BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015254
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 113 VSGGGTFDGQGAVA-----PSECEKDDYCKKRPIVSN----LSFNAITNSVVQDVTSLNS 163
+ G GT DGQG V S E K + + N + N N + +V+ +NS
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINS 172
Query: 164 KQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGT 223
FH+ FT + T+ P + NTDGI S +TI S I TGDD ++I
Sbjct: 173 PNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYK 232
Query: 224 QQMEINKI-----DCGPGHGISVGS--LGKYQNEQPVVGIRVRECNISNTSNGVRIKTWP 276
+ E I D G GHG+S+GS +G Y + V + ++ T+NG+RIK+
Sbjct: 233 GRAETRNISILHNDFGTGHGMSIGSETMGVYN-------VTVDDLKMNGTTNGLRIKS-D 284
Query: 277 ASYPGTASDLHFEDIKMNNVSNPILLDQVY 306
S G + + + ++ M NV+ PI++D VY
Sbjct: 285 KSAAGVVNGVRYSNVVMKNVAKPIVIDTVY 314
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 119/235 (50%), Gaps = 17/235 (7%)
Query: 148 NAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEE----SLNTDGIHVGRSSGV 203
+++TNSV+ + +NS +V G+ T + +T+ + NTD +G S+ V
Sbjct: 110 HSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYV 169
Query: 204 TITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNI 263
TI+ + + DDC+++ G + + + C GHG+S+GS+G +++ V + + I
Sbjct: 170 TISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVGG-RSDNTVKNVTFVDSTI 227
Query: 264 SNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSN-PILLDQVYCPHNQCNAKVPSRVKL 322
N+ NGVRIKT G+ SD+ ++DI + +++ I++ Q Y ++ + V +
Sbjct: 228 INSDNGVRIKT-NIDTTGSVSDVTYKDITLTSIAKYGIVVQQNY---GDTSSTPTTGVPI 283
Query: 323 DRVSFKNIRGT-SATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNI 376
N+ G+ ++ I ++C G C D+S++ G S+CTN+
Sbjct: 284 TDFVLDNVHGSVVSSGTNILISCGSG-SCSDWTWTDVSVS----GGKTSSKCTNV 333
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 102/195 (52%), Gaps = 14/195 (7%)
Query: 191 NTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250
NTD VG S+GV I+ + + DDC++I GT + C GHG+S+GS+G +++
Sbjct: 153 NTDAFDVGSSTGVYISGANVKNQDDCLAINSGT-NITFTGGTCSGGHGLSIGSVGG-RSD 210
Query: 251 QPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSN-PILLDQVYCPH 309
V + + I N+ NGVRIKT + G+ S + + I ++N++ I+++Q Y
Sbjct: 211 NTVKTVTISNSKIVNSDNGVRIKT-VSGATGSVSGVTYSGITLSNIAKYGIVIEQDY--E 267
Query: 310 NQCNAKVPSR-VKLDRVSFKNIRGTSATA-VAIKLACSGGVPCEGVELADISLTYTGPEG 367
N P+ V + ++ I G+ A++ + + C+ G C + + +S+T G
Sbjct: 268 NGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASG-ACSNWKWSGVSVT----GG 322
Query: 368 PIKSECTNIQPKTSG 382
++C+NI P SG
Sbjct: 323 KKSTKCSNI-PSGSG 336
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 3/174 (1%)
Query: 191 NTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250
NTDG + S VT+ ++ + DDC+++ GT + ++ + C GHG+S+GS+G +++
Sbjct: 165 NTDGFDISSSDHVTLDNNHVYNQDDCVAVTSGT-NIVVSNMYCSGGHGLSIGSVGG-KSD 222
Query: 251 QPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHN 310
V G++ + N+ NG RIK+ + GT +++ +++I + N+S + Q +
Sbjct: 223 NVVDGVQFLSSQVVNSQNGCRIKS-NSGATGTINNVTYQNIALTNISTYGVDVQQDYLNG 281
Query: 311 QCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTG 364
K + VK+ + F + GT A++ G C G + ++T G
Sbjct: 282 GPTGKPTNGVKISNIKFIKVTGTVASSAQDWFILCGDGSCSGFTFSGNAITGGG 335
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 9/194 (4%)
Query: 173 AKNFTFQRVTVTAPEESL----NTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEI 228
A + TF VT+ + NTD VG S GV I + DDC+++ G + +
Sbjct: 156 ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG-ENIWF 214
Query: 229 NKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHF 288
C GHG+S+GS+G N V + + +SN+ N VRIKT + G+ S++ +
Sbjct: 215 TGGTCIGGHGLSIGSVGDRSN-NVVKNVTIEHSTVSNSENAVRIKTISGA-TGSVSEITY 272
Query: 289 EDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGT-SATAVAIKLACSGG 347
+I M+ +S+ ++ Q + K + V + V +++ G+ + A I L C G
Sbjct: 273 SNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVTIQDVKLESVTGSVDSGATEIYLLCGSG 332
Query: 348 VPCEGVELADISLT 361
C D+ +T
Sbjct: 333 -SCSDWTWDDVKVT 345
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 13/189 (6%)
Query: 191 NTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250
NTDG + S+GV I+ + + DDCI+I G + + C GHG+S+GS+G +++
Sbjct: 152 NTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCSGGHGLSIGSVGG-RDD 209
Query: 251 QPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSN-PILLDQVYCPH 309
V + + + +SN++NGVRIKT G S++ + +I+++ +++ I+++Q Y
Sbjct: 210 NTVKNVTISDSTVSNSANGVRIKT-IYKETGDVSEITYSNIQLSGITDYGIVIEQDY--E 266
Query: 310 NQCNAKVPSR-VKLDRVSFKNIRGT-SATAVAIKLACSGGVPCEGVELADISLTYTGPEG 367
N PS + + V+ + GT A + + C G C + + L+ G
Sbjct: 267 NGSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDG-SCSDWTWSGVDLS----GG 321
Query: 368 PIKSECTNI 376
+C N+
Sbjct: 322 KTSDKCENV 330
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 138/342 (40%), Gaps = 45/342 (13%)
Query: 31 AKQNADISQALRDAWKEACAATTPSKVLIPQGTYQL-SPVTMEGPCKAAIELQ------- 82
A + D+ A+ AW A + V IP G Y L + VT+ G AI+L
Sbjct: 30 ADNSTDVGPAITSAWA---ACKSGGLVYIPSGNYALNTWVTLTGGSATAIQLDGIIYRTG 86
Query: 83 -VKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPI 141
G + A+TD + E + + G G G V +E Y +
Sbjct: 87 TASGNMIAVTDTTD------------FELFSSTSKGAVQGFGYVYHAE---GTYGARI-- 129
Query: 142 VSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSS 201
L +T+ V D+ +++ FH + + + + E DGI V S
Sbjct: 130 ---LRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGNEG-GLDGIDV-WGS 184
Query: 202 GVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVREC 261
+ + D ++ D+C+++ + + I C G ++GSLG + V I R
Sbjct: 185 NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVYRNV 241
Query: 262 NISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVK 321
+++ IK+ S GT S++ E+ + + + +D + + A V+
Sbjct: 242 YTWSSNQMYMIKSNGGS--GTVSNVLLENFIGHGNAYSLDIDGYW---SSMTAVAGDGVQ 296
Query: 322 LDRVSFKNIRGTSATAVA---IKLACSGGVPCEGVELADISL 360
L+ ++ KN +GT A I++ CS PC + L DI++
Sbjct: 297 LNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 338
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 191 NTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQ-QMEINKIDCGPGHGISVGSLGKYQN 249
NTDG V ++ VTI + + DDCI+I DG + E N+ C GHGIS+GS+ ++
Sbjct: 151 NTDGFDV-SANNVTIQNCIVKNQDDCIAINDGNNIRFENNQ--CSGGHGISIGSIATGKH 207
Query: 250 EQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSN-PILLDQVY 306
VV ++ ++ + GVRIK + + S + ++ ++ ++ +L+ Q Y
Sbjct: 208 VSNVV---IKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGVLISQSY 262
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 100/253 (39%), Gaps = 64/253 (25%)
Query: 23 DVDVTKHGAKQNA--DISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIE 80
+V++ GA+ + D S++ + A +E + ++++P+G + P+ + K+ IE
Sbjct: 27 EVNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEGVFLTGPIHL----KSNIE 81
Query: 81 LQVKGTLKALTDPA-------------NVKDAGSWVSFNKIEHLTVSGGGTFDGQG---A 124
L VKGT+K + DP + + V E++ ++G G DG
Sbjct: 82 LHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEH 141
Query: 125 VAPSECEKDDYCKK---------------------------------RPIVSNLSFNAIT 151
P + +KD K+ RP S + F
Sbjct: 142 WWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRP--SFVQFYRCR 199
Query: 152 NSVVQDVTSLNSKQFHINVIGAKNFTFQRVTV--TAPEESLNTDGIHVGRSSGVTITDSK 209
N +V+ V +NS + I+ + ++N + + + T P N DGI + I +
Sbjct: 200 NVLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTGP----NNDGIDPESCKYMLIEKCR 255
Query: 210 IGTGDDCISIGDG 222
TGDD + I G
Sbjct: 256 FDTGDDSVVIKSG 268
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 191 NTDGIHVGRSSGVTITDSKIGTGDDCISIGDGT 223
N DGI G S V + ++ TGDDCI+ GT
Sbjct: 379 NGDGIEFGNSQNVMVFNNFFDTGDDCINFAAGT 411
>pdb|1CU1|A Chain A, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
pdb|1CU1|B Chain B, Crystal Structure Of An Enzyme Complex From Hepatitis C
Virus
Length = 645
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 344 CSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPP------PC------IA 391
C GV C V S T GP+GPI TN+ G PP PC +
Sbjct: 61 CVNGV-CWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLY 119
Query: 392 SATPSGSAIPGRRR 405
T IP RRR
Sbjct: 120 LVTRHADVIPVRRR 133
>pdb|4A92|A Chain A, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor.
pdb|4A92|B Chain B, Full-Length Hcv Ns3-4a Protease-Helicase In Complex With A
Macrocyclic Protease Inhibitor
Length = 666
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 344 CSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPP------PC------IA 391
C GV C V S T GP+GPI TN+ G PP PC +
Sbjct: 82 CVNGV-CWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLY 140
Query: 392 SATPSGSAIPGRRR 405
T IP RRR
Sbjct: 141 LVTRHADVIPVRRR 154
>pdb|4B6E|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6E|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B6F|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 683
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 344 CSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPP------PC------IA 391
C GV C V S T GP+GPI TN+ G PP PC +
Sbjct: 82 CVNGV-CWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLY 140
Query: 392 SATPSGSAIPGRRR 405
T IP RRR
Sbjct: 141 LVTRHADVIPVRRR 154
>pdb|4B75|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B75|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 344 CSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPP------PC------IA 391
C GV C V S T GP+GPI TN+ G PP PC +
Sbjct: 82 CVNGV-CWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLY 140
Query: 392 SATPSGSAIPGRRR 405
T IP RRR
Sbjct: 141 LVTRHADVIPVRRR 154
>pdb|3O8B|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8B|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8C|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8D|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|A Chain A, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|3O8R|B Chain B, Visualizing Atp-Dependent Rna Translocation By The Ns3
Helicase From Hcv
pdb|4B71|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B71|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B73|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B74|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|A Chain A, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
pdb|4B76|B Chain B, Discovery Of An Allosteric Mechanism For The Regulation Of
Hcv Ns3 Protein Function
Length = 666
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 344 CSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPP------PC------IA 391
C GV C V S T GP+GPI TN+ G PP PC +
Sbjct: 82 CVNGV-CWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLY 140
Query: 392 SATPSGSAIPGRRR 405
T IP RRR
Sbjct: 141 LVTRHADVIPVRRR 154
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,250,833
Number of Sequences: 62578
Number of extensions: 526725
Number of successful extensions: 842
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 30
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)