--SAGDEHVVALDSS 341 (410)
Q Consensus 267 ~~~~i~~ia~--G~~h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~-~~~~~i~~i--~~G~~hs~~lt~~ 341 (410)
+.+.|+.+.. ...+.++++++|.+.-.-..++-..+.+..- +++..+. .....++.+ .......+++|++
T Consensus 199 ~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG-----v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~ 273 (312)
T 1suu_A 199 EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG-----YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKR 273 (312)
T ss_dssp TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCC-----EECSCTTCTTTCSEEEEEEECTTCEEEEEETT
T ss_pred CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCC-----EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCC
Confidence 3356776654 3557888999998777766665444443221 1111111 111233332 2355667778888
Q ss_pred CCEEEEecCC
Q 015253 342 GYVYTWGKGY 351 (410)
Q Consensus 342 G~vy~wG~n~ 351 (410)
|++.-.-.+.
T Consensus 274 g~~~r~~~~~ 283 (312)
T 1suu_A 274 SKALRTVAGK 283 (312)
T ss_dssp CEEEEEEGGG
T ss_pred CeEEEEEccc
Confidence 8776655443
No 109
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=26.84 E-value=3.6e+02 Score=24.51 Aligned_cols=143 Identities=6% Similarity=-0.027 Sum_probs=70.0
Q ss_pred CceEEEecCCeeEEE---ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC--CeeEEEEcCCcEEE
Q 015253 112 GNMQITTGRYHTLLI---SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE--NHAAFVLQSGQVFT 186 (410)
Q Consensus 112 ~i~~ia~G~~h~~~l---~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~--~h~~~lt~~G~vy~ 186 (410)
.|..++......+++ .||.|..|-.... + ....+.. ....|..|+... ...+.-..||.|..
T Consensus 110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-~-----------~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~D~~i~i 176 (410)
T 1vyh_C 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETG-D-----------FERTLKG-HTDSVQDISFDHSGKLLASCSADMTIKL 176 (410)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTC-C-----------CCEEECC-CSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-c-----------EEEEEec-cCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 466776655433333 7899999964321 1 0011111 112566666543 33344467888888
Q ss_pred EeCCCCCcccCCCCCCceeccEEecccC--CCceEEEEec--CCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceee
Q 015253 187 CGDNSSFCCGHRDTNRPIFRPRLVEALK--GVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSI 262 (410)
Q Consensus 187 wG~n~~gqlG~~~~~~~~~~p~~v~~~~--~~~i~~i~~G--~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v 262 (410)
|-....-. +..+. ...|..++.. ..+.+.-..|+.|..|-.... + ....+
T Consensus 177 wd~~~~~~---------------~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~-~----------~~~~~ 230 (410)
T 1vyh_C 177 WDFQGFEC---------------IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-Y----------CVKTF 230 (410)
T ss_dssp EETTSSCE---------------EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC-C----------EEEEE
T ss_pred EeCCCCce---------------eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-c----------EEEEE
Confidence 86533111 11111 1234555443 344555677899999954221 0 01111
Q ss_pred cCCCCCCCEEEEEeCC--CeEEEEECCCcEEEEeC
Q 015253 263 APLEEVGSVVQIAAGP--SYMLAVTGNGVVYSFGS 295 (410)
Q Consensus 263 ~~~~~~~~i~~ia~G~--~h~~~lt~~G~vy~wG~ 295 (410)
.... ..|..++... ...+.-..||.|..|=.
T Consensus 231 ~~h~--~~v~~~~~~~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 231 TGHR--EWVRMVRPNQDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp ECCS--SCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eCCC--ccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 1111 2455554432 33444567888888854
No 110
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=23.38 E-value=3.4e+02 Score=23.03 Aligned_cols=119 Identities=7% Similarity=-0.131 Sum_probs=59.8
Q ss_pred CceEEEecCCe-eEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC----CeeEEEEcCCcE
Q 015253 112 GNMQITTGRYH-TLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE----NHAAFVLQSGQV 184 (410)
Q Consensus 112 ~i~~ia~G~~h-~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~----~h~~~lt~~G~v 184 (410)
.|..++-.... .++. .||.|..|-...... . . .+..........|..++... ...+.-..||.|
T Consensus 13 ~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~------~--~-~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v 83 (351)
T 3f3f_A 13 LVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS------N--W-ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83 (351)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEECSSSC------C--E-EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC------c--c-eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeE
Confidence 35666654322 2333 789999996432110 0 0 11111111223687777643 445556789999
Q ss_pred EEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEecC----CeEEEEEcCCcEEEeecC
Q 015253 185 FTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGL----NFTGFLTIRGHVHTCGSN 243 (410)
Q Consensus 185 y~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~----~~s~~lt~~G~v~~wG~n 243 (410)
..|-.+....... .....+..........|..++... ...+..+.+|.|+.|=..
T Consensus 84 ~vwd~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 84 KLWEEDPDQEECS----GRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp EEEEECTTSCTTS----SCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred EEEecCCCccccc----ccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 9997654211000 001111111111234567776654 355566789999999543
No 111
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=22.80 E-value=4.1e+02 Score=23.77 Aligned_cols=154 Identities=10% Similarity=-0.002 Sum_probs=77.7
Q ss_pred EEecCCeeEEE----ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEec---CCeeEEEEcCCcEEEEe
Q 015253 116 ITTGRYHTLLI----SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSAS---ENHAAFVLQSGQVFTCG 188 (410)
Q Consensus 116 ia~G~~h~~~l----~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G---~~h~~~lt~~G~vy~wG 188 (410)
+++......++ .+|.|+.|-....+++... .+........|..++.. ....+.-..||.|..|-
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~---------~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKN---------VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCEECCTT---------CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCCCCCCC---------CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 44444444443 4789999976554433110 00011112267777764 34445556799999997
Q ss_pred CCCCCcccCCCCCCceecc-EEecccCCCceEEEEecCC---eEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecC
Q 015253 189 DNSSFCCGHRDTNRPIFRP-RLVEALKGVPCKQVTAGLN---FTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAP 264 (410)
Q Consensus 189 ~n~~gqlG~~~~~~~~~~p-~~v~~~~~~~i~~i~~G~~---~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~ 264 (410)
....+... ....| ..+.. ....|..++.... ..+.-..+|.|+.|-.... .....+..
T Consensus 111 ~~~~~~~~------~~~~~~~~~~~-h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~-----------~~~~~~~~ 172 (402)
T 2aq5_A 111 IPDGGLVL------PLREPVITLEG-HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG-----------AAVLTLGP 172 (402)
T ss_dssp CCTTCCSS------CBCSCSEEEEC-CSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT-----------EEEEEECT
T ss_pred ccCCCCcc------ccCCceEEecC-CCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC-----------CccEEEec
Confidence 65432111 00111 11111 2234666665443 3444567899999953321 01111210
Q ss_pred CCCCCCEEEEEeC--CCeEEEEECCCcEEEEeCC
Q 015253 265 LEEVGSVVQIAAG--PSYMLAVTGNGVVYSFGSG 296 (410)
Q Consensus 265 ~~~~~~i~~ia~G--~~h~~~lt~~G~vy~wG~n 296 (410)
......|..++.. ....+.-..+|.|+.|-..
T Consensus 173 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 206 (402)
T 2aq5_A 173 DVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206 (402)
T ss_dssp TTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT
T ss_pred CCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC
Confidence 1111457777664 3445556678999999643
No 112
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=22.79 E-value=4.4e+02 Score=24.06 Aligned_cols=70 Identities=7% Similarity=-0.078 Sum_probs=38.1
Q ss_pred ecCCCceEEEecC--CeeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCC-CCCEEEEEec---CCeeEEEE
Q 015253 108 ETSAGNMQITTGR--YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPS-AAHVVQVSAS---ENHAAFVL 179 (410)
Q Consensus 108 ~~~~~i~~ia~G~--~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~-~~~i~~i~~G---~~h~~~lt 179 (410)
+...+|..|+--. ...+|. .||.|..|-..... .+..+.+.. ...|..|+.. ....+.-.
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCS------------CCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence 3345677887643 345666 79999999432110 111222221 1256666643 23334445
Q ss_pred cCCcEEEEeC
Q 015253 180 QSGQVFTCGD 189 (410)
Q Consensus 180 ~~G~vy~wG~ 189 (410)
.||.|..|-.
T Consensus 185 ~D~~v~iwd~ 194 (435)
T 4e54_B 185 MEGTTRLQDF 194 (435)
T ss_dssp SSSCEEEEET
T ss_pred CCCEEEEeec
Confidence 6888988854
No 113
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=22.72 E-value=3.5e+02 Score=22.94 Aligned_cols=77 Identities=9% Similarity=-0.114 Sum_probs=41.9
Q ss_pred CCceEEEecC---CeeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCC----eeEEEEcC
Q 015253 111 AGNMQITTGR---YHTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN----HAAFVLQS 181 (410)
Q Consensus 111 ~~i~~ia~G~---~h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~----h~~~lt~~ 181 (410)
..|..++-.. ...++. .||.|..|-.......... . ...+..........|..++.... ..+.-+.+
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~---~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 133 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG---R-RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGND 133 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS---C-SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc---c-CcceeeeecccCCceeEEEEcCCCCCcEEEEecCC
Confidence 3477777643 344444 7899999976432111000 0 00111111122336887877643 45666789
Q ss_pred CcEEEEeCCC
Q 015253 182 GQVFTCGDNS 191 (410)
Q Consensus 182 G~vy~wG~n~ 191 (410)
|.|+.|-...
T Consensus 134 g~v~iwd~~~ 143 (351)
T 3f3f_A 134 GILRLYDALE 143 (351)
T ss_dssp CEEEEEECSS
T ss_pred CcEEEecCCC
Confidence 9999997544
No 114
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=22.37 E-value=4.4e+02 Score=23.89 Aligned_cols=65 Identities=14% Similarity=-0.044 Sum_probs=35.5
Q ss_pred ceEEEecCC-eeEEE--ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecCCeeEEEEcCCcEEEEeC
Q 015253 113 NMQITTGRY-HTLLI--SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGD 189 (410)
Q Consensus 113 i~~ia~G~~-h~~~l--~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~~h~~~lt~~G~vy~wG~ 189 (410)
|..|+-... ..++. .||.|..|-....- ...........+..++......+.-..++.++.|-.
T Consensus 150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-------------~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~ 216 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-------------RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDV 216 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTE-------------EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEET
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEcCCCc-------------EEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeee
Confidence 666665432 33344 78888888643211 111111112356667666555555677888888754
Q ss_pred C
Q 015253 190 N 190 (410)
Q Consensus 190 n 190 (410)
.
T Consensus 217 ~ 217 (420)
T 4gga_A 217 R 217 (420)
T ss_dssp T
T ss_pred c
Confidence 3
No 115
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A
Probab=21.69 E-value=2.8e+02 Score=21.33 Aligned_cols=104 Identities=16% Similarity=0.085 Sum_probs=52.7
Q ss_pred EEEEEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEE-ecCCeEEEEEcCCcEEEeecC
Q 015253 165 VVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVT-AGLNFTGFLTIRGHVHTCGSN 243 (410)
Q Consensus 165 i~~i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~-~G~~~s~~lt~~G~v~~wG~n 243 (410)
+.--.|...+.+-+..||+|-...... ..........+.. + ++.|- .-..+-+++..+|+||+--.
T Consensus 8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~~--------~~~s~l~~~~v~~--G--~V~I~g~~sg~yL~m~~~G~v~Gs~~- 74 (132)
T 3q7x_A 8 VLLRSTETGQFLRINPDGTVDGTRDRS--------DPGIQFQISPEGN--G--EVLLRSTETGQFLRINPDGTVDGTRD- 74 (132)
T ss_dssp EEEEETTTCCEEEECTTSBEEEECCTT--------CGGGCEEEEEEET--T--EEEEEETTTCCEEEECTTSBEEEECC-
T ss_pred heeeeccCcEEEEECCCCcEEeecCCC--------CCCcEEEEEeccc--C--EEEEEEEcccEEEEECCCCCEeeccC-
Confidence 334456666777788899998764321 0011222222221 2 23332 23445788899999996421
Q ss_pred CCCccCCCCCCCCCCceeecCCCCCCCEEEE-EeCCCeEEEEECCCcEEE
Q 015253 244 THGQLGHGDTLDRPTPKSIAPLEEVGSVVQI-AAGPSYMLAVTGNGVVYS 292 (410)
Q Consensus 244 ~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i-a~G~~h~~~lt~~G~vy~ 292 (410)
..+.....++.... ...+.| ..-....++++.+|++|.
T Consensus 75 ---------~s~ec~flE~~~~~--~g~v~ikg~~sg~YLamnk~G~lyg 113 (132)
T 3q7x_A 75 ---------RSDPGIQFQISPEG--NGEVLLRSTETGQFLRINPDGTVDG 113 (132)
T ss_dssp ----------CCGGGCEEEEEEE--TTEEEEEETTTCCEEEECTTSBEEE
T ss_pred ---------CCCCceeEEEEeec--CcEEEEEeccCCeEEEECCCCcCcC
Confidence 11111222221111 122233 222334889999999996
No 116
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=21.60 E-value=4.5e+02 Score=23.74 Aligned_cols=161 Identities=9% Similarity=0.038 Sum_probs=75.0
Q ss_pred CCCceEEEecCC-eeEEE--ECCcEEEEeCC--CCCccCCCCCCCceeceeeecCC---CCCCEEEEEec----CCeeEE
Q 015253 110 SAGNMQITTGRY-HTLLI--SNSSVFSCGSS--LCGVLGHGPETTQCVSFTRINFP---SAAHVVQVSAS----ENHAAF 177 (410)
Q Consensus 110 ~~~i~~ia~G~~-h~~~l--~~g~vy~wG~n--~~gqlG~~~~~~~~~~p~~v~~~---~~~~i~~i~~G----~~h~~~ 177 (410)
...|..|+.-.. ..++. .||.|..|-.. ..+++-. .........+.+. ....+..+..- ....+.
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 345777776542 33333 78999999542 1111100 0000011111111 22345555522 345556
Q ss_pred EEcCCcEEEEeCCCCCcccCCCCCCceeccEEeccc-CCCceEEEEec--CCeEEEEEcCCcEEEeecCCCCccCCCCCC
Q 015253 178 VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQVTAG--LNFTGFLTIRGHVHTCGSNTHGQLGHGDTL 254 (410)
Q Consensus 178 lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~i~~G--~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~ 254 (410)
-+.+|.|+.|-....- ....+... ....|..++.. ....+.-+.+|.|..|-... +
T Consensus 188 ~~~d~~i~iwd~~~~~------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~-~-------- 246 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLE------------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF-N-------- 246 (437)
T ss_dssp EETTSEEEEEETTTCC------------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT-T--------
T ss_pred EeCCCeEEEEeCCCCe------------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC-c--------
Confidence 6788999999654311 01111110 12346666653 33344457788899994332 1
Q ss_pred CCCCceeecCCCCCCCEEEEEeCCC------eEEEEECCCcEEEEeCCC
Q 015253 255 DRPTPKSIAPLEEVGSVVQIAAGPS------YMLAVTGNGVVYSFGSGS 297 (410)
Q Consensus 255 ~~~~p~~v~~~~~~~~i~~ia~G~~------h~~~lt~~G~vy~wG~n~ 297 (410)
.+...-.+.....|..++.... ..+.-..||.|..|-...
T Consensus 247 ---~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 247 ---VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp ---EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred ---cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 1111111111135666643321 334445678899996643
No 117
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=21.13 E-value=4.5e+02 Score=23.56 Aligned_cols=223 Identities=12% Similarity=0.021 Sum_probs=114.0
Q ss_pred EEecCCeeEEE-ECCcEEEEeCCCCCccCCCCCCCceeceeeecCCCCCCEEEEEecC-----CeeEEEEcCCcEEEEeC
Q 015253 116 ITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASE-----NHAAFVLQSGQVFTCGD 189 (410)
Q Consensus 116 ia~G~~h~~~l-~~g~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G~-----~h~~~lt~~G~vy~wG~ 189 (410)
++.+..+.+++ +.|++|..-...--..+...... .-...+++....+|+.+..-. ...+++|++|.+--.-.
T Consensus 46 ~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~--~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l 123 (323)
T 1wp5_A 46 EMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ--HIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTEL 123 (323)
T ss_dssp EEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE--EGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEG
T ss_pred EECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc--ChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEH
Confidence 44556666777 99999998765432222211111 011223445555777765432 35788899998877654
Q ss_pred CCCCcccCCCCCCceeccEEeccc-CCCceEE--EEecCCeEEEEEcCCcEEEeecCCCCccCCCCCCCCCCceeecCCC
Q 015253 190 NSSFCCGHRDTNRPIFRPRLVEAL-KGVPCKQ--VTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLE 266 (410)
Q Consensus 190 n~~gqlG~~~~~~~~~~p~~v~~~-~~~~i~~--i~~G~~~s~~lt~~G~v~~wG~n~~gqlG~~~~~~~~~p~~v~~~~ 266 (410)
..+-.... ......-.+ ++..++. +..+..+.+++|++|+++-+-.++.-..|.. ...+..-.+.
T Consensus 124 ~e~~~~~r-------~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~-----a~GV~~i~L~ 191 (323)
T 1wp5_A 124 KHYKAQRY-------SKPLTGINLKNDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVR-----AAGVKGMNLK 191 (323)
T ss_dssp GGGCCSCC-------SSCEECSCCCTTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSS-----CCCEECCCCC
T ss_pred HHhhhccc-------cCceEEEEeCCCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCC-----CcCEEEEEeC
Confidence 43311100 011111111 2233333 3346778899999999999876654333331 2233333444
Q ss_pred CCCCEEEEEeC--CC-eEEEEECCCcEEEEeCCCCcccCCCCCCCccccEEeeccccCCccEEE--EEecCCeEEEEeCC
Q 015253 267 EVGSVVQIAAG--PS-YMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVR--VSAGDEHVVALDSS 341 (410)
Q Consensus 267 ~~~~i~~ia~G--~~-h~~~lt~~G~vy~wG~n~~gqLG~g~~~~~~~p~~i~~~~~~~~~i~~--i~~G~~hs~~lt~~ 341 (410)
+.+.|+.+..= .. ..+.+|++|...-.-..++-.-+.+.. -...+. .+...+..+.. +..+.+.-+++|++
T Consensus 192 ~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k-Gv~~~~---~~~~~~~~l~~~~~v~~~~~i~~it~~ 267 (323)
T 1wp5_A 192 EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR-GVVILR---ELKANPHRISGFVVAQDSDTIYLQTEK 267 (323)
T ss_dssp TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC-CEECSC---CCSSSCCCEEEEEEECTTCEEEEEETT
T ss_pred CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC-CEECee---ecCCCCceEEEEEEeCCCCeEEEEeCC
Confidence 44667776431 22 577778887644433333322222111 001111 12112223432 23456788899999
Q ss_pred CCEEEEecCCCCCCC
Q 015253 342 GYVYTWGKGYCGALG 356 (410)
Q Consensus 342 G~vy~wG~n~~gqLG 356 (410)
|++.-.--+..-..|
T Consensus 268 g~~ir~~~~~i~~~~ 282 (323)
T 1wp5_A 268 SFIETIKVGDIRFSD 282 (323)
T ss_dssp SCEEEEEGGGSCBCC
T ss_pred CeEEEEEhhhcCccC
Confidence 999877655443333
No 118
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=20.55 E-value=5e+02 Score=23.85 Aligned_cols=126 Identities=17% Similarity=0.123 Sum_probs=69.0
Q ss_pred EEecCCeeEEEEcCCcEEEEeCCCCCcccCCCCCCceeccEEecccCCCceEEEEec-----CCeEEEEEcCCcEEEeec
Q 015253 168 VSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAG-----LNFTGFLTIRGHVHTCGS 242 (410)
Q Consensus 168 i~~G~~h~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~~p~~v~~~~~~~i~~i~~G-----~~~s~~lt~~G~v~~wG~ 242 (410)
++.+..+.+++|+.|++|.+-...--..|..... ......+..-.+.+|+.+..- ..+.+++|++|.+.-.-.
T Consensus 53 ~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a~G--~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l 130 (370)
T 3l6v_A 53 LVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNARG--RPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPL 130 (370)
T ss_dssp EECTTCEEEEEETTSEEEEEEGGGSCBCCTTSCC--EEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEG
T ss_pred EecCCCEEEEEeCCCeEEEEEHHHCcCCCcccCC--cCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEH
Confidence 3445566888999999998864432222221111 111111222246677777654 236788899998876654
Q ss_pred CCCCccCCCCCCCCCCceeecCCCCCCCEEEE--EeCCCeEEEEECCCcEEEEeCCCCcccC
Q 015253 243 NTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQI--AAGPSYMLAVTGNGVVYSFGSGSNFCLG 302 (410)
Q Consensus 243 n~~gqlG~~~~~~~~~p~~v~~~~~~~~i~~i--a~G~~h~~~lt~~G~vy~wG~n~~gqLG 302 (410)
.++-... ..-...-.+.+...++.+ ..+..+.+++|++|++.-+-..+--.+|
T Consensus 131 ~e~~~~~-------~~G~~ai~L~~~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~~v~~~g 185 (370)
T 3l6v_A 131 SEFAFRL-------ARGKIAINLDEGDALVGVALTDGDRDVLLFASNGKTVRFGESTVRSMG 185 (370)
T ss_dssp GGGCSCC-------TTCEESSCCCTTCCEEEEEEECSCCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred HHhhccc-------CCceEEEEeCCCCEEEEEEEeCCCceEEEEeCCCeEEEEEccccCccC
Confidence 4432111 011112222222445543 3466789999999999887554443333
Done!