Query 015255
Match_columns 410
No_of_seqs 309 out of 1822
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0713 Molecular chaperone (D 100.0 5.8E-53 1.3E-57 412.5 9.9 315 15-365 12-326 (336)
2 COG0484 DnaJ DnaJ-class molecu 100.0 1.6E-47 3.5E-52 382.6 16.7 254 17-290 2-283 (371)
3 KOG0712 Molecular chaperone (D 100.0 8.3E-43 1.8E-47 344.6 13.2 243 18-293 3-274 (337)
4 PRK14296 chaperone protein Dna 100.0 1.7E-41 3.6E-46 344.7 17.3 253 18-293 3-296 (372)
5 PRK14288 chaperone protein Dna 100.0 1.5E-41 3.3E-46 344.7 16.7 251 18-293 2-280 (369)
6 PTZ00037 DnaJ_C chaperone prot 100.0 4.6E-41 1E-45 345.6 17.4 248 12-293 21-296 (421)
7 PRK14298 chaperone protein Dna 100.0 2.7E-40 5.8E-45 336.4 17.5 253 18-293 4-287 (377)
8 PRK14276 chaperone protein Dna 100.0 7.4E-40 1.6E-44 333.6 17.6 253 18-293 3-292 (380)
9 PRK14287 chaperone protein Dna 100.0 8.9E-40 1.9E-44 332.0 17.6 251 18-293 3-284 (371)
10 PRK14278 chaperone protein Dna 100.0 1.2E-39 2.6E-44 331.8 17.9 251 19-293 3-285 (378)
11 PRK14285 chaperone protein Dna 100.0 9.9E-40 2.2E-44 331.0 17.0 251 19-293 3-288 (365)
12 PRK14286 chaperone protein Dna 100.0 1.2E-39 2.7E-44 331.1 17.2 252 18-293 3-292 (372)
13 PRK14282 chaperone protein Dna 100.0 1.3E-39 2.9E-44 330.6 17.3 254 18-293 3-298 (369)
14 PRK14280 chaperone protein Dna 100.0 1.6E-39 3.5E-44 330.7 17.2 251 19-293 4-289 (376)
15 PRK14277 chaperone protein Dna 100.0 1.8E-39 3.9E-44 331.4 17.5 253 18-293 4-301 (386)
16 PRK14297 chaperone protein Dna 100.0 4.3E-39 9.3E-44 328.1 18.7 254 18-293 3-294 (380)
17 PRK14294 chaperone protein Dna 100.0 2.6E-39 5.7E-44 328.1 16.1 252 18-293 3-286 (366)
18 PRK14279 chaperone protein Dna 100.0 4E-39 8.6E-44 329.3 16.4 252 18-293 8-315 (392)
19 TIGR02349 DnaJ_bact chaperone 100.0 1E-38 2.2E-43 322.5 17.6 251 20-293 1-289 (354)
20 PRK14284 chaperone protein Dna 100.0 1.2E-38 2.5E-43 325.9 15.9 251 19-293 1-300 (391)
21 PRK14281 chaperone protein Dna 100.0 2.2E-38 4.7E-43 324.5 17.6 253 19-293 3-308 (397)
22 PRK10767 chaperone protein Dna 100.0 2.8E-38 6E-43 321.2 17.4 252 18-293 3-284 (371)
23 PRK14290 chaperone protein Dna 100.0 4E-38 8.7E-43 319.4 18.5 254 19-293 3-292 (365)
24 PRK14301 chaperone protein Dna 100.0 3.6E-38 7.8E-43 320.5 17.1 251 18-292 3-285 (373)
25 PRK14295 chaperone protein Dna 100.0 3.6E-38 7.9E-43 322.0 16.3 251 18-292 8-307 (389)
26 PRK14291 chaperone protein Dna 100.0 4.8E-37 1E-41 313.2 18.3 250 18-293 2-297 (382)
27 PRK14283 chaperone protein Dna 100.0 7.2E-37 1.5E-41 311.5 15.5 253 18-293 4-292 (378)
28 PRK14300 chaperone protein Dna 100.0 4.8E-36 1E-40 304.8 17.1 250 19-293 3-287 (372)
29 PRK14293 chaperone protein Dna 100.0 5E-36 1.1E-40 305.0 15.2 250 19-293 3-289 (374)
30 PRK14289 chaperone protein Dna 100.0 8.4E-36 1.8E-40 304.5 15.9 254 18-293 4-300 (386)
31 PRK14292 chaperone protein Dna 100.0 8.3E-35 1.8E-39 295.8 16.2 249 19-293 2-284 (371)
32 PRK14299 chaperone protein Dna 100.0 4E-29 8.7E-34 246.5 13.8 210 18-293 3-223 (291)
33 PRK10266 curved DNA-binding pr 100.0 4.3E-28 9.3E-33 240.7 13.9 205 19-293 4-231 (306)
34 KOG0715 Molecular chaperone (D 99.9 3.6E-24 7.8E-29 210.8 10.2 227 18-282 42-286 (288)
35 KOG0716 Molecular chaperone (D 99.8 1.5E-19 3.3E-24 172.8 4.8 77 14-90 26-102 (279)
36 KOG0717 Molecular chaperone (D 99.8 1.2E-19 2.6E-24 183.7 3.1 78 15-92 4-82 (508)
37 KOG0691 Molecular chaperone (D 99.7 7E-19 1.5E-23 172.8 4.1 73 18-90 4-76 (296)
38 PTZ00341 Ring-infected erythro 99.7 1.4E-18 3.1E-23 189.0 6.4 78 13-91 567-644 (1136)
39 KOG0718 Molecular chaperone (D 99.7 4.7E-18 1E-22 172.2 3.6 78 16-93 6-86 (546)
40 PF00226 DnaJ: DnaJ domain; I 99.7 5.2E-18 1.1E-22 130.1 2.6 63 20-82 1-64 (64)
41 KOG0719 Molecular chaperone (D 99.7 2E-17 4.3E-22 155.2 5.9 110 16-138 11-122 (264)
42 TIGR03835 termin_org_DnaJ term 99.6 5.3E-16 1.1E-20 166.0 6.5 89 19-116 2-90 (871)
43 PHA03102 Small T antigen; Revi 99.6 5.3E-16 1.2E-20 139.2 5.2 84 19-116 5-90 (153)
44 smart00271 DnaJ DnaJ molecular 99.6 8.2E-16 1.8E-20 116.1 5.3 59 19-77 1-60 (60)
45 KOG0624 dsRNA-activated protei 99.6 5.6E-16 1.2E-20 153.1 2.4 75 16-91 391-468 (504)
46 COG2214 CbpA DnaJ-class molecu 99.6 1.4E-15 3.1E-20 139.8 4.6 69 17-85 4-73 (237)
47 cd06257 DnaJ DnaJ domain or J- 99.6 3.3E-15 7.2E-20 110.7 5.2 55 20-74 1-55 (55)
48 KOG0721 Molecular chaperone (D 99.5 8E-15 1.7E-19 136.6 4.7 71 17-87 97-167 (230)
49 KOG0714 Molecular chaperone (D 99.5 9.9E-14 2.1E-18 133.7 11.4 74 18-91 2-76 (306)
50 PRK05014 hscB co-chaperone Hsc 99.4 1.8E-13 3.9E-18 125.5 4.9 65 19-83 1-72 (171)
51 KOG0550 Molecular chaperone (D 99.4 1.1E-13 2.4E-18 139.5 3.4 70 15-84 369-439 (486)
52 PRK01356 hscB co-chaperone Hsc 99.4 2.7E-13 5.9E-18 123.7 4.0 66 19-84 2-72 (166)
53 KOG0722 Molecular chaperone (D 99.4 2.9E-13 6.3E-18 128.7 2.8 67 17-84 31-97 (329)
54 PRK03578 hscB co-chaperone Hsc 99.4 6.9E-13 1.5E-17 122.2 5.2 67 17-83 4-77 (176)
55 PRK00294 hscB co-chaperone Hsc 99.3 1E-12 2.3E-17 120.6 5.4 67 17-83 2-75 (173)
56 KOG0720 Molecular chaperone (D 99.3 8.8E-13 1.9E-17 134.2 3.8 67 18-85 234-300 (490)
57 PRK09430 djlA Dna-J like membr 99.1 2.6E-11 5.7E-16 118.6 3.9 59 16-74 197-262 (267)
58 PTZ00100 DnaJ chaperone protei 99.1 4.1E-11 8.9E-16 102.8 3.8 53 17-73 63-115 (116)
59 PHA02624 large T antigen; Prov 99.0 9E-11 2E-15 124.8 3.4 60 18-81 10-71 (647)
60 COG5407 SEC63 Preprotein trans 98.9 4.9E-10 1.1E-14 114.0 2.3 69 19-87 98-171 (610)
61 PRK01773 hscB co-chaperone Hsc 98.9 1.9E-09 4.2E-14 99.1 4.7 65 19-83 2-73 (173)
62 KOG1150 Predicted molecular ch 98.9 1.3E-09 2.9E-14 100.7 3.1 67 16-82 50-117 (250)
63 COG5269 ZUO1 Ribosome-associat 98.8 2.5E-09 5.3E-14 102.9 4.8 94 17-115 41-139 (379)
64 TIGR00714 hscB Fe-S protein as 98.8 4.7E-09 1E-13 95.2 4.5 54 31-84 3-61 (157)
65 KOG1789 Endocytosis protein RM 98.0 3.6E-06 7.9E-11 93.1 4.3 53 18-73 1280-1336(2235)
66 TIGR03835 termin_org_DnaJ term 98.0 1.5E-05 3.2E-10 86.9 8.4 65 219-293 697-768 (871)
67 KOG0568 Molecular chaperone (D 97.8 1.8E-05 3.8E-10 75.2 3.6 54 19-73 47-101 (342)
68 KOG0723 Molecular chaperone (D 97.2 0.00042 9.1E-09 58.5 4.4 50 22-75 59-108 (112)
69 KOG3192 Mitochondrial J-type c 95.9 0.0034 7.3E-08 56.6 1.4 66 18-83 7-79 (168)
70 COG1076 DjlA DnaJ-domain-conta 95.6 0.0073 1.6E-07 55.6 2.3 55 18-72 112-173 (174)
71 KOG0431 Auxilin-like protein a 94.8 0.027 5.9E-07 59.4 3.9 47 26-72 395-448 (453)
72 COG1076 DjlA DnaJ-domain-conta 93.4 0.027 5.8E-07 51.8 0.5 67 20-86 2-75 (174)
73 PF00684 DnaJ_CXXCXGXG: DnaJ c 91.2 0.27 5.9E-06 38.0 3.6 47 149-209 17-64 (66)
74 PF03656 Pam16: Pam16; InterP 84.1 1.3 2.9E-05 38.9 3.9 50 20-73 59-108 (127)
75 KOG0713 Molecular chaperone (D 83.7 0.29 6.2E-06 49.5 -0.5 41 252-292 229-272 (336)
76 KOG0724 Zuotin and related mol 76.2 1.9 4E-05 43.5 2.5 56 30-85 3-62 (335)
77 TIGR02642 phage_xxxx uncharact 75.3 2.4 5.1E-05 39.7 2.7 43 179-231 99-143 (186)
78 PF13446 RPT: A repeated domai 70.4 6.7 0.00014 29.6 3.7 26 20-45 6-31 (62)
79 PF11418 Scaffolding_pro: Phi2 68.5 22 0.00048 29.2 6.4 63 294-356 11-73 (97)
80 PF11833 DUF3353: Protein of u 65.6 8.6 0.00019 36.2 4.2 37 28-72 1-37 (194)
81 PF14687 DUF4460: Domain of un 61.1 11 0.00024 32.3 3.8 48 29-76 4-55 (112)
82 COG1422 Predicted membrane pro 59.1 20 0.00044 33.9 5.4 39 303-341 73-112 (201)
83 PF02183 HALZ: Homeobox associ 56.9 45 0.00097 24.0 5.7 37 313-349 2-38 (45)
84 PF05546 She9_MDM33: She9 / Md 56.6 49 0.0011 31.6 7.5 50 297-346 34-83 (207)
85 PF08053 Tna_leader: Tryptopha 56.0 5.8 0.00012 24.1 0.8 13 395-407 10-22 (24)
86 COG1777 Predicted transcriptio 55.0 1.3E+02 0.0028 28.9 9.9 111 246-356 62-179 (217)
87 PRK09806 tryptophanase leader 51.6 7.7 0.00017 24.0 0.9 15 395-409 10-24 (26)
88 PHA00489 scaffolding protein 51.3 49 0.0011 27.4 5.7 58 294-351 12-69 (101)
89 PF13094 CENP-Q: CENP-Q, a CEN 49.9 1.1E+02 0.0023 27.4 8.5 59 294-352 26-84 (160)
90 PF02996 Prefoldin: Prefoldin 49.1 73 0.0016 26.7 6.9 56 260-324 55-113 (120)
91 PLN03165 chaperone protein dna 47.4 32 0.0007 29.6 4.3 26 175-211 71-96 (111)
92 TIGR01216 ATP_synt_epsi ATP sy 46.9 1.8E+02 0.004 25.2 9.2 83 250-333 41-127 (130)
93 cd07651 F-BAR_PombeCdc15_like 46.1 1.2E+02 0.0026 28.9 8.7 58 296-353 151-208 (236)
94 PRK13452 atpC F0F1 ATP synthas 45.9 2.2E+02 0.0047 25.5 9.6 83 249-333 44-131 (145)
95 KOG1690 emp24/gp25L/p24 family 45.7 1.4E+02 0.003 28.5 8.5 38 253-290 88-131 (215)
96 PF03961 DUF342: Protein of un 45.2 1.6E+02 0.0036 30.9 10.2 71 286-356 325-408 (451)
97 PRK14158 heat shock protein Gr 44.4 1.3E+02 0.0029 28.4 8.3 59 282-340 23-85 (194)
98 cd00584 Prefoldin_alpha Prefol 43.6 90 0.002 26.7 6.7 61 260-327 65-126 (129)
99 PRK14154 heat shock protein Gr 42.4 1.2E+02 0.0025 29.1 7.7 44 296-339 53-96 (208)
100 cd00890 Prefoldin Prefoldin is 40.8 38 0.00083 28.7 3.9 21 261-281 66-86 (129)
101 PRK14139 heat shock protein Gr 40.7 1.4E+02 0.0031 27.9 7.9 47 294-340 31-77 (185)
102 PRK14143 heat shock protein Gr 39.8 1.5E+02 0.0032 28.9 8.1 47 294-340 66-112 (238)
103 PRK10884 SH3 domain-containing 39.5 3.4E+02 0.0074 25.8 12.3 57 294-353 92-148 (206)
104 PF03791 KNOX2: KNOX2 domain ; 39.0 1.4E+02 0.0031 22.2 6.1 27 309-335 9-35 (52)
105 PF15030 DUF4527: Protein of u 38.6 1.8E+02 0.0039 28.5 8.3 60 295-354 16-75 (277)
106 PHA03161 hypothetical protein; 38.3 1.2E+02 0.0027 27.4 6.7 50 294-343 60-109 (150)
107 KOG1962 B-cell receptor-associ 37.9 1.6E+02 0.0034 28.4 7.8 59 296-354 152-210 (216)
108 COG3883 Uncharacterized protei 37.8 2E+02 0.0044 28.5 8.7 59 294-352 44-105 (265)
109 PF04949 Transcrip_act: Transc 37.7 2.1E+02 0.0046 26.0 8.1 52 296-347 92-143 (159)
110 KOG0964 Structural maintenance 37.5 1.3E+02 0.0028 35.1 8.1 57 296-352 419-475 (1200)
111 COG4026 Uncharacterized protei 37.4 1.9E+02 0.0042 28.1 8.2 46 307-352 117-164 (290)
112 PRK14148 heat shock protein Gr 37.2 1.8E+02 0.004 27.4 8.1 46 295-340 40-85 (195)
113 cd07655 F-BAR_PACSIN The F-BAR 36.8 1.9E+02 0.0042 28.1 8.6 54 295-348 168-221 (258)
114 smart00787 Spc7 Spc7 kinetocho 36.7 1.7E+02 0.0036 29.6 8.3 54 294-347 210-263 (312)
115 PRK14162 heat shock protein Gr 35.9 1.9E+02 0.0041 27.3 8.0 47 294-340 38-84 (194)
116 PF09403 FadA: Adhesion protei 35.8 3.1E+02 0.0066 24.1 8.8 69 285-355 12-80 (126)
117 PF08317 Spc7: Spc7 kinetochor 35.7 1.8E+02 0.004 29.3 8.5 54 294-347 215-268 (325)
118 PRK14297 chaperone protein Dna 34.6 64 0.0014 33.3 5.1 38 244-281 223-262 (380)
119 KOG0964 Structural maintenance 33.5 1.3E+02 0.0028 35.1 7.4 53 293-345 326-378 (1200)
120 PF12325 TMF_TATA_bd: TATA ele 33.5 1.8E+02 0.0038 25.4 6.8 27 295-321 23-49 (120)
121 PF10498 IFT57: Intra-flagella 33.3 1.7E+02 0.0036 30.3 7.7 60 294-356 254-313 (359)
122 PF08614 ATG16: Autophagy prot 32.9 2.4E+02 0.0051 26.2 8.2 51 294-344 129-179 (194)
123 COG5552 Uncharacterized conser 32.8 98 0.0021 24.9 4.6 36 18-53 2-37 (88)
124 PF05278 PEARLI-4: Arabidopsis 32.5 1.8E+02 0.0039 28.9 7.4 41 297-337 202-242 (269)
125 PF10211 Ax_dynein_light: Axon 31.8 3.4E+02 0.0075 25.2 9.0 48 304-351 122-169 (189)
126 PRK14140 heat shock protein Gr 31.6 2.5E+02 0.0055 26.4 8.0 47 294-340 36-82 (191)
127 cd07647 F-BAR_PSTPIP The F-BAR 31.5 3E+02 0.0064 26.4 8.8 56 295-350 153-208 (239)
128 PF10805 DUF2730: Protein of u 30.9 2.9E+02 0.0063 23.2 7.7 52 294-345 48-101 (106)
129 PF13711 DUF4160: Domain of un 30.8 1E+02 0.0022 23.5 4.4 47 263-312 16-62 (66)
130 PRK14145 heat shock protein Gr 30.6 2.8E+02 0.006 26.3 8.1 46 294-339 44-89 (196)
131 PRK14144 heat shock protein Gr 30.5 2.4E+02 0.0052 26.8 7.7 47 293-339 43-89 (199)
132 PRK13446 atpC F0F1 ATP synthas 30.3 3.8E+02 0.0081 23.5 9.1 83 252-336 46-132 (136)
133 PHA02562 46 endonuclease subun 30.2 2.7E+02 0.0057 29.8 9.1 72 285-356 289-370 (562)
134 PRK14284 chaperone protein Dna 29.7 1.2E+02 0.0025 31.6 6.0 47 160-214 135-188 (391)
135 PRK14298 chaperone protein Dna 29.2 2.1E+02 0.0046 29.5 7.8 49 160-216 118-173 (377)
136 PF07544 Med9: RNA polymerase 28.8 53 0.0012 26.5 2.7 35 282-316 44-80 (83)
137 PRK14151 heat shock protein Gr 28.7 2.6E+02 0.0056 25.9 7.5 46 294-339 19-64 (176)
138 PRK14147 heat shock protein Gr 28.3 2.6E+02 0.0057 25.8 7.5 43 297-339 20-62 (172)
139 KOG0774 Transcription factor P 28.0 1.3E+02 0.0029 29.8 5.6 39 304-345 102-140 (334)
140 PF01025 GrpE: GrpE; InterPro 27.9 55 0.0012 29.3 2.9 64 294-357 10-82 (165)
141 PF08432 Vfa1: AAA-ATPase Vps4 27.6 1.6E+02 0.0035 27.2 6.0 67 258-325 18-85 (182)
142 PRK14285 chaperone protein Dna 27.4 1.2E+02 0.0026 31.1 5.6 49 159-215 122-177 (365)
143 PRK14160 heat shock protein Gr 27.4 2.5E+02 0.0053 26.9 7.3 45 295-339 61-105 (211)
144 PF04111 APG6: Autophagy prote 27.3 4E+02 0.0086 26.9 9.2 56 294-349 49-104 (314)
145 PRK14155 heat shock protein Gr 27.0 2.3E+02 0.0051 27.0 7.1 44 296-339 14-57 (208)
146 PF05852 DUF848: Gammaherpesvi 26.5 2.5E+02 0.0054 25.4 6.7 42 294-335 60-101 (146)
147 PRK14153 heat shock protein Gr 26.5 2.3E+02 0.005 26.8 6.8 45 296-340 34-78 (194)
148 PRK14159 heat shock protein Gr 26.2 2.5E+02 0.0054 26.1 6.9 47 294-340 21-68 (176)
149 PRK14141 heat shock protein Gr 25.9 2.7E+02 0.0059 26.6 7.3 40 300-339 36-75 (209)
150 KOG1850 Myosin-like coiled-coi 25.9 3.3E+02 0.0071 27.9 8.0 59 296-355 117-175 (391)
151 PF07926 TPR_MLP1_2: TPR/MLP1/ 25.4 3.5E+02 0.0077 23.4 7.5 48 294-341 16-63 (132)
152 PF07106 TBPIP: Tat binding pr 25.1 4.9E+02 0.011 23.4 8.6 37 294-330 71-107 (169)
153 PRK14157 heat shock protein Gr 24.7 2.3E+02 0.005 27.5 6.6 40 300-339 82-121 (227)
154 PF13851 GAS: Growth-arrest sp 24.7 5.7E+02 0.012 24.0 9.2 19 336-354 113-131 (201)
155 cd07681 F-BAR_PACSIN3 The F-BA 24.7 3.8E+02 0.0083 26.4 8.3 51 294-344 167-217 (258)
156 PF10368 YkyA: Putative cell-w 24.6 2.3E+02 0.0051 26.7 6.6 52 304-355 84-136 (204)
157 CHL00063 atpE ATP synthase CF1 24.6 4.8E+02 0.01 22.8 10.7 84 249-333 41-127 (134)
158 PF09903 DUF2130: Uncharacteri 24.5 4.2E+02 0.0091 26.2 8.6 64 293-356 171-238 (267)
159 PRK14146 heat shock protein Gr 24.0 3.5E+02 0.0077 25.9 7.7 45 295-339 54-98 (215)
160 PF10146 zf-C4H2: Zinc finger- 24.0 5.6E+02 0.012 24.8 9.1 15 331-345 89-103 (230)
161 COG3352 FlaC Putative archaeal 23.8 3.6E+02 0.0078 24.6 7.1 33 300-332 70-102 (157)
162 TIGR02616 tnaC_leader tryptoph 23.7 43 0.00094 21.4 0.9 12 394-405 7-18 (26)
163 COG1579 Zn-ribbon protein, pos 23.6 3.7E+02 0.0081 26.2 7.9 53 294-349 116-168 (239)
164 PF06103 DUF948: Bacterial pro 23.5 3.8E+02 0.0083 21.3 7.7 56 294-349 25-80 (90)
165 cd00890 Prefoldin Prefoldin is 23.5 4.4E+02 0.0095 22.0 8.2 63 271-333 56-125 (129)
166 smart00721 BAR BAR domain. 23.2 1.8E+02 0.004 26.9 5.7 37 310-349 171-207 (239)
167 PRK14278 chaperone protein Dna 22.9 1.7E+02 0.0037 30.2 5.8 50 159-216 115-171 (378)
168 PF12434 Malate_DH: Malate deh 22.8 83 0.0018 20.4 2.1 17 33-49 10-26 (28)
169 PF05377 FlaC_arch: Flagella a 22.7 2.6E+02 0.0055 21.2 5.1 30 300-329 19-48 (55)
170 PRK11637 AmiB activator; Provi 22.5 4.4E+02 0.0096 27.4 8.8 24 294-317 46-69 (428)
171 PRK09039 hypothetical protein; 22.2 5E+02 0.011 26.5 8.9 59 295-353 144-203 (343)
172 PRK14279 chaperone protein Dna 22.0 1.6E+02 0.0034 30.7 5.3 48 160-215 150-204 (392)
173 cd07672 F-BAR_PSTPIP2 The F-BA 22.0 4.9E+02 0.011 25.2 8.4 49 295-343 154-202 (240)
174 PF08654 DASH_Dad2: DASH compl 22.0 2.9E+02 0.0064 23.3 6.0 57 300-356 2-64 (103)
175 cd07671 F-BAR_PSTPIP1 The F-BA 21.8 5.6E+02 0.012 24.8 8.8 51 295-345 153-203 (242)
176 PRK14156 heat shock protein Gr 21.7 3.4E+02 0.0074 25.2 6.9 40 300-339 32-71 (177)
177 KOG2002 TPR-containing nuclear 21.4 9E+02 0.019 28.5 11.2 23 327-349 855-877 (1018)
178 PF11594 Med28: Mediator compl 21.3 5.2E+02 0.011 22.2 7.3 57 294-350 14-79 (106)
179 PRK14161 heat shock protein Gr 20.6 4.7E+02 0.01 24.3 7.6 41 299-339 23-63 (178)
180 PRK00539 atpC F0F1 ATP synthas 20.6 5.8E+02 0.013 22.3 10.3 86 249-335 42-131 (133)
181 PRK14296 chaperone protein Dna 20.3 3.6E+02 0.0079 27.7 7.5 49 160-216 126-181 (372)
182 PRK03947 prefoldin subunit alp 20.2 5E+02 0.011 22.5 7.5 64 259-331 71-137 (140)
183 PRK14280 chaperone protein Dna 20.1 3.8E+02 0.0082 27.6 7.6 48 160-215 120-174 (376)
184 PF14523 Syntaxin_2: Syntaxin- 20.1 3.3E+02 0.0071 22.0 5.9 34 305-338 67-100 (102)
No 1
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-53 Score=412.47 Aligned_cols=315 Identities=35% Similarity=0.447 Sum_probs=275.7
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccch
Q 015255 15 KQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ 94 (410)
Q Consensus 15 ~~~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~ 94 (410)
....+|||+||||+++||+.|||+|||||||+|||||||+||.|.+.|++|+.||+|||||++|+.||.+|++++...+.
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~ 91 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENK 91 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred hhhhccccchhHHHHHHHHhccCCcceeeeechhHHHHHhCCceeeeecccccccccccccccccccceeEeeeeccCCc
Q 015255 95 ELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEEARAGF 174 (410)
Q Consensus 95 ~~~~d~s~~g~~~~iF~~fFg~~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~a~~ygv~i~~eqi~~G~ 174 (410)
....+.++ +++|..||+.+|+ ++....++++ ++.|..+...++++|+|+|.+.++.+....|+
T Consensus 92 ~~~~g~~~----~~~f~~~f~dfg~----~~~g~~~~e~---------~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v 154 (336)
T KOG0713|consen 92 DGEGGGGG----NDIFSAFFGDFGV----TVGGNPLEEA---------LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGV 154 (336)
T ss_pred ccccCCcc----cchHHHhhccccc----ccCCCcccCC---------CCCCceEEeehhhchhhhhcccHHHHHhccCc
Confidence 22222111 6899999999987 3333333333 55667777788899999999999999999999
Q ss_pred EEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcccccccccCCCCccccCCCCCCCc
Q 015255 175 VCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKLDGFQP 254 (410)
Q Consensus 175 v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g~~~~~~~kd~~~~~F~~l~g~~~ 254 (410)
+.++..+...+|++++|++.+.+|.....|+..|.+++.. +++- ..+..+.+|+++.++++
T Consensus 155 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~~------------k~~~-------e~~~~~~~~~~~~~~~~ 215 (336)
T KOG0713|consen 155 YKPAPGTRKCNCRLEMFTQQEGPGRFQMLQEAVCDECPNV------------KLVL-------EEDPLEVEFERGDADGP 215 (336)
T ss_pred eeecCcccccCChhhheeeccCCChhhhhhhhhhccCCcc------------ceee-------cCCceeeeeeecccCCc
Confidence 9999999999999999999988888888888888766551 1121 45667889999999999
Q ss_pred cceEEEeccceeEEEeCCceeEeeeeeEEEeecCCchhhhhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 015255 255 CEITELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQ 334 (410)
Q Consensus 255 ~d~~~l~~~~H~F~r~Gdnl~~~~~is~eaL~g~~~~~~~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~ 334 (410)
..+.+++.++|+||+||||||..+.|+.+.++..+.....+.++++|++|+.++.||..|+.||++|++++.++..++..
T Consensus 216 ~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~ 295 (336)
T KOG0713|consen 216 EEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTR 295 (336)
T ss_pred eeeeeccCCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCcc
Q 015255 335 EMQAIDELLKQRNEIHASYTTAPPMKRSTSK 365 (410)
Q Consensus 335 ~~~~~~~ll~~r~~~~~~~~~~~~~~~~~~~ 365 (410)
+.+++.++|+.|+.++..|++.++..-.++.
T Consensus 296 ~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~ 326 (336)
T KOG0713|consen 296 KKGEGMPLLKNRNEKGNLYVTFDVEFPKSSL 326 (336)
T ss_pred hhhccchhhhccchhcceeEEecccCccccc
Confidence 9999999999999999999999887754333
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-47 Score=382.63 Aligned_cols=254 Identities=26% Similarity=0.426 Sum_probs=211.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhh
Q 015255 17 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQEL 96 (410)
Q Consensus 17 ~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~ 96 (410)
..+|||+||||+++||++|||+|||+||++||||+|+++++|.++|++|++||+|||||+||++||++|..++..++.+.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg 81 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGG 81 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999998876333222
Q ss_pred hhccccch-hHHHHHHHHhcc------------CCcceeeeechhHHHHHhCCceeeeecccccccccccccc-------
Q 015255 97 ELDLSSLG-AVNTMFAALFSK------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQ------- 156 (410)
Q Consensus 97 ~~d~s~~g-~~~~iF~~fFg~------------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq------- 156 (410)
. .+++++ ++++||++|||+ .|.++.+.+.++ |+||+.|..+.+.++. ...|..|.++
T Consensus 82 ~-g~~~fgg~~~DIF~~~FgGg~~~~~~~~~~~rG~Dl~~~l~is-leEa~~G~~~~i~~~~-~~~C~~C~GsGak~gt~ 158 (371)
T COG0484 82 F-GFGGFGGDFGDIFEDFFGGGGGGRRRPNRPRRGADLRYNLEIT-LEEAVFGVKKEIRVTR-SVTCSTCHGSGAKPGTD 158 (371)
T ss_pred C-CcCCCCCCHHHHHHHhhcCCCcccCCCCCcccCCceEEEEEeE-hhhhccCceeeEecce-eeECCcCCCCCCCCCCC
Confidence 1 444455 589999999942 356778888888 9999999998777655 6779999987
Q ss_pred ---ccccc--ceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcc
Q 015255 157 ---CAHFY--SVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQT 231 (410)
Q Consensus 157 ---~a~~y--gv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g 231 (410)
|..|. |.....+.. .+++++++|.. |. |.|.++...|..|.+.|.+.....+.+.+|. |++.|
T Consensus 159 ~~tC~tC~G~G~v~~~~~~---g~~~~~~~C~~-C~-------G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPa-Gv~~g 226 (371)
T COG0484 159 PKTCPTCNGSGQVRTVQRT---GFFSFQQTCPT-CN-------GTGKIIKDPCGKCKGKGRVKKKKSISVNIPA-GVDDG 226 (371)
T ss_pred CCcCCCCCCcCeEEEEEee---eEEEEEEECCC-Cc-------cceeECCCCCCCCCCCCeEeeeeEEEEECCC-CCccC
Confidence 33333 333333333 55666789977 99 9998777789999999999999888899998 99999
Q ss_pred cccccccCCCCccccCCCCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCc
Q 015255 232 ATSMAAAKDPDAAFFKKLDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPF 290 (410)
Q Consensus 232 ~~~~~~~kd~~~~~F~~l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~ 290 (410)
+.|+++..++.. +.|..+||+ |.|.+..| +|.|.||||+.+++|+ ++|+.|-..
T Consensus 227 -~~ir~~g~G~~g----~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i 283 (371)
T COG0484 227 -DRIRLSGEGEAG----PNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEI 283 (371)
T ss_pred -CEEEEecCcccC----CCCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEE
Confidence 888888888887 567778899 99999999 9999999999999999 999888443
No 3
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-43 Score=344.58 Aligned_cols=243 Identities=30% Similarity=0.432 Sum_probs=201.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhh
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~ 97 (410)
...||+||||+++||++|||+|||+||++|||||||+ |.++|++|++||+|||||++|.+||++|++++..++.+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~- 78 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGG- 78 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCC-
Confidence 4689999999999999999999999999999999985 899999999999999999999999999999886554332
Q ss_pred hccccchhHHHHHHHHhcc---------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc-----------
Q 015255 98 LDLSSLGAVNTMFAALFSK---------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC----------- 157 (410)
Q Consensus 98 ~d~s~~g~~~~iF~~fFg~---------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~----------- 157 (410)
+++. |++||+. .|.++.+.+.++ |+++|.|......++. +.+|.+|.+.+
T Consensus 79 ----g~~~----f~~~F~~g~~~~~~~~rg~~~~~~~~~~-Le~~y~G~s~kl~l~~-~~iCs~C~GsGgksg~~~~C~~ 148 (337)
T KOG0712|consen 79 ----GFGG----FSQFFGFGGNGGRGRQRGKDVVHQLKVT-LEELYMGKSKKLFLSR-NFICSKCSGSGGKSGSAPKCTT 148 (337)
T ss_pred ----CCcc----HHHhccCCCcCccccccCCCceEEEEEE-HHHhhcCCccceeccc-CccCCcCCCCCCCCCCCCCCCC
Confidence 1122 5555542 267888888888 9999999877776644 78899998763
Q ss_pred ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeecccccc--CCceeeeceEEEeeeeeecCcccccc
Q 015255 158 AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTK--TGKVTSAGMYFLGFPVYRLDQTATSM 235 (410)
Q Consensus 158 a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k--~gkvt~~~~~~L~~pv~~~~~g~~~~ 235 (410)
|.+.|+.+...++.+||++++|++|.+ |. |.|.. +..+|.|+ .|.........|+++| ++|
T Consensus 149 C~GsGv~~~~~~~gPg~~qs~q~~C~~-C~-------G~G~~--~~~kd~C~~C~G~~~v~~kkil~v~V---~~g---- 211 (337)
T KOG0712|consen 149 CRGSGVQTRTRQMGPGMVQSPQLVCDS-CN-------GSGET--ISLKDRCKTCSGAKVVREKKILEVHV---EPG---- 211 (337)
T ss_pred CCCCCceeEEEeccccccccceeEecc-CC-------Ccccc--ccccccCcccccchhhhhhheeeccc---cCC----
Confidence 466679999999999999999999988 99 88853 34445555 3433444456899988 999
Q ss_pred cccCCCCccccC----CCCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 236 AAAKDPDAAFFK----KLDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 236 ~~~kd~~~~~F~----~l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
|.+++.+.|. ..++..|||+ ++|++.+| .|.|.|+||++..+|+ .|||||+++..+
T Consensus 212 --~~~~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~ 274 (337)
T KOG0712|consen 212 --MPHGQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWE 274 (337)
T ss_pred --CcccceeeeeeeeeecCCCcCccEEEEecccccccceecccccceeeecchhhccccceEEEE
Confidence 9999999665 5688889999 99999999 9999999999999999 999999877554
No 4
>PRK14296 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.7e-41 Score=344.69 Aligned_cols=253 Identities=23% Similarity=0.381 Sum_probs=196.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccc---h
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESES---Q 94 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~---~ 94 (410)
.+|||+||||+++||++|||+|||+||++||||+|+ ++.|.++|++|++||+|||||++|+.||.+|.+++...+ .
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~-~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~ 81 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK-SPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSS 81 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CchHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCc
Confidence 479999999999999999999999999999999998 578999999999999999999999999999987654211 0
Q ss_pred hh-hh-c-cc-----cchhHHHHHHHHhcc---------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc
Q 015255 95 EL-EL-D-LS-----SLGAVNTMFAALFSK---------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC 157 (410)
Q Consensus 95 ~~-~~-d-~s-----~~g~~~~iF~~fFg~---------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~ 157 (410)
++ .+ + ++ +++++.++|..||++ .|.++...+.++ |+++|+|..+...+.. ...|..|.+.+
T Consensus 82 ~~~~~~~~~~~~~~~g~~~f~d~f~~~fggg~~~~~~~~~g~di~~~l~lt-lee~~~G~~~~i~~~~-~~~C~~C~G~G 159 (372)
T PRK14296 82 NFGDFEDLFSNMGSSGFSSFTNIFSDFFGSNKSDYQRSTKGQSVSLDIYLT-FKELLFGVDKIIELDL-LTNCSKCFGSG 159 (372)
T ss_pred CCCccccccccccccccccchhhhhhhcCCCccCCCCcCCCCCeEEEeecc-HHHhhCCeeEEEEEee-eeccCCCCCCc
Confidence 00 00 0 01 123456889999973 245677788888 9999999987766644 56688888753
Q ss_pred ------------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeee
Q 015255 158 ------------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPV 225 (410)
Q Consensus 158 ------------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv 225 (410)
|++.|+.+..+++++ ++++++++|.. |. |.|.+....|..|.+.|.+.... .+.|.|
T Consensus 160 ~~~~~~~~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~~~V~I 228 (372)
T PRK14296 160 AESNSDIHICNNCHGTGEVLVQKNMGF-FQFQQSAKCNV-CN-------GAGKIIKNKCKNCKGKGKYLERK--KIEVNI 228 (372)
T ss_pred cCCCCCCccCCCCCCCceEEEEEeccc-eEEEEEecCCC-cC-------CcceeecccccCCCCceEEEEEE--EEEEEE
Confidence 244455556666666 56688889977 99 99987777888888777655544 566655
Q ss_pred eecCcccccccccCCCCccccC-----CCCCCCccce-EEEeccce-eEEEe-CCceeEeeeee-EEEeecCCchhh
Q 015255 226 YRLDQTATSMAAAKDPDAAFFK-----KLDGFQPCEI-TELKAGTH-VFAVY-GDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 226 ~~~~~g~~~~~~~kd~~~~~F~-----~l~g~~~~d~-~~l~~~~H-~F~r~-Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
.+| +.+++.+.|. .+++..+||+ ++|+...| +|.|. |+||+++++|+ .|||+|+.+...
T Consensus 229 ---p~G------~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~ 296 (372)
T PRK14296 229 ---PKG------IRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIK 296 (372)
T ss_pred ---CCC------CCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEee
Confidence 667 6666766555 2456779999 99999999 99996 89999999999 999999987654
No 5
>PRK14288 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.5e-41 Score=344.71 Aligned_cols=251 Identities=21% Similarity=0.321 Sum_probs=191.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhh
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~ 97 (410)
..|||+||||+++||++|||+|||+||++||||+|+++++|.++|++|++||+||+||++|+.||.+|..++...+.. .
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~-~ 80 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGAS-Q 80 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCC-c
Confidence 379999999999999999999999999999999999888899999999999999999999999999998766432110 0
Q ss_pred hcccc-chhHHHHHHHHhcc-----------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc--------
Q 015255 98 LDLSS-LGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC-------- 157 (410)
Q Consensus 98 ~d~s~-~g~~~~iF~~fFg~-----------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~-------- 157 (410)
.++++ ++.++++|+.||++ .|.++...+.++ |+++|+|..+...+.. ...|..|.+.+
T Consensus 81 ~~~~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vs-lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~~~~~ 158 (369)
T PRK14288 81 SDFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELS-FKEAVFGCKKTIKVQY-QSVCESCDGTGAKDKALET 158 (369)
T ss_pred cccccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEecccc-HHHHhCCeEEEEEEEe-eccCCCCCCcccCCCCCcC
Confidence 11222 23456678887762 134666777887 9999999987766644 55688887753
Q ss_pred -ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCccccccc
Q 015255 158 -AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMA 236 (410)
Q Consensus 158 -a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g~~~~~ 236 (410)
..|.|..+.... .|++ +++++|.. |. |.|.++...|..|.+.|.+.... .|.|+| .+|
T Consensus 159 C~~C~G~G~~~~~--~g~~-~~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~l~V~I---P~G----- 217 (369)
T PRK14288 159 CKQCNGQGQVFMR--QGFM-SFAQTCGA-CQ-------GKGKIIKTPCQACKGKTYILKDE--EIDAII---PEG----- 217 (369)
T ss_pred CCCCCCCcEEEEE--eceE-EEEEecCC-CC-------CCceEccccCccCCCcceEEEEE--EEEEec---CCC-----
Confidence 233332111111 2666 45668866 99 99977777788787777776655 566655 667
Q ss_pred ccCCCCccccCC----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 237 AAKDPDAAFFKK----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 237 ~~kd~~~~~F~~----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+.+++.+.|.. .++..|||| ++|....| +|.|.|+||+++++|+ .|||+|+.....
T Consensus 218 -~~~G~~i~l~g~G~~~~~~~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~ 280 (369)
T PRK14288 218 -IDDQNRMVLKNKGNEYEKGKRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVP 280 (369)
T ss_pred -CCCCCEEEEccCccCCCCCCCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEee
Confidence 77777775652 345679999 99999999 9999999999999999 999999887654
No 6
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=100.00 E-value=4.6e-41 Score=345.56 Aligned_cols=248 Identities=27% Similarity=0.416 Sum_probs=197.5
Q ss_pred ccCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccc
Q 015255 12 DAGKQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVES 91 (410)
Q Consensus 12 ~~~~~~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~ 91 (410)
.+.....+|||+||||+++||.+|||+|||+||++||||+|++ .++|++|++||+||+||++|++||.+|..++..
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~ 96 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEG 96 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcchhccc
Confidence 3444456899999999999999999999999999999999862 489999999999999999999999999876542
Q ss_pred cchhhhhccccchhHHHHHHHHhcc--------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc------
Q 015255 92 ESQELELDLSSLGAVNTMFAALFSK--------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC------ 157 (410)
Q Consensus 92 ~~~~~~~d~s~~g~~~~iF~~fFg~--------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~------ 157 (410)
... .+++.++|..||++ .|.++...+.++ |+++|+|..+...+.. ...|..|.|.+
T Consensus 97 ~~~--------~~d~~d~f~~~Fggg~~~~~~~rg~di~~~l~vt-Lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~~~ 166 (421)
T PTZ00037 97 GEQ--------PADASDLFDLIFGGGRKPGGKKRGEDIVSHLKVT-LEQIYNGAMRKLAINK-DVICANCEGHGGPKDAF 166 (421)
T ss_pred CCC--------CcchhhhHHHhhccccccccccCCCCEEEEeeee-HHHHhCCCceEEEeec-cccccccCCCCCCCCCC
Confidence 211 12356789999974 245777778887 9999999987776644 66788888764
Q ss_pred -----ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCccee--eeccccccCCceeeeceEEEeeeeeecCc
Q 015255 158 -----AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSL--ALQEDCTKTGKVTSAGMYFLGFPVYRLDQ 230 (410)
Q Consensus 158 -----a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~--~~~eD~~k~gkvt~~~~~~L~~pv~~~~~ 230 (410)
|++.|+.+...++++ |+++++++|.. |. |.|.++. ..|..|.+.|.+.... .|.|.| .+
T Consensus 167 ~~C~~C~G~G~~~~~~~~g~-~~~q~~~~C~~-C~-------G~G~~i~~~~~C~~C~G~g~v~~~~--~l~V~I---p~ 232 (421)
T PTZ00037 167 VDCKLCNGQGIRVQIRQMGS-MIHQTQSTCNS-CN-------GQGKIIPESKKCKNCSGKGVKKTRK--ILEVNI---DK 232 (421)
T ss_pred ccCCCCCCCCeEEEEEeecc-eeeEEEEeCCC-CC-------CcceeccccccCCcCCCcceeeeee--EEEEee---CC
Confidence 244456666666665 88889999977 99 8885433 4577777777665544 677777 77
Q ss_pred ccccccccCCCCccccCC----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 231 TATSMAAAKDPDAAFFKK----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 231 g~~~~~~~kd~~~~~F~~----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
| +.+|+.+.|.. .++..|||| ++|.+..| +|.|.|+||++++.|+ .+||+|+.+...
T Consensus 233 G------~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~ 296 (421)
T PTZ00037 233 G------VPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYIT 296 (421)
T ss_pred C------CCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEee
Confidence 8 88888887762 346789999 99999999 9999999999999999 999999987664
No 7
>PRK14298 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.7e-40 Score=336.40 Aligned_cols=253 Identities=26% Similarity=0.344 Sum_probs=198.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccc-hhh
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESES-QEL 96 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~-~~~ 96 (410)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||.+|.+++.... ...
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNK-EPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAED 82 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccC-ChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCccc
Confidence 469999999999999999999999999999999997 577899999999999999999999999999987664321 000
Q ss_pred hhccccchhHHHHHHHHhcc----------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc---------
Q 015255 97 ELDLSSLGAVNTMFAALFSK----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC--------- 157 (410)
Q Consensus 97 ~~d~s~~g~~~~iF~~fFg~----------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~--------- 157 (410)
.+...+++++.++|+.|||+ .|.++...+.++ |+++|+|..+...+.. ...|..|.+.+
T Consensus 83 ~~~~~~~~~~~d~f~~~Fgg~~~~~~~~~~~g~di~~~l~vs-lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~~~~~~ 160 (377)
T PRK14298 83 IFRGADFGGFGDIFEMFFGGGGRRGRMGPRRGSDLRYDLYIT-LEEAAFGVRKDIDVPR-AERCSTCSGTGAKPGTSPKR 160 (377)
T ss_pred ccccCCcCcchhhhHhhhcCCCccCCCCCCCCCCEEEEEEEE-HHHhhCCeEEEEEEEe-eccCCCCCCCcccCCCCCCc
Confidence 00111234467899999974 234677778887 9999999987776644 56688887753
Q ss_pred ---ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCccccc
Q 015255 158 ---AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATS 234 (410)
Q Consensus 158 ---a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g~~~ 234 (410)
|++.|+.+..++ .++++++++++|.. |. |.|..+...|..|.+.|.+.... .|.|.| .+|
T Consensus 161 C~~C~G~G~~~~~~~-~~~g~~~~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~l~V~I---ppG--- 223 (377)
T PRK14298 161 CPTCGGTGQVTTTRS-TPLGQFVTTTTCST-CH-------GRGQVIESPCPVCSGTGKVRKTR--KITVNV---PAG--- 223 (377)
T ss_pred CCCCCCccEEEEEEe-cCceeEEEEEeCCC-CC-------CCCcccCCCCCCCCCccEEEEEE--EEEecC---CCC---
Confidence 233445444455 45566688999977 99 99977777888888877776554 666666 677
Q ss_pred ccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 235 MAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 235 ~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+.+++.+.|.. .++..+||+ ++|.+..| +|.|.|+||+++++|+ .|||+|+.....
T Consensus 224 ---~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 287 (377)
T PRK14298 224 ---ADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVP 287 (377)
T ss_pred ---CCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEe
Confidence 77778776663 356788999 99999999 9999999999999999 999999987653
No 8
>PRK14276 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.4e-40 Score=333.62 Aligned_cols=253 Identities=24% Similarity=0.350 Sum_probs=197.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccc-h--
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESES-Q-- 94 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~-~-- 94 (410)
.+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||++|+.||++|.+++..+. .
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~ 81 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINK-EPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGA 81 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCC
Confidence 369999999999999999999999999999999998 578899999999999999999999999999987764320 0
Q ss_pred -h-hhhcc-ccchhHHHHHHHHhcc-----------CCcceeeeechhHHHHHhCCceeeeecccccccccccccccc--
Q 015255 95 -E-LELDL-SSLGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCA-- 158 (410)
Q Consensus 95 -~-~~~d~-s~~g~~~~iF~~fFg~-----------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~a-- 158 (410)
. ..++. .++++++++|+.||++ .|.++...+.++ |+++|+|..+...+.. ...|..|.|.++
T Consensus 82 ~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vt-Lee~~~G~~~~i~~~~-~~~C~~C~G~G~~~ 159 (380)
T PRK14276 82 GGFGGFDGSGGFGGFEDIFSSFFGGGGARRNPNAPRQGDDLQYRVNLD-FEEAIFGKEKEVSYNR-EATCHTCNGSGAKP 159 (380)
T ss_pred CCCCCccccccccchhhHHHHHhCccccccCcCCCCCCCCEEEEEEEE-HHHhcCCeEEEEEeec-cccCCCCcCcccCC
Confidence 0 00111 1234567899999973 134667778887 9999999987766644 566888887642
Q ss_pred ----------cccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeec
Q 015255 159 ----------HFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 228 (410)
Q Consensus 159 ----------~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~ 228 (410)
++.|.....+++.+|++++ +++|.. |. |.|.++...|..|.+.|.+.... .|.|.|
T Consensus 160 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~-C~-------G~G~~~~~~C~~C~G~g~~~~~~--~l~V~I--- 225 (380)
T PRK14276 160 GTSPVTCGKCHGSGVITVDTQTPLGMMRR-QVTCDV-CH-------GTGKEIKEPCQTCHGTGHEKQAH--TVSVKI--- 225 (380)
T ss_pred CCCCccCCCCCCeeEEEEEEecCCceEEE-EEECCC-CC-------CCCccccCCCCCCCCceEEEEEE--EEEEEe---
Confidence 3345556666778899886 779966 99 99988888888888888766554 555555
Q ss_pred CcccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 229 DQTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 229 ~~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
.+| +.+++.+.|.. ..+..+||+ |+|+...| +|.|.|+||++.++|+ .|||+|+.+...
T Consensus 226 p~G------~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~ 292 (380)
T PRK14276 226 PAG------VETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVP 292 (380)
T ss_pred CCC------ccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEE
Confidence 566 66666665542 233467999 99999999 9999999999999999 999999987654
No 9
>PRK14287 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.9e-40 Score=332.01 Aligned_cols=251 Identities=26% Similarity=0.361 Sum_probs=197.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhh
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~ 97 (410)
..|||+||||+++||.+|||+|||+||++||||+|+ +++|.++|++|++||+||+||++|+.||.+|.+++.......
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~- 80 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNK-APDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGG- 80 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCC-
Confidence 469999999999999999999999999999999997 578899999999999999999999999999987654211000
Q ss_pred hccccchhHHHHHHHHhcc-----------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc---------
Q 015255 98 LDLSSLGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC--------- 157 (410)
Q Consensus 98 ~d~s~~g~~~~iF~~fFg~-----------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~--------- 157 (410)
...++++++++|+.||++ .|.++...+.++ |+++|+|..+...+.. ...|..|.|.+
T Consensus 81 -~~~~f~~~~d~f~~~fgg~~~~~~~~~~~~g~d~~~~l~vs-lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~~~~~~ 157 (371)
T PRK14287 81 -GAGDFGGFSDIFDMFFGGGGGRRNPNAPRQGADLQYTMTLE-FKEAVFGKETEIEIPR-EETCGTCHGSGAKPGTKPET 157 (371)
T ss_pred -CCccccchHHHHHhhhccccCCCCCCCCCCCCCEEEEEEEE-HHHhcCCeEEEEEEee-eccCCCCCCcccCCCCCCcc
Confidence 111233467899999973 234677778887 9999999987776644 56688887653
Q ss_pred ---ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCccccc
Q 015255 158 ---AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATS 234 (410)
Q Consensus 158 ---a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g~~~ 234 (410)
|++.|.....+++.+|++++ +++|.. |. |.|.++...|..|.+.|.+... ..|.|.| .+|
T Consensus 158 C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~--~~l~V~I---p~G--- 220 (371)
T PRK14287 158 CSHCGGSGQLNVEQNTPFGRVVN-RRVCHH-CE-------GTGKIIKQKCATCGGKGKVRKR--KKINVKV---PAG--- 220 (371)
T ss_pred cCCCCCEEEEEEEEecCCceEEE-EEeCCC-CC-------CCCccccccCCCCCCeeEEeee--EEEEEEE---CCc---
Confidence 24445566667788898876 678965 99 9998777778877776666543 4666666 677
Q ss_pred ccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 235 MAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 235 ~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+.+++.+.|.. .++..+||+ ++|+...| +|.|.|+||+++++|+ .+||+|+.....
T Consensus 221 ---~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 284 (371)
T PRK14287 221 ---IDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVP 284 (371)
T ss_pred ---CCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEE
Confidence 77777776652 234578999 99999999 9999999999999999 999999987654
No 10
>PRK14278 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-39 Score=331.79 Aligned_cols=251 Identities=26% Similarity=0.359 Sum_probs=195.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhhh
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELEL 98 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~~ 98 (410)
+|||+||||+++||.+|||+|||+||++||||+|+ +++|.++|++|++||+||+||.+|+.||.+|.+.....+....+
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~-~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g~ 81 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNP-DEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGGF 81 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCC-cHHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCCC
Confidence 69999999999999999999999999999999998 67899999999999999999999999999997533211100000
Q ss_pred ccccchhHHHHHHHHhccC------------CcceeeeechhHHHHHhCCceeeeeccccccccccccccc---------
Q 015255 99 DLSSLGAVNTMFAALFSKL------------GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC--------- 157 (410)
Q Consensus 99 d~s~~g~~~~iF~~fFg~~------------G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~--------- 157 (410)
+ .++++++++|..||++. |.++...+.++ |+++|+|..+...+.. ...|..|.|.+
T Consensus 82 ~-~~f~~~~d~f~~ffgg~g~~~~~~~~~~~g~d~~~~l~vt-Lee~~~G~~~~i~~~~-~~~C~~C~G~G~~~~~~~~~ 158 (378)
T PRK14278 82 G-GGFGGLGDVFEAFFGGGAASRGPRGRVRPGSDSLLRMRLD-LEECATGVTKQVTVDT-AVLCDRCHGKGTAGDSKPVT 158 (378)
T ss_pred C-cCcCchhHHHHHHhCCCCCCCCCccCCCCCCCeEEEEEEE-HHHhcCCeEEEEEEEe-eccCCCCcCccCCCCCCcee
Confidence 1 12344678999999742 23566677787 9999999987776644 56788888754
Q ss_pred ---ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCccccc
Q 015255 158 ---AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATS 234 (410)
Q Consensus 158 ---a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g~~~ 234 (410)
|++.|..+...+..+|++++ +++|.. |. |.|.++...|..|.+.|.+.... .|.|+| .+|
T Consensus 159 C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~~~V~I---p~G--- 221 (378)
T PRK14278 159 CDTCGGRGEVQTVQRSFLGQVMT-SRPCPT-CR-------GVGEVIPDPCHECAGDGRVRARR--EITVKI---PAG--- 221 (378)
T ss_pred cCCccCceEEEEEEeccceeEEE-EEECCC-CC-------ccceeeCCCCCCCCCceeEecce--EEEEEE---CCC---
Confidence 23345555555667787775 558866 99 99987777888888888776554 666666 777
Q ss_pred ccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 235 MAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 235 ~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+.+++.+.|.. ..+..+||+ ++|++..| +|.|.|+||++.++|+ .+||+|+.....
T Consensus 222 ---~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 285 (378)
T PRK14278 222 ---VGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVE 285 (378)
T ss_pred ---CCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEe
Confidence 77888776663 234567999 99999999 9999999999999999 999999987654
No 11
>PRK14285 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=9.9e-40 Score=331.02 Aligned_cols=251 Identities=25% Similarity=0.391 Sum_probs=195.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccch--hh
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ--EL 96 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~--~~ 96 (410)
+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||++|..||.+|..++..++. ++
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~~ 82 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGF 82 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCcccc
Confidence 6999999999999999999999999999999999988889999999999999999999999999999876643211 10
Q ss_pred hhcccc----chhHHHHHHHHhccC-----------CcceeeeechhHHHHHhCCceeeeeccccccccccccccc----
Q 015255 97 ELDLSS----LGAVNTMFAALFSKL-----------GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC---- 157 (410)
Q Consensus 97 ~~d~s~----~g~~~~iF~~fFg~~-----------G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~---- 157 (410)
...+.+ +++++++|+.||++. |.++...+.++ |+++|+|..+...+.. ...|..|.|.+
T Consensus 83 ~~g~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~g~di~~~l~vt-lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~ 160 (365)
T PRK14285 83 SGGFSGFSDIFEDFGDIFDSFFTGNRGQDKNRKHEKGQDLTYQIEIS-LEDAYLGYKNNINITR-NMLCESCLGKKSEKG 160 (365)
T ss_pred CCCccccccccccHHHHHHHhhcCCcCCCCCcCCCCCCCEEEEEEEE-HHHhhCCeEEEEEeee-cccCCCCCCcccCCC
Confidence 001111 234678999999731 34566778887 9999999988776644 56788888764
Q ss_pred ------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcc
Q 015255 158 ------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQT 231 (410)
Q Consensus 158 ------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g 231 (410)
..|.|-..... .+|++ +++++|.. |. |.|.+....|..|.+.|.+.... .+.|+| .+|
T Consensus 161 ~~~~~C~~C~G~G~~~~--~~G~~-~~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~~~V~I---p~G 224 (365)
T PRK14285 161 TSPSICNMCNGSGRVMQ--GGGFF-RVTTTCPK-CY-------GNGKIISNPCKSCKGKGSLKKKE--TIELKI---PAG 224 (365)
T ss_pred CCCccCCCccCceeEEe--cCcee-EEeeecCC-CC-------CcccccCCCCCCCCCCCEEeccE--EEEEEE---CCC
Confidence 23333222222 56887 77899976 99 99988888888888888776554 566666 667
Q ss_pred cccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 232 ATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 232 ~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+.+++.+.|.. .++..|||+ ++|....| .|.|.|+||++.++|+ .+||+|+.....
T Consensus 225 ------~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~ 288 (365)
T PRK14285 225 ------IDDNQQIKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQ 288 (365)
T ss_pred ------CCCCCEEEEeeccccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEE
Confidence 77777775552 334568999 99999999 9999999999999999 999999887653
No 12
>PRK14286 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-39 Score=331.09 Aligned_cols=252 Identities=24% Similarity=0.369 Sum_probs=192.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhh
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~ 97 (410)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||++|+.||.+|.+++.....+..
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 36999999999999999999999999999999999988889999999999999999999999999999877643211000
Q ss_pred ----hccc-cchhHHHHHHHHhccC---------------CcceeeeechhHHHHHhCCceeeeeccccccccccccccc
Q 015255 98 ----LDLS-SLGAVNTMFAALFSKL---------------GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC 157 (410)
Q Consensus 98 ----~d~s-~~g~~~~iF~~fFg~~---------------G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~ 157 (410)
.++. .+++++++|+.||++. |.++...+.++ |+++|+|..+...+.. ...|..|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vt-Lee~~~G~~k~i~~~r-~~~C~~C~G~G 160 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVS-LEDAALGREYKIEIPR-LESCVDCNGSG 160 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEE-HHHHhCCeeEEEEeec-cccCCCCcCCC
Confidence 0111 1245678999999731 34667777887 9999999988777644 56788888753
Q ss_pred ----------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeee
Q 015255 158 ----------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYR 227 (410)
Q Consensus 158 ----------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~ 227 (410)
..|.|..+.... .|+++ ++++|.. |. |.|.++...|..|.+.|.+.... .|.|.|
T Consensus 161 ~~~~~~~~~C~~C~G~G~v~~~--~G~~~-~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~~~~~~--~l~V~I-- 225 (372)
T PRK14286 161 ASKGSSPTTCPDCGGSGQIRRT--QGFFS-VATTCPT-CR-------GKGTVISNPCKTCGGQGLQEKRR--TINIKI-- 225 (372)
T ss_pred cCCCCCCccCCCCcCeEEEEEE--eceEE-EEEeCCC-CC-------ceeeEecccCCCCCCCcEEecce--EEEEEE--
Confidence 233332222222 27764 7778976 99 99977777788777777666554 555555
Q ss_pred cCcccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 228 LDQTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 228 ~~~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
.+| +.+++.+.|.. ..+..+||+ ++|....| +|.|.|+||++.+.|+ .+||+|+.....
T Consensus 226 -p~G------~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 292 (372)
T PRK14286 226 -PPG------VETGSRLKVSGEGEAGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVP 292 (372)
T ss_pred -CCC------CCCCCEEEECCccccCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEe
Confidence 556 66666665552 234567999 99999999 9999999999999999 999999987653
No 13
>PRK14282 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.3e-39 Score=330.58 Aligned_cols=254 Identities=22% Similarity=0.341 Sum_probs=197.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-chhhHhHHhHHhhhhccCCcccccccccccccccccc----
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAND-PVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE---- 92 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~---- 92 (410)
.+|||+||||+++||.+|||+|||+||++||||+|+++ ++|.++|++|++||+||+||++|+.||.+|..++...
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~ 82 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQET 82 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccC
Confidence 47999999999999999999999999999999999865 6789999999999999999999999999998665321
Q ss_pred -c-hhhhhc-cccchh-H-HHHHHHHhccC------------CcceeeeechhHHHHHhCCceeeeeccccccccccccc
Q 015255 93 -S-QELELD-LSSLGA-V-NTMFAALFSKL------------GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEK 155 (410)
Q Consensus 93 -~-~~~~~d-~s~~g~-~-~~iF~~fFg~~------------G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kceg 155 (410)
+ .++..+ +..++. + +++|+.||++. |.++...+.++ |+++|+|..+...+.. ...|..|.+
T Consensus 83 ~~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~s-lee~~~G~~~~i~~~r-~~~C~~C~G 160 (369)
T PRK14282 83 ESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVT-LSDLINGAEIPVEYDR-YETCPHCGG 160 (369)
T ss_pred CCCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEE-HHHhcCCeEEEEEeee-cccCCCCCc
Confidence 0 010000 111211 1 37889998741 34667778887 9999999987766644 566888877
Q ss_pred cc------------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEee
Q 015255 156 QC------------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGF 223 (410)
Q Consensus 156 q~------------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~ 223 (410)
.+ |++.|..+..+++.+|++++ +++|.. |. |.|.++...|..|.+.|.+.... .|.|
T Consensus 161 ~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~l~V 229 (369)
T PRK14282 161 TGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVS-ERTCER-CG-------GTGKIPGEYCHECGGSGRIRRRV--RTTV 229 (369)
T ss_pred cCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEE-EEECCC-CC-------CcceeCCCCCCCCCCceeEEEEE--EEEE
Confidence 53 23445667777888999776 668866 99 99977777788788777666554 6666
Q ss_pred eeeecCcccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 224 PVYRLDQTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 224 pv~~~~~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+| .+| +.+++.+.|.. +++..+||+ |+|++..| +|.|.|+||+++++|+ .|||+|+.....
T Consensus 230 ~I---p~G------~~~G~~i~~~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~ 298 (369)
T PRK14282 230 KI---PAG------VEDGTVLRITGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVP 298 (369)
T ss_pred Ee---CCC------CCCCCEEEEecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEe
Confidence 66 667 77777776662 455678999 99999999 9999999999999999 999999987654
No 14
>PRK14280 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.6e-39 Score=330.70 Aligned_cols=251 Identities=25% Similarity=0.356 Sum_probs=197.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccch--hh
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ--EL 96 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~--~~ 96 (410)
+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||.+|.+++..+.. ++
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~-~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINK-EEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 69999999999999999999999999999999998 5779999999999999999999999999999876643210 00
Q ss_pred h-hccc-cchhHHHHHHHHhcc-----------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc------
Q 015255 97 E-LDLS-SLGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC------ 157 (410)
Q Consensus 97 ~-~d~s-~~g~~~~iF~~fFg~-----------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~------ 157 (410)
. .++. ++ +++++|+.||++ .|.++...+.++ |+++|+|..+...+.. ...|..|.+.+
T Consensus 83 ~~~~~~~~~-~~~d~f~~~fgg~~~~~~~~~~~kg~di~~~l~vt-Lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~~~ 159 (376)
T PRK14280 83 GGGDFGGGF-GFEDIFSSFFGGGGRRRDPNAPRQGADLQYTMTLT-FEEAVFGKEKEIEIPK-EETCDTCHGSGAKPGTS 159 (376)
T ss_pred CCCCccccc-cchhhHHHHhCCccccCcccccccccCEEEEEEEE-HHHHhCCceeEEEEee-eccCCCCCCcccCCCCC
Confidence 0 0111 11 356899999973 234677778887 9999999987776644 56688887753
Q ss_pred ------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcc
Q 015255 158 ------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQT 231 (410)
Q Consensus 158 ------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g 231 (410)
|++.|......++.+|+++ .+++|.. |+ |.|..+...|..|.+.|.+.... .|.|.| .+|
T Consensus 160 ~~~C~~C~G~G~~~~~~~~~~g~~~-~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~i~V~I---p~G 225 (376)
T PRK14280 160 KETCSHCGGSGQVSVEQNTPFGRVV-NRQTCPH-CN-------GTGQEIKEKCPTCHGKGKVRKRK--KINVKI---PAG 225 (376)
T ss_pred CccCCCCCCEEEEEEEeecCCceEE-EEEEcCC-CC-------CCCceecCCCCCCCCceEEEEEE--EEEEEe---CCC
Confidence 2334455555667788887 4778976 99 99987788888888888776554 666666 667
Q ss_pred cccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 232 ATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 232 ~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+.+++.+.|.. .++..+||+ ++|+...| +|.|.|+||++++.|+ .|||+|+.....
T Consensus 226 ------~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 289 (376)
T PRK14280 226 ------VDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVP 289 (376)
T ss_pred ------CcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEe
Confidence 77777775652 344678999 99999999 9999999999999999 999999987654
No 15
>PRK14277 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.8e-39 Score=331.35 Aligned_cols=253 Identities=26% Similarity=0.400 Sum_probs=196.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchh--
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQE-- 95 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~-- 95 (410)
..|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||.+|.+++...+.+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG 83 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence 369999999999999999999999999999999999888899999999999999999999999999998766421100
Q ss_pred ----hh-----hccccchhHHHHHHHHhcc--------------CCcceeeeechhHHHHHhCCceeeeecccccccccc
Q 015255 96 ----LE-----LDLSSLGAVNTMFAALFSK--------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRK 152 (410)
Q Consensus 96 ----~~-----~d~s~~g~~~~iF~~fFg~--------------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~k 152 (410)
.. +++ .++.+.++|..||++ .|.++...+.++ |+++|+|..+...+.. ...|..
T Consensus 84 ~~~~~g~~~~~~~~-~~~~~~d~f~~~F~~~fgg~~~~~~~~~~kg~di~~~l~vt-Lee~~~G~~~~v~~~r-~~~C~~ 160 (386)
T PRK14277 84 GFGQGGFGGGGFDF-DFGGFGDIFEDIFGDFFGTGRRRAETGPQKGADIRYDLELT-FEEAAFGTEKEIEVER-FEKCDV 160 (386)
T ss_pred CcCCCCccccCccc-cccchhHHHHHhhcccccCCCcCCCCCCCCCCCEEEEEEEE-HHHHhCCeEEEEEEEe-eccCCC
Confidence 00 010 013345667666652 134677778887 9999999988776644 567888
Q ss_pred ccccc------------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEE
Q 015255 153 VEKQC------------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYF 220 (410)
Q Consensus 153 cegq~------------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~ 220 (410)
|.+.+ |++.|..+..+++.+|++++. ++|.. |. |.|..+...|..|.+.|.+.... .
T Consensus 161 C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~-~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~ 229 (386)
T PRK14277 161 CKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNI-RTCDR-CH-------GEGKIITDPCNKCGGTGRIRRRR--K 229 (386)
T ss_pred CCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEE-EECCC-CC-------cceeeccCCCCCCCCCcEEeeee--E
Confidence 87753 233456666778889998876 58866 99 99987888888888888776554 5
Q ss_pred EeeeeeecCcccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchh
Q 015255 221 LGFPVYRLDQTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTE 292 (410)
Q Consensus 221 L~~pv~~~~~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~ 292 (410)
|.|+| .+| +.+++.+.|.. ..+..+||+ |.|+...| +|.|.|+||+++++|+ .|||+|+....
T Consensus 230 l~V~I---p~G------~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i 300 (386)
T PRK14277 230 IKVNI---PAG------IDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEI 300 (386)
T ss_pred EEEec---CCC------ccCCcEEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEE
Confidence 55655 566 66666665552 335678999 99999999 9999999999999999 99999998765
Q ss_pred h
Q 015255 293 E 293 (410)
Q Consensus 293 ~ 293 (410)
.
T Consensus 301 ~ 301 (386)
T PRK14277 301 P 301 (386)
T ss_pred E
Confidence 3
No 16
>PRK14297 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.3e-39 Score=328.05 Aligned_cols=254 Identities=24% Similarity=0.386 Sum_probs=197.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccch---
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ--- 94 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~--- 94 (410)
..|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||.+|.+++...+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~ 82 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGS 82 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCC
Confidence 36999999999999999999999999999999999988889999999999999999999999999999877642110
Q ss_pred -hh-hhccccchhHHHHHHHHhcc-------------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc--
Q 015255 95 -EL-ELDLSSLGAVNTMFAALFSK-------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC-- 157 (410)
Q Consensus 95 -~~-~~d~s~~g~~~~iF~~fFg~-------------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~-- 157 (410)
++ .++++.+++++++|++||++ .|.++...+.++ |+++|+|..+...+.. ...|..|.+.+
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~~g~~~~~~~~~~kg~di~~~l~vs-Lee~~~G~~~~i~~~r-~~~C~~C~G~G~~ 160 (380)
T PRK14297 83 GGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQRGADIEYTINLT-FEEAVFGVEKEISVTR-NENCETCNGTGAK 160 (380)
T ss_pred CCCCCcCcccccchhHHHHHHhccCccccccccCCCCCCCCEEEEEEEE-HHHhcCCeEEEEEeee-eccCCCccccccc
Confidence 10 01111123467899999973 134677778887 9999999987776644 56688887753
Q ss_pred --------cc--ccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeee
Q 015255 158 --------AH--FYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYR 227 (410)
Q Consensus 158 --------a~--~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~ 227 (410)
.. +.|..+..+++.+|+++ .+++|.. |. |.|.++...|..|.+.|.+.... .+.|+|
T Consensus 161 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~-~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~i~V~I-- 227 (380)
T PRK14297 161 PGTSPKTCDKCGGTGQIRVQRNTPLGSFV-STTTCDK-CG-------GSGKVIEDPCNKCHGKGKVRKNR--KIKVNV-- 227 (380)
T ss_pred CCCcCccCCCccCeEEEEEEEEcCCceeE-EEEeCCC-CC-------CCceEcCCCCCCCCCCeEEEeEe--EEEEEe--
Confidence 22 33445555677788765 4778966 99 99977777888888877655544 566665
Q ss_pred cCcccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 228 LDQTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 228 ~~~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
.+| +.+++.+.|.. ..+..+||+ ++|....| .|.|.|+||++.+.|+ .|||+|+.....
T Consensus 228 -p~G------~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~ 294 (380)
T PRK14297 228 -PAG------VDTGNVIPLRGQGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVP 294 (380)
T ss_pred -CCC------CCCCcEEEEecCccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEE
Confidence 666 66677765552 234568999 99999999 9999999999999999 999999987654
No 17
>PRK14294 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.6e-39 Score=328.11 Aligned_cols=252 Identities=23% Similarity=0.415 Sum_probs=194.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhh
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~ 97 (410)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||.+|.+++...+.+..
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~ 82 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGF 82 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCc
Confidence 47999999999999999999999999999999999988889999999999999999999999999999877643211000
Q ss_pred hccc-cchhHHHHHHHHhc-c------------CCcceeeeechhHHHHHhCCceeeeecccccccccccccc-------
Q 015255 98 LDLS-SLGAVNTMFAALFS-K------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQ------- 156 (410)
Q Consensus 98 ~d~s-~~g~~~~iF~~fFg-~------------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq------- 156 (410)
.++. .++.++++|..||+ + .|.++...+.++ |+++|+|..+...+.. ...|..|.+.
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~g~~~~~~~~~~~~~g~d~~~~l~ls-lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~~~ 160 (366)
T PRK14294 83 SGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLP-FLEAAFGTEKEIRIQK-LETCEECHGSGCEPGTS 160 (366)
T ss_pred CccccchhhhhhhHHHhhccCCCcCCcccCCCCCCCCceEEEEee-HHHhcCCeEEEEEeee-cccCCCCCCccccCCCC
Confidence 0111 12345688999987 2 123566677887 9999999987776644 5668888774
Q ss_pred ---cccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcccc
Q 015255 157 ---CAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTAT 233 (410)
Q Consensus 157 ---~a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g~~ 233 (410)
|..|.|....... .|+++ ++++|.. |. |.|..+...|..|.+.|.+.... .|.|+| .+|
T Consensus 161 ~~~C~~C~G~G~~~~~--~G~~~-~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~l~V~I---p~G-- 222 (366)
T PRK14294 161 PTTCPQCGGSGQVTQS--QGFFS-IRTTCPR-CR-------GMGKVIVSPCKTCHGQGRVRVSK--TVQVKI---PAG-- 222 (366)
T ss_pred cccCCCcCCeEEEEEE--eeeEE-EEeeCCC-CC-------CcCeecCcCCCCCCCceEeecce--eEEEec---CCC--
Confidence 3344443333332 26764 7889966 99 99977777888777777665554 666666 677
Q ss_pred cccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 234 SMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 234 ~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+.+++.+.|.. .++..|||+ +.|....| +|.|.|+||++.+.|+ .+||+|+.....
T Consensus 223 ----~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 286 (366)
T PRK14294 223 ----VDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVP 286 (366)
T ss_pred ----CcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEE
Confidence 77777776653 345678999 99999999 9999999999999999 999999987654
No 18
>PRK14279 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4e-39 Score=329.33 Aligned_cols=252 Identities=25% Similarity=0.379 Sum_probs=188.8
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccc----ccc-
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAV----ESE- 92 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~----~~~- 92 (410)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+|||||+||++||.+|..+. ...
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~ 87 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRR 87 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhcccccccccc
Confidence 479999999999999999999999999999999999888899999999999999999999999999986322 110
Q ss_pred ----c--hhh-------hhcccc---------chhHHHHHHHHhcc-----------CCcceeeeechhHHHHHhCCcee
Q 015255 93 ----S--QEL-------ELDLSS---------LGAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVT 139 (410)
Q Consensus 93 ----~--~~~-------~~d~s~---------~g~~~~iF~~fFg~-----------~G~~i~ttVs~t~LEea~nG~~~ 139 (410)
+ .++ ..++.. .+.+.++|..||++ .|.++...+.++ |+++|+|..+
T Consensus 88 ~~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~lt-Lee~~~G~~~ 166 (392)
T PRK14279 88 FDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLD-FVEAAKGVTM 166 (392)
T ss_pred ccCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEE-HHHHhCCeEE
Confidence 0 000 011100 12245778888863 234677788887 9999999988
Q ss_pred eeecccccccccccccccc----------cccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeecccccc
Q 015255 140 VRPLLLDQHITRKVEKQCA----------HFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTK 209 (410)
Q Consensus 140 ~~~L~~g~~vC~kcegq~a----------~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k 209 (410)
...+.. ...|..|.+.++ .|.|....... .|++ +++++|.. |. |.|.++...|..|.+
T Consensus 167 ~v~~~~-~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~g~~-~~~~~C~~-C~-------G~G~~i~~~C~~C~G 234 (392)
T PRK14279 167 PLRLTS-PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRN--QGAF-GFSEPCTD-CR-------GTGSIIEDPCEECKG 234 (392)
T ss_pred EEeeec-cccCCCCccccccCCCCCCCCCCCcceEEEEEE--ecce-EEEEecCC-CC-------ceeEEeCCcCCCCCC
Confidence 776644 567888877642 33332222222 2554 46778866 99 999877778887777
Q ss_pred CCceeeeceEEEeeeeeecCcccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-
Q 015255 210 TGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM- 281 (410)
Q Consensus 210 ~gkvt~~~~~~L~~pv~~~~~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is- 281 (410)
.|.+.... .+.|+| .+| +.+++.+.|.. .++..+||| ++|.+..| +|.|.|+||+++++|+
T Consensus 235 ~g~v~~~~--~~~V~I---p~G------~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl 303 (392)
T PRK14279 235 TGVTTRTR--TINVRI---PPG------VEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSF 303 (392)
T ss_pred CeEEEEee--eeEEEe---CCC------CCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccH
Confidence 66665554 566666 667 77777776652 345667999 99999999 9999999999999999
Q ss_pred EEEeecCCchhh
Q 015255 282 IEALCAAPFTEE 293 (410)
Q Consensus 282 ~eaL~g~~~~~~ 293 (410)
.+||+|+.....
T Consensus 304 ~eAl~G~~~~v~ 315 (392)
T PRK14279 304 TELALGSTLSVP 315 (392)
T ss_pred HHHcCCceEEEE
Confidence 999999987553
No 19
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=100.00 E-value=1e-38 Score=322.53 Aligned_cols=251 Identities=24% Similarity=0.403 Sum_probs=200.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccch----h
Q 015255 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ----E 95 (410)
Q Consensus 20 d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~----~ 95 (410)
|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|+.|++||+||+||.+|+.||.+|..++..... +
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~~ 79 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGGG 79 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCCC
Confidence 7999999999999999999999999999999998 6778999999999999999999999999999876643211 1
Q ss_pred hh-hccccchhHHHHHHHHhcc-------------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc----
Q 015255 96 LE-LDLSSLGAVNTMFAALFSK-------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC---- 157 (410)
Q Consensus 96 ~~-~d~s~~g~~~~iF~~fFg~-------------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~---- 157 (410)
+. .+.+++++++++|+.||++ .+.++...+.++ |+++|+|..+...+.. ...|..|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~f~~~fg~~~g~~~~~~~~~~~~~d~~~~l~vs-Lee~~~G~~~~i~~~r-~~~C~~C~G~G~~~~ 157 (354)
T TIGR02349 80 FNGFDIGFFGDFGDIFGDFFGGGGGSGRRRRSGPRRGEDLRYDLELT-FEEAVFGVEKEIEIPR-KESCETCHGTGAKPG 157 (354)
T ss_pred cCCccccCcCchhhhHHHHhccCcccCccccCCCCCCCCeEEEEEEE-HHHHhCCeeEEEEeec-CCcCCCCCCCCCCCC
Confidence 10 1111344567899999973 134666777887 9999999988776644 56788888754
Q ss_pred --------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecC
Q 015255 158 --------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLD 229 (410)
Q Consensus 158 --------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~ 229 (410)
|++.|+.+..+++.+|++++ +++|.. |. |.|.++...|+.|.+.|.+.... .|.|.| .
T Consensus 158 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~l~V~I---p 223 (354)
T TIGR02349 158 TDPKTCPTCGGTGQVRRQQGTPFGFFQQ-QQTCPT-CG-------GEGKIIKEPCSTCKGKGRVKERK--TITVKI---P 223 (354)
T ss_pred CCCccCCCCCCeeEEEEEEeccCCceEE-EEecCC-CC-------CcceecCCCCCCCCCCcEecccc--eEEEEE---C
Confidence 23445666777888999887 668977 99 99977777788777777666554 666666 7
Q ss_pred cccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 230 QTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 230 ~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+| +.+++.+.|.. +++..+||+ ++|+...| .|.|.|+||++.+.|+ .|||+|+.+...
T Consensus 224 ~G------~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~ 289 (354)
T TIGR02349 224 AG------VDTGQRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVP 289 (354)
T ss_pred CC------CCCCCEEEEecCccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEe
Confidence 78 88888887763 345678999 99999999 9999999999999999 999999987554
No 20
>PRK14284 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=1.2e-38 Score=325.91 Aligned_cols=251 Identities=24% Similarity=0.356 Sum_probs=191.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccc---hh
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESES---QE 95 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~---~~ 95 (410)
.|||+||||+++||++|||+|||+||++||||+|++++.|.++|++|++||+||+||++|++||++|.+++..+. ..
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 389999999999999999999999999999999998888999999999999999999999999999987653210 00
Q ss_pred hhh-c-----------ccc-chhHHHHHHHHhccC---------------CcceeeeechhHHHHHhCCceeeeeccccc
Q 015255 96 LEL-D-----------LSS-LGAVNTMFAALFSKL---------------GVPIKTTVSATVLEEALNGMVTVRPLLLDQ 147 (410)
Q Consensus 96 ~~~-d-----------~s~-~g~~~~iF~~fFg~~---------------G~~i~ttVs~t~LEea~nG~~~~~~L~~g~ 147 (410)
..+ + +++ ++.++++|+.||++. |.++...+.++ |+++|+|..+...+.. .
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vs-lee~~~G~~~~i~~~r-~ 158 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLS-FEEAAKGVEKELLVSG-Y 158 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEE-HHHHhCCeeEEEEEee-e
Confidence 000 0 000 112247788888641 24567777887 9999999988777644 5
Q ss_pred cccccccccc----------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeec
Q 015255 148 HITRKVEKQC----------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAG 217 (410)
Q Consensus 148 ~vC~kcegq~----------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~ 217 (410)
..|..|.|.+ ..|.|-....... |+++ ++++|.. |. |.|.++...|..|.+.|.+...
T Consensus 159 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~--G~~~-~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~- 226 (391)
T PRK14284 159 KSCDACSGSGANSSQGIKVCDRCKGSGQVVQSR--GFFS-MASTCPE-CG-------GEGRVITDPCSVCRGQGRIKDK- 226 (391)
T ss_pred ccCCCCcccccCCCCCCeecCccCCeeEEEEEe--ceEE-EEEECCC-CC-------CCCcccCCcCCCCCCcceecce-
Confidence 6688887653 2333322222222 6654 6778976 99 9998777788878777766554
Q ss_pred eEEEeeeeeecCcccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCC
Q 015255 218 MYFLGFPVYRLDQTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAP 289 (410)
Q Consensus 218 ~~~L~~pv~~~~~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~ 289 (410)
..|.|.| .+| +.+++.+.|.. .++..|||| ++|++..| +|.|.|+||++.++|+ .+||+|+.
T Consensus 227 -~~l~V~I---p~G------~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~ 296 (391)
T PRK14284 227 -RSVHVHI---PAG------VDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMK 296 (391)
T ss_pred -EEEEEEE---CCC------CCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCe
Confidence 4677766 778 88888886663 345678999 99999999 9999999999999999 99999998
Q ss_pred chhh
Q 015255 290 FTEE 293 (410)
Q Consensus 290 ~~~~ 293 (410)
....
T Consensus 297 ~~v~ 300 (391)
T PRK14284 297 KEIP 300 (391)
T ss_pred EEEe
Confidence 7654
No 21
>PRK14281 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.2e-38 Score=324.47 Aligned_cols=253 Identities=27% Similarity=0.375 Sum_probs=193.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccch-hhh
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ-ELE 97 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~-~~~ 97 (410)
+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||.+|.+++..... ...
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~ 82 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGG 82 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCC
Confidence 6999999999999999999999999999999999987889999999999999999999999999999876642100 000
Q ss_pred hccc-cchhHHHH---HHHHhcc-----------------------------CCcceeeeechhHHHHHhCCceeeeecc
Q 015255 98 LDLS-SLGAVNTM---FAALFSK-----------------------------LGVPIKTTVSATVLEEALNGMVTVRPLL 144 (410)
Q Consensus 98 ~d~s-~~g~~~~i---F~~fFg~-----------------------------~G~~i~ttVs~t~LEea~nG~~~~~~L~ 144 (410)
..+. +..+++++ |+.||++ .|.++...+.++ |+++|+|..+...+.
T Consensus 83 ~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vt-Lee~~~G~~~~i~~~ 161 (397)
T PRK14281 83 PGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLT-LEEIAKGVEKTLKIK 161 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeE-HHHHhCCeEEEEEEE
Confidence 0000 00122333 4567752 134566777777 999999998877664
Q ss_pred ccccccccccccc-----------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCce
Q 015255 145 LDQHITRKVEKQC-----------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKV 213 (410)
Q Consensus 145 ~g~~vC~kcegq~-----------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkv 213 (410)
. ...|..|.+.+ |++.|......++.+|++++ +++|.. |. |.|.++...|..|.+.|.+
T Consensus 162 r-~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v 231 (397)
T PRK14281 162 K-QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVN-ITACPT-CG-------GEGRVVKDRCPACYGEGIK 231 (397)
T ss_pred e-eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEE-EEecCC-Cc-------ceeeeeCCCCCCCCCCccE
Confidence 4 56688887753 23334555666777888776 568866 99 9998777788878777766
Q ss_pred eeeceEEEeeeeeecCcccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEe
Q 015255 214 TSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEAL 285 (410)
Q Consensus 214 t~~~~~~L~~pv~~~~~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL 285 (410)
.... .|.|.| .+| +.+++.+.|.. ..+..+||+ |+|.+..| +|.|.|+||++.++|+ .|||
T Consensus 232 ~~~~--~~~V~I---p~G------~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl 300 (397)
T PRK14281 232 QGEV--TVKVTV---PAG------VQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLV 300 (397)
T ss_pred ecce--EEEEec---CCC------CCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHh
Confidence 6554 566666 667 77777776652 235678999 99999999 9999999999999999 9999
Q ss_pred ecCCchhh
Q 015255 286 CAAPFTEE 293 (410)
Q Consensus 286 ~g~~~~~~ 293 (410)
+|+.....
T Consensus 301 ~G~~~~i~ 308 (397)
T PRK14281 301 LGTKVEVP 308 (397)
T ss_pred cCCeEEee
Confidence 99987664
No 22
>PRK10767 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=2.8e-38 Score=321.19 Aligned_cols=252 Identities=27% Similarity=0.429 Sum_probs=194.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhh
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~ 97 (410)
.+|||+||||+++||.+|||+|||+||++||||+|++++.|.++|++|++||+||+||.+|+.||.+|.+++...+....
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 46999999999999999999999999999999999988889999999999999999999999999999876643211000
Q ss_pred h-ccccchh-HHHHHHHHhcc----------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc--------
Q 015255 98 L-DLSSLGA-VNTMFAALFSK----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC-------- 157 (410)
Q Consensus 98 ~-d~s~~g~-~~~iF~~fFg~----------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~-------- 157 (410)
+ .++++++ +.++|..||++ .|.++...+.++ |+++|+|..+...+.. ...|..|.+.+
T Consensus 83 ~~~~~~~~~~f~~~f~~~fgg~~~~~~~~~~~g~di~~~l~vs-Lee~~~G~~~~v~~~r-~~~C~~C~G~G~~~~~~~~ 160 (371)
T PRK10767 83 FGGGGGFGDIFGDIFGDIFGGGRGGGRQRARRGADLRYNMEIT-LEEAVRGVTKEIRIPT-LVTCDTCHGSGAKPGTSPK 160 (371)
T ss_pred CCCccccccchhhhhhhhccCCccccCCCCCCCCCeEEEEEee-hHHhhCCeeEEEeeee-cccCCCCCCcccCCCCCCc
Confidence 0 0112222 56788888863 245677778887 9999999987776654 56688887743
Q ss_pred --ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcccccc
Q 015255 158 --AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSM 235 (410)
Q Consensus 158 --a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g~~~~ 235 (410)
..|.|-.+.... .|+++ ++++|.. |. |.|..+...|..|.+.|.+.... .|.|.| .+|
T Consensus 161 ~C~~C~G~G~~~~~--~g~~~-~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~l~V~I---p~G---- 220 (371)
T PRK10767 161 TCPTCHGAGQVRMQ--QGFFT-VQQTCPT-CH-------GRGKIIKDPCKKCHGQGRVEKEK--TLSVKI---PAG---- 220 (371)
T ss_pred cCCCCCCeeEEEEe--eceEE-EEEeCCC-CC-------CceeECCCCCCCCCCCceEeeee--eEEEec---CCC----
Confidence 333332222221 16764 7779977 99 99977777788888877776554 666666 777
Q ss_pred cccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 236 AAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 236 ~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+.+++.+.|.. .++..+||+ ++|+...| +|.|.|+||++.+.|+ .+||+|+.....
T Consensus 221 --~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~ 284 (371)
T PRK10767 221 --VDTGDRIRLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVP 284 (371)
T ss_pred --CCCCcEEEEecCccCCCCCCCCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEe
Confidence 77777776652 345678999 99999999 9999999999999999 999999987663
No 23
>PRK14290 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4e-38 Score=319.36 Aligned_cols=254 Identities=22% Similarity=0.344 Sum_probs=192.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCc-hhhHhHHhHHhhhhccCCccccccccccccccccccchhhh
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDP-VAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~ 97 (410)
.|||+||||+++||.+|||+|||+||++||||+|++++ +|.++|+.|++||+||+||.+|+.||.+|..++...+.++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 69999999999999999999999999999999998765 78899999999999999999999999999876642111111
Q ss_pred -hccccchhHHHHHHHHhccC------------------CcceeeeechhHHHHHhCCceeeeeccccccccccccccc-
Q 015255 98 -LDLSSLGAVNTMFAALFSKL------------------GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC- 157 (410)
Q Consensus 98 -~d~s~~g~~~~iF~~fFg~~------------------G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~- 157 (410)
.++.+++++.++|..||++. +.++...+.++ |+++|+|..+...+.. ...|..|.+.+
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~ls-Lee~~~G~~~~i~~~r-~~~C~~C~G~g~ 160 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDIS-LEDAYYGTEKRIKYRR-NAMCPDCSGTGA 160 (365)
T ss_pred ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEec-HHHhcCCEEEEEEeee-cccCCCCccccC
Confidence 01112345678899888741 34666677777 9999999987776644 56688887754
Q ss_pred --------ccccceeEeeeeccCCcE-EEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeec
Q 015255 158 --------AHFYSVTITEEEARAGFV-CRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRL 228 (410)
Q Consensus 158 --------a~~ygv~i~~eqi~~G~v-~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~ 228 (410)
..|.|..+......+|++ ++.+.+|.. |. |.|......|..|.+.|.+.... .|.|.|
T Consensus 161 ~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~~~V~I--- 227 (365)
T PRK14290 161 KNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRT-CG-------GRGRIPEEKCPRCNGTGTVVVNE--DISVKI--- 227 (365)
T ss_pred CCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCC-CC-------CceeEccCCCCCCCCceeEEEee--EEEEEE---
Confidence 233332222222256765 445677766 99 88877777777777776666554 666666
Q ss_pred CcccccccccCCCCccccCC---CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 229 DQTATSMAAAKDPDAAFFKK---LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 229 ~~g~~~~~~~kd~~~~~F~~---l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
.+| +.+++.+.|.. .++..|||| ++|++.+| +|.|.|+||++.++|+ .+||+|+.+...
T Consensus 228 p~G------~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~ 292 (365)
T PRK14290 228 PKG------ATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIK 292 (365)
T ss_pred CCC------CCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEE
Confidence 677 77777776663 356789999 99999999 9999999999999999 999999987653
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.6e-38 Score=320.45 Aligned_cols=251 Identities=23% Similarity=0.384 Sum_probs=192.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhh
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~ 97 (410)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||.+|.+++...+....
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g 82 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGG 82 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCC
Confidence 47999999999999999999999999999999999988889999999999999999999999999999876643211000
Q ss_pred h-cc-ccchhHHHHHHHHhcc------------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc------
Q 015255 98 L-DL-SSLGAVNTMFAALFSK------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC------ 157 (410)
Q Consensus 98 ~-d~-s~~g~~~~iF~~fFg~------------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~------ 157 (410)
+ +. ..++.++++|+.||+. .|.++...+.++ |+++++|..+...+.. ...|..|.+.+
T Consensus 83 ~~~~~~~~~~f~d~f~~~fg~g~~~~~~~~~~~~g~di~~~l~vt-Lee~~~G~~k~i~~~r-~~~C~~C~G~G~~~~~~ 160 (373)
T PRK14301 83 FSSAEDIFSHFSDIFGDLFGFSGGGSRRGPRPQAGSDLRYNLTVS-FRQAAKGDEVTLRIPK-NVTCDDCGGSGAAPGTS 160 (373)
T ss_pred cccccccccchHHHHHHHhhccCcccccCCCCCCCCCEEEEEecc-HHHHhCCceEEEEeee-cccCCCCCCcccCCCCC
Confidence 1 11 1123456888888861 234677778887 9999999987776654 56688887753
Q ss_pred ----ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcccc
Q 015255 158 ----AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTAT 233 (410)
Q Consensus 158 ----a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g~~ 233 (410)
..|.|-...... .|+++ ++++|.. |. |.|.+....|..|.+.|.+.... .|.|+| .+|
T Consensus 161 ~~~C~~C~G~G~v~~~--~G~~~-~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~l~V~I---p~G-- 222 (373)
T PRK14301 161 PETCRHCGGSGQVRQS--QGFFQ-IAVPCPV-CR-------GEGRVITHPCPKCKGSGIVQQTR--ELKVRI---PAG-- 222 (373)
T ss_pred CcccCCccCeeEEEEE--eeeEE-EEEeCCC-CC-------ceeeecCCCCCCCCCCceeccce--EEEEEe---CCC--
Confidence 233332222222 36654 4888976 99 99977777888777777665554 566666 667
Q ss_pred cccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchh
Q 015255 234 SMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTE 292 (410)
Q Consensus 234 ~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~ 292 (410)
+.+++.+.|.. .++..+||+ |+|....| .|.|.|+||+++++|+ .+||+|+.+..
T Consensus 223 ----~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v 285 (373)
T PRK14301 223 ----VDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEV 285 (373)
T ss_pred ----CcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEE
Confidence 77777775552 235668999 99999999 9999999999999999 99999998765
No 25
>PRK14295 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=3.6e-38 Score=321.99 Aligned_cols=251 Identities=26% Similarity=0.396 Sum_probs=190.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccc----ccccccccc-
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDT----AGFEAVESE- 92 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~----~g~~~~~~~- 92 (410)
..|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||. +|.+++...
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~ 87 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGP 87 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCC
Confidence 479999999999999999999999999999999999888899999999999999999999999998 887665421
Q ss_pred --c--hhhhhcccc-------------c-hhHHHHHHHHhcc--------CCcceeeeechhHHHHHhCCceeeeecccc
Q 015255 93 --S--QELELDLSS-------------L-GAVNTMFAALFSK--------LGVPIKTTVSATVLEEALNGMVTVRPLLLD 146 (410)
Q Consensus 93 --~--~~~~~d~s~-------------~-g~~~~iF~~fFg~--------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g 146 (410)
+ .++.++... + +.+.++|..||++ .|.++...+.++ |+++|+|..+...+..
T Consensus 88 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~g~di~~~l~ls-Lee~~~G~~k~i~~~r- 165 (389)
T PRK14295 88 GGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGGRRTQPRRGADVESEVTLS-FTEAIDGATVPLRLTS- 165 (389)
T ss_pred CCCCCCCCCcccccccccccccccccccccchhhhhcccccCCCCCCCCCCCCCEEEEEEEE-HHHHhCCceEEEEeec-
Confidence 0 011111100 1 1245677777763 245777788887 9999999987776644
Q ss_pred ccccccccccc----------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeee
Q 015255 147 QHITRKVEKQC----------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSA 216 (410)
Q Consensus 147 ~~vC~kcegq~----------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~ 216 (410)
...|..|.+.+ ..|.|-....... |++ +++++|.. |. |.|.++...|..|.+.|.+...
T Consensus 166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~--g~~-~~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~~~~~ 234 (389)
T PRK14295 166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNS--GGF-SLSEPCPD-CK-------GRGLIADDPCLVCKGSGRAKSS 234 (389)
T ss_pred cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEe--cce-EEEEecCC-Cc-------ceeEEeccCCCCCCCCceEeee
Confidence 56788887653 2333322222222 443 46778866 99 9998777788888877766654
Q ss_pred ceEEEeeeeeecCcccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecC
Q 015255 217 GMYFLGFPVYRLDQTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAA 288 (410)
Q Consensus 217 ~~~~L~~pv~~~~~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~ 288 (410)
. .|.|.| .+| +.+++.+.|.. .++..+||+ |+|....| +|.|.|+||++.+.|+ .+||+|+
T Consensus 235 ~--~l~V~I---p~G------~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~ 303 (389)
T PRK14295 235 R--TMQVRI---PAG------VSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGA 303 (389)
T ss_pred e--EEEEEe---CCC------CCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCC
Confidence 4 666666 667 77777776652 345678999 99999999 9999999999999999 9999999
Q ss_pred Cchh
Q 015255 289 PFTE 292 (410)
Q Consensus 289 ~~~~ 292 (410)
....
T Consensus 304 ~~~I 307 (389)
T PRK14295 304 EVRV 307 (389)
T ss_pred eEEE
Confidence 8765
No 26
>PRK14291 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.8e-37 Score=313.15 Aligned_cols=250 Identities=28% Similarity=0.400 Sum_probs=187.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchh--
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQE-- 95 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~-- 95 (410)
.+|||+||||+++||.+|||+|||+||++||||+|++ +.|.++|++|++||+||+||.+|+.||.+|..++......
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 80 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ 80 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence 4799999999999999999999999999999999984 7889999999999999999999999999998765422110
Q ss_pred hhhccc--cchhHHHHHHHHh---------cc---------------CCcceeeeechhHHHHHhCCceeeeeccccccc
Q 015255 96 LELDLS--SLGAVNTMFAALF---------SK---------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHI 149 (410)
Q Consensus 96 ~~~d~s--~~g~~~~iF~~fF---------g~---------------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~v 149 (410)
....++ ...+++++|..|| ++ .|.++...+.++ |+++|+|..+...+.. ...
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vs-Lee~~~G~~~~i~~~r-~~~ 158 (382)
T PRK14291 81 GQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEIS-LEEAYTGTTVSLEVPR-YVP 158 (382)
T ss_pred cccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEE-HHHhhCCEEEEEEEee-ecc
Confidence 000111 1123456666553 21 134666777777 9999999987776644 566
Q ss_pred cccccccc----------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceE
Q 015255 150 TRKVEKQC----------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMY 219 (410)
Q Consensus 150 C~kcegq~----------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~ 219 (410)
|..|.+.+ ..|.|-...... +++++++++|.. |. |.| .+...|..|.+.|.+....
T Consensus 159 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~---~g~~~~~~~C~~-C~-------G~G-~~~~~C~~C~G~g~v~~~~-- 224 (382)
T PRK14291 159 CEACGGTGYDPGSGEKVCPTCGGSGEIYQR---GGFFRISQTCPT-CG-------GEG-VLREPCSKCNGRGLVIKKE-- 224 (382)
T ss_pred CCCCccccCCCCCCCccCCCCCCceEEEEe---cceEEEEecCCC-CC-------Cce-EEccCCCCCCCCceEEeee--
Confidence 88887753 233332222222 244566788866 99 777 5667788887777666554
Q ss_pred EEeeeeeecCcccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCch
Q 015255 220 FLGFPVYRLDQTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFT 291 (410)
Q Consensus 220 ~L~~pv~~~~~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~ 291 (410)
.|.|.| .+| +.+|+.+.|.. .++..|||| ++|.+..| +|.|.|+||++.+.|+ .+||+|+...
T Consensus 225 ~l~V~I---p~G------~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~ 295 (382)
T PRK14291 225 TIKVRI---PPG------VDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELE 295 (382)
T ss_pred EEEEEe---CCC------CCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEE
Confidence 666666 778 88888886663 346789999 99999999 9999999999999999 9999999876
Q ss_pred hh
Q 015255 292 EE 293 (410)
Q Consensus 292 ~~ 293 (410)
..
T Consensus 296 i~ 297 (382)
T PRK14291 296 VP 297 (382)
T ss_pred Ee
Confidence 54
No 27
>PRK14283 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=7.2e-37 Score=311.55 Aligned_cols=253 Identities=26% Similarity=0.389 Sum_probs=193.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccch-hh
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQ-EL 96 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~-~~ 96 (410)
.+|||+||||+++||.+|||+|||+||++||||+|+ +++|.++|++|++||+||+||.+|++||.+|.+++...+. +.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~ 82 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSE-EEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDI 82 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccccc
Confidence 579999999999999999999999999999999998 4789999999999999999999999999999876542110 00
Q ss_pred ----h-hc-cccch-hHHHHHHHH-hcc-------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc----
Q 015255 97 ----E-LD-LSSLG-AVNTMFAAL-FSK-------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC---- 157 (410)
Q Consensus 97 ----~-~d-~s~~g-~~~~iF~~f-Fg~-------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~---- 157 (410)
. .+ +.+++ ++.++|..| |++ .|.++...+.++ |+++|+|..+...+.. ...|..|.|.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~~~~~~kg~di~~~l~vs-Led~~~G~~~~i~~~r-~~~C~~C~G~G~~~~ 160 (378)
T PRK14283 83 FNNINFEDIFQGFGFGIGNIFDMFGFGGGSRHGPQRGADIYTEVEIT-LEEAASGVEKDIKVRH-TKKCPVCNGSRAEPG 160 (378)
T ss_pred ccccCccccccccccchhhhccccccCCCCCCCccCCCCeEEEeeee-HHHHhCCcceEEEeee-eccCCCCCccccCCC
Confidence 0 00 11111 234566666 553 345777788887 9999999987766644 45687777642
Q ss_pred --------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecC
Q 015255 158 --------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLD 229 (410)
Q Consensus 158 --------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~ 229 (410)
|++.|+....++..+|++++ +++|.. |. |.|..+...|..|.+.|.+.... .|.+.| .
T Consensus 161 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~l~V~I---p 226 (378)
T PRK14283 161 SEVKTCPTCGGTGQVKQVRNTILGQMMN-VTTCPD-CQ-------GEGKIVEKPCSNCHGKGVVRETK--TISVKI---P 226 (378)
T ss_pred CCCccCCCcCCccEEEEEEeccCceEEE-EEECCC-CC-------ccceecCCCCCCCCCceeeccce--eEEEEE---C
Confidence 23345556666777888765 468866 99 99977777788777777666554 666666 6
Q ss_pred cccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 230 QTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 230 ~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+| +.++..+.|.. ..+..+||+ |.|++..| +|.|.|+||++.++|+ .+||+|+.....
T Consensus 227 pG------~~~G~~i~l~g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~ 292 (378)
T PRK14283 227 AG------VETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVP 292 (378)
T ss_pred CC------CCCCcEEEEeccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEE
Confidence 67 77777776652 235678999 99999999 9999999999999999 999999887654
No 28
>PRK14300 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=4.8e-36 Score=304.84 Aligned_cols=250 Identities=20% Similarity=0.354 Sum_probs=187.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCcccccccccccccccccc---c-h
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE---S-Q 94 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~---~-~ 94 (410)
.|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||.+|.+++... + .
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTD-AKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 69999999999999999999999999999999998 56788999999999999999999999999998765421 0 0
Q ss_pred hhhhccc-cc-hhHHHHHHHHhcc-----------CCcceeeeechhHHHHHhCCceeeeeccccccccccccccc----
Q 015255 95 ELELDLS-SL-GAVNTMFAALFSK-----------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC---- 157 (410)
Q Consensus 95 ~~~~d~s-~~-g~~~~iF~~fFg~-----------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~---- 157 (410)
+...++. ++ ..+.++|..+|++ .|.++...+.++ |+++++|..+...+.. ...|..|.|++
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~s-Lee~~~G~~k~i~~~r-~~~C~~C~G~g~~~~ 159 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTIN-LEEAFHGIEKNISFSS-EVKCDTCHGSGSEKG 159 (372)
T ss_pred CCCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEE-HHHHhCCceEEEEeee-ccccCCCCCcccCCC
Confidence 0000111 11 1234455555542 234566677777 9999999987766644 56688888754
Q ss_pred ------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcc
Q 015255 158 ------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQT 231 (410)
Q Consensus 158 ------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g 231 (410)
..|.|...... ..|+++ ++++|.. |. |.|.++...|..|.+.|.+.... .+.|+| .+|
T Consensus 160 ~~~~~C~~C~G~G~~~~--~~g~~~-~~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~~~V~I---p~G 223 (372)
T PRK14300 160 ETVTTCDACSGVGATRM--QQGFFT-IEQACHK-CQ-------GNGQIIKNPCKKCHGMGRYHKQR--NLSVNI---PAG 223 (372)
T ss_pred CCCccCCCccCeEEEEE--eeceEE-EEEeCCC-CC-------ccceEeCCCCCCCCCceEEEeeE--EEEEEE---CCC
Confidence 23333222222 347776 6778966 99 99987777888788777766555 566666 667
Q ss_pred cccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 232 ATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 232 ~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+.+++.+.|.. .++..|||+ ++|...+| .|.|.|+||++.+.|+ .+||+|+.....
T Consensus 224 ------~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~ 287 (372)
T PRK14300 224 ------VENGTRIRHTGEGEAGIRGGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVP 287 (372)
T ss_pred ------CCCCcEEEEeccccCCCCCCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEe
Confidence 77777776663 345678999 99999999 9999999999999999 999999887654
No 29
>PRK14293 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=5e-36 Score=304.95 Aligned_cols=250 Identities=24% Similarity=0.358 Sum_probs=193.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhhh
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELEL 98 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~~ 98 (410)
.|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|+.|++||+||+||.+|+.||.+|.+++.... ...
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~-~~~- 79 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNK-EPGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAA-GFP- 79 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CcCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCC-CcC-
Confidence 69999999999999999999999999999999998 567899999999999999999999999999987654211 100
Q ss_pred ccccchhHHHHHHHHhccC-----------------CcceeeeechhHHHHHhCCceeeeeccccccccccccccc----
Q 015255 99 DLSSLGAVNTMFAALFSKL-----------------GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC---- 157 (410)
Q Consensus 99 d~s~~g~~~~iF~~fFg~~-----------------G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~---- 157 (410)
+..+++.++++|..||+++ +.++...+.++ |+++|+|..+...+.. ...|..|.+.+
T Consensus 80 ~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vs-Lee~~~G~~k~i~~~r-~~~C~~C~G~G~~~~ 157 (374)
T PRK14293 80 DMGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLD-FREAIFGGEKEIRIPH-LETCETCRGSGAKPG 157 (374)
T ss_pred CcccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEee-HHHHhCCceEEEEeec-cccCCCCCCcCCCCC
Confidence 1112334567899888531 23566667777 9999999987776644 56688887643
Q ss_pred --------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecC
Q 015255 158 --------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLD 229 (410)
Q Consensus 158 --------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~ 229 (410)
|++.|+.....++.+|++++ +++|.. |. |.|..+...|..|.+.|.+.... .+.|.| .
T Consensus 158 ~~~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~~~V~I---p 223 (374)
T PRK14293 158 TGPTTCSTCGGAGQVRRATRTPFGSFTQ-VSECPT-CN-------GTGQVIEDPCDACGGQGVKQVTK--KLKINI---P 223 (374)
T ss_pred CCCeeCCCCCCcceEEEEEecCcceEEE-EeeCCC-CC-------cceeEeccCCCCCCCCcccccce--EEEEEe---C
Confidence 24445555666778888876 578866 99 99977777788777777776665 445544 5
Q ss_pred cccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 230 QTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 230 ~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+| +.+++.+.+.. +.+..+||+ ++|....| .|.|.|+||+++++|+ .+||+|+++...
T Consensus 224 pG------~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~ 289 (374)
T PRK14293 224 AG------VDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVD 289 (374)
T ss_pred CC------CCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEec
Confidence 56 66666665552 345568999 99999999 9999999999999999 999999987764
No 30
>PRK14289 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.4e-36 Score=304.47 Aligned_cols=254 Identities=23% Similarity=0.305 Sum_probs=191.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccc-h-h
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESES-Q-E 95 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~-~-~ 95 (410)
.+|||+||||+++||.+|||+|||+||++||||+|+++++|.++|++|++||+||+||.+|+.||.+|..++.... . +
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG 83 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence 4799999999999999999999999999999999998889999999999999999999999999999987654210 0 0
Q ss_pred h---hhcccc-chhHHHHHHHHhcc-----------------CCcceeeeechhHHHHHhCCceeeeecccccccccccc
Q 015255 96 L---ELDLSS-LGAVNTMFAALFSK-----------------LGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVE 154 (410)
Q Consensus 96 ~---~~d~s~-~g~~~~iF~~fFg~-----------------~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kce 154 (410)
+ ..++.. +..+.++|..+|++ .|.++...+.++ |+++|+|..+...+.. ...|..|.
T Consensus 84 ~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vs-Lee~~~G~~~~i~~~r-~~~C~~C~ 161 (386)
T PRK14289 84 FSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLN-LKEISTGVEKKFKVKK-YVPCSHCH 161 (386)
T ss_pred CCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEE-HHHhhCCeEEEEEEEe-ecccCCCC
Confidence 0 001100 01112223332221 123566677777 9999999988776644 56688887
Q ss_pred ccc------------ccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEe
Q 015255 155 KQC------------AHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLG 222 (410)
Q Consensus 155 gq~------------a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~ 222 (410)
+.+ |++.|..+..+++.+|+++. +.+|.. |. |.|..+...|..|.+.|.+.... .+.
T Consensus 162 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~-~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~~~ 230 (386)
T PRK14289 162 GTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQT-QSTCPT-CN-------GEGKIIKKKCKKCGGEGIVYGEE--VIT 230 (386)
T ss_pred CCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEE-EEecCC-CC-------ccccccCcCCCCCCCCcEEeeeE--EEE
Confidence 754 23445666667778898875 888977 99 99977777888787777776665 455
Q ss_pred eeeeecCcccccccccCCCCccccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 223 FPVYRLDQTATSMAAAKDPDAAFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 223 ~pv~~~~~g~~~~~~~kd~~~~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
|+| .+| +.+++.+.+.. +.+..+||+ |+|+...| .|.|.|+||++++.|+ .+||+|+.+...
T Consensus 231 V~I---p~G------~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~ 300 (386)
T PRK14289 231 VKI---PAG------VAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVP 300 (386)
T ss_pred EEe---CCC------CCCCCEEEEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEee
Confidence 555 556 55666664442 346678999 99999999 9999999999999999 999999987654
No 31
>PRK14292 chaperone protein DnaJ; Provisional
Probab=100.00 E-value=8.3e-35 Score=295.75 Aligned_cols=249 Identities=24% Similarity=0.290 Sum_probs=186.8
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhhh
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELEL 98 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~~ 98 (410)
.|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||.+|.++......+ .
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~-~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~--~ 78 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNK-EKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGG--D 78 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC-ChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCC--c
Confidence 49999999999999999999999999999999997 57789999999999999999999999999998653211000 0
Q ss_pred ccccc-hhHHHHHHHHhccC-------------CcceeeeechhHHHHHhCCceeeeeccccccccccccccc-------
Q 015255 99 DLSSL-GAVNTMFAALFSKL-------------GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQC------- 157 (410)
Q Consensus 99 d~s~~-g~~~~iF~~fFg~~-------------G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~------- 157 (410)
.+.++ .++.++|..|||+. |.++...+.++ |+++++|......+.. ...|..|.+.+
T Consensus 79 ~~~~~~~d~~d~f~~~fg~~~~~~~~~~~~~~~g~d~~~~l~~s-Lee~~~G~~~~v~~~r-~~~C~~C~G~G~~~~~~~ 156 (371)
T PRK14292 79 PFGGMGFDPMDIFEQLFGGAGFGGGRGRRGPARGDDLETEARIT-LEQARAGEEVEVEVDR-LTECEHCHGSRTEPGGKP 156 (371)
T ss_pred ccCccCCChHHHHHHhhCCCCcCCCCCcccccCCCCeEEEEecc-HHHHcCCeEEEEEEEe-eecCCCCcccccCCCCCC
Confidence 11111 13458899998842 23566667777 9999999987666544 45587777643
Q ss_pred ----c--cccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcc
Q 015255 158 ----A--HFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQT 231 (410)
Q Consensus 158 ----a--~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g 231 (410)
. ++.|......+..+|++++ +++|.. |. |.|......|..|.+.|.+.... .|.|+| .+|
T Consensus 157 ~~~C~~C~G~G~~~~~~~~~~g~~~~-~~~C~~-C~-------G~G~~~~~~C~~C~G~g~v~~~~--~~~V~I---p~G 222 (371)
T PRK14292 157 PKTCPTCRGAGAVRAQARTIFGVVET-QQPCPT-CR-------GEGQIITDPCTVCRGRGRTLKAE--TVKVKL---PRG 222 (371)
T ss_pred CccCCCCCCccEEEEEEeccCceEEE-eeecCC-Cc-------ccceecCCCCCCCCCceEEeecc--eEEEEE---CCC
Confidence 2 2233444444556688765 678876 99 88877777788777777666554 566666 666
Q ss_pred cccccccCCCCccccCCC----CCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 232 ATSMAAAKDPDAAFFKKL----DGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 232 ~~~~~~~kd~~~~~F~~l----~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+.++..+.|... ++.. ||+ ++|....| .|.|.|+||++.+.|+ .+||+|+.+...
T Consensus 223 ------~~~G~~i~~~G~G~~~~~~~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~ 284 (371)
T PRK14292 223 ------IDEGYRIRVAGMGNEGPGGN-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVP 284 (371)
T ss_pred ------CCCCcEEEEecCcCCCCCCC-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEE
Confidence 666666655522 2223 999 99999999 9999999999999999 999999987664
No 32
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.96 E-value=4e-29 Score=246.51 Aligned_cols=210 Identities=29% Similarity=0.372 Sum_probs=140.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCcccccccccccccccccc--c--
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE--S-- 93 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~--~-- 93 (410)
..|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||.+|.++.... +
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~ 81 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNK-SPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPP 81 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-ChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCC
Confidence 379999999999999999999999999999999997 67899999999999999999999999999998654211 0
Q ss_pred --hhhhhcccc--chhHHHHHHHHhccCCcceeeeechhHHHHHhCCceeeeecccccccccccccccccccceeEeeee
Q 015255 94 --QELELDLSS--LGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSVTITEEE 169 (410)
Q Consensus 94 --~~~~~d~s~--~g~~~~iF~~fFg~~G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~a~~ygv~i~~eq 169 (410)
.....++++ +++++++|..|||+.+..-. ..+ ++.+ .. .+ .. ....-.+.+.|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~---~g~----~~~~-~~-----~~-----~~-~g~dl~~~l~isL~e 142 (291)
T PRK14299 82 PGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGG---FGD----LFGS-VG-----RR-----AR-KGRDLEAELPLTLEE 142 (291)
T ss_pred CCCCCCCCccccCcCCHHHHHHHHhCCCCCCCC---ccc----cccc-cc-----CC-----CC-CCCCEEEEEEecHHH
Confidence 000011111 24567889999975221000 000 0000 00 00 00 001122334555555
Q ss_pred ccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcccccccccCCCCccccCCC
Q 015255 170 ARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDAAFFKKL 249 (410)
Q Consensus 170 i~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g~~~~~~~kd~~~~~F~~l 249 (410)
+..|....+.. .| ..+.|+| .+| +.+++.+.|...
T Consensus 143 a~~G~~~~i~l---------------~g---------------------~~~~V~I---p~G------~~~G~~ir~~g~ 177 (291)
T PRK14299 143 AYRGGEKVVEV---------------AG---------------------ERLSVRI---PPG------VREGQVIRLAGK 177 (291)
T ss_pred HhCCCeEEEee---------------CC---------------------EEEEEec---CCC------cCCCcEEEECCC
Confidence 55553333210 01 1344444 667 777777766544
Q ss_pred CCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 250 DGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 250 ~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
.. +.||+ +.|....| .|.|.|+||++.++|+ .+||||+.....
T Consensus 178 G~-~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~ 223 (291)
T PRK14299 178 GR-QGGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVM 223 (291)
T ss_pred CC-CCCCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEE
Confidence 22 22899 99999999 9999999999999999 999999876554
No 33
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.95 E-value=4.3e-28 Score=240.75 Aligned_cols=205 Identities=24% Similarity=0.328 Sum_probs=142.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCcccccccccccccc----ccccch
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEA----VESESQ 94 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~----~~~~~~ 94 (410)
+|||+||||+++||.+|||+|||+||++||||+|+ ++.|.++|++|++||+||+||.+|+.||.+|... +.....
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~-~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~~ 82 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQ 82 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCC-CccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCcccccccc
Confidence 69999999999999999999999999999999987 4679999999999999999999999999987431 111000
Q ss_pred hhhhccccchhHHHHHHHHhccC-----------CcceeeeechhHHHHHhCCceeeeecccccccccccccccccccce
Q 015255 95 ELELDLSSLGAVNTMFAALFSKL-----------GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCAHFYSV 163 (410)
Q Consensus 95 ~~~~d~s~~g~~~~iF~~fFg~~-----------G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~a~~ygv 163 (410)
....+..+..++.++|+.||++. |.++...+.++ |++++.|..+...+.. .+| .
T Consensus 83 ~~~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~kg~di~~~v~is-Lee~~~G~~k~i~~~~--~~~---~--------- 147 (306)
T PRK10266 83 HGDGQSFNAEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVF-LEETLTEHKRTISYNL--PVY---N--------- 147 (306)
T ss_pred cCCCCCCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCceEEEEEEE-HHHhcCCceEEEEEec--ccc---c---------
Confidence 00000012235678899998842 34556666666 7777777654332211 001 0
Q ss_pred eEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcccccccccCCCCc
Q 015255 164 TITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDPDA 243 (410)
Q Consensus 164 ~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g~~~~~~~kd~~~ 243 (410)
+.|++.+ .....+.|+| .+| +.+|..
T Consensus 148 -------g~G~~~~--------------------------------------~~~~~~~V~I---p~G------~~~G~~ 173 (306)
T PRK10266 148 -------AFGMIEQ--------------------------------------EIPKTLNVKI---PAG------VGNGQR 173 (306)
T ss_pred -------CCCeEEE--------------------------------------eeeEEEEEEE---CCC------CcCCcE
Confidence 0011100 0011344444 455 555555
Q ss_pred cccCC-----CCCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchhh
Q 015255 244 AFFKK-----LDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTEE 293 (410)
Q Consensus 244 ~~F~~-----l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~~ 293 (410)
+.|.. .++..+||+ ++|....| +|.|.|+||+++++|+ .+||+|+.....
T Consensus 174 i~~~g~G~~~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~ 231 (306)
T PRK10266 174 IRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVP 231 (306)
T ss_pred EEEecCCcCCCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEee
Confidence 54442 456678999 99999999 9999999999999999 999999887654
No 34
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.6e-24 Score=210.76 Aligned_cols=227 Identities=27% Similarity=0.351 Sum_probs=148.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhh
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELE 97 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~ 97 (410)
..|||+||||+++||..|||+||++||++||||.|++ ++|.++|++|.+||+||+|+++|..||..|..+...
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~------ 114 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGE------ 114 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcccc------
Confidence 3499999999999999999999999999999999985 499999999999999999999999999988754100
Q ss_pred hccccchhHHHHHHHHhcc-C-----CcceeeeechhHHHHHhCCceeeeecccccccccccccccc----------ccc
Q 015255 98 LDLSSLGAVNTMFAALFSK-L-----GVPIKTTVSATVLEEALNGMVTVRPLLLDQHITRKVEKQCA----------HFY 161 (410)
Q Consensus 98 ~d~s~~g~~~~iF~~fFg~-~-----G~~i~ttVs~t~LEea~nG~~~~~~L~~g~~vC~kcegq~a----------~~y 161 (410)
..|...++|..+|++ . +.++.....++ |+++-.|......+.. ...|..|.+.+. .+.
T Consensus 115 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-f~~A~~g~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~ 188 (288)
T KOG0715|consen 115 ----FGGNPFDVFLEFFGGKMNKRVPDKDQYYDLSLD-FKEAVRGSKKRISFNV-LSDCETCFGSGAEEGAKRESCKTCS 188 (288)
T ss_pred ----ccCCccchHHHhhcccccccccCcccccccccC-HHHHhhccccceEEEe-ecccccccCcCcccccccccchhhh
Confidence 112345667777766 2 33444555555 7888777743333322 234666665432 222
Q ss_pred ceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcceeeeccccccCCceeeeceEEEeeeeeecCcccccccccCCC
Q 015255 162 SVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTGKVTSAGMYFLGFPVYRLDQTATSMAAAKDP 241 (410)
Q Consensus 162 gv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g~~~~~~~kd~ 241 (410)
|......-...++... +|. +|. +.|-+....|.-|.+.|.+..+....+.+|. | --++
T Consensus 189 ~~~~~~~~~~~~f~~~---~~~-~c~-------~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~-----g------~~~~ 246 (288)
T KOG0715|consen 189 GRGLVSNPKEDPFILY---TCS-YCL-------GRGLVLRDNCQACSGAGQVRRAKDIMIVLPA-----G------VRSA 246 (288)
T ss_pred CcccccccccCCccee---ecc-ccc-------ccceeccchHHHhhcchhhhhheeEEeecCc-----c------cccc
Confidence 2221111122333333 453 366 5554444446667777866555433344433 3 3333
Q ss_pred CccccCCCCCCCccce-EEEeccce-eEEEeCCceeEeeeeeE
Q 015255 242 DAAFFKKLDGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYMI 282 (410)
Q Consensus 242 ~~~~F~~l~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is~ 282 (410)
..+.+..+..- ++ +.|.+..+ .|.|.|+|+++.+.|++
T Consensus 247 ~~l~~~~~~~~---~l~v~~~v~~~~~~~r~~~~i~~~~~i~~ 286 (288)
T KOG0715|consen 247 DTLRFAGHGND---DLFVRLIVAKSPSFRREGKDILYDAIISF 286 (288)
T ss_pred cEEEEecCCcc---eEEEEEEeccCcccccccCcccccccccc
Confidence 44433333222 77 77777777 99999999999999884
No 35
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.5e-19 Score=172.82 Aligned_cols=77 Identities=52% Similarity=0.855 Sum_probs=71.8
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCcccccccccccccccc
Q 015255 14 GKQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVE 90 (410)
Q Consensus 14 ~~~~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~ 90 (410)
....+-|+|+|||++++|+.++||+|||+|+++||||+++++|++.++|++||.||+||+||.+|..||.+|..++.
T Consensus 26 ~~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 26 EDVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred cccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 44457799999999999999999999999999999999999999999999999999999999999999999876654
No 36
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.2e-19 Score=183.66 Aligned_cols=78 Identities=42% Similarity=0.701 Sum_probs=71.0
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-chhhHhHHhHHhhhhccCCcccccccccccccccccc
Q 015255 15 KQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAND-PVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE 92 (410)
Q Consensus 15 ~~~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~ 92 (410)
+...++||+||||.++|++.|||++||+|||+|||||||+. .+|+++|+.|+.||+|||||+.|.|||++.++.|...
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~ 82 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGK 82 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCC
Confidence 44568999999999999999999999999999999999866 4699999999999999999999999999988776543
No 37
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=7e-19 Score=172.84 Aligned_cols=73 Identities=48% Similarity=0.792 Sum_probs=69.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCcccccccccccccccc
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVE 90 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~ 90 (410)
..|||+||||+.+||+.||++|||++|++|||||||+||.|.++|+.+.+||+||+||.+|..||..|.....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~ 76 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSS 76 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccc
Confidence 5799999999999999999999999999999999999999999999999999999999999999998876543
No 38
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.74 E-value=1.4e-18 Score=189.03 Aligned_cols=78 Identities=29% Similarity=0.501 Sum_probs=71.2
Q ss_pred cCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccc
Q 015255 13 AGKQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVES 91 (410)
Q Consensus 13 ~~~~~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~ 91 (410)
.......+||+||||+++||..|||+|||+||++||||+|+++ .|..+|+.|++||+|||||.+|+.||.+|..++..
T Consensus 567 t~~~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~~ 644 (1136)
T PTZ00341 567 TIEIPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKG 644 (1136)
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccCC
Confidence 4445678999999999999999999999999999999999965 68899999999999999999999999999877653
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=4.7e-18 Score=172.24 Aligned_cols=78 Identities=35% Similarity=0.660 Sum_probs=70.1
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCc---hhhHhHHhHHhhhhccCCcccccccccccccccccc
Q 015255 16 QLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDP---VAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESE 92 (410)
Q Consensus 16 ~~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~---~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~ 92 (410)
....|||.+|+|+++||.+|||+|||++++.|||||..+.. .|.+.|+.|.+||||||||++|.+||.+|+++++-.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t~ 85 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKTE 85 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccccc
Confidence 34579999999999999999999999999999999987322 388999999999999999999999999999998743
Q ss_pred c
Q 015255 93 S 93 (410)
Q Consensus 93 ~ 93 (410)
+
T Consensus 86 g 86 (546)
T KOG0718|consen 86 G 86 (546)
T ss_pred C
Confidence 3
No 40
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.70 E-value=5.2e-18 Score=130.12 Aligned_cols=63 Identities=49% Similarity=0.985 Sum_probs=60.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCc-hhhHhHHhHHhhhhccCCcccccccc
Q 015255 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDP-VAADIFKEVTFSYNILSDPDKRRQYD 82 (410)
Q Consensus 20 d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD 82 (410)
|||+||||+++|+.++||+||+++++.+|||+++++. .+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999998766 68899999999999999999999998
No 41
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2e-17 Score=155.16 Aligned_cols=110 Identities=37% Similarity=0.575 Sum_probs=83.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCC--CCchhhHhHHhHHhhhhccCCccccccccccccccccccc
Q 015255 16 QLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNA--NDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESES 93 (410)
Q Consensus 16 ~~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~--~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~ 93 (410)
...+|+|+||||.++||+.+|++||++|||.||||+++ +..+|+++|+.++.||+||+|.++|+.||..|.-. ...
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id--d~~ 88 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID--DES 88 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC--Ccc
Confidence 34569999999999999999999999999999999995 34579999999999999999999999999988633 111
Q ss_pred hhhhhccccchhHHHHHHHHhccCCcceeeeechhHHHHHhCCce
Q 015255 94 QELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGMV 138 (410)
Q Consensus 94 ~~~~~d~s~~g~~~~iF~~fFg~~G~~i~ttVs~t~LEea~nG~~ 138 (410)
... +.+.-.+|.++|-. .+..+++.++..|.|..
T Consensus 89 ~d~------~~~~~e~~~~iyk~-----VteedIeef~a~Y~gSE 122 (264)
T KOG0719|consen 89 GDI------DEDWLEFWRAIYKK-----VTEEDIEEFEANYQGSE 122 (264)
T ss_pred chh------hhHHHHHHHHHHhh-----cccccHHHHHHHhcccH
Confidence 111 12334567777653 23334455676677764
No 42
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.61 E-value=5.3e-16 Score=165.97 Aligned_cols=89 Identities=45% Similarity=0.803 Sum_probs=74.4
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhhhh
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQELEL 98 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~~~ 98 (410)
+|||+||||+++|+..+||+|||+||++||||++++ +.+..+|+.|++||++|+||.+|+.||.+|..+.....
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d~e~----- 75 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVDRED----- 75 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccccccc-----
Confidence 699999999999999999999999999999999985 77889999999999999999999999999876654321
Q ss_pred ccccchhHHHHHHHHhcc
Q 015255 99 DLSSLGAVNTMFAALFSK 116 (410)
Q Consensus 99 d~s~~g~~~~iF~~fFg~ 116 (410)
++....++|..||+.
T Consensus 76 ---gf~f~~DIF~sfFee 90 (871)
T TIGR03835 76 ---DFDFQADVFNSFFEE 90 (871)
T ss_pred ---ccchhHHHHHHHhhh
Confidence 111223567777754
No 43
>PHA03102 Small T antigen; Reviewed
Probab=99.61 E-value=5.3e-16 Score=139.24 Aligned_cols=84 Identities=20% Similarity=0.363 Sum_probs=70.1
Q ss_pred CCcccccCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccccccccchhh
Q 015255 19 RDPYEVLGVSRNC--TDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVESESQEL 96 (410)
Q Consensus 19 ~d~Y~vLgv~~~A--s~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~~~~~~ 96 (410)
..+|+||||+++| |..+||+|||++|+++|||++++ .++|+.|++||++|+|+.+|..||.+|........
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~~~--- 77 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEEDSSSEEE--- 77 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCccccccc---
Confidence 4689999999999 99999999999999999999753 36999999999999999999999999875443221
Q ss_pred hhccccchhHHHHHHHHhcc
Q 015255 97 ELDLSSLGAVNTMFAALFSK 116 (410)
Q Consensus 97 ~~d~s~~g~~~~iF~~fFg~ 116 (410)
.....+|.++||+
T Consensus 78 -------~~~~~~f~~~fg~ 90 (153)
T PHA03102 78 -------DVPSGYVGATFGD 90 (153)
T ss_pred -------ccHHHHhhhhcCC
Confidence 1145677777764
No 44
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.60 E-value=8.2e-16 Score=116.07 Aligned_cols=59 Identities=56% Similarity=0.921 Sum_probs=54.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCC-CchhhHhHHhHHhhhhccCCccc
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAN-DPVAADIFKEVTFSYNILSDPDK 77 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~-~~~a~~~f~~i~~Ay~vLsdp~k 77 (410)
.|||+||||+++++.++||+||+++++.+|||++++ .+.+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999986 56788999999999999999853
No 45
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.57 E-value=5.6e-16 Score=153.05 Aligned_cols=75 Identities=43% Similarity=0.756 Sum_probs=66.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCc---hhhHhHHhHHhhhhccCCccccccccccccccccc
Q 015255 16 QLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDP---VAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVES 91 (410)
Q Consensus 16 ~~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~---~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~ 91 (410)
+..+|||+||||.++|+..||-+|||++|.+||||-..+.. .|.++|..|..|-+||+||++|++||. |.+.++.
T Consensus 391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPLD~ 468 (504)
T KOG0624|consen 391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPLDP 468 (504)
T ss_pred hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCCCh
Confidence 46899999999999999999999999999999999887543 388899999999999999999999997 5555544
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.4e-15 Score=139.83 Aligned_cols=69 Identities=55% Similarity=0.910 Sum_probs=65.5
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCch-hhHhHHhHHhhhhccCCccccccccccc
Q 015255 17 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPV-AADIFKEVTFSYNILSDPDKRRQYDTAG 85 (410)
Q Consensus 17 ~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~-a~~~f~~i~~Ay~vLsdp~kR~~YD~~g 85 (410)
...|||+||||+++|+..||++|||++|++||||++++++. |.+.|+.|++||+||+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45799999999999999999999999999999999998885 9999999999999999999999999863
No 47
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.56 E-value=3.3e-15 Score=110.69 Aligned_cols=55 Identities=58% Similarity=1.011 Sum_probs=52.0
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCC
Q 015255 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSD 74 (410)
Q Consensus 20 d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsd 74 (410)
|||+||||+++++.++||++||+|+++||||++++.+.+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999998556789999999999999986
No 48
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=8e-15 Score=136.56 Aligned_cols=71 Identities=34% Similarity=0.725 Sum_probs=65.1
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccccc
Q 015255 17 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFE 87 (410)
Q Consensus 17 ~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~ 87 (410)
..-|||+||||+++||+.|||+|||+|+++|||||+|.-.+.++.|..|++||+.|+|+..|..|..+|..
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~P 167 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNP 167 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCC
Confidence 45699999999999999999999999999999999985455678899999999999999999999999864
No 49
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=9.9e-14 Score=133.71 Aligned_cols=74 Identities=49% Similarity=0.873 Sum_probs=66.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-chhhHhHHhHHhhhhccCCccccccccccccccccc
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAND-PVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVES 91 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~ 91 (410)
..|||+||||.++|+..+|++||+++|++||||+|+.+ ..|..+|++|.+||++|+||.+|..||.+|.+++..
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~~ 76 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLKG 76 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCcccccc
Confidence 46999999999999999999999999999999998865 235558999999999999999999999999855543
No 50
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.40 E-value=1.8e-13 Score=125.49 Aligned_cols=65 Identities=28% Similarity=0.446 Sum_probs=58.4
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCCch-----hhHhHHhHHhhhhccCCccccccccc
Q 015255 19 RDPYEVLGVSRN--CTDQEIKSAYRKMALKYHPDKNANDPV-----AADIFKEVTFSYNILSDPDKRRQYDT 83 (410)
Q Consensus 19 ~d~Y~vLgv~~~--As~~eIK~aYrklal~~HPDkn~~~~~-----a~~~f~~i~~Ay~vLsdp~kR~~YD~ 83 (410)
.|||+||||++. ++..+|+++||+|++++|||+.++.+. |.+.|..|++||++|+||.+|..|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999996 788999999999999999999875543 56789999999999999999999985
No 51
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.1e-13 Score=139.46 Aligned_cols=70 Identities=56% Similarity=0.824 Sum_probs=66.0
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-chhhHhHHhHHhhhhccCCcccccccccc
Q 015255 15 KQLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAND-PVAADIFKEVTFSYNILSDPDKRRQYDTA 84 (410)
Q Consensus 15 ~~~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~ 84 (410)
.+.++|||.||||.++|+..|||+|||++|+.||||+|.++ .+|..+|++|.+||.||+||.+|..||+.
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 45689999999999999999999999999999999999988 67899999999999999999999999983
No 52
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.37 E-value=2.7e-13 Score=123.74 Aligned_cols=66 Identities=27% Similarity=0.421 Sum_probs=58.0
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCCch---hhHhHHhHHhhhhccCCcccccccccc
Q 015255 19 RDPYEVLGVSRN--CTDQEIKSAYRKMALKYHPDKNANDPV---AADIFKEVTFSYNILSDPDKRRQYDTA 84 (410)
Q Consensus 19 ~d~Y~vLgv~~~--As~~eIK~aYrklal~~HPDkn~~~~~---a~~~f~~i~~Ay~vLsdp~kR~~YD~~ 84 (410)
.|||++|||++. ++..+|+++||+|++++|||+++...+ +.+.|..|++||+||+||.+|..|+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 589999999996 789999999999999999999874322 345688999999999999999999863
No 53
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.9e-13 Score=128.67 Aligned_cols=67 Identities=42% Similarity=0.743 Sum_probs=62.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCcccccccccc
Q 015255 17 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTA 84 (410)
Q Consensus 17 ~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~ 84 (410)
+..|-|+||||.++|+..||.+|||+||++||||+++ ++++.+.|..|..||++|.|.+.|..||-.
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r-~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNR-DPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccC-CchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 5679999999999999999999999999999999998 567779999999999999999999999963
No 54
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.35 E-value=6.9e-13 Score=122.16 Aligned_cols=67 Identities=27% Similarity=0.458 Sum_probs=59.0
Q ss_pred CCCCcccccCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCCchh-----hHhHHhHHhhhhccCCccccccccc
Q 015255 17 LRRDPYEVLGVSRN--CTDQEIKSAYRKMALKYHPDKNANDPVA-----ADIFKEVTFSYNILSDPDKRRQYDT 83 (410)
Q Consensus 17 ~~~d~Y~vLgv~~~--As~~eIK~aYrklal~~HPDkn~~~~~a-----~~~f~~i~~Ay~vLsdp~kR~~YD~ 83 (410)
...|||+||||++. ++..+|+++||+|++++|||+++..+.+ .+.+..||.||++|+||.+|..|+.
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 34799999999995 6899999999999999999998866543 4456899999999999999999995
No 55
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.33 E-value=1e-12 Score=120.60 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=60.4
Q ss_pred CCCCcccccCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCCch-----hhHhHHhHHhhhhccCCccccccccc
Q 015255 17 LRRDPYEVLGVSRN--CTDQEIKSAYRKMALKYHPDKNANDPV-----AADIFKEVTFSYNILSDPDKRRQYDT 83 (410)
Q Consensus 17 ~~~d~Y~vLgv~~~--As~~eIK~aYrklal~~HPDkn~~~~~-----a~~~f~~i~~Ay~vLsdp~kR~~YD~ 83 (410)
...|||++|||++. .+..+|+++||+|+++||||++++.+. +.+.|..||.||+||+||.+|..|+.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 35799999999996 678999999999999999999876553 56789999999999999999999996
No 56
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.8e-13 Score=134.24 Aligned_cols=67 Identities=37% Similarity=0.718 Sum_probs=64.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccccccc
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQYDTAG 85 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g 85 (410)
.+|.|.+|||++++|+++||+.||++|...|||||- .|.|.+.|+.++.||++|+|+++|..||...
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~-~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNM-IPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccC-ChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 689999999999999999999999999999999998 7899999999999999999999999999743
No 57
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.13 E-value=2.6e-11 Score=118.61 Aligned_cols=59 Identities=39% Similarity=0.572 Sum_probs=52.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--C-----chhhHhHHhHHhhhhccCC
Q 015255 16 QLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAN--D-----PVAADIFKEVTFSYNILSD 74 (410)
Q Consensus 16 ~~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~--~-----~~a~~~f~~i~~Ay~vLsd 74 (410)
....|+|+||||+++||.+|||+|||+|+++||||++.+ . +.|.++|+.|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999743 2 2478999999999999985
No 58
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.12 E-value=4.1e-11 Score=102.81 Aligned_cols=53 Identities=23% Similarity=0.478 Sum_probs=47.7
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccC
Q 015255 17 LRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILS 73 (410)
Q Consensus 17 ~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLs 73 (410)
...++|+||||+++||.+|||++||+|++++|||+.. ..+.|++|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgG----s~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGG----STYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999852 3568899999999985
No 59
>PHA02624 large T antigen; Provisional
Probab=99.04 E-value=9e-11 Score=124.85 Aligned_cols=60 Identities=22% Similarity=0.392 Sum_probs=56.1
Q ss_pred CCCcccccCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCccccccc
Q 015255 18 RRDPYEVLGVSRNC--TDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDPDKRRQY 81 (410)
Q Consensus 18 ~~d~Y~vLgv~~~A--s~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp~kR~~Y 81 (410)
..++|++|||+++| +..+||+|||++|++||||++. +.++|+.|+.||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----deekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----DEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----cHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 9999999999999999999964 357999999999999999999999
No 60
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.90 E-value=4.9e-10 Score=114.04 Aligned_cols=69 Identities=33% Similarity=0.723 Sum_probs=62.9
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---C--chhhHhHHhHHhhhhccCCccccccccccccc
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAN---D--PVAADIFKEVTFSYNILSDPDKRRQYDTAGFE 87 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~---~--~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~ 87 (410)
-|+|+|||++.++++.+||++||+|+.+|||||.++ + .+-.+.++.|++||..|+|...|..|=.+|..
T Consensus 98 fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 98 FDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred CChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 599999999999999999999999999999999875 1 24678899999999999999999999999864
No 61
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.86 E-value=1.9e-09 Score=99.08 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=57.8
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHhcCCCCCCCCch-----hhHhHHhHHhhhhccCCccccccccc
Q 015255 19 RDPYEVLGVSRN--CTDQEIKSAYRKMALKYHPDKNANDPV-----AADIFKEVTFSYNILSDPDKRRQYDT 83 (410)
Q Consensus 19 ~d~Y~vLgv~~~--As~~eIK~aYrklal~~HPDkn~~~~~-----a~~~f~~i~~Ay~vLsdp~kR~~YD~ 83 (410)
.|||++||+++. .+...+++.|++|.+.+|||+....+. |.+....||+||.+|+||-+|+.|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 599999999995 899999999999999999999875542 55678899999999999999999954
No 62
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.3e-09 Score=100.66 Aligned_cols=67 Identities=34% Similarity=0.609 Sum_probs=60.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC-chhhHhHHhHHhhhhccCCcccccccc
Q 015255 16 QLRRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAND-PVAADIFKEVTFSYNILSDPDKRRQYD 82 (410)
Q Consensus 16 ~~~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~-~~a~~~f~~i~~Ay~vLsdp~kR~~YD 82 (410)
...-|+|+||.|.|..+.++||+.||+|++..||||||+| +.|...|--|..||.+|-|+.-|..-+
T Consensus 50 yfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 50 YFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred ccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 3567999999999999999999999999999999999988 669999999999999999998665443
No 63
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.5e-09 Score=102.93 Aligned_cols=94 Identities=27% Similarity=0.459 Sum_probs=72.0
Q ss_pred CCCCcccccCCCC---CCCHHHHHHHHHHHHHhcCCCCC--CCCchhhHhHHhHHhhhhccCCccccccccccccccccc
Q 015255 17 LRRDPYEVLGVSR---NCTDQEIKSAYRKMALKYHPDKN--ANDPVAADIFKEVTFSYNILSDPDKRRQYDTAGFEAVES 91 (410)
Q Consensus 17 ~~~d~Y~vLgv~~---~As~~eIK~aYrklal~~HPDkn--~~~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~~~~~~ 91 (410)
...|+|.+||++. .|++.+|.+|.++.+.+||||+. .++....+.|+.|+.||+||+|+.+|.+||+....+...
T Consensus 41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~advp 120 (379)
T COG5269 41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADVP 120 (379)
T ss_pred hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCCC
Confidence 4579999999997 78999999999999999999996 344567889999999999999999999999965543221
Q ss_pred cchhhhhccccchhHHHHHHHHhc
Q 015255 92 ESQELELDLSSLGAVNTMFAALFS 115 (410)
Q Consensus 92 ~~~~~~~d~s~~g~~~~iF~~fFg 115 (410)
.+. ...-..+.++|...|.
T Consensus 121 pp~-----~~t~~~Ffe~w~pvFe 139 (379)
T COG5269 121 PPR-----IYTPDEFFEVWEPVFE 139 (379)
T ss_pred Ccc-----CCCchhHHHHHHHHHH
Confidence 110 0112345566777764
No 64
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.79 E-value=4.7e-09 Score=95.16 Aligned_cols=54 Identities=28% Similarity=0.445 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCc-----hhhHhHHhHHhhhhccCCcccccccccc
Q 015255 31 CTDQEIKSAYRKMALKYHPDKNANDP-----VAADIFKEVTFSYNILSDPDKRRQYDTA 84 (410)
Q Consensus 31 As~~eIK~aYrklal~~HPDkn~~~~-----~a~~~f~~i~~Ay~vLsdp~kR~~YD~~ 84 (410)
.+..+|+++||+|+++||||+.++.. .+...|+.|++||++|+||.+|..|+..
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 46789999999999999999976442 2668899999999999999999999974
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3.6e-06 Score=93.09 Aligned_cols=53 Identities=36% Similarity=0.567 Sum_probs=45.9
Q ss_pred CCCcccccCCCCC----CCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccC
Q 015255 18 RRDPYEVLGVSRN----CTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILS 73 (410)
Q Consensus 18 ~~d~Y~vLgv~~~----As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLs 73 (410)
..+-|+||.|+-+ -..+.||++|++||.+||||||| +..++|..+++||+.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP---EGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP---EGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc---hHHHHHHHHHHHHHHHH
Confidence 3477999999852 23478999999999999999996 67899999999999998
No 66
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.01 E-value=1.5e-05 Score=86.90 Aligned_cols=65 Identities=15% Similarity=0.068 Sum_probs=51.0
Q ss_pred EEEeeeeeecCcccccccccCCCCccccCCC----CCCCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCch
Q 015255 219 YFLGFPVYRLDQTATSMAAAKDPDAAFFKKL----DGFQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFT 291 (410)
Q Consensus 219 ~~L~~pv~~~~~g~~~~~~~kd~~~~~F~~l----~g~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~ 291 (410)
..|.|+| .+| +++|.++.|.+. ++. +||| ++|+...| +|.|.|+||++.++|+ .+||+|+...
T Consensus 697 ktLeVkI---PpG------VkdGqkIRf~GeGDegpgg-~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~EALLGgtIe 766 (871)
T TIGR03835 697 ITLEIQL---PIT------SQLNISAIFKGFGHDFGNG-CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLVAYNGGIID 766 (871)
T ss_pred EEEEEec---CCC------CCCCCEEEeccccCCCCCC-CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHHHhcCCEEE
Confidence 3556655 667 677777756532 233 4999 99999999 9999999999999999 9999998776
Q ss_pred hh
Q 015255 292 EE 293 (410)
Q Consensus 292 ~~ 293 (410)
..
T Consensus 767 Ip 768 (871)
T TIGR03835 767 VF 768 (871)
T ss_pred ee
Confidence 54
No 67
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.8e-05 Score=75.16 Aligned_cols=54 Identities=22% Similarity=0.528 Sum_probs=48.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhh-ccC
Q 015255 19 RDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYN-ILS 73 (410)
Q Consensus 19 ~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~-vLs 73 (410)
..+|.+|||..+|+.++++.||..||+++|||... +......|..|.+||. ||+
T Consensus 47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs-~~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGS-EEADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCC-ccccHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999876 3456788999999999 776
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00042 Score=58.47 Aligned_cols=50 Identities=26% Similarity=0.473 Sum_probs=42.4
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccCCc
Q 015255 22 YEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILSDP 75 (410)
Q Consensus 22 Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLsdp 75 (410)
-.||||.++++.+.||.|+|+..+..|||+-. .| -.-..|++|+++|...
T Consensus 59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GG-SP---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGG-SP---YLASKINEAKDLLEGT 108 (112)
T ss_pred HHHhCCCccccHHHHHHHHHHHHHcCCCcCCC-CH---HHHHHHHHHHHHHhcc
Confidence 35999999999999999999999999999875 33 3445699999999754
No 69
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0034 Score=56.59 Aligned_cols=66 Identities=24% Similarity=0.449 Sum_probs=53.7
Q ss_pred CCCcccccCCCC--CCCHHHHHHHHHHHHHhcCCCCCCC----Cc-hhhHhHHhHHhhhhccCCccccccccc
Q 015255 18 RRDPYEVLGVSR--NCTDQEIKSAYRKMALKYHPDKNAN----DP-VAADIFKEVTFSYNILSDPDKRRQYDT 83 (410)
Q Consensus 18 ~~d~Y~vLgv~~--~As~~eIK~aYrklal~~HPDkn~~----~~-~a~~~f~~i~~Ay~vLsdp~kR~~YD~ 83 (410)
..+||.++|... ...++-+..-|.-...+.|||+... ++ .|.+...++++||.+|.||-+|+.|=.
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 468999998765 4556667768999999999999432 22 478889999999999999999999964
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.0073 Score=55.59 Aligned_cols=55 Identities=35% Similarity=0.517 Sum_probs=47.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCC--Cc-----hhhHhHHhHHhhhhcc
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNAN--DP-----VAADIFKEVTFSYNIL 72 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~--~~-----~a~~~f~~i~~Ay~vL 72 (410)
+.+.|.+||+...+...+|+++|+++...+|||+... .+ .+.++++.|++||+-+
T Consensus 112 ~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 112 REDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred chhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3789999999999999999999999999999999432 22 3788899999999743
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.77 E-value=0.027 Score=59.39 Aligned_cols=47 Identities=30% Similarity=0.480 Sum_probs=35.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCCCCCCch-------hhHhHHhHHhhhhcc
Q 015255 26 GVSRNCTDQEIKSAYRKMALKYHPDKNANDPV-------AADIFKEVTFSYNIL 72 (410)
Q Consensus 26 gv~~~As~~eIK~aYrklal~~HPDkn~~~~~-------a~~~f~~i~~Ay~vL 72 (410)
++..=.+...||+||||..|..||||.++.+. |.+.|-.+.+||+..
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f 448 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF 448 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence 34445689999999999999999999876532 445566667776643
No 72
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.40 E-value=0.027 Score=51.85 Aligned_cols=67 Identities=30% Similarity=0.429 Sum_probs=52.5
Q ss_pred CcccccCCCCCCC--HHHHHHHHHHHHHhcCCCCCCCCch-----hhHhHHhHHhhhhccCCcccccccccccc
Q 015255 20 DPYEVLGVSRNCT--DQEIKSAYRKMALKYHPDKNANDPV-----AADIFKEVTFSYNILSDPDKRRQYDTAGF 86 (410)
Q Consensus 20 d~Y~vLgv~~~As--~~eIK~aYrklal~~HPDkn~~~~~-----a~~~f~~i~~Ay~vLsdp~kR~~YD~~g~ 86 (410)
|+...+|.++.+. .+-++..|+.+.+.||||+....+. +...+..++.||.+|.||-+|..|=..-.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~ 75 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA 75 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence 4555666666554 3568899999999999999765443 44679999999999999999999976433
No 73
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=91.16 E-value=0.27 Score=37.97 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=28.0
Q ss_pred cccccccccccccceeEeeeeccCCcEEEEeccCCCcceeeeeeccCCCcce-eeecccccc
Q 015255 149 ITRKVEKQCAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDREGTGGLS-LALQEDCTK 209 (410)
Q Consensus 149 vC~kcegq~a~~ygv~i~~eqi~~G~v~qvqS~c~sKck~~~f~~~g~Gg~~-~~~~eD~~k 209 (410)
.|..|.++ |..+...+ .++++++++++|.. |. |.|.++ ...|..|.+
T Consensus 17 ~C~~C~G~-----G~~~~~~~-~~~~~~~~~~~C~~-C~-------G~G~~i~~~~C~~C~G 64 (66)
T PF00684_consen 17 TCPQCNGS-----GQVTRRQQ-TPGGVFQMQQTCPK-CG-------GTGKIIEKDPCKTCKG 64 (66)
T ss_dssp E-TTSSSS-----SEEEEEEE-SSSTTEEEEEE-TT-TS-------SSSEE-TSSB-SSSTT
T ss_pred CCcCCCCe-----eEEEEEEe-CCCeEEEEEEECCC-Cc-------ceeeEECCCCCCCCCC
Confidence 36556544 34444445 77788888999977 99 888654 444554444
No 74
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=84.11 E-value=1.3 Score=38.92 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=34.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhccC
Q 015255 20 DPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNILS 73 (410)
Q Consensus 20 d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vLs 73 (410)
.-..||||++.++.++|.+.|.+|-...+|++.. ..-.-..|..|.+.|.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG----SfYLQSKV~rAKErl~ 108 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGG----SFYLQSKVFRAKERLE 108 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCC----CHHHHHHHHHHHHHHH
Confidence 3357999999999999999999999999999764 2333455777777665
No 75
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.73 E-value=0.29 Score=49.47 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=33.9
Q ss_pred CCccce-EEEeccce-eEEEeCCceeEeeeee-EEEeecCCchh
Q 015255 252 FQPCEI-TELKAGTH-VFAVYGDNFFKSASYM-IEALCAAPFTE 292 (410)
Q Consensus 252 ~~~~d~-~~l~~~~H-~F~r~Gdnl~~~~~is-~eaL~g~~~~~ 292 (410)
-.|||+ +.+..-.| .|+|.|+++.+++.++ ..+|.|+....
T Consensus 229 ~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~ 272 (336)
T KOG0713|consen 229 GVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEI 272 (336)
T ss_pred cccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHh
Confidence 457799 89999999 9999999999999999 65677765433
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=76.24 E-value=1.9 Score=43.49 Aligned_cols=56 Identities=34% Similarity=0.523 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCCCC----CchhhHhHHhHHhhhhccCCccccccccccc
Q 015255 30 NCTDQEIKSAYRKMALKYHPDKNAN----DPVAADIFKEVTFSYNILSDPDKRRQYDTAG 85 (410)
Q Consensus 30 ~As~~eIK~aYrklal~~HPDkn~~----~~~a~~~f~~i~~Ay~vLsdp~kR~~YD~~g 85 (410)
-++..+|..+|+..++..||++-.. .....+.|++|.+||.||.+..+|..+|..-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 3678899999999999999998741 1134567999999999999977778888754
No 77
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=75.33 E-value=2.4 Score=39.75 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=29.3
Q ss_pred eccCCCcceeeeeeccCCCccee--eeccccccCCceeeeceEEEeeeeeecCcc
Q 015255 179 QSSDKSKFKLLYFDREGTGGLSL--ALQEDCTKTGKVTSAGMYFLGFPVYRLDQT 231 (410)
Q Consensus 179 qS~c~sKck~~~f~~~g~Gg~~~--~~~eD~~k~gkvt~~~~~~L~~pv~~~~~g 231 (410)
+.+|+. |. |.|.++. ..|.+|.|+|++.... -+.+.+++++.|
T Consensus 99 ~~~C~~-C~-------G~G~~i~~~~~C~~C~G~G~v~~~~--~~~~k~~g~~~g 143 (186)
T TIGR02642 99 SCKCPR-CR-------GTGLIQRRQRECDTCAGTGRFRPTV--EDLLKSFGVDSG 143 (186)
T ss_pred CCcCCC-CC-------CeeEEecCCCCCCCCCCccEEeeeE--EEEEEeeeccCC
Confidence 446755 88 8875444 4688899999887665 455555676666
No 78
>PF13446 RPT: A repeated domain in UCH-protein
Probab=70.37 E-value=6.7 Score=29.62 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=23.8
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHH
Q 015255 20 DPYEVLGVSRNCTDQEIKSAYRKMAL 45 (410)
Q Consensus 20 d~Y~vLgv~~~As~~eIK~aYrklal 45 (410)
+-|++|||+++.+++.|-.+|+....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999877
No 79
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=68.49 E-value=22 Score=29.22 Aligned_cols=63 Identities=10% Similarity=0.202 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 356 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~~ 356 (410)
.++|-+-|..-..+-+-|.+++.-|..+...|.++|+-+++-+.+-++|+..-+.++...+..
T Consensus 11 LnkL~npEl~~sErTeaLqqlr~~~~sf~sEy~dlT~~~eKl~aek~DL~vsNskLFrQ~~lt 73 (97)
T PF11418_consen 11 LNKLGNPELTESERTEALQQLRESYTSFHSEYEDLTEALEKLTAEKEDLIVSNSKLFRQHGLT 73 (97)
T ss_dssp HHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhCCC
Confidence 677778888888888999999999999999999999999999999999999999999776654
No 80
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=65.56 E-value=8.6 Score=36.23 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCCCchhhHhHHhHHhhhhcc
Q 015255 28 SRNCTDQEIKSAYRKMALKYHPDKNANDPVAADIFKEVTFSYNIL 72 (410)
Q Consensus 28 ~~~As~~eIK~aYrklal~~HPDkn~~~~~a~~~f~~i~~Ay~vL 72 (410)
+++||.+||..|+.++..+|--| .+.-..|..||+.+
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~I 37 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAI 37 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHH
Confidence 57999999999999999998433 23455688999865
No 81
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=61.08 E-value=11 Score=32.34 Aligned_cols=48 Identities=23% Similarity=0.359 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCCCchh----hHhHHhHHhhhhccCCcc
Q 015255 29 RNCTDQEIKSAYRKMALKYHPDKNANDPVA----ADIFKEVTFSYNILSDPD 76 (410)
Q Consensus 29 ~~As~~eIK~aYrklal~~HPDkn~~~~~a----~~~f~~i~~Ay~vLsdp~ 76 (410)
+..+..+++.|.|.+-++.|||.....|++ .+-++.++.-.+.|..+.
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 456778999999999999999987766653 344788887777776553
No 82
>COG1422 Predicted membrane protein [Function unknown]
Probab=59.08 E-value=20 Score=33.92 Aligned_cols=39 Identities=10% Similarity=0.228 Sum_probs=30.8
Q ss_pred HHHhhHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 015255 303 EILSKRAELSKFESEYREVLAQ-FTEMTSRYAQEMQAIDE 341 (410)
Q Consensus 303 ~~~~k~~e~~~~~~ey~~~~~~-~~~~~~~~~~~~~~~~~ 341 (410)
.+.+.++++..||.||+||+++ =.++.+|++++..++-+
T Consensus 73 km~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~ 112 (201)
T COG1422 73 KMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMD 112 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4667789999999999999874 56778888888766643
No 83
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.92 E-value=45 Score=24.01 Aligned_cols=37 Identities=16% Similarity=0.392 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 313 KFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEI 349 (410)
Q Consensus 313 ~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~ 349 (410)
++|.+|...++.|+.+.+.|.....+...|.++-...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999988888888887765543
No 84
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=56.61 E-value=49 Score=31.57 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 297 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQR 346 (410)
Q Consensus 297 ~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r 346 (410)
|..+..++...=.+|.....+=++|+..|..++++-..-.-+|++||...
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK 83 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRK 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444444444455555556667788888888888888888999999764
No 85
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=56.02 E-value=5.8 Score=24.12 Aligned_cols=13 Identities=46% Similarity=0.777 Sum_probs=9.3
Q ss_pred Cceeeeccccccc
Q 015255 395 KKWFNIHLKADKR 407 (410)
Q Consensus 395 ~~~~~~~~~~~~~ 407 (410)
.|||||.-|.-+.
T Consensus 10 skwfnidnkivdh 22 (24)
T PF08053_consen 10 SKWFNIDNKIVDH 22 (24)
T ss_pred eeeEeccCeeccc
Confidence 5899998765443
No 86
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=55.01 E-value=1.3e+02 Score=28.92 Aligned_cols=111 Identities=15% Similarity=0.231 Sum_probs=76.4
Q ss_pred cCCCCCCCccceEEEeccceeEEEeCCceeEeeeeeEEE--eecCCchh-----hhhhHHHHHHHHHhhHHHHHhhHHHH
Q 015255 246 FKKLDGFQPCEITELKAGTHVFAVYGDNFFKSASYMIEA--LCAAPFTE-----EKENLRAVEAEILSKRAELSKFESEY 318 (410)
Q Consensus 246 F~~l~g~~~~d~~~l~~~~H~F~r~Gdnl~~~~~is~ea--L~g~~~~~-----~~~~~~~~e~~~~~k~~e~~~~~~ey 318 (410)
+...+...|.+...+....|++..++-|+|..-.+.++. |.+...+. ..+.|-+.=+.++.+.+++..+....
T Consensus 62 ie~~~Rg~~rKYY~Is~~~rleV~lsp~~f~~~~~~~~~~~l~~~r~~~~~~~~s~~~~~~l~srl~~~~~~~e~l~~~~ 141 (217)
T COG1777 62 IEKIPRGRPRKYYMISRNLRLEVTLSPNFFGAERFDLEEDDLESERSEVSKLFKSPEGISELISRLLEINREIEELSRAQ 141 (217)
T ss_pred ccccccCCCcceeeccCCeEEEEEecCcccceeccCccccchhhhhcchhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566666777777778888888888776666433 33332222 24446666677888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015255 319 REVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 356 (410)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~~ 356 (410)
++..+++.++..|.+.+-......+.+|.-.+.=.++.
T Consensus 142 ~~L~~~~~el~~rik~~ied~~~~~~~~~vl~~l~~n~ 179 (217)
T COG1777 142 TELQKQLNELMDRIKEEIEDKDGDMTERIVLEYLLKNG 179 (217)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhh
Confidence 99999999999999888777766666665555444433
No 87
>PRK09806 tryptophanase leader peptide; Provisional
Probab=51.58 E-value=7.7 Score=24.00 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=10.5
Q ss_pred CceeeecccccccCC
Q 015255 395 KKWFNIHLKADKRNK 409 (410)
Q Consensus 395 ~~~~~~~~~~~~~~~ 409 (410)
.|||||.-|.-+..|
T Consensus 10 skwfnidnkivdhrp 24 (26)
T PRK09806 10 SKWFNIDNKIVDHRP 24 (26)
T ss_pred eeEEeccCeeeccCC
Confidence 589999877654443
No 88
>PHA00489 scaffolding protein
Probab=51.29 E-value=49 Score=27.41 Aligned_cols=58 Identities=12% Similarity=0.241 Sum_probs=51.5
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHA 351 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~ 351 (410)
.++|-+-|..-..+-+-|.+++.-|......|+++|.-+++.+.+-++|+..-+.++.
T Consensus 12 LnkL~dpEl~~sErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~DLivsNskLFr 69 (101)
T PHA00489 12 LNKLGDPELTESERTEALQQLRESYGSFHSEYEELTEALEKLTAEKEDLIVSNSKLFR 69 (101)
T ss_pred HHHcCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 6677778888888888999999999999999999999999888889999999888873
No 89
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=49.93 E-value=1.1e+02 Score=27.45 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHAS 352 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~ 352 (410)
.+..+..|.++..-.+.|..++.|+....+.++.....+.+....+..+-++|++--..
T Consensus 26 l~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 26 LDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677789999999999999999999999999999999999999999988887765443
No 90
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=49.12 E-value=73 Score=26.73 Aligned_cols=56 Identities=14% Similarity=0.316 Sum_probs=32.0
Q ss_pred EeccceeEEEeCCceeEeeeee-EEEeecCCchhh--hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHH
Q 015255 260 LKAGTHVFAVYGDNFFKSASYM-IEALCAAPFTEE--KENLRAVEAEILSKRAELSKFESEYREVLAQ 324 (410)
Q Consensus 260 l~~~~H~F~r~Gdnl~~~~~is-~eaL~g~~~~~~--~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~ 324 (410)
|....++|.-=|.|+|..+++. + .+ ..+|..++.++..-.+++...+..+..+...
T Consensus 55 i~~~~~vlV~lG~~~~vE~s~~eA---------~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 113 (120)
T PF02996_consen 55 IPDTDKVLVSLGAGYYVEMSLEEA---------IEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQT 113 (120)
T ss_dssp -SSTTEEEEEEETTEEEEEEHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred eCCCCEEEEEeeCCeEEEecHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557777889999888876 3 11 3445555555555555555555554444433
No 91
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=47.36 E-value=32 Score=29.59 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=17.8
Q ss_pred EEEEeccCCCcceeeeeeccCCCcceeeeccccccCC
Q 015255 175 VCRVQSSDKSKFKLLYFDREGTGGLSLALQEDCTKTG 211 (410)
Q Consensus 175 v~qvqS~c~sKck~~~f~~~g~Gg~~~~~~eD~~k~g 211 (410)
.++++.+|.. |+ |.|. ..|..|.+.|
T Consensus 71 ~~q~~~~C~~-C~-------G~Gk---~~C~~C~G~G 96 (111)
T PLN03165 71 GEKEVSKCIN-CD-------GAGS---LTCTTCQGSG 96 (111)
T ss_pred cEEEEEECCC-CC-------Ccce---eeCCCCCCCE
Confidence 3567778977 99 8884 3477666654
No 92
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=46.89 E-value=1.8e+02 Score=25.17 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=42.6
Q ss_pred CCCCccce-EEEec-cceeEEEeCCceeEeeeeeEEEeecCCchhhhhhHHHHHHHHHhhHHHHHhhH--HHHHHHHHHH
Q 015255 250 DGFQPCEI-TELKA-GTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKFE--SEYREVLAQF 325 (410)
Q Consensus 250 ~g~~~~d~-~~l~~-~~H~F~r~Gdnl~~~~~is~eaL~g~~~~~~~~~~~~~e~~~~~k~~e~~~~~--~ey~~~~~~~ 325 (410)
..+.||-+ +.... ..|.|.+.|.=+...-+ .+..|+-.-...+.-.+..++..+..-++.|++.+ .|+.+|+.+.
T Consensus 41 ~~L~~G~v~i~~~~~~~~~~~v~gG~~~v~~~-~v~Il~~~a~~~~~id~~~a~~~~~~ae~~l~~~~~~~~~~~a~~~l 119 (130)
T TIGR01216 41 TALKPGVVRIRKLGDDWEHIAVSGGFAEVQPD-KVTILADGAVFADDIDEAEAEKALEAAEKLLESAEDDKDLAEALLKL 119 (130)
T ss_pred eEecceEEEEEECCCCEEEEEEcCcEEEEECC-EEEEEEeEEEEcccCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Confidence 44666777 43323 34566665554444333 23333333222222234445555555555554433 5777787777
Q ss_pred HHHHHHHH
Q 015255 326 TEMTSRYA 333 (410)
Q Consensus 326 ~~~~~~~~ 333 (410)
..+.+|+.
T Consensus 120 ~~a~~rl~ 127 (130)
T TIGR01216 120 KKARAQLE 127 (130)
T ss_pred HHHHHHHH
Confidence 77777764
No 93
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=46.11 E-value=1.2e+02 Score=28.87 Aligned_cols=58 Identities=12% Similarity=0.267 Sum_probs=49.0
Q ss_pred hHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015255 296 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASY 353 (410)
Q Consensus 296 ~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~ 353 (410)
.+..++..+.....++...+.+|..+...+.....+|.+++..+-+.+-.=|+-.-.|
T Consensus 151 e~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~ 208 (236)
T cd07651 151 ELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQF 208 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999999999999999988877776655544443
No 94
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=45.88 E-value=2.2e+02 Score=25.49 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=46.0
Q ss_pred CCCCCccce-EEEeccceeEEEeCCceeEeeeee-EEEeecCCchhhhhhHHHHHHHHHhhHHHHHhhH---HHHHHHHH
Q 015255 249 LDGFQPCEI-TELKAGTHVFAVYGDNFFKSASYM-IEALCAAPFTEEKENLRAVEAEILSKRAELSKFE---SEYREVLA 323 (410)
Q Consensus 249 l~g~~~~d~-~~l~~~~H~F~r~Gdnl~~~~~is-~eaL~g~~~~~~~~~~~~~e~~~~~k~~e~~~~~---~ey~~~~~ 323 (410)
+..+.||.+ +......+.|.+.|.=+. +.=+ +..|+-.--..+.-.+..+|..+..-++.|.+.+ .++..|..
T Consensus 44 it~L~~G~l~i~~~~~~~~~~v~gGf~e--V~~n~v~Ilad~ae~~~eID~~~ae~a~~~Ae~~L~~~~~~~~~~~~a~~ 121 (145)
T PRK13452 44 LSTLPAGVVNVRKDQHTDVLYVSGGIVE--VTPTRVTIMVDDMERAENLNQAEAEKARARAKEVLKNPDASKLDIEAANK 121 (145)
T ss_pred EeeecceEEEEEECCcEEEEEEcceEEE--EECCEEEEEeCeeeccccCCHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 345677777 433333356777664333 2222 4455443333333346666666666666666543 35667777
Q ss_pred HHHHHHHHHH
Q 015255 324 QFTEMTSRYA 333 (410)
Q Consensus 324 ~~~~~~~~~~ 333 (410)
+...+.+|+.
T Consensus 122 ~L~rA~~Rl~ 131 (145)
T PRK13452 122 RLKEADARLK 131 (145)
T ss_pred HHHHHHHHHH
Confidence 7777777765
No 95
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.70 E-value=1.4e+02 Score=28.52 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=29.1
Q ss_pred Cccce--EEEeccceeEEEeC--CceeEeeeee--EEEeecCCc
Q 015255 253 QPCEI--TELKAGTHVFAVYG--DNFFKSASYM--IEALCAAPF 290 (410)
Q Consensus 253 ~~~d~--~~l~~~~H~F~r~G--dnl~~~~~is--~eaL~g~~~ 290 (410)
..||+ ..+.+|+|.+|.+- ++||..++.- ++.=.|+..
T Consensus 88 s~G~ftFta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG~~a 131 (215)
T KOG1690|consen 88 SEGDFTFTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVGDHA 131 (215)
T ss_pred CCCceEEEccCCCceEEEEecccchhhccceEEEEEEEeeCchh
Confidence 45688 88999999888763 4899998887 666666543
No 96
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=45.18 E-value=1.6e+02 Score=30.94 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=49.1
Q ss_pred ecCCchhhhhhHHHHHHHHHhhHHHHHhhHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015255 286 CAAPFTEEKENLRAVEAEILSKRAELSKFESEYREV-------------LAQFTEMTSRYAQEMQAIDELLKQRNEIHAS 352 (410)
Q Consensus 286 ~g~~~~~~~~~~~~~e~~~~~k~~e~~~~~~ey~~~-------------~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~ 352 (410)
.|...+.-.+++.+++.++...+++|.+++...... ++.+..+...+.+..+.+.+|..+..++..+
T Consensus 325 vg~~~~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~ 404 (451)
T PF03961_consen 325 VGVDRPELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEE 404 (451)
T ss_pred EecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544446667777777777777777777764333 3466777777777777788888888777777
Q ss_pred hccC
Q 015255 353 YTTA 356 (410)
Q Consensus 353 ~~~~ 356 (410)
+...
T Consensus 405 l~~~ 408 (451)
T PF03961_consen 405 LERS 408 (451)
T ss_pred HHhh
Confidence 6655
No 97
>PRK14158 heat shock protein GrpE; Provisional
Probab=44.36 E-value=1.3e+02 Score=28.36 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=47.5
Q ss_pred EEEeecCCc---hhh-hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 282 IEALCAAPF---TEE-KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 340 (410)
Q Consensus 282 ~eaL~g~~~---~~~-~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~ 340 (410)
.++-.|-+. +.+ .+.+..++..|...+.++..++..|.-+++-|+-.-.|..+|.+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~ 85 (194)
T PRK14158 23 AEAAQGKPEAAQPVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELL 85 (194)
T ss_pred ccccCCCCCcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444 223 66788999999999999999999999999999999999998877654
No 98
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=43.62 E-value=90 Score=26.74 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=38.6
Q ss_pred EeccceeEEEeCCceeEeeeee-EEEeecCCchhhhhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHH
Q 015255 260 LKAGTHVFAVYGDNFFKSASYM-IEALCAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTE 327 (410)
Q Consensus 260 l~~~~H~F~r~Gdnl~~~~~is-~eaL~g~~~~~~~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~ 327 (410)
|...++++..-|.|+|..+++. +.- .-..+|..++..+....+++.+.+.++..+.....+
T Consensus 65 i~~~~~v~v~iG~g~~vE~~~~eA~~-------~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 65 VKDTDKVLVDLGTGYYVEKDLEEAIE-------FLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred eCCCCEEEEEcCCCEEEEecHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888899999988887 421 114556666666666666666666666665554443
No 99
>PRK14154 heat shock protein GrpE; Provisional
Probab=42.38 E-value=1.2e+02 Score=29.05 Aligned_cols=44 Identities=14% Similarity=0.344 Sum_probs=34.5
Q ss_pred hHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 296 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 296 ~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
.+..++++|...++++..++..|.-+++-|+-.-.|..++.+.+
T Consensus 53 ~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~ 96 (208)
T PRK14154 53 SREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADI 96 (208)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888888888888888888888888888887654
No 100
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=40.76 E-value=38 Score=28.71 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=14.0
Q ss_pred eccceeEEEeCCceeEeeeee
Q 015255 261 KAGTHVFAVYGDNFFKSASYM 281 (410)
Q Consensus 261 ~~~~H~F~r~Gdnl~~~~~is 281 (410)
....+++.--|.|+|..+++.
T Consensus 66 ~~~~~v~v~iG~~~~ve~~~~ 86 (129)
T cd00890 66 KDDDKVLVDLGTGVYVEKSLE 86 (129)
T ss_pred CCCCEEEEEecCCEEEEecHH
Confidence 344556666677888777766
No 101
>PRK14139 heat shock protein GrpE; Provisional
Probab=40.73 E-value=1.4e+02 Score=27.91 Aligned_cols=47 Identities=15% Similarity=0.276 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 340 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~ 340 (410)
...+..++++|...+.++..++..|.-+++.|+-...|..+|.+.+.
T Consensus 31 ~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~ 77 (185)
T PRK14139 31 EDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAH 77 (185)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788889999999999999999999999999999998877653
No 102
>PRK14143 heat shock protein GrpE; Provisional
Probab=39.76 E-value=1.5e+02 Score=28.92 Aligned_cols=47 Identities=26% Similarity=0.450 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 340 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~ 340 (410)
...+..++++|...+.++..++..|+-+++-|+-.-.|..++.+.+.
T Consensus 66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~ 112 (238)
T PRK14143 66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLR 112 (238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999988876543
No 103
>PRK10884 SH3 domain-containing protein; Provisional
Probab=39.48 E-value=3.4e+02 Score=25.76 Aligned_cols=57 Identities=16% Similarity=0.322 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASY 353 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~ 353 (410)
...|..+|.++..-+++|.....++.+..+ ++..++++-.+.+.+|-++..++-.++
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~~~~~---~l~~~~~~~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWNQRTA---EMQQKVAQSDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777776666543332 233333333444444444444443333
No 104
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=39.02 E-value=1.4e+02 Score=22.21 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=23.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 015255 309 AELSKFESEYREVLAQFTEMTSRYAQE 335 (410)
Q Consensus 309 ~e~~~~~~ey~~~~~~~~~~~~~~~~~ 335 (410)
-||++|=.-|-.++.+|++-..|--+|
T Consensus 9 pELDqFMeaYc~~L~kykeeL~~p~~E 35 (52)
T PF03791_consen 9 PELDQFMEAYCDMLVKYKEELQRPFQE 35 (52)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999988887664
No 105
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=38.60 E-value=1.8e+02 Score=28.53 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015255 295 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 354 (410)
Q Consensus 295 ~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~ 354 (410)
-.|+..-.++++-+-+|+.--.-+||.++..+|++.-..+.+..+++|.+++.++--+.+
T Consensus 16 L~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVt 75 (277)
T PF15030_consen 16 LRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVT 75 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccc
Confidence 347788999999999999999999999999999999999999999999999998876554
No 106
>PHA03161 hypothetical protein; Provisional
Probab=38.29 E-value=1.2e+02 Score=27.44 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELL 343 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll 343 (410)
...|..|+..|..|+.|+..+..==+..+...++++.|+.+..+++..=|
T Consensus 60 ~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLkeel~~EL 109 (150)
T PHA03161 60 EGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELKEDIHFEI 109 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577799999999999999988666667777777777666655544433
No 107
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.88 E-value=1.6e+02 Score=28.39 Aligned_cols=59 Identities=12% Similarity=0.194 Sum_probs=43.3
Q ss_pred hHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015255 296 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 354 (410)
Q Consensus 296 ~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~ 354 (410)
+.....+++...++|+.+-++++..+..+.+++....+.-..+.|-||.+=+...++..
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 35556667777777777777788888888888887777788888888877555555544
No 108
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.76 E-value=2e+02 Score=28.53 Aligned_cols=59 Identities=15% Similarity=0.326 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTS---RYAQEMQAIDELLKQRNEIHAS 352 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~---~~~~~~~~~~~ll~~r~~~~~~ 352 (410)
..+..+++.+|...=+++.....+=.+..+++++.-. +|+++-.++++-|.+|++++..
T Consensus 44 ~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 44 QKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777777777777877777766 5555556666678999998865
No 109
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=37.67 E-value=2.1e+02 Score=25.96 Aligned_cols=52 Identities=27% Similarity=0.368 Sum_probs=38.6
Q ss_pred hHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 296 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 347 (410)
Q Consensus 296 ~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~ 347 (410)
+|-.|-.+|.--..--.+=+.||.+|+..|.+....=.+....+-+|+.+=+
T Consensus 92 kID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE 143 (159)
T PF04949_consen 92 KIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESE 143 (159)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666676666777778899999999999988777777666667766543
No 110
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.51 E-value=1.3e+02 Score=35.10 Aligned_cols=57 Identities=23% Similarity=0.394 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015255 296 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHAS 352 (410)
Q Consensus 296 ~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~ 352 (410)
.|.++|+++..+=+++..+...-.+.+.+-++.-+.++..+++.++|+.+|.+++-+
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWRE 475 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWRE 475 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777778888888888888888888888888888888888888777643
No 111
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=37.41 E-value=1.9e+02 Score=28.10 Aligned_cols=46 Identities=26% Similarity=0.471 Sum_probs=21.1
Q ss_pred hHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015255 307 KRAELSKFE--SEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHAS 352 (410)
Q Consensus 307 k~~e~~~~~--~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~ 352 (410)
-|+=|.+++ +||-+.+..|++.-.|+.+...+-.+||++=++.-..
T Consensus 117 vRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e 164 (290)
T COG4026 117 VRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAE 164 (290)
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 4444444444444444444444444444444443333
No 112
>PRK14148 heat shock protein GrpE; Provisional
Probab=37.18 E-value=1.8e+02 Score=27.40 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 295 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 340 (410)
Q Consensus 295 ~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~ 340 (410)
..+..++..|...++++..++..|.-+++-|+-...|..++...+.
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~ 85 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNAR 85 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477788889999999999999999999999999999998876543
No 113
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=36.79 E-value=1.9e+02 Score=28.10 Aligned_cols=54 Identities=17% Similarity=0.412 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 295 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNE 348 (410)
Q Consensus 295 ~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~ 348 (410)
.+|..++..+.....++.+-+.+|..++..+.+...+|.+++..+=+.+-.=|+
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe 221 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEE 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 568888999999999999999999999999999999999999888766654443
No 114
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=36.67 E-value=1.7e+02 Score=29.65 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=44.8
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 347 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~ 347 (410)
.++|..+..++..+++++..++.+-.+....-++.+++-.+-..+|.++=+.++
T Consensus 210 k~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 210 KEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999999999999999999999888887777777776655443
No 115
>PRK14162 heat shock protein GrpE; Provisional
Probab=35.89 E-value=1.9e+02 Score=27.29 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 340 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~ 340 (410)
...+..++.+|...+.++..++..|.-+++-|+-.-.|+.++.+.+.
T Consensus 38 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~ 84 (194)
T PRK14162 38 QNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLI 84 (194)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888899999999999999999999999999999998876543
No 116
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=35.83 E-value=3.1e+02 Score=24.15 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=33.6
Q ss_pred eecCCchhhhhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015255 285 LCAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTT 355 (410)
Q Consensus 285 L~g~~~~~~~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~ 355 (410)
|+..+|+.+. -..||..+...=+|+..+..+..+-..++.+-.+...++-.+..++-..|++.+..+..
T Consensus 12 lss~sfaA~~--~~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~ 80 (126)
T PF09403_consen 12 LSSISFAATA--TASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQ 80 (126)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444554443 44566665555555555555555555555555555555555556666666666665543
No 117
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.68 E-value=1.8e+02 Score=29.27 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRN 347 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~ 347 (410)
.+.|.....+|..+|.+|..++.+-.+.....+++.++-.+...+|.++=+.++
T Consensus 215 r~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 215 RQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778889999999999999999999888888888888777777777665555
No 118
>PRK14297 chaperone protein DnaJ; Provisional
Probab=34.59 E-value=64 Score=33.30 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=26.0
Q ss_pred cccCCCCCCCccceEEEe-ccce-eEEEeCCceeEeeeee
Q 015255 244 AFFKKLDGFQPCEITELK-AGTH-VFAVYGDNFFKSASYM 281 (410)
Q Consensus 244 ~~F~~l~g~~~~d~~~l~-~~~H-~F~r~Gdnl~~~~~is 281 (410)
+.....+|.++|+.|.|. .|.| .+.....||+..+.+.
T Consensus 223 i~V~Ip~G~~~G~~I~l~g~G~~~~~~~~~GDL~v~v~v~ 262 (380)
T PRK14297 223 IKVNVPAGVDTGNVIPLRGQGEHGKNGGPTGDLYINIRVA 262 (380)
T ss_pred EEEEeCCCCCCCcEEEEecCccCCCCCCCCccEEEEEEEc
Confidence 344567799999995554 4555 5555556899888777
No 119
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.50 E-value=1.3e+02 Score=35.06 Aligned_cols=53 Identities=28% Similarity=0.388 Sum_probs=44.5
Q ss_pred hhhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 293 EKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 345 (410)
Q Consensus 293 ~~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~ 345 (410)
....++.|+..|..+++||.++++.|.+....=...-.|+....+.-.+||..
T Consensus 326 ~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~K 378 (1200)
T KOG0964|consen 326 ALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAK 378 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 46668889999999999999999999999888777777888877777777753
No 120
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.50 E-value=1.8e+02 Score=25.36 Aligned_cols=27 Identities=37% Similarity=0.577 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHhhHHHHHhhHHHHHHH
Q 015255 295 ENLRAVEAEILSKRAELSKFESEYREV 321 (410)
Q Consensus 295 ~~~~~~e~~~~~k~~e~~~~~~ey~~~ 321 (410)
..|+..|.++..-+.++..++.+-.++
T Consensus 23 s~lr~~E~E~~~l~~el~~l~~~r~~l 49 (120)
T PF12325_consen 23 SQLRRLEGELASLQEELARLEAERDEL 49 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666666665554433
No 121
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=33.33 E-value=1.7e+02 Score=30.32 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 356 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~~ 356 (410)
.++|..=|..|-+ +|...-.||+.++.+..++..+|.+-...|.++..+=.+|=.++-.+
T Consensus 254 lekI~sREk~iN~---qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~v 313 (359)
T PF10498_consen 254 LEKIESREKYINN---QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQV 313 (359)
T ss_pred HHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443 56666778999999999999999888888888777766666666554
No 122
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.94 E-value=2.4e+02 Score=26.18 Aligned_cols=51 Identities=16% Similarity=0.272 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLK 344 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~ 344 (410)
.++|.+.+..|..|..-+..++-||....-.|..+-.|+.....+=.+|+.
T Consensus 129 ~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 129 EEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999999999999999999998888888888777775
No 123
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=32.83 E-value=98 Score=24.88 Aligned_cols=36 Identities=17% Similarity=0.181 Sum_probs=29.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHhcCCCCCC
Q 015255 18 RRDPYEVLGVSRNCTDQEIKSAYRKMALKYHPDKNA 53 (410)
Q Consensus 18 ~~d~Y~vLgv~~~As~~eIK~aYrklal~~HPDkn~ 53 (410)
++|--+++|++|-|++.||+.|-++.+++..--..|
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 566778899999999999999998888887554444
No 124
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=32.47 E-value=1.8e+02 Score=28.94 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 297 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQ 337 (410)
Q Consensus 297 ~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~ 337 (410)
|...+..|....+||.+-+.|+.++..+.+++.+|+.+...
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666677777777777777777776665433
No 125
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=31.76 E-value=3.4e+02 Score=25.23 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=23.1
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 304 ILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHA 351 (410)
Q Consensus 304 ~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~ 351 (410)
......+|..++.|..+...+..++..++........+++...+..|.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~ 169 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQ 169 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555544444444444444444444444
No 126
>PRK14140 heat shock protein GrpE; Provisional
Probab=31.58 E-value=2.5e+02 Score=26.39 Aligned_cols=47 Identities=28% Similarity=0.383 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 340 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~ 340 (410)
.+.|.+.+.+|...+.++..++..|.-+++-|+-.-.|..++.+.+.
T Consensus 36 ~~~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~ 82 (191)
T PRK14140 36 AELLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAE 82 (191)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888888999999999999999999999999888876543
No 127
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=31.49 E-value=3e+02 Score=26.36 Aligned_cols=56 Identities=7% Similarity=0.189 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 295 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 350 (410)
Q Consensus 295 ~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~ 350 (410)
..|..++..+...+.++.+-+.+|..+...+..+..+|.+++..+=+.+-+=|+-.
T Consensus 153 ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~R 208 (239)
T cd07647 153 KEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEER 208 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888999999999999999999999999999999999988877775544433
No 128
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.91 E-value=2.9e+02 Score=23.21 Aligned_cols=52 Identities=21% Similarity=0.387 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHhh--HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSK--RAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 345 (410)
Q Consensus 294 ~~~~~~~e~~~~~k--~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~ 345 (410)
...|..+|+.+..- +.++.+++-+-.++.....++.++++.-..-++=||.+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678899999998 88999999999999999999999988876666666554
No 129
>PF13711 DUF4160: Domain of unknown function (DUF4160)
Probab=30.82 E-value=1e+02 Score=23.53 Aligned_cols=47 Identities=26% Similarity=0.234 Sum_probs=29.2
Q ss_pred cceeEEEeCCceeEeeeeeEEEeecCCchhhhhhHHHHHHHHHhhHHHHH
Q 015255 263 GTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELS 312 (410)
Q Consensus 263 ~~H~F~r~Gdnl~~~~~is~eaL~g~~~~~~~~~~~~~e~~~~~k~~e~~ 312 (410)
-.|+-+++|+ ..+.|.+.-|.-..-......|+.|++=+..-+++|.
T Consensus 16 PpHvHv~~g~---~~a~i~l~~l~~~~G~l~~k~l~~i~~~i~~~~~~l~ 62 (66)
T PF13711_consen 16 PPHVHVRYGG---FEAKIWLEPLEVNEGFLPRKELRKILEWIEENQEELL 62 (66)
T ss_pred CCeEEEEcCC---cEEEEEecchHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3578889998 7788885543322222234567777777766666664
No 130
>PRK14145 heat shock protein GrpE; Provisional
Probab=30.62 E-value=2.8e+02 Score=26.28 Aligned_cols=46 Identities=13% Similarity=0.279 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
...+..+++.+...+.++..++.-|+-+++-|+-.-.|..++.+.+
T Consensus 44 ~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~ 89 (196)
T PRK14145 44 VDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEM 89 (196)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888999999999999999999999999999999887654
No 131
>PRK14144 heat shock protein GrpE; Provisional
Probab=30.47 E-value=2.4e+02 Score=26.76 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=38.5
Q ss_pred hhhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 293 EKENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 293 ~~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
+...+..++..|...+.++..++..|.-+++-|+..-.|.+.|.+.+
T Consensus 43 ~~~~~~~l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~ 89 (199)
T PRK14144 43 GHPSYTALEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANA 89 (199)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888999999999999999999988887654
No 132
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=30.27 E-value=3.8e+02 Score=23.49 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=41.7
Q ss_pred CCccce-EEEeccc-eeEEEeCCceeEeeeeeEEEeecCCchhhhhhHHHHHHHHHhhHHHHHhh--HHHHHHHHHHHHH
Q 015255 252 FQPCEI-TELKAGT-HVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKF--ESEYREVLAQFTE 327 (410)
Q Consensus 252 ~~~~d~-~~l~~~~-H~F~r~Gdnl~~~~~is~eaL~g~~~~~~~~~~~~~e~~~~~k~~e~~~~--~~ey~~~~~~~~~ 327 (410)
+.||.+ +. ..++ +.|.+.|.=+...-+ .+..|+-.-...+.-.+..+|..+..-++.|.+- ..++.+|..+.+.
T Consensus 46 L~~G~l~i~-~~~~~~~~~v~gG~~~v~~~-~v~Il~~~a~~~~~iD~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l~~ 123 (136)
T PRK13446 46 LKIGELTYK-KGGKTHYVAVNGGFAEVSNN-KVTVLAETAERAEEIDVERARAALERAEQRLKKLTPEDDSARAEAALER 123 (136)
T ss_pred eeccEEEEE-eCCcEEEEEEcCEEEEEECC-EEEEEeeeEEEhhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 556666 33 2333 345554432222211 1444443322222223555555555555555443 3578888888888
Q ss_pred HHHHHHHHH
Q 015255 328 MTSRYAQEM 336 (410)
Q Consensus 328 ~~~~~~~~~ 336 (410)
+..|++.-.
T Consensus 124 a~~rl~~~~ 132 (136)
T PRK13446 124 ALIRLQVAG 132 (136)
T ss_pred HHHHHHHHh
Confidence 888877543
No 133
>PHA02562 46 endonuclease subunit; Provisional
Probab=30.19 E-value=2.7e+02 Score=29.77 Aligned_cols=72 Identities=14% Similarity=0.351 Sum_probs=39.3
Q ss_pred eecCCchhhhhhHHHHHHHHHhhHHHHHhhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015255 285 LCAAPFTEEKENLRAVEAEILSKRAELSKFE----------SEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYT 354 (410)
Q Consensus 285 L~g~~~~~~~~~~~~~e~~~~~k~~e~~~~~----------~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~ 354 (410)
+|+.++......+-.++.++...+.++..++ .+|.++..+..+.-.++.+.+..+.++..++..+-.+..
T Consensus 289 ~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~ 368 (562)
T PHA02562 289 TCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIE 368 (562)
T ss_pred CCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777665544444444445444444444443 445555555555555555556666666666666655554
Q ss_pred cC
Q 015255 355 TA 356 (410)
Q Consensus 355 ~~ 356 (410)
..
T Consensus 369 ~l 370 (562)
T PHA02562 369 EL 370 (562)
T ss_pred HH
Confidence 43
No 134
>PRK14284 chaperone protein DnaJ; Provisional
Probab=29.70 E-value=1.2e+02 Score=31.56 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=30.2
Q ss_pred ccceeEeeeeccCCcEEEEec----cCCCcceeeeeeccCCCc---ceeeeccccccCCcee
Q 015255 160 FYSVTITEEEARAGFVCRVQS----SDKSKFKLLYFDREGTGG---LSLALQEDCTKTGKVT 214 (410)
Q Consensus 160 ~ygv~i~~eqi~~G~v~qvqS----~c~sKck~~~f~~~g~Gg---~~~~~~eD~~k~gkvt 214 (410)
.+.+.++.+++..|....+.. .|.. |. |+|. .....|..|.++|.++
T Consensus 135 ~~~l~vslee~~~G~~~~i~~~r~~~C~~-C~-------G~G~~~~~~~~~C~~C~G~G~v~ 188 (391)
T PRK14284 135 KVHITLSFEEAAKGVEKELLVSGYKSCDA-CS-------GSGANSSQGIKVCDRCKGSGQVV 188 (391)
T ss_pred EEEEEEEHHHHhCCeeEEEEEeeeccCCC-Cc-------ccccCCCCCCeecCccCCeeEEE
Confidence 345778888888886655533 4544 77 6662 2345677788787655
No 135
>PRK14298 chaperone protein DnaJ; Provisional
Probab=29.25 E-value=2.1e+02 Score=29.54 Aligned_cols=49 Identities=33% Similarity=0.373 Sum_probs=31.3
Q ss_pred ccceeEeeeeccCCcEEEEec----cCCCcceeeeeeccCCCc---ceeeeccccccCCceeee
Q 015255 160 FYSVTITEEEARAGFVCRVQS----SDKSKFKLLYFDREGTGG---LSLALQEDCTKTGKVTSA 216 (410)
Q Consensus 160 ~ygv~i~~eqi~~G~v~qvqS----~c~sKck~~~f~~~g~Gg---~~~~~~eD~~k~gkvt~~ 216 (410)
.+.+.++.+++..|....+.. .|.. |. |+|. .....|..|.+.|.++..
T Consensus 118 ~~~l~vslee~~~G~~~~i~~~r~~~C~~-C~-------G~G~~~~~~~~~C~~C~G~G~~~~~ 173 (377)
T PRK14298 118 RYDLYITLEEAAFGVRKDIDVPRAERCST-CS-------GTGAKPGTSPKRCPTCGGTGQVTTT 173 (377)
T ss_pred EEEEEEEHHHhhCCeEEEEEEEeeccCCC-CC-------CCcccCCCCCCcCCCCCCccEEEEE
Confidence 345677888888886665543 4544 77 7662 234567778888866544
No 136
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.76 E-value=53 Score=26.50 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=28.6
Q ss_pred EEEeecCCchhh--hhhHHHHHHHHHhhHHHHHhhHH
Q 015255 282 IEALCAAPFTEE--KENLRAVEAEILSKRAELSKFES 316 (410)
Q Consensus 282 ~eaL~g~~~~~~--~~~~~~~e~~~~~k~~e~~~~~~ 316 (410)
++.|.|-..+.+ .+.|++.|.++..|+.=|.+|+.
T Consensus 44 i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~ 80 (83)
T PF07544_consen 44 IRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKE 80 (83)
T ss_pred HHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788777776 77799999999999988888764
No 137
>PRK14151 heat shock protein GrpE; Provisional
Probab=28.68 E-value=2.6e+02 Score=25.94 Aligned_cols=46 Identities=11% Similarity=0.139 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
...+.+++++|...+.++..++..|.-+.+.|+-.-.|..+|.+.+
T Consensus 19 ~~~~~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~ 64 (176)
T PRK14151 19 AAAGDDLTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKA 64 (176)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777888888888888888888888888888887554
No 138
>PRK14147 heat shock protein GrpE; Provisional
Probab=28.28 E-value=2.6e+02 Score=25.76 Aligned_cols=43 Identities=19% Similarity=0.267 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 297 LRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 297 ~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
....+++|...++|+..++..|.-+++-|+-.-.|.+++.+.+
T Consensus 20 ~~~l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~ 62 (172)
T PRK14147 20 TDPLKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQA 62 (172)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677788888888999999999999999988888886654
No 139
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=28.04 E-value=1.3e+02 Score=29.77 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=32.1
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 304 ILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 345 (410)
Q Consensus 304 ~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~ 345 (410)
-...|..|.++..+|..-+++|++++..++.- |..||.+
T Consensus 102 hsdYR~kL~qiR~iy~~ElekyeqaCneftth---V~nlL~e 140 (334)
T KOG0774|consen 102 HSDYRAKLLQIRQIYHNELEKYEQACNEFTTH---VMNLLRE 140 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 45678889999999999999999999877654 7777765
No 140
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=27.91 E-value=55 Score=29.27 Aligned_cols=64 Identities=17% Similarity=0.344 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHhhccCC
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA---------IDELLKQRNEIHASYTTAP 357 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~---------~~~ll~~r~~~~~~~~~~~ 357 (410)
...+.+++.+|....+++.+++.+|..+.+.|+.+..|+.++.+. +.+||.-.+.+...+-.++
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~ 82 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAK 82 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-S
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555666666666666666667777776666666665442 4556766666666655543
No 141
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=27.65 E-value=1.6e+02 Score=27.24 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=41.9
Q ss_pred EEEeccce-eEEEeCCceeEeeeeeEEEeecCCchhhhhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHH
Q 015255 258 TELKAGTH-VFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKFESEYREVLAQF 325 (410)
Q Consensus 258 ~~l~~~~H-~F~r~Gdnl~~~~~is~eaL~g~~~~~~~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~ 325 (410)
|=-++-+. |+.-.|-|||+.+++-+.-- +|..++-...-...-..+.....||.+.+.||-+-+..-
T Consensus 18 IC~KpsttVL~t~~~~DfFY~C~~HL~D~-~F~~p~~~~~~~~~~~k~~el~~eiekvkke~Eekq~~k 85 (182)
T PF08432_consen 18 ICYKPSTTVLITPDNKDFFYVCPSHLKDR-QFATPIYDEEYVEAKKKKKELEEEIEKVKKEYEEKQKWK 85 (182)
T ss_pred EecCCCceEEecCCCCCeEEeCcccccCc-ccCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHh
Confidence 35566666 67777899999999987655 776665544433333444445555666666665554443
No 142
>PRK14285 chaperone protein DnaJ; Provisional
Probab=27.43 E-value=1.2e+02 Score=31.15 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=31.9
Q ss_pred cccceeEeeeeccCCcEEEEe----ccCCCcceeeeeeccCCCc---ceeeeccccccCCceee
Q 015255 159 HFYSVTITEEEARAGFVCRVQ----SSDKSKFKLLYFDREGTGG---LSLALQEDCTKTGKVTS 215 (410)
Q Consensus 159 ~~ygv~i~~eqi~~G~v~qvq----S~c~sKck~~~f~~~g~Gg---~~~~~~eD~~k~gkvt~ 215 (410)
-.+.+.++.+++..|....+. ..|.. |. |.|. .....|..|.++|.++.
T Consensus 122 i~~~l~vtlee~~~G~~~~i~~~r~~~C~~-C~-------G~G~~~~~~~~~C~~C~G~G~~~~ 177 (365)
T PRK14285 122 LTYQIEISLEDAYLGYKNNINITRNMLCES-CL-------GKKSEKGTSPSICNMCNGSGRVMQ 177 (365)
T ss_pred EEEEEEEEHHHhhCCeEEEEEeeecccCCC-CC-------CcccCCCCCCccCCCccCceeEEe
Confidence 344577888888888665553 35644 77 7762 23456777888886654
No 143
>PRK14160 heat shock protein GrpE; Provisional
Probab=27.40 E-value=2.5e+02 Score=26.94 Aligned_cols=45 Identities=18% Similarity=0.273 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 295 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 295 ~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
..+..++..+...++++..++..|+-+++-|+-.-.|..++.+.+
T Consensus 61 ~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 105 (211)
T PRK14160 61 DENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGI 105 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667778888888888888899999999999999988887654
No 144
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.34 E-value=4e+02 Score=26.87 Aligned_cols=56 Identities=23% Similarity=0.303 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEI 349 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~ 349 (410)
.++|..+|.+......||..++.|..++.+.=.++.....+..++..+..+.++..
T Consensus 49 ~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~ 104 (314)
T PF04111_consen 49 EEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNEL 104 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666555554444444444333334444444433
No 145
>PRK14155 heat shock protein GrpE; Provisional
Probab=27.03 E-value=2.3e+02 Score=26.98 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=35.2
Q ss_pred hHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 296 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 296 ~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
.+.+.+.+|...++|+..++..|.-+++-|+-.-.|.++|.+.+
T Consensus 14 ~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~ 57 (208)
T PRK14155 14 EADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDA 57 (208)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667778888888889999999999999988888887654
No 146
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=26.53 E-value=2.5e+02 Score=25.38 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQE 335 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~ 335 (410)
.+.|..++..|..++.|+..+..==+.-....++++.|..+.
T Consensus 60 ~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eL 101 (146)
T PF05852_consen 60 KNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEEL 101 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 455666788888888887776552233333444444444333
No 147
>PRK14153 heat shock protein GrpE; Provisional
Probab=26.48 E-value=2.3e+02 Score=26.76 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 296 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 340 (410)
Q Consensus 296 ~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~ 340 (410)
.+...+.+|...+.++..++..|.-+++.|+-.-.|..++.+.+.
T Consensus 34 ~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~ 78 (194)
T PRK14153 34 EDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENR 78 (194)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567778888888999999999999999999998888866543
No 148
>PRK14159 heat shock protein GrpE; Provisional
Probab=26.18 E-value=2.5e+02 Score=26.08 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=36.7
Q ss_pred hhhHHHHHHH-HHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAE-ILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAID 340 (410)
Q Consensus 294 ~~~~~~~e~~-~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~ 340 (410)
++++.+||.+ |...+.++..++..|.-+++-|+-...|..+|.+.+.
T Consensus 21 ~~~~~~~~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~ 68 (176)
T PRK14159 21 DENLQNIEDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAM 68 (176)
T ss_pred hhhHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777654 4566888888999999999999999998888866543
No 149
>PRK14141 heat shock protein GrpE; Provisional
Probab=25.95 E-value=2.7e+02 Score=26.60 Aligned_cols=40 Identities=10% Similarity=0.192 Sum_probs=30.8
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 300 VEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 300 ~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
.|.+|...+.|+..++..|.-+++.|+-.-.|..+|.+.+
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~ 75 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADA 75 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667777788888888888888888888888876654
No 150
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=25.90 E-value=3.3e+02 Score=27.92 Aligned_cols=59 Identities=14% Similarity=0.354 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 015255 296 NLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTT 355 (410)
Q Consensus 296 ~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~ 355 (410)
.|.+|+++|..-+.+..++-.+--+.-.++.++..+|+..++.|+.+...-+ .+..|.-
T Consensus 117 tL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~ 175 (391)
T KOG1850|consen 117 TLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGK 175 (391)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhH
Confidence 4778999999999999999888888999999999999999999999888777 6666543
No 151
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=25.37 E-value=3.5e+02 Score=23.43 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDE 341 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ 341 (410)
.+.+...+.++..-+.+|..-...+++|...|+.=+.++..-.+++..
T Consensus 16 ~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~ 63 (132)
T PF07926_consen 16 KEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQ 63 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 455677888899999999999999999999999777777666444443
No 152
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.06 E-value=4.9e+02 Score=23.36 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTS 330 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~ 330 (410)
.+.+..++.+|...++|+...+.++..+.+....+.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556777777777777777777777777776665554
No 153
>PRK14157 heat shock protein GrpE; Provisional
Probab=24.72 E-value=2.3e+02 Score=27.47 Aligned_cols=40 Identities=13% Similarity=0.191 Sum_probs=27.9
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 300 VEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 300 ~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
+|++|...+.|+..++..|+-+++.|+-.-.|..+|.+.+
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~ 121 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRF 121 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666677777777777777777777777777776553
No 154
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=24.69 E-value=5.7e+02 Score=24.02 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 015255 336 MQAIDELLKQRNEIHASYT 354 (410)
Q Consensus 336 ~~~~~~ll~~r~~~~~~~~ 354 (410)
.+....|-.+|+++|.-|.
T Consensus 113 ~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 113 EQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444555554443
No 155
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=24.67 E-value=3.8e+02 Score=26.40 Aligned_cols=51 Identities=22% Similarity=0.416 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLK 344 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~ 344 (410)
.++++.+.+.+..-+.++.+-+.+|.+++..-...+.+|.++|..+=+..-
T Consensus 167 ~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q 217 (258)
T cd07681 167 QEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQ 217 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 356788888999999999999999999999999999999999987755443
No 156
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=24.65 E-value=2.3e+02 Score=26.74 Aligned_cols=52 Identities=10% Similarity=0.279 Sum_probs=28.7
Q ss_pred HHhhHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcc
Q 015255 304 ILSKRAELSKFESEYREVLAQFTEMTS-RYAQEMQAIDELLKQRNEIHASYTT 355 (410)
Q Consensus 304 ~~~k~~e~~~~~~ey~~~~~~~~~~~~-~~~~~~~~~~~ll~~r~~~~~~~~~ 355 (410)
|..-++-|..-+.||..|....+.+-. ...++...+.+.|+.|..+|+.|..
T Consensus 84 l~~Ek~ai~~a~~e~~~~~~~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~~ 136 (204)
T PF10368_consen 84 LKKEKEAIEKAKEEFKKAKKYIDKIEDEKLKKQAKELNEAMKKRYKSYDKLYK 136 (204)
T ss_dssp HHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555566666555555544 3667778899999999999988753
No 157
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=24.56 E-value=4.8e+02 Score=22.80 Aligned_cols=84 Identities=13% Similarity=0.055 Sum_probs=42.6
Q ss_pred CCCCCccce-EEEeccceeEEEeCCceeEeeeeeEEEeecCCchhhhhhHHHHHHHHHhhHHHHHhhH--HHHHHHHHHH
Q 015255 249 LDGFQPCEI-TELKAGTHVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSKFE--SEYREVLAQF 325 (410)
Q Consensus 249 l~g~~~~d~-~~l~~~~H~F~r~Gdnl~~~~~is~eaL~g~~~~~~~~~~~~~e~~~~~k~~e~~~~~--~ey~~~~~~~ 325 (410)
+..+.||.+ +......+.|.+.|.=+...-+ .+..|+-.-...+.-.+..++..+..-.+.|.+-+ .|+.+|..+.
T Consensus 41 it~L~~G~l~i~~~~~~~~~~v~gG~~~v~~~-~v~Il~~~a~~~~dID~~~a~~~~~~A~~~l~~~~~~~~~~~a~~~l 119 (134)
T CHL00063 41 ATALDIGVLRIRLNDQWLTMALMGGFARIGNN-EITILVNDAEKGSDIDPQEAQQTLEIAEANLEKAEGKKQKIEANLAL 119 (134)
T ss_pred EeEecceEEEEEECCeEEEEEEcceEEEEECC-EEEEEECeeEchhhCCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 344667777 4333223456666543333222 24445544333333344555555555555554432 4677777777
Q ss_pred HHHHHHHH
Q 015255 326 TEMTSRYA 333 (410)
Q Consensus 326 ~~~~~~~~ 333 (410)
..+.+|++
T Consensus 120 ~ra~arl~ 127 (134)
T CHL00063 120 KRARARVE 127 (134)
T ss_pred HHHHHHHH
Confidence 77766655
No 158
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=24.46 E-value=4.2e+02 Score=26.19 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=51.2
Q ss_pred hhhhHHHHHHHHHhhHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015255 293 EKENLRAVEAEILSKRAELSKFESEYREV----LAQFTEMTSRYAQEMQAIDELLKQRNEIHASYTTA 356 (410)
Q Consensus 293 ~~~~~~~~e~~~~~k~~e~~~~~~ey~~~----~~~~~~~~~~~~~~~~~~~~ll~~r~~~~~~~~~~ 356 (410)
..-+++..-.....|-..|-.|+.+++.- ...|+.|..++..+..+|+.+.+.|+..-..++..
T Consensus 171 ~~~~~k~~~~~~~~k~~~l~~fe~~~~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~~~ 238 (267)
T PF09903_consen 171 KSAKYKKEQENKKEKMEDLYNFEEEFRQFIEAIVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLLSS 238 (267)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666667777777788888887764 45688999999999999999999999999988743
No 159
>PRK14146 heat shock protein GrpE; Provisional
Probab=24.03 E-value=3.5e+02 Score=25.89 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 295 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 295 ~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
+.+..++++|...+.++..++..|+-+++-|+-...|..++...+
T Consensus 54 ~~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~ 98 (215)
T PRK14146 54 ETETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSI 98 (215)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888899999999999999999999999998887654
No 160
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.00 E-value=5.6e+02 Score=24.79 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 015255 331 RYAQEMQAIDELLKQ 345 (410)
Q Consensus 331 ~~~~~~~~~~~ll~~ 345 (410)
-|...+.+|++++++
T Consensus 89 ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 89 EYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555555443
No 161
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=23.82 E-value=3.6e+02 Score=24.62 Aligned_cols=33 Identities=9% Similarity=0.387 Sum_probs=25.3
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Q 015255 300 VEAEILSKRAELSKFESEYREVLAQFTEMTSRY 332 (410)
Q Consensus 300 ~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~ 332 (410)
+=.++...|++|..++.+|..++.-|+.|+.++
T Consensus 70 ~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~ 102 (157)
T COG3352 70 QKKQLQDIKEELERLEENIKDLVSLYELVSRDF 102 (157)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566778888888888888888888887743
No 162
>TIGR02616 tnaC_leader tryptophanase leader peptide. Members of this family are the apparent leader peptides of tryptophanase operons in Esherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae type b, and related species. All members of the seed alignment are examples ORFs upstream of tryptophanase, with a start codon, a conserved single Trp residue, and several other conserved residues. It is suggested (Konan KV and Yanofsky C) that the nascent peptide interacts with the ribosome once (if) the ribosome reaches the stop codon. Note that this model describes a much broader set (and shorter protein region) than Pfam model pfam08053.
Probab=23.67 E-value=43 Score=21.41 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=9.2
Q ss_pred CCceeeeccccc
Q 015255 394 KKKWFNIHLKAD 405 (410)
Q Consensus 394 ~~~~~~~~~~~~ 405 (410)
-+|||||.-+..
T Consensus 7 ~s~WfniD~rIs 18 (26)
T TIGR02616 7 LSKWFNIDNRIS 18 (26)
T ss_pred CCceEEcchhhe
Confidence 579999976654
No 163
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.63 E-value=3.7e+02 Score=26.23 Aligned_cols=53 Identities=26% Similarity=0.375 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEI 349 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~ 349 (410)
.+.+..++.++...+.+|...+.+..++.+..++.+....++ ..++..+|+++
T Consensus 116 ~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~---~~~~~~~~~~L 168 (239)
T COG1579 116 MEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE---GQELSSKREEL 168 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 445666777788888888888888888888888877766665 34445555544
No 164
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.52 E-value=3.8e+02 Score=21.35 Aligned_cols=56 Identities=14% Similarity=0.320 Sum_probs=46.9
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEI 349 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~ 349 (410)
...+.+++..+..-..++.....|=.+....-.+++++.....+.++.+...=.++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~ 80 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADL 80 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45578888888888999999999999999999999999999988888887765444
No 165
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.51 E-value=4.4e+02 Score=22.03 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=37.7
Q ss_pred CCceeEeeeee----EEEeecCCchhh---hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 015255 271 GDNFFKSASYM----IEALCAAPFTEE---KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYA 333 (410)
Q Consensus 271 Gdnl~~~~~is----~eaL~g~~~~~~---~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~ 333 (410)
|.++|..+.|. +-..-|..+-.+ .+-+.-++..+....+++.+++.+..+...++.++.....
T Consensus 56 g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 56 GAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred CCceEEEEEECCCCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888875 334455333333 3345556666666666666666666666666665555443
No 166
>smart00721 BAR BAR domain.
Probab=23.19 E-value=1.8e+02 Score=26.94 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=28.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 310 ELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQRNEI 349 (410)
Q Consensus 310 e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~ 349 (410)
+|.+.+.|+..|+..|+++...+..+ +-.|+..|...
T Consensus 171 kl~~~e~el~~ak~~fe~~~~~l~~~---l~~l~~~~~~~ 207 (239)
T smart00721 171 KLAKAEEELRKAKQEFEESNAQLVEE---LPQLVASRVDF 207 (239)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHh
Confidence 56778899999999999998888887 45556666653
No 167
>PRK14278 chaperone protein DnaJ; Provisional
Probab=22.90 E-value=1.7e+02 Score=30.17 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=31.3
Q ss_pred cccceeEeeeeccCCcEEEEec----cCCCcceeeeeeccCCCc---ceeeeccccccCCceeee
Q 015255 159 HFYSVTITEEEARAGFVCRVQS----SDKSKFKLLYFDREGTGG---LSLALQEDCTKTGKVTSA 216 (410)
Q Consensus 159 ~~ygv~i~~eqi~~G~v~qvqS----~c~sKck~~~f~~~g~Gg---~~~~~~eD~~k~gkvt~~ 216 (410)
..+.+.++.+++..|....+.. .|.. |. |.|. .....|..|.++|.++..
T Consensus 115 ~~~~l~vtLee~~~G~~~~i~~~~~~~C~~-C~-------G~G~~~~~~~~~C~~C~G~G~~~~~ 171 (378)
T PRK14278 115 SLLRMRLDLEECATGVTKQVTVDTAVLCDR-CH-------GKGTAGDSKPVTCDTCGGRGEVQTV 171 (378)
T ss_pred eEEEEEEEHHHhcCCeEEEEEEEeeccCCC-Cc-------CccCCCCCCceecCCccCceEEEEE
Confidence 3455778888888886665533 4544 76 6662 234567777777765443
No 168
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=22.82 E-value=83 Score=20.39 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhcCC
Q 015255 33 DQEIKSAYRKMALKYHP 49 (410)
Q Consensus 33 ~~eIK~aYrklal~~HP 49 (410)
.++.+.+.|+.||.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 36788999999999994
No 169
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.71 E-value=2.6e+02 Score=21.18 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=13.1
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHH
Q 015255 300 VEAEILSKRAELSKFESEYREVLAQFTEMT 329 (410)
Q Consensus 300 ~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~ 329 (410)
+..++...|+++.+++.-.+.++.-|+-|+
T Consensus 19 vk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444443
No 170
>PRK11637 AmiB activator; Provisional
Probab=22.47 E-value=4.4e+02 Score=27.43 Aligned_cols=24 Identities=13% Similarity=0.454 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESE 317 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~e 317 (410)
.++|.+++.+|.....+|..++.+
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~ 69 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQ 69 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544444443333
No 171
>PRK09039 hypothetical protein; Validated
Probab=22.17 E-value=5e+02 Score=26.52 Aligned_cols=59 Identities=20% Similarity=0.323 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 015255 295 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA-IDELLKQRNEIHASY 353 (410)
Q Consensus 295 ~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~-~~~ll~~r~~~~~~~ 353 (410)
..|..++.||...-.+|...|....++..+++....++..-... +.+|-.-|.+++..+
T Consensus 144 ~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l 203 (343)
T PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEFFGRL 203 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555666666666666666666777777777776666666644 777777788886444
No 172
>PRK14279 chaperone protein DnaJ; Provisional
Probab=22.00 E-value=1.6e+02 Score=30.67 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=30.9
Q ss_pred ccceeEeeeeccCCcEEEEec----cCCCcceeeeeeccCCCc---ceeeeccccccCCceee
Q 015255 160 FYSVTITEEEARAGFVCRVQS----SDKSKFKLLYFDREGTGG---LSLALQEDCTKTGKVTS 215 (410)
Q Consensus 160 ~ygv~i~~eqi~~G~v~qvqS----~c~sKck~~~f~~~g~Gg---~~~~~~eD~~k~gkvt~ 215 (410)
.+.+.++.+++..|....+.. .|.. |. |+|. .....|..|.+.|.++.
T Consensus 150 ~~~l~ltLee~~~G~~~~v~~~~~~~C~~-C~-------G~G~~~~~~~~~C~~C~G~G~~~~ 204 (392)
T PRK14279 150 ETETTLDFVEAAKGVTMPLRLTSPAPCTT-CH-------GSGARPGTSPKVCPTCNGSGVISR 204 (392)
T ss_pred EEEEEEEHHHHhCCeEEEEeeeccccCCC-Cc-------cccccCCCCCCCCCCCcceEEEEE
Confidence 345778888888886665543 4544 77 7762 23456777777876654
No 173
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=21.97 E-value=4.9e+02 Score=25.18 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 295 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELL 343 (410)
Q Consensus 295 ~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll 343 (410)
..++.+++.+..-+.++.+-+.+|..+...+.++..+|.+++...-+.+
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~f 202 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEFF 202 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999999999976544443
No 174
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=21.97 E-value=2.9e+02 Score=23.35 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=36.2
Q ss_pred HHHHHHhhHHHHHhhHH--HHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHhhccC
Q 015255 300 VEAEILSKRAELSKFES--EYREVLAQ-FTEMTSRY---AQEMQAIDELLKQRNEIHASYTTA 356 (410)
Q Consensus 300 ~e~~~~~k~~e~~~~~~--ey~~~~~~-~~~~~~~~---~~~~~~~~~ll~~r~~~~~~~~~~ 356 (410)
+.+.|..||.||..++. ++...++. .+++.+++ ..-++.|...|+.=+.+..+..-+
T Consensus 2 l~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~Is~A 64 (103)
T PF08654_consen 2 LQARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFRAISMA 64 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHH
Confidence 46789999999877653 33333333 23333333 344567788888888888776655
No 175
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=21.78 E-value=5.6e+02 Score=24.77 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 295 ENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAIDELLKQ 345 (410)
Q Consensus 295 ~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~~~ll~~ 345 (410)
..|..++..+...+.++..=+.+|..+...+..+..+|.+++..+-+.+-.
T Consensus 153 keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q~ 203 (242)
T cd07671 153 KQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQL 203 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888889999999999999999999999999999998877655543
No 176
>PRK14156 heat shock protein GrpE; Provisional
Probab=21.72 E-value=3.4e+02 Score=25.20 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=34.2
Q ss_pred HHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 300 VEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 300 ~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
.+.+|...+.++..++..|.-+++.|+-.-.|..++...+
T Consensus 32 ~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~ 71 (177)
T PRK14156 32 EKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQL 71 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888889999999999999999999999988886653
No 177
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=21.43 E-value=9e+02 Score=28.48 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015255 327 EMTSRYAQEMQAIDELLKQRNEI 349 (410)
Q Consensus 327 ~~~~~~~~~~~~~~~ll~~r~~~ 349 (410)
+.-.|=++|...-.+|.++|++.
T Consensus 855 e~~r~~eee~~~r~~l~~qr~e~ 877 (1018)
T KOG2002|consen 855 EARRKEEEEKARREKLEKQREEY 877 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566667777777653
No 178
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=21.34 E-value=5.2e+02 Score=22.16 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHhhHHHHHhhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 294 KENLRAVEAEILSKRAELSKFESEYR---------EVLAQFTEMTSRYAQEMQAIDELLKQRNEIH 350 (410)
Q Consensus 294 ~~~~~~~e~~~~~k~~e~~~~~~ey~---------~~~~~~~~~~~~~~~~~~~~~~ll~~r~~~~ 350 (410)
.+-+|..|+=-+.||.+|+..+.|+. +-+.+=+++..|+.........||..=+..|
T Consensus 14 lD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~~~ 79 (106)
T PF11594_consen 14 LDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQNQH 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678899999999999998888753 3333444444444444444444444433333
No 179
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.64 E-value=4.7e+02 Score=24.25 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=32.5
Q ss_pred HHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 299 AVEAEILSKRAELSKFESEYREVLAQFTEMTSRYAQEMQAI 339 (410)
Q Consensus 299 ~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~~ 339 (410)
..+..|...+.++..++..|.-+++.|+-...|..++.+.+
T Consensus 23 ~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~ 63 (178)
T PRK14161 23 TANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEA 63 (178)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888889999998888888887654
No 180
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=20.60 E-value=5.8e+02 Score=22.34 Aligned_cols=86 Identities=1% Similarity=-0.075 Sum_probs=42.3
Q ss_pred CCCCCccce-EEEecc-ceeEEEeCCceeEeeeeeEEEeecCCchhhhhhHHHHHHHHHhhHHHHHh--hHHHHHHHHHH
Q 015255 249 LDGFQPCEI-TELKAG-THVFAVYGDNFFKSASYMIEALCAAPFTEEKENLRAVEAEILSKRAELSK--FESEYREVLAQ 324 (410)
Q Consensus 249 l~g~~~~d~-~~l~~~-~H~F~r~Gdnl~~~~~is~eaL~g~~~~~~~~~~~~~e~~~~~k~~e~~~--~~~ey~~~~~~ 324 (410)
+..+.||.+ +....+ .+.|.+-|.=+...-+ .+..|+-.--..+.=.+..++..+..-++.|.+ -..+|..|...
T Consensus 42 it~L~~G~~~i~~~~~~~~~~~v~gGf~ev~~n-~v~Ilad~ae~~eeID~~~a~~a~erAe~~L~~~~~~~~~~~a~~~ 120 (133)
T PRK00539 42 IAAIQSHVCKITFADKTKRSAIIGAGLLLIKKT-EAKIFTENFVFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQN 120 (133)
T ss_pred EeEecceEEEEEECCCcEEEEEEeeeEEEEECC-EEEEEECeEEchhhCCHHHHHHHHHHHHHHHHhCcChHHHHHHHHH
Confidence 344566666 433233 2455555532222221 144444332222222344444444444444433 23578888888
Q ss_pred HHHHHHHHHHH
Q 015255 325 FTEMTSRYAQE 335 (410)
Q Consensus 325 ~~~~~~~~~~~ 335 (410)
...+..|+.+.
T Consensus 121 L~ra~~Rl~~~ 131 (133)
T PRK00539 121 LMFELLKLSEK 131 (133)
T ss_pred HHHHHHHHhhc
Confidence 98888888764
No 181
>PRK14296 chaperone protein DnaJ; Provisional
Probab=20.27 E-value=3.6e+02 Score=27.75 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=31.1
Q ss_pred ccceeEeeeeccCCcEEEE----eccCCCcceeeeeeccCCCc---ceeeeccccccCCceeee
Q 015255 160 FYSVTITEEEARAGFVCRV----QSSDKSKFKLLYFDREGTGG---LSLALQEDCTKTGKVTSA 216 (410)
Q Consensus 160 ~ygv~i~~eqi~~G~v~qv----qS~c~sKck~~~f~~~g~Gg---~~~~~~eD~~k~gkvt~~ 216 (410)
.+.+.++.+++..|....+ ...|.. |. |+|. .....|..|.++|.++..
T Consensus 126 ~~~l~ltlee~~~G~~~~i~~~~~~~C~~-C~-------G~G~~~~~~~~~C~~C~G~G~~~~~ 181 (372)
T PRK14296 126 SLDIYLTFKELLFGVDKIIELDLLTNCSK-CF-------GSGAESNSDIHICNNCHGTGEVLVQ 181 (372)
T ss_pred EEEeeccHHHhhCCeeEEEEEeeeeccCC-CC-------CCccCCCCCCccCCCCCCCceEEEE
Confidence 3456777888888865554 335654 77 7763 234567888888866543
No 182
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.19 E-value=5e+02 Score=22.45 Aligned_cols=64 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred EEeccceeEEEeCCceeEeeeee-EEEeecCCchhh--hhhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHH
Q 015255 259 ELKAGTHVFAVYGDNFFKSASYM-IEALCAAPFTEE--KENLRAVEAEILSKRAELSKFESEYREVLAQFTEMTSR 331 (410)
Q Consensus 259 ~l~~~~H~F~r~Gdnl~~~~~is-~eaL~g~~~~~~--~~~~~~~e~~~~~k~~e~~~~~~ey~~~~~~~~~~~~~ 331 (410)
.|...++++.=-|.|+|...++. + .+ ..++..++.++....++|...+.++.+....-.++..+
T Consensus 71 ~v~~~~kV~v~lG~g~~vE~~~~eA---------~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 71 KVKDKDKVIVSLGAGYSAEKDLDEA---------IEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred EecCCCeEEEEcCCCEEEEecHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 183
>PRK14280 chaperone protein DnaJ; Provisional
Probab=20.11 E-value=3.8e+02 Score=27.64 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=29.5
Q ss_pred ccceeEeeeeccCCcEEEEec----cCCCcceeeeeeccCCCc---ceeeeccccccCCceee
Q 015255 160 FYSVTITEEEARAGFVCRVQS----SDKSKFKLLYFDREGTGG---LSLALQEDCTKTGKVTS 215 (410)
Q Consensus 160 ~ygv~i~~eqi~~G~v~qvqS----~c~sKck~~~f~~~g~Gg---~~~~~~eD~~k~gkvt~ 215 (410)
.+.+.++.+++..|....+.. .|.. |. |+|. .....|..|.++|.++.
T Consensus 120 ~~~l~vtLee~~~G~~~~i~~~r~~~C~~-C~-------G~G~~~~~~~~~C~~C~G~G~~~~ 174 (376)
T PRK14280 120 QYTMTLTFEEAVFGKEKEIEIPKEETCDT-CH-------GSGAKPGTSKETCSHCGGSGQVSV 174 (376)
T ss_pred EEEEEEEHHHHhCCceeEEEEeeeccCCC-CC-------CcccCCCCCCccCCCCCCEEEEEE
Confidence 345778888888886655533 4544 76 6662 22445676777775543
No 184
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=20.09 E-value=3.3e+02 Score=21.98 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=26.4
Q ss_pred HhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015255 305 LSKRAELSKFESEYREVLAQFTEMTSRYAQEMQA 338 (410)
Q Consensus 305 ~~k~~e~~~~~~ey~~~~~~~~~~~~~~~~~~~~ 338 (410)
...|-...++..+|..++..|..+..+|.+.+.+
T Consensus 67 ~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 67 RQQKLQREKLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456677888889999999999988888776543
Done!