Query 015254
Match_columns 410
No_of_seqs 197 out of 1707
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:33:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 2.5E-78 5.4E-83 596.1 46.1 386 1-391 1-393 (394)
2 PLN02793 Probable polygalactur 100.0 9.7E-76 2.1E-80 586.5 48.3 370 21-394 50-427 (443)
3 PLN02218 polygalacturonase ADP 100.0 2.3E-75 5E-80 581.2 45.5 364 16-390 60-431 (431)
4 PLN03003 Probable polygalactur 100.0 6E-76 1.3E-80 583.3 41.0 384 1-394 1-393 (456)
5 PLN03010 polygalacturonase 100.0 5.4E-75 1.2E-79 573.4 47.1 357 18-391 41-404 (409)
6 PLN02188 polygalacturonase/gly 100.0 4.5E-75 9.7E-80 575.4 43.3 367 20-390 33-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 2.7E-57 5.9E-62 442.0 31.8 322 49-379 1-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 6.3E-40 1.4E-44 330.1 26.2 272 19-303 78-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 1E-22 2.2E-27 199.4 23.2 244 21-295 35-337 (455)
10 PLN02793 Probable polygalactur 99.9 2E-20 4.3E-25 188.1 30.1 219 77-335 143-397 (443)
11 PLN02188 polygalacturonase/gly 99.9 6.6E-20 1.4E-24 182.3 29.5 221 77-335 122-377 (404)
12 PLN02218 polygalacturonase ADP 99.9 5.6E-20 1.2E-24 184.0 28.0 238 55-334 132-410 (431)
13 PLN03003 Probable polygalactur 99.9 4.4E-19 9.4E-24 177.2 28.8 225 69-335 107-360 (456)
14 PLN02155 polygalacturonase 99.9 5.4E-19 1.2E-23 175.0 28.7 219 77-335 115-366 (394)
15 PF03718 Glyco_hydro_49: Glyco 99.8 5.3E-19 1.2E-23 174.7 26.6 276 55-363 233-554 (582)
16 PF12708 Pectate_lyase_3: Pect 99.8 1.7E-19 3.7E-24 166.6 21.0 206 23-270 1-224 (225)
17 PF00295 Glyco_hydro_28: Glyco 99.8 5.4E-19 1.2E-23 172.7 24.6 218 77-334 60-310 (326)
18 PLN03010 polygalacturonase 99.8 8.6E-18 1.9E-22 166.9 29.0 215 77-335 139-377 (409)
19 TIGR03805 beta_helix_1 paralle 99.7 1.5E-14 3.2E-19 140.4 22.0 197 41-296 1-203 (314)
20 COG5434 PGU1 Endopygalactoruna 99.4 1.4E-11 3.1E-16 125.3 16.2 153 165-335 238-398 (542)
21 PRK10123 wcaM putative colanic 99.3 1.2E-10 2.6E-15 107.3 14.1 201 20-267 31-259 (464)
22 TIGR03805 beta_helix_1 paralle 99.0 2.8E-07 6.1E-12 89.6 24.1 154 144-304 79-251 (314)
23 PF12541 DUF3737: Protein of u 98.8 7.2E-08 1.6E-12 88.5 12.2 125 146-299 93-228 (277)
24 PF13229 Beta_helix: Right han 98.7 3.3E-07 7.1E-12 79.2 11.8 140 144-303 2-145 (158)
25 COG3866 PelB Pectate lyase [Ca 98.5 4.6E-05 1E-09 71.5 21.1 139 79-266 77-229 (345)
26 COG3420 NosD Nitrous oxidase a 98.5 6E-05 1.3E-09 71.7 21.7 120 100-234 69-191 (408)
27 PF13229 Beta_helix: Right han 98.5 2.7E-06 6E-11 73.3 12.1 116 144-272 25-144 (158)
28 TIGR03808 RR_plus_rpt_1 twin-a 98.4 2.8E-05 6E-10 77.5 19.2 146 144-303 108-291 (455)
29 PF07602 DUF1565: Protein of u 98.4 2.9E-05 6.3E-10 72.2 17.6 111 35-185 12-133 (246)
30 PF05048 NosD: Periplasmic cop 98.3 3E-05 6.5E-10 72.4 16.0 113 144-272 37-151 (236)
31 smart00656 Amb_all Amb_all dom 98.3 5.1E-05 1.1E-09 68.5 16.3 96 170-266 36-144 (190)
32 PF12541 DUF3737: Protein of u 98.3 1.6E-05 3.4E-10 73.3 12.8 96 148-270 134-229 (277)
33 PF14592 Chondroitinas_B: Chon 98.2 0.00024 5.2E-09 70.7 21.4 33 37-72 3-35 (425)
34 PF05048 NosD: Periplasmic cop 98.2 4.9E-05 1.1E-09 70.9 15.6 135 144-302 15-151 (236)
35 COG3866 PelB Pectate lyase [Ca 98.2 0.00012 2.5E-09 68.8 17.4 124 145-297 95-230 (345)
36 PF03718 Glyco_hydro_49: Glyco 98.1 9E-05 2E-09 74.8 15.4 172 168-361 323-513 (582)
37 PF12708 Pectate_lyase_3: Pect 98.1 0.0013 2.9E-08 60.2 21.9 123 153-300 94-224 (225)
38 PLN02480 Probable pectinestera 98.0 0.0035 7.6E-08 61.4 23.6 131 148-295 129-276 (343)
39 smart00656 Amb_all Amb_all dom 98.0 0.0011 2.5E-08 59.7 18.8 118 144-271 33-172 (190)
40 PF00544 Pec_lyase_C: Pectate 97.8 0.00027 5.8E-09 64.3 12.3 99 167-266 38-158 (200)
41 PLN02176 putative pectinestera 97.7 0.014 3.1E-07 57.0 23.2 210 23-295 40-270 (340)
42 PLN02497 probable pectinestera 97.6 0.02 4.2E-07 55.9 21.7 131 148-295 112-263 (331)
43 PLN02634 probable pectinestera 97.6 0.031 6.8E-07 54.9 22.8 131 149-295 147-290 (359)
44 PRK10531 acyl-CoA thioesterase 97.5 0.02 4.4E-07 57.3 21.2 47 37-85 93-141 (422)
45 PLN02773 pectinesterase 97.4 0.034 7.4E-07 54.0 21.0 135 146-295 97-239 (317)
46 PLN02665 pectinesterase family 97.4 0.053 1.1E-06 53.7 22.2 137 145-295 148-297 (366)
47 PLN02682 pectinesterase family 97.4 0.061 1.3E-06 53.2 22.4 135 146-296 158-305 (369)
48 PLN02708 Probable pectinestera 97.4 0.014 3.1E-07 60.9 18.9 47 37-85 252-300 (553)
49 PLN02170 probable pectinestera 97.3 0.071 1.5E-06 55.1 22.0 205 37-295 236-451 (529)
50 PLN02995 Probable pectinestera 97.3 0.057 1.2E-06 56.3 21.4 214 37-299 234-464 (539)
51 PLN02916 pectinesterase family 97.2 0.082 1.8E-06 54.3 21.8 141 146-296 272-426 (502)
52 PLN02314 pectinesterase 97.2 0.075 1.6E-06 56.1 21.7 138 148-296 362-509 (586)
53 PF01095 Pectinesterase: Pecti 97.2 0.018 3.8E-07 55.7 15.6 205 38-297 12-237 (298)
54 PLN02506 putative pectinestera 97.2 0.065 1.4E-06 55.8 20.6 135 146-295 314-458 (537)
55 PLN02201 probable pectinestera 97.2 0.12 2.6E-06 53.6 22.3 209 37-296 217-442 (520)
56 PLN02468 putative pectinestera 97.1 0.088 1.9E-06 55.2 21.5 139 148-296 342-490 (565)
57 PLN02745 Putative pectinestera 97.1 0.089 1.9E-06 55.5 21.4 138 148-296 369-521 (596)
58 PLN02713 Probable pectinestera 97.1 0.12 2.6E-06 54.3 21.7 138 148-296 337-489 (566)
59 PLN02313 Pectinesterase/pectin 97.0 0.13 2.9E-06 54.1 21.5 209 37-295 286-510 (587)
60 PLN02484 probable pectinestera 97.0 0.25 5.5E-06 52.1 23.5 211 37-296 283-509 (587)
61 PLN02197 pectinesterase 97.0 0.13 2.8E-06 54.1 21.2 140 148-296 361-514 (588)
62 PLN02304 probable pectinestera 97.0 0.24 5.2E-06 49.1 21.9 78 148-234 159-246 (379)
63 PLN02416 probable pectinestera 97.0 0.12 2.7E-06 53.8 20.9 138 148-295 314-465 (541)
64 PLN03043 Probable pectinestera 97.0 0.21 4.6E-06 52.1 22.6 140 147-296 309-462 (538)
65 PLN02671 pectinesterase 97.0 0.14 3.1E-06 50.4 20.3 133 146-295 149-294 (359)
66 PLN02432 putative pectinestera 97.0 0.3 6.4E-06 47.0 21.9 131 148-295 91-229 (293)
67 PLN02488 probable pectinestera 97.0 0.24 5.3E-06 50.8 22.3 138 148-295 281-432 (509)
68 PF01696 Adeno_E1B_55K: Adenov 97.0 0.11 2.3E-06 51.4 18.9 153 25-236 45-200 (386)
69 PLN02217 probable pectinestera 96.9 0.13 2.8E-06 54.8 20.7 139 148-296 334-486 (670)
70 PLN02301 pectinesterase/pectin 96.9 0.2 4.3E-06 52.4 21.4 210 37-296 247-472 (548)
71 PF00544 Pec_lyase_C: Pectate 96.9 0.013 2.8E-07 53.3 11.3 118 145-272 39-187 (200)
72 PLN02933 Probable pectinestera 96.9 0.36 7.8E-06 50.1 22.7 210 37-296 229-454 (530)
73 PLN02990 Probable pectinestera 96.8 0.32 6.9E-06 51.2 22.3 139 148-296 344-496 (572)
74 PLN02682 pectinesterase family 96.7 0.62 1.3E-05 46.2 22.5 112 172-296 161-280 (369)
75 COG3420 NosD Nitrous oxidase a 95.6 0.21 4.5E-06 48.2 11.9 21 53-73 33-57 (408)
76 COG4677 PemB Pectin methyleste 95.4 0.53 1.2E-05 45.2 14.0 49 35-85 91-141 (405)
77 PF03211 Pectate_lyase: Pectat 94.3 2 4.2E-05 39.3 14.1 53 176-234 63-116 (215)
78 PLN02480 Probable pectinestera 93.1 5.2 0.00011 39.5 15.9 111 172-296 130-252 (343)
79 PF01696 Adeno_E1B_55K: Adenov 92.9 11 0.00024 37.6 18.2 86 170-270 117-204 (386)
80 PF12218 End_N_terminal: N ter 91.9 0.26 5.7E-06 35.2 3.7 37 31-71 1-40 (67)
81 PLN02773 pectinesterase 91.6 7.6 0.00017 37.9 14.9 112 172-297 100-213 (317)
82 TIGR03804 para_beta_helix para 91.5 0.33 7.3E-06 32.3 3.9 39 168-211 2-40 (44)
83 PF14592 Chondroitinas_B: Chon 90.9 5.4 0.00012 40.3 13.3 121 150-274 66-222 (425)
84 TIGR03804 para_beta_helix para 90.9 0.34 7.4E-06 32.3 3.5 40 194-234 1-40 (44)
85 PF03211 Pectate_lyase: Pectat 90.5 14 0.0003 33.9 15.9 133 150-290 60-194 (215)
86 PF01095 Pectinesterase: Pecti 89.6 3.9 8.5E-05 39.6 10.9 113 172-296 85-202 (298)
87 PLN02916 pectinesterase family 89.4 9.1 0.0002 39.7 13.8 113 172-297 275-393 (502)
88 PLN02170 probable pectinestera 89.2 9 0.0002 39.9 13.7 114 171-297 310-428 (529)
89 PLN02665 pectinesterase family 88.9 12 0.00026 37.2 13.9 113 172-297 152-273 (366)
90 PRK10531 acyl-CoA thioesterase 88.3 23 0.0005 35.9 15.5 56 200-265 237-302 (422)
91 PLN02506 putative pectinestera 88.1 7.7 0.00017 40.6 12.5 113 171-296 316-434 (537)
92 PF08480 Disaggr_assoc: Disagg 88.0 18 0.0004 32.1 12.7 77 225-303 3-83 (198)
93 PLN02713 Probable pectinestera 87.8 10 0.00022 40.1 13.2 113 172-297 338-456 (566)
94 PLN02217 probable pectinestera 87.4 7.2 0.00016 41.9 11.9 112 173-297 336-453 (670)
95 PLN02698 Probable pectinestera 87.4 9.6 0.00021 39.6 12.6 77 149-234 268-349 (497)
96 PLN02201 probable pectinestera 87.2 16 0.00034 38.2 14.0 112 172-296 291-408 (520)
97 PLN02488 probable pectinestera 87.1 19 0.00041 37.3 14.3 112 173-297 283-400 (509)
98 PLN02708 Probable pectinestera 86.9 45 0.00097 35.2 17.6 139 147-295 326-486 (553)
99 PF07602 DUF1565: Protein of u 86.8 28 0.0006 32.7 14.2 104 168-303 91-195 (246)
100 PLN03043 Probable pectinestera 86.7 14 0.00031 38.7 13.6 113 172-297 311-429 (538)
101 PLN02432 putative pectinestera 86.7 15 0.00032 35.5 12.7 110 172-295 92-204 (293)
102 PLN02634 probable pectinestera 86.5 14 0.00031 36.6 12.7 110 173-296 148-266 (359)
103 PLN02745 Putative pectinestera 86.3 16 0.00034 38.9 13.7 113 172-297 370-488 (596)
104 PF09251 PhageP22-tail: Salmon 86.2 6.6 0.00014 39.3 10.0 68 200-274 263-354 (549)
105 PLN02416 probable pectinestera 86.2 13 0.00027 39.2 12.8 111 173-296 316-432 (541)
106 PLN02468 putative pectinestera 85.9 13 0.00029 39.2 12.9 112 173-297 344-461 (565)
107 PLN02304 probable pectinestera 85.9 19 0.00042 35.9 13.3 111 173-295 161-286 (379)
108 PLN02933 Probable pectinestera 85.8 17 0.00036 38.1 13.3 112 172-296 303-420 (530)
109 PLN02301 pectinesterase/pectin 85.7 15 0.00033 38.6 13.1 113 172-297 321-439 (548)
110 PLN02990 Probable pectinestera 85.6 17 0.00036 38.5 13.4 112 173-297 346-463 (572)
111 PLN02671 pectinesterase 85.5 16 0.00034 36.3 12.4 110 173-295 153-269 (359)
112 PLN02995 Probable pectinestera 85.1 14 0.00031 38.8 12.6 111 173-296 311-427 (539)
113 PLN02484 probable pectinestera 84.9 16 0.00035 38.8 13.0 113 172-297 358-476 (587)
114 PLN02314 pectinesterase 84.5 17 0.00037 38.6 13.0 113 172-297 363-481 (586)
115 PLN02176 putative pectinestera 84.5 21 0.00046 35.1 12.8 111 172-296 120-246 (340)
116 PLN02197 pectinesterase 84.4 21 0.00046 37.9 13.5 113 172-297 362-481 (588)
117 PLN02497 probable pectinestera 83.5 22 0.00047 34.9 12.3 113 172-296 113-239 (331)
118 PF09251 PhageP22-tail: Salmon 83.0 45 0.00097 33.6 14.1 68 223-293 263-347 (549)
119 PLN02313 Pectinesterase/pectin 83.0 19 0.00042 38.2 12.6 113 172-297 360-478 (587)
120 PRK10123 wcaM putative colanic 81.9 6.8 0.00015 37.2 7.8 43 223-267 300-345 (464)
121 PLN02698 Probable pectinestera 78.3 79 0.0017 32.9 15.0 113 172-297 268-386 (497)
122 PF02402 Lysis_col: Lysis prot 75.9 1.6 3.4E-05 29.0 1.2 23 1-23 1-23 (46)
123 PF08480 Disaggr_assoc: Disagg 61.4 94 0.002 27.8 9.5 14 223-236 63-76 (198)
124 PRK13792 lysozyme inhibitor; P 58.6 15 0.00032 30.8 3.9 22 1-22 1-22 (127)
125 PF07437 YfaZ: YfaZ precursor; 54.8 9.8 0.00021 33.9 2.5 25 1-25 1-25 (180)
126 smart00710 PbH1 Parallel beta- 48.5 21 0.00045 19.6 2.5 18 255-272 3-21 (26)
127 PF07172 GRP: Glycine rich pro 33.3 28 0.0006 27.6 1.7 9 1-9 1-9 (95)
128 smart00722 CASH Domain present 31.5 1.6E+02 0.0034 24.0 6.3 67 148-217 73-143 (146)
129 PF11777 DUF3316: Protein of u 31.0 81 0.0017 25.7 4.1 13 1-13 1-13 (114)
130 PRK09752 adhesin; Provisional 30.5 9.3E+02 0.02 28.1 16.2 61 174-234 121-190 (1250)
131 PF10162 G8: G8 domain; Inter 29.7 1.9E+02 0.0042 23.8 6.3 54 53-119 11-64 (125)
132 PRK15058 cytochrome b562; Prov 29.5 17 0.00036 30.5 -0.2 19 29-47 36-54 (128)
133 PRK15240 resistance to complem 28.5 52 0.0011 29.4 2.8 17 1-17 1-17 (185)
134 PRK10081 entericidin B membran 28.1 60 0.0013 22.2 2.3 6 39-44 37-42 (48)
135 PF03032 Brevenin: Brevenin/es 27.8 31 0.00068 23.4 0.9 11 1-11 3-13 (46)
136 KOG1777 Putative Zn-finger pro 26.2 79 0.0017 32.1 3.8 29 193-221 419-447 (625)
137 PF05342 Peptidase_M26_N: M26 25.2 63 0.0014 30.3 2.8 12 60-71 154-166 (250)
138 PF11466 Doppel: Prion-like pr 25.0 65 0.0014 19.5 1.8 16 6-21 11-26 (30)
139 COG5510 Predicted small secret 24.1 70 0.0015 21.3 2.0 8 1-8 2-9 (44)
140 PF10614 CsgF: Type VIII secre 24.0 44 0.00095 28.5 1.4 21 1-21 1-21 (142)
141 PF12099 DUF3575: Protein of u 24.0 77 0.0017 28.4 3.0 15 1-15 1-15 (189)
142 PF12276 DUF3617: Protein of u 22.9 51 0.0011 28.4 1.6 15 1-15 1-15 (162)
143 PRK09810 entericidin A; Provis 22.3 67 0.0015 21.2 1.7 8 1-8 2-9 (41)
144 PRK09980 ompL outer membrane p 21.6 39 0.00085 31.4 0.7 28 1-28 1-28 (230)
145 PF10836 DUF2574: Protein of u 21.3 89 0.0019 24.1 2.4 51 1-51 1-54 (93)
146 PF07157 DNA_circ_N: DNA circu 21.3 1.5E+02 0.0032 23.4 3.8 26 36-61 60-85 (93)
147 PRK10159 outer membrane phosph 21.0 65 0.0014 31.8 2.2 31 1-31 1-37 (351)
148 PF07986 TBCC: Tubulin binding 20.1 4.8E+02 0.01 21.2 7.1 13 144-156 41-53 (120)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=2.5e-78 Score=596.10 Aligned_cols=386 Identities=40% Similarity=0.713 Sum_probs=345.9
Q ss_pred Ccchh----hHHHHHHHHHhhhccceeeEeecCCCcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCceEEeeeeEecCC
Q 015254 1 MAKSN----ILALFLSLLMLSAAAALDVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGP 74 (410)
Q Consensus 1 m~~~~----~~~~~~~~~~~~~~~~~~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G~Y~i~~l~l~~~ 74 (410)
|.|+- ||+.+|.+...+..+++++||+||||+|| +|+|+|||+||++||+..+|++|+||+|+|++++|.|+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gp 80 (394)
T PLN02155 1 MTKSAITFPLLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGP 80 (394)
T ss_pred CccceeehhHHHHHHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEccc
Confidence 55654 45555556666677799999999999999 9999999999987898888899999999999999999999
Q ss_pred CCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEE
Q 015254 75 CKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSV 154 (410)
Q Consensus 75 ~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~ 154 (410)
|||+++|+++|+++++.++..|.....|+.+.+++++.|+| |+|||+|+.||...........+|+ ++.|.+|++++
T Consensus 81 cksnv~l~l~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~--~i~~~~~~nv~ 157 (394)
T PLN02155 81 CKSKITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVR--SISFNSAKDVI 157 (394)
T ss_pred CCCCceEEEeeEEECccccccccccceeEEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCCccc--ceeEEEeeeEE
Confidence 99999999999999988888786556799999999999999 9999999999963332233345678 89999999999
Q ss_pred EEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEc
Q 015254 155 VQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCG 234 (410)
Q Consensus 155 I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~ 234 (410)
|++++++|||.|++++..|+|++|++++|.++.+++|+||||+.+|++|+|+||+|.+|||||+++++++||+|+||+|.
T Consensus 158 i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~ 237 (394)
T PLN02155 158 ISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACG 237 (394)
T ss_pred EECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEE
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecCCccEEEEeeeCCCCC-CC
Q 015254 235 PGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQ-CN 313 (410)
Q Consensus 235 ~~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~-~~ 313 (410)
.+||++|||+|++...+.|+||+|+||+|.++.+|++||+|.+.++|.|+||+|+||+|+++.+||.|++.|++... |+
T Consensus 238 ~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~ 317 (394)
T PLN02155 238 PGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCP 317 (394)
T ss_pred CCceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCc
Confidence 99999999998765578999999999999999999999999765579999999999999999999999999986543 43
Q ss_pred CCCCCceeEEeEEEEeEEEeecCcceEEEecCCCCceecEEEEeEEEEecCCCCCCceeeeeccccCCCcccCCCCCC
Q 015254 314 AKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCIA 391 (410)
Q Consensus 314 ~~~~~~~~i~nVtf~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~~ 391 (410)
...+.+.|+||+|+||+++.....++.+.|++..||+||+|+||++..+++. ++.+.|+||+|...++++|++|.+
T Consensus 318 -~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~-~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 318 -NEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGT-PATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred -CCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCC-ccCcEEeccEeEEcccCCcccccC
Confidence 3355689999999999999987788999999999999999999999988654 567999999999999889989964
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=9.7e-76 Score=586.46 Aligned_cols=370 Identities=42% Similarity=0.736 Sum_probs=336.1
Q ss_pred ceeeEeecCCCcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCc-eEEeeeeEecCCCCccEEEEEeeEEEeeCCccCcc
Q 015254 21 ALDVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQG-TYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVK 97 (410)
Q Consensus 21 ~~~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G-~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~ 97 (410)
++++||+||||+|| +|||+|||+||++||++.+|++|+||+| +|++++|.|.|+||++++|+++|+|+++.++.+|+
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w~ 129 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVWK 129 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHcc
Confidence 45899999999999 9999999999987898878899999999 59999999999999999999999999999999998
Q ss_pred CC--CccEEEEeeeeEEEEeCeEecCCCCCCCccc-c--cCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCcceEEEeC
Q 015254 98 DA--GSWVSFNKIEHLTVSGGGTFDGQGAVAPSEC-E--KDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIG 172 (410)
Q Consensus 98 ~~--~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~-~--~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~i~~~~ 172 (410)
.. +.||.+.+.+|++|+|.|+|||+|+.||+.. . .......||+ ++.|.+|+|++|++++++|+|.|++++..
T Consensus 130 ~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~--~i~f~~~~nv~v~gitl~nSp~~~i~~~~ 207 (443)
T PLN02793 130 GLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPT--AITFHKCKDLRVENLNVIDSQQMHIAFTN 207 (443)
T ss_pred CCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCce--EEEEEeeccEEEECeEEEcCCCeEEEEEc
Confidence 53 5799999999999999999999999999532 1 1122345899 99999999999999999999999999999
Q ss_pred eeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCCC
Q 015254 173 AKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQP 252 (410)
Q Consensus 173 ~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~~ 252 (410)
|+|++|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||+|.+...+.
T Consensus 208 ~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~ 287 (443)
T PLN02793 208 CRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSE 287 (443)
T ss_pred cCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCc
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999988766788
Q ss_pred EEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEE
Q 015254 253 VVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRG 332 (410)
Q Consensus 253 v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~ 332 (410)
|+||+|+||++.++.+|++||+|+++ +|.|+||+|+||+|+++.+||.|+++|++....++..++.+.|+||+|+||++
T Consensus 288 V~nV~v~n~~~~~t~~GirIKt~~g~-~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~G 366 (443)
T PLN02793 288 VRDITVDGAFLSNTDNGVRIKTWQGG-SGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKG 366 (443)
T ss_pred EEEEEEEccEEeCCCceEEEEEeCCC-CEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEE
Confidence 99999999999999999999999987 59999999999999999999999999977443222446678999999999999
Q ss_pred eecCcceEEEecCCCCceecEEEEeEEEEecCCCCCCceeeeeccccCCCcccCCCCCCCCC
Q 015254 333 TSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCIASAT 394 (410)
Q Consensus 333 ~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~~~~~ 394 (410)
+.....++.+.|++..||+||+|+||+++...+. .....|.|++|...+.+.|++|++...
T Consensus 367 t~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~~~~~p~~C~~~~~ 427 (443)
T PLN02793 367 TSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSSGQVYPPPCFSDST 427 (443)
T ss_pred EEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeECCeEcCCccccCCC
Confidence 9876678999999999999999999999987665 556889999999999999999986643
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2.3e-75 Score=581.16 Aligned_cols=364 Identities=40% Similarity=0.741 Sum_probs=331.5
Q ss_pred hhhccceeeEeecCCCcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCc-eEEeeeeEecCCCCccEEEEEeeEEEeeCC
Q 015254 16 LSAAAALDVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQG-TYQLSPVTMEGPCKAAIELQVKGTLKALTD 92 (410)
Q Consensus 16 ~~~~~~~~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G-~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~ 92 (410)
..++..+++||+||||+|| +|||+|||+||++||++.++++|+||+| +|++++|.|+|+||++++|+++|+|+++++
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d 139 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQK 139 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCC
Confidence 4444688999999999999 8999999999988899888899999999 699999999999999999999999999999
Q ss_pred ccCccCCCccEEEEeeeeEEEEeC--eEecCCCCCCCcccc-cC--CCCCCCCeeeeEEEEeeccEEEEeEEEeccCcce
Q 015254 93 PANVKDAGSWVSFNKIEHLTVSGG--GTFDGQGAVAPSECE-KD--DYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFH 167 (410)
Q Consensus 93 ~~~~~~~~~~i~~~~~~nv~I~G~--G~idG~g~~~~~~~~-~~--~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~ 167 (410)
..+|+....||.+.+++||+|+|. |+|||+|+.||+... .. .....||+ ++.|.+|+|++|++++++|+|.|+
T Consensus 140 ~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~--~i~f~~~~nv~I~gitl~nSp~w~ 217 (431)
T PLN02218 140 RSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPT--ALTFYNSKSLIVKNLRVRNAQQIQ 217 (431)
T ss_pred hhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCE--EEEEEccccEEEeCeEEEcCCCEE
Confidence 998976678999999999999996 999999999996321 11 22346899 999999999999999999999999
Q ss_pred EEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCcc
Q 015254 168 INVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKY 247 (410)
Q Consensus 168 i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~ 247 (410)
+++..|+|++|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|..+||++|||+|.+
T Consensus 218 i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~ 297 (431)
T PLN02218 218 ISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDD 297 (431)
T ss_pred EEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCC
Confidence 99999999999999999998889999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeEEeEEE
Q 015254 248 QNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSF 327 (410)
Q Consensus 248 ~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf 327 (410)
...+.|+||+|+||++.++.+|+|||+|+++ +|.|+||+|+||+|+++.+||.|++.|++...|. .+++.+.|+||+|
T Consensus 298 ~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg-~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~-~~~s~v~I~nI~~ 375 (431)
T PLN02218 298 NSKAFVSGVTVDGAKLSGTDNGVRIKTYQGG-SGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCT-SQQSAVQVKNVVY 375 (431)
T ss_pred CCCceEEEEEEEccEEecCCcceEEeecCCC-CeEEEEEEEEeEEEEcccccEEEEeeccCCCCCC-CCCCCeEEEEEEE
Confidence 5568999999999999999999999999987 5999999999999999999999999998766554 3456789999999
Q ss_pred EeEEEeecCcceEEEecCCCCceecEEEEeEEEEecCCCCCCceeeeeccccCCCcccCCCCC
Q 015254 328 KNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCI 390 (410)
Q Consensus 328 ~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~ 390 (410)
+||+++.+...++.+.|++..||+||+|+||++... ...|+||++...++++| .|.
T Consensus 376 ~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 376 RNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred EeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEEEcccCCC-CCC
Confidence 999999876678999999999999999999999853 24799999999997666 884
No 4
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=6e-76 Score=583.27 Aligned_cols=384 Identities=35% Similarity=0.619 Sum_probs=337.6
Q ss_pred CcchhhHHHHHHHHHhhhccceeeEeecCCCcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCce-EEeeeeEecCCCCc
Q 015254 1 MAKSNILALFLSLLMLSAAAALDVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQGT-YQLSPVTMEGPCKA 77 (410)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G~-Y~i~~l~l~~~~~s 77 (410)
|||+...+-|-|+++..-.++.++||++|||+|| +|||+|||+||++||+..+|++|+||+|+ |++++|.|+|+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~ 80 (456)
T PLN03003 1 MKKKTWFLNFSLFFLQIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKS 80 (456)
T ss_pred CCceeEEEeeeeeeeeeeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccC
Confidence 7775533222222223335788999999999999 99999999999988987788999999995 89999999999876
Q ss_pred c-EEEEEeeEEEeeCCccCccC-CCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEE
Q 015254 78 A-IELQVKGTLKALTDPANVKD-AGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVV 155 (410)
Q Consensus 78 ~-v~l~~~G~i~~~~~~~~~~~-~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I 155 (410)
. ++++++|+++++.. ..|.+ ...||.+.++++++|+|.|+|||+|+.||+. ...||+ ++.|.+|+|++|
T Consensus 81 ~~~~~~i~G~i~ap~~-~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~------~~~rP~--~l~f~~~~nv~I 151 (456)
T PLN03003 81 TPVFVQMLGKLVAPSK-GNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEH------KGSRPT--ALKFRSCNNLRL 151 (456)
T ss_pred cceeeccCceEecCcc-ccccCCCcceEEEEcccceEEeccceEeCCchhhhhc------ccCCce--EEEEEecCCcEE
Confidence 4 78888999998654 45754 2679999999999999999999999999963 135899 999999999999
Q ss_pred EeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcC
Q 015254 156 QDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGP 235 (410)
Q Consensus 156 ~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~ 235 (410)
++++++|+|.|++++..|++++|++++|.++.+++|+||||+.+|+||+|+||.|.+|||||++|++++||+|+||+|..
T Consensus 152 ~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~ 231 (456)
T PLN03003 152 SGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGP 231 (456)
T ss_pred eCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEEC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecCCccEEEEeeeCCCCC--CC
Q 015254 236 GHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQ--CN 313 (410)
Q Consensus 236 ~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~--~~ 313 (410)
+|||+|||+|.++..+.|+||+|+||++.++.+|++||+|+|+ +|.|+||+|+||+|+++.+||.|++.|++... ++
T Consensus 232 GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg-~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~ 310 (456)
T PLN03003 232 GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGG-SGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAK 310 (456)
T ss_pred CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCC-CeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcc
Confidence 9999999998776668899999999999999999999999987 59999999999999999999999999975432 11
Q ss_pred CCCCCceeEEeEEEEeEEEeecCcceEEEecCCCCceecEEEEeEEEEecC-C-CCCCceeeeeccccCCCcccCCCCCC
Q 015254 314 AKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTG-P-EGPIKSECTNIQPKTSGKMNPPPCIA 391 (410)
Q Consensus 314 ~~~~~~~~i~nVtf~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~-~-~~~~~~~c~n~~~~~~~~~~~~~c~~ 391 (410)
...++.+.|+||+|+||+++...+.++.+.|++..||+||+|+||.++.+. + +.++.+.|.||+|...++++|++|++
T Consensus 311 ~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~ 390 (456)
T PLN03003 311 DRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLE 390 (456)
T ss_pred cCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccc
Confidence 234567899999999999998877889999999999999999999998763 2 22467999999999999888889997
Q ss_pred CCC
Q 015254 392 SAT 394 (410)
Q Consensus 392 ~~~ 394 (410)
.+.
T Consensus 391 ~~~ 393 (456)
T PLN03003 391 LST 393 (456)
T ss_pred cCC
Confidence 643
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=5.4e-75 Score=573.44 Aligned_cols=357 Identities=36% Similarity=0.655 Sum_probs=328.3
Q ss_pred hccceeeEeecCCCcCC--chhHHHHHHHHHHHhhcCC-CcEEEEcCc-eEEeeeeEecCCCC-ccEEEEEeeEEEeeCC
Q 015254 18 AAAALDVDVTKHGAKQN--ADISQALRDAWKEACAATT-PSKVLIPQG-TYQLSPVTMEGPCK-AAIELQVKGTLKALTD 92 (410)
Q Consensus 18 ~~~~~~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~-g~~v~~P~G-~Y~i~~l~l~~~~~-s~v~l~~~G~i~~~~~ 92 (410)
+..+.++||+||||+|| +|||+|||+||++||+.++ +++|+||+| +|++++|.|++||+ ++++|+++|+|+++.+
T Consensus 41 ~~~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d 120 (409)
T PLN03010 41 LVNGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSN 120 (409)
T ss_pred cCCCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCC
Confidence 34678999999999999 8999999999987886432 379999999 79999999999886 5799999999999999
Q ss_pred ccCccC--CCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCcceEEE
Q 015254 93 PANVKD--AGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINV 170 (410)
Q Consensus 93 ~~~~~~--~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~i~~ 170 (410)
..+|+. ...|+.+.+++|++|+|.|+|||+|+.||+ ++.|.+|+|++|++++++|+|.|++++
T Consensus 121 ~~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~---------------~l~~~~~~nv~v~gitl~nsp~~~i~i 185 (409)
T PLN03010 121 IVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE---------------ALHISKCDNLTINGITSIDSPKNHISI 185 (409)
T ss_pred hhhccCCCCcceEEEecccccEEeeceEEeCCCccccc---------------eEEEEeecCeEEeeeEEEcCCceEEEE
Confidence 999964 257899999999999999999999999995 689999999999999999999999999
Q ss_pred eCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 171 IGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 171 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..|++++|++++|.++..++|+||||+.+|++|+|+||+|.++||||++|+++.++.|+++.|..+||++|||+|..+..
T Consensus 186 ~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~ 265 (409)
T PLN03010 186 KTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGAN 265 (409)
T ss_pred eccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCC
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999876666
Q ss_pred CCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeE
Q 015254 251 QPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNI 330 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI 330 (410)
..|+||+|+||+|.++.+|++||+++++ +|.|+||+|+||+|+++++||.|++.|++....++.+++++.|+||+|+||
T Consensus 266 ~~V~nV~v~n~~i~~t~~GirIKt~~G~-~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni 344 (409)
T PLN03010 266 AKVSDVHVTHCTFNQTTNGARIKTWQGG-QGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGF 344 (409)
T ss_pred CeeEEEEEEeeEEeCCCcceEEEEecCC-CEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEee
Confidence 7899999999999999999999999987 599999999999999999999999999875443334578899999999999
Q ss_pred EEeecCcceEEEecCCCCceecEEEEeEEEEecCCCCCCceeeeeccccCCCcccCCCCCC
Q 015254 331 RGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCIA 391 (410)
Q Consensus 331 ~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~~ 391 (410)
+++...+.++.|.|++..||+||+|+||+++.+++. ++...|+|+++...++++|++|+.
T Consensus 345 ~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~-~~~~~C~nv~g~~~~~~~~~~C~~ 404 (409)
T PLN03010 345 RGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGE-KPKVECQNVEGESSDTDLMRDCFK 404 (409)
T ss_pred EEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCC-ccceEeeCccccccCCCCCCcccc
Confidence 999887789999999999999999999999988755 567899999999999999999985
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=4.5e-75 Score=575.44 Aligned_cols=367 Identities=50% Similarity=0.872 Sum_probs=330.6
Q ss_pred cceeeEeecCCCcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCcc
Q 015254 20 AALDVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVK 97 (410)
Q Consensus 20 ~~~~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~ 97 (410)
++.++||+||||+|| +|||+|||+||++||++.+|++|+||+|+|++++|.|+|+|++...|.+ +|+++.+.++|+
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~~y~ 110 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTF--TLKAATDLSRYG 110 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCcceeEEE--EEEcCCCHHHCC
Confidence 357999999999999 9999999999988898888899999999999999999999875444444 889999999998
Q ss_pred CCCccEEEEeeeeEEEEeCeEecCCCCCCCcccc--cCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCcceEEEeCeee
Q 015254 98 DAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECE--KDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKN 175 (410)
Q Consensus 98 ~~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~--~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~n 175 (410)
....|+.+..++|++|+|.|+|||+|+.||+... .......||+ ++.|.+|+|++|++++++|+|.|++++..|++
T Consensus 111 ~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~--~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~ 188 (404)
T PLN02188 111 SGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPT--SVKFVNMNNTVVRGITSVNSKFFHIALVECRN 188 (404)
T ss_pred CccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCce--EEEEEeeeeEEEeCeEEEcCCCeEEEEEcccc
Confidence 6667999998999999999999999999996321 1223456899 99999999999999999999999999999999
Q ss_pred EEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCCCEEE
Q 015254 176 FTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVG 255 (410)
Q Consensus 176 v~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~~v~n 255 (410)
++|++++|.++.+++|+||||+.+|++|+|+||+|.++||||++|++++||+|+|+.|..+||++|||+|++.+.+.|+|
T Consensus 189 v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~n 268 (404)
T PLN02188 189 FKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTG 268 (404)
T ss_pred EEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEE
Confidence 99999999999888999999999999999999999999999999999999999999999999999999987766788999
Q ss_pred EEEEceEEecCCeeEEEEecCCC-CCcceeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEee
Q 015254 256 IRVRECNISNTSNGVRIKTWPAS-YPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTS 334 (410)
Q Consensus 256 v~i~n~~~~~~~~gi~iks~~g~-~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~~ 334 (410)
|+|+||++.++.+|++||+|.+. .+|.|+||+|+||+|+++.+||.|++.|++...|.+..++.+.|+||+|+||+++.
T Consensus 269 V~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~ 348 (404)
T PLN02188 269 LVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTS 348 (404)
T ss_pred EEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEe
Confidence 99999999999999999999864 24899999999999999999999999998765554334556899999999999999
Q ss_pred cCcceEEEecCCCCceecEEEEeEEEEecCCCCCCceeeeeccccCCCcccCCCCC
Q 015254 335 ATAVAIKLACSGGVPCEGVELADISLTYTGPEGPIKSECTNIQPKTSGKMNPPPCI 390 (410)
Q Consensus 335 ~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~~~~~~c~n~~~~~~~~~~~~~c~ 390 (410)
....++.+.|++..||+||+|+||+++.+++..+..+.|+||++...++++|++|+
T Consensus 349 ~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 349 SSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred cCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 76778999999999999999999999987654355799999999999999999995
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=2.7e-57 Score=441.98 Aligned_cols=322 Identities=34% Similarity=0.636 Sum_probs=277.0
Q ss_pred hhcCCCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEeCeEecCCCCCCCc
Q 015254 49 CAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPS 128 (410)
Q Consensus 49 ~~~~~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~g~~~~~ 128 (410)
|++.++++|++|+|+|+++++.|++++.++++++++|++.++.....|+. ..||.+.+++|+.|+|.|+|||+|+.||+
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~~ 79 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWWD 79 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECETTCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTCS
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhhc
Confidence 45556689999999999999988865557899999999998755555654 78999999999999999999999999996
Q ss_pred cccc-CCCCCCCCeeeeEEEEeeccEEEEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEe
Q 015254 129 ECEK-DDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITD 207 (410)
Q Consensus 129 ~~~~-~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n 207 (410)
.... ......||+ ++.|.+|++++|++++++++|.|++++..|+|++|++++|.++...+|+|||++.+|++|+|+|
T Consensus 80 ~~~~~~~~~~~rp~--~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n 157 (326)
T PF00295_consen 80 GSGDANNNGQRRPR--LIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIEN 157 (326)
T ss_dssp SCTTHCCSSSSSSE--SEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEES
T ss_pred cccccccccccccc--eeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEE
Confidence 3321 234567999 9999999999999999999999999999999999999999998877999999999999999999
Q ss_pred eEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEE
Q 015254 208 SKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLH 287 (410)
Q Consensus 208 ~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~ 287 (410)
|++.++||||++|++..||+|+||+|..+||++|||++..+....|+||+|+||++.++.+|++||+++++ +|.|+||+
T Consensus 158 ~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~-~G~v~nI~ 236 (326)
T PF00295_consen 158 CFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGG-GGYVSNIT 236 (326)
T ss_dssp EEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTT-SEEEEEEE
T ss_pred eecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEeccc-ceEEeceE
Confidence 99999999999999888999999999999999999997543335699999999999999999999999866 59999999
Q ss_pred EEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEeecCcceEEEecCCCCceecEEEEeEEEEecCCCC
Q 015254 288 FEDIKMNNVSNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLTYTGPEG 367 (410)
Q Consensus 288 ~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~~~~~~~ 367 (410)
|+||+++++.+||.|++.|.+...+. .+++.+.|+||+|+||+++.....++.+.|.+..||+||+|+||+++. +
T Consensus 237 f~ni~~~~v~~pi~i~~~y~~~~~~~-~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g--- 311 (326)
T PF00295_consen 237 FENITMENVKYPIFIDQDYRDGGPCG-KPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G--- 311 (326)
T ss_dssp EEEEEEEEESEEEEEEEEECTTEESS-CSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S---
T ss_pred EEEEEecCCceEEEEEeccccccccC-cccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C---
Confidence 99999999999999999998744333 234567999999999999998767899999999999999999999998 3
Q ss_pred CCceeeeecccc
Q 015254 368 PIKSECTNIQPK 379 (410)
Q Consensus 368 ~~~~~c~n~~~~ 379 (410)
...+.|+|+...
T Consensus 312 ~~~~~c~nv~~~ 323 (326)
T PF00295_consen 312 KKPAQCKNVPSG 323 (326)
T ss_dssp BSESEEBSCCTT
T ss_pred CcCeEEECCCCC
Confidence 456899998764
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.3e-40 Score=330.06 Aligned_cols=272 Identities=30% Similarity=0.480 Sum_probs=231.7
Q ss_pred ccceeeEeecCCCcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCceEEeeeeEecCCCCccEEEEEe-e-EEEeeCCcc
Q 015254 19 AAALDVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVK-G-TLKALTDPA 94 (410)
Q Consensus 19 ~~~~~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~-G-~i~~~~~~~ 94 (410)
++.+.++|.+|||+|| +|+++|||+||+ +|++.+|++|+||+|+|+.++|.|+ |+++|+++ | +|+.+.++.
T Consensus 78 ~~~t~~sv~~~ga~gDG~t~~~~aiq~AI~-~ca~a~Gg~V~lPaGtylsg~l~LK----S~~~L~l~egatl~~~~~p~ 152 (542)
T COG5434 78 ATDTAFSVSDDGAVGDGATDNTAAIQAAID-ACASAGGGTVLLPAGTYLSGPLFLK----SNVTLHLAEGATLLASSNPK 152 (542)
T ss_pred cccceeeeccccccccCCccCHHHHHHHHH-hhhhhcCceEEECCceeEeeeEEEe----cccEEEecCCceeeCCCChh
Confidence 4567999999999999 999999999985 6877788999999999999999999 99999995 6 898888888
Q ss_pred CccC--------C----------C-------------ccEEEEeeeeEE-EEeCeEecCCC----CCCCcccc--c-CCC
Q 015254 95 NVKD--------A----------G-------------SWVSFNKIEHLT-VSGGGTFDGQG----AVAPSECE--K-DDY 135 (410)
Q Consensus 95 ~~~~--------~----------~-------------~~i~~~~~~nv~-I~G~G~idG~g----~~~~~~~~--~-~~~ 135 (410)
+|+. . . ..+.....+|.. |.|.|+++|++ ..||.... . ...
T Consensus 153 ~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i~ 232 (542)
T COG5434 153 DYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIG 232 (542)
T ss_pred hccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhccc
Confidence 8872 0 1 122222335666 88888999864 22664222 0 111
Q ss_pred CC-CCCeeeeEEEEeeccEEEEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCC
Q 015254 136 CK-KRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGD 214 (410)
Q Consensus 136 ~~-~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gd 214 (410)
.. .||. ++.+..|+||++++++|.+++.|.+|+..|+|++++|++|.+.... |+||+++.+|+|++|++|+|.++|
T Consensus 233 ~~~~rp~--~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgD 309 (542)
T COG5434 233 GKGVRPR--TVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGD 309 (542)
T ss_pred ccCcCCc--eEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCC
Confidence 11 4888 9999999999999999999999999999999999999999998765 999999999999999999999999
Q ss_pred ceEEecCC-----------ceeEEEEeEEEcCCce-EEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcc
Q 015254 215 DCISIGDG-----------TQQMEINKIDCGPGHG-ISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGT 282 (410)
Q Consensus 215 D~i~i~s~-----------~~nv~I~n~~~~~~~G-i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~ 282 (410)
|||++|++ ++|++|+||++..+|| +.+||+ +.+.|+||++|||.|.++..|||||+..+. +|.
T Consensus 310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~~-gG~ 384 (542)
T COG5434 310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDGR-GGG 384 (542)
T ss_pred ceEEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeeccc-cee
Confidence 99999996 5899999999999996 889998 689999999999999999999999999887 599
Q ss_pred eeeEEEEeEEEecCCccEEEE
Q 015254 283 ASDLHFEDIKMNNVSNPILLD 303 (410)
Q Consensus 283 v~nI~~~ni~~~~~~~~i~i~ 303 (410)
++||+|+++++.++..+..|.
T Consensus 385 v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 385 VRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred EEEEEEecccccCcccceeee
Confidence 999999999999986444443
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.91 E-value=1e-22 Score=199.37 Aligned_cols=244 Identities=17% Similarity=0.238 Sum_probs=163.6
Q ss_pred ceeeEeecCCCcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCceEEeeeeEecCCCCccEEEEEe-eEEEeeCCccCcc
Q 015254 21 ALDVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVK-GTLKALTDPANVK 97 (410)
Q Consensus 21 ~~~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~-G~i~~~~~~~~~~ 97 (410)
.+.+++++|||++| +|+|+|||+||++ |+. ++++|.+|||+|+.++|.|+ ++++|.++ |.....-+.
T Consensus 35 ~r~~dv~~fGa~~dG~td~T~ALQaAIda-Aa~-gG~tV~Lp~G~Y~~G~L~L~----spltL~G~~gAt~~vIdG---- 104 (455)
T TIGR03808 35 TLGRDATQYGVRPNSPDDQTRALQRAIDE-AAR-AQTPLALPPGVYRTGPLRLP----SGAQLIGVRGATRLVFTG---- 104 (455)
T ss_pred ccCCCHHHcCcCCCCcchHHHHHHHHHHH-hhc-CCCEEEECCCceecccEEEC----CCcEEEecCCcEEEEEcC----
Confidence 45789999999999 9999999999975 443 35799999999999999999 89999987 432110011
Q ss_pred CCCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCcceEEEeCee---
Q 015254 98 DAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAK--- 174 (410)
Q Consensus 98 ~~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~--- 174 (410)
...++...+.++|+|+|. +|+|+|..|. .+|. .|.+..|++++|++++|.++..|+|.++.|+
T Consensus 105 -~~~lIiai~A~nVTIsGL-tIdGsG~dl~----------~rdA--gI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I 170 (455)
T TIGR03808 105 -GPSLLSSEGADGIGLSGL-TLDGGGIPLP----------QRRG--LIHCQGGRDVRITDCEITGSGGNGIWLETVSGDI 170 (455)
T ss_pred -CceEEEEecCCCeEEEee-EEEeCCCccc----------CCCC--EEEEccCCceEEEeeEEEcCCcceEEEEcCcceE
Confidence 145666667899999996 9999997642 4677 8999999999999999999999999999999
Q ss_pred -------------------eEEEEeEEEECCCC--------------------------------CCCCCceEeeccccE
Q 015254 175 -------------------NFTFQRVTVTAPEE--------------------------------SLNTDGIHVGRSSGV 203 (410)
Q Consensus 175 -------------------nv~i~n~~i~~~~~--------------------------------~~n~DGi~~~~s~nv 203 (410)
++.|++.+|....+ ....+||+++.+.++
T Consensus 171 ~~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v 250 (455)
T TIGR03808 171 SGNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNV 250 (455)
T ss_pred ecceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCe
Confidence 55555555554332 123556666666666
Q ss_pred EEEeeEEecCC-ceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCC-CCCc
Q 015254 204 TITDSKIGTGD-DCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPA-SYPG 281 (410)
Q Consensus 204 ~I~n~~i~~gd-D~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g-~~~g 281 (410)
+|++.+|+..+ |+|-+.+ ++|++|++++|..-.=+++-++ +.. +.-.|+|+.+.+...|+.+-.... ++-.
T Consensus 251 ~V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym--fs~----~g~~i~~N~~~g~~~G~av~nf~~ggr~~ 323 (455)
T TIGR03808 251 IVRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE--FAF----EGAVIANNTVDGAAVGVSVCNFNEGGRLA 323 (455)
T ss_pred EEECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE--EeC----CCcEEeccEEecCcceEEEEeecCCceEE
Confidence 66666666666 6666555 4566666666653110111111 000 112355666666666666654432 2223
Q ss_pred ceeeEEEEeEEEec
Q 015254 282 TASDLHFEDIKMNN 295 (410)
Q Consensus 282 ~v~nI~~~ni~~~~ 295 (410)
.+..=.++|++-+.
T Consensus 324 ~~~gn~irn~~~~~ 337 (455)
T TIGR03808 324 VVQGNIIRNLIPKR 337 (455)
T ss_pred EEecceeeccccCC
Confidence 45555556655544
No 10
>PLN02793 Probable polygalacturonase
Probab=99.89 E-value=2e-20 Score=188.07 Aligned_cols=219 Identities=15% Similarity=0.229 Sum_probs=173.4
Q ss_pred ccEEEEEeeEEEeeCCccCccC------------CCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeee
Q 015254 77 AAIELQVKGTLKALTDPANVKD------------AGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSN 144 (410)
Q Consensus 77 s~v~l~~~G~i~~~~~~~~~~~------------~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~ 144 (410)
++++|.+.|+|.+. ....|.. +..++.+.+++|++|+|--+. ..|. |.
T Consensus 143 ~ni~ItG~G~IDG~-G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~------------------nSp~-~~ 202 (443)
T PLN02793 143 NHLTVEGGGTVNGM-GHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVI------------------DSQQ-MH 202 (443)
T ss_pred ceEEEEeceEEECC-CcccccccccccCCCCccCCceEEEEEeeccEEEECeEEE------------------cCCC-eE
Confidence 68888888888763 2333421 135789999999999994332 2354 79
Q ss_pred EEEEeeccEEEEeEEEecc----CcceEEEeCeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEe
Q 015254 145 LSFNAITNSVVQDVTSLNS----KQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISI 219 (410)
Q Consensus 145 i~~~~~~nv~I~~i~i~ns----~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i 219 (410)
+.+.+|+|++|++++|.++ ..+||++..|+||.|+|++|.+ ..|+|.+. +++||+|+||.+..|+ +|++
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~Gh-GisI 276 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPGH-GISI 276 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCCc-cEEE
Confidence 9999999999999999874 3579999999999999999998 46778885 6999999999998875 6999
Q ss_pred cC--------CceeEEEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCC---------Cc
Q 015254 220 GD--------GTQQMEINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASY---------PG 281 (410)
Q Consensus 220 ~s--------~~~nv~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~---------~g 281 (410)
++ +.+||+|+||++.+. .|++|++... ..+.++||+|+|++|.+..++|.|.+++... ..
T Consensus 277 GSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v 354 (443)
T PLN02793 277 GSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAV 354 (443)
T ss_pred ecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCe
Confidence 87 269999999999875 6999998632 3478999999999999999999998754221 24
Q ss_pred ceeeEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEeec
Q 015254 282 TASDLHFEDIKMNNVS-NPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSA 335 (410)
Q Consensus 282 ~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~~~ 335 (410)
.++||+|+||+.+... .++.+.- .+..+++||+|+||+++..
T Consensus 355 ~I~nI~~~nI~Gt~~~~~ai~l~c------------s~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 355 KVENISFVHIKGTSATEEAIKFAC------------SDSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred EEEeEEEEEEEEEEcccccEEEEe------------CCCCCEeeEEEEeeEEEec
Confidence 6899999999988753 3666643 1334799999999998864
No 11
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.88 E-value=6.6e-20 Score=182.26 Aligned_cols=221 Identities=17% Similarity=0.199 Sum_probs=173.5
Q ss_pred ccEEEEEeeEEEeeCCccCccC-----------CCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeE
Q 015254 77 AAIELQVKGTLKALTDPANVKD-----------AGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNL 145 (410)
Q Consensus 77 s~v~l~~~G~i~~~~~~~~~~~-----------~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i 145 (410)
.+++|.+.|+|.+.. ...|.. +..++.+.+++|+.|+|--+ ...|. |.+
T Consensus 122 ~ni~I~G~G~IDG~G-~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl------------------~nSp~-w~i 181 (404)
T PLN02188 122 NGLTLTGGGTFDGQG-AAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITS------------------VNSKF-FHI 181 (404)
T ss_pred eeEEEEeeEEEeCCC-cccccccccccCCCCCcCceEEEEEeeeeEEEeCeEE------------------EcCCC-eEE
Confidence 688888889887643 234421 14578999999999999322 23455 899
Q ss_pred EEEeeccEEEEeEEEecc----CcceEEEeCeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEec
Q 015254 146 SFNAITNSVVQDVTSLNS----KQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIG 220 (410)
Q Consensus 146 ~~~~~~nv~I~~i~i~ns----~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~ 220 (410)
++..|++++|+++++.++ -.++|+++.|+|+.|+|++|.+ ..|+|.+. .++||+|+|+....+ .+|+++
T Consensus 182 ~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~g-hGisiG 255 (404)
T PLN02188 182 ALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGPG-HGISVG 255 (404)
T ss_pred EEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcCC-CcEEeC
Confidence 999999999999999864 2478999999999999999998 46788886 478999999999777 468987
Q ss_pred C--------CceeEEEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCC---------CCcc
Q 015254 221 D--------GTQQMEINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPAS---------YPGT 282 (410)
Q Consensus 221 s--------~~~nv~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~---------~~g~ 282 (410)
+ +.+||+|+||++.+. +|+.|++.....+.+.++||+|+|++|.+...++.|.+.+.. ....
T Consensus 256 SlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~ 335 (404)
T PLN02188 256 SLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVT 335 (404)
T ss_pred CCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcE
Confidence 7 369999999999875 699999853323457899999999999999999988764321 1357
Q ss_pred eeeEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEeec
Q 015254 283 ASDLHFEDIKMNNVS-NPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSA 335 (410)
Q Consensus 283 v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~~~ 335 (410)
++||+|+||+.+... .++.+.- .+..+++||+|+||+++..
T Consensus 336 I~nIt~~nI~gt~~~~~a~~l~c------------s~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 336 LSDIYFKNIRGTSSSQVAVLLKC------------SRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEeEEEEEEEEEecCceEEEEEE------------CCCCCEeeEEEEeeEEEec
Confidence 999999999998753 3555543 1335799999999999864
No 12
>PLN02218 polygalacturonase ADPG
Probab=99.87 E-value=5.6e-20 Score=183.97 Aligned_cols=238 Identities=15% Similarity=0.186 Sum_probs=180.0
Q ss_pred cEEEEcCce--EEe--eeeEecCCCCccEEEEEe--eEEEeeCCccCccC------------CCccEEEEeeeeEEEEeC
Q 015254 55 SKVLIPQGT--YQL--SPVTMEGPCKAAIELQVK--GTLKALTDPANVKD------------AGSWVSFNKIEHLTVSGG 116 (410)
Q Consensus 55 ~~v~~P~G~--Y~i--~~l~l~~~~~s~v~l~~~--G~i~~~~~~~~~~~------------~~~~i~~~~~~nv~I~G~ 116 (410)
++|.+|+.. |.- ..|.+.+. ++++|.+. |+|.+.. ...|.. +..++.+.+++|++|+|-
T Consensus 132 g~L~~s~d~~~y~~~~~wi~~~~~--~ni~I~G~~~GtIDG~G-~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gi 208 (431)
T PLN02218 132 GTLSASQKRSDYKDISKWIMFDGV--NNLSVDGGSTGVVDGNG-ETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNL 208 (431)
T ss_pred EEEEeCCChhhccccccCEEEecC--cEEEEECCCCcEEeCCc-hhhhhcccccCCcCccCcCCEEEEEEccccEEEeCe
Confidence 466665542 422 24555543 68888885 8887532 334421 134688999999999993
Q ss_pred eEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEecc----CcceEEEeCeeeEEEEeEEEECCCCCCCC
Q 015254 117 GTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNS----KQFHINVIGAKNFTFQRVTVTAPEESLNT 192 (410)
Q Consensus 117 G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns----~~~~i~~~~~~nv~i~n~~i~~~~~~~n~ 192 (410)
-+. ..|. |.+.+.+|+|++|+++++.++ -.+||++.+|+||.|+|++|.+ ..
T Consensus 209 tl~------------------nSp~-w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~t-----GD 264 (431)
T PLN02218 209 RVR------------------NAQQ-IQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGT-----GD 264 (431)
T ss_pred EEE------------------cCCC-EEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEec-----CC
Confidence 222 2355 799999999999999999863 3479999999999999999998 45
Q ss_pred CceEeec-cccEEEEeeEEecCCceEEecC--------CceeEEEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceE
Q 015254 193 DGIHVGR-SSGVTITDSKIGTGDDCISIGD--------GTQQMEINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECN 262 (410)
Q Consensus 193 DGi~~~~-s~nv~I~n~~i~~gdD~i~i~s--------~~~nv~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~ 262 (410)
|.|.+.+ ++||+|+||.+..++ +|+++| +.+||+|+||++.+. .|+.|++... ..+.++||+|+|++
T Consensus 265 DcIaIksgs~nI~I~n~~c~~GH-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G--g~G~v~nI~f~ni~ 341 (431)
T PLN02218 265 DCISIESGSQNVQINDITCGPGH-GISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG--GSGTASNIIFQNIQ 341 (431)
T ss_pred ceEEecCCCceEEEEeEEEECCC-CEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCC--CCeEEEEEEEEeEE
Confidence 7788874 889999999998764 689987 258999999999875 5999998632 35799999999999
Q ss_pred EecCCeeEEEEecCCC--------CCcceeeEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEe
Q 015254 263 ISNTSNGVRIKTWPAS--------YPGTASDLHFEDIKMNNVS-NPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGT 333 (410)
Q Consensus 263 ~~~~~~gi~iks~~g~--------~~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~ 333 (410)
|.+..+++.|...+.. +...++||+|+||+.+... .++.+.- .+..+++||+|+||.++
T Consensus 342 m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~c------------s~~~pc~nI~l~nV~i~ 409 (431)
T PLN02218 342 MENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFNC------------SKNYPCQGIVLDNVNIK 409 (431)
T ss_pred EEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEEE------------CCCCCEeeEEEEeEEEE
Confidence 9999999988875422 1246899999999998653 3555543 12347999999999987
Q ss_pred e
Q 015254 334 S 334 (410)
Q Consensus 334 ~ 334 (410)
.
T Consensus 410 ~ 410 (431)
T PLN02218 410 G 410 (431)
T ss_pred C
Confidence 5
No 13
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.86 E-value=4.4e-19 Score=177.21 Aligned_cols=225 Identities=13% Similarity=0.197 Sum_probs=175.1
Q ss_pred eEecCCCCccEEEEEeeEEEeeCCccCccC---CCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeE
Q 015254 69 VTMEGPCKAAIELQVKGTLKALTDPANVKD---AGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNL 145 (410)
Q Consensus 69 l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~---~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i 145 (410)
|...+. ++++|.+.|+|.+. ....|.. +..++.+.+++|+.|+|--. ...|. |.+
T Consensus 107 I~f~~~--~~i~I~G~GtIDGq-G~~wW~~~~~rP~~l~f~~~~nv~I~gitl------------------~NSp~-w~i 164 (456)
T PLN03003 107 ILFTDI--EGLVIEGDGEINGQ-GSSWWEHKGSRPTALKFRSCNNLRLSGLTH------------------LDSPM-AHI 164 (456)
T ss_pred EEEEcc--cceEEeccceEeCC-chhhhhcccCCceEEEEEecCCcEEeCeEE------------------ecCCc-EEE
Confidence 444432 68889888988763 2344532 24578999999999999322 23455 799
Q ss_pred EEEeeccEEEEeEEEecc---C-cceEEEeCeeeEEEEeEEEECCCCCCCCCceEeec-cccEEEEeeEEecCCceEEec
Q 015254 146 SFNAITNSVVQDVTSLNS---K-QFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGR-SSGVTITDSKIGTGDDCISIG 220 (410)
Q Consensus 146 ~~~~~~nv~I~~i~i~ns---~-~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~-s~nv~I~n~~i~~gdD~i~i~ 220 (410)
.+.+|++++|+++++.++ | .+||++..|+||.|+|+.|.+ ..|+|.+.+ ++||+|+||.+..++ +|+++
T Consensus 165 ~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~t-----GDDCIaiksgs~NI~I~n~~c~~GH-GISIG 238 (456)
T PLN03003 165 HISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIAT-----GDDCIAINSGTSNIHISGIDCGPGH-GISIG 238 (456)
T ss_pred EEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEec-----CCCeEEeCCCCccEEEEeeEEECCC-CeEEe
Confidence 999999999999999874 2 479999999999999999998 457788874 789999999998764 78887
Q ss_pred C--------CceeEEEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCC-----------CC
Q 015254 221 D--------GTQQMEINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPAS-----------YP 280 (410)
Q Consensus 221 s--------~~~nv~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~-----------~~ 280 (410)
+ +.+||+|+||++.+. +|+.|++..+ ..+.++||+|+|++|.+..++|.|.+.+.. ..
T Consensus 239 Slg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G--g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~ 316 (456)
T PLN03003 239 SLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG--GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSA 316 (456)
T ss_pred eccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC--CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCC
Confidence 7 279999999999875 5999998632 246899999999999999999988776531 12
Q ss_pred cceeeEEEEeEEEecC-CccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEeec
Q 015254 281 GTASDLHFEDIKMNNV-SNPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSA 335 (410)
Q Consensus 281 g~v~nI~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~~~ 335 (410)
..++||+|+||+.+.. +.++.+.- .+..+.+||+|+||.++..
T Consensus 317 v~IsnI~f~NI~GTs~~~~ai~l~C------------s~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 317 VEVSKVVFSNFIGTSKSEYGVDFRC------------SERVPCTEIFLRDMKIETA 360 (456)
T ss_pred cEEEeEEEEeEEEEeCccceEEEEe------------CCCCCeeeEEEEEEEEEec
Confidence 4689999999997654 34665542 1345799999999998764
No 14
>PLN02155 polygalacturonase
Probab=99.85 E-value=5.4e-19 Score=175.03 Aligned_cols=219 Identities=19% Similarity=0.231 Sum_probs=168.5
Q ss_pred ccEEEEEeeEEEeeCCccCccC---------CCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEE
Q 015254 77 AAIELQVKGTLKALTDPANVKD---------AGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSF 147 (410)
Q Consensus 77 s~v~l~~~G~i~~~~~~~~~~~---------~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~ 147 (410)
++++|.. |+|.+.. ...|.. ...++.+.+++|++|+|--. ...|. |.+++
T Consensus 115 ~~i~i~G-G~iDGqG-~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl------------------~nSp~-w~i~~ 173 (394)
T PLN02155 115 NRFSLVG-GTFDARA-NGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKS------------------MNSQV-SHMTL 173 (394)
T ss_pred CCCEEEc-cEEecCc-eeEEEcccCCCCCCCcccceeEEEeeeEEEECeEE------------------EcCCC-eEEEE
Confidence 5677776 7775532 233321 12468999999999999322 13455 89999
Q ss_pred EeeccEEEEeEEEeccC----cceEEEeCeeeEEEEeEEEECCCCCCCCCceEeec-cccEEEEeeEEecCCceEEecCC
Q 015254 148 NAITNSVVQDVTSLNSK----QFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGR-SSGVTITDSKIGTGDDCISIGDG 222 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~----~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~-s~nv~I~n~~i~~gdD~i~i~s~ 222 (410)
.+|+|++|++++|.++. .+||++..|+||.|+|++|.+ ..|+|.+.+ ++||+|+||.+..|+ ++++++-
T Consensus 174 ~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~Gh-GisIGS~ 247 (394)
T PLN02155 174 NGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQT-----GDDCVAIGPGTRNFLITKLACGPGH-GVSIGSL 247 (394)
T ss_pred ECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEec-----CCceEEcCCCCceEEEEEEEEECCc-eEEeccc
Confidence 99999999999998743 379999999999999999998 457788875 789999999998764 6999872
Q ss_pred --------ceeEEEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCC---------Cccee
Q 015254 223 --------TQQMEINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASY---------PGTAS 284 (410)
Q Consensus 223 --------~~nv~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~---------~g~v~ 284 (410)
.+||+|+||++.+. .|+.|++... ...+.|+||+|+|++|.+...++.|.+.+... ...++
T Consensus 248 g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~ 326 (394)
T PLN02155 248 AKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKIS 326 (394)
T ss_pred cccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEE
Confidence 59999999999875 5999998411 13588999999999999999999987644210 13689
Q ss_pred eEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEeec
Q 015254 285 DLHFEDIKMNNVS-NPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSA 335 (410)
Q Consensus 285 nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~~~ 335 (410)
||+|+|++..... .++.+.- .+..+.+||+|+||+++..
T Consensus 327 ~It~~ni~gt~~~~~a~~l~c------------~~~~pc~~I~l~nv~i~~~ 366 (394)
T PLN02155 327 QVTYKNIQGTSATQEAMKLVC------------SKSSPCTGITLQDIKLTYN 366 (394)
T ss_pred EEEEEeeEEEecCCceEEEEe------------CCCCCEEEEEEEeeEEEec
Confidence 9999999988764 3555543 1234799999999998875
No 15
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.85 E-value=5.3e-19 Score=174.71 Aligned_cols=276 Identities=14% Similarity=0.223 Sum_probs=158.3
Q ss_pred cEEEEcCceEEee---eeEecCCCCcc-EEEEEe-eEEEeeCCccCccCCCccEEEEeeeeEEEEeCeEecCCCCCCCcc
Q 015254 55 SKVLIPQGTYQLS---PVTMEGPCKAA-IELQVK-GTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSE 129 (410)
Q Consensus 55 ~~v~~P~G~Y~i~---~l~l~~~~~s~-v~l~~~-G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~ 129 (410)
.+|||+||+|.++ .+.|+ ++ .+++++ |.++. +.+......+|++|.|.|+++|..+.|...
T Consensus 233 ~~lYF~PGVy~ig~~~~l~L~----sn~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~A~ 298 (582)
T PF03718_consen 233 DTLYFKPGVYWIGSDYHLRLP----SNTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVYEAD 298 (582)
T ss_dssp SEEEE-SEEEEEBCTC-EEE-----TT--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-TTBB
T ss_pred ceEEeCCceEEeCCCccEEEC----CCccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeEecc
Confidence 6999999999997 38898 66 489998 77654 455555678999999999999998877421
Q ss_pred cccCCC----C---C--CCCeeeeEEEEeeccEEEEeEEEeccCcceEEEeCee----eEEEEeEEEECCCCCCCCCceE
Q 015254 130 CEKDDY----C---K--KRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAK----NFTFQRVTVTAPEESLNTDGIH 196 (410)
Q Consensus 130 ~~~~~~----~---~--~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~----nv~i~n~~i~~~~~~~n~DGi~ 196 (410)
...+.. . . .--+.|.+....++++.++|++|.++|.|.+.+.+.+ ...|+|.++..... .++|||.
T Consensus 299 ~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qtDGi~ 377 (582)
T PF03718_consen 299 TEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQTDGIE 377 (582)
T ss_dssp CCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT----B
T ss_pred CCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-eccCCcc
Confidence 111100 0 0 0012244456677899999999999999999999655 58999999998554 7999999
Q ss_pred eeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCc-e--EEEeecCccCCCCCEEEEEEEceEEecCC------
Q 015254 197 VGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGH-G--ISVGSLGKYQNEQPVVGIRVRECNISNTS------ 267 (410)
Q Consensus 197 ~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~-G--i~igs~g~~~~~~~v~nv~i~n~~~~~~~------ 267 (410)
+. ++-+|+||+++..||+|.+.. .++.|+||+++..+ | +.+|.. ...++||+|+|+.+.+..
T Consensus 378 ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~~~ 448 (582)
T PF03718_consen 378 LY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWHNN 448 (582)
T ss_dssp ----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSGGC
T ss_pred cc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeecccC
Confidence 97 577889999999999997765 69999999998643 3 777753 567999999999999863
Q ss_pred ---eeEEEEe--cC--CCC-----CcceeeEEEEeEEEecCCc-cEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEee
Q 015254 268 ---NGVRIKT--WP--ASY-----PGTASDLHFEDIKMNNVSN-PILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTS 334 (410)
Q Consensus 268 ---~gi~iks--~~--g~~-----~g~v~nI~~~ni~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~~ 334 (410)
.+|--.+ +. ++. .-.+++++|+|+++|+.-. .+.|.+.. ....+.|+|+.|+...+..
T Consensus 449 ~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plq---------n~~nl~ikN~~~~~w~~~~ 519 (582)
T PF03718_consen 449 YVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQ---------NYDNLVIKNVHFESWNGLD 519 (582)
T ss_dssp TTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SE---------EEEEEEEEEEEECEET-CG
T ss_pred CCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecC---------CCcceEEEEeecccccCcc
Confidence 2432211 10 111 1257999999999998654 66676521 1122345555555433322
Q ss_pred cCcc--eEEEe-cC---CCCceecEEEEeEEEEec
Q 015254 335 ATAV--AIKLA-CS---GGVPCEGVELADISLTYT 363 (410)
Q Consensus 335 ~~~~--~~~i~-~~---~~~~~~ni~~~nv~i~~~ 363 (410)
-... .+... .. ......+|.|+|.++.++
T Consensus 520 ~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 520 ITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp CSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred cccceeeccccccccccccccccceEEEeEEECCE
Confidence 1111 11111 11 123478999999998543
No 16
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.84 E-value=1.7e-19 Score=166.59 Aligned_cols=206 Identities=24% Similarity=0.348 Sum_probs=106.9
Q ss_pred eeEeecCCCcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCceEEee-eeEecCCCCccEEEEEee---E-EEeeCCccC
Q 015254 23 DVDVTKHGAKQN--ADISQALRDAWKEACAATTPSKVLIPQGTYQLS-PVTMEGPCKAAIELQVKG---T-LKALTDPAN 95 (410)
Q Consensus 23 ~~~v~d~Ga~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G~Y~i~-~l~l~~~~~s~v~l~~~G---~-i~~~~~~~~ 95 (410)
.+||++|||++| +|||+|||+||++ .+..++++||||||+|+++ +|.++ ++++|+++| + +........
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~-~~~~~g~~v~~P~G~Y~i~~~l~~~----s~v~l~G~g~~~~~~~~~~~~~~ 75 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDA-AAAAGGGVVYFPPGTYRISGTLIIP----SNVTLRGAGGNSTILFLSGSGDS 75 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHH-HCSTTSEEEEE-SEEEEESS-EEE-----TTEEEEESSTTTEEEEECTTTST
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhh-cccCCCeEEEEcCcEEEEeCCeEcC----CCeEEEccCCCeeEEEecCcccc
Confidence 479999999999 9999999999944 4445789999999999997 59999 899999975 2 332222222
Q ss_pred ccCCCccEEE--------EeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCcce
Q 015254 96 VKDAGSWVSF--------NKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFH 167 (410)
Q Consensus 96 ~~~~~~~i~~--------~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~ 167 (410)
+........+ ..++|++|.| .+...- .... .+.+..++++.|+++++.++...+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~i~nl~i~~------~~~~~~----------~~~~--~i~~~~~~~~~i~nv~~~~~~~~~ 137 (225)
T PF12708_consen 76 FSVVPGIGVFDSGNSNIGIQIRNLTIDG------NGIDPN----------NNNN--GIRFNSSQNVSISNVRIENSGGDG 137 (225)
T ss_dssp SCCEEEEEECCSCSCCEEEEEEEEEEEE------TCGCE-----------SCEE--EEEETTEEEEEEEEEEEES-SS-S
T ss_pred cccccceeeeecCCCCceEEEEeeEEEc------ccccCC----------CCce--EEEEEeCCeEEEEeEEEEccCccE
Confidence 2100000111 1134444444 221100 0122 566666777777777777766666
Q ss_pred EEEeCeeeEEEEeEEEECCCCCCCCCceEeec-cccEEEEeeEEecCCceEEecCCceeEEEEeEEEcC--CceEEEeec
Q 015254 168 INVIGAKNFTFQRVTVTAPEESLNTDGIHVGR-SSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGP--GHGISVGSL 244 (410)
Q Consensus 168 i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~-s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~--~~Gi~igs~ 244 (410)
+.+..+....+.+.... .++.+.. +.++.+.++.+..+++++.. +.+++.|+||++.. ..|+.+-..
T Consensus 138 i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~i~n~~~~~~~~~gi~i~~~ 207 (225)
T PF12708_consen 138 IYFNTGTDYRIIGSTHV--------SGIFIDNGSNNVIVNNCIFNGGDNGIIL--GNNNITISNNTFEGNCGNGINIEGG 207 (225)
T ss_dssp EEEECCEECEEECCEEE--------EEEEEESCEEEEEEECEEEESSSCSEEC--EEEEEEEECEEEESSSSESEEEEEC
T ss_pred EEEEccccCcEeecccc--------eeeeeccceeEEEECCccccCCCceeEe--ecceEEEEeEEECCccceeEEEECC
Confidence 66654333333222111 0122221 23455556666655555222 12556666665543 235555322
Q ss_pred CccCCCCCEEEEEEEceEEecCCeeE
Q 015254 245 GKYQNEQPVVGIRVRECNISNTSNGV 270 (410)
Q Consensus 245 g~~~~~~~v~nv~i~n~~~~~~~~gi 270 (410)
.+++|+|+++++...|+
T Consensus 208 ---------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 ---------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp ---------SEEEEEEEEEESSSEEE
T ss_pred ---------eEEEEEeEEEECCccCc
Confidence 22555555555555444
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.84 E-value=5.4e-19 Score=172.67 Aligned_cols=218 Identities=19% Similarity=0.251 Sum_probs=166.8
Q ss_pred ccEEEEEeeEEEeeCCccCccC----------CCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEE
Q 015254 77 AAIELQVKGTLKALTDPANVKD----------AGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLS 146 (410)
Q Consensus 77 s~v~l~~~G~i~~~~~~~~~~~----------~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~ 146 (410)
+++++.+.|+|.+... ..|.. +..++.+.++++++|+|.-.. ..|. |.+.
T Consensus 60 ~ni~i~G~G~IDG~G~-~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~------------------nsp~-w~~~ 119 (326)
T PF00295_consen 60 ENITITGKGTIDGNGQ-AWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIR------------------NSPF-WHIH 119 (326)
T ss_dssp EEEECTTSSEEE--GG-GTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEE------------------S-SS-ESEE
T ss_pred EEEEecCCceEcCchh-hhhccccccccccccccceeeeeeecceEEEeeEec------------------CCCe-eEEE
Confidence 3555555577765322 33321 246799999999999993222 2354 8999
Q ss_pred EEeeccEEEEeEEEeccC----cceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccc-cEEEEeeEEecCCceEEecC
Q 015254 147 FNAITNSVVQDVTSLNSK----QFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSS-GVTITDSKIGTGDDCISIGD 221 (410)
Q Consensus 147 ~~~~~nv~I~~i~i~ns~----~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~gdD~i~i~s 221 (410)
+.+|+|++|++++|.++. .+|+++..|+|++|+|+.|.+ ..|+|.+.+.. +|+|+||.+..++ ++++++
T Consensus 120 ~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~gh-GisiGS 193 (326)
T PF00295_consen 120 INDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDN-----GDDCIAIKSGSGNILVENCTCSGGH-GISIGS 193 (326)
T ss_dssp EESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEES-----SSESEEESSEECEEEEESEEEESSS-EEEEEE
T ss_pred EEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeeccc-----ccCcccccccccceEEEeEEEeccc-cceeee
Confidence 999999999999998764 369999999999999999998 46778888644 9999999998764 588865
Q ss_pred ---C-----ceeEEEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCC--------CCccee
Q 015254 222 ---G-----TQQMEINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPAS--------YPGTAS 284 (410)
Q Consensus 222 ---~-----~~nv~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~--------~~g~v~ 284 (410)
+ .+||+++||++.+. +|+.|++.- +..+.++||+|+|++|++..+++.|...... ....++
T Consensus 194 ~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~ 271 (326)
T PF00295_consen 194 EGSGGSQNDIRNVTFENCTIINTDNGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSIS 271 (326)
T ss_dssp ESSSSE--EEEEEEEEEEEEESESEEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEE
T ss_pred ccCCccccEEEeEEEEEEEeeccceEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEE
Confidence 2 48999999999875 599999852 2468999999999999999999888764322 125799
Q ss_pred eEEEEeEEEecCC-ccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEee
Q 015254 285 DLHFEDIKMNNVS-NPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTS 334 (410)
Q Consensus 285 nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~~ 334 (410)
||+|+||+..... .++.+... +..+++||+|+||.++.
T Consensus 272 nI~~~nitg~~~~~~~i~i~~~------------~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 272 NITFRNITGTSAGSSAISIDCS------------PGSPCSNITFENVNITG 310 (326)
T ss_dssp EEEEEEEEEEESTSEEEEEE-B------------TTSSEEEEEEEEEEEES
T ss_pred EEEEEeeEEEeccceEEEEEEC------------CcCcEEeEEEEeEEEEc
Confidence 9999999998776 56666531 23479999999999988
No 18
>PLN03010 polygalacturonase
Probab=99.82 E-value=8.6e-18 Score=166.87 Aligned_cols=215 Identities=17% Similarity=0.233 Sum_probs=168.0
Q ss_pred ccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEE
Q 015254 77 AAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQ 156 (410)
Q Consensus 77 s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~ 156 (410)
++++|.+.|+|.+.. ...| .++.+.+++|++|+|--.. ..|+ |.+.+.+|++++|+
T Consensus 139 ~nv~I~G~G~IDG~G-~~ww----~~l~~~~~~nv~v~gitl~------------------nsp~-~~i~i~~~~nv~i~ 194 (409)
T PLN03010 139 SGLMIDGSGTIDGRG-SSFW----EALHISKCDNLTINGITSI------------------DSPK-NHISIKTCNYVAIS 194 (409)
T ss_pred cccEEeeceEEeCCC-cccc----ceEEEEeecCeEEeeeEEE------------------cCCc-eEEEEeccccEEEE
Confidence 688888889987532 2333 2689999999999993222 3455 79999999999999
Q ss_pred eEEEeccC----cceEEEeCeeeEEEEeEEEECCCCCCCCCceEeec-cccEEEEeeEEecCCceEEecCC--------c
Q 015254 157 DVTSLNSK----QFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGR-SSGVTITDSKIGTGDDCISIGDG--------T 223 (410)
Q Consensus 157 ~i~i~ns~----~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~-s~nv~I~n~~i~~gdD~i~i~s~--------~ 223 (410)
++++.++. .+|+++..|+||+|+|+.|.+ ..|+|.+.+ +.++.|+++....+ .+|++++- .
T Consensus 195 ~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~-----gDDcIaiksgs~ni~I~~~~C~~g-HGisIGS~g~~~~~~~V 268 (409)
T PLN03010 195 KINILAPETSPNTDGIDISYSTNINIFDSTIQT-----GDDCIAINSGSSNINITQINCGPG-HGISVGSLGADGANAKV 268 (409)
T ss_pred EEEEeCCCCCCCCCceeeeccceEEEEeeEEec-----CCCeEEecCCCCcEEEEEEEeECc-CCEEEccCCCCCCCCee
Confidence 99998743 478999999999999999998 457788865 56888888888765 47898872 6
Q ss_pred eeEEEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCC---------CcceeeEEEEeEEE
Q 015254 224 QQMEINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASY---------PGTASDLHFEDIKM 293 (410)
Q Consensus 224 ~nv~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~---------~g~v~nI~~~ni~~ 293 (410)
+||+|+||++... .|+.|++... ..+.++||+|+|++|++..++|.|.+.+... .-.++||+|+||+-
T Consensus 269 ~nV~v~n~~i~~t~~GirIKt~~G--~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~G 346 (409)
T PLN03010 269 SDVHVTHCTFNQTTNGARIKTWQG--GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRG 346 (409)
T ss_pred EEEEEEeeEEeCCCcceEEEEecC--CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEE
Confidence 9999999999875 6999998632 3578999999999999999999998765321 13689999999998
Q ss_pred ecCC-ccEEEEeeeCCCCCCCCCCCCceeEEeEEEEeEEEeec
Q 015254 294 NNVS-NPILLDQVYCPHNQCNAKVPSRVKLDRVSFKNIRGTSA 335 (410)
Q Consensus 294 ~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nVtf~nI~~~~~ 335 (410)
+... .++.+.- + +..+.+||+|+||.++..
T Consensus 347 T~~~~~~i~l~C---s---------~~~pC~ni~~~~v~l~~~ 377 (409)
T PLN03010 347 TTSNENAITLKC---S---------AITHCKDVVMDDIDVTME 377 (409)
T ss_pred EeCCCccEEEEe---C---------CCCCEeceEEEEEEEEec
Confidence 7543 4555532 1 224688999999998865
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.66 E-value=1.5e-14 Score=140.37 Aligned_cols=197 Identities=19% Similarity=0.277 Sum_probs=119.4
Q ss_pred HHHHHHHHhhcCCCcEEEEcCceEEe-eeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEeCeEe
Q 015254 41 LRDAWKEACAATTPSKVLIPQGTYQL-SPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTF 119 (410)
Q Consensus 41 iq~Ai~~a~~~~~g~~v~~P~G~Y~i-~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i 119 (410)
||+|+++| + .|++|+||+|+|.+ ++|.+.. ++++|..+|. +.. +|
T Consensus 1 iQ~Ai~~A-~--~GDtI~l~~G~Y~~~~~l~I~~---~~Iti~G~g~----------------------~~t------vi 46 (314)
T TIGR03805 1 LQEALIAA-Q--PGDTIVLPEGVFQFDRTLSLDA---DGVTIRGAGM----------------------DET------IL 46 (314)
T ss_pred CHhHHhhC-C--CCCEEEECCCEEEcceeEEEeC---CCeEEEecCC----------------------Ccc------EE
Confidence 68998653 3 46899999999987 4777752 4566554431 001 12
Q ss_pred cCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCcceEEEeCeeeEEEEeEEEECCCC---CCCCCceE
Q 015254 120 DGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEE---SLNTDGIH 196 (410)
Q Consensus 120 dG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~---~~n~DGi~ 196 (410)
|+.++.. ... .+ ...+++++|+++++.++..++|.+..|++++|+++++..... ....+||.
T Consensus 47 d~~~~~~------------~~~--~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~ 111 (314)
T TIGR03805 47 DFSGQVG------------GAE--GL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIY 111 (314)
T ss_pred ecccCCC------------CCc--eE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEE
Confidence 2222210 011 23 334677777777777777777777777777777777763221 12456777
Q ss_pred eeccccEEEEeeEEecC-CceEEecCCceeEEEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEe
Q 015254 197 VGRSSGVTITDSKIGTG-DDCISIGDGTQQMEINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKT 274 (410)
Q Consensus 197 ~~~s~nv~I~n~~i~~g-dD~i~i~s~~~nv~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks 274 (410)
+..|++++|++|.++.. |++|.++. +++++|+++++... .||.+-. ..++.|+++.+.+...|+.+-.
T Consensus 112 ~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~~ 181 (314)
T TIGR03805 112 PVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILVFD 181 (314)
T ss_pred EeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEEee
Confidence 77777777777777764 34676665 56777777777654 3666632 2456677777777666777655
Q ss_pred cCCCCCcceeeEEEEeEEEecC
Q 015254 275 WPASYPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 275 ~~g~~~g~v~nI~~~ni~~~~~ 296 (410)
.++.....-+++++.+.++.+.
T Consensus 182 ~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 182 LPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred cCCCCcCCccceEEECCEEECC
Confidence 5543223345666666665543
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.37 E-value=1.4e-11 Score=125.28 Aligned_cols=153 Identities=15% Similarity=0.216 Sum_probs=127.7
Q ss_pred cceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCC----ceEEecCCceeEEEEeEEEcCCc-eE
Q 015254 165 QFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGD----DCISIGDGTQQMEINKIDCGPGH-GI 239 (410)
Q Consensus 165 ~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gd----D~i~i~s~~~nv~I~n~~~~~~~-Gi 239 (410)
-..+.+..|+||.+++++|.+++. -++|+..|++++++|..+.+.+ |++.+.+ ++|++|++|+|..++ .+
T Consensus 238 p~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~I 312 (542)
T COG5434 238 PRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDCI 312 (542)
T ss_pred CceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCceE
Confidence 356889999999999999999754 5689999999999999998744 5888888 899999999999875 79
Q ss_pred EEeecCccC---CCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecCCccEEEEeeeCCCCCCCCCC
Q 015254 240 SVGSLGKYQ---NEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLDQVYCPHNQCNAKV 316 (410)
Q Consensus 240 ~igs~g~~~---~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~ 316 (410)
+|+|..... -...-++|.|+||.|...+.++.+.++. +|.|+||++||+.+.+...++.|++..
T Consensus 313 ~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~~~~d~GLRikt~~---------- 379 (542)
T COG5434 313 AIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVMDNTDRGLRIKTND---------- 379 (542)
T ss_pred EeecccCCcccccccccccEEEecceecccccceEeeeec---CCceeEEEEEeeeeccCcceeeeeeec----------
Confidence 998743221 1245689999999999888788888877 578999999999999999999999853
Q ss_pred CCceeEEeEEEEeEEEeec
Q 015254 317 PSRVKLDRVSFKNIRGTSA 335 (410)
Q Consensus 317 ~~~~~i~nVtf~nI~~~~~ 335 (410)
..++.++||+|+++.....
T Consensus 380 ~~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 380 GRGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred ccceeEEEEEEecccccCc
Confidence 3346899999999887665
No 21
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=99.26 E-value=1.2e-10 Score=107.30 Aligned_cols=201 Identities=22% Similarity=0.371 Sum_probs=118.9
Q ss_pred cceeeEeecCCCcCCchhHHHHHHHHHHHhhcCCCcEEEEcCceE--Ee-eeeEecCCCCccEEEEEeeEEEeeCCccCc
Q 015254 20 AALDVDVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGTY--QL-SPVTMEGPCKAAIELQVKGTLKALTDPANV 96 (410)
Q Consensus 20 ~~~~~~v~d~Ga~gdtDdt~aiq~Ai~~a~~~~~g~~v~~P~G~Y--~i-~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~ 96 (410)
...++++.||-. .|.-++|.+|+.+ +.||++|+|-- .+ ..+.++ .+-||.+.|.+.+...
T Consensus 31 ~~~~vni~dy~~---~dwiasfkqaf~e------~qtvvvpagl~cenint~ifip----~gktl~v~g~l~gngr---- 93 (464)
T PRK10123 31 ARQSVNINDYNP---HDWIASFKQAFSE------GQTVVVPAGLVCDNINTGIFIP----PGKTLHILGSLRGNGR---- 93 (464)
T ss_pred CCceeehhhcCc---ccHHHHHHHHhcc------CcEEEecCccEecccccceEeC----CCCeEEEEEEeecCCc----
Confidence 456899999986 6889999999854 47999999962 23 478888 7889999999876322
Q ss_pred cCCCccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEE-EeeccEEEEeEEEec-cCcceEEEeCe-
Q 015254 97 KDAGSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSF-NAITNSVVQDVTSLN-SKQFHINVIGA- 173 (410)
Q Consensus 97 ~~~~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~-~~~~nv~I~~i~i~n-s~~~~i~~~~~- 173 (410)
+.++..++|+ +.|+ + ..+-+ .+.+ ...+++.|+++.+.. .|...|.+.+-
T Consensus 94 ---grfvlqdg~q---v~ge----~---------------~g~~h--nitldvrgsdc~ikgiamsgfgpvtqiyiggk~ 146 (464)
T PRK10123 94 ---GRFVLQDGSQ---VTGE----E---------------GGSMH--NITLDVRGSDCTIKGLAMSGFGPVTQIYIGGKN 146 (464)
T ss_pred ---eeEEEecCCE---eecC----C---------------Cceee--eEEEeeccCceEEeeeeecccCceeEEEEcCCC
Confidence 4555555532 3331 0 01112 2332 233456777777654 23344554443
Q ss_pred ----eeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEec-CCceE----EecCCceeEEE-----EeEEEcCC---
Q 015254 174 ----KNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGT-GDDCI----SIGDGTQQMEI-----NKIDCGPG--- 236 (410)
Q Consensus 174 ----~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i----~i~s~~~nv~I-----~n~~~~~~--- 236 (410)
+|++|+++++....++--..|+|-. -...+|.||.|.. +.|+| ++.. +|++| +.+.|.+|
T Consensus 147 prvmrnl~id~itv~~anyailrqgfhnq-~dgaritn~rfs~lqgdaiewnvaind--r~ilisdhvie~inctngkin 223 (464)
T PRK10123 147 KRVMRNLTIDNLTVSHANYAILRQGFHNQ-IIGANITNCKFSDLQGDAIEWNVAIND--RDILISDHVIERINCTNGKIN 223 (464)
T ss_pred chhhhccEEccEEEeeccHHHHhhhhhhc-cccceeeccccccccCceEEEEEEecc--cceeeehheheeecccCCccc
Confidence 5777777777765443345666643 3677888888875 44554 3333 44444 55556654
Q ss_pred ceEEEeecCccC-----CCCCEEEEEEEceEEecCC
Q 015254 237 HGISVGSLGKYQ-----NEQPVVGIRVRECNISNTS 267 (410)
Q Consensus 237 ~Gi~igs~g~~~-----~~~~v~nv~i~n~~~~~~~ 267 (410)
.||.||-.|... +...|.|.++-|++-.++.
T Consensus 224 wgigiglagstydn~ype~q~vknfvvanitgs~cr 259 (464)
T PRK10123 224 WGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCR 259 (464)
T ss_pred ceeeeeeccccccCCCchhhhhhhEEEEeccCcChh
Confidence 377776554322 2233444444444444333
No 22
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.97 E-value=2.8e-07 Score=89.64 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=117.1
Q ss_pred eEEEEeeccEEEEeEEEec-------cCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCce
Q 015254 144 NLSFNAITNSVVQDVTSLN-------SKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDC 216 (410)
Q Consensus 144 ~i~~~~~~nv~I~~i~i~n-------s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~ 216 (410)
.|.+..+++++|+++++.. ...++|.+..|+++.|+++++... ...||.+..|++++|++++++....+
T Consensus 79 GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~----~d~GIyv~~s~~~~v~nN~~~~n~~G 154 (314)
T TIGR03805 79 GVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGA----SDAGIYVGQSQNIVVRNNVAEENVAG 154 (314)
T ss_pred eEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECC----CcccEEECCCCCeEEECCEEccCcce
Confidence 6888999999999999962 346899999999999999999873 33599999999999999999998889
Q ss_pred EEecCCceeEEEEeEEEcC-CceEEEeecCccCCCCCEEEEEEEceEEecCCe------eEEEEecCCCCCcce----ee
Q 015254 217 ISIGDGTQQMEINKIDCGP-GHGISVGSLGKYQNEQPVVGIRVRECNISNTSN------GVRIKTWPASYPGTA----SD 285 (410)
Q Consensus 217 i~i~s~~~nv~I~n~~~~~-~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~------gi~iks~~g~~~g~v----~n 285 (410)
|.+.. +.++.|+++.+.. ..|+.+-+.... .....++++|+++.+.+... |-.+...+.+ .|.+ ++
T Consensus 155 I~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g-~Gi~i~~~~~ 231 (314)
T TIGR03805 155 IEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAG-TGVVVMANRD 231 (314)
T ss_pred EEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceEEECCEEECCCCCCCcccCCceecCCCC-cEEEEEcccc
Confidence 98875 6899999999976 458877443111 12456899999999987532 1112122222 2443 89
Q ss_pred EEEEeEEEecCCc-cEEEEe
Q 015254 286 LHFEDIKMNNVSN-PILLDQ 304 (410)
Q Consensus 286 I~~~ni~~~~~~~-~i~i~~ 304 (410)
+.++|.++++... ++.+..
T Consensus 232 v~I~~N~i~~n~~~~i~~~~ 251 (314)
T TIGR03805 232 VEIFGNVISNNDTANVLISS 251 (314)
T ss_pred eEEECCEEeCCcceeEEEEe
Confidence 9999999998875 666654
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.79 E-value=7.2e-08 Score=88.46 Aligned_cols=125 Identities=14% Similarity=0.219 Sum_probs=85.5
Q ss_pred EEEeeccEEEEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCC-----CCCce------EeeccccEEEEeeEEecCC
Q 015254 146 SFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESL-----NTDGI------HVGRSSGVTITDSKIGTGD 214 (410)
Q Consensus 146 ~~~~~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~-----n~DGi------~~~~s~nv~I~n~~i~~gd 214 (410)
.|+.|++++++++++.+++-. +..|+++.++|+.+.+.-... .-||+ .+.+++||.|+|+.+.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 467788888888888777643 335677777777774321111 12233 2345889999999888865
Q ss_pred ceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEe
Q 015254 215 DCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMN 294 (410)
Q Consensus 215 D~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~ 294 (410)
|+. .++||+|.|+.+. |=.+|.. .+|+++.||++.+.+ |+ .+++|++++|+++.
T Consensus 170 ---AFW-n~eNVtVyDS~i~---GEYLgW~--------SkNltliNC~I~g~Q-pL----------CY~~~L~l~nC~~~ 223 (277)
T PF12541_consen 170 ---AFW-NCENVTVYDSVIN---GEYLGWN--------SKNLTLINCTIEGTQ-PL----------CYCDNLVLENCTMI 223 (277)
T ss_pred ---ccc-cCCceEEEcceEe---eeEEEEE--------cCCeEEEEeEEeccC-cc----------EeecceEEeCcEee
Confidence 233 3789999998885 3233332 278999999998866 55 67899999999998
Q ss_pred cCCcc
Q 015254 295 NVSNP 299 (410)
Q Consensus 295 ~~~~~ 299 (410)
++..+
T Consensus 224 ~tdla 228 (277)
T PF12541_consen 224 DTDLA 228 (277)
T ss_pred cceee
Confidence 76543
No 24
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.65 E-value=3.3e-07 Score=79.18 Aligned_cols=140 Identities=23% Similarity=0.341 Sum_probs=96.8
Q ss_pred eEEEEeeccEEEEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCc
Q 015254 144 NLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGT 223 (410)
Q Consensus 144 ~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~ 223 (410)
.|.+....+++|++++|.+....++.+..+..++|++++|.. ...|+.+....++++++|.+.....++.+. +.
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 467777888999999999999999999999999999999998 467899988899999999999877677676 47
Q ss_pred eeEEEEeEEEcCC--ceEEEeecCccCCCCCEEEEEEEceEEecCC-eeEEEEecCCCCCcceeeEEEEeEEEecCC-cc
Q 015254 224 QQMEINKIDCGPG--HGISVGSLGKYQNEQPVVGIRVRECNISNTS-NGVRIKTWPASYPGTASDLHFEDIKMNNVS-NP 299 (410)
Q Consensus 224 ~nv~I~n~~~~~~--~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~-~gi~iks~~g~~~g~v~nI~~~ni~~~~~~-~~ 299 (410)
..++|++|.+... .|+.+.. ...+++|+++++.+.. .|+.+.... -.+++++++++.+.. ++
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~g 141 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNG 141 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCccee
Confidence 8999999999863 3777732 2467889999999876 677774432 246777888887765 45
Q ss_pred EEEE
Q 015254 300 ILLD 303 (410)
Q Consensus 300 i~i~ 303 (410)
+.+.
T Consensus 142 i~~~ 145 (158)
T PF13229_consen 142 IYLI 145 (158)
T ss_dssp EE-T
T ss_pred EEEE
Confidence 5543
No 25
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=4.6e-05 Score=71.47 Aligned_cols=139 Identities=19% Similarity=0.252 Sum_probs=82.0
Q ss_pred EEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEeCe---EecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEE
Q 015254 79 IELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGG---TFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVV 155 (410)
Q Consensus 79 v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G---~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I 155 (410)
+.|.+.|+|.++. +. ...+.+..+.|++|.|.| .+-| |.+.++...||.|
T Consensus 77 ~ii~v~Gti~~s~-ps-----~~k~~iki~sNkTivG~g~~a~~~g---------------------~gl~i~~a~NVIi 129 (345)
T COG3866 77 VIIVVKGTITAST-PS-----DKKITIKIGSNKTIVGSGADATLVG---------------------GGLKIRDAGNVII 129 (345)
T ss_pred EEEEEcceEeccC-CC-----CceEEEeeccccEEEeeccccEEEe---------------------ceEEEEeCCcEEE
Confidence 3566678887642 11 224778888999999953 1111 2567777778888
Q ss_pred EeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEe-eccccEEEEeeEEec---------CCceEEecCCcee
Q 015254 156 QDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHV-GRSSGVTITDSKIGT---------GDDCISIGDGTQQ 225 (410)
Q Consensus 156 ~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~-~~s~nv~I~n~~i~~---------gdD~i~i~s~~~n 225 (410)
+|++|+..+.+ .++-|+|.+ ..++||+|++|+|.. +|..+.++.++..
T Consensus 130 rNltf~~~~~~----------------------d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~Any 187 (345)
T COG3866 130 RNLTFEGFYQG----------------------DPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANY 187 (345)
T ss_pred EeeEEEeeccC----------------------CCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcE
Confidence 87777665421 012355555 345666666666654 3445667777777
Q ss_pred EEEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceEEecC
Q 015254 226 MEINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECNISNT 266 (410)
Q Consensus 226 v~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~ 266 (410)
|+|.+|.+... .+.-+|+--.......-.+|++.++++.+.
T Consensus 188 ITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 188 ITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred EEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 77777777643 355565532111113345677777777664
No 26
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.46 E-value=6e-05 Score=71.69 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=84.2
Q ss_pred CccEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCcceEEEeCeeeEEEE
Q 015254 100 GSWVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQ 179 (410)
Q Consensus 100 ~~~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~ 179 (410)
+..+.+. .+++.++| -++.+.|....+ .. .. .+.-...+.-.|+...+... .++|.+..+.++.|+
T Consensus 69 G~~vtv~-aP~~~v~G-l~vr~sg~~lp~--------m~-ag--I~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~ 134 (408)
T COG3420 69 GSYVTVA-APDVIVEG-LTVRGSGRSLPA--------MD-AG--IFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIE 134 (408)
T ss_pred ccEEEEe-CCCceeee-EEEecCCCCccc--------cc-ce--EEeccCcccceEEccccccc-ceEEEEeccCceEEE
Confidence 4455555 37788887 455555543211 00 11 23335556667777766554 379999999999999
Q ss_pred eEEEECCCC---CCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEc
Q 015254 180 RVTVTAPEE---SLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCG 234 (410)
Q Consensus 180 n~~i~~~~~---~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~ 234 (410)
..+|....+ ....+||+++++.+.+|....+.-+.|||..+. +++-.|+++.+.
T Consensus 135 ~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~~ 191 (408)
T COG3420 135 GNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRFR 191 (408)
T ss_pred eeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccchh
Confidence 999997554 246889999999999999999999999998877 556666666554
No 27
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.45 E-value=2.7e-06 Score=73.32 Aligned_cols=116 Identities=24% Similarity=0.363 Sum_probs=83.1
Q ss_pred eEEEEeeccEEEEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCc-eEEecCC
Q 015254 144 NLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDD-CISIGDG 222 (410)
Q Consensus 144 ~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD-~i~i~s~ 222 (410)
.+.+.....++|++.++.+ ...++.+....++.++++++.... .|+.+..+..++|++|.+....+ +|.+...
T Consensus 25 gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~ 98 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-----SGIYVSGSSNITIENNRIENNGDYGIYISNS 98 (158)
T ss_dssp CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCE
T ss_pred EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-----ceEEEEecCCceecCcEEEcCCCccEEEecc
Confidence 6888888889999999999 778999999999999999999842 78888899999999999987544 8888742
Q ss_pred ceeEEEEeEEEcCC--ceEEEeecCccCCCCCEEEEEEEceEEecCC-eeEEE
Q 015254 223 TQQMEINKIDCGPG--HGISVGSLGKYQNEQPVVGIRVRECNISNTS-NGVRI 272 (410)
Q Consensus 223 ~~nv~I~n~~~~~~--~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~-~gi~i 272 (410)
.++++|++|++... .|+.+... .-.+++|+++++.+.. .|+.+
T Consensus 99 ~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i~~~~~~gi~~ 144 (158)
T PF13229_consen 99 SSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTISNNGGNGIYL 144 (158)
T ss_dssp ECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEEECESSEEEE-
T ss_pred CCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEEEeCcceeEEE
Confidence 57999999999863 57777543 1347889999998875 67766
No 28
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.41 E-value=2.8e-05 Score=77.47 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=91.4
Q ss_pred eEEEEeeccEEEEeEEEeccC------cceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEec-CCce
Q 015254 144 NLSFNAITNSVVQDVTSLNSK------QFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGT-GDDC 216 (410)
Q Consensus 144 ~i~~~~~~nv~I~~i~i~ns~------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~ 216 (410)
.+.-...++++|++++|+++. ..+|.+..|++++|++++|.++. .-||.+..|+ ..|.++.+.. .+..
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 566677899999999999865 34789999999999999999842 2467777766 4444444443 3444
Q ss_pred EEecCCceeEEEEeEEEcCC--ceEEEeec------------------------CccCCC---CCEEEEEEEceEEecCC
Q 015254 217 ISIGDGTQQMEINKIDCGPG--HGISVGSL------------------------GKYQNE---QPVVGIRVRECNISNTS 267 (410)
Q Consensus 217 i~i~s~~~nv~I~n~~~~~~--~Gi~igs~------------------------g~~~~~---~~v~nv~i~n~~~~~~~ 267 (410)
|.+.. +++++|+++++... .||.|--. ++++.. -...+++|+++++.++.
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 44433 55666666666542 23444311 111110 12346677777777777
Q ss_pred -eeEEEEecCCCCCcceeeEEEEeEEEecCCc-cEEEE
Q 015254 268 -NGVRIKTWPASYPGTASDLHFEDIKMNNVSN-PILLD 303 (410)
Q Consensus 268 -~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~-~i~i~ 303 (410)
.|+++.+ .+|++|.+.++++.++ +++..
T Consensus 262 ~dgI~~ns--------ss~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 262 YSAVRGNS--------ASNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred cceEEEEc--------ccCcEEECcEeeeeeeeEEEEE
Confidence 6777632 3566666666666666 55543
No 29
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.38 E-value=2.9e-05 Score=72.21 Aligned_cols=111 Identities=21% Similarity=0.280 Sum_probs=64.7
Q ss_pred chhHHHHHHHHHHHhhcCCCcEEEEcCceEEe-----eeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeee
Q 015254 35 ADISQALRDAWKEACAATTPSKVLIPQGTYQL-----SPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIE 109 (410)
Q Consensus 35 tDdt~aiq~Ai~~a~~~~~g~~v~~P~G~Y~i-----~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~ 109 (410)
.-.-+-|++|++.|. .|.+|++.||+|.- -||.++ ++++|+.+..-+. . .
T Consensus 12 ~~P~~Ti~~A~~~a~---~g~~i~l~~GtY~~~~ge~fPi~i~----~gVtl~G~~~~kG-----------~-------~ 66 (246)
T PF07602_consen 12 SAPFKTITKALQAAQ---PGDTIQLAPGTYSEATGETFPIIIK----PGVTLIGNESNKG-----------Q-------I 66 (246)
T ss_pred ccCHHHHHHHHHhCC---CCCEEEECCceeccccCCcccEEec----CCeEEeecccCCC-----------c-------c
Confidence 344567899985432 45799999999954 278888 8898887642221 0 1
Q ss_pred eEEEEeCe---EecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEecc---CcceEEEeCeeeEEEEeEEE
Q 015254 110 HLTVSGGG---TFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNS---KQFHINVIGAKNFTFQRVTV 183 (410)
Q Consensus 110 nv~I~G~G---~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns---~~~~i~~~~~~nv~i~n~~i 183 (410)
.+.+.|.+ +|+|.+... .-. .+.+....+.+|+++++.|+ ...++.++.+ +.+|+|++|
T Consensus 67 ~il~~g~~~~~~I~g~~~~~------------~~q--n~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI~Nntf 131 (246)
T PF07602_consen 67 DILITGGGTGPTISGGGPDL------------SGQ--NVTIILANNATISGVTITNPNIARGTGIWIESS-SPTIANNTF 131 (246)
T ss_pred eEEecCCceEEeEeccCccc------------cce--eEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEEEeeEE
Confidence 22333211 233332210 012 45666677778888888776 2235555554 666666666
Q ss_pred EC
Q 015254 184 TA 185 (410)
Q Consensus 184 ~~ 185 (410)
..
T Consensus 132 ~~ 133 (246)
T PF07602_consen 132 TN 133 (246)
T ss_pred EC
Confidence 65
No 30
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.30 E-value=3e-05 Score=72.37 Aligned_cols=113 Identities=23% Similarity=0.292 Sum_probs=88.5
Q ss_pred eEEEEeeccEEEEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCc
Q 015254 144 NLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGT 223 (410)
Q Consensus 144 ~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~ 223 (410)
.+.+..+.+++|++.++.+. .+++++..+++.+|++..+.. +..||.+..+.+.+|+++.+.....+|.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 46778888899999988887 788889988888999998887 3488888888877999998887767887776 5
Q ss_pred eeEEEEeEEEcC-CceEEEeecCccCCCCCEEEEEEEceEEecC-CeeEEE
Q 015254 224 QQMEINKIDCGP-GHGISVGSLGKYQNEQPVVGIRVRECNISNT-SNGVRI 272 (410)
Q Consensus 224 ~nv~I~n~~~~~-~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~-~~gi~i 272 (410)
.+.+|+++++.. ..||.+... .+.+|+++++.+. ..|+.+
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSSS---------SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred CceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEeCCCccceEE
Confidence 677888888864 347777431 6677888888887 778873
No 31
>smart00656 Amb_all Amb_all domain.
Probab=98.27 E-value=5.1e-05 Score=68.46 Aligned_cols=96 Identities=17% Similarity=0.230 Sum_probs=67.9
Q ss_pred EeCeeeEEEEeEEEECCCC--CCCCCceEeeccccEEEEeeEEecC----------CceEEecCCceeEEEEeEEEcCCc
Q 015254 170 VIGAKNFTFQRVTVTAPEE--SLNTDGIHVGRSSGVTITDSKIGTG----------DDCISIGDGTQQMEINKIDCGPGH 237 (410)
Q Consensus 170 ~~~~~nv~i~n~~i~~~~~--~~n~DGi~~~~s~nv~I~n~~i~~g----------dD~i~i~s~~~nv~I~n~~~~~~~ 237 (410)
+..++||.|+|++|+.... ..+.|+|.+..+++|.|..|.|..+ |..+.++.++.+++|++|.|..-+
T Consensus 36 i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~ 115 (190)
T smart00656 36 IKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHW 115 (190)
T ss_pred EEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCC
Confidence 3334566666666665332 1367899998899999999999876 556788888999999999997543
Q ss_pred -eEEEeecCccCCCCCEEEEEEEceEEecC
Q 015254 238 -GISVGSLGKYQNEQPVVGIRVRECNISNT 266 (410)
Q Consensus 238 -Gi~igs~g~~~~~~~v~nv~i~n~~~~~~ 266 (410)
+.-+|+.-.. ......+|++.++.+.+.
T Consensus 116 ~~~liG~~d~~-~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 116 KVMLLGHSDSD-TDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred EEEEEccCCCc-cccccceEEEECcEEcCc
Confidence 7778763111 112245899999999774
No 32
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.27 E-value=1.6e-05 Score=73.35 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=72.2
Q ss_pred EeeccEEEEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEE
Q 015254 148 NAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQME 227 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~ 227 (410)
-+++|+.++++.+.. .-.+++|+|+.|+|.++.+-+ .++.|+||+|.|+.+.. . -+.-.++|++
T Consensus 134 m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~sKD--------AFWn~eNVtVyDS~i~G--E--YLgW~SkNlt 197 (277)
T PF12541_consen 134 MNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDSKD--------AFWNCENVTVYDSVING--E--YLGWNSKNLT 197 (277)
T ss_pred eeccceEEeceEEeC----CEEeeceeeEEEEccEEeccc--------ccccCCceEEEcceEee--e--EEEEEcCCeE
Confidence 456666666666643 235788999999999999742 35789999999999974 2 2333359999
Q ss_pred EEeEEEcCCceEEEeecCccCCCCCEEEEEEEceEEecCCeeE
Q 015254 228 INKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGV 270 (410)
Q Consensus 228 I~n~~~~~~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi 270 (410)
..||++.+.+|+. ++.|++.+||+|.++.-++
T Consensus 198 liNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdlaF 229 (277)
T PF12541_consen 198 LINCTIEGTQPLC-----------YCDNLVLENCTMIDTDLAF 229 (277)
T ss_pred EEEeEEeccCccE-----------eecceEEeCcEeecceeee
Confidence 9999997666544 4699999999999877444
No 33
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.24 E-value=0.00024 Score=70.72 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEcCceEEeeeeEec
Q 015254 37 ISQALRDAWKEACAATTPSKVLIPQGTYQLSPVTME 72 (410)
Q Consensus 37 dt~aiq~Ai~~a~~~~~g~~v~~P~G~Y~i~~l~l~ 72 (410)
+.++||+|+++|. +|++|+++.|+|.-..|.+.
T Consensus 3 s~~~lq~Ai~~a~---pGD~I~L~~Gty~~~~i~~~ 35 (425)
T PF14592_consen 3 SVAELQSAIDNAK---PGDTIVLADGTYKDVEIVFK 35 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-
T ss_pred CHHHHHHHHHhCC---CCCEEEECCceeecceEEEE
Confidence 5789999997543 46899999999974345544
No 34
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.22 E-value=4.9e-05 Score=70.92 Aligned_cols=135 Identities=21% Similarity=0.208 Sum_probs=110.2
Q ss_pred eEEEEeeccEEEEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCc
Q 015254 144 NLSFNAITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGT 223 (410)
Q Consensus 144 ~i~~~~~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~ 223 (410)
.+.+..+++..|++.++.+.. .++.+..+.+++|++.++.. +..||++..+++++|+++.+.....+|.+....
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~ 88 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMGSS 88 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEcCC
Confidence 588889999999999997664 67899999999999999997 478999999999999999999887999998844
Q ss_pred eeEEEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecC-CccEE
Q 015254 224 QQMEINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNV-SNPIL 301 (410)
Q Consensus 224 ~nv~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~-~~~i~ 301 (410)
+.+|+++++... .||.+.. ..+.+|+++++.+...|+.+... .+.++++.++.+. ..+|.
T Consensus 89 -~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 89 -NNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred -CcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccceE
Confidence 559999999864 4887743 24577999999988889988432 5566777777776 66777
Q ss_pred E
Q 015254 302 L 302 (410)
Q Consensus 302 i 302 (410)
+
T Consensus 151 ~ 151 (236)
T PF05048_consen 151 F 151 (236)
T ss_pred E
Confidence 3
No 35
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=0.00012 Score=68.82 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=83.9
Q ss_pred EEEEeeccEEEEeEEEec-cCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCc
Q 015254 145 LSFNAITNSVVQDVTSLN-SKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGT 223 (410)
Q Consensus 145 i~~~~~~nv~I~~i~i~n-s~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~ 223 (410)
+.+.-+.|.+|.++--.. --.+++.+.+.+||.|+|++|+.. ...|+ .+|.|.|..+.
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~---~~~d~------------------~~D~Isi~~~~ 153 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGF---YQGDP------------------NYDAISIYDDG 153 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEee---ccCCC------------------CCCcEEeccCC
Confidence 667777777777665321 123566676677777777777752 22221 16889997668
Q ss_pred eeEEEEeEEEcCC---------ce-EEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCC-CcceeeEEEEeEE
Q 015254 224 QQMEINKIDCGPG---------HG-ISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASY-PGTASDLHFEDIK 292 (410)
Q Consensus 224 ~nv~I~n~~~~~~---------~G-i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~-~g~v~nI~~~ni~ 292 (410)
+||=|.+|++..+ +| +.|+ .....|+|+++++.+...++-+.+..... .+.-..|||.+..
T Consensus 154 ~nIWIDH~tf~~~s~~~~~~h~DGl~Dik--------~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNy 225 (345)
T COG3866 154 HNIWIDHNTFSGGSYNASGSHGDGLVDIK--------KDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNY 225 (345)
T ss_pred eEEEEEeeEeccccccccccCCCccEEec--------cCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccc
Confidence 9999999999752 23 4443 34477999999999998888776544321 1345778888888
Q ss_pred EecCC
Q 015254 293 MNNVS 297 (410)
Q Consensus 293 ~~~~~ 297 (410)
+++..
T Consensus 226 Fkn~~ 230 (345)
T COG3866 226 FKNLY 230 (345)
T ss_pred ccccc
Confidence 88765
No 36
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.11 E-value=9e-05 Score=74.76 Aligned_cols=172 Identities=15% Similarity=0.197 Sum_probs=98.3
Q ss_pred EEEeCeeeEEEEeEEEECCCCCCCCCceEeeccc----cEEEEeeEEec----CCceEEecCCceeEEEEeEEEcCC-ce
Q 015254 168 INVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSS----GVTITDSKIGT----GDDCISIGDGTQQMEINKIDCGPG-HG 238 (410)
Q Consensus 168 i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~----nv~I~n~~i~~----gdD~i~i~s~~~nv~I~n~~~~~~-~G 238 (410)
+....+++..+++++|..++.. .+++.+.. +..|+|..... +.|++.+.. +-+|+||.+... ++
T Consensus 323 ~~~~g~q~~~~~GiTI~~pP~~----Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~---nS~i~dcF~h~nDD~ 395 (582)
T PF03718_consen 323 ISANGGQTLTCEGITINDPPFH----SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP---NSTIRDCFIHVNDDA 395 (582)
T ss_dssp CS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B--T---T-EEEEEEEEESS-S
T ss_pred hccCCcceEEEEeeEecCCCcc----eEEecCCccccccceeeceeeeeeEEeccCCccccC---CCeeeeeEEEecCch
Confidence 3456788999999999997652 26666433 47888887653 678998876 668899998754 46
Q ss_pred EEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecCC---------ccEEEE-eeeCC
Q 015254 239 ISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVS---------NPILLD-QVYCP 308 (410)
Q Consensus 239 i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~---------~~i~i~-~~~~~ 308 (410)
|.+ +.+++.++|+++....+|--|.- |.....++||.|+|+.+-..+ .+|.-. .+|.+
T Consensus 396 iKl----------YhS~v~v~~~ViWk~~Ngpiiq~--GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~ 463 (582)
T PF03718_consen 396 IKL----------YHSNVSVSNTVIWKNENGPIIQW--GWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDD 463 (582)
T ss_dssp EE------------STTEEEEEEEEEE-SSS-SEE----CS---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS
T ss_pred hhe----------eecCcceeeeEEEecCCCCeEEe--eccccccCceEEeeeEEEeeeeecccCCCCceeEeccccccc
Confidence 755 23789999999998877643422 222467999999999885432 234433 34432
Q ss_pred CCCCCCCCCCceeEEeEEEEeEEEeecCcceEEEecCCCCceecEEEEeEEEE
Q 015254 309 HNQCNAKVPSRVKLDRVSFKNIRGTSATAVAIKLACSGGVPCEGVELADISLT 361 (410)
Q Consensus 309 ~~~~~~~~~~~~~i~nVtf~nI~~~~~~~~~~~i~~~~~~~~~ni~~~nv~i~ 361 (410)
..... ...+...|++++|+||++.+.....+.|. +-..-+|+.++||.+.
T Consensus 464 ~~s~~-~adp~~ti~~~~~~nv~~EG~~~~l~ri~--plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 464 MASTK-TADPSTTIRNMTFSNVRCEGMCPCLFRIY--PLQNYDNLVIKNVHFE 513 (582)
T ss_dssp -SSS---BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEEC
T ss_pred ccCCC-CCCcccceeeEEEEeEEEecccceeEEEe--ecCCCcceEEEEeecc
Confidence 22211 23445689999999999888643334443 3334566778888886
No 37
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.08 E-value=0.0013 Score=60.17 Aligned_cols=123 Identities=20% Similarity=0.290 Sum_probs=81.6
Q ss_pred EEEEeEEEeccC------cceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeE
Q 015254 153 SVVQDVTSLNSK------QFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQM 226 (410)
Q Consensus 153 v~I~~i~i~ns~------~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv 226 (410)
+.|+++++.... ..++++..++++.++|+++.+ .+.+|+.+..+....+.+.... .++.+..++.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 448888876543 246888899999999999998 3567788775444444443322 123333345678
Q ss_pred EEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceEEec-CCeeEEEEecCCCCCcceeeEEEEeEEEecCCccE
Q 015254 227 EINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECNISN-TSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPI 300 (410)
Q Consensus 227 ~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~~~~-~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i 300 (410)
.+.++.+..+ .|+..++ ++++++||.+.+ ...|+.+... .+++++|++++++..+|
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~--------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGG--------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEEC--------SEEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECC--------eEEEEEeEEEECCccCc
Confidence 8888888764 3643332 789999999988 6678877432 23788888888877665
No 38
>PLN02480 Probable pectinesterase
Probab=97.99 E-value=0.0035 Score=61.39 Aligned_cols=131 Identities=12% Similarity=0.128 Sum_probs=72.6
Q ss_pred EeeccEEEEeEEEeccC---------cceEEE-eCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceE
Q 015254 148 NAITNSVVQDVTSLNSK---------QFHINV-IGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCI 217 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~---------~~~i~~-~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i 217 (410)
...++++++||+|+|+. ..++.+ ...+.+.+.||++....|.. - .....-.++||.|...=|-|
T Consensus 129 V~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTL-----y-~~~gR~yf~~C~IeG~VDFI 202 (343)
T PLN02480 129 VEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTL-----F-DYKGRHYYHSCYIQGSIDFI 202 (343)
T ss_pred EECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEeccccee-----E-eCCCCEEEEeCEEEeeeeEE
Confidence 34688999999999872 134444 35677888888888755422 1 12245677778877543432
Q ss_pred EecCCceeEEEEeEEEcCC-------ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEe
Q 015254 218 SIGDGTQQMEINKIDCGPG-------HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFED 290 (410)
Q Consensus 218 ~i~s~~~nv~I~n~~~~~~-------~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~n 290 (410)
+ |.-..++++|++..- .|. |-..+. ....-....|.||++.+.. -..+ |+..+.-..+.|.|
T Consensus 203 -F--G~g~a~fe~C~i~s~~~~~~~~~G~-ITA~~r--~~~~~~GfvF~~C~i~g~g-~~yL----GRPW~~ya~vVf~~ 271 (343)
T PLN02480 203 -F--GRGRSIFHNCEIFVIADRRVKIYGS-ITAHNR--ESEDNSGFVFIKGKVYGIG-EVYL----GRAKGAYSRVIFAK 271 (343)
T ss_pred -c--cceeEEEEccEEEEecCCCCCCceE-EEcCCC--CCCCCCEEEEECCEEcccC-ceee----ecCCCCcceEEEEe
Confidence 1 234677788877521 121 111111 1122345678888886532 1222 22234456666766
Q ss_pred EEEec
Q 015254 291 IKMNN 295 (410)
Q Consensus 291 i~~~~ 295 (410)
..|.+
T Consensus 272 t~l~~ 276 (343)
T PLN02480 272 TYLSK 276 (343)
T ss_pred cccCC
Confidence 66654
No 39
>smart00656 Amb_all Amb_all domain.
Probab=97.98 E-value=0.0011 Score=59.72 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=83.1
Q ss_pred eEEEEeeccEEEEeEEEeccC------cceEEEeCeeeEEEEeEEEECCCC----CCCCCce-Eee-ccccEEEEeeEEe
Q 015254 144 NLSFNAITNSVVQDVTSLNSK------QFHINVIGAKNFTFQRVTVTAPEE----SLNTDGI-HVG-RSSGVTITDSKIG 211 (410)
Q Consensus 144 ~i~~~~~~nv~I~~i~i~ns~------~~~i~~~~~~nv~i~n~~i~~~~~----~~n~DGi-~~~-~s~nv~I~n~~i~ 211 (410)
.+.+..++||.|+++++++.. .++|.+..++++.|++|++..... ....||+ ++. .+.+++|.+|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 466777889999999998753 368999999999999999997411 1124554 443 4799999999998
Q ss_pred cCCceEEecCCce-------eEEEEeEEEcCCce--EEEeecCccCCCCCEEEEEEEceEEecCC-eeEE
Q 015254 212 TGDDCISIGDGTQ-------QMEINKIDCGPGHG--ISVGSLGKYQNEQPVVGIRVRECNISNTS-NGVR 271 (410)
Q Consensus 212 ~gdD~i~i~s~~~-------nv~I~n~~~~~~~G--i~igs~g~~~~~~~v~nv~i~n~~~~~~~-~gi~ 271 (410)
..+-+..+.++.+ +|++.++.+.+..+ =.+. .+ .+++.|+.+.+.. +++.
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-------~g---~~hv~NN~~~n~~~~~~~ 172 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-------FG---YVHVYNNYYTGWTSYAIG 172 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-------CC---EEEEEeeEEeCcccEeEe
Confidence 7666666766432 69999998865321 1111 11 5788999998875 4443
No 40
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.84 E-value=0.00027 Score=64.34 Aligned_cols=99 Identities=21% Similarity=0.315 Sum_probs=66.0
Q ss_pred eEEEe-CeeeEEEEeEEEECC-----------CCCCCCCceEeeccccEEEEeeEEecC---------CceEEecCCcee
Q 015254 167 HINVI-GAKNFTFQRVTVTAP-----------EESLNTDGIHVGRSSGVTITDSKIGTG---------DDCISIGDGTQQ 225 (410)
Q Consensus 167 ~i~~~-~~~nv~i~n~~i~~~-----------~~~~n~DGi~~~~s~nv~I~n~~i~~g---------dD~i~i~s~~~n 225 (410)
++.+. .++||.|+|++|+.. ......|+|.+..+++|+|..|.+..+ |..+.++.++.+
T Consensus 38 G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~ 117 (200)
T PF00544_consen 38 GLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDN 117 (200)
T ss_dssp EEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEE
T ss_pred eEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCce
Confidence 44454 667777777777761 123568999999999999999999865 556888888999
Q ss_pred EEEEeEEEcCC-ceEEEeecCccCCCCCEEEEEEEceEEecC
Q 015254 226 MEINKIDCGPG-HGISVGSLGKYQNEQPVVGIRVRECNISNT 266 (410)
Q Consensus 226 v~I~n~~~~~~-~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~ 266 (410)
|+|++|.+... .+..+|+......... .++++.++.+.++
T Consensus 118 vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 118 VTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred EEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 99999999754 3566776422212233 8899999999764
No 41
>PLN02176 putative pectinesterase
Probab=97.75 E-value=0.014 Score=57.04 Aligned_cols=210 Identities=14% Similarity=0.175 Sum_probs=107.3
Q ss_pred eeEeecCCCcCCchhHHHHHHHHHHHhhcC-CCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCccCCCc
Q 015254 23 DVDVTKHGAKQNADISQALRDAWKEACAAT-TPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGS 101 (410)
Q Consensus 23 ~~~v~d~Ga~gdtDdt~aiq~Ai~~a~~~~-~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~ 101 (410)
.+-|..-| .-|-..||+||+++.... .--++++++|+|+=. +.++. .|.+++|.++|.- ..
T Consensus 40 ~i~Va~dG----sGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~Ek-V~Ip~-~k~~vtl~G~g~~------------~T 101 (340)
T PLN02176 40 TIIVNPND----ARYFKTVQSAIDSIPLQNQNWIRILIQNGIYREK-VTIPK-EKGYIYMQGKGIE------------KT 101 (340)
T ss_pred eEEECCCC----CCCccCHHHHHhhchhcCCceEEEEECCcEEEEE-EEECC-CCccEEEEEcCCC------------ce
Confidence 44444444 234667999987543322 123688999999743 33321 0257777766410 11
Q ss_pred cEEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCc----------ceEEEe
Q 015254 102 WVSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQ----------FHINVI 171 (410)
Q Consensus 102 ~i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~----------~~i~~~ 171 (410)
.|...+ . . . ... .. .+.+ ..+++..+|++|+|... ..+.+.
T Consensus 102 iIt~~~-------------~--~--~--------t~~-sa--T~~v-~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~ 152 (340)
T PLN02176 102 IIAYGD-------------H--Q--A--------TDT-SA--TFTS-YASNIIITGITFKNTYNIASNSSRPTKPAVAAR 152 (340)
T ss_pred EEEEeC-------------C--c--c--------ccc-ce--EEEE-ECCCEEEEeeEEEeCCCccCCCCCCccceEEEE
Confidence 111110 0 0 0 000 11 3333 47889999999988631 222222
Q ss_pred -CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC---------ceEEE
Q 015254 172 -GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPG---------HGISV 241 (410)
Q Consensus 172 -~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~---------~Gi~i 241 (410)
..+...+.+|++....|.. -. ....-.++||.|...=|-|- + .....+++|++..- .|. |
T Consensus 153 v~gDr~~f~~C~f~G~QDTL-----y~-~~gRqyf~~CyIeG~VDFIF-G--~a~a~Fe~C~I~s~~~~~~~~~~~g~-I 222 (340)
T PLN02176 153 MLGDKYAIIDSSFDGFQDTL-----FD-GKGRHYYKRCVISGGIDFIF-G--YAQSIFEGCTLKLTLGIYPPNEPYGT-I 222 (340)
T ss_pred ecCccEEEEccEEeccccee-----Ee-CCcCEEEEecEEEecccEEe-c--CceEEEeccEEEEecccCCCCCCcEE-E
Confidence 4577888888888754421 11 23456777888876545432 2 24677777777421 121 1
Q ss_pred eecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEec
Q 015254 242 GSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNN 295 (410)
Q Consensus 242 gs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~ 295 (410)
-..+. .....-....|.||++.... -..+ |+....-..+.|.|..|.+
T Consensus 223 TA~~r-~~~~~~~GfvF~~C~itg~g-~~yL----GRPW~~yarvVf~~t~m~~ 270 (340)
T PLN02176 223 TAQGR-PSPSDKGGFVFKDCTVTGVG-KALL----GRAWGSYARVIFYRSRFSD 270 (340)
T ss_pred EeCCC-CCCCCCcEEEEECCEEccCc-ceee----ecCCCCCceEEEEecCcCC
Confidence 11111 01123346778888887633 1222 2223445666677766654
No 42
>PLN02497 probable pectinesterase
Probab=97.60 E-value=0.02 Score=55.88 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=68.6
Q ss_pred EeeccEEEEeEEEeccCc-----------ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCc
Q 015254 148 NAITNSVVQDVTSLNSKQ-----------FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDD 215 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~-----------~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD 215 (410)
...+++..+|++|+|... ..+.+. ..+...+.+|.+....|..- .....-.++||.|...=|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy------~~~gRqyf~~C~IeG~VD 185 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLW------DSDGRHYFKRCTIQGAVD 185 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccccee------eCCCcEEEEeCEEEeccc
Confidence 357788999999988632 122222 45677778888877554221 122356677777775444
Q ss_pred eEEecCCceeEEEEeEEEcCC--------ce-EEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeE
Q 015254 216 CISIGDGTQQMEINKIDCGPG--------HG-ISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDL 286 (410)
Q Consensus 216 ~i~i~s~~~nv~I~n~~~~~~--------~G-i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI 286 (410)
-| ++ .-...+++|++..- .| |.- .++ ..........|.||++.... -..+ |+....-..+
T Consensus 186 FI-FG--~g~a~Fe~C~I~s~~~~~~~~~~g~ITA--~~r-~~~~~~~GfvF~~C~itg~g-~~yL----GRPW~~ysrv 254 (331)
T PLN02497 186 FI-FG--SGQSIYESCVIQVLGGQLEPGLAGFITA--QGR-TNPYDANGFVFKNCLVYGTG-SAYL----GRPWRGYSRV 254 (331)
T ss_pred EE-cc--CceEEEEccEEEEecCcCCCCCceEEEe--cCC-CCCCCCceEEEEccEEccCC-CEEE----eCCCCCCceE
Confidence 32 12 23567777776421 12 111 110 01223345677777776532 1222 2222334566
Q ss_pred EEEeEEEec
Q 015254 287 HFEDIKMNN 295 (410)
Q Consensus 287 ~~~ni~~~~ 295 (410)
.|.+..|.+
T Consensus 255 vf~~t~m~~ 263 (331)
T PLN02497 255 LFYNSNLTD 263 (331)
T ss_pred EEEecccCC
Confidence 666666655
No 43
>PLN02634 probable pectinesterase
Probab=97.57 E-value=0.031 Score=54.95 Aligned_cols=131 Identities=11% Similarity=0.138 Sum_probs=68.1
Q ss_pred eeccEEEEeEEEeccCc---------ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEE
Q 015254 149 AITNSVVQDVTSLNSKQ---------FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCIS 218 (410)
Q Consensus 149 ~~~nv~I~~i~i~ns~~---------~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~ 218 (410)
..+++..+||+|+|... ..+.+. ..+...+.+|.+....|... . ....-.++||.|...=|-|
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~-----~-~~gR~yf~~CyIeG~VDFI- 219 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLC-----D-DAGRHYFKECYIEGSIDFI- 219 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceee-----e-CCCCEEEEeeEEcccccEE-
Confidence 46788899999988631 122222 35667777777776544211 1 1235667777777544433
Q ss_pred ecCCceeEEEEeEEEcCC---ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEec
Q 015254 219 IGDGTQQMEINKIDCGPG---HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNN 295 (410)
Q Consensus 219 i~s~~~nv~I~n~~~~~~---~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~ 295 (410)
++ .-...+++|++..- .|. |-..++ .....-....|.||++.... -..+ |+..+.-..+.|.+..|.+
T Consensus 220 FG--~g~a~Fe~C~I~s~~~~~g~-ITA~~R-~~~~~~~GfvF~~C~vtg~g-~~yL----GRPW~~yarvVf~~t~l~~ 290 (359)
T PLN02634 220 FG--NGRSMYKDCELHSIASRFGS-IAAHGR-TCPEEKTGFAFVGCRVTGTG-PLYV----GRAMGQYSRIVYAYTYFDA 290 (359)
T ss_pred cC--CceEEEeccEEEEecCCCcE-EEeCCC-CCCCCCcEEEEEcCEEcCCc-ceEe----cCCCCCcceEEEEecccCC
Confidence 12 23566777776531 131 111111 01223345677777776533 1222 2223444556666666654
No 44
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.54 E-value=0.02 Score=57.35 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhhcC--CCcEEEEcCceEEeeeeEecCCCCccEEEEEee
Q 015254 37 ISQALRDAWKEACAAT--TPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKG 85 (410)
Q Consensus 37 dt~aiq~Ai~~a~~~~--~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G 85 (410)
+-.-||+||+++.... .--+|+|.+|+|.=. |.++. .|.+++|+++|
T Consensus 93 df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~Ek-V~Ip~-~kp~ItL~G~G 141 (422)
T PRK10531 93 THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQGT-VYVPA-AAPPITLYGTG 141 (422)
T ss_pred CccCHHHHHhhccccCCCceEEEEEeCceeEEE-EEeCC-CCceEEEEecC
Confidence 4567999987544321 124788999999733 34431 12578888765
No 45
>PLN02773 pectinesterase
Probab=97.44 E-value=0.034 Score=53.98 Aligned_cols=135 Identities=14% Similarity=0.156 Sum_probs=68.3
Q ss_pred EEEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEec
Q 015254 146 SFNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIG 220 (410)
Q Consensus 146 ~~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~ 220 (410)
.....+++..+||+|+|... ..+.+. ..+.+.+.+|++....|... .. ...-.++||.|...=|-| ++
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~-----~~-~gr~yf~~c~IeG~VDFI-FG 169 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLY-----LH-YGKQYLRDCYIEGSVDFI-FG 169 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeE-----eC-CCCEEEEeeEEeecccEE-ee
Confidence 33458899999999998732 122222 35667777777776544221 11 134666777776544433 12
Q ss_pred CCceeEEEEeEEEcC-CceEEEeecCccCCCCCEEEEEEEceEEecCCe--eEEEEecCCCCCcceeeEEEEeEEEec
Q 015254 221 DGTQQMEINKIDCGP-GHGISVGSLGKYQNEQPVVGIRVRECNISNTSN--GVRIKTWPASYPGTASDLHFEDIKMNN 295 (410)
Q Consensus 221 s~~~nv~I~n~~~~~-~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~--gi~iks~~g~~~g~v~nI~~~ni~~~~ 295 (410)
.-...+++|++.. ..|. |-..+. .....-....|.||++..... -..+ |+....-..+.|.|..|.+
T Consensus 170 --~g~a~Fe~c~i~s~~~g~-ITA~~r-~~~~~~~GfvF~~c~it~~~~~~~~yL----GRpW~~~a~vVf~~t~l~~ 239 (317)
T PLN02773 170 --NSTALLEHCHIHCKSAGF-ITAQSR-KSSQESTGYVFLRCVITGNGGSGYMYL----GRPWGPFGRVVFAYTYMDA 239 (317)
T ss_pred --ccEEEEEeeEEEEccCcE-EECCCC-CCCCCCceEEEEccEEecCCCCcceee----cCCCCCCceEEEEecccCC
Confidence 2356777777653 2231 100100 011122346677777765431 1122 2222334566666666654
No 46
>PLN02665 pectinesterase family protein
Probab=97.41 E-value=0.053 Score=53.66 Aligned_cols=137 Identities=13% Similarity=0.146 Sum_probs=76.7
Q ss_pred EEEEeeccEEEEeEEEeccCc---------ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCC
Q 015254 145 LSFNAITNSVVQDVTSLNSKQ---------FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGD 214 (410)
Q Consensus 145 i~~~~~~nv~I~~i~i~ns~~---------~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gd 214 (410)
-....++++..+||+|+|... ..+.+. ..+...+.||++....|.. -. ....-.++||.|...=
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL-----~~-~~gr~yf~~CyIeG~V 221 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTL-----CD-DKGRHFFKDCYIEGTV 221 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceecccccee-----Ee-CCCCEEEEeeEEeecc
Confidence 334567899999999998631 222222 4577888888888755422 11 1245677888887654
Q ss_pred ceEEecCCceeEEEEeEEEcC-Cce--EEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeE
Q 015254 215 DCISIGDGTQQMEINKIDCGP-GHG--ISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDI 291 (410)
Q Consensus 215 D~i~i~s~~~nv~I~n~~~~~-~~G--i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni 291 (410)
|-| .+ .-..++++|++.. ..+ -.|-..++ .....-....|.||++.+....+.+ |+..+.-..+.|.+.
T Consensus 222 DFI-FG--~g~a~fe~C~i~s~~~~~~g~ITA~~r-~~~~~~~GfvF~~C~itg~~~~~yL----GRpW~~ysrvVf~~t 293 (366)
T PLN02665 222 DFI-FG--SGKSLYLNTELHVVGDGGLRVITAQAR-NSEAEDSGFSFVHCKVTGTGTGAYL----GRAWMSRPRVVFAYT 293 (366)
T ss_pred cee-cc--ccceeeEccEEEEecCCCcEEEEcCCC-CCCCCCceEEEEeeEEecCCCceee----cCCCCCcceEEEEcc
Confidence 543 12 2466788887753 221 11111111 0112334667888888775422333 322344556777777
Q ss_pred EEec
Q 015254 292 KMNN 295 (410)
Q Consensus 292 ~~~~ 295 (410)
.|.+
T Consensus 294 ~m~~ 297 (366)
T PLN02665 294 EMSS 297 (366)
T ss_pred ccCC
Confidence 7765
No 47
>PLN02682 pectinesterase family protein
Probab=97.40 E-value=0.061 Score=53.20 Aligned_cols=135 Identities=14% Similarity=0.148 Sum_probs=74.7
Q ss_pred EEEeeccEEEEeEEEeccCc---------ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCc
Q 015254 146 SFNAITNSVVQDVTSLNSKQ---------FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDD 215 (410)
Q Consensus 146 ~~~~~~nv~I~~i~i~ns~~---------~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD 215 (410)
.....+++..+||+|+|+.. ..+.+. ..+...+.+|++....|..- . ....-.++||.|...=|
T Consensus 158 ~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy-----~-~~gRqyf~~C~IeG~VD 231 (369)
T PLN02682 158 FAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLY-----D-HLGRHYFKDCYIEGSVD 231 (369)
T ss_pred EEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceE-----E-CCCCEEEEeeEEccccc
Confidence 34457789999999998631 123332 46778888888887554221 1 22456777888876544
Q ss_pred eEEecCCceeEEEEeEEEcC---CceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEE
Q 015254 216 CISIGDGTQQMEINKIDCGP---GHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIK 292 (410)
Q Consensus 216 ~i~i~s~~~nv~I~n~~~~~---~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~ 292 (410)
-| .+ .-...+++|++.. ..| .|-..++. ....-....|.||++.... -+.+ |+....-..+.|.|..
T Consensus 232 FI-FG--~g~a~Fe~C~I~s~~~~~G-~ITA~~r~-~~~~~~GfvF~~C~itg~g-~~yL----GRpW~~yarvVf~~t~ 301 (369)
T PLN02682 232 FI-FG--NGLSLYEGCHLHAIARNFG-ALTAQKRQ-SVLEDTGFSFVNCKVTGSG-ALYL----GRAWGTFSRVVFAYTY 301 (369)
T ss_pred EE-ec--CceEEEEccEEEEecCCCe-EEecCCCC-CCCCCceEEEEeeEecCCC-ceEe----ecCCCCcceEEEEecc
Confidence 33 22 2477777777752 123 12111110 1122346778888887643 2222 2223445667777776
Q ss_pred EecC
Q 015254 293 MNNV 296 (410)
Q Consensus 293 ~~~~ 296 (410)
|.+.
T Consensus 302 m~~~ 305 (369)
T PLN02682 302 MDNI 305 (369)
T ss_pred CCCc
Confidence 6654
No 48
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.39 E-value=0.014 Score=60.93 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHhhc--CCCcEEEEcCceEEeeeeEecCCCCccEEEEEee
Q 015254 37 ISQALRDAWKEACAA--TTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKG 85 (410)
Q Consensus 37 dt~aiq~Ai~~a~~~--~~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G 85 (410)
+-.-||+||+++... ..--+|+|.+|+|.=. +.++. .|.+++|.++|
T Consensus 252 ~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~E~-V~i~~-~k~~v~l~G~g 300 (553)
T PLN02708 252 CYKTVQEAVNAAPDNNGDRKFVIRIKEGVYEET-VRVPL-EKKNVVFLGDG 300 (553)
T ss_pred CccCHHHHHHhhhhccCCccEEEEEeCceEEee-eeecC-CCccEEEEecC
Confidence 355688888765442 1224899999999742 33321 12467666654
No 49
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.27 E-value=0.071 Score=55.07 Aligned_cols=205 Identities=15% Similarity=0.185 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHhh--cCCCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEE
Q 015254 37 ISQALRDAWKEACA--ATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVS 114 (410)
Q Consensus 37 dt~aiq~Ai~~a~~--~~~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~ 114 (410)
|-.-||+||+++.. ...--+++|.+|+|.= .+.++. .|.+++|.++|. +...|+
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~E-~V~I~~-~k~nItl~G~g~----------------------~~TiIt 291 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAGTYHE-NLNIPT-KQKNVMLVGDGK----------------------GKTVIV 291 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCCeeEE-EEecCC-CCceEEEEEcCC----------------------CCeEEE
Confidence 46679999865332 1123578999999973 233321 125677766541 122233
Q ss_pred eCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCC
Q 015254 115 GGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEES 189 (410)
Q Consensus 115 G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 189 (410)
|... .++|.. . .+. .-.....+++..+|++|+|... ..+.+. ..+...+.+|++.+..|.
T Consensus 292 ~~~~-~~~g~~----------T-~~S---aTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDT 356 (529)
T PLN02170 292 GSRS-NRGGWT----------T-YQT---ATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDS 356 (529)
T ss_pred eCCc-CCCCCc----------c-ccc---eEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCc
Confidence 3100 000100 0 111 2344557889999999998632 233333 467888889998886553
Q ss_pred CCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC----ceEEEeecCccCCCCCEEEEEEEceEEec
Q 015254 190 LNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPG----HGISVGSLGKYQNEQPVVGIRVRECNISN 265 (410)
Q Consensus 190 ~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~----~Gi~igs~g~~~~~~~v~nv~i~n~~~~~ 265 (410)
.. . .+..-..++|.|...=|-| + |.-...++||.+..- ..-.|-..++ .+...-..+.|.||++..
T Consensus 357 Ly-----~-~~~Rqyy~~C~I~GtVDFI-F--G~a~avFq~C~I~~~~~~~~~g~ITAq~R-~~~~~~~Gfvf~~C~it~ 426 (529)
T PLN02170 357 LY-----T-HSKRQFYRETDITGTVDFI-F--GNSAVVFQSCNIAARKPSGDRNYVTAQGR-SDPNQNTGISIHNCRITA 426 (529)
T ss_pred ce-----e-CCCCEEEEeeEEcccccee-c--ccceEEEeccEEEEecCCCCceEEEecCC-CCCCCCceEEEEeeEEec
Confidence 21 1 2345677888888654433 1 234678888877521 1112211111 122334567888888877
Q ss_pred CCeeEEEEecCCCCCcceeeEEEEeEEEec
Q 015254 266 TSNGVRIKTWPASYPGTASDLHFEDIKMNN 295 (410)
Q Consensus 266 ~~~gi~iks~~g~~~g~v~nI~~~ni~~~~ 295 (410)
.. +.+=|+....-..+.|.+..+.+
T Consensus 427 ~~-----~~yLGRPW~~ysrvVf~~t~l~~ 451 (529)
T PLN02170 427 ES-----MTYLGRPWKEYSRTVVMQSFIDG 451 (529)
T ss_pred CC-----ceeeeCCCCCCceEEEEecccCC
Confidence 54 22223333445566677766665
No 50
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.25 E-value=0.057 Score=56.27 Aligned_cols=214 Identities=14% Similarity=0.130 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHHhh---cCCCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEE
Q 015254 37 ISQALRDAWKEACA---ATTPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTV 113 (410)
Q Consensus 37 dt~aiq~Ai~~a~~---~~~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I 113 (410)
|-.-||+||+++.. +..--+|+|.+|+|.=. +.++. .|.+++|.++|. ....|
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~-~k~~i~l~G~g~----------------------~~TvI 289 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRGIYQEN-INVRL-NNDDIMLVGDGM----------------------RSTII 289 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCCEeEEE-EEecC-CCCcEEEEEcCC----------------------CCeEE
Confidence 45568999865432 12235788999999743 33321 125777777651 12222
Q ss_pred EeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCC
Q 015254 114 SGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEE 188 (410)
Q Consensus 114 ~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~ 188 (410)
+|.-.. +.+ | .. .+.. .+. ...+++..+|++|+|... ..+.+. ..+...+.+|+|.+..|
T Consensus 290 t~~~~~-~~~--~--------~T-~~Sa--T~~-v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QD 354 (539)
T PLN02995 290 TGGRSV-KGG--Y--------TT-YNSA--TAG-IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQD 354 (539)
T ss_pred EeCCcc-CCC--C--------cc-cceE--EEE-EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccc
Confidence 221000 000 0 00 1111 233 457889999999998642 234433 56889999999998665
Q ss_pred CCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC-----ceEEEeecCccCCCCCEEEEEEEceEE
Q 015254 189 SLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPG-----HGISVGSLGKYQNEQPVVGIRVRECNI 263 (410)
Q Consensus 189 ~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~-----~Gi~igs~g~~~~~~~v~nv~i~n~~~ 263 (410)
.... .+..-..++|.|...=|-| ++ ....++++|++..- ..-.|-..++ .....-..+.|.||++
T Consensus 355 TLy~------~~~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c~i 424 (539)
T PLN02995 355 TLMV------HSQRQFYRECYIYGTVDFI-FG--NAAAVFQNCIILPRRPLKGQANVITAQGR-ADPFQNTGISIHNSRI 424 (539)
T ss_pred hhcc------CCCceEEEeeEEeeccceE-ec--ccceEEeccEEEEecCCCCCcceEecCCC-CCCCCCceEEEEeeEE
Confidence 3222 1245688899998654533 22 24788888887531 1112211121 1223346788999999
Q ss_pred ecCCeeE----EEEecCCCCCcceeeEEEEeEEEecCCcc
Q 015254 264 SNTSNGV----RIKTWPASYPGTASDLHFEDIKMNNVSNP 299 (410)
Q Consensus 264 ~~~~~gi----~iks~~g~~~g~v~nI~~~ni~~~~~~~~ 299 (410)
....... ..+.+=|+....-..+.|-+..+.+.-.|
T Consensus 425 ~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~I~p 464 (539)
T PLN02995 425 LPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNVVSP 464 (539)
T ss_pred ecCCcccccccccceeccCCCCCCcceEEEeccccCcccc
Confidence 8754211 12333344445556678888777664333
No 51
>PLN02916 pectinesterase family protein
Probab=97.22 E-value=0.082 Score=54.35 Aligned_cols=141 Identities=15% Similarity=0.131 Sum_probs=80.2
Q ss_pred EEEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEec
Q 015254 146 SFNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIG 220 (410)
Q Consensus 146 ~~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~ 220 (410)
.....+++..+|++|+|... ..+.+. .++...+.+|.+....|. +-. .+..-..++|.|...=|-| +
T Consensus 272 ~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDT-----Ly~-~~~Rqyy~~C~I~GtVDFI-F- 343 (502)
T PLN02916 272 FGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDT-----LFV-HSLRQFYRDCHIYGTIDFI-F- 343 (502)
T ss_pred EEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCce-----eEe-CCCCEEEEecEEeccccee-c-
Confidence 33457789999999998632 233333 467888899998886542 221 2345677888888654433 1
Q ss_pred CCceeEEEEeEEEcCC-----ceEEEeecCccCCCCCEEEEEEEceEEecCCeeE----EEEecCCCCCcceeeEEEEeE
Q 015254 221 DGTQQMEINKIDCGPG-----HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGV----RIKTWPASYPGTASDLHFEDI 291 (410)
Q Consensus 221 s~~~nv~I~n~~~~~~-----~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi----~iks~~g~~~g~v~nI~~~ni 291 (410)
|.-...++||.+..- ..-.|-..+. .....-..+.|.||++....... ..+++=|+....-..+.|.+.
T Consensus 344 -G~a~avFq~C~I~~~~~~~~~~g~ITAq~r-~~~~~~tGfvf~~C~it~~~~~~~~~g~~~~yLGRPW~~ysrvVf~~t 421 (502)
T PLN02916 344 -GDAAVVFQNCDIFVRRPMDHQGNMITAQGR-DDPHENTGISIQHSRVRASPEFEAVKGRFKSFLGRPWKKYSRTVFLKT 421 (502)
T ss_pred -cCceEEEecCEEEEecCCCCCcceEEecCC-CCCCCCcEEEEEeeEEecCccccccccccceEeecCCCCCceEEEEec
Confidence 234778888877421 1112211111 12233457888888887754211 122333333445567777777
Q ss_pred EEecC
Q 015254 292 KMNNV 296 (410)
Q Consensus 292 ~~~~~ 296 (410)
.|.+.
T Consensus 422 ~~~~~ 426 (502)
T PLN02916 422 DLDGL 426 (502)
T ss_pred ccCCe
Confidence 76653
No 52
>PLN02314 pectinesterase
Probab=97.19 E-value=0.075 Score=56.06 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=82.9
Q ss_pred EeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCC
Q 015254 148 NAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDG 222 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~ 222 (410)
...+++..+|++|+|... ..+.+. ..+...+.+|.+.+..|... . .+..-..+||.|...=|-| + |
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy-----~-~~~rq~y~~C~I~GtvDFI-F--G 432 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLY-----A-HSNRQFYRDCDITGTIDFI-F--G 432 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchhe-----e-CCCCEEEEeeEEEecccee-c--c
Confidence 467889999999998632 233333 56788899999998655322 1 2345688889888654433 2 2
Q ss_pred ceeEEEEeEEEcCC-----ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecC
Q 015254 223 TQQMEINKIDCGPG-----HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 223 ~~nv~I~n~~~~~~-----~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~ 296 (410)
.-...++||.+..- ..-.|-..++ .+...-..+.|.||++..... +..+++=|+....-..+.|.+..+.+.
T Consensus 433 ~a~avf~~c~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c~i~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 433 NAAVVFQNCNIQPRQPLPNQFNTITAQGK-KDPNQNTGISIQRCTISAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSF 509 (586)
T ss_pred CceeeeeccEEEEecCCCCCCceEecCCC-CCCCCCCEEEEEeeEEecCCc-ccccccccCCCCCCceEEEEecccCCc
Confidence 34788888888531 1112211221 123444678899999987552 233344444444456677777777664
No 53
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.16 E-value=0.018 Score=55.70 Aligned_cols=205 Identities=17% Similarity=0.227 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhcC-CCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEeC
Q 015254 38 SQALRDAWKEACAAT-TPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGG 116 (410)
Q Consensus 38 t~aiq~Ai~~a~~~~-~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G~ 116 (410)
=..||+||+++.... .--+|+|.||+|+=. |.++. .|.+++|.+++. ....|.+.
T Consensus 12 f~TIq~Aida~p~~~~~~~~I~I~~G~Y~E~-V~i~~-~k~~v~l~G~~~----------------------~~tiI~~~ 67 (298)
T PF01095_consen 12 FTTIQAAIDAAPDNNTSRYTIFIKPGTYREK-VTIPR-SKPNVTLIGEGR----------------------DKTIITGN 67 (298)
T ss_dssp BSSHHHHHHHS-SSSSS-EEEEE-SEEEE---EEE-S-TSTTEEEEES-T----------------------TTEEEEE-
T ss_pred ccCHHHHHHhchhcCCceEEEEEeCeeEccc-cEecc-ccceEEEEecCC----------------------CceEEEEe
Confidence 445899987644332 124899999999733 44431 014677666531 12223331
Q ss_pred e-EecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCc------ceEEEeCeeeEEEEeEEEECCCCC
Q 015254 117 G-TFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQ------FHINVIGAKNFTFQRVTVTAPEES 189 (410)
Q Consensus 117 G-~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~------~~i~~~~~~nv~i~n~~i~~~~~~ 189 (410)
. ..++. . . .+.. .+.+ ..+++.+++|+|+|... -.+.+ ..+...+.+|.+.+..|.
T Consensus 68 ~~~~~~~--~----------t-~~sa--T~~v-~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDT 130 (298)
T PF01095_consen 68 DNAADGG--G----------T-FRSA--TFSV-NADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDT 130 (298)
T ss_dssp --TTTB---H----------C-GGC---SEEE--STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-
T ss_pred ccccccc--c----------c-cccc--cccc-cccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccce
Confidence 0 00100 0 0 1112 2333 47899999999998632 12332 456778888888875432
Q ss_pred CCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcC-----CceEEEeecCccCCCCCEEEEEEEceEEe
Q 015254 190 LNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGP-----GHGISVGSLGKYQNEQPVVGIRVRECNIS 264 (410)
Q Consensus 190 ~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~-----~~Gi~igs~g~~~~~~~v~nv~i~n~~~~ 264 (410)
+-. ...+..++||.|...-|-|.= . ....+++|++.. +..-.|-..+. .....-...+|.||++.
T Consensus 131 -----L~~-~~~r~y~~~c~IeG~vDFIfG-~--~~a~f~~c~i~~~~~~~~~~~~ItA~~r-~~~~~~~G~vF~~c~i~ 200 (298)
T PF01095_consen 131 -----LYA-NGGRQYFKNCYIEGNVDFIFG-N--GTAVFENCTIHSRRPGGGQGGYITAQGR-TSPSQKSGFVFDNCTIT 200 (298)
T ss_dssp -----EEE--SSEEEEES-EEEESEEEEEE-S--SEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-EEE
T ss_pred -----eee-ccceeEEEeeEEEecCcEEEC-C--eeEEeeeeEEEEeccccccceeEEeCCc-cccCCCeEEEEEEeEEe
Confidence 222 234567777888765554422 2 256677777742 11112211111 12233456778888887
Q ss_pred cCCe--------eEEEEecCCCCCcceeeEEEEeEEEecCC
Q 015254 265 NTSN--------GVRIKTWPASYPGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 265 ~~~~--------gi~iks~~g~~~g~v~nI~~~ni~~~~~~ 297 (410)
.... ...+. +..+.-..+.|.|..|.+.-
T Consensus 201 ~~~~~~~~~~~~~~yLG----RpW~~~s~vvf~~t~m~~~I 237 (298)
T PF01095_consen 201 GDSGVSPSYSDGSVYLG----RPWGPYSRVVFINTYMDDHI 237 (298)
T ss_dssp ESTTTCGGCCCSTEEEE------SSEETEEEEES-EE-TTE
T ss_pred cCccccccccceeEEec----CcccceeeEEEEccccCCee
Confidence 6431 12221 11234456777777777643
No 54
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.16 E-value=0.065 Score=55.77 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=78.4
Q ss_pred EEEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEec
Q 015254 146 SFNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIG 220 (410)
Q Consensus 146 ~~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~ 220 (410)
.....+++..+|++|+|... ..+.+. ..+.+.+.+|.|.+..|.... .+..-..+||.|...=|-| ++
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~------~~~rqyy~~C~I~GtVDFI-FG 386 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYA------HSLRQFYRECEIYGTIDFI-FG 386 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeccccccee------cCCceEEEeeEEecccceE-cc
Confidence 34568889999999998732 233333 467888889988886553221 2245678888888654433 22
Q ss_pred CCceeEEEEeEEEcCC-----ceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEec
Q 015254 221 DGTQQMEINKIDCGPG-----HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNN 295 (410)
Q Consensus 221 s~~~nv~I~n~~~~~~-----~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~ 295 (410)
.-...++||.+..- ..-.|-..++. ....-..+.|.||++.... ...+ |+....-..+.|.+..+.+
T Consensus 387 --~a~avfq~C~i~~r~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~-~~yL----GRPW~~~sr~v~~~t~l~~ 458 (537)
T PLN02506 387 --NGAAVLQNCKIYTRVPLPLQKVTITAQGRK-SPHQSTGFSIQDSYVLATQ-PTYL----GRPWKQYSRTVFMNTYMSQ 458 (537)
T ss_pred --CceeEEeccEEEEccCCCCCCceEEccCCC-CCCCCcEEEEEcCEEccCC-ceEE----ecCCCCCceEEEEecCCCC
Confidence 24688888887521 11122111211 2223456788888887643 2222 3333445666777766665
No 55
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.15 E-value=0.12 Score=53.56 Aligned_cols=209 Identities=15% Similarity=0.140 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHhhcC-CCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEe
Q 015254 37 ISQALRDAWKEACAAT-TPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSG 115 (410)
Q Consensus 37 dt~aiq~Ai~~a~~~~-~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G 115 (410)
+=..||+||+++.... .--+|+|.+|+|.= .+.++. .|.+++|.++|. +...|++
T Consensus 217 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~-~k~~i~l~G~g~----------------------~~TiIt~ 272 (520)
T PLN02201 217 NFTTIMDAVLAAPDYSTKRYVIYIKKGVYLE-NVEIKK-KKWNIMMVGDGI----------------------DATVITG 272 (520)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCceeEE-EEEecC-CCceEEEEecCC----------------------CCcEEEe
Confidence 4556888886543322 23589999999973 334431 024666666541 1122222
Q ss_pred Ce-EecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCC
Q 015254 116 GG-TFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEES 189 (410)
Q Consensus 116 ~G-~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 189 (410)
.. ..||.+ . .+. .-.....+++..+|++|+|... ..+.+. ..+...+.+|.+....|.
T Consensus 273 ~~~~~~g~~------------T-~~S---AT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDT 336 (520)
T PLN02201 273 NRSFIDGWT------------T-FRS---ATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDT 336 (520)
T ss_pred CCccCCCCc------------c-cce---EEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCe
Confidence 10 011100 0 111 2333457889999999998632 233333 467888889998875542
Q ss_pred CCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC------ceEEEeecCccCCCCCEEEEEEEceEE
Q 015254 190 LNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPG------HGISVGSLGKYQNEQPVVGIRVRECNI 263 (410)
Q Consensus 190 ~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~------~Gi~igs~g~~~~~~~v~nv~i~n~~~ 263 (410)
+-. ....-..++|.|...=|-| + |.-...++||++..- .| .|-..++ .+...-..+.|.||++
T Consensus 337 -----Ly~-~~~Rqyy~~C~I~GtVDFI-F--G~a~avf~~C~i~~~~~~~~~~~-~iTAq~r-~~~~~~~Gfvf~~C~i 405 (520)
T PLN02201 337 -----LYT-HTMRQFYRECRITGTVDFI-F--GDATAVFQNCQILAKKGLPNQKN-TITAQGR-KDPNQPTGFSIQFSNI 405 (520)
T ss_pred -----eEe-CCCCEEEEeeEEeecccEE-e--cCceEEEEccEEEEecCCCCCCc-eEEecCC-CCCCCCcEEEEEeeEE
Confidence 222 2344677888888654433 2 234788888877531 12 1211111 1223345678888888
Q ss_pred ecCCeeE----EEEecCCCCCcceeeEEEEeEEEecC
Q 015254 264 SNTSNGV----RIKTWPASYPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 264 ~~~~~gi----~iks~~g~~~g~v~nI~~~ni~~~~~ 296 (410)
....... ..+.+=|+....-..+.|.+..|.+.
T Consensus 406 t~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~l~~~ 442 (520)
T PLN02201 406 SADTDLLPYLNTTATYLGRPWKLYSRTVFMQNYMSDA 442 (520)
T ss_pred ecCccccccccccceEeecCCCCCceEEEEecCcCCe
Confidence 7643211 11223343345556777777776653
No 56
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.13 E-value=0.088 Score=55.25 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=83.2
Q ss_pred EeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCC
Q 015254 148 NAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDG 222 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~ 222 (410)
...+++..+|++|+|... ..+.+. ..+...+.+|+|.+..|....+ +..-..+||.|...=|-| + |
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~------~~rq~y~~C~I~GtvDFI-F--G 412 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAH------AQRQFYRECNIYGTVDFI-F--G 412 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccC------CCceEEEeeEEeccccee-e--c
Confidence 346789999999998642 233333 5788999999999866532221 345678899998654433 2 2
Q ss_pred ceeEEEEeEEEcC-----CceEEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecC
Q 015254 223 TQQMEINKIDCGP-----GHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 223 ~~nv~I~n~~~~~-----~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~ 296 (410)
.-...++||.+.. +..-.|-..|+ .+...-..+.|.||++......-..+++=|+....-..+.|.+..+.+.
T Consensus 413 ~a~avfq~c~i~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr~v~~~s~~~~~ 490 (565)
T PLN02468 413 NSAVVFQNCNILPRRPMKGQQNTITAQGR-TDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYSTTVIMHSMMGSL 490 (565)
T ss_pred cceEEEeccEEEEecCCCCCCceEEecCC-CCCCCCceEEEEccEEecCCCccccceeeecCCCCCceEEEEecccCCe
Confidence 3578888888842 11112211111 1233446788999999875432223334344444555677777776653
No 57
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.12 E-value=0.089 Score=55.48 Aligned_cols=138 Identities=12% Similarity=0.100 Sum_probs=84.3
Q ss_pred EeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCC
Q 015254 148 NAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDG 222 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~ 222 (410)
...+++..+|++|+|... ..+.+. .++...+.+|.|.+..|.... ....-.++||.|...=|-| + |
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~------~~~Rqyy~~C~I~GtVDFI-F--G 439 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYA------QTHRQFYRSCVITGTIDFI-F--G 439 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeeccccccc------CCCcEEEEeeEEEeeccEE-e--c
Confidence 467899999999999632 233333 578899999999986653221 2345788999998755533 2 2
Q ss_pred ceeEEEEeEEEcCC------ceEEEeecCccCCCCCEEEEEEEceEEecCCeeE----EEEecCCCCCcceeeEEEEeEE
Q 015254 223 TQQMEINKIDCGPG------HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGV----RIKTWPASYPGTASDLHFEDIK 292 (410)
Q Consensus 223 ~~nv~I~n~~~~~~------~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi----~iks~~g~~~g~v~nI~~~ni~ 292 (410)
.-...++||.+..- .| .|-..+. .+...-..+.|.||++....... ..+++=|+....-..+.|.+..
T Consensus 440 ~a~avf~~C~i~~~~~~~~~~~-~iTAq~r-~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~ 517 (596)
T PLN02745 440 DAAAIFQNCLIFVRKPLPNQQN-TVTAQGR-VDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMEST 517 (596)
T ss_pred ceeEEEEecEEEEecCCCCCCc-eEEecCC-CCCCCCceEEEEeeEEecCccccccccccceeccCCCCCCccEEEEecc
Confidence 35888889988531 12 2211111 12234467889999998754211 1233444444556677777777
Q ss_pred EecC
Q 015254 293 MNNV 296 (410)
Q Consensus 293 ~~~~ 296 (410)
+.+.
T Consensus 518 l~~~ 521 (596)
T PLN02745 518 IEDV 521 (596)
T ss_pred cCCe
Confidence 6653
No 58
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.07 E-value=0.12 Score=54.26 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=82.0
Q ss_pred EeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCC
Q 015254 148 NAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDG 222 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~ 222 (410)
...+++..+|++|+|... ..+.+. ..+...+.+|.|.+..|. +-. .+..-.+++|.|...=|-| .|
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDT-----Ly~-~~~Rqyy~~C~I~GtVDFI---FG 407 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDT-----LYT-HSLRQFYRECDIYGTVDFI---FG 407 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcc-----eEE-CCCCEEEEeeEEeccccee---cc
Confidence 346899999999999632 233333 567889999999986553 222 2345688999998654533 22
Q ss_pred ceeEEEEeEEEcCC------ceEEEeecCccCCCCCEEEEEEEceEEecCCeeE----EEEecCCCCCcceeeEEEEeEE
Q 015254 223 TQQMEINKIDCGPG------HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGV----RIKTWPASYPGTASDLHFEDIK 292 (410)
Q Consensus 223 ~~nv~I~n~~~~~~------~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi----~iks~~g~~~g~v~nI~~~ni~ 292 (410)
.-...++||.+..- .+ .|-..++ .+...-..+.|.||++....... ..+++=|+....-..+.|.+..
T Consensus 408 ~a~avfq~C~i~~~~~~~~~~~-~iTAq~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~ 485 (566)
T PLN02713 408 NAAVVFQNCNLYPRLPMQGQFN-TITAQGR-TDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSY 485 (566)
T ss_pred cceEEEeccEEEEecCCCCCcc-eeeecCC-CCCCCCCEEEEEcCEEecCCcccccccccceeeecCCCCcceEEEEecc
Confidence 35788889988531 12 1211111 12233467889999998754211 1223333334445667777777
Q ss_pred EecC
Q 015254 293 MNNV 296 (410)
Q Consensus 293 ~~~~ 296 (410)
|.+.
T Consensus 486 ~~~~ 489 (566)
T PLN02713 486 IDGL 489 (566)
T ss_pred cCCe
Confidence 6653
No 59
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.01 E-value=0.13 Score=54.14 Aligned_cols=209 Identities=17% Similarity=0.179 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHhhcC-CCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEe
Q 015254 37 ISQALRDAWKEACAAT-TPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSG 115 (410)
Q Consensus 37 dt~aiq~Ai~~a~~~~-~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G 115 (410)
|-..||+|++++.... .--+|||.+|+|.=. +.++. .|.+++|.++|. ....|+|
T Consensus 286 ~f~TI~~Av~a~p~~~~~r~vI~ik~GvY~E~-V~i~~-~k~ni~l~Gdg~----------------------~~TiIt~ 341 (587)
T PLN02313 286 DFTTVAAAVAAAPEKSNKRFVIHIKAGVYREN-VEVTK-KKKNIMFLGDGR----------------------GKTIITG 341 (587)
T ss_pred CCccHHHHHHhccccCCceEEEEEeCceeEEE-EEeCC-CCCeEEEEecCC----------------------CccEEEe
Confidence 4556888886544322 224889999999742 23321 024666666541 1222333
Q ss_pred Ce-EecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCC
Q 015254 116 GG-TFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEES 189 (410)
Q Consensus 116 ~G-~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 189 (410)
.. ..||. .- .+. .-.....+++..+|++|+|... ..+.+. .++...+.+|.|.+..|.
T Consensus 342 ~~~~~~g~--~t-----------~~s---at~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDT 405 (587)
T PLN02313 342 SRNVVDGS--TT-----------FHS---ATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDT 405 (587)
T ss_pred CCcccCCC--Cc-----------eee---EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccch
Confidence 10 11111 10 111 2233457889999999998632 233333 568889999999986553
Q ss_pred CCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC---ce--EEEeecCccCCCCCEEEEEEEceEEe
Q 015254 190 LNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPG---HG--ISVGSLGKYQNEQPVVGIRVRECNIS 264 (410)
Q Consensus 190 ~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~---~G--i~igs~g~~~~~~~v~nv~i~n~~~~ 264 (410)
... .+..-..++|.|...=|-|- |.....++||.+..- .| -.|-..|+ .+...-..+.|.||++.
T Consensus 406 Ly~------~~~rq~y~~c~I~GtvDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTAqgr-~~~~~~tG~v~~~c~i~ 475 (587)
T PLN02313 406 LYV------HSNRQFFVKCHITGTVDFIF---GNAAAVLQDCDINARRPNSGQKNMVTAQGR-SDPNQNTGIVIQNCRIG 475 (587)
T ss_pred hcc------CCCcEEEEeeEEeeccceec---cceeEEEEccEEEEecCCCCCcceEEecCC-CCCCCCceEEEEecEEe
Confidence 221 23455888999987555432 235788889888521 11 12212221 12334467889999998
Q ss_pred cCCeeE----EEEecCCCCCcceeeEEEEeEEEec
Q 015254 265 NTSNGV----RIKTWPASYPGTASDLHFEDIKMNN 295 (410)
Q Consensus 265 ~~~~gi----~iks~~g~~~g~v~nI~~~ni~~~~ 295 (410)
....-. .++++=|+....-..+.|-+..+.+
T Consensus 476 ~~~~~~~~~~~~~~yLGRPW~~ysr~v~~~s~i~~ 510 (587)
T PLN02313 476 GTSDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISD 510 (587)
T ss_pred cCCccccccccchhhccCCCCCCccEEEEecccCC
Confidence 755211 1223334434444556666666655
No 60
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.01 E-value=0.25 Score=52.06 Aligned_cols=211 Identities=15% Similarity=0.151 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHhhcC-CCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEe
Q 015254 37 ISQALRDAWKEACAAT-TPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSG 115 (410)
Q Consensus 37 dt~aiq~Ai~~a~~~~-~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G 115 (410)
|-.-||+||+++.... .--+|+|.+|+|.=..+.++. .|.+++|.++|. +...|+|
T Consensus 283 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E~~v~i~~-~k~ni~l~G~g~----------------------~~TiIt~ 339 (587)
T PLN02484 283 TFKTISEAIKKAPEHSSRRTIIYVKAGRYEENNLKVGR-KKTNLMFIGDGK----------------------GKTVITG 339 (587)
T ss_pred CcccHHHHHHhccccCCCcEEEEEeCCEEEEEEEEECC-CCceEEEEecCC----------------------CCeEEec
Confidence 3556999986544322 225789999999753344431 124666666541 1222332
Q ss_pred Ce-EecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCC
Q 015254 116 GG-TFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEES 189 (410)
Q Consensus 116 ~G-~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 189 (410)
.- ..++.+ . .+. .-.....+++..+|++|+|... ..+.+. ..+...+.+|.+....|.
T Consensus 340 ~~~~~~~~~-t------------~~s---aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDT 403 (587)
T PLN02484 340 GKSIFDNLT-T------------FHT---ASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDT 403 (587)
T ss_pred CCcccCCCc-c------------cce---EEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcc
Confidence 10 001100 0 011 2233457889999999998632 334433 568889999999986653
Q ss_pred CCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC-----ceEEEeecCccCCCCCEEEEEEEceEEe
Q 015254 190 LNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPG-----HGISVGSLGKYQNEQPVVGIRVRECNIS 264 (410)
Q Consensus 190 ~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~-----~Gi~igs~g~~~~~~~v~nv~i~n~~~~ 264 (410)
... .+..-.+++|.|...=|-| .|.-...++||.+..- ..-.|-..++ .+...-..+.|.||++.
T Consensus 404 Ly~------~~~Rqyy~~C~I~GtVDFI---FG~a~avfq~C~i~~~~~~~~~~~~ITAq~r-~~~~~~~G~vf~~c~i~ 473 (587)
T PLN02484 404 LYV------HSNRQFFRECDIYGTVDFI---FGNAAVVLQNCSIYARKPMAQQKNTITAQNR-KDPNQNTGISIHACRIL 473 (587)
T ss_pred ccc------CCCcEEEEecEEEecccee---cccceeEEeccEEEEecCCCCCceEEEecCC-CCCCCCcEEEEEeeEEe
Confidence 221 2345678889988654433 2235788888888531 1112211111 12234467889999998
Q ss_pred cCCee----EEEEecCCCCCcceeeEEEEeEEEecC
Q 015254 265 NTSNG----VRIKTWPASYPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 265 ~~~~g----i~iks~~g~~~g~v~nI~~~ni~~~~~ 296 (410)
....- -.++++=|+....-..+.|.+..|.+.
T Consensus 474 ~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~i~~~ 509 (587)
T PLN02484 474 AASDLAASKGSFPTYLGRPWKLYSRTVYMMSYMGDH 509 (587)
T ss_pred cCCccccccCccceeccCCCCCCceEEEEecccCCe
Confidence 65421 122334444445566777777777653
No 61
>PLN02197 pectinesterase
Probab=97.00 E-value=0.13 Score=54.11 Aligned_cols=140 Identities=10% Similarity=0.059 Sum_probs=82.5
Q ss_pred EeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCC
Q 015254 148 NAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDG 222 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~ 222 (410)
...+++..+|++|+|... ..+.+. .++...+.+|.|....|. +-. .+..-.++||.|...=|-| .|
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDT-----Ly~-~~~Rqyy~~C~I~GtVDFI---FG 431 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDT-----LYV-NNGRQFYRNIVVSGTVDFI---FG 431 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcc-----eEe-cCCCEEEEeeEEEeccccc---cc
Confidence 457889999999999632 334443 578899999999986553 222 2345688889988654432 22
Q ss_pred ceeEEEEeEEEcCC---ce--EEEeecCccCCCCCEEEEEEEceEEecCCee----EEEEecCCCCCcceeeEEEEeEEE
Q 015254 223 TQQMEINKIDCGPG---HG--ISVGSLGKYQNEQPVVGIRVRECNISNTSNG----VRIKTWPASYPGTASDLHFEDIKM 293 (410)
Q Consensus 223 ~~nv~I~n~~~~~~---~G--i~igs~g~~~~~~~v~nv~i~n~~~~~~~~g----i~iks~~g~~~g~v~nI~~~ni~~ 293 (410)
.....++||.+... .| -.|-..++......-..+.|.||++.....- ...+++=|+....-..+.|.+..|
T Consensus 432 ~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~ 511 (588)
T PLN02197 432 KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPWKKFSTTVIISTEI 511 (588)
T ss_pred ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCCCCCCceEEEEeccc
Confidence 34588888887521 12 1221222110023345788999999875421 123344444445566777777777
Q ss_pred ecC
Q 015254 294 NNV 296 (410)
Q Consensus 294 ~~~ 296 (410)
.+.
T Consensus 512 ~~~ 514 (588)
T PLN02197 512 GDL 514 (588)
T ss_pred CCe
Confidence 653
No 62
>PLN02304 probable pectinesterase
Probab=96.99 E-value=0.24 Score=49.15 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=45.9
Q ss_pred EeeccEEEEeEEEeccCc---------ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceE
Q 015254 148 NAITNSVVQDVTSLNSKQ---------FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCI 217 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~---------~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i 217 (410)
...+++..+||+|+|+.. ..+.+. ..+...+.+|.+....|.. -. ....-.++||.|...=|-|
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTL-----y~-~~gR~Yf~~CyIeG~VDFI 232 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTL-----HD-DRGRHYFKDCYIQGSIDFI 232 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEeccccee-----Ee-CCCCEEEEeeEEcccccEE
Confidence 346888999999988631 123332 4677777788877754422 11 1235667777777544433
Q ss_pred EecCCceeEEEEeEEEc
Q 015254 218 SIGDGTQQMEINKIDCG 234 (410)
Q Consensus 218 ~i~s~~~nv~I~n~~~~ 234 (410)
++ .-...+++|.+.
T Consensus 233 -FG--~g~A~Fe~C~I~ 246 (379)
T PLN02304 233 -FG--DARSLYENCRLI 246 (379)
T ss_pred -ec--cceEEEEccEEE
Confidence 22 235667777664
No 63
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=96.99 E-value=0.12 Score=53.83 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=81.4
Q ss_pred EeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCC
Q 015254 148 NAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDG 222 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~ 222 (410)
...+++..+|++|+|... ..+.+. .++.+.+.+|+|.+..|.... .+..-..+||.|...=|-| + |
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~------~~~Rqyy~~C~I~GtVDFI-F--G 384 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYV------HSFRQFYRECDIYGTIDYI-F--G 384 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhcc------CCCceEEEeeEEeecccee-e--c
Confidence 347899999999998632 233333 467899999999986653222 2345688889998654533 2 2
Q ss_pred ceeEEEEeEEEcCC---ce--EEEeecCccCCCCCEEEEEEEceEEecCCee----EEEEecCCCCCcceeeEEEEeEEE
Q 015254 223 TQQMEINKIDCGPG---HG--ISVGSLGKYQNEQPVVGIRVRECNISNTSNG----VRIKTWPASYPGTASDLHFEDIKM 293 (410)
Q Consensus 223 ~~nv~I~n~~~~~~---~G--i~igs~g~~~~~~~v~nv~i~n~~~~~~~~g----i~iks~~g~~~g~v~nI~~~ni~~ 293 (410)
.-...++||++..- .| -.|-..+ +.....-..+.|.||++.....- -..+++=|+....-..+.|.+..+
T Consensus 385 ~a~avfq~c~i~~~~~~~~~~~~iTA~~-r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i 463 (541)
T PLN02416 385 NAAVVFQACNIVSKMPMPGQFTVITAQS-RDTPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWRVYSRTVVLESYI 463 (541)
T ss_pred cceEEEeccEEEEecCCCCCceEEECCC-CCCCCCCCEEEEEeeEEecCCccccccccccccccCCCCCCccEEEEeccc
Confidence 34788888887531 11 1221111 11223345788999999865421 012334344344556677777776
Q ss_pred ec
Q 015254 294 NN 295 (410)
Q Consensus 294 ~~ 295 (410)
.+
T Consensus 464 ~~ 465 (541)
T PLN02416 464 DD 465 (541)
T ss_pred CC
Confidence 65
No 64
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=96.99 E-value=0.21 Score=52.13 Aligned_cols=140 Identities=15% Similarity=0.118 Sum_probs=83.0
Q ss_pred EEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecC
Q 015254 147 FNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGD 221 (410)
Q Consensus 147 ~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s 221 (410)
....+++..+|++|+|... ..+.+. .++...+.+|.|....|.... .+..-..+||.|...=|-| +
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~------~~~rq~y~~c~I~GtVDFI-F-- 379 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYV------HSLRQFYRECDIYGTVDFI-F-- 379 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCccccc------CCCcEEEEeeEEeeccceE-e--
Confidence 3456899999999999632 234433 567799999999986653221 2345688899998654543 2
Q ss_pred CceeEEEEeEEEcC-----CceEEEeecCccCCCCCEEEEEEEceEEecCCeeE----EEEecCCCCCcceeeEEEEeEE
Q 015254 222 GTQQMEINKIDCGP-----GHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGV----RIKTWPASYPGTASDLHFEDIK 292 (410)
Q Consensus 222 ~~~nv~I~n~~~~~-----~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi----~iks~~g~~~g~v~nI~~~ni~ 292 (410)
|.-...++||.+.. +..-.|-..|+ .+...-..+.|.||++.....-. ..+++=|+....-..+.|.+..
T Consensus 380 G~a~avfq~c~i~~r~~~~~~~~~iTA~~r-~~~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~ 458 (538)
T PLN03043 380 GNAAAIFQNCNLYARKPMANQKNAFTAQGR-TDPNQNTGISIINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSY 458 (538)
T ss_pred ecceeeeeccEEEEecCCCCCCceEEecCC-CCCCCCceEEEEecEEecCCcccccccccceeccCCCCCCceEEEEecc
Confidence 23478888888853 11111211111 12233457889999998754210 1223334434455667777777
Q ss_pred EecC
Q 015254 293 MNNV 296 (410)
Q Consensus 293 ~~~~ 296 (410)
|.+.
T Consensus 459 i~~~ 462 (538)
T PLN03043 459 IGDL 462 (538)
T ss_pred cCCe
Confidence 6653
No 65
>PLN02671 pectinesterase
Probab=96.99 E-value=0.14 Score=50.39 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=69.7
Q ss_pred EEEeeccEEEEeEEEeccCc--------ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCce
Q 015254 146 SFNAITNSVVQDVTSLNSKQ--------FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDC 216 (410)
Q Consensus 146 ~~~~~~nv~I~~i~i~ns~~--------~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~ 216 (410)
.....+++..+||+|+|... ..+.+. ..+.+.+.+|++....|..- . ....-.++||.|...=|-
T Consensus 149 v~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy-----~-~~gR~yf~~CyIeG~VDF 222 (359)
T PLN02671 149 VTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLL-----D-ETGSHYFYQCYIQGSVDF 222 (359)
T ss_pred EEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccE-----e-CCCcEEEEecEEEEeccE
Confidence 33456888999999988721 122222 45777788888877544221 1 123456777777764443
Q ss_pred EEecCCceeEEEEeEEEcC---Cce-EEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEE
Q 015254 217 ISIGDGTQQMEINKIDCGP---GHG-ISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIK 292 (410)
Q Consensus 217 i~i~s~~~nv~I~n~~~~~---~~G-i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~ 292 (410)
|- + .-...+++|++.. ..| |.- .+.. ....-....|.||++.+.. -..+ |+..+.-..+.|.|..
T Consensus 223 IF-G--~g~A~Fe~C~I~s~~~~~G~ITA--~~r~-~~~~~~GfvF~~C~itg~g-~vyL----GRPW~~yarvVf~~t~ 291 (359)
T PLN02671 223 IF-G--NAKSLYQDCVIQSTAKRSGAIAA--HHRD-SPTEDTGFSFVNCVINGTG-KIYL----GRAWGNYSRTVYSNCF 291 (359)
T ss_pred Ee-c--ceeEEEeccEEEEecCCCeEEEe--eccC-CCCCCccEEEEccEEccCc-cEEE----eCCCCCCceEEEEecc
Confidence 32 2 2367777777742 123 221 1110 1122345677777776532 1222 2222334566666666
Q ss_pred Eec
Q 015254 293 MNN 295 (410)
Q Consensus 293 ~~~ 295 (410)
|.+
T Consensus 292 m~~ 294 (359)
T PLN02671 292 IAD 294 (359)
T ss_pred cCC
Confidence 655
No 66
>PLN02432 putative pectinesterase
Probab=96.99 E-value=0.3 Score=47.00 Aligned_cols=131 Identities=13% Similarity=0.129 Sum_probs=66.4
Q ss_pred EeeccEEEEeEEEeccCc---ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCc
Q 015254 148 NAITNSVVQDVTSLNSKQ---FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGT 223 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~---~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~ 223 (410)
...+++..+||+|+|... ..+.+. ..+...+.+|.+....|. +-. ....-.++||.|...=|-|. + .
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDT-----Ly~-~~gr~yf~~c~I~G~VDFIF-G--~ 161 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDT-----LLD-DTGRHYYRNCYIEGATDFIC-G--N 161 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccce-----eEE-CCCCEEEEeCEEEecccEEe-c--C
Confidence 346789999999988632 122222 456777777777764432 111 12345677777775444332 2 2
Q ss_pred eeEEEEeEEEcC--C-ce-EEEeecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEec
Q 015254 224 QQMEINKIDCGP--G-HG-ISVGSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNN 295 (410)
Q Consensus 224 ~nv~I~n~~~~~--~-~G-i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~ 295 (410)
-...+++|++.. . .| |.- .+. .....-....|.||++.... .. +=|+..+.-..+.|.|..|.+
T Consensus 162 g~a~Fe~c~i~s~~~~~g~itA--~~r-~~~~~~~Gfvf~~c~itg~g-~~----yLGRpW~~~srvvf~~t~l~~ 229 (293)
T PLN02432 162 AASLFEKCHLHSLSPNNGAITA--QQR-TSASENTGFTFLGCKLTGAG-TT----YLGRPWGPYSRVVFALSYMSS 229 (293)
T ss_pred ceEEEEeeEEEEecCCCCeEEe--cCC-CCCCCCceEEEEeeEEcccc-hh----hccCCCCCccEEEEEecccCC
Confidence 356677776642 1 23 211 110 01122235667777776432 11 122223344566666666554
No 67
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.97 E-value=0.24 Score=50.85 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=81.2
Q ss_pred EeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCC
Q 015254 148 NAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDG 222 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~ 222 (410)
...+++..+|++|+|... ..+.+. .++...+.+|.|....|.. -. .+..-.+++|.|...=|-|- |
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTL-----y~-~~~RqyyrdC~I~GtVDFIF---G 351 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDAL-----YP-HRDRQFYRECFITGTVDFIC---G 351 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcce-----ee-CCCCEEEEeeEEeeccceEe---c
Confidence 457788999999998632 234433 4688899999999865532 11 23467888898886545432 2
Q ss_pred ceeEEEEeEEEcC-----CceEEEeecCccCCCCCEEEEEEEceEEecCCeeE----EEEecCCCCCcceeeEEEEeEEE
Q 015254 223 TQQMEINKIDCGP-----GHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGV----RIKTWPASYPGTASDLHFEDIKM 293 (410)
Q Consensus 223 ~~nv~I~n~~~~~-----~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi----~iks~~g~~~g~v~nI~~~ni~~ 293 (410)
.-...++||.+.. +..-.|-..++ .....-..+.|.||++....... ..+++=|+....-..+.|-+..+
T Consensus 352 ~a~avFq~C~I~sr~~~~~~~~~ITAq~R-~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i 430 (509)
T PLN02488 352 NAAAVFQFCQIVARQPMMGQSNVITAQSR-ESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSFI 430 (509)
T ss_pred ceEEEEEccEEEEecCCCCCCEEEEeCCC-CCCCCCcEEEEEeeEEecCCcccccccccceeecCCCCCCccEEEEeccC
Confidence 3578888888853 11112322221 12233456889999988754211 12334344344455666666666
Q ss_pred ec
Q 015254 294 NN 295 (410)
Q Consensus 294 ~~ 295 (410)
.+
T Consensus 431 ~~ 432 (509)
T PLN02488 431 GD 432 (509)
T ss_pred CC
Confidence 55
No 68
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.96 E-value=0.11 Score=51.43 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=80.9
Q ss_pred EeecCCCcCCchhHHHHHHHHHHHhhcCCCcEEEEcCce-EEee-eeEecCCCCccEEEEEeeEEEeeCCccCccCCCcc
Q 015254 25 DVTKHGAKQNADISQALRDAWKEACAATTPSKVLIPQGT-YQLS-PVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSW 102 (410)
Q Consensus 25 ~v~d~Ga~gdtDdt~aiq~Ai~~a~~~~~g~~v~~P~G~-Y~i~-~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~ 102 (410)
.|+.|-..++.|-.+||+ . ...|++-||. |.+. ++.++ +...|.+.|+......+. +..
T Consensus 45 qvkt~~~~P~eDle~~I~----~------haKVaL~Pg~~Y~i~~~V~I~----~~cYIiGnGA~V~v~~~~-----~~~ 105 (386)
T PF01696_consen 45 QVKTYWMEPGEDLEEAIR----Q------HAKVALRPGAVYVIRKPVNIR----SCCYIIGNGATVRVNGPD-----RVA 105 (386)
T ss_pred eEEEEEcCCCcCHHHHHH----h------cCEEEeCCCCEEEEeeeEEec----ceEEEECCCEEEEEeCCC-----Cce
Confidence 455566666655555443 2 2478887775 9985 99998 678888776543321111 000
Q ss_pred EEEEeeeeEEEEeCeEecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccC-cceEEEeCeeeEEEEeE
Q 015254 103 VSFNKIEHLTVSGGGTFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSK-QFHINVIGAKNFTFQRV 181 (410)
Q Consensus 103 i~~~~~~nv~I~G~G~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~-~~~i~~~~~~nv~i~n~ 181 (410)
|... - ....|. +.+-.++++.|+.+...+ ..++-+....++.+.++
T Consensus 106 f~v~--------~--------------------~~~~P~-----V~gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC 152 (386)
T PF01696_consen 106 FRVC--------M--------------------QSMGPG-----VVGMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGC 152 (386)
T ss_pred EEEE--------c--------------------CCCCCe-----EeeeeeeEEEEEEEecCCccceeEEEecceEEEEee
Confidence 1111 0 001122 222335666666666555 45566666667777777
Q ss_pred EEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC
Q 015254 182 TVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPG 236 (410)
Q Consensus 182 ~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~ 236 (410)
.+.+. +...+ .......|+.|.|..---||.-. +...+.|++|.|...
T Consensus 153 ~F~gf----~g~cl--~~~~~~~VrGC~F~~C~~gi~~~-~~~~lsVk~C~FekC 200 (386)
T PF01696_consen 153 SFFGF----HGTCL--ESWAGGEVRGCTFYGCWKGIVSR-GKSKLSVKKCVFEKC 200 (386)
T ss_pred EEecC----cceeE--EEcCCcEEeeeEEEEEEEEeecC-CcceEEeeheeeehe
Confidence 77663 22223 22346667777775533333222 234666666666544
No 69
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=96.94 E-value=0.13 Score=54.76 Aligned_cols=139 Identities=10% Similarity=0.099 Sum_probs=87.1
Q ss_pred EeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCC
Q 015254 148 NAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDG 222 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~ 222 (410)
...+++..+||+|+|... ..+.+. ..+...+.+|+|....|.... ...+-.+++|.|...=|-| + |
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~------~~~Rqyy~~C~I~GtVDFI-F--G 404 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYA------HSHRQFYRDCTISGTIDFL-F--G 404 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhcc------CCCcEEEEeCEEEEeccEE-e--c
Confidence 457899999999999642 334443 578999999999986653221 2346788999998654543 2 2
Q ss_pred ceeEEEEeEEEcCC-----ceEEEeecCccCCCCCEEEEEEEceEEecCCeeE----EEEecCCCCCcceeeEEEEeEEE
Q 015254 223 TQQMEINKIDCGPG-----HGISVGSLGKYQNEQPVVGIRVRECNISNTSNGV----RIKTWPASYPGTASDLHFEDIKM 293 (410)
Q Consensus 223 ~~nv~I~n~~~~~~-----~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi----~iks~~g~~~g~v~nI~~~ni~~ 293 (410)
....+++||.+..- ..-.|-..|+ .+...-..+.|.||++.....-+ ..+.+=|+.+..-..+.|.+..|
T Consensus 405 ~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l 483 (670)
T PLN02217 405 DAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFI 483 (670)
T ss_pred CceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEeccc
Confidence 35788999988631 1122322221 12234567899999998864211 12233344445567788888777
Q ss_pred ecC
Q 015254 294 NNV 296 (410)
Q Consensus 294 ~~~ 296 (410)
.+.
T Consensus 484 ~~~ 486 (670)
T PLN02217 484 PDF 486 (670)
T ss_pred CCe
Confidence 654
No 70
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.90 E-value=0.2 Score=52.36 Aligned_cols=210 Identities=18% Similarity=0.172 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHhhcCC-CcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEe
Q 015254 37 ISQALRDAWKEACAATT-PSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSG 115 (410)
Q Consensus 37 dt~aiq~Ai~~a~~~~~-g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G 115 (410)
|=..||+||+++..... --+|+|.+|+|.- .+.++- .|.+++|.++|. +...|+|
T Consensus 247 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~E-~V~i~~-~k~~i~l~G~g~----------------------~~TiIt~ 302 (548)
T PLN02301 247 KYKTVKEAVASAPDNSKTRYVIYVKKGTYKE-NVEIGK-KKKNLMLVGDGM----------------------DSTIITG 302 (548)
T ss_pred CcccHHHHHHhhhhcCCceEEEEEeCceeeE-EEEecC-CCceEEEEecCC----------------------CCcEEEe
Confidence 45668888866544321 2478999999974 233321 124666666641 1112222
Q ss_pred Ce-EecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCC
Q 015254 116 GG-TFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEES 189 (410)
Q Consensus 116 ~G-~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 189 (410)
.. ..||.+ . .+. .-.....+++..+|++|+|... ..+.+. .++...+.+|+|.+..|.
T Consensus 303 ~~~~~dg~~-T------------~~S---aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDT 366 (548)
T PLN02301 303 SLNVIDGST-T------------FRS---ATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDT 366 (548)
T ss_pred CCccCCCCC-c------------eee---EEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeecccc
Confidence 10 011110 0 111 2333457889999999998632 234333 568899999999986653
Q ss_pred CCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCC-----ceEEEeecCccCCCCCEEEEEEEceEEe
Q 015254 190 LNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPG-----HGISVGSLGKYQNEQPVVGIRVRECNIS 264 (410)
Q Consensus 190 ~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~-----~Gi~igs~g~~~~~~~v~nv~i~n~~~~ 264 (410)
.. . .+..-..+||.|...=|-| .|.-...++||.+..- ..-.|-..|+ .+...-..+.|.||++.
T Consensus 367 Ly-----~-~~~Rqyy~~C~I~GtVDFI---FG~a~avfq~c~i~~~~~~~~~~~~iTAqgr-~~~~~~tG~vf~~c~i~ 436 (548)
T PLN02301 367 LY-----A-HSLRQFYRDSYITGTVDFI---FGNAAVVFQNCKIVARKPMAGQKNMVTAQGR-TDPNQNTGISIQKCDII 436 (548)
T ss_pred ce-----e-cCCcEEEEeeEEEecccee---cccceeEEeccEEEEecCCCCCCceEEecCC-CCCCCCCEEEEEeeEEe
Confidence 22 1 2345688899998754543 2235788888888531 1111211111 12334467889999998
Q ss_pred cCCeeE----EEEecCCCCCcceeeEEEEeEEEecC
Q 015254 265 NTSNGV----RIKTWPASYPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 265 ~~~~gi----~iks~~g~~~g~v~nI~~~ni~~~~~ 296 (410)
....-. ..+++=|+....-..+.|.+..+.+.
T Consensus 437 ~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~l~~~ 472 (548)
T PLN02301 437 ASSDLEPVKGSFKTYLGRPWKEYSRTVVMQSYIDDH 472 (548)
T ss_pred cCccccccccccceeeecCCCCCceEEEEecccCCe
Confidence 754211 12233344344556667767666653
No 71
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.88 E-value=0.013 Score=53.35 Aligned_cols=118 Identities=14% Similarity=0.165 Sum_probs=74.2
Q ss_pred EEE-EeeccEEEEeEEEecc---------------CcceEEEeCeeeEEEEeEEEECCCCC---CCCCc-eEee-ccccE
Q 015254 145 LSF-NAITNSVVQDVTSLNS---------------KQFHINVIGAKNFTFQRVTVTAPEES---LNTDG-IHVG-RSSGV 203 (410)
Q Consensus 145 i~~-~~~~nv~I~~i~i~ns---------------~~~~i~~~~~~nv~i~n~~i~~~~~~---~n~DG-i~~~-~s~nv 203 (410)
+.+ .+++||.|++++++.. ...++.+..++++.|++|++...... ...|| +++. .+++|
T Consensus 39 ~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~v 118 (200)
T PF00544_consen 39 LRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNV 118 (200)
T ss_dssp EEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEE
T ss_pred EEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceE
Confidence 444 4899999999999982 44679999999999999999985211 12555 5665 48999
Q ss_pred EEEeeEEecCCceEEecCC-------ceeEEEEeEEEcCCce--EEEeecCccCCCCCEEEEEEEceEEec-CCeeEEE
Q 015254 204 TITDSKIGTGDDCISIGDG-------TQQMEINKIDCGPGHG--ISVGSLGKYQNEQPVVGIRVRECNISN-TSNGVRI 272 (410)
Q Consensus 204 ~I~n~~i~~gdD~i~i~s~-------~~nv~I~n~~~~~~~G--i~igs~g~~~~~~~v~nv~i~n~~~~~-~~~gi~i 272 (410)
+|.+|.|...+.+..+++. ..++++.++.+.+..+ =.+ ..-.+++.|+.+.+ ..+++..
T Consensus 119 TiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~----------r~G~~Hv~NN~~~~~~~y~i~~ 187 (200)
T PF00544_consen 119 TISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV----------RFGYVHVYNNYYYNWSGYAIGA 187 (200)
T ss_dssp EEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE----------CSCEEEEES-EEEEECSESEEE
T ss_pred EEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc----------cccEEEEEEeeeECCCCEEEEc
Confidence 9999999874433333331 2689999998864211 011 01247788887765 4556654
No 72
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.85 E-value=0.36 Score=50.10 Aligned_cols=210 Identities=14% Similarity=0.135 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHhhcC-CCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEe
Q 015254 37 ISQALRDAWKEACAAT-TPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSG 115 (410)
Q Consensus 37 dt~aiq~Ai~~a~~~~-~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G 115 (410)
+=.-||+||+++.... .--+|+|.+|+|. ..+.++. .|.+++|+++|. ....|++
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~-E~V~I~~-~k~~itl~G~g~----------------------~~TiIt~ 284 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGGEYF-ENVELPK-KKTMIMFIGDGI----------------------GKTVIKA 284 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCceEE-EEEEecC-CCceEEEEEcCC----------------------CCcEEEe
Confidence 3556888986544322 2247899999997 3344431 124666666542 1122222
Q ss_pred Ce-EecCCCCCCCcccccCCCCCCCCeeeeEEEEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCC
Q 015254 116 GG-TFDGQGAVAPSECEKDDYCKKRPIVSNLSFNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEES 189 (410)
Q Consensus 116 ~G-~idG~g~~~~~~~~~~~~~~~~p~~w~i~~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~ 189 (410)
.. ..||.+ . .+. .-.....+++..+|++|+|... ..+.+. ..+...+.+|.+.+..|.
T Consensus 285 ~~~~~dg~~------------T-~~S---aT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDT 348 (530)
T PLN02933 285 NRSRIDGWS------------T-FQT---ATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDT 348 (530)
T ss_pred CCccCCCCc------------c-ccc---eEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccc
Confidence 10 011100 0 112 2334457889999999998632 234443 467889999999986553
Q ss_pred CCCCceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcC-----CceEEEeecCccCCCCCEEEEEEEceEEe
Q 015254 190 LNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGP-----GHGISVGSLGKYQNEQPVVGIRVRECNIS 264 (410)
Q Consensus 190 ~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~-----~~Gi~igs~g~~~~~~~v~nv~i~n~~~~ 264 (410)
... .+..-.+++|.|...=|-| + |.....+++|.+.. +..-.|-..++ .....-..+.|.||++.
T Consensus 349 Ly~------~~~Rqyy~~C~IeGtVDFI-F--G~a~avFq~C~i~~~~~~~~~~~~iTAq~r-~~~~~~tGfvf~~C~it 418 (530)
T PLN02933 349 LYV------HSAKQFYRECDIYGTIDFI-F--GNAAVVFQNCSLYARKPNPNHKIAFTAQSR-NQSDQPTGISIISSRIL 418 (530)
T ss_pred ccc------CCCceEEEeeEEeccccee-c--cCceEEEeccEEEEeccCCCCceEEEecCC-CCCCCCceEEEEeeEEe
Confidence 221 1235688889888654433 2 23467888888742 11112211111 12233457889999988
Q ss_pred cCCeeEE----EEecCCCCCcceeeEEEEeEEEecC
Q 015254 265 NTSNGVR----IKTWPASYPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 265 ~~~~gi~----iks~~g~~~g~v~nI~~~ni~~~~~ 296 (410)
....... .+.+=|+....-..+.|.+..|.+.
T Consensus 419 ~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~s~l~~~ 454 (530)
T PLN02933 419 AAPDLIPVKENFKAYLGRPWRKYSRTVIIKSFIDDL 454 (530)
T ss_pred cCCcccccccccceEeccCCCCCceEEEEecccCCe
Confidence 7432111 1233344345556777777777653
No 73
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.82 E-value=0.32 Score=51.20 Aligned_cols=139 Identities=12% Similarity=0.155 Sum_probs=82.1
Q ss_pred EeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCC
Q 015254 148 NAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDG 222 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~ 222 (410)
...+++..+|++|+|... ..+.+. ..+...+.+|.|....|.... .+..-..++|.|...=|-| + |
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~------~~~Rqyy~~C~I~GtVDFI-F--G 414 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYV------HSHRQFFRDCTVSGTVDFI-F--G 414 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhcc------CCCcEEEEeeEEecccceE-c--c
Confidence 357889999999998642 234433 567899999999986553221 2345678899998755543 2 2
Q ss_pred ceeEEEEeEEEcC---Cce--EEEeecCccCCCCCEEEEEEEceEEecCCeeE----EEEecCCCCCcceeeEEEEeEEE
Q 015254 223 TQQMEINKIDCGP---GHG--ISVGSLGKYQNEQPVVGIRVRECNISNTSNGV----RIKTWPASYPGTASDLHFEDIKM 293 (410)
Q Consensus 223 ~~nv~I~n~~~~~---~~G--i~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi----~iks~~g~~~g~v~nI~~~ni~~ 293 (410)
.-...++||++.. ..| -.|-..++ .+...-..+.|.||++....... ..+++=|+....-..+.|.+..|
T Consensus 415 ~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRpW~~ysrvV~~~s~i 493 (572)
T PLN02990 415 DAKVVLQNCNIVVRKPMKGQSCMITAQGR-SDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWKEFSRTIIMGTTI 493 (572)
T ss_pred CceEEEEccEEEEecCCCCCceEEEeCCC-CCCCCCceEEEEeeEEecCccccccccccceEeecCCCCCceEEEEeccc
Confidence 3478888888852 111 22211121 12233457889999998754211 12233333344456677777776
Q ss_pred ecC
Q 015254 294 NNV 296 (410)
Q Consensus 294 ~~~ 296 (410)
.+.
T Consensus 494 ~~~ 496 (572)
T PLN02990 494 DDV 496 (572)
T ss_pred CCe
Confidence 653
No 74
>PLN02682 pectinesterase family protein
Probab=96.74 E-value=0.62 Score=46.18 Aligned_cols=112 Identities=9% Similarity=0.075 Sum_probs=72.5
Q ss_pred CeeeEEEEeEEEECCCC-----CCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecC
Q 015254 172 GAKNFTFQRVTVTAPEE-----SLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLG 245 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~-----~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g 245 (410)
..+++..+|++|.|... ......+.+. .++...+.+|.|....|-+..+. ..-.++||++.+.-.+-+|.
T Consensus 161 ~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~-- 236 (369)
T PLN02682 161 NSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFGN-- 236 (369)
T ss_pred ECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEecC--
Confidence 34688899999998542 1122334443 37899999999999888876665 36789999998766666654
Q ss_pred ccCCCCCEEEEEEEceEEecCC--eeEEEEecCCCCCcceeeEEEEeEEEecC
Q 015254 246 KYQNEQPVVGIRVRECNISNTS--NGVRIKTWPASYPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 246 ~~~~~~~v~nv~i~n~~~~~~~--~gi~iks~~g~~~g~v~nI~~~ni~~~~~ 296 (410)
-...|++|++.... .| .|..........-....|.|+++...
T Consensus 237 --------g~a~Fe~C~I~s~~~~~G-~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 237 --------GLSLYEGCHLHAIARNFG-ALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred --------ceEEEEccEEEEecCCCe-EEecCCCCCCCCCceEEEEeeEecCC
Confidence 34678899887532 23 23221111112335778889998864
No 75
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.56 E-value=0.21 Score=48.17 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=12.8
Q ss_pred CCcEEEEc---CceEEee-eeEecC
Q 015254 53 TPSKVLIP---QGTYQLS-PVTMEG 73 (410)
Q Consensus 53 ~g~~v~~P---~G~Y~i~-~l~l~~ 73 (410)
+|+.+-+. +|.+.+. +|.|.+
T Consensus 33 pgd~~~i~g~~~g~~vInr~l~l~g 57 (408)
T COG3420 33 PGDYYGISGRYAGNFVINRALTLRG 57 (408)
T ss_pred CCcEEEEeeeecccEEEccceeecc
Confidence 56777777 3334554 777764
No 76
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=95.43 E-value=0.53 Score=45.17 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHHHhhcCC--CcEEEEcCceEEeeeeEecCCCCccEEEEEee
Q 015254 35 ADISQALRDAWKEACAATT--PSKVLIPQGTYQLSPVTMEGPCKAAIELQVKG 85 (410)
Q Consensus 35 tDdt~aiq~Ai~~a~~~~~--g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G 85 (410)
-++-..||+|+++|..... -..+.+.+|.|.= .+.++-+. -.++|++++
T Consensus 91 G~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e-~v~Vp~~~-~~ITLyGed 141 (405)
T COG4677 91 GVTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQE-TVYVPAAP-GGITLYGED 141 (405)
T ss_pred ccchHHHHHHHhhhcccCCCceEEEEEccceece-eEEecCCC-CceeEEecC
Confidence 3466678888877655433 2345568999953 23333100 136666653
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=94.27 E-value=2 Score=39.33 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=30.6
Q ss_pred EEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEec-CCceEEecCCceeEEEEeEEEc
Q 015254 176 FTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGT-GDDCISIGDGTQQMEINKIDCG 234 (410)
Q Consensus 176 v~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~s~~~nv~I~n~~~~ 234 (410)
.+++|+.|-. ...||||... +-+|+|+.+.. +.|++.++.....++|.+.-..
T Consensus 63 atlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~ 116 (215)
T PF03211_consen 63 ATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGAR 116 (215)
T ss_dssp EEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEE
T ss_pred CEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCccc
Confidence 4455555533 3467777765 66777777765 6777777775445555544433
No 78
>PLN02480 Probable pectinesterase
Probab=93.14 E-value=5.2 Score=39.46 Aligned_cols=111 Identities=10% Similarity=0.050 Sum_probs=72.6
Q ss_pred CeeeEEEEeEEEECCCC-----CCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecC
Q 015254 172 GAKNFTFQRVTVTAPEE-----SLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLG 245 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~-----~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g 245 (410)
..++++++|++|.|... .....++.+. .++++.+.||.|....|-+.... ..-.++||++.+.-.+=+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 45789999999998632 1124556653 47899999999998888776554 36788899887655565653
Q ss_pred ccCCCCCEEEEEEEceEEecCC------eeEEEEecCCCCCcceeeEEEEeEEEecC
Q 015254 246 KYQNEQPVVGIRVRECNISNTS------NGVRIKTWPASYPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 246 ~~~~~~~v~nv~i~n~~~~~~~------~gi~iks~~g~~~g~v~nI~~~ni~~~~~ 296 (410)
-...|+||++.... .|. |... +.....-....|.|+++...
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~-ITA~-~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGS-ITAH-NRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceE-EEcC-CCCCCCCCEEEEECCEEccc
Confidence 34678899887532 122 2222 11112335678888888763
No 79
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=92.90 E-value=11 Score=37.58 Aligned_cols=86 Identities=14% Similarity=0.216 Sum_probs=61.4
Q ss_pred EeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecC-CceEEecCCceeEEEEeEEEcCCc-eEEEeecCcc
Q 015254 170 VIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTG-DDCISIGDGTQQMEINKIDCGPGH-GISVGSLGKY 247 (410)
Q Consensus 170 ~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~g-dD~i~i~s~~~nv~I~n~~~~~~~-Gi~igs~g~~ 247 (410)
+.+-.+|++.|+.+...+ ...|+-+....++++++|.|.+- -.|+... ....|++|+|.+.. |+.-
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~------ 184 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVS------ 184 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeec------
Confidence 444568999999999853 35677888889999999999863 2344443 37889999997543 4432
Q ss_pred CCCCCEEEEEEEceEEecCCeeE
Q 015254 248 QNEQPVVGIRVRECNISNTSNGV 270 (410)
Q Consensus 248 ~~~~~v~nv~i~n~~~~~~~~gi 270 (410)
.....+.|++|.|+...-|+
T Consensus 185 ---~~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 185 ---RGKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred ---CCcceEEeeheeeeheEEEE
Confidence 33467778888888877566
No 80
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=91.86 E-value=0.26 Score=35.19 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=19.8
Q ss_pred CcCC--chhHHHHHHHHHHHhhcCCCcEEEEcCc-eEEeeeeEe
Q 015254 31 AKQN--ADISQALRDAWKEACAATTPSKVLIPQG-TYQLSPVTM 71 (410)
Q Consensus 31 a~gd--tDdt~aiq~Ai~~a~~~~~g~~v~~P~G-~Y~i~~l~l 71 (410)
|+|| +|||+||.+|+.+ + +. +.++=-.| ||++++|.-
T Consensus 1 A~GDGvtdDt~A~~a~l~a--~-~~-g~~IDg~GlTykVs~lPd 40 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEA--S-PV-GRKIDGAGLTYKVSSLPD 40 (67)
T ss_dssp ---CCCCE-HHHHHHHHHH--S--T-TS-EE-TT-EEEESS---
T ss_pred CCCccccCcHHHHHHHHhc--c-CC-CeEEecCCceEEEeeCcc
Confidence 6899 9999999999854 2 22 34555556 698876543
No 81
>PLN02773 pectinesterase
Probab=91.64 E-value=7.6 Score=37.85 Aligned_cols=112 Identities=9% Similarity=0.128 Sum_probs=77.6
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
.++++..+|++|.|...........+. .++.+.+.+|.|....|.+..+. ..-.++||++.+.-.+-+|.
T Consensus 100 ~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~------- 170 (317)
T PLN02773 100 EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN------- 170 (317)
T ss_pred ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec-------
Confidence 457899999999986432223444443 36899999999999888887765 36889999998766676764
Q ss_pred CCEEEEEEEceEEecCCeeEEEEecCCCC-CcceeeEEEEeEEEecCC
Q 015254 251 QPVVGIRVRECNISNTSNGVRIKTWPASY-PGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~~gi~iks~~g~~-~g~v~nI~~~ni~~~~~~ 297 (410)
-...|++|++.....|. |.. ++.. ...-....|.|+++....
T Consensus 171 ---g~a~Fe~c~i~s~~~g~-ITA-~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 171 ---STALLEHCHIHCKSAGF-ITA-QSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ---cEEEEEeeEEEEccCcE-EEC-CCCCCCCCCceEEEEccEEecCC
Confidence 34689999997655453 322 2111 122346789999998754
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=91.45 E-value=0.33 Score=32.31 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=18.5
Q ss_pred EEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEe
Q 015254 168 INVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIG 211 (410)
Q Consensus 168 i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~ 211 (410)
|.+..+.+.+|++.++.. +.+||++..+.+-+|+++.+.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 334444444455555543 334555555545555544443
No 83
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=90.93 E-value=5.4 Score=40.29 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=41.6
Q ss_pred eccEEEEeEEEecc--Cc-----ceE--EEeCeeeEEEEeEEEECCCCCCCCCc--eEe----eccccEEEEeeEEecC-
Q 015254 150 ITNSVVQDVTSLNS--KQ-----FHI--NVIGAKNFTFQRVTVTAPEESLNTDG--IHV----GRSSGVTITDSKIGTG- 213 (410)
Q Consensus 150 ~~nv~I~~i~i~ns--~~-----~~i--~~~~~~nv~i~n~~i~~~~~~~n~DG--i~~----~~s~nv~I~n~~i~~g- 213 (410)
.+.++|+++++++. |. +.. .-..+.+.+++++.|..-.. +..+. .-+ ...++-+|.+|.|...
T Consensus 66 G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~-~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~ 144 (425)
T PF14592_consen 66 GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNN-PDREESDNWVTIYSLYGKHNRVDHNYFQGKT 144 (425)
T ss_dssp SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--S-S-S-SEEE---TT-----S-EEES-EEE---
T ss_pred eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCC-cccccCceEEEEEEeeccCceEEccEeeccc
Confidence 35566666766652 11 111 11135566677776665221 11111 111 2356677777777642
Q ss_pred --CceEEec--C-----CceeEEEEeEEEcC-----Cc---eEEEeecCccCCCCCEEEEEEEceEEecCCe---eEEEE
Q 015254 214 --DDCISIG--D-----GTQQMEINKIDCGP-----GH---GISVGSLGKYQNEQPVVGIRVRECNISNTSN---GVRIK 273 (410)
Q Consensus 214 --dD~i~i~--s-----~~~nv~I~n~~~~~-----~~---Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~---gi~ik 273 (410)
.--+.+. - -..+-.|.+++|.. +. .|+||.-. ....-.+.+|+++.|+++.. -|++|
T Consensus 145 ~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~---~S~~~s~t~Ve~NlFe~cdGE~EIISvK 221 (425)
T PF14592_consen 145 NRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSH---SSMSDSNTTVENNLFERCDGEVEIISVK 221 (425)
T ss_dssp SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SST---T-B-----EEES-EEEEE-SSSEEEEEE
T ss_pred cCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEeccc---ccccccceeeecchhhhcCCceeEEEee
Confidence 1123333 0 12345667777641 22 37776532 22334566677777666541 25555
Q ss_pred e
Q 015254 274 T 274 (410)
Q Consensus 274 s 274 (410)
+
T Consensus 222 S 222 (425)
T PF14592_consen 222 S 222 (425)
T ss_dssp S
T ss_pred c
Confidence 4
No 84
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=90.92 E-value=0.34 Score=32.27 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=32.2
Q ss_pred ceEeeccccEEEEeeEEecCCceEEecCCceeEEEEeEEEc
Q 015254 194 GIHVGRSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCG 234 (410)
Q Consensus 194 Gi~~~~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~ 234 (410)
||.++.+.+.+|+++.+....|+|.+.. +.+-+|+++++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~~ 40 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTAS 40 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEEE
Confidence 6888888899999999998888998877 456677776664
No 85
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=90.53 E-value=14 Score=33.90 Aligned_cols=133 Identities=17% Similarity=0.128 Sum_probs=80.9
Q ss_pred eccEEEEeEEEeccCcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccc-cEEEEeeEEecCCceEEecCCceeEEE
Q 015254 150 ITNSVVQDVTSLNSKQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSS-GVTITDSKIGTGDDCISIGDGTQQMEI 228 (410)
Q Consensus 150 ~~nv~I~~i~i~ns~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~-nv~I~n~~i~~gdD~i~i~s~~~nv~I 228 (410)
.+..+++|+.|-.+...+||... +.+|+|+..+. --.|.+.+.... .++|.+.-.+..+|=|-=..+.-.+.|
T Consensus 60 e~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gtv~I 133 (215)
T PF03211_consen 60 EDGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGTVTI 133 (215)
T ss_dssp ETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEEEEE
T ss_pred cCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccEEEecCceeEEE
Confidence 46889999999777778999988 78999999987 367888888766 888888888877765544444557888
Q ss_pred EeEEEcCCceEEEeecCccCCC-CCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEe
Q 015254 229 NKIDCGPGHGISVGSLGKYQNE-QPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFED 290 (410)
Q Consensus 229 ~n~~~~~~~Gi~igs~g~~~~~-~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~n 290 (410)
+|.+.. ..|--.-|.|.-... +.-+++++++........-..|-...+. ...++++.+..
T Consensus 134 ~nF~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD-~ati~~~~~~~ 194 (215)
T PF03211_consen 134 KNFYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD-TATISNSCIKG 194 (215)
T ss_dssp EEEEEE-EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT-TEEEEEEEEEE
T ss_pred EeEEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC-eEEEEEEEecC
Confidence 885543 234333344432222 2445677776654432222344444444 24555555444
No 86
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=89.59 E-value=3.9 Score=39.56 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=63.0
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++.++|++|.|.........+.+. .++++.+.+|.|....|-+....+ ...++||++.+.-.+-+|.
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~QDTL~~~~~--r~y~~~c~IeG~vDFIfG~------- 155 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGYQDTLYANGG--RQYFKNCYIEGNVDFIFGN------- 155 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-STT-EEE-SS--EEEEES-EEEESEEEEEES-------
T ss_pred cccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEccccceeeeccc--eeEEEeeEEEecCcEEECC-------
Confidence 467899999999985422222233322 357899999999998888877663 6788999998666666664
Q ss_pred CCEEEEEEEceEEecCCe----eEEEEecCCCCCcceeeEEEEeEEEecC
Q 015254 251 QPVVGIRVRECNISNTSN----GVRIKTWPASYPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~~----gi~iks~~g~~~g~v~nI~~~ni~~~~~ 296 (410)
....|+||++.-... .-.|..........-....|.|+++...
T Consensus 156 ---~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 156 ---GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp ---SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred ---eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 235688888875321 1233222111113346778889888764
No 87
>PLN02916 pectinesterase family protein
Probab=89.42 E-value=9.1 Score=39.67 Aligned_cols=113 Identities=9% Similarity=0.102 Sum_probs=76.5
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.........+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-.+-+|.
T Consensus 275 ~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 345 (502)
T PLN02916 275 SGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIFGD------- 345 (502)
T ss_pred ECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceeccC-------
Confidence 346788999999986543344555554 468899999999998888877763 4688999998766666664
Q ss_pred CCEEEEEEEceEEecCCe----eEEEEecCCC-CCcceeeEEEEeEEEecCC
Q 015254 251 QPVVGIRVRECNISNTSN----GVRIKTWPAS-YPGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~~----gi~iks~~g~-~~g~v~nI~~~ni~~~~~~ 297 (410)
-...|+||++.-... .-.|.. +++ ....-..+.|.|+++....
T Consensus 346 ---a~avFq~C~I~~~~~~~~~~g~ITA-q~r~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 346 ---AAVVFQNCDIFVRRPMDHQGNMITA-QGRDDPHENTGISIQHSRVRASP 393 (502)
T ss_pred ---ceEEEecCEEEEecCCCCCcceEEe-cCCCCCCCCcEEEEEeeEEecCc
Confidence 346788998864321 122322 221 1133467889999998753
No 88
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=89.23 E-value=9 Score=39.93 Aligned_cols=114 Identities=10% Similarity=0.152 Sum_probs=76.5
Q ss_pred eCeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCC
Q 015254 171 IGAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQN 249 (410)
Q Consensus 171 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~ 249 (410)
...+++..+|++|.|.........+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-.+-+|.
T Consensus 310 v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 381 (529)
T PLN02170 310 AMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSK--RQFYRETDITGTVDFIFGN------ 381 (529)
T ss_pred EEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCC--CEEEEeeEEccccceeccc------
Confidence 3457899999999987543334455543 368899999999998888877663 4577999998766666654
Q ss_pred CCCEEEEEEEceEEecCCe---eEEEEecCCC-CCcceeeEEEEeEEEecCC
Q 015254 250 EQPVVGIRVRECNISNTSN---GVRIKTWPAS-YPGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 250 ~~~v~nv~i~n~~~~~~~~---gi~iks~~g~-~~g~v~nI~~~ni~~~~~~ 297 (410)
-...|+||++.-... .-.|.. +++ ....-..+.|.|+++....
T Consensus 382 ----a~avFq~C~I~~~~~~~~~g~ITA-q~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 382 ----SAVVFQSCNIAARKPSGDRNYVTA-QGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred ----ceEEEeccEEEEecCCCCceEEEe-cCCCCCCCCceEEEEeeEEecCC
Confidence 346788998865321 122322 221 1133467889999998744
No 89
>PLN02665 pectinesterase family protein
Probab=88.92 E-value=12 Score=37.24 Aligned_cols=113 Identities=10% Similarity=0.060 Sum_probs=74.3
Q ss_pred CeeeEEEEeEEEECCCCC-----CCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecC
Q 015254 172 GAKNFTFQRVTVTAPEES-----LNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLG 245 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~-----~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g 245 (410)
.++++..+|++|.|.... .+...+.+. ..+...+.||.|....|-+.... ..-.+++|++.+.-.+-+|.
T Consensus 152 ~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG~-- 227 (366)
T PLN02665 152 ESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFGS-- 227 (366)
T ss_pred ECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceeccc--
Confidence 467899999999985421 112333333 36889999999999888877655 36789999998766666654
Q ss_pred ccCCCCCEEEEEEEceEEecCCee--EEEEecCCCC-CcceeeEEEEeEEEecCC
Q 015254 246 KYQNEQPVVGIRVRECNISNTSNG--VRIKTWPASY-PGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 246 ~~~~~~~v~nv~i~n~~~~~~~~g--i~iks~~g~~-~g~v~nI~~~ni~~~~~~ 297 (410)
-...|++|++.-...+ -.| +-+++. ...-....|.|+++....
T Consensus 228 --------g~a~fe~C~i~s~~~~~~g~I-TA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 228 --------GKSLYLNTELHVVGDGGLRVI-TAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred --------cceeeEccEEEEecCCCcEEE-EcCCCCCCCCCceEEEEeeEEecCC
Confidence 2356888888764433 122 222211 123356789999998754
No 90
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=88.32 E-value=23 Score=35.90 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=30.1
Q ss_pred cccEEEEeeEEecCCceEEecCC----------ceeEEEEeEEEcCCceEEEeecCccCCCCCEEEEEEEceEEec
Q 015254 200 SSGVTITDSKIGTGDDCISIGDG----------TQQMEINKIDCGPGHGISVGSLGKYQNEQPVVGIRVRECNISN 265 (410)
Q Consensus 200 s~nv~I~n~~i~~gdD~i~i~s~----------~~nv~I~n~~~~~~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~ 265 (410)
.+.+.+.+|.|....|-+..... ...-.+++|++.+.-.+-+|. -...|+||++.-
T Consensus 237 GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~VDFIFG~----------g~AvFenC~I~s 302 (422)
T PRK10531 237 GDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGDVDFVFGR----------GAVVFDNTEFRV 302 (422)
T ss_pred CCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeecccEEccC----------ceEEEEcCEEEE
Confidence 45666666666665565544210 114566666666544444443 234566666654
No 91
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=88.10 E-value=7.7 Score=40.65 Aligned_cols=113 Identities=11% Similarity=0.135 Sum_probs=75.9
Q ss_pred eCeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCC
Q 015254 171 IGAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQN 249 (410)
Q Consensus 171 ~~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~ 249 (410)
...+++..+|++|.|.........+.+. .++++.+.+|.|....|-+..+++ .-..++|++.+.-.+-+|.
T Consensus 316 v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~--rqyy~~C~I~GtVDFIFG~------ 387 (537)
T PLN02506 316 VSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSL--RQFYRECEIYGTIDFIFGN------ 387 (537)
T ss_pred EEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCC--ceEEEeeEEecccceEccC------
Confidence 3457899999999987543344555544 478999999999998888777663 4689999998766676764
Q ss_pred CCCEEEEEEEceEEecCCe----eEEEEecCCC-CCcceeeEEEEeEEEecC
Q 015254 250 EQPVVGIRVRECNISNTSN----GVRIKTWPAS-YPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 250 ~~~v~nv~i~n~~~~~~~~----gi~iks~~g~-~~g~v~nI~~~ni~~~~~ 296 (410)
-...|+||++.-... .-.|.. +++ ....-..+.|.|+++...
T Consensus 388 ----a~avfq~C~i~~r~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 388 ----GAAVLQNCKIYTRVPLPLQKVTITA-QGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred ----ceeEEeccEEEEccCCCCCCceEEc-cCCCCCCCCcEEEEEcCEEccC
Confidence 346788999875321 112322 221 112345688999988763
No 92
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=87.97 E-value=18 Score=32.14 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=43.1
Q ss_pred eEEEEeEEEcC--CceEEE-eecCccCCCCCEEEEEEEceEEecCCeeEEEEecCCC-CCcceeeEEEEeEEEecCCccE
Q 015254 225 QMEINKIDCGP--GHGISV-GSLGKYQNEQPVVGIRVRECNISNTSNGVRIKTWPAS-YPGTASDLHFEDIKMNNVSNPI 300 (410)
Q Consensus 225 nv~I~n~~~~~--~~Gi~i-gs~g~~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~-~~g~v~nI~~~ni~~~~~~~~i 300 (410)
||.|.|+++.. +.||-| |..+.+ .+...+||+|.++.|.+++.--.+ .|.|+ -.....|.++||..++++..+-
T Consensus 3 dIEIYnN~I~~T~g~GIWl~gy~~~y-sk~~a~nVhIhhN~fY~tGtn~~~-~wvGGIv~sGF~ntlIENNVfDG~y~aa 80 (198)
T PF08480_consen 3 DIEIYNNTIYNTYGPGIWLFGYDGSY-SKDSAKNVHIHHNIFYDTGTNPNI-DWVGGIVTSGFYNTLIENNVFDGVYHAA 80 (198)
T ss_pred ceEEecceeecccCceEEEEecCCCC-CccccccEEEECcEeecCCcCCCC-ceeeeEEeccccccEEEeeeecccccce
Confidence 67777777765 346544 332222 445566888888888776532211 11100 0123456788888888877644
Q ss_pred EEE
Q 015254 301 LLD 303 (410)
Q Consensus 301 ~i~ 303 (410)
.+.
T Consensus 81 i~~ 83 (198)
T PF08480_consen 81 IAQ 83 (198)
T ss_pred EEE
Confidence 433
No 93
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=87.81 E-value=10 Score=40.11 Aligned_cols=113 Identities=11% Similarity=0.135 Sum_probs=75.9
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.......+.+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-.+-+|.
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 408 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL--RQFYRECDIYGTVDFIFGN------- 408 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC--CEEEEeeEEecccceeccc-------
Confidence 347899999999986543344555544 468899999999998888877763 4689999998766666664
Q ss_pred CCEEEEEEEceEEecCCe--e--EEEEecCCC-CCcceeeEEEEeEEEecCC
Q 015254 251 QPVVGIRVRECNISNTSN--G--VRIKTWPAS-YPGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~~--g--i~iks~~g~-~~g~v~nI~~~ni~~~~~~ 297 (410)
-.+.|+||.+.-... + -.|.. +++ ....-..+.|.|+++....
T Consensus 409 ---a~avfq~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~G~vf~~c~i~~~~ 456 (566)
T PLN02713 409 ---AAVVFQNCNLYPRLPMQGQFNTITA-QGRTDPNQNTGTSIQNCTIKAAD 456 (566)
T ss_pred ---ceEEEeccEEEEecCCCCCcceeee-cCCCCCCCCCEEEEEcCEEecCC
Confidence 346789999864321 1 12222 221 1133467889999988643
No 94
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=87.44 E-value=7.2 Score=41.88 Aligned_cols=112 Identities=7% Similarity=0.132 Sum_probs=76.8
Q ss_pred eeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCC
Q 015254 173 AKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQ 251 (410)
Q Consensus 173 ~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~ 251 (410)
.+++..+|++|.|.......+.+.+. .++...+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|.
T Consensus 336 g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 405 (670)
T PLN02217 336 GDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGD-------- 405 (670)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecC--------
Confidence 46889999999987543345555554 47899999999999888877665 35689999998666666654
Q ss_pred CEEEEEEEceEEecCC----eeEEEEecCCCC-CcceeeEEEEeEEEecCC
Q 015254 252 PVVGIRVRECNISNTS----NGVRIKTWPASY-PGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 252 ~v~nv~i~n~~~~~~~----~gi~iks~~g~~-~g~v~nI~~~ni~~~~~~ 297 (410)
-...|+||++.-.. ..-.|.. ++.. ...-..+.|.|+++....
T Consensus 406 --a~avfq~C~I~~r~~~~~~~~~ITA-qgr~~~~~~tGfvf~~C~i~~~~ 453 (670)
T PLN02217 406 --AAAVFQNCTLLVRKPLLNQACPITA-HGRKDPRESTGFVLQGCTIVGEP 453 (670)
T ss_pred --ceEEEEccEEEEccCCCCCceeEec-CCCCCCCCCceEEEEeeEEecCc
Confidence 34678999997432 1122322 2221 134467899999998753
No 95
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=87.41 E-value=9.6 Score=39.59 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=39.0
Q ss_pred eeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecCCc
Q 015254 149 AITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGDGT 223 (410)
Q Consensus 149 ~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~~ 223 (410)
..+++..+||+|+|... ..+.+. ..+...+.+|.|....|.. -.. ...-.+++|.|...=|-|- + .
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTL-----y~~-~~rqyy~~C~I~G~vDFIF-G--~ 338 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTL-----YAA-ALRQFYRECDIYGTIDFIF-G--N 338 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchh-----eeC-CCcEEEEeeEEEeccceEe-c--c
Confidence 45677777777777532 122222 3566666666666644321 111 2234566666664433321 1 2
Q ss_pred eeEEEEeEEEc
Q 015254 224 QQMEINKIDCG 234 (410)
Q Consensus 224 ~nv~I~n~~~~ 234 (410)
....++||++.
T Consensus 339 a~avf~~C~i~ 349 (497)
T PLN02698 339 AAAVFQNCYLF 349 (497)
T ss_pred cceeecccEEE
Confidence 35566666663
No 96
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=87.22 E-value=16 Score=38.20 Aligned_cols=112 Identities=8% Similarity=0.078 Sum_probs=69.9
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.......+.+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-.+-+|.
T Consensus 291 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 361 (520)
T PLN02201 291 SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM--RQFYRECRITGTVDFIFGD------- 361 (520)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC--CEEEEeeEEeecccEEecC-------
Confidence 456788888888886543334455544 367888888988888887776653 3567888887665666654
Q ss_pred CCEEEEEEEceEEecCC----eeEEEEecCCC-CCcceeeEEEEeEEEecC
Q 015254 251 QPVVGIRVRECNISNTS----NGVRIKTWPAS-YPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~----~gi~iks~~g~-~~g~v~nI~~~ni~~~~~ 296 (410)
-...|+||++.-.. ..-.|.. +++ ....-..+.|.|+++...
T Consensus 362 ---a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 362 ---ATAVFQNCQILAKKGLPNQKNTITA-QGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred ---ceEEEEccEEEEecCCCCCCceEEe-cCCCCCCCCcEEEEEeeEEecC
Confidence 34668888886421 0112222 221 113345678888888764
No 97
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=87.06 E-value=19 Score=37.32 Aligned_cols=112 Identities=9% Similarity=0.047 Sum_probs=76.3
Q ss_pred eeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCC
Q 015254 173 AKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQ 251 (410)
Q Consensus 173 ~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~ 251 (410)
.+++..+|++|.|.......+.+.+. .++...+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|.
T Consensus 283 g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~-------- 352 (509)
T PLN02488 283 GDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN-------- 352 (509)
T ss_pred cCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc--------
Confidence 46788899999986543344555554 47899999999999888877766 35789999998766666664
Q ss_pred CEEEEEEEceEEecCCe----eEEEEecCCCC-CcceeeEEEEeEEEecCC
Q 015254 252 PVVGIRVRECNISNTSN----GVRIKTWPASY-PGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 252 ~v~nv~i~n~~~~~~~~----gi~iks~~g~~-~g~v~nI~~~ni~~~~~~ 297 (410)
-.+.|+||++.-... .-.|.. ++.. ...-..+.|.|+++....
T Consensus 353 --a~avFq~C~I~sr~~~~~~~~~ITA-q~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 --AAAVFQFCQIVARQPMMGQSNVITA-QSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred --eEEEEEccEEEEecCCCCCCEEEEe-CCCCCCCCCcEEEEEeeEEecCC
Confidence 457799999975321 113322 2221 123456889999998754
No 98
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=86.89 E-value=45 Score=35.23 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=74.3
Q ss_pred EEeeccEEEEeEEEeccCc----ceEEEe-CeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEecCCceEEecC
Q 015254 147 FNAITNSVVQDVTSLNSKQ----FHINVI-GAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGTGDDCISIGD 221 (410)
Q Consensus 147 ~~~~~nv~I~~i~i~ns~~----~~i~~~-~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s 221 (410)
....+++..+|++|+|... ..+.+. .++.+.+.||.|.+..|.... .+..-.+++|.|...=|-| ++
T Consensus 326 ~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~------~~~rq~y~~C~I~GtVDFI-FG- 397 (553)
T PLN02708 326 GVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYA------HSLRQFYKSCRIQGNVDFI-FG- 397 (553)
T ss_pred EEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecccccee------CCCceEEEeeEEeecCCEE-ec-
Confidence 3457789999999998642 233333 467788888888875543221 1234567888887654433 22
Q ss_pred CceeEEEEeEEEcC---------CceEEEeecCccCCCCCEEEEEEEceEEecCCeeE--------EEEecCCCCCccee
Q 015254 222 GTQQMEINKIDCGP---------GHGISVGSLGKYQNEQPVVGIRVRECNISNTSNGV--------RIKTWPASYPGTAS 284 (410)
Q Consensus 222 ~~~nv~I~n~~~~~---------~~Gi~igs~g~~~~~~~v~nv~i~n~~~~~~~~gi--------~iks~~g~~~g~v~ 284 (410)
.-..+++||.+.. +..-.|-..++ .+...-..+.|.||++.....-. ..+++=|+....-.
T Consensus 398 -~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r-~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~~~~~yLGRPW~~ys 475 (553)
T PLN02708 398 -NSAAVFQDCAILIAPRQLKPEKGENNAVTAHGR-TDPAQSTGFVFQNCLINGTEEYMKLYRSNPKVHKNFLGRPWKEYS 475 (553)
T ss_pred -CceEEEEccEEEEeccccCCCCCCceEEEeCCC-CCCCCCceEEEEccEEecCCcccccccccccccceeeecCCCCcc
Confidence 2477777777741 11112211111 12233456778888886643211 01222233334445
Q ss_pred eEEEEeEEEec
Q 015254 285 DLHFEDIKMNN 295 (410)
Q Consensus 285 nI~~~ni~~~~ 295 (410)
.+.|-+..+.+
T Consensus 476 r~V~~~s~l~~ 486 (553)
T PLN02708 476 RTVFIGCNLEA 486 (553)
T ss_pred eEEEEecccCC
Confidence 56666666554
No 99
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=86.83 E-value=28 Score=32.71 Aligned_cols=104 Identities=24% Similarity=0.296 Sum_probs=53.5
Q ss_pred EEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEeeEEec-CCceEEecCCceeEEEEeEEEcCCceEEEeecCc
Q 015254 168 INVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITDSKIGT-GDDCISIGDGTQQMEINKIDCGPGHGISVGSLGK 246 (410)
Q Consensus 168 i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n~~i~~-gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~ 246 (410)
+.+....+..|++++|.++.. ...-|+.+.++ +.+|+||+|.. ..+ |+.+-...
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~----------------------GI~v~g~~- 145 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGRE----------------------GIFVTGTS- 145 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccc----------------------cEEEEeee-
Confidence 445556778888888888621 13344555443 55555555554 223 33331110
Q ss_pred cCCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceeeEEEEeEEEecCCccEEEE
Q 015254 247 YQNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASDLHFEDIKMNNVSNPILLD 303 (410)
Q Consensus 247 ~~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~nI~~~ni~~~~~~~~i~i~ 303 (410)
-...+.+++|+.+.+.....|+.+..... + +.+ .++|..+++...+|.+.
T Consensus 146 --~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~---~-~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 146 --ANPGINGNVISGNSIYFNKTGISISDNAA---P-VEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred --cCCcccceEeecceEEecCcCeEEEcccC---C-ccc-eeeccEEEeCCcCeEee
Confidence 02345566666666666666666643321 2 222 33555555544455544
No 100
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=86.75 E-value=14 Score=38.72 Aligned_cols=113 Identities=9% Similarity=0.106 Sum_probs=76.0
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.........+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-.+-+|.
T Consensus 311 ~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~--rq~y~~c~I~GtVDFIFG~------- 381 (538)
T PLN03043 311 SGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSL--RQFYRECDIYGTVDFIFGN------- 381 (538)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCC--cEEEEeeEEeeccceEeec-------
Confidence 347899999999986543344555554 468899999999998888777663 4688999998766676764
Q ss_pred CCEEEEEEEceEEecCC----eeEEEEecCCCC-CcceeeEEEEeEEEecCC
Q 015254 251 QPVVGIRVRECNISNTS----NGVRIKTWPASY-PGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~----~gi~iks~~g~~-~g~v~nI~~~ni~~~~~~ 297 (410)
-.+.|+||++.-.. ..-.|.. +++. ...-..+.|.|+++....
T Consensus 382 ---a~avfq~c~i~~r~~~~~~~~~iTA-~~r~~~~~~tG~~~~~c~i~~~~ 429 (538)
T PLN03043 382 ---AAAIFQNCNLYARKPMANQKNAFTA-QGRTDPNQNTGISIINCTIEAAP 429 (538)
T ss_pred ---ceeeeeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEecEEecCC
Confidence 34678999986521 0112222 2211 123357889999998643
No 101
>PLN02432 putative pectinesterase
Probab=86.73 E-value=15 Score=35.46 Aligned_cols=110 Identities=12% Similarity=0.130 Sum_probs=70.8
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++.++|++|.|... .....+.+. ..+...+.+|.|....|.+-.+. ..-.++||++.+.-.+-+|.
T Consensus 92 ~a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~------- 161 (293)
T PLN02432 92 LASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGN------- 161 (293)
T ss_pred ECCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecC-------
Confidence 34689999999998643 223444443 36889999999998888876655 35788999988665666664
Q ss_pred CCEEEEEEEceEEecCC--eeEEEEecCCCCCcceeeEEEEeEEEec
Q 015254 251 QPVVGIRVRECNISNTS--NGVRIKTWPASYPGTASDLHFEDIKMNN 295 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~--~gi~iks~~g~~~g~v~nI~~~ni~~~~ 295 (410)
-...|++|++.-.. .| .|..........-....|.|+++..
T Consensus 162 ---g~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 162 ---AASLFEKCHLHSLSPNNG-AITAQQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred ---ceEEEEeeEEEEecCCCC-eEEecCCCCCCCCceEEEEeeEEcc
Confidence 23668888886422 23 2322211111233467888888875
No 102
>PLN02634 probable pectinesterase
Probab=86.50 E-value=14 Score=36.57 Aligned_cols=110 Identities=9% Similarity=0.129 Sum_probs=71.3
Q ss_pred eeeEEEEeEEEECCCC-----CCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCc
Q 015254 173 AKNFTFQRVTVTAPEE-----SLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGK 246 (410)
Q Consensus 173 ~~nv~i~n~~i~~~~~-----~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~ 246 (410)
.+++..+|++|.|... ..+...+.+. .++...+.+|.|....|-+.... ..-.++||++.+.-.+-+|.
T Consensus 148 a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIFG~--- 222 (359)
T PLN02634 148 ANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIFGN--- 222 (359)
T ss_pred CCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEcCC---
Confidence 3577888888887532 1223344443 36889999999999888876655 36889999998665666654
Q ss_pred cCCCCCEEEEEEEceEEecCCe--eEEEEecCCC-CCcceeeEEEEeEEEecC
Q 015254 247 YQNEQPVVGIRVRECNISNTSN--GVRIKTWPAS-YPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 247 ~~~~~~v~nv~i~n~~~~~~~~--gi~iks~~g~-~~g~v~nI~~~ni~~~~~ 296 (410)
-...|+||++..... | .|. .+++ ....-....|.|+++...
T Consensus 223 -------g~a~Fe~C~I~s~~~~~g-~IT-A~~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 223 -------GRSMYKDCELHSIASRFG-SIA-AHGRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred -------ceEEEeccEEEEecCCCc-EEE-eCCCCCCCCCcEEEEEcCEEcCC
Confidence 235688999875432 3 222 2221 112335678999999764
No 103
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=86.25 E-value=16 Score=38.89 Aligned_cols=113 Identities=5% Similarity=0.038 Sum_probs=75.4
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.........+.+. .++...+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|.
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 440 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------- 440 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc-------
Confidence 457889999999986532234445543 47899999999999888776665 35789999998766666664
Q ss_pred CCEEEEEEEceEEecCCe----eEEEEecCCC-CCcceeeEEEEeEEEecCC
Q 015254 251 QPVVGIRVRECNISNTSN----GVRIKTWPAS-YPGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~~----gi~iks~~g~-~~g~v~nI~~~ni~~~~~~ 297 (410)
-...|+||++.-... .-.|.. ++. ....-..+.|.|+++....
T Consensus 441 ---a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 441 ---AAAIFQNCLIFVRKPLPNQQNTVTA-QGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ---eeEEEEecEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEeeEEecCc
Confidence 456788998864210 112322 221 1133467889999998743
No 104
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=86.18 E-value=6.6 Score=39.26 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=38.2
Q ss_pred cccEEEEeeE-EecCCceEEecCC-----------------------ceeEEEEeEEEcCCceEEEeecCccCCCCCEEE
Q 015254 200 SSGVTITDSK-IGTGDDCISIGDG-----------------------TQQMEINKIDCGPGHGISVGSLGKYQNEQPVVG 255 (410)
Q Consensus 200 s~nv~I~n~~-i~~gdD~i~i~s~-----------------------~~nv~I~n~~~~~~~Gi~igs~g~~~~~~~v~n 255 (410)
+-|.+++|+. +..--|++.+++. -.|-.|+|+....+.|+.+|-.| ..+.++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG---~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDG---KGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEEC---CS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecC---CCceEee
Confidence 4567777775 4456677777662 25778888888887887776544 4567777
Q ss_pred EEEEceEEecCCeeEEEEe
Q 015254 256 IRVRECNISNTSNGVRIKT 274 (410)
Q Consensus 256 v~i~n~~~~~~~~gi~iks 274 (410)
|++++|. ..|+.++.
T Consensus 340 i~~~d~~----g~G~~~~~ 354 (549)
T PF09251_consen 340 ITVQDCA----GAGIFIRG 354 (549)
T ss_dssp EEEES-S----SESEEEEC
T ss_pred EEeeccc----CCceEEee
Confidence 7777764 33555533
No 105
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=86.17 E-value=13 Score=39.16 Aligned_cols=111 Identities=13% Similarity=0.184 Sum_probs=74.7
Q ss_pred eeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCC
Q 015254 173 AKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQ 251 (410)
Q Consensus 173 ~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~ 251 (410)
.+++..+|++|.|.......+.+.+. .++.+.+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|.
T Consensus 316 ~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 385 (541)
T PLN02416 316 GEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN-------- 385 (541)
T ss_pred CCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc--------
Confidence 57899999999987543344555543 46889999999999888777665 35689999998766666664
Q ss_pred CEEEEEEEceEEecCCe--e--EEEEecCCCC-CcceeeEEEEeEEEecC
Q 015254 252 PVVGIRVRECNISNTSN--G--VRIKTWPASY-PGTASDLHFEDIKMNNV 296 (410)
Q Consensus 252 ~v~nv~i~n~~~~~~~~--g--i~iks~~g~~-~g~v~nI~~~ni~~~~~ 296 (410)
-...|+||++.-... | -.| +-++.. ...-..+.|.|+++...
T Consensus 386 --a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 386 --AAVVFQACNIVSKMPMPGQFTVI-TAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred --ceEEEeccEEEEecCCCCCceEE-ECCCCCCCCCCCEEEEEeeEEecC
Confidence 346788888865321 1 122 222211 12345788999998764
No 106
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=85.91 E-value=13 Score=39.21 Aligned_cols=112 Identities=8% Similarity=0.121 Sum_probs=75.0
Q ss_pred eeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCC
Q 015254 173 AKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQ 251 (410)
Q Consensus 173 ~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~ 251 (410)
.+++..+|++|.|.........+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-.+-+|.
T Consensus 344 ~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~-------- 413 (565)
T PLN02468 344 GKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQ--RQFYRECNIYGTVDFIFGN-------- 413 (565)
T ss_pred CCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCC--ceEEEeeEEecccceeecc--------
Confidence 46899999999986543344555553 478899999999998888777663 4569999998766676664
Q ss_pred CEEEEEEEceEEecCCe----eEEEEecCCCC-CcceeeEEEEeEEEecCC
Q 015254 252 PVVGIRVRECNISNTSN----GVRIKTWPASY-PGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 252 ~v~nv~i~n~~~~~~~~----gi~iks~~g~~-~g~v~nI~~~ni~~~~~~ 297 (410)
-.+.|+||++.-... .-.|.. ++.. ...-..+.|.|+++....
T Consensus 414 --a~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 414 --SAVVFQNCNILPRRPMKGQQNTITA-QGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred --ceEEEeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEccEEecCC
Confidence 346788998864311 112322 2211 133467889999988643
No 107
>PLN02304 probable pectinesterase
Probab=85.87 E-value=19 Score=35.89 Aligned_cols=111 Identities=7% Similarity=0.106 Sum_probs=70.8
Q ss_pred eeeEEEEeEEEECCCC-----CCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCc
Q 015254 173 AKNFTFQRVTVTAPEE-----SLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGK 246 (410)
Q Consensus 173 ~~nv~i~n~~i~~~~~-----~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~ 246 (410)
.+++..+|++|.|... ....+.+.+. .++...+.+|.|....|.+..+. ..-.++||++.+.-.+-+|.
T Consensus 161 a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~--gR~Yf~~CyIeG~VDFIFG~--- 235 (379)
T PLN02304 161 ASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR--GRHYFKDCYIQGSIDFIFGD--- 235 (379)
T ss_pred CCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC--CCEEEEeeEEcccccEEecc---
Confidence 4678888888888542 1123444443 47899999999999888876655 35789999998766666664
Q ss_pred cCCCCCEEEEEEEceEEecCCee---------EEEEecCCCCCcceeeEEEEeEEEec
Q 015254 247 YQNEQPVVGIRVRECNISNTSNG---------VRIKTWPASYPGTASDLHFEDIKMNN 295 (410)
Q Consensus 247 ~~~~~~v~nv~i~n~~~~~~~~g---------i~iks~~g~~~g~v~nI~~~ni~~~~ 295 (410)
-...|++|++...... =.|..........-....|.|+++..
T Consensus 236 -------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg 286 (379)
T PLN02304 236 -------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGG 286 (379)
T ss_pred -------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEcc
Confidence 3457888888753211 12222110111233567788998876
No 108
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=85.82 E-value=17 Score=38.07 Aligned_cols=112 Identities=6% Similarity=0.121 Sum_probs=67.0
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.........+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-.+-+|.
T Consensus 303 ~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~------- 373 (530)
T PLN02933 303 KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGN------- 373 (530)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccC-------
Confidence 346788888888876533334445543 367788888888887777666553 3478888887665665654
Q ss_pred CCEEEEEEEceEEecCC----eeEEEEecCCC-CCcceeeEEEEeEEEecC
Q 015254 251 QPVVGIRVRECNISNTS----NGVRIKTWPAS-YPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~----~gi~iks~~g~-~~g~v~nI~~~ni~~~~~ 296 (410)
-...|+||.+.-.. ..-.|.. +++ ....-..+.|.|+++...
T Consensus 374 ---a~avFq~C~i~~~~~~~~~~~~iTA-q~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 374 ---AAVVFQNCSLYARKPNPNHKIAFTA-QSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred ---ceEEEeccEEEEeccCCCCceEEEe-cCCCCCCCCceEEEEeeEEecC
Confidence 23567777775321 0112222 211 112335677888888764
No 109
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=85.65 E-value=15 Score=38.61 Aligned_cols=113 Identities=10% Similarity=0.130 Sum_probs=71.7
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.........+.+. .++...+.+|.|....|-+..+++ .-..++|++.+.-.+-+|.
T Consensus 321 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 391 (548)
T PLN02301 321 VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL--RQFYRDSYITGTVDFIFGN------- 391 (548)
T ss_pred ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC--cEEEEeeEEEeccceeccc-------
Confidence 447788888888886532334445443 368889999999888887776663 4588889888665666654
Q ss_pred CCEEEEEEEceEEecCCe--e--EEEEecCCC-CCcceeeEEEEeEEEecCC
Q 015254 251 QPVVGIRVRECNISNTSN--G--VRIKTWPAS-YPGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~~--g--i~iks~~g~-~~g~v~nI~~~ni~~~~~~ 297 (410)
-...|+||++.-... + -.|.. +++ ....-..+.|.|+++....
T Consensus 392 ---a~avfq~c~i~~~~~~~~~~~~iTA-qgr~~~~~~tG~vf~~c~i~~~~ 439 (548)
T PLN02301 392 ---AAVVFQNCKIVARKPMAGQKNMVTA-QGRTDPNQNTGISIQKCDIIASS 439 (548)
T ss_pred ---ceeEEeccEEEEecCCCCCCceEEe-cCCCCCCCCCEEEEEeeEEecCc
Confidence 346688888864321 1 12222 221 1133457888888887643
No 110
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=85.56 E-value=17 Score=38.54 Aligned_cols=112 Identities=10% Similarity=0.183 Sum_probs=75.3
Q ss_pred eeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCC
Q 015254 173 AKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQ 251 (410)
Q Consensus 173 ~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~ 251 (410)
.+++..+|++|.|.........+.+. .++...+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|.
T Consensus 346 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~-------- 415 (572)
T PLN02990 346 GDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGD-------- 415 (572)
T ss_pred cCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccC--------
Confidence 46889999999986543344555554 47889999999999888877666 35678999998766666664
Q ss_pred CEEEEEEEceEEecCC--ee--EEEEecCCCC-CcceeeEEEEeEEEecCC
Q 015254 252 PVVGIRVRECNISNTS--NG--VRIKTWPASY-PGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 252 ~v~nv~i~n~~~~~~~--~g--i~iks~~g~~-~g~v~nI~~~ni~~~~~~ 297 (410)
-...|+||++.-.. .| -.|.. ++.. ...-..+.|.|+++....
T Consensus 416 --a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 --AKVVLQNCNIVVRKPMKGQSCMITA-QGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred --ceEEEEccEEEEecCCCCCceEEEe-CCCCCCCCCceEEEEeeEEecCc
Confidence 34678899986421 11 22322 2221 123457889999998754
No 111
>PLN02671 pectinesterase
Probab=85.52 E-value=16 Score=36.29 Aligned_cols=110 Identities=12% Similarity=0.159 Sum_probs=68.7
Q ss_pred eeeEEEEeEEEECCCC----CCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCcc
Q 015254 173 AKNFTFQRVTVTAPEE----SLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKY 247 (410)
Q Consensus 173 ~~nv~i~n~~i~~~~~----~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~ 247 (410)
.+++..+|++|.|... ........+. ..+++.+.+|.|....|-+....+ .-.++||++.+.-.+-+|.
T Consensus 153 a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~g--R~yf~~CyIeG~VDFIFG~---- 226 (359)
T PLN02671 153 SDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDETG--SHYFYQCYIQGSVDFIFGN---- 226 (359)
T ss_pred CCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeCCC--cEEEEecEEEEeccEEecc----
Confidence 4667778888887521 1223344443 368999999999988887765553 5688999988665665654
Q ss_pred CCCCCEEEEEEEceEEecCC--eeEEEEecCCCCCcceeeEEEEeEEEec
Q 015254 248 QNEQPVVGIRVRECNISNTS--NGVRIKTWPASYPGTASDLHFEDIKMNN 295 (410)
Q Consensus 248 ~~~~~v~nv~i~n~~~~~~~--~gi~iks~~g~~~g~v~nI~~~ni~~~~ 295 (410)
-...|+||++.... .| .|..........-....|.|+++..
T Consensus 227 ------g~A~Fe~C~I~s~~~~~G-~ITA~~r~~~~~~~GfvF~~C~itg 269 (359)
T PLN02671 227 ------AKSLYQDCVIQSTAKRSG-AIAAHHRDSPTEDTGFSFVNCVING 269 (359)
T ss_pred ------eeEEEeccEEEEecCCCe-EEEeeccCCCCCCccEEEEccEEcc
Confidence 34678888887532 23 2222110011223567888998876
No 112
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=85.13 E-value=14 Score=38.76 Aligned_cols=111 Identities=9% Similarity=0.066 Sum_probs=61.2
Q ss_pred eeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCCC
Q 015254 173 AKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNEQ 251 (410)
Q Consensus 173 ~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~~ 251 (410)
.+++..+|++|.|.......+.+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-.+-+|.
T Consensus 311 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~-------- 380 (539)
T PLN02995 311 GLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQ--RQFYRECYIYGTVDFIFGN-------- 380 (539)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCC--ceEEEeeEEeeccceEecc--------
Confidence 45677777777775432233444443 356777777777776666655542 3477777776555555543
Q ss_pred CEEEEEEEceEEecCCe----eEEEEecCCC-CCcceeeEEEEeEEEecC
Q 015254 252 PVVGIRVRECNISNTSN----GVRIKTWPAS-YPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 252 ~v~nv~i~n~~~~~~~~----gi~iks~~g~-~~g~v~nI~~~ni~~~~~ 296 (410)
....|+||++.-... .-.|.. +++ ....-..+.|.|+++...
T Consensus 381 --a~avf~~C~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 381 --AAAVFQNCIILPRRPLKGQANVITA-QGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred --cceEEeccEEEEecCCCCCcceEec-CCCCCCCCCceEEEEeeEEecC
Confidence 234577777754210 112221 221 112345677777777764
No 113
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=84.94 E-value=16 Score=38.78 Aligned_cols=113 Identities=10% Similarity=0.137 Sum_probs=71.1
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.......+.+.+. .++...+.+|.|....|-+..++ ..-.+++|++.+.-.+-+|.
T Consensus 358 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 428 (587)
T PLN02484 358 TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGN------- 428 (587)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceeccc-------
Confidence 456788888888886543334455543 36888899999988888776665 34578888887665665654
Q ss_pred CCEEEEEEEceEEecCC----eeEEEEecCCC-CCcceeeEEEEeEEEecCC
Q 015254 251 QPVVGIRVRECNISNTS----NGVRIKTWPAS-YPGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~----~gi~iks~~g~-~~g~v~nI~~~ni~~~~~~ 297 (410)
-...|+||++.-.. ..-.|.. ++. ....-..+.|.|+++....
T Consensus 429 ---a~avfq~C~i~~~~~~~~~~~~ITA-q~r~~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 429 ---AAVVLQNCSIYARKPMAQQKNTITA-QNRKDPNQNTGISIHACRILAAS 476 (587)
T ss_pred ---ceeEEeccEEEEecCCCCCceEEEe-cCCCCCCCCcEEEEEeeEEecCC
Confidence 34568888886421 1112222 221 1133467888999887643
No 114
>PLN02314 pectinesterase
Probab=84.55 E-value=17 Score=38.61 Aligned_cols=113 Identities=10% Similarity=0.135 Sum_probs=75.3
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.......+.+.+. .++...+.+|.|....|-+..+++ .-..++|++.+.-.+-+|.
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~--rq~y~~C~I~GtvDFIFG~------- 433 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSN--RQFYRDCDITGTIDFIFGN------- 433 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCC--CEEEEeeEEEeccceeccC-------
Confidence 457788999999986533334555554 468899999999998888777763 4588999998766666654
Q ss_pred CCEEEEEEEceEEecCCe----eEEEEecCCCC-CcceeeEEEEeEEEecCC
Q 015254 251 QPVVGIRVRECNISNTSN----GVRIKTWPASY-PGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~~----gi~iks~~g~~-~g~v~nI~~~ni~~~~~~ 297 (410)
-...|+||.+.-... .-.|.. ++.. ...-..+.|.|+++....
T Consensus 434 ---a~avf~~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 434 ---AAVVFQNCNIQPRQPLPNQFNTITA-QGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ---ceeeeeccEEEEecCCCCCCceEec-CCCCCCCCCCEEEEEeeEEecCC
Confidence 346788999864210 012322 2221 134467889999998754
No 115
>PLN02176 putative pectinesterase
Probab=84.48 E-value=21 Score=35.12 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=73.1
Q ss_pred CeeeEEEEeEEEECCCCC------CCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeec
Q 015254 172 GAKNFTFQRVTVTAPEES------LNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSL 244 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~------~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~ 244 (410)
.++++..+|++|.|.... ...+.+.+. ..+...+.+|.|....|-+.... ..-.+++|++.+.-.+-+|.
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~- 196 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGY- 196 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecC-
Confidence 468899999999986421 123344433 36899999999999888876665 36889999998666666654
Q ss_pred CccCCCCCEEEEEEEceEEecCC--------eeEEEEecCCCC-CcceeeEEEEeEEEecC
Q 015254 245 GKYQNEQPVVGIRVRECNISNTS--------NGVRIKTWPASY-PGTASDLHFEDIKMNNV 296 (410)
Q Consensus 245 g~~~~~~~v~nv~i~n~~~~~~~--------~gi~iks~~g~~-~g~v~nI~~~ni~~~~~ 296 (410)
....|+||++.-.. .| .|.. ++.. ...-....|.|+++...
T Consensus 197 ---------a~a~Fe~C~I~s~~~~~~~~~~~g-~ITA-~~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 197 ---------AQSIFEGCTLKLTLGIYPPNEPYG-TITA-QGRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred ---------ceEEEeccEEEEecccCCCCCCcE-EEEe-CCCCCCCCCcEEEEECCEEccC
Confidence 34678999987421 12 1222 2111 12335788999999864
No 116
>PLN02197 pectinesterase
Probab=84.36 E-value=21 Score=37.86 Aligned_cols=113 Identities=8% Similarity=0.129 Sum_probs=75.8
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.......+.+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-.+-+|.
T Consensus 362 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------- 432 (588)
T PLN02197 362 ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIFGK------- 432 (588)
T ss_pred ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccccc-------
Confidence 357888999999986543344555554 478999999999998888877763 4589999998665666654
Q ss_pred CCEEEEEEEceEEecCC--ee--EEEEecCCCC--CcceeeEEEEeEEEecCC
Q 015254 251 QPVVGIRVRECNISNTS--NG--VRIKTWPASY--PGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~--~g--i~iks~~g~~--~g~v~nI~~~ni~~~~~~ 297 (410)
....|+||++.-.. .| -.| +-++.. ...-..+.|.|+++....
T Consensus 433 ---a~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 433 ---SATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred ---eeeeeecCEEEEecCCCCCceeE-ECCCCCCCCCCCcEEEEEccEEecCC
Confidence 23678899886321 11 123 223321 123457889999998744
No 117
>PLN02497 probable pectinesterase
Probab=83.49 E-value=22 Score=34.95 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=71.6
Q ss_pred CeeeEEEEeEEEECCCCC-------CCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEee
Q 015254 172 GAKNFTFQRVTVTAPEES-------LNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGS 243 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~-------~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs 243 (410)
..+++..+|++|.|.... .....+.+. ..+...+.+|.|....|-+.... ..-.+++|++.+.-.+-+|.
T Consensus 113 ~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~ 190 (331)
T PLN02497 113 LADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIFGS 190 (331)
T ss_pred ecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEccC
Confidence 456899999999986421 112333332 36889999999999888776554 35788999998665666654
Q ss_pred cCccCCCCCEEEEEEEceEEecCCe------eEEEEecCCCCCcceeeEEEEeEEEecC
Q 015254 244 LGKYQNEQPVVGIRVRECNISNTSN------GVRIKTWPASYPGTASDLHFEDIKMNNV 296 (410)
Q Consensus 244 ~g~~~~~~~v~nv~i~n~~~~~~~~------gi~iks~~g~~~g~v~nI~~~ni~~~~~ 296 (410)
-...|+||++..... .-.|..........-....|.|+++...
T Consensus 191 ----------g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 191 ----------GQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred ----------ceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 346788888874321 1123221101113345678889998863
No 118
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=83.03 E-value=45 Score=33.61 Aligned_cols=68 Identities=13% Similarity=0.081 Sum_probs=32.8
Q ss_pred ceeEEEEeEEEcCC--ceEEEeecCcc---------------CCCCCEEEEEEEceEEecCCeeEEEEecCCCCCcceee
Q 015254 223 TQQMEINKIDCGPG--HGISVGSLGKY---------------QNEQPVVGIRVRECNISNTSNGVRIKTWPASYPGTASD 285 (410)
Q Consensus 223 ~~nv~I~n~~~~~~--~Gi~igs~g~~---------------~~~~~v~nv~i~n~~~~~~~~gi~iks~~g~~~g~v~n 285 (410)
+-|+.++|+..-.. +|+.+|+.... +-..-..|=.|+|+..+++. |+.+ |..+++++|+|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~l-GVG~--~~DG~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSL-GVGI--GMDGKGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-S-SESC--EEECCS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccc-eeee--eecCCCceEee
Confidence 46788888876543 47777664220 01112345567888877765 4433 32233588888
Q ss_pred EEEEeEEE
Q 015254 286 LHFEDIKM 293 (410)
Q Consensus 286 I~~~ni~~ 293 (410)
|+.+++.-
T Consensus 340 i~~~d~~g 347 (549)
T PF09251_consen 340 ITVQDCAG 347 (549)
T ss_dssp EEEES-SS
T ss_pred EEeecccC
Confidence 87776543
No 119
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=83.00 E-value=19 Score=38.21 Aligned_cols=113 Identities=10% Similarity=0.167 Sum_probs=70.3
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.........+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-.+-+|.
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~--rq~y~~c~I~GtvDFIFG~------- 430 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN--RQFFVKCHITGTVDFIFGN------- 430 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC--cEEEEeeEEeeccceeccc-------
Confidence 346788888888886543334444443 367888888888887787766653 3478888887665555553
Q ss_pred CCEEEEEEEceEEecCCe--e--EEEEecCCCC-CcceeeEEEEeEEEecCC
Q 015254 251 QPVVGIRVRECNISNTSN--G--VRIKTWPASY-PGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~~--g--i~iks~~g~~-~g~v~nI~~~ni~~~~~~ 297 (410)
..+.|+||++.-... | -.|.. +++. ...-..+.|.|+++....
T Consensus 431 ---a~avfq~c~i~~r~~~~~~~~~iTA-qgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 431 ---AAAVLQDCDINARRPNSGQKNMVTA-QGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred ---eeEEEEccEEEEecCCCCCcceEEe-cCCCCCCCCceEEEEecEEecCC
Confidence 346688888864321 1 12322 2221 123457888888887644
No 120
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=81.94 E-value=6.8 Score=37.21 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=23.1
Q ss_pred ceeEEEEeEEEcCCceEEEeec---CccCCCCCEEEEEEEceEEecCC
Q 015254 223 TQQMEINKIDCGPGHGISVGSL---GKYQNEQPVVGIRVRECNISNTS 267 (410)
Q Consensus 223 ~~nv~I~n~~~~~~~Gi~igs~---g~~~~~~~v~nv~i~n~~~~~~~ 267 (410)
|.|+.|.|+...++.|+-||-- |.| -.-.+|....|+.+.+..
T Consensus 300 cdnfvidni~mvnsagmligygvikg~y--lsipqnfkln~i~ldn~~ 345 (464)
T PRK10123 300 CDNFVIDNIEMINSAGMLIGYGVIKGKY--LSIPQNFKLNNIQLDNTH 345 (464)
T ss_pred ccceEEeccccccccccEEEeeeeeccE--ecccccceeceEeecccc
Confidence 6677777777766656544321 111 122355666666666543
No 121
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=78.30 E-value=79 Score=32.94 Aligned_cols=113 Identities=11% Similarity=0.118 Sum_probs=76.3
Q ss_pred CeeeEEEEeEEEECCCCCCCCCceEee-ccccEEEEeeEEecCCceEEecCCceeEEEEeEEEcCCceEEEeecCccCCC
Q 015254 172 GAKNFTFQRVTVTAPEESLNTDGIHVG-RSSGVTITDSKIGTGDDCISIGDGTQQMEINKIDCGPGHGISVGSLGKYQNE 250 (410)
Q Consensus 172 ~~~nv~i~n~~i~~~~~~~n~DGi~~~-~s~nv~I~n~~i~~gdD~i~i~s~~~nv~I~n~~~~~~~Gi~igs~g~~~~~ 250 (410)
..+++..+|++|.|.........+.+. .++...+.+|.|....|-+..+++ .-.+++|++.+.-.+-+|.
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG~------- 338 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFGN------- 338 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEecc-------
Confidence 457899999999986543344555554 478999999999998888877763 4588999998666666664
Q ss_pred CCEEEEEEEceEEecCCe--e--EEEEecCCC-CCcceeeEEEEeEEEecCC
Q 015254 251 QPVVGIRVRECNISNTSN--G--VRIKTWPAS-YPGTASDLHFEDIKMNNVS 297 (410)
Q Consensus 251 ~~v~nv~i~n~~~~~~~~--g--i~iks~~g~-~~g~v~nI~~~ni~~~~~~ 297 (410)
....|+||++.-... + -.|.. +++ ....-..+.|.|+++....
T Consensus 339 ---a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 339 ---AAAVFQNCYLFLRRPHGKSYNVILA-NGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred ---cceeecccEEEEecCCCCCceEEEe-cCCCCCCCCceEEEEeeEEecCC
Confidence 235688888864221 1 12322 221 1133467889999998754
No 122
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=75.88 E-value=1.6 Score=28.97 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=16.4
Q ss_pred CcchhhHHHHHHHHHhhhcccee
Q 015254 1 MAKSNILALFLSLLMLSAAAALD 23 (410)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~ 23 (410)
|||..++.++++.++.++++++.
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN~ 23 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQANY 23 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhcc
Confidence 89877777777766677776654
No 123
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=61.39 E-value=94 Score=27.78 Aligned_cols=14 Identities=7% Similarity=-0.287 Sum_probs=7.3
Q ss_pred ceeEEEEeEEEcCC
Q 015254 223 TQQMEINKIDCGPG 236 (410)
Q Consensus 223 ~~nv~I~n~~~~~~ 236 (410)
-.|.+|||+.|.+.
T Consensus 63 F~ntlIENNVfDG~ 76 (198)
T PF08480_consen 63 FYNTLIENNVFDGV 76 (198)
T ss_pred ccccEEEeeeeccc
Confidence 34555555555543
No 124
>PRK13792 lysozyme inhibitor; Provisional
Probab=58.58 E-value=15 Score=30.76 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=12.7
Q ss_pred CcchhhHHHHHHHHHhhhccce
Q 015254 1 MAKSNILALFLSLLMLSAAAAL 22 (410)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~ 22 (410)
|||.++++++.+.+++++++..
T Consensus 1 mk~~l~~ll~~~~~lLsaCs~~ 22 (127)
T PRK13792 1 MKKALWLLLAAVPVVLVACGGS 22 (127)
T ss_pred ChhHHHHHHHHHHhheecccCC
Confidence 8877555555555555555544
No 125
>PF07437 YfaZ: YfaZ precursor; InterPro: IPR009998 This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=54.81 E-value=9.8 Score=33.91 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=17.0
Q ss_pred CcchhhHHHHHHHHHhhhccceeeE
Q 015254 1 MAKSNILALFLSLLMLSAAAALDVD 25 (410)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~ 25 (410)
|||..++.++.+++++.+|.|..++
T Consensus 1 m~k~~~a~~~~l~~~s~~a~A~~~~ 25 (180)
T PF07437_consen 1 MKKFLLASAAALLLVSASANAISLS 25 (180)
T ss_pred CchHHHHHHHHHHHHhhhhheeecc
Confidence 8988877666666666666665554
No 126
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=48.53 E-value=21 Score=19.60 Aligned_cols=18 Identities=22% Similarity=0.505 Sum_probs=9.8
Q ss_pred EEEEEceEEecCCe-eEEE
Q 015254 255 GIRVRECNISNTSN-GVRI 272 (410)
Q Consensus 255 nv~i~n~~~~~~~~-gi~i 272 (410)
+++|+++++.+... |+.+
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i 21 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYI 21 (26)
T ss_pred CEEEECCEEEeCCCCcEEE
Confidence 45556666655554 5544
No 127
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=33.34 E-value=28 Score=27.57 Aligned_cols=9 Identities=44% Similarity=0.534 Sum_probs=4.9
Q ss_pred CcchhhHHH
Q 015254 1 MAKSNILAL 9 (410)
Q Consensus 1 m~~~~~~~~ 9 (410)
|..|.+|++
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 776654333
No 128
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=31.54 E-value=1.6e+02 Score=23.95 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=42.4
Q ss_pred EeeccEEEEeEEEecc---CcceEEEeCeeeEEEEeEEEECCCCCCCCCceEeeccccEEEEe-eEEecCCceE
Q 015254 148 NAITNSVVQDVTSLNS---KQFHINVIGAKNFTFQRVTVTAPEESLNTDGIHVGRSSGVTITD-SKIGTGDDCI 217 (410)
Q Consensus 148 ~~~~nv~I~~i~i~ns---~~~~i~~~~~~nv~i~n~~i~~~~~~~n~DGi~~~~s~nv~I~n-~~i~~gdD~i 217 (410)
....+..+.+-.+.+. ..+++.+..+.+..+.+..+. .. .. .+|++++.+....+.+ ..+....|++
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi 143 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGI 143 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcE
Confidence 4556666666666665 368888887666655555555 11 12 6888888877777777 4444445554
No 129
>PF11777 DUF3316: Protein of unknown function (DUF3316); InterPro: IPR016879 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.98 E-value=81 Score=25.68 Aligned_cols=13 Identities=46% Similarity=0.450 Sum_probs=8.0
Q ss_pred CcchhhHHHHHHH
Q 015254 1 MAKSNILALFLSL 13 (410)
Q Consensus 1 m~~~~~~~~~~~~ 13 (410)
|||.+++++++++
T Consensus 1 MKk~~ll~~~ll~ 13 (114)
T PF11777_consen 1 MKKIILLASLLLL 13 (114)
T ss_pred CchHHHHHHHHHH
Confidence 8877766644443
No 130
>PRK09752 adhesin; Provisional
Probab=30.50 E-value=9.3e+02 Score=28.11 Aligned_cols=61 Identities=7% Similarity=0.026 Sum_probs=28.9
Q ss_pred eeEEEEeEEEECCCCCCCCCceEeeccc-----cEEEEeeEEecCC----ceEEecCCceeEEEEeEEEc
Q 015254 174 KNFTFQRVTVTAPEESLNTDGIHVGRSS-----GVTITDSKIGTGD----DCISIGDGTQQMEINKIDCG 234 (410)
Q Consensus 174 ~nv~i~n~~i~~~~~~~n~DGi~~~~s~-----nv~I~n~~i~~gd----D~i~i~s~~~nv~I~n~~~~ 234 (410)
..+.+.++.+.+..-..+.-.|...... .+.|.|+.|.+.. .+=+|.....++.|.||.|.
T Consensus 121 ~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~ng~vtIsnS~F~ 190 (1250)
T PRK09752 121 STLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFD 190 (1250)
T ss_pred ceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEccCcEEEEeeEEe
Confidence 3467777777753221222333332211 2667777766531 11123322235666777664
No 131
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=29.72 E-value=1.9e+02 Score=23.81 Aligned_cols=54 Identities=30% Similarity=0.342 Sum_probs=30.1
Q ss_pred CCcEEEEcCceEEeeeeEecCCCCccEEEEEeeEEEeeCCccCccCCCccEEEEeeeeEEEEeCeEe
Q 015254 53 TPSKVLIPQGTYQLSPVTMEGPCKAAIELQVKGTLKALTDPANVKDAGSWVSFNKIEHLTVSGGGTF 119 (410)
Q Consensus 53 ~g~~v~~P~G~Y~i~~l~l~~~~~s~v~l~~~G~i~~~~~~~~~~~~~~~i~~~~~~nv~I~G~G~i 119 (410)
.+..|+||+|...+=....+ .--.|.++|+|.+..+.. .-+. ++.|.+.|.|.+
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~----~l~~l~I~G~L~f~~~~~------~~L~---a~~I~V~~Gg~l 64 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTP----KLGSLIIGGTLIFDDDRD------ITLR---AEYILVEGGGRL 64 (125)
T ss_pred CCCEEEECCCCEEEEcCCCh----heeEEEEEEEEEEccCCC------CEEE---EEEEEECCCCeE
Confidence 36899999997543111111 122455689998865421 1222 356777775443
No 132
>PRK15058 cytochrome b562; Provisional
Probab=29.48 E-value=17 Score=30.46 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=13.1
Q ss_pred CCCcCCchhHHHHHHHHHH
Q 015254 29 HGAKQNADISQALRDAWKE 47 (410)
Q Consensus 29 ~Ga~gdtDdt~aiq~Ai~~ 47 (410)
|++...+++.+.+++|+..
T Consensus 36 ~k~~~~A~~a~~~k~al~~ 54 (128)
T PRK15058 36 LKVVEKTDNAAEVKDALTK 54 (128)
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 5555557788888887754
No 133
>PRK15240 resistance to complement killing; Provisional
Probab=28.55 E-value=52 Score=29.41 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=10.6
Q ss_pred CcchhhHHHHHHHHHhh
Q 015254 1 MAKSNILALFLSLLMLS 17 (410)
Q Consensus 1 m~~~~~~~~~~~~~~~~ 17 (410)
|||.+++++++++++..
T Consensus 1 Mkk~~~~~~~~~~~~~~ 17 (185)
T PRK15240 1 MKKIVLSSLLLSAAGLA 17 (185)
T ss_pred CchhHHHHHHHHHHHhc
Confidence 89887766655544433
No 134
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=28.07 E-value=60 Score=22.19 Aligned_cols=6 Identities=33% Similarity=0.457 Sum_probs=2.5
Q ss_pred HHHHHH
Q 015254 39 QALRDA 44 (410)
Q Consensus 39 ~aiq~A 44 (410)
+||+.|
T Consensus 37 ~ai~~a 42 (48)
T PRK10081 37 NAISGA 42 (48)
T ss_pred HHHHHH
Confidence 344444
No 135
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=27.82 E-value=31 Score=23.39 Aligned_cols=11 Identities=45% Similarity=0.709 Sum_probs=6.1
Q ss_pred CcchhhHHHHH
Q 015254 1 MAKSNILALFL 11 (410)
Q Consensus 1 m~~~~~~~~~~ 11 (410)
|||+++|+.||
T Consensus 3 lKKsllLlffl 13 (46)
T PF03032_consen 3 LKKSLLLLFFL 13 (46)
T ss_pred chHHHHHHHHH
Confidence 67665554443
No 136
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=26.20 E-value=79 Score=32.08 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=17.9
Q ss_pred CceEeeccccEEEEeeEEecCCceEEecC
Q 015254 193 DGIHVGRSSGVTITDSKIGTGDDCISIGD 221 (410)
Q Consensus 193 DGi~~~~s~nv~I~n~~i~~gdD~i~i~s 221 (410)
.|+.+....|=+|+...|+.++.++-+..
T Consensus 419 sgvqirtGsNP~i~~NkIWggqNGvLVyn 447 (625)
T KOG1777|consen 419 SGVQIRTGSNPKIRRNKIWGGQNGVLVYN 447 (625)
T ss_pred cceEeecCCCCeeeecceecCcccEEEEc
Confidence 34555545566677777777776665544
No 137
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=25.18 E-value=63 Score=30.30 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=9.1
Q ss_pred cCceEEee-eeEe
Q 015254 60 PQGTYQLS-PVTM 71 (410)
Q Consensus 60 P~G~Y~i~-~l~l 71 (410)
|.|+|+++ .|.+
T Consensus 154 p~Gty~LgadldA 166 (250)
T PF05342_consen 154 PSGTYKLGADLDA 166 (250)
T ss_pred CCceEEECCccch
Confidence 88999886 5555
No 138
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=25.05 E-value=65 Score=19.53 Aligned_cols=16 Identities=25% Similarity=0.222 Sum_probs=6.3
Q ss_pred hHHHHHHHHHhhhccc
Q 015254 6 ILALFLSLLMLSAAAA 21 (410)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (410)
++++.++++-.+++.|
T Consensus 11 Ai~c~LL~s~Ls~VkA 26 (30)
T PF11466_consen 11 AIVCVLLFSHLSSVKA 26 (30)
T ss_dssp HHHHHHHHHHTTTT--
T ss_pred HHHHHHHHHHhhHHHh
Confidence 4444444444444334
No 139
>COG5510 Predicted small secreted protein [Function unknown]
Probab=24.11 E-value=70 Score=21.34 Aligned_cols=8 Identities=38% Similarity=0.492 Sum_probs=3.9
Q ss_pred CcchhhHH
Q 015254 1 MAKSNILA 8 (410)
Q Consensus 1 m~~~~~~~ 8 (410)
|||.++++
T Consensus 2 mk~t~l~i 9 (44)
T COG5510 2 MKKTILLI 9 (44)
T ss_pred chHHHHHH
Confidence 56544433
No 140
>PF10614 CsgF: Type VIII secretion system (T8SS), CsgF protein; InterPro: IPR018893 Fimbriae are cell-surface protein polymers, of e.g. Escherichia coli and Salmonella spp, that mediate interactions important for host and environmental persistence, development of biofilms, motility, colonisation and invasion of cells, and conjugation. Four general assembly pathways for different fimbriae have been proposed, one of which is extracellular nucleation-precipitation (ENP), that differs from the others in that fibre-growth occurs extracellularly. Thin aggregative fimbriae (Tafi) are the only fimbriae dependent on the ENP pathway. Tafi were first identified in Salmonella spp. and the controlling operon termed agf; however subsequent isolation of the homologous operon in E. coli led to its being called csg. Tafi are known as curli because, in the absence of extracellular polysaccharides, their morphology appears curled; however, when expressed with such polysaccharides their morphology appears as a tangled amorphous matrix []. CsgF is one of three putative curli assembly factors appearing to act as a nucleator protein. Unlike eukaryotic amyloid formation, curli biogenesis is a productive pathway requiring a specific assembly machinery [].
Probab=24.03 E-value=44 Score=28.54 Aligned_cols=21 Identities=48% Similarity=0.526 Sum_probs=13.6
Q ss_pred CcchhhHHHHHHHHHhhhccc
Q 015254 1 MAKSNILALFLSLLMLSAAAA 21 (410)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~ 21 (410)
||+..+++++++.+++..+.|
T Consensus 1 mk~~~l~a~l~~~~~~~~a~A 21 (142)
T PF10614_consen 1 MKYRGLLALLLLLLAASSAQA 21 (142)
T ss_pred CcEeHHHHHHHHHHcccccch
Confidence 888888777766655544433
No 141
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=24.02 E-value=77 Score=28.43 Aligned_cols=15 Identities=47% Similarity=0.540 Sum_probs=9.3
Q ss_pred CcchhhHHHHHHHHH
Q 015254 1 MAKSNILALFLSLLM 15 (410)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (410)
|||...|++++++++
T Consensus 1 ~~~~~~~~~~~~~~~ 15 (189)
T PF12099_consen 1 MKKIRILFLLLLLFC 15 (189)
T ss_pred CceehHHHHHHHHHH
Confidence 898776665544433
No 142
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=22.87 E-value=51 Score=28.37 Aligned_cols=15 Identities=47% Similarity=0.594 Sum_probs=9.2
Q ss_pred CcchhhHHHHHHHHH
Q 015254 1 MAKSNILALFLSLLM 15 (410)
Q Consensus 1 m~~~~~~~~~~~~~~ 15 (410)
|+|.+++++++++++
T Consensus 1 M~~~~~~~~~~~~~~ 15 (162)
T PF12276_consen 1 MKRRLLLALALALLA 15 (162)
T ss_pred CchHHHHHHHHHHHH
Confidence 787766666555443
No 143
>PRK09810 entericidin A; Provisional
Probab=22.28 E-value=67 Score=21.21 Aligned_cols=8 Identities=25% Similarity=0.372 Sum_probs=3.8
Q ss_pred CcchhhHH
Q 015254 1 MAKSNILA 8 (410)
Q Consensus 1 m~~~~~~~ 8 (410)
|||..+++
T Consensus 2 Mkk~~~l~ 9 (41)
T PRK09810 2 MKRLIVLV 9 (41)
T ss_pred hHHHHHHH
Confidence 55544444
No 144
>PRK09980 ompL outer membrane porin L; Provisional
Probab=21.63 E-value=39 Score=31.37 Aligned_cols=28 Identities=32% Similarity=0.253 Sum_probs=14.5
Q ss_pred CcchhhHHHHHHHHHhhhccceeeEeec
Q 015254 1 MAKSNILALFLSLLMLSAAAALDVDVTK 28 (410)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~v~d 28 (410)
|+|...+++++.++..++++|+++|++.
T Consensus 1 ~~~~~~~~~~~sl~s~~~~~aatiD~Rh 28 (230)
T PRK09980 1 MKKLNTIVLLSSLTSASVFAGAYVENRE 28 (230)
T ss_pred CcceeeeeehhhhhhhhhhhceEEEeee
Confidence 7776654444333322333345777665
No 145
>PF10836 DUF2574: Protein of unknown function (DUF2574) ; InterPro: IPR020386 This entry contains proteins with no known function.
Probab=21.31 E-value=89 Score=24.14 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=28.8
Q ss_pred Ccchhh-HHHHHHHHHhhhcc-ceeeEeecCCCcCC-chhHHHHHHHHHHHhhc
Q 015254 1 MAKSNI-LALFLSLLMLSAAA-ALDVDVTKHGAKQN-ADISQALRDAWKEACAA 51 (410)
Q Consensus 1 m~~~~~-~~~~~~~~~~~~~~-~~~~~v~d~Ga~gd-tDdt~aiq~Ai~~a~~~ 51 (410)
|||..+ -+++|.--+++++. +.+-..+--|-+.. |-.++-+..-+.+.|.+
T Consensus 1 Mkk~ll~Gii~laYGls~P~faSdTATLtIsGrv~~PTCS~dvVn~~~QQrCGq 54 (93)
T PF10836_consen 1 MKKYLLMGIIVLAYGLSSPAFASDTATLTISGRVSPPTCSTDVVNNQLQQRCGQ 54 (93)
T ss_pred CCchhhhhhhHhhhhcccccccccceEEEEcceEcCCcccHHHhccchhhhhcc
Confidence 898544 44445444444443 33444444565555 66777676666666754
No 146
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=21.26 E-value=1.5e+02 Score=23.36 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHhhcCCCcEEEEcC
Q 015254 36 DISQALRDAWKEACAATTPSKVLIPQ 61 (410)
Q Consensus 36 Ddt~aiq~Ai~~a~~~~~g~~v~~P~ 61 (410)
||-.+=.+||.+||+..|.++|+-|-
T Consensus 60 ~dy~~~~~~L~~al~~~G~G~LvHP~ 85 (93)
T PF07157_consen 60 DDYEAQRDALIAALEAPGPGELVHPW 85 (93)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEecCC
Confidence 34444444555667777767777763
No 147
>PRK10159 outer membrane phosphoporin protein E; Provisional
Probab=20.95 E-value=65 Score=31.82 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=15.2
Q ss_pred CcchhhHHHHHHHHHhhhcccee------eEeecCCC
Q 015254 1 MAKSNILALFLSLLMLSAAAALD------VDVTKHGA 31 (410)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~------~~v~d~Ga 31 (410)
|||+++.++++.+++++++.|.. -+|+=||.
T Consensus 1 Mkk~l~a~~~~a~~~~~~a~A~~vy~~d~ssvtlyG~ 37 (351)
T PRK10159 1 MKKSTLALVVMGIVASASVQAAEVYNKDGNKLDVYGK 37 (351)
T ss_pred CchhhHHHHHHHHHHhccccEEEEEECCCCEEEEEEE
Confidence 88866533333322332333443 55666774
No 148
>PF07986 TBCC: Tubulin binding cofactor C; InterPro: IPR012945 This domain is found in tubulin-binding cofactor C (or tubulin-specific chaperone C) (TBCC). TBCC is a folding cofactor that participates in tubulin biogenesis along with the other tubulin folding cofactors A (TBCA), B (TBCB), E (TBCE) and D (TBCD), as well as the GTP-binding protein Arl2 [, ].; PDB: 2BX6_A 3BH7_B 3BH6_B 2YUH_A.
Probab=20.12 E-value=4.8e+02 Score=21.16 Aligned_cols=13 Identities=8% Similarity=0.141 Sum_probs=7.1
Q ss_pred eEEEEeeccEEEE
Q 015254 144 NLSFNAITNSVVQ 156 (410)
Q Consensus 144 ~i~~~~~~nv~I~ 156 (410)
.+.+.+|+|.+|.
T Consensus 41 sv~i~~c~n~~i~ 53 (120)
T PF07986_consen 41 SVFIENCENCTII 53 (120)
T ss_dssp EEEEES-ECEEEE
T ss_pred eEEEecCCceEEE
Confidence 4666666666653
Done!