Query 015256
Match_columns 410
No_of_seqs 173 out of 1330
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14541 TAXi_C: Xylanase inhi 99.9 2.9E-26 6.3E-31 207.0 15.5 154 41-196 1-161 (161)
2 cd05472 cnd41_like Chloroplast 99.9 8.2E-25 1.8E-29 214.5 19.5 168 23-199 130-299 (299)
3 cd05489 xylanase_inhibitor_I_l 99.9 6E-25 1.3E-29 222.9 17.9 169 24-197 184-361 (362)
4 PLN03146 aspartyl protease fam 99.9 3.3E-23 7.2E-28 214.7 18.3 162 26-201 267-430 (431)
5 cd05473 beta_secretase_like Be 99.9 8.7E-23 1.9E-27 206.2 15.0 174 19-203 170-351 (364)
6 cd05490 Cathepsin_D2 Cathepsin 99.9 3.7E-22 7.9E-27 198.2 14.9 152 18-196 168-325 (325)
7 cd05487 renin_like Renin stimu 99.9 6.2E-22 1.3E-26 197.0 16.1 153 17-197 168-326 (326)
8 cd05486 Cathespin_E Cathepsin 99.9 6.2E-22 1.3E-26 196.0 14.6 150 19-196 161-316 (316)
9 cd06098 phytepsin Phytepsin, a 99.9 1.2E-21 2.5E-26 194.5 15.7 141 18-196 171-317 (317)
10 cd05478 pepsin_A Pepsin A, asp 99.9 1.3E-21 2.8E-26 193.8 14.8 148 18-196 168-317 (317)
11 cd05476 pepsin_A_like_plant Ch 99.9 1.7E-21 3.7E-26 188.3 14.8 132 22-199 129-265 (265)
12 KOG1339 Aspartyl protease [Pos 99.9 7E-21 1.5E-25 195.1 19.2 168 17-200 222-397 (398)
13 cd06096 Plasmepsin_5 Plasmepsi 99.9 2.2E-21 4.7E-26 193.2 14.4 130 24-200 197-326 (326)
14 cd05485 Cathepsin_D_like Cathe 99.9 3.5E-21 7.7E-26 192.1 15.4 150 19-196 174-329 (329)
15 PTZ00165 aspartyl protease; Pr 99.9 5.1E-21 1.1E-25 200.9 16.7 147 23-202 293-451 (482)
16 cd05477 gastricsin Gastricsins 99.9 5E-21 1.1E-25 189.5 15.3 150 18-197 162-318 (318)
17 cd05474 SAP_like SAPs, pepsin- 99.9 4.5E-21 9.7E-26 186.7 14.4 160 19-197 132-295 (295)
18 cd05488 Proteinase_A_fungi Fun 99.9 4.5E-21 9.8E-26 190.3 14.5 146 19-196 169-320 (320)
19 PTZ00013 plasmepsin 4 (PM4); P 99.8 6.6E-20 1.4E-24 191.1 16.4 151 17-198 296-449 (450)
20 PTZ00147 plasmepsin-1; Provisi 99.8 5.7E-20 1.2E-24 191.7 16.0 150 18-198 298-450 (453)
21 cd05475 nucellin_like Nucellin 99.8 3.3E-20 7.1E-25 180.5 12.5 128 20-199 139-273 (273)
22 PF00026 Asp: Eukaryotic aspar 99.8 1.8E-19 4E-24 175.9 12.3 152 18-197 161-317 (317)
23 cd06097 Aspergillopepsin_like 99.7 2E-17 4.4E-22 160.8 9.7 119 19-196 160-278 (278)
24 cd05471 pepsin_like Pepsin-lik 99.6 6.4E-15 1.4E-19 141.2 11.5 122 19-196 162-283 (283)
25 cd05479 RP_DDI RP_DDI; retrope 94.9 0.3 6.4E-06 42.4 10.2 26 168-193 98-123 (124)
26 TIGR02281 clan_AA_DTGA clan AA 94.9 0.61 1.3E-05 40.5 12.0 38 37-88 7-44 (121)
27 TIGR03698 clan_AA_DTGF clan AA 92.3 0.69 1.5E-05 39.3 7.6 24 168-191 83-106 (107)
28 PF08284 RVP_2: Retroviral asp 89.3 2.7 5.9E-05 37.2 8.9 97 68-196 34-131 (135)
29 PF01102 Glycophorin_A: Glycop 87.5 0.5 1.1E-05 41.5 2.9 48 357-409 64-113 (122)
30 PF13650 Asp_protease_2: Aspar 85.2 1.4 3E-05 34.7 4.2 29 49-88 3-31 (90)
31 PF15330 SIT: SHP2-interacting 85.1 1.2 2.7E-05 38.2 4.0 30 376-409 15-44 (107)
32 PF08693 SKG6: Transmembrane a 84.7 0.18 3.9E-06 35.8 -1.0 28 360-387 11-39 (40)
33 PF01034 Syndecan: Syndecan do 83.8 0.34 7.3E-06 37.8 0.0 33 360-393 12-44 (64)
34 PF13975 gag-asp_proteas: gag- 83.6 2.4 5.3E-05 33.2 4.9 30 48-88 12-41 (72)
35 PF15050 SCIMP: SCIMP protein 82.6 1.4 3E-05 38.6 3.3 12 353-364 2-13 (133)
36 cd05484 retropepsin_like_LTR_2 80.9 2.3 5.1E-05 34.4 4.0 30 48-88 4-33 (91)
37 cd05483 retropepsin_like_bacte 79.7 3.8 8.3E-05 32.4 4.9 30 48-88 6-35 (96)
38 PF01299 Lamp: Lysosome-associ 79.2 1.3 2.8E-05 44.3 2.4 37 357-396 270-306 (306)
39 PF15179 Myc_target_1: Myc tar 70.1 4.5 9.9E-05 37.9 3.2 36 355-391 18-53 (197)
40 cd06095 RP_RTVL_H_like Retrope 69.5 6.8 0.00015 31.5 3.9 29 49-88 3-31 (86)
41 PF00077 RVP: Retroviral aspar 63.6 8.4 0.00018 31.3 3.3 27 48-85 9-35 (100)
42 PF04478 Mid2: Mid2 like cell 59.7 2.8 6E-05 38.3 -0.2 31 357-388 49-79 (154)
43 PF12751 Vac7: Vacuolar segreg 58.5 8.1 0.00018 40.2 2.9 57 348-405 292-348 (387)
44 COG3577 Predicted aspartyl pro 58.4 18 0.0004 34.7 5.0 38 37-88 101-138 (215)
45 PF11770 GAPT: GRB2-binding ad 56.7 5.3 0.00011 36.3 1.0 27 360-386 10-36 (158)
46 cd06094 RP_Saci_like RP_Saci_l 55.4 63 0.0014 26.9 7.1 21 66-86 9-29 (89)
47 PRK15348 type III secretion sy 54.0 12 0.00026 36.8 3.1 32 353-386 216-247 (249)
48 COG0245 IspF 2C-methyl-D-eryth 52.7 24 0.00052 32.4 4.6 42 253-294 94-135 (159)
49 cd05481 retropepsin_like_LTR_1 52.2 17 0.00036 30.0 3.3 21 68-88 12-32 (93)
50 PF14979 TMEM52: Transmembrane 51.1 20 0.00043 32.6 3.7 31 358-388 21-51 (154)
51 PF12273 RCR: Chitin synthesis 50.2 16 0.00035 31.9 3.0 24 365-388 6-29 (130)
52 PF12384 Peptidase_A2B: Ty3 tr 50.0 1.4E+02 0.0031 27.8 9.2 22 67-88 46-67 (177)
53 PF02542 YgbB: YgbB family; I 47.8 36 0.00077 31.3 4.9 46 250-295 91-136 (157)
54 PF09668 Asp_protease: Asparty 47.7 25 0.00054 31.0 3.8 30 48-88 28-57 (124)
55 KOG0012 DNA damage inducible p 47.0 3.1E+02 0.0067 28.6 11.9 38 161-198 310-347 (380)
56 PF02817 E3_binding: e3 bindin 46.8 10 0.00023 26.6 1.1 23 265-287 2-24 (39)
57 KOG3653 Transforming growth fa 46.6 23 0.00049 38.1 4.0 39 371-409 166-213 (534)
58 PF13268 DUF4059: Protein of u 46.6 22 0.00047 28.5 2.9 29 365-393 12-40 (72)
59 PF02594 DUF167: Uncharacteris 44.6 18 0.00038 29.2 2.2 34 256-289 29-63 (77)
60 PF06697 DUF1191: Protein of u 43.9 20 0.00044 35.8 2.9 93 284-386 138-242 (278)
61 COG2976 Uncharacterized protei 43.8 18 0.00038 34.6 2.4 32 352-387 15-46 (207)
62 PF12768 Rax2: Cortical protei 43.5 22 0.00048 35.5 3.2 43 362-404 232-274 (281)
63 PF02160 Peptidase_A3: Caulifl 42.1 64 0.0014 30.8 5.9 53 126-196 65-117 (201)
64 COG5550 Predicted aspartyl pro 41.6 18 0.0004 31.9 2.0 20 69-88 29-49 (125)
65 PF14316 DUF4381: Domain of un 39.0 23 0.0005 31.5 2.3 22 371-394 30-51 (146)
66 KOG1094 Discoidin domain recep 38.8 43 0.00094 37.2 4.7 72 302-390 349-420 (807)
67 PF11743 DUF3301: Protein of u 38.8 9.5 0.00021 32.0 -0.2 34 375-408 8-41 (97)
68 KOG1031 Predicted Ca2+-depende 38.3 12 0.00026 40.9 0.4 21 338-358 458-482 (1169)
69 PTZ00382 Variant-specific surf 37.9 12 0.00026 31.4 0.3 11 376-386 84-95 (96)
70 PRK10525 cytochrome o ubiquino 36.9 22 0.00047 36.2 2.0 40 356-395 40-80 (315)
71 PF05393 Hum_adeno_E3A: Human 35.5 53 0.0011 27.4 3.6 21 379-399 50-72 (94)
72 PF14991 MLANA: Protein melan- 35.4 11 0.00024 32.8 -0.4 25 362-386 27-51 (118)
73 PRK01530 hypothetical protein; 34.6 30 0.00064 29.7 2.1 33 269-305 56-88 (105)
74 TIGR03063 srtB_target sortase 33.1 42 0.00091 22.3 2.2 19 365-386 11-29 (29)
75 PF11669 WBP-1: WW domain-bind 32.7 38 0.00083 28.7 2.5 13 374-386 34-46 (102)
76 TIGR02866 CoxB cytochrome c ox 31.6 49 0.0011 31.0 3.4 25 365-389 18-42 (201)
77 PF15330 SIT: SHP2-interacting 31.1 71 0.0015 27.4 3.9 33 360-393 3-35 (107)
78 PF13703 PepSY_TM_2: PepSY-ass 30.9 56 0.0012 26.4 3.2 29 368-396 24-52 (88)
79 PRK05090 hypothetical protein; 29.9 42 0.0009 28.3 2.3 34 256-289 35-69 (95)
80 PRK09459 pspG phage shock prot 29.4 70 0.0015 25.9 3.3 19 376-394 55-73 (76)
81 TIGR01167 LPXTG_anchor LPXTG-m 29.2 54 0.0012 21.5 2.3 10 378-387 24-33 (34)
82 PF06305 DUF1049: Protein of u 28.7 57 0.0012 24.8 2.7 17 360-376 18-34 (68)
83 PF03631 Virul_fac_BrkB: Virul 28.0 56 0.0012 31.3 3.2 30 344-373 99-128 (260)
84 cd00303 retropepsin_like Retro 27.8 1.1E+02 0.0023 21.9 4.1 21 68-88 11-31 (92)
85 PF13807 GNVR: G-rich domain o 27.7 95 0.0021 24.7 4.0 54 319-374 21-74 (82)
86 PF01282 Ribosomal_S24e: Ribos 27.3 2.6E+02 0.0056 22.8 6.5 66 257-324 3-71 (84)
87 PF06365 CD34_antigen: CD34/Po 27.0 1.9E+02 0.0041 27.7 6.4 104 271-388 25-130 (202)
88 PF12191 stn_TNFRSF12A: Tumour 26.6 21 0.00047 31.6 -0.0 26 370-397 90-115 (129)
89 PRK00084 ispF 2-C-methyl-D-ery 25.9 1.3E+02 0.0028 27.8 4.8 45 251-295 94-138 (159)
90 cd00554 MECDP_synthase MECDP_s 25.6 1.4E+02 0.003 27.4 5.0 45 251-295 91-135 (153)
91 PF11353 DUF3153: Protein of u 25.5 70 0.0015 30.2 3.3 10 341-350 162-171 (209)
92 PF11884 DUF3404: Domain of un 25.5 67 0.0015 31.9 3.2 75 301-389 184-258 (262)
93 PF02009 Rifin_STEVOR: Rifin/s 25.2 62 0.0013 32.7 3.0 17 81-97 33-49 (299)
94 TIGR01433 CyoA cytochrome o ub 25.0 50 0.0011 31.9 2.2 29 360-388 32-60 (226)
95 PF00957 Synaptobrevin: Synapt 24.7 59 0.0013 26.2 2.2 24 350-373 58-81 (89)
96 PF13172 PepSY_TM_1: PepSY-ass 23.8 84 0.0018 21.0 2.5 31 351-383 2-32 (34)
97 PF13131 DUF3951: Protein of u 23.8 76 0.0017 23.8 2.4 36 362-400 9-44 (53)
98 PF08098 ATX_III: Anemonia sul 23.2 39 0.00084 21.7 0.7 8 3-10 11-18 (27)
99 PHA02898 virion envelope prote 23.2 1.2E+02 0.0025 25.4 3.6 82 310-406 8-92 (92)
100 PF06679 DUF1180: Protein of u 22.8 1.1E+02 0.0024 28.3 3.9 25 385-409 121-145 (163)
101 PF07589 VPEP: PEP-CTERM motif 22.7 96 0.0021 19.7 2.4 8 370-377 11-18 (25)
102 PLN02862 2-C-methyl-D-erythrit 22.4 1.6E+02 0.0034 28.5 4.9 45 251-295 151-195 (216)
103 PF11119 DUF2633: Protein of u 21.8 1.6E+02 0.0035 22.8 3.9 32 375-407 28-59 (59)
104 TIGR00151 ispF 2C-methyl-D-ery 21.7 1.7E+02 0.0038 26.8 4.9 48 245-294 87-134 (155)
105 PF02300 Fumarate_red_C: Fumar 21.5 1.1E+02 0.0024 27.3 3.4 13 348-360 9-21 (129)
106 cd05470 pepsin_retropepsin_lik 20.6 76 0.0016 25.8 2.2 17 68-84 13-29 (109)
107 TIGR03503 conserved hypothetic 20.4 26 0.00057 36.5 -0.8 21 364-387 353-373 (374)
108 PF12877 DUF3827: Domain of un 20.3 3E+02 0.0065 30.9 7.0 106 284-395 190-303 (684)
109 PRK01310 hypothetical protein; 20.0 84 0.0018 26.9 2.3 35 256-290 41-76 (104)
No 1
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.94 E-value=2.9e-26 Score=206.95 Aligned_cols=154 Identities=33% Similarity=0.630 Sum_probs=119.5
Q ss_pred cEEEEEeEEEECCEEeecCCccc---cCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhhccccc-CCCCCCccccCCC
Q 015256 41 YYNIELKELRVAGKPLKVSPRIF---DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIR-GPDPNYDDICFSG 116 (410)
Q Consensus 41 yY~V~L~gI~Vgg~~l~l~~~~f---~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~~~~~~-g~~~~~~~~Cy~~ 116 (410)
+|.|+|++|.||++++.+++..| ++..++||||||++|+||+++|++++++|.+++....... ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 59999999999999999998877 4678999999999999999999999999999987432110 1122457899987
Q ss_pred CccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEc---CCCCeEEcHHHhhcEEEEEeCCCCEEE
Q 015256 117 AGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQN---SDSTTLLGGIVVRNTLVTYDRGNDKVG 193 (410)
Q Consensus 117 s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s---~~~~~ILG~~Fmr~~yVVFD~en~rIG 193 (410)
....-+.....+|+|+|+|.+|.+++|++++|++..+ ++.+|+++... .++..|||..+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~--~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS--PGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC--TTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeecc--CCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 6621112336899999999989999999999999987 47899999998 378999999999999999999999999
Q ss_pred EEe
Q 015256 194 FWK 196 (410)
Q Consensus 194 FA~ 196 (410)
|++
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 2
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=99.93 E-value=8.2e-25 Score=214.55 Aligned_cols=168 Identities=27% Similarity=0.489 Sum_probs=129.4
Q ss_pred eeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhhcccc
Q 015256 23 YGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRI 102 (410)
Q Consensus 23 ~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~~~~~ 102 (410)
.|++.|+|+... .....+|.|+|++|.||++.+.+++... ....+|||||||+++||+++|++|.+++.++.....+.
T Consensus 130 ~g~l~~~pv~~~-~~~~~~y~v~l~~i~vg~~~~~~~~~~~-~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~ 207 (299)
T cd05472 130 PAGASFTPMLSN-PRVPTFYYVGLTGISVGGRRLPIPPASF-GAGGVIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRA 207 (299)
T ss_pred CCCceECCCccC-CCCCCeEEEeeEEEEECCEECCCCcccc-CCCCeEEeCCCcceecCHHHHHHHHHHHHHHhccCCCC
Confidence 789999998321 1124699999999999999987643212 35689999999999999999999999998876422211
Q ss_pred cCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC--CCCeEEcHHHhhc
Q 015256 103 RGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS--DSTTLLGGIVVRN 180 (410)
Q Consensus 103 ~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~--~~~~ILG~~Fmr~ 180 (410)
.+ ....+.||+... .. ...+|+|+|+|.+|.+++|++++|++.... .+..|+++.... .+.+|||+.|||+
T Consensus 208 ~~--~~~~~~C~~~~~---~~-~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~-~~~~C~~~~~~~~~~~~~ilG~~fl~~ 280 (299)
T cd05472 208 PG--FSILDTCYDLSG---FR-SVSVPTVSLHFQGGADVELDASGVLYPVDD-SSQVCLAFAGTSDDGGLSIIGNVQQQT 280 (299)
T ss_pred CC--CCCCCccCcCCC---Cc-CCccCCEEEEECCCCEEEeCcccEEEEecC-CCCEEEEEeCCCCCCCCEEEchHHccc
Confidence 11 122346986432 11 247999999997689999999999994332 467999877653 4679999999999
Q ss_pred EEEEEeCCCCEEEEEecCC
Q 015256 181 TLVTYDRGNDKVGFWKTNC 199 (410)
Q Consensus 181 ~yVVFD~en~rIGFA~s~C 199 (410)
+|+|||++++|||||+++|
T Consensus 281 ~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 281 FRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred eEEEEECCCCEEeEecCCC
Confidence 9999999999999999999
No 3
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=99.93 E-value=6e-25 Score=222.89 Aligned_cols=169 Identities=21% Similarity=0.449 Sum_probs=132.6
Q ss_pred eeeeeEEccCcCCC-CCCcEEEEEeEEEECCEEeecCCccc----cCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhh
Q 015256 24 GILPFRPFPQFLAG-NSPYYNIELKELRVAGKPLKVSPRIF----DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHV 98 (410)
Q Consensus 24 G~~~~vPv~~~~~~-~~~yY~V~L~gI~Vgg~~l~l~~~~f----~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~ 98 (410)
|.+.|+|+.. .+ ...+|.|+|++|.||++++.+++..+ ++..++||||||++|+||+++|++|.++|.+++..
T Consensus 184 ~~~~~tPl~~--~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~ 261 (362)
T cd05489 184 KSLSYTPLLT--NPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATAR 261 (362)
T ss_pred CCcccccccc--CCCCCCceEEEEEEEEECCEECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcc
Confidence 6788999831 11 24799999999999999998765433 24568999999999999999999999999988764
Q ss_pred cccccCCCCCCccccCCCCccccccccCCCCeEEEEECC-CeEEEeCCCccEEEEcccCCceEEEEEEcC---CCCeEEc
Q 015256 99 LKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGN-GQKLTLSPENYLFRHMKVSGAYCLGIFQNS---DSTTLLG 174 (410)
Q Consensus 99 ~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~g-G~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~---~~~~ILG 174 (410)
........ ...+.||+.....+.+....+|+|+|+|.+ |.+++|+|++|+++... +..|+++.... .+.+|||
T Consensus 262 ~~~~~~~~-~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~l~~~ny~~~~~~--~~~Cl~f~~~~~~~~~~~IlG 338 (362)
T cd05489 262 IPRVPAAA-VFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWTIFGANSMVQVKG--GVACLAFVDGGSEPRPAVVIG 338 (362)
T ss_pred cCcCCCCC-CCcCccccCCCcCCcccccccceEEEEEeCCCeEEEEcCCceEEEcCC--CcEEEEEeeCCCCCCceEEEe
Confidence 32221111 224799986544333323579999999976 79999999999998653 67899887654 3478999
Q ss_pred HHHhhcEEEEEeCCCCEEEEEec
Q 015256 175 GIVVRNTLVTYDRGNDKVGFWKT 197 (410)
Q Consensus 175 ~~Fmr~~yVVFD~en~rIGFA~s 197 (410)
+.|||++|++||++++||||+++
T Consensus 339 ~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 339 GHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred eheecceEEEEECCCCEeecccC
Confidence 99999999999999999999975
No 4
>PLN03146 aspartyl protease family protein; Provisional
Probab=99.90 E-value=3.3e-23 Score=214.71 Aligned_cols=162 Identities=22% Similarity=0.438 Sum_probs=129.2
Q ss_pred eeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCcccc--CCCcEEEecCCcceecCHHHHHHHHHHHHHhhhhccccc
Q 015256 26 LPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFD--GGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIR 103 (410)
Q Consensus 26 ~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~--~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~~~~~~ 103 (410)
+.|+|+. +.....+|.|+|++|.||++.+.++...|. +..++|||||||+|+||+++|++++++|.+++.... ..
T Consensus 267 ~~~tPl~--~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~-~~ 343 (431)
T PLN03146 267 VVSTPLV--SKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGER-VS 343 (431)
T ss_pred ceEcccc--cCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhcccc-CC
Confidence 6777772 112357999999999999999987665442 345799999999999999999999999998875321 11
Q ss_pred CCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcCCCCeEEcHHHhhcEEE
Q 015256 104 GPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLV 183 (410)
Q Consensus 104 g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~~~~~ILG~~Fmr~~yV 183 (410)
.. ...++.||+... . ..+|+|+|+| +|.++.|++++|++.... +.+|+++... .+.+|||+.|||++||
T Consensus 344 ~~-~~~~~~C~~~~~----~--~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~--~~~Cl~~~~~-~~~~IlG~~~q~~~~v 412 (431)
T PLN03146 344 DP-QGLLSLCYSSTS----D--IKLPIITAHF-TGADVKLQPLNTFVKVSE--DLVCFAMIPT-SSIAIFGNLAQMNFLV 412 (431)
T ss_pred CC-CCCCCccccCCC----C--CCCCeEEEEE-CCCeeecCcceeEEEcCC--CcEEEEEecC-CCceEECeeeEeeEEE
Confidence 11 124678997432 1 3689999999 589999999999997653 6789987754 5579999999999999
Q ss_pred EEeCCCCEEEEEecCCCc
Q 015256 184 TYDRGNDKVGFWKTNCSE 201 (410)
Q Consensus 184 VFD~en~rIGFA~s~C~~ 201 (410)
+||++++||||++.+|+.
T Consensus 413 vyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 413 GYDLESKTVSFKPTDCTK 430 (431)
T ss_pred EEECCCCEEeeecCCcCc
Confidence 999999999999999975
No 5
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=99.89 E-value=8.7e-23 Score=206.18 Aligned_cols=174 Identities=23% Similarity=0.387 Sum_probs=129.5
Q ss_pred CCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhh
Q 015256 19 SSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHV 98 (410)
Q Consensus 19 ~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~ 98 (410)
.+.+.|++.|+|+ .+..+|.|++++|.||++.+.+++..++ ...+|||||||+++||+++|++|.+++.++...
T Consensus 170 ~~~~~g~l~~~p~-----~~~~~~~v~l~~i~vg~~~~~~~~~~~~-~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~ 243 (364)
T cd05473 170 PSLYKGDIWYTPI-----REEWYYEVIILKLEVGGQSLNLDCKEYN-YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI 243 (364)
T ss_pred HhhcCCCceEEec-----CcceeEEEEEEEEEECCEeccccccccc-CccEEEeCCCcceeCCHHHHHHHHHHHHhhccc
Confidence 4567899999999 5678999999999999999876544332 246999999999999999999999999887531
Q ss_pred cccccCC-CCCCccccCCCCccccccccCCCCeEEEEECCC-----eEEEeCCCccEEEEcc-cCCceEEEEEEc-CCCC
Q 015256 99 LKRIRGP-DPNYDDICFSGAGRDVSELSKTFPQVDMVFGNG-----QKLTLSPENYLFRHMK-VSGAYCLGIFQN-SDST 170 (410)
Q Consensus 99 ~~~~~g~-~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG-----~t~tI~p~~Yl~~~~~-~~~~~Cl~i~~s-~~~~ 170 (410)
+..... ...+...|++....+ ...+|+|+|+|.++ .+++|+|++|+..... .....|+++... ..+.
T Consensus 244 -~~~~~~~~~~~~~~C~~~~~~~----~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~ 318 (364)
T cd05473 244 -EDFPDGFWLGSQLACWQKGTTP----WEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNG 318 (364)
T ss_pred -ccCCccccCcceeecccccCch----HhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCCCcceeeEEeeecCCCc
Confidence 111000 001124677532211 13699999999642 4789999999986432 124689864332 3567
Q ss_pred eEEcHHHhhcEEEEEeCCCCEEEEEecCCCccc
Q 015256 171 TLLGGIVVRNTLVTYDRGNDKVGFWKTNCSELW 203 (410)
Q Consensus 171 ~ILG~~Fmr~~yVVFD~en~rIGFA~s~C~~~~ 203 (410)
+|||+.|||++|+|||++++|||||+++|.+..
T Consensus 319 ~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~ 351 (364)
T cd05473 319 TVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHD 351 (364)
T ss_pred eEEeeeeEcceEEEEECCCCEEeeEeccccccc
Confidence 999999999999999999999999999998754
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=99.88 E-value=3.7e-22 Score=198.19 Aligned_cols=152 Identities=23% Similarity=0.405 Sum_probs=119.2
Q ss_pred CCCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhh
Q 015256 18 HSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETH 97 (410)
Q Consensus 18 ~~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~ 97 (410)
+.+.+.|++.|+|+ .+..+|.|++++|.||++.... .....+||||||+++++|++++++|.+++.+.
T Consensus 168 d~~~~~g~l~~~~~-----~~~~~w~v~l~~i~vg~~~~~~-----~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-- 235 (325)
T cd05490 168 DPKYYTGDLHYVNV-----TRKAYWQIHMDQVDVGSGLTLC-----KGGCEAIVDTGTSLITGPVEEVRALQKAIGAV-- 235 (325)
T ss_pred CHHHcCCceEEEEc-----CcceEEEEEeeEEEECCeeeec-----CCCCEEEECCCCccccCCHHHHHHHHHHhCCc--
Confidence 34556799999999 5678999999999999874321 13468999999999999999999999888532
Q ss_pred hcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC------CCCe
Q 015256 98 VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS------DSTT 171 (410)
Q Consensus 98 ~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~------~~~~ 171 (410)
... ...+...|. +. ..+|+|+|+| +|+.|+|+|++|+++........|++.+... ++.+
T Consensus 236 --~~~---~~~~~~~C~--------~~-~~~P~i~f~f-gg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 300 (325)
T cd05490 236 --PLI---QGEYMIDCE--------KI-PTLPVISFSL-GGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPPAGPLW 300 (325)
T ss_pred --ccc---CCCEEeccc--------cc-ccCCCEEEEE-CCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCCCCceE
Confidence 111 112334454 32 4689999999 7999999999999976543346899766531 4579
Q ss_pred EEcHHHhhcEEEEEeCCCCEEEEEe
Q 015256 172 LLGGIVVRNTLVTYDRGNDKVGFWK 196 (410)
Q Consensus 172 ILG~~Fmr~~yVVFD~en~rIGFA~ 196 (410)
|||+.|||++|+|||++++|||||+
T Consensus 301 ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 301 ILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEChHhheeeEEEEEcCCcEeeccC
Confidence 9999999999999999999999985
No 7
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=99.88 E-value=6.2e-22 Score=196.99 Aligned_cols=153 Identities=22% Similarity=0.424 Sum_probs=123.1
Q ss_pred CCCCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhh
Q 015256 17 DHSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKET 96 (410)
Q Consensus 17 ~~~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~ 96 (410)
.+.+.+.|++.|+|+ .+..+|.|+++++.||++.+..+ .+..+||||||++++||.++|+++.+++.++.
T Consensus 168 ~d~~~y~g~l~~~~~-----~~~~~w~v~l~~i~vg~~~~~~~-----~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~ 237 (326)
T cd05487 168 SDPQHYQGDFHYINT-----SKTGFWQIQMKGVSVGSSTLLCE-----DGCTAVVDTGASFISGPTSSISKLMEALGAKE 237 (326)
T ss_pred cChhhccCceEEEEC-----CcCceEEEEecEEEECCEEEecC-----CCCEEEECCCccchhCcHHHHHHHHHHhCCcc
Confidence 346678899999999 56789999999999999987532 24579999999999999999999988885332
Q ss_pred hhcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC------CCC
Q 015256 97 HVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS------DST 170 (410)
Q Consensus 97 ~~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~------~~~ 170 (410)
. ...+...|. +. ..+|+|+|+| +|.+++|++++|+++..+..+..|+..+... ++.
T Consensus 238 ~--------~~~y~~~C~--------~~-~~~P~i~f~f-gg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~ 299 (326)
T cd05487 238 R--------LGDYVVKCN--------EV-PTLPDISFHL-GGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIPPPTGPL 299 (326)
T ss_pred c--------CCCEEEecc--------cc-CCCCCEEEEE-CCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCCCCCCCe
Confidence 1 112334453 33 4689999999 7999999999999986544467898777541 357
Q ss_pred eEEcHHHhhcEEEEEeCCCCEEEEEec
Q 015256 171 TLLGGIVVRNTLVTYDRGNDKVGFWKT 197 (410)
Q Consensus 171 ~ILG~~Fmr~~yVVFD~en~rIGFA~s 197 (410)
+|||+.|||++|+|||++++|||||++
T Consensus 300 ~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 300 WVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 999999999999999999999999974
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=99.87 E-value=6.2e-22 Score=196.04 Aligned_cols=150 Identities=29% Similarity=0.521 Sum_probs=118.4
Q ss_pred CCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhh
Q 015256 19 SSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHV 98 (410)
Q Consensus 19 ~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~ 98 (410)
.+.+.|++.|+|+ .+..+|.|++++|.||++.+..+ .+..+||||||++++||++++++|.+++.+..
T Consensus 161 ~~~~~g~l~~~pi-----~~~~~w~v~l~~i~v~g~~~~~~-----~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~-- 228 (316)
T cd05486 161 TSRFSGQLNWVPV-----TVQGYWQIQLDNIQVGGTVIFCS-----DGCQAIVDTGTSLITGPSGDIKQLQNYIGATA-- 228 (316)
T ss_pred HHHcccceEEEEC-----CCceEEEEEeeEEEEecceEecC-----CCCEEEECCCcchhhcCHHHHHHHHHHhCCcc--
Confidence 4567799999999 56789999999999999876432 34689999999999999999999977774321
Q ss_pred cccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC------CCCeE
Q 015256 99 LKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS------DSTTL 172 (410)
Q Consensus 99 ~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~------~~~~I 172 (410)
.+..+...| +.. ..+|+|+|+| +|+.++|+|++|++.....+...|++.+... ++.+|
T Consensus 229 ------~~~~~~~~C--------~~~-~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~I 292 (316)
T cd05486 229 ------TDGEYGVDC--------STL-SLMPSVTFTI-NGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWI 292 (316)
T ss_pred ------cCCcEEEec--------ccc-ccCCCEEEEE-CCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEE
Confidence 011222344 332 4699999999 7999999999999875332356899776542 35799
Q ss_pred EcHHHhhcEEEEEeCCCCEEEEEe
Q 015256 173 LGGIVVRNTLVTYDRGNDKVGFWK 196 (410)
Q Consensus 173 LG~~Fmr~~yVVFD~en~rIGFA~ 196 (410)
||+.|||++|+|||.+++|||||+
T Consensus 293 LGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 293 LGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EchHHhcceEEEEeCCCCEeeccC
Confidence 999999999999999999999985
No 9
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=99.87 E-value=1.2e-21 Score=194.52 Aligned_cols=141 Identities=24% Similarity=0.446 Sum_probs=114.3
Q ss_pred CCCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhh
Q 015256 18 HSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETH 97 (410)
Q Consensus 18 ~~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~ 97 (410)
+.+.+.|++.|+|+ .+..||.|+++++.||++.+..++ ....+||||||++++||++++++|.
T Consensus 171 d~~~~~g~l~~~pv-----~~~~~w~v~l~~i~v~g~~~~~~~----~~~~aivDTGTs~~~lP~~~~~~i~-------- 233 (317)
T cd06098 171 DPKHFKGEHTYVPV-----TRKGYWQFEMGDVLIGGKSTGFCA----GGCAAIADSGTSLLAGPTTIVTQIN-------- 233 (317)
T ss_pred ChhhcccceEEEec-----CcCcEEEEEeCeEEECCEEeeecC----CCcEEEEecCCcceeCCHHHHHhhh--------
Confidence 35567899999999 567899999999999999876532 3467999999999999998776552
Q ss_pred hcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC------CCCe
Q 015256 98 VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS------DSTT 171 (410)
Q Consensus 98 ~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~------~~~~ 171 (410)
+...|+. . ..+|+|+|+| +|+.|+|+|++|+++..+.....|++.+... ++.+
T Consensus 234 -----------~~~~C~~--------~-~~~P~i~f~f-~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 292 (317)
T cd06098 234 -----------SAVDCNS--------L-SSMPNVSFTI-GGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLW 292 (317)
T ss_pred -----------ccCCccc--------c-ccCCcEEEEE-CCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeE
Confidence 1234652 2 3689999999 7999999999999986543456899876531 3479
Q ss_pred EEcHHHhhcEEEEEeCCCCEEEEEe
Q 015256 172 LLGGIVVRNTLVTYDRGNDKVGFWK 196 (410)
Q Consensus 172 ILG~~Fmr~~yVVFD~en~rIGFA~ 196 (410)
|||+.|||++|+|||++|+|||||+
T Consensus 293 IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 293 ILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EechHHhcccEEEEeCCCCEEeecC
Confidence 9999999999999999999999985
No 10
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=99.87 E-value=1.3e-21 Score=193.83 Aligned_cols=148 Identities=24% Similarity=0.462 Sum_probs=120.1
Q ss_pred CCCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhh
Q 015256 18 HSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETH 97 (410)
Q Consensus 18 ~~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~ 97 (410)
+.+.+.|++.|+|+ ....+|.|+++++.|||+.+... .+..+||||||++++||+++|++|.+++.....
T Consensus 168 d~~~~~g~l~~~p~-----~~~~~w~v~l~~v~v~g~~~~~~-----~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~ 237 (317)
T cd05478 168 DPSYYTGSLNWVPV-----TAETYWQITVDSVTINGQVVACS-----GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN 237 (317)
T ss_pred CHHHccCceEEEEC-----CCCcEEEEEeeEEEECCEEEccC-----CCCEEEECCCchhhhCCHHHHHHHHHHhCCccc
Confidence 34567899999999 56789999999999999987532 346899999999999999999999988854321
Q ss_pred hcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC--CCCeEEcH
Q 015256 98 VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS--DSTTLLGG 175 (410)
Q Consensus 98 ~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~--~~~~ILG~ 175 (410)
....+...|. .. ..+|.|+|+| +|++++|+|++|+.+. ...|++.+... .+.+|||+
T Consensus 238 -------~~~~~~~~C~--------~~-~~~P~~~f~f-~g~~~~i~~~~y~~~~----~~~C~~~~~~~~~~~~~IlG~ 296 (317)
T cd05478 238 -------QNGEMVVNCS--------SI-SSMPDVVFTI-NGVQYPLPPSAYILQD----QGSCTSGFQSMGLGELWILGD 296 (317)
T ss_pred -------cCCcEEeCCc--------Cc-ccCCcEEEEE-CCEEEEECHHHheecC----CCEEeEEEEeCCCCCeEEech
Confidence 0112223454 33 3689999999 7999999999999764 56899877664 36899999
Q ss_pred HHhhcEEEEEeCCCCEEEEEe
Q 015256 176 IVVRNTLVTYDRGNDKVGFWK 196 (410)
Q Consensus 176 ~Fmr~~yVVFD~en~rIGFA~ 196 (410)
.|||++|+|||++|+|||||+
T Consensus 297 ~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 297 VFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred HHhcceEEEEeCCCCEEeecC
Confidence 999999999999999999985
No 11
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=99.87 E-value=1.7e-21 Score=188.34 Aligned_cols=132 Identities=38% Similarity=0.740 Sum_probs=111.1
Q ss_pred ceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccc----cCCCcEEEecCCcceecCHHHHHHHHHHHHHhhh
Q 015256 22 RYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIF----DGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETH 97 (410)
Q Consensus 22 ~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f----~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~ 97 (410)
+.|++.|+|+... .....+|.|+|++|.||++.+.+++..+ +....+||||||++++||+++|
T Consensus 129 ~~~~l~~~p~~~~-~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~~------------ 195 (265)
T cd05476 129 GGSGVVYTPLVKN-PANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPAY------------ 195 (265)
T ss_pred cCCCceEeecccC-CCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCcccc------------
Confidence 7799999998311 0136799999999999999886543221 2457899999999999999887
Q ss_pred hcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC-CCCeEEcHH
Q 015256 98 VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS-DSTTLLGGI 176 (410)
Q Consensus 98 ~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~-~~~~ILG~~ 176 (410)
|+|+|+|++|.++.+++++|+.... ++..|+++.... .+.+|||+.
T Consensus 196 -------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~~~~~~~~~~~ilG~~ 242 (265)
T cd05476 196 -------------------------------PDLTLHFDGGADLELPPENYFVDVG--EGVVCLAILSSSSGGVSILGNI 242 (265)
T ss_pred -------------------------------CCEEEEECCCCEEEeCcccEEEECC--CCCEEEEEecCCCCCcEEEChh
Confidence 7899999669999999999999644 467999988764 778999999
Q ss_pred HhhcEEEEEeCCCCEEEEEecCC
Q 015256 177 VVRNTLVTYDRGNDKVGFWKTNC 199 (410)
Q Consensus 177 Fmr~~yVVFD~en~rIGFA~s~C 199 (410)
|||++|++||++++|||||+++|
T Consensus 243 fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 243 QQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred hcccEEEEEECCCCEEeeecCCC
Confidence 99999999999999999999999
No 12
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7e-21 Score=195.11 Aligned_cols=168 Identities=36% Similarity=0.679 Sum_probs=135.1
Q ss_pred CCCCCceeeeeeEEccCcCCCCCC--cEEEEEeEEEECCEEeecCCccccC-CCcEEEecCCcceecCHHHHHHHHHHHH
Q 015256 17 DHSSTRYGILPFRPFPQFLAGNSP--YYNIELKELRVAGKPLKVSPRIFDG-GHGTVLDSGTTYAYLPGHAFAAFKDALI 93 (410)
Q Consensus 17 ~~~s~~~G~~~~vPv~~~~~~~~~--yY~V~L~gI~Vgg~~l~l~~~~f~~-~~~aIIDSGTT~t~LP~~vy~aIi~aI~ 93 (410)
.+.+.+.|.+.|+|+ .+.. ||.|++++|.||++. .+++..+.. ..++|+||||++++||+++|++|+++|.
T Consensus 222 ~d~~~~~~~l~~tPl-----~~~~~~~y~v~l~~I~vgg~~-~~~~~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~ 295 (398)
T KOG1339|consen 222 VDSSHYTGSLTYTPL-----LSNPSTYYQVNLDGISVGGKR-PIGSSLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIG 295 (398)
T ss_pred CcccCcCCceEEEee-----ccCCCccEEEEEeEEEECCcc-CCCcceEecCCCCEEEECCcceeeccHHHHHHHHHHHH
Confidence 445557788999999 4444 999999999999977 555555554 4889999999999999999999999998
Q ss_pred HhhhhcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcCC--CCe
Q 015256 94 KETHVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSD--STT 171 (410)
Q Consensus 94 ~~~~~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~~--~~~ 171 (410)
++.. . ......+...|+...... ..+|.|+|+|.+|+.|.+++++|+++...+... |++.+...+ ..|
T Consensus 296 ~~~~-~---~~~~~~~~~~C~~~~~~~-----~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~~~~ 365 (398)
T KOG1339|consen 296 AEVS-V---VGTDGEYFVPCFSISTSG-----VKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSGPLW 365 (398)
T ss_pred hhee-c---cccCCceeeecccCCCCc-----ccCCcEEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCCceE
Confidence 8741 0 112224567999765432 359999999977999999999999988752222 999998763 489
Q ss_pred EEcHHHhhcEEEEEeCC-CCEEEEEe--cCCC
Q 015256 172 LLGGIVVRNTLVTYDRG-NDKVGFWK--TNCS 200 (410)
Q Consensus 172 ILG~~Fmr~~yVVFD~e-n~rIGFA~--s~C~ 200 (410)
|||+.||++++++||+. ++||||++ ..|.
T Consensus 366 ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 366 ILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 99999999999999999 99999999 6775
No 13
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=99.86 E-value=2.2e-21 Score=193.23 Aligned_cols=130 Identities=25% Similarity=0.569 Sum_probs=108.1
Q ss_pred eeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhhccccc
Q 015256 24 GILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIR 103 (410)
Q Consensus 24 G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~~~~~~ 103 (410)
|++.|+|+ .+..+|.|++++|.||++..... ...+..+|||||||+++||+++|++|.+++
T Consensus 197 ~~~~~~p~-----~~~~~y~v~l~~i~vg~~~~~~~---~~~~~~aivDSGTs~~~lp~~~~~~l~~~~----------- 257 (326)
T cd06096 197 SKIVWTPI-----TRKYYYYVKLEGLSVYGTTSNSG---NTKGLGMLVDSGSTLSHFPEDLYNKINNFF----------- 257 (326)
T ss_pred CCceEEec-----cCCceEEEEEEEEEEccccccee---cccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------
Confidence 78899999 55689999999999999861110 124578999999999999999999985543
Q ss_pred CCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcCCCCeEEcHHHhhcEEE
Q 015256 104 GPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLV 183 (410)
Q Consensus 104 g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~~~~~ILG~~Fmr~~yV 183 (410)
|+|+|.|.+|++++++|++|++.... ..|...+...++.+|||+.|||++|+
T Consensus 258 -------------------------P~i~~~f~~g~~~~i~p~~y~~~~~~---~~c~~~~~~~~~~~ILG~~flr~~y~ 309 (326)
T cd06096 258 -------------------------PTITIIFENNLKIDWKPSSYLYKKES---FWCKGGEKSVSNKPILGASFFKNKQI 309 (326)
T ss_pred -------------------------CcEEEEEcCCcEEEECHHHhccccCC---ceEEEEEecCCCceEEChHHhcCcEE
Confidence 89999996689999999999987642 33555555556789999999999999
Q ss_pred EEeCCCCEEEEEecCCC
Q 015256 184 TYDRGNDKVGFWKTNCS 200 (410)
Q Consensus 184 VFD~en~rIGFA~s~C~ 200 (410)
|||++++|||||+++|.
T Consensus 310 vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 310 IFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEECcCCEEeeEcCCCC
Confidence 99999999999999994
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=99.86 E-value=3.5e-21 Score=192.11 Aligned_cols=150 Identities=20% Similarity=0.440 Sum_probs=119.2
Q ss_pred CCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhh
Q 015256 19 SSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHV 98 (410)
Q Consensus 19 ~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~ 98 (410)
.+.+.|++.|+|+ .+..+|.|+++++.||++.+.. .+..+||||||++++||+++|++|.+++.+...
T Consensus 174 ~~~~~g~l~~~p~-----~~~~~~~v~~~~i~v~~~~~~~------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~- 241 (329)
T cd05485 174 PKHYTGNFTYLPV-----TRKGYWQFKMDSVSVGEGEFCS------GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPI- 241 (329)
T ss_pred HHHcccceEEEEc-----CCceEEEEEeeEEEECCeeecC------CCcEEEEccCCcceeCCHHHHHHHHHHhCCccc-
Confidence 4556799999999 5678999999999999987641 345799999999999999999999888753210
Q ss_pred cccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC------CCCeE
Q 015256 99 LKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS------DSTTL 172 (410)
Q Consensus 99 ~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~------~~~~I 172 (410)
. ...+...|. .. .++|+|+|+| +|++++|+|++|+++....+..+|+..+... ++.+|
T Consensus 242 ---~---~~~~~~~C~--------~~-~~~p~i~f~f-gg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~I 305 (329)
T cd05485 242 ---I---GGEYMVNCS--------AI-PSLPDITFVL-GGKSFSLTGKDYVLKVTQMGQTICLSGFMGIDIPPPAGPLWI 305 (329)
T ss_pred ---c---CCcEEEecc--------cc-ccCCcEEEEE-CCEEeEEChHHeEEEecCCCCCEEeeeEEECcCCCCCCCeEE
Confidence 0 112333453 32 4689999999 7999999999999987654457899766531 35799
Q ss_pred EcHHHhhcEEEEEeCCCCEEEEEe
Q 015256 173 LGGIVVRNTLVTYDRGNDKVGFWK 196 (410)
Q Consensus 173 LG~~Fmr~~yVVFD~en~rIGFA~ 196 (410)
||+.|||++|+|||++++|||||+
T Consensus 306 lG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 306 LGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EchHHhccceEEEeCCCCEEeecC
Confidence 999999999999999999999984
No 15
>PTZ00165 aspartyl protease; Provisional
Probab=99.86 E-value=5.1e-21 Score=200.94 Aligned_cols=147 Identities=18% Similarity=0.354 Sum_probs=118.4
Q ss_pred eeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhhcccc
Q 015256 23 YGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRI 102 (410)
Q Consensus 23 ~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~~~~~ 102 (410)
.|++.|+|+ .+..||.|++++|.||++.+... ..+..+|+||||+++++|+++|++|.+++..
T Consensus 293 ~g~i~~~Pv-----~~~~yW~i~l~~i~vgg~~~~~~----~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~-------- 355 (482)
T PTZ00165 293 GHKIWWFPV-----ISTDYWEIEVVDILIDGKSLGFC----DRKCKAAIDTGSSLITGPSSVINPLLEKIPL-------- 355 (482)
T ss_pred CCceEEEEc-----cccceEEEEeCeEEECCEEeeec----CCceEEEEcCCCccEeCCHHHHHHHHHHcCC--------
Confidence 478999999 67889999999999999887652 2356899999999999999999999887621
Q ss_pred cCCCCCCccccCCCCccccccccCCCCeEEEEECC--C--eEEEeCCCccEEEEc--ccCCceEEEEEEcC------CCC
Q 015256 103 RGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGN--G--QKLTLSPENYLFRHM--KVSGAYCLGIFQNS------DST 170 (410)
Q Consensus 103 ~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~g--G--~t~tI~p~~Yl~~~~--~~~~~~Cl~i~~s~------~~~ 170 (410)
...|. +. ..+|+|+|+|.+ | .+|.++|++|+++.. ...+..|+..+... ++.
T Consensus 356 -------~~~C~--------~~-~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~ 419 (482)
T PTZ00165 356 -------EEDCS--------NK-DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPL 419 (482)
T ss_pred -------ccccc--------cc-ccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCce
Confidence 12454 22 468999999952 2 389999999999742 22457998766532 357
Q ss_pred eEEcHHHhhcEEEEEeCCCCEEEEEecCCCcc
Q 015256 171 TLLGGIVVRNTLVTYDRGNDKVGFWKTNCSEL 202 (410)
Q Consensus 171 ~ILG~~Fmr~~yVVFD~en~rIGFA~s~C~~~ 202 (410)
||||+.|||+||+|||++|+|||||+++|+..
T Consensus 420 ~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 420 FVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred EEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 99999999999999999999999999988753
No 16
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=99.86 E-value=5e-21 Score=189.51 Aligned_cols=150 Identities=20% Similarity=0.464 Sum_probs=118.9
Q ss_pred CCCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhh
Q 015256 18 HSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETH 97 (410)
Q Consensus 18 ~~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~ 97 (410)
+.+.+.|++.|+|+ ....+|.|+++++.||++.+.+.. .+..+||||||++++||+++|++|++++.++..
T Consensus 162 d~~~~~g~l~~~pv-----~~~~~w~v~l~~i~v~g~~~~~~~----~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~ 232 (318)
T cd05477 162 DNNLYTGQIYWTPV-----TSETYWQIGIQGFQINGQATGWCS----QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQD 232 (318)
T ss_pred CHHHcCCceEEEec-----CCceEEEEEeeEEEECCEEecccC----CCceeeECCCCccEECCHHHHHHHHHHhCCccc
Confidence 34567799999999 567899999999999999875421 345799999999999999999999998865432
Q ss_pred hcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC-------CCC
Q 015256 98 VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS-------DST 170 (410)
Q Consensus 98 ~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~-------~~~ 170 (410)
. ...+...|. .. ..+|+|+|+| +|+++.|++++|+... ..+|+..+... ++.
T Consensus 233 ~-------~~~~~~~C~--------~~-~~~p~l~~~f-~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~~ 291 (318)
T cd05477 233 Q-------YGQYVVNCN--------NI-QNLPTLTFTI-NGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQPL 291 (318)
T ss_pred c-------CCCEEEeCC--------cc-ccCCcEEEEE-CCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCce
Confidence 1 112233444 33 4689999999 7899999999999864 45898655421 247
Q ss_pred eEEcHHHhhcEEEEEeCCCCEEEEEec
Q 015256 171 TLLGGIVVRNTLVTYDRGNDKVGFWKT 197 (410)
Q Consensus 171 ~ILG~~Fmr~~yVVFD~en~rIGFA~s 197 (410)
+|||+.|||++|++||++++|||||++
T Consensus 292 ~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 292 WILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred EEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 999999999999999999999999974
No 17
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=99.86 E-value=4.5e-21 Score=186.69 Aligned_cols=160 Identities=20% Similarity=0.285 Sum_probs=122.5
Q ss_pred CCCceeeeeeEEccCcCCC-CCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhh
Q 015256 19 SSTRYGILPFRPFPQFLAG-NSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETH 97 (410)
Q Consensus 19 ~s~~~G~~~~vPv~~~~~~-~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~ 97 (410)
.+.+.|.+.|+|+...... ...+|.|++++|.||++.+..+. ......++|||||++++||+++|++|.+++.+...
T Consensus 132 ~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~--~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~ 209 (295)
T cd05474 132 TAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTL--LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYD 209 (295)
T ss_pred cceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccc--cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEc
Confidence 4567799999999321000 22799999999999998875321 23467899999999999999999999999976543
Q ss_pred hcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcc--cCCceEEEEEEcC-CCCeEEc
Q 015256 98 VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMK--VSGAYCLGIFQNS-DSTTLLG 174 (410)
Q Consensus 98 ~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~--~~~~~Cl~i~~s~-~~~~ILG 174 (410)
. ....+...|+ .. .. |+|+|+| +|.+++|++++|+++... .....|+..+... .+.+|||
T Consensus 210 ~------~~~~~~~~C~--------~~-~~-p~i~f~f-~g~~~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~~~~~iLG 272 (295)
T cd05474 210 S------DEGLYVVDCD--------AK-DD-GSLTFNF-GGATISVPLSDLVLPASTDDGGDGACYLGIQPSTSDYNILG 272 (295)
T ss_pred C------CCcEEEEeCC--------CC-CC-CEEEEEE-CCeEEEEEHHHhEeccccCCCCCCCeEEEEEeCCCCcEEeC
Confidence 1 0113445665 22 23 9999999 689999999999987642 2367897656554 4789999
Q ss_pred HHHhhcEEEEEeCCCCEEEEEec
Q 015256 175 GIVVRNTLVTYDRGNDKVGFWKT 197 (410)
Q Consensus 175 ~~Fmr~~yVVFD~en~rIGFA~s 197 (410)
+.|||++|++||.+++|||||++
T Consensus 273 ~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 273 DTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred hHHhhcEEEEEECCCCEEEeecC
Confidence 99999999999999999999985
No 18
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=99.86 E-value=4.5e-21 Score=190.34 Aligned_cols=146 Identities=23% Similarity=0.497 Sum_probs=116.5
Q ss_pred CCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhh
Q 015256 19 SSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHV 98 (410)
Q Consensus 19 ~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~ 98 (410)
.+.+.|++.|+|+ ....+|.|++++|.||++.+..+ +..++||||||+++||++++++|.+++.+...
T Consensus 169 ~~~~~g~l~~~p~-----~~~~~w~v~l~~i~vg~~~~~~~------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~- 236 (320)
T cd05488 169 ESRFTGKITWLPV-----RRKAYWEVELEKIGLGDEELELE------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS- 236 (320)
T ss_pred HHHcCCceEEEeC-----CcCcEEEEEeCeEEECCEEeccC------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc-
Confidence 4567799999999 45789999999999999887642 35799999999999999999999887743221
Q ss_pred cccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC------CCCeE
Q 015256 99 LKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS------DSTTL 172 (410)
Q Consensus 99 ~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~------~~~~I 172 (410)
....+...| .+. ..+|.|+|+| +|++++|+|++|++.. ...|++.+... ++.+|
T Consensus 237 ------~~~~~~~~C--------~~~-~~~P~i~f~f-~g~~~~i~~~~y~~~~----~g~C~~~~~~~~~~~~~~~~~i 296 (320)
T cd05488 237 ------WNGQYTVDC--------SKV-DSLPDLTFNF-DGYNFTLGPFDYTLEV----SGSCISAFTGMDFPEPVGPLAI 296 (320)
T ss_pred ------cCCcEEeec--------ccc-ccCCCEEEEE-CCEEEEECHHHheecC----CCeEEEEEEECcCCCCCCCeEE
Confidence 011122334 332 3689999999 6999999999999853 35799887642 34799
Q ss_pred EcHHHhhcEEEEEeCCCCEEEEEe
Q 015256 173 LGGIVVRNTLVTYDRGNDKVGFWK 196 (410)
Q Consensus 173 LG~~Fmr~~yVVFD~en~rIGFA~ 196 (410)
||+.|||++|+|||++++|||||+
T Consensus 297 lG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 297 VGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred EchHHhhheEEEEeCCCCEEeecC
Confidence 999999999999999999999985
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=99.83 E-value=6.6e-20 Score=191.07 Aligned_cols=151 Identities=22% Similarity=0.357 Sum_probs=115.8
Q ss_pred CCCCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhh
Q 015256 17 DHSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKET 96 (410)
Q Consensus 17 ~~~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~ 96 (410)
.+.+.+.|++.|+|+ .+..+|.|+++ +.+|.... .+..+|||||||++++|+++++++.+++....
T Consensus 296 iD~~~y~G~L~y~pv-----~~~~yW~I~l~-v~~G~~~~--------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~ 361 (450)
T PTZ00013 296 IEEKFYEGNITYEKL-----NHDLYWQIDLD-VHFGKQTM--------QKANVIVDSGTTTITAPSEFLNKFFANLNVIK 361 (450)
T ss_pred cCccccccceEEEEc-----CcCceEEEEEE-EEECceec--------cccceEECCCCccccCCHHHHHHHHHHhCCee
Confidence 345667899999999 56789999998 66765443 23579999999999999999999888774321
Q ss_pred hhcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC---CCCeEE
Q 015256 97 HVLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS---DSTTLL 173 (410)
Q Consensus 97 ~~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~---~~~~IL 173 (410)
. ...+.+...|+ . ..+|+|+|.| +|.+++|+|++|+......++..|+..+... ++.|||
T Consensus 362 ~------~~~~~y~~~C~--------~--~~lP~i~F~~-~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~~~~~~~~IL 424 (450)
T PTZ00013 362 V------PFLPFYVTTCD--------N--KEMPTLEFKS-ANNTYTLEPEYYMNPLLDVDDTLCMITMLPVDIDDNTFIL 424 (450)
T ss_pred c------CCCCeEEeecC--------C--CCCCeEEEEE-CCEEEEECHHHheehhccCCCCeeEEEEEECCCCCCCEEE
Confidence 1 01112334554 2 3689999999 6899999999999754333456898776543 458999
Q ss_pred cHHHhhcEEEEEeCCCCEEEEEecC
Q 015256 174 GGIVVRNTLVTYDRGNDKVGFWKTN 198 (410)
Q Consensus 174 G~~Fmr~~yVVFD~en~rIGFA~s~ 198 (410)
|+.|||++|+|||++++|||||++.
T Consensus 425 Gd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 425 GDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CHHHhccEEEEEECCCCEEEEEEeC
Confidence 9999999999999999999999863
No 20
>PTZ00147 plasmepsin-1; Provisional
Probab=99.83 E-value=5.7e-20 Score=191.70 Aligned_cols=150 Identities=21% Similarity=0.340 Sum_probs=116.7
Q ss_pred CCCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhh
Q 015256 18 HSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETH 97 (410)
Q Consensus 18 ~~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~ 97 (410)
+.+.+.|++.|+|+ .+..+|.|+++ +.+|+... ....+|||||||++++|+++++++.+++.+...
T Consensus 298 D~~ky~G~l~y~pl-----~~~~~W~V~l~-~~vg~~~~--------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~ 363 (453)
T PTZ00147 298 EERFYEGPLTYEKL-----NHDLYWQVDLD-VHFGNVSS--------EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV 363 (453)
T ss_pred ChhhcCCceEEEEc-----CCCceEEEEEE-EEECCEec--------CceeEEECCCCchhcCCHHHHHHHHHHhCCeec
Confidence 45567899999999 56789999998 57777542 245799999999999999999999988853211
Q ss_pred hcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcC---CCCeEEc
Q 015256 98 VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNS---DSTTLLG 174 (410)
Q Consensus 98 ~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~---~~~~ILG 174 (410)
...+.+...|+. ..+|+|+|.| +|.+++|+|++|+....+.....|++.+... .+.+|||
T Consensus 364 ------~~~~~y~~~C~~----------~~lP~~~f~f-~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~~~~~~~ILG 426 (453)
T PTZ00147 364 ------PFLPLYVTTCNN----------TKLPTLEFRS-PNKVYTLEPEYYLQPIEDIGSALCMLNIIPIDLEKNTFILG 426 (453)
T ss_pred ------CCCCeEEEeCCC----------CCCCeEEEEE-CCEEEEECHHHheeccccCCCcEEEEEEEECCCCCCCEEEC
Confidence 011123345642 3689999999 6899999999999865433356898766543 3589999
Q ss_pred HHHhhcEEEEEeCCCCEEEEEecC
Q 015256 175 GIVVRNTLVTYDRGNDKVGFWKTN 198 (410)
Q Consensus 175 ~~Fmr~~yVVFD~en~rIGFA~s~ 198 (410)
+.|||++|+|||++++|||||++.
T Consensus 427 d~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 427 DPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HHHhccEEEEEECCCCEEEEEEec
Confidence 999999999999999999999874
No 21
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=99.83 E-value=3.3e-20 Score=180.48 Aligned_cols=128 Identities=29% Similarity=0.619 Sum_probs=106.2
Q ss_pred CCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhhc
Q 015256 20 STRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHVL 99 (410)
Q Consensus 20 s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~~ 99 (410)
+.+.|.+.|+|+.. .....+|.|++++|.||++.... ....+||||||++++||+++|
T Consensus 139 ~~~~g~i~ytpl~~--~~~~~~y~v~l~~i~vg~~~~~~------~~~~~ivDTGTt~t~lp~~~y-------------- 196 (273)
T cd05475 139 LVPSSGVTWTPMRR--ESQKKHYSPGPASLLFNGQPTGG------KGLEVVFDSGSSYTYFNAQAY-------------- 196 (273)
T ss_pred CCCCCCeeeccccc--CCCCCeEEEeEeEEEECCEECcC------CCceEEEECCCceEEcCCccc--------------
Confidence 44668899999831 11247999999999999986431 356899999999999999876
Q ss_pred ccccCCCCCCccccCCCCccccccccCCCCeEEEEECCC---eEEEeCCCccEEEEcccCCceEEEEEEcC----CCCeE
Q 015256 100 KRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNG---QKLTLSPENYLFRHMKVSGAYCLGIFQNS----DSTTL 172 (410)
Q Consensus 100 ~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG---~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~----~~~~I 172 (410)
+|+|+|.|.++ ++++|+|++|++... .+..|++++... .+.+|
T Consensus 197 ----------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~--~~~~Cl~~~~~~~~~~~~~~i 246 (273)
T cd05475 197 ----------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE--KGNVCLGILNGSEIGLGNTNI 246 (273)
T ss_pred ----------------------------cccEEEEECCCCceeEEEeCCCceEEEcC--CCCEEEEEecCCCcCCCceEE
Confidence 47899999644 799999999998754 356899998654 25799
Q ss_pred EcHHHhhcEEEEEeCCCCEEEEEecCC
Q 015256 173 LGGIVVRNTLVTYDRGNDKVGFWKTNC 199 (410)
Q Consensus 173 LG~~Fmr~~yVVFD~en~rIGFA~s~C 199 (410)
||+.|||++|++||++++||||++++|
T Consensus 247 lG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 247 IGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ECceEEEeeEEEEECcCCEeCcccCCC
Confidence 999999999999999999999999999
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=99.80 E-value=1.8e-19 Score=175.86 Aligned_cols=152 Identities=28% Similarity=0.528 Sum_probs=124.7
Q ss_pred CCCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhh
Q 015256 18 HSSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETH 97 (410)
Q Consensus 18 ~~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~ 97 (410)
+.+.+.|++.|+|+ ....+|.|.+++|.++++.... .....++|||||++++||.+++++|++++.....
T Consensus 161 d~~~~~g~~~~~~~-----~~~~~w~v~~~~i~i~~~~~~~-----~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~ 230 (317)
T PF00026_consen 161 DPSKYDGDLVWVPL-----VSSGYWSVPLDSISIGGESVFS-----SSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYS 230 (317)
T ss_dssp EGGGEESEEEEEEB-----SSTTTTEEEEEEEEETTEEEEE-----EEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEE
T ss_pred ccccccCceeccCc-----cccccccccccccccccccccc-----ccceeeecccccccccccchhhHHHHhhhccccc
Confidence 46678899999999 5889999999999999993321 1235799999999999999999999999865442
Q ss_pred hcccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEc----C-CCCeE
Q 015256 98 VLKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQN----S-DSTTL 172 (410)
Q Consensus 98 ~~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s----~-~~~~I 172 (410)
. ..+ ..+|+.. ..+|.|+|.| +|.+|+|+|++|+.+........|+..+.. . .+.+|
T Consensus 231 ~--------~~~--------~~~c~~~-~~~p~l~f~~-~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~i 292 (317)
T PF00026_consen 231 D--------GVY--------SVPCNST-DSLPDLTFTF-GGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWI 292 (317)
T ss_dssp C--------SEE--------EEETTGG-GGSEEEEEEE-TTEEEEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEEE
T ss_pred c--------eeE--------EEecccc-cccceEEEee-CCEEEEecchHhcccccccccceeEeeeecccccccCCceE
Confidence 1 112 3345443 4689999999 699999999999999876445689888877 2 67899
Q ss_pred EcHHHhhcEEEEEeCCCCEEEEEec
Q 015256 173 LGGIVVRNTLVTYDRGNDKVGFWKT 197 (410)
Q Consensus 173 LG~~Fmr~~yVVFD~en~rIGFA~s 197 (410)
||..|||++|++||.|++|||||++
T Consensus 293 LG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 293 LGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ecHHHhhceEEEEeCCCCEEEEecC
Confidence 9999999999999999999999985
No 23
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=99.71 E-value=2e-17 Score=160.83 Aligned_cols=119 Identities=22% Similarity=0.389 Sum_probs=91.9
Q ss_pred CCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhh
Q 015256 19 SSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHV 98 (410)
Q Consensus 19 ~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~ 98 (410)
.+.+.|++.|+|+. ....+|.|++++|.||++.... ..+..++|||||+++++|++++++|.+++.....
T Consensus 160 ~~~~~g~l~~~pi~----~~~~~w~v~l~~i~v~~~~~~~-----~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~- 229 (278)
T cd06097 160 ESKYKGEISWTPVD----NSSGFWQFTSTSYTVGGDAPWS-----RSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYY- 229 (278)
T ss_pred hHHcCCceEEEEcc----CCCcEEEEEEeeEEECCcceee-----cCCceEEeecCCchhcCCHHHHHHHHHhCcCCcc-
Confidence 44577999999992 2378999999999999984321 1356899999999999999999999887731110
Q ss_pred cccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcCCCCeEEcHHHh
Q 015256 99 LKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVV 178 (410)
Q Consensus 99 ~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~~~~~ILG~~Fm 178 (410)
+........+|+. .+|+|+|+| .||||+.||
T Consensus 230 ------------~~~~~~~~~~C~~---~~P~i~f~~----------------------------------~~ilGd~fl 260 (278)
T cd06097 230 ------------DSEYGGWVFPCDT---TLPDLSFAV----------------------------------FSILGDVFL 260 (278)
T ss_pred ------------cCCCCEEEEECCC---CCCCEEEEE----------------------------------EEEEcchhh
Confidence 0011112345653 389999998 699999999
Q ss_pred hcEEEEEeCCCCEEEEEe
Q 015256 179 RNTLVTYDRGNDKVGFWK 196 (410)
Q Consensus 179 r~~yVVFD~en~rIGFA~ 196 (410)
|++|+|||++|+|||||+
T Consensus 261 ~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 261 KAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred CceeEEEcCCCceeeecC
Confidence 999999999999999985
No 24
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=99.59 E-value=6.4e-15 Score=141.19 Aligned_cols=122 Identities=30% Similarity=0.540 Sum_probs=93.7
Q ss_pred CCCceeeeeeEEccCcCCCCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHHHHHHHHhhhh
Q 015256 19 SSTRYGILPFRPFPQFLAGNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAFKDALIKETHV 98 (410)
Q Consensus 19 ~s~~~G~~~~vPv~~~~~~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~ 98 (410)
.+.+.|++.|+|+.. ....+|.|.+++|.||++.... -.....++|||||++++||+++|++|.+++.+....
T Consensus 162 ~~~~~~~~~~~p~~~---~~~~~~~v~l~~i~v~~~~~~~----~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~ 234 (283)
T cd05471 162 PSKYTGDLTYTPVVS---NGPGYWQVPLDGISVGGKSVIS----SSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS 234 (283)
T ss_pred ccccCCceEEEecCC---CCCCEEEEEeCeEEECCceeee----cCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc
Confidence 344678999999921 1278999999999999974111 124568999999999999999999999999765531
Q ss_pred cccccCCCCCCccccCCCCccccccccCCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcCCCCeEEcHHHh
Q 015256 99 LKRIRGPDPNYDDICFSGAGRDVSELSKTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVV 178 (410)
Q Consensus 99 ~~~~~g~~~~~~~~Cy~~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~~~~~ILG~~Fm 178 (410)
...|+. ..|... ..+|+|+|+| .+|||+.||
T Consensus 235 -----------~~~~~~---~~~~~~-~~~p~i~f~f----------------------------------~~ilG~~fl 265 (283)
T cd05471 235 -----------SDGGYG---VDCSPC-DTLPDITFTF----------------------------------LWILGDVFL 265 (283)
T ss_pred -----------cCCcEE---EeCccc-CcCCCEEEEE----------------------------------EEEccHhhh
Confidence 112221 122222 5799999999 689999999
Q ss_pred hcEEEEEeCCCCEEEEEe
Q 015256 179 RNTLVTYDRGNDKVGFWK 196 (410)
Q Consensus 179 r~~yVVFD~en~rIGFA~ 196 (410)
|++|++||.++++||||+
T Consensus 266 ~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 266 RNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred hheEEEEeCCCCEEeecC
Confidence 999999999999999985
No 25
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.94 E-value=0.3 Score=42.38 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.9
Q ss_pred CCCeEEcHHHhhcEEEEEeCCCCEEE
Q 015256 168 DSTTLLGGIVVRNTLVTYDRGNDKVG 193 (410)
Q Consensus 168 ~~~~ILG~~Fmr~~yVVFD~en~rIG 193 (410)
.-..|||..||+.+..+.|..+.++-
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~ 123 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLR 123 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEE
Confidence 44679999999999999999998874
No 26
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=94.85 E-value=0.61 Score=40.46 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHH
Q 015256 37 GNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 88 (410)
Q Consensus 37 ~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aI 88 (410)
.+..+|.++ +.|||+++ ..+||||.|.+.++.++.+++
T Consensus 7 ~~~g~~~v~---~~InG~~~-----------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 7 DGDGHFYAT---GRVNGRNV-----------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred cCCCeEEEE---EEECCEEE-----------EEEEECCCCcEEcCHHHHHHc
Confidence 345667654 67899865 369999999999999998876
No 27
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=92.30 E-value=0.69 Score=39.27 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.0
Q ss_pred CCCeEEcHHHhhcEEEEEeCCCCE
Q 015256 168 DSTTLLGGIVVRNTLVTYDRGNDK 191 (410)
Q Consensus 168 ~~~~ILG~~Fmr~~yVVFD~en~r 191 (410)
.+..+||..||+.+-++.|..+.+
T Consensus 83 ~~~~LLG~~~L~~l~l~id~~~~~ 106 (107)
T TIGR03698 83 VDEPLLGTELLEGLGIVIDYRNQG 106 (107)
T ss_pred CCccEecHHHHhhCCEEEehhhCc
Confidence 358899999999999999988765
No 28
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=89.33 E-value=2.7 Score=37.18 Aligned_cols=97 Identities=15% Similarity=0.221 Sum_probs=56.5
Q ss_pred cEEEecCCcceecCHHHHHHHHHHHHHhhhhcccccCCCCCCccccCC-CCccccccccCCCCeEEEEECCCeEEEeCCC
Q 015256 68 GTVLDSGTTYAYLPGHAFAAFKDALIKETHVLKRIRGPDPNYDDICFS-GAGRDVSELSKTFPQVDMVFGNGQKLTLSPE 146 (410)
Q Consensus 68 ~aIIDSGTT~t~LP~~vy~aIi~aI~~~~~~~~~~~g~~~~~~~~Cy~-~s~~~c~~i~~~~PtItf~F~gG~t~tI~p~ 146 (410)
.++||||+|..++..+..+.+.-.+..... . ..... .....|. ...+.+.+.+ +|.++..
T Consensus 34 ~vLiDSGAThsFIs~~~a~~~~l~~~~l~~-----------~-~~V~~~g~~~~~~---~~~~~~~~~i-~g~~~~~--- 94 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKKLGLPLEPLPR-----------P-IVVSAPGGSINCE---GVCPDVPLSI-QGHEFVV--- 94 (135)
T ss_pred EEEEecCCCcEEccHHHHHhcCCEEEEccC-----------e-eEEeccccccccc---ceeeeEEEEE-CCeEEEe---
Confidence 479999999999998887765221110000 0 00000 0001111 2345666666 3444321
Q ss_pred ccEEEEcccCCceEEEEEEcCCCCeEEcHHHhhcEEEEEeCCCCEEEEEe
Q 015256 147 NYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 196 (410)
Q Consensus 147 ~Yl~~~~~~~~~~Cl~i~~s~~~~~ILG~~Fmr~~yVVFD~en~rIGFA~ 196 (410)
+ +.++...+-..|||..+|+.+...-|..+++|-|..
T Consensus 95 d-------------l~vl~l~~~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 95 D-------------LLVLDLGGYDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred e-------------eEEecccceeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 1 122222234689999999999999999999999974
No 29
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=87.45 E-value=0.5 Score=41.50 Aligned_cols=48 Identities=21% Similarity=0.489 Sum_probs=19.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccc--cccCCC
Q 015256 357 RNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVVPEQ--ELQPLQ 409 (410)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 409 (410)
.+...+++|++..+++ +.++-.|+++|+|++....-+| -||. +=.||-
T Consensus 64 ~~i~~Ii~gv~aGvIg-~Illi~y~irR~~Kk~~~~~~p----~P~~~d~~~p~~ 113 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIG-IILLISYCIRRLRKKSSSDVQP----LPEEDDTDVPLS 113 (122)
T ss_dssp TCHHHHHHHHHHHHHH-HHHHHHHHHHHHS-------------------------
T ss_pred cceeehhHHHHHHHHH-HHHHHHHHHHHHhccCCCCCCC----CCCCCCCCCCcc
Confidence 3566777777766644 3445578888888876555444 4554 555553
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=85.25 E-value=1.4 Score=34.66 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=24.6
Q ss_pred EEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHH
Q 015256 49 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 88 (410)
Q Consensus 49 I~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aI 88 (410)
+.|||+.+ .++||||++.+.+..++++.+
T Consensus 3 v~vng~~~-----------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----------EEEEcCCCCcEEECHHHHHHc
Confidence 56788765 479999999999999999886
No 31
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=85.11 E-value=1.2 Score=38.16 Aligned_cols=30 Identities=20% Similarity=0.288 Sum_probs=18.1
Q ss_pred HHHHhhhhhhhhcccccccccccccccccccCCC
Q 015256 376 ILGLWSVWKRRQEASKTYQPVGAVVPEQELQPLQ 409 (410)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (410)
.....+.||.+++..+.++... +++.||++
T Consensus 15 l~asl~~wr~~~rq~k~~~~~~----~~~~~~~E 44 (107)
T PF15330_consen 15 LAASLLAWRMKQRQKKAGQYSE----RRSEQPTE 44 (107)
T ss_pred HHHHHHHHHHHhhhccccCCCC----ccccCCCC
Confidence 3334556776666666665533 67777765
No 32
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=84.66 E-value=0.18 Score=35.78 Aligned_cols=28 Identities=39% Similarity=0.736 Sum_probs=12.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhh-hhhhh
Q 015256 360 VAVVVGIVVTLLLGLSILGLWSV-WKRRQ 387 (410)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 387 (410)
.+|++|+.+.+.+=+.++|++|+ |+||+
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 34455555544444444443333 45453
No 33
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=83.84 E-value=0.34 Score=37.82 Aligned_cols=33 Identities=30% Similarity=0.636 Sum_probs=1.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 015256 360 VAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTY 393 (410)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (410)
-+++.|+++.+++.++.+ +++|+|.|++.+++|
T Consensus 12 aavIaG~Vvgll~ailLI-lf~iyR~rkkdEGSY 44 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLI-LFLIYRMRKKDEGSY 44 (64)
T ss_dssp --------------------------S------S
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCc
Confidence 345556666666665555 889999999999999
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=83.56 E-value=2.4 Score=33.17 Aligned_cols=30 Identities=13% Similarity=0.362 Sum_probs=25.7
Q ss_pred EEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHH
Q 015256 48 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 88 (410)
Q Consensus 48 gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aI 88 (410)
.+.|+|+.+ .+++|||++..+++.+.++.+
T Consensus 12 ~~~I~g~~~-----------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQV-----------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEE-----------EEEEeCCCcceecCHHHHHHh
Confidence 367888776 379999999999999999987
No 35
>PF15050 SCIMP: SCIMP protein
Probab=82.64 E-value=1.4 Score=38.56 Aligned_cols=12 Identities=25% Similarity=1.068 Sum_probs=10.0
Q ss_pred chhhhhhhhhhh
Q 015256 353 TWWQRNLVAVVV 364 (410)
Q Consensus 353 ~~~~~~~~~~~~ 364 (410)
+||..|||.++.
T Consensus 2 ~WWr~nFWiiLA 13 (133)
T PF15050_consen 2 SWWRDNFWIILA 13 (133)
T ss_pred chHHhchHHHHH
Confidence 599999998764
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=80.94 E-value=2.3 Score=34.37 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=26.4
Q ss_pred EEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHH
Q 015256 48 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 88 (410)
Q Consensus 48 gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aI 88 (410)
.+.|||+.+. +++|||++.+.++++.++.+
T Consensus 4 ~~~Ing~~i~-----------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-----------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-----------EEEcCCcceEEeCHHHHHHh
Confidence 4788999875 59999999999999999886
No 37
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=79.66 E-value=3.8 Score=32.37 Aligned_cols=30 Identities=17% Similarity=0.414 Sum_probs=24.4
Q ss_pred EEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHH
Q 015256 48 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 88 (410)
Q Consensus 48 gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aI 88 (410)
.+.||++.+ .++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-----------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-----------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-----------EEEEECCCCcEEcCHHHHHHc
Confidence 467787765 469999999999999887765
No 38
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=79.18 E-value=1.3 Score=44.32 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=27.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhccccccccc
Q 015256 357 RNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPV 396 (410)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (410)
..++.|++|++++.|+-+ ++..++|.|||.++ -|+++
T Consensus 270 ~~~vPIaVG~~La~lvli-vLiaYli~Rrr~~~--gYq~~ 306 (306)
T PF01299_consen 270 SDLVPIAVGAALAGLVLI-VLIAYLIGRRRSRA--GYQSI 306 (306)
T ss_pred cchHHHHHHHHHHHHHHH-HHHhheeEeccccc--ccccC
Confidence 467888888877666653 44588999999887 67653
No 39
>PF15179 Myc_target_1: Myc target protein 1
Probab=70.06 E-value=4.5 Score=37.89 Aligned_cols=36 Identities=28% Similarity=0.575 Sum_probs=28.0
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 015256 355 WQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASK 391 (410)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (410)
|.+-+++..+.++|.|++|.+++ ++|+|.-|.+|+.
T Consensus 18 ~~~lIlaF~vSm~iGLviG~li~-~LltwlSRRRASa 53 (197)
T PF15179_consen 18 WEDLILAFCVSMAIGLVIGALIW-ALLTWLSRRRASA 53 (197)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccc
Confidence 67778888888889999987777 6778876666654
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=69.45 E-value=6.8 Score=31.52 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=24.8
Q ss_pred EEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHH
Q 015256 49 LRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 88 (410)
Q Consensus 49 I~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aI 88 (410)
+.|||+.+. .++|||.+.+.++++.++.+
T Consensus 3 v~InG~~~~-----------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-----------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-----------EEEECCCCeEEECHHHhhhc
Confidence 678888764 59999999999999988775
No 41
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=63.58 E-value=8.4 Score=31.31 Aligned_cols=27 Identities=19% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEECCEEeecCCccccCCCcEEEecCCcceecCHHHH
Q 015256 48 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAF 85 (410)
Q Consensus 48 gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy 85 (410)
.+.++|+.+ .++||||++.+.++.+.+
T Consensus 9 ~v~i~g~~i-----------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI-----------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE-----------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE-----------EEEEecCCCcceeccccc
Confidence 356677766 479999999999997644
No 42
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=59.70 E-value=2.8 Score=38.26 Aligned_cols=31 Identities=32% Similarity=0.541 Sum_probs=20.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhc
Q 015256 357 RNLVAVVVGIVVTLLLGLSILGLWSVWKRRQE 388 (410)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (410)
+-++.|++||-+.++++++++ +|+.++||.+
T Consensus 49 nIVIGvVVGVGg~ill~il~l-vf~~c~r~kk 79 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILAL-VFIFCIRRKK 79 (154)
T ss_pred cEEEEEEecccHHHHHHHHHh-heeEEEeccc
Confidence 347788889888889886666 4444444433
No 43
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=58.48 E-value=8.1 Score=40.16 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=33.6
Q ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Q 015256 348 PQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVVPEQEL 405 (410)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (410)
...+|.||..+...+++.+++.|++| .++|..|-=-|--+...--+==++++.||||
T Consensus 292 ~~r~r~~~~r~~~c~~~~i~~lL~ig-~~~gFv~AttKpL~~v~v~~I~NVlaS~qEL 348 (387)
T PF12751_consen 292 QYRQRSWFSRFASCIYLSILLLLVIG-FAIGFVFATTKPLTDVQVVSIQNVLASEQEL 348 (387)
T ss_pred hhccccHHhhhhHHHHHHHHHHHHHH-HHHHhhhhcCcccccceEEEeeeeeeccceE
Confidence 34678999999888888888766666 4555444322111111111112377888887
No 44
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=58.44 E-value=18 Score=34.67 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=30.7
Q ss_pred CCCCcEEEEEeEEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHH
Q 015256 37 GNSPYYNIELKELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 88 (410)
Q Consensus 37 ~~~~yY~V~L~gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aI 88 (410)
....+|.++ .+|||+.++ .++|||.|...|+++..+.+
T Consensus 101 ~~~GHF~a~---~~VNGk~v~-----------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 101 SRDGHFEAN---GRVNGKKVD-----------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred cCCCcEEEE---EEECCEEEE-----------EEEecCcceeecCHHHHHHh
Confidence 345666644 789999985 49999999999999988876
No 45
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=56.70 E-value=5.3 Score=36.34 Aligned_cols=27 Identities=44% Similarity=0.630 Sum_probs=13.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 015256 360 VAVVVGIVVTLLLGLSILGLWSVWKRR 386 (410)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (410)
++|++||.+-|+|-+.++|..+-||+|
T Consensus 10 v~i~igi~Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 10 VAISIGISLLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHHHHHHHHHHhcceEEEeecc
Confidence 455555444444444445544445443
No 46
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=55.45 E-value=63 Score=26.94 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=16.9
Q ss_pred CCcEEEecCCcceecCHHHHH
Q 015256 66 GHGTVLDSGTTYAYLPGHAFA 86 (410)
Q Consensus 66 ~~~aIIDSGTT~t~LP~~vy~ 86 (410)
+...+||||+-...+|....+
T Consensus 9 ~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 9 GLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CcEEEEeCCCceEeecccccc
Confidence 456799999999999976544
No 47
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=54.02 E-value=12 Score=36.84 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=24.1
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 015256 353 TWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRR 386 (410)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (410)
.||-+|.+-++++.++.++.++++.|. +|++|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 247 (249)
T PRK15348 216 KWLMKYPYQLMLSLTGLLLGVGILIGY--FCLRR 247 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Confidence 699999998888888877777666653 34444
No 48
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=52.69 E-value=24 Score=32.44 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=34.5
Q ss_pred EEEeecccCCCCCcchhHHHHHHHhhcccCcceeEEeeeeec
Q 015256 253 FDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSK 294 (410)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (410)
++..+-...+.|.|+..++-+.||+-|+++.+||.+---|..
T Consensus 94 vd~tii~~~PK~~P~~~amr~~ia~~L~i~~~~invKatT~E 135 (159)
T COG0245 94 VDITIIAQRPKLGPYREAMRANIAELLGIPVDRINVKATTTE 135 (159)
T ss_pred EEEEEEEecCcccchHHHHHHHHHHHhCCCchheEEEEeccC
Confidence 445555589999999999999999999999999987544433
No 49
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=52.19 E-value=17 Score=30.01 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.1
Q ss_pred cEEEecCCcceecCHHHHHHH
Q 015256 68 GTVLDSGTTYAYLPGHAFAAF 88 (410)
Q Consensus 68 ~aIIDSGTT~t~LP~~vy~aI 88 (410)
.+.+|||++...+|...|+.+
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred EEEEecCCEEEeccHHHHhhh
Confidence 468999999999999999886
No 50
>PF14979 TMEM52: Transmembrane 52
Probab=51.07 E-value=20 Score=32.59 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=26.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhhhhhhc
Q 015256 358 NLVAVVVGIVVTLLLGLSILGLWSVWKRRQE 388 (410)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (410)
|++.+++.+++.|+-|+.+.-+=|-|+|||+
T Consensus 21 yIwLill~~~llLLCG~ta~C~rfCClrk~~ 51 (154)
T PF14979_consen 21 YIWLILLIGFLLLLCGLTASCVRFCCLRKQA 51 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6777888888889999999988899999985
No 51
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=50.20 E-value=16 Score=31.92 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhc
Q 015256 365 GIVVTLLLGLSILGLWSVWKRRQE 388 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~ 388 (410)
+|+|.+++-+++++++.--|||++
T Consensus 6 ~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444344434444444433
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=49.98 E-value=1.4e+02 Score=27.81 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=19.0
Q ss_pred CcEEEecCCcceecCHHHHHHH
Q 015256 67 HGTVLDSGTTYAYLPGHAFAAF 88 (410)
Q Consensus 67 ~~aIIDSGTT~t~LP~~vy~aI 88 (410)
..+++|||+...+.-.++.+.|
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEeCCCccceeehhhHHhh
Confidence 4689999999999888888877
No 53
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=47.84 E-value=36 Score=31.31 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=37.4
Q ss_pred eEEEEEeecccCCCCCcchhHHHHHHHhhcccCcceeEEeeeeecC
Q 015256 250 VITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKG 295 (410)
Q Consensus 250 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (410)
..|++..+-...+.+.|+..++-+.+|+-|+++.+||.+-==|..|
T Consensus 91 i~niD~tii~e~PKi~p~~~~m~~~la~~L~~~~~~V~iKatT~E~ 136 (157)
T PF02542_consen 91 IVNIDITIIAERPKISPYRPAMRENLAKLLGIPPDRVNIKATTTEG 136 (157)
T ss_dssp EEEEEEEEESSSSTTGGGHHHHHHHHHHHHTS-GGGEEEEEE-TTT
T ss_pred EEEEEEEEEcCCCccHHHHHHHHHHHHHHhCCCcceEEEEEecCCC
Confidence 3456777788999999999999999999999999999886555544
No 54
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=47.72 E-value=25 Score=30.99 Aligned_cols=30 Identities=17% Similarity=0.390 Sum_probs=24.2
Q ss_pred EEEECCEEeecCCccccCCCcEEEecCCcceecCHHHHHHH
Q 015256 48 ELRVAGKPLKVSPRIFDGGHGTVLDSGTTYAYLPGHAFAAF 88 (410)
Q Consensus 48 gI~Vgg~~l~l~~~~f~~~~~aIIDSGTT~t~LP~~vy~aI 88 (410)
.+.+||+.++ |+||||+-.+.++.+.++.+
T Consensus 28 ~~~ing~~vk-----------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-----------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-----------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-----------EEEeCCCCccccCHHHHHHc
Confidence 4778888874 89999999999999999885
No 55
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=47.04 E-value=3.1e+02 Score=28.62 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=30.7
Q ss_pred EEEEEcCCCCeEEcHHHhhcEEEEEeCCCCEEEEEecC
Q 015256 161 LGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWKTN 198 (410)
Q Consensus 161 l~i~~s~~~~~ILG~~Fmr~~yVVFD~en~rIGFA~s~ 198 (410)
+.++...+-.-.||-..+|++...-|++++++-++...
T Consensus 310 ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~ 347 (380)
T KOG0012|consen 310 FTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTE 347 (380)
T ss_pred eEEecCCCcchhhhHHHHHhccceeecccCeEEecCCC
Confidence 44444336678999999999999999999999998753
No 56
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=46.82 E-value=10 Score=26.60 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=16.9
Q ss_pred CcchhHHHHHHHhhcccCcceeE
Q 015256 265 KPNFTELSEFIAHELQVDDIEVH 287 (410)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~ 287 (410)
++..+=.|..+|+|++||.+||.
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~ 24 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVK 24 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSS
T ss_pred CcccCHHHHHHHHHcCCCccccc
Confidence 45566789999999999999873
No 57
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=46.61 E-value=23 Score=38.09 Aligned_cols=39 Identities=31% Similarity=0.449 Sum_probs=25.1
Q ss_pred HHHHHHHHHhhhhhhhhcccccccccccc---------cccccccCCC
Q 015256 371 LLGLSILGLWSVWKRRQEASKTYQPVGAV---------VPEQELQPLQ 409 (410)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 409 (410)
++.+++++++++||+|+.+..-=+||... +|=+||.|||
T Consensus 166 ~l~~lvi~~~~~~r~~k~~~~~~e~~~~p~~d~~~~~sspl~~l~pl~ 213 (534)
T KOG3653|consen 166 LLAALVILAFLGYRQRKNAREEIEPVLIPLEDSGPAPSSPLLELDPLQ 213 (534)
T ss_pred HHHHHHHHHHHHHHHhhcccccCccCcccCCCCCCCCCcccccCCchh
Confidence 33345566889999888776544466543 4556677765
No 58
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=46.58 E-value=22 Score=28.47 Aligned_cols=29 Identities=28% Similarity=0.722 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 015256 365 GIVVTLLLGLSILGLWSVWKRRQEASKTY 393 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (410)
|.+++.++-+.+.|+|..||.+++...+-
T Consensus 12 gL~ls~i~V~~~~~~wi~~Ra~~~~DKT~ 40 (72)
T PF13268_consen 12 GLLLSSILVLLVSGIWILWRALRKKDKTA 40 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence 66666666667888999999887766554
No 59
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=44.64 E-value=18 Score=29.18 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=23.5
Q ss_pred eecccCCCCCcch-hHHHHHHHhhcccCcceeEEe
Q 015256 256 SFSLNNSHMKPNF-TELSEFIAHELQVDDIEVHLL 289 (410)
Q Consensus 256 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 289 (410)
.+.+.-++.+=.. .+|.+|+|+.|+|..|+|+|.
T Consensus 29 ~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~ 63 (77)
T PF02594_consen 29 KIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIV 63 (77)
T ss_dssp EEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEEC
T ss_pred EEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEE
Confidence 3444444444333 689999999999999999986
No 60
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=43.89 E-value=20 Score=35.81 Aligned_cols=93 Identities=29% Similarity=0.370 Sum_probs=43.5
Q ss_pred ceeEEeeeeecC--CceeEEEEeecCCCCcchhhhhHHHHHHHHhhcccccCCCcCceeeEeeeecCc----------cc
Q 015256 284 IEVHLLNFSSKG--HDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQ----------IK 351 (410)
Q Consensus 284 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 351 (410)
..|++.|.+... +.+..+++-|=..-.=-|+|.+.-|.-.- -.-|-|-|+-=.-+++ .+
T Consensus 138 I~V~F~~~~~~~~~~~~~~~Cv~F~~~G~~~~~~~~~~nvC~~---------~~~GHfslVV~~~~~~~~~~~~~~~~~~ 208 (278)
T PF06697_consen 138 ILVDFSNVSPAPQPGMSVPKCVTFDLDGSVTFSNMTSPNVCST---------SRQGHFSLVVPSPAPPPAPPPPGAPPRK 208 (278)
T ss_pred EEEEecCCccCCCcccccceEEEEcCCCcEEEeccCCCceeee---------ecCceEEEEEcCCCCCCCCCCcccccCC
Confidence 345555544432 23667777773333222333333322111 1357777776322221 45
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 015256 352 QTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRR 386 (410)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (410)
|+||=.-.+.+++|+++..+|+++.+ ...-||||
T Consensus 209 ~~~~W~iv~g~~~G~~~L~ll~~lv~-~~vr~krk 242 (278)
T PF06697_consen 209 RSWWWKIVVGVVGGVVLLGLLSLLVA-MLVRYKRK 242 (278)
T ss_pred cceeEEEEEEehHHHHHHHHHHHHHH-hhhhhhHH
Confidence 55554445556677666555554433 33344443
No 61
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.85 E-value=18 Score=34.63 Aligned_cols=32 Identities=41% Similarity=0.916 Sum_probs=20.4
Q ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 015256 352 QTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQ 387 (410)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (410)
+.||+++...+++| +++|+..+-.|-.|-.+|
T Consensus 15 k~wwkeNGk~li~g----viLg~~~lfGW~ywq~~q 46 (207)
T COG2976 15 KDWWKENGKALIVG----VILGLGGLFGWRYWQSHQ 46 (207)
T ss_pred HHHHHHCCchhHHH----HHHHHHHHHHHHHHHHHH
Confidence 56999999766655 444544444566665554
No 62
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=43.45 E-value=22 Score=35.46 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccc
Q 015256 362 VVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVVPEQE 404 (410)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (410)
|.+|+.+.+++=|.++|+.+-..+|++....|+|....+-|.|
T Consensus 232 IslAiALG~v~ll~l~Gii~~~~~r~~~~~~~~p~~~~~d~~~ 274 (281)
T PF12768_consen 232 ISLAIALGTVFLLVLIGIILAYIRRRRQGYVPAPTSPRIDEDE 274 (281)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccccCccc
Confidence 3334444444444555666655555566677788887777766
No 63
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=42.12 E-value=64 Score=30.83 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=34.5
Q ss_pred CCCCeEEEEECCCeEEEeCCCccEEEEcccCCceEEEEEEcCCCCeEEcHHHhhcEEEEEeCCCCEEEEEe
Q 015256 126 KTFPQVDMVFGNGQKLTLSPENYLFRHMKVSGAYCLGIFQNSDSTTLLGGIVVRNTLVTYDRGNDKVGFWK 196 (410)
Q Consensus 126 ~~~PtItf~F~gG~t~tI~p~~Yl~~~~~~~~~~Cl~i~~s~~~~~ILG~~Fmr~~yVVFD~en~rIGFA~ 196 (410)
...+.+.+.+ +|..|.++- ++.. ..+-..|||.+|+|.|+=-.+.+ .+|-|-.
T Consensus 65 ~~~~~~~i~I-~~~~F~IP~---iYq~-------------~~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 65 KKAKNGKIQI-ADKIFRIPT---IYQQ-------------ESGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EEecCceEEE-ccEEEeccE---EEEe-------------cCCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 4567777777 566666542 2221 12456899999999888555554 4677765
No 64
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.58 E-value=18 Score=31.93 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.5
Q ss_pred EEEecCCc-ceecCHHHHHHH
Q 015256 69 TVLDSGTT-YAYLPGHAFAAF 88 (410)
Q Consensus 69 aIIDSGTT-~t~LP~~vy~aI 88 (410)
.+||||.+ ++.+|..+++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999999986
No 65
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=39.01 E-value=23 Score=31.54 Aligned_cols=22 Identities=45% Similarity=0.919 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhhhhhhccccccc
Q 015256 371 LLGLSILGLWSVWKRRQEASKTYQ 394 (410)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~ 394 (410)
++.++++++|+.||++++ ..||
T Consensus 30 ll~~~~~~~~~~~r~~~~--~~yr 51 (146)
T PF14316_consen 30 LLLLLILLLWRLWRRWRR--NRYR 51 (146)
T ss_pred HHHHHHHHHHHHHHHHHc--cHHH
Confidence 333444567777777665 3454
No 66
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=38.83 E-value=43 Score=37.17 Aligned_cols=72 Identities=24% Similarity=0.455 Sum_probs=47.2
Q ss_pred EEeecCCCCcchhhhhHHHHHHHHhhcccccCCCcCceeeEeeeecCccccchhhhhhhhhhhHHHHHHHHHHHHHHHhh
Q 015256 302 WGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWS 381 (410)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (410)
|..+ ..-.++||++-.+.. +-..-.|+.-|-.++++=.=-|. .++.++++++++-+.++-...
T Consensus 349 Wlf~--sEv~F~S~~an~~~~----~~~~~~P~s~~~~~v~~~~~~~t-----------~~~~~~f~~if~iva~ii~~~ 411 (807)
T KOG1094|consen 349 WLFF--SEVSFISDAANNSLL----ALGGTFPESRGYQPVLKVDGSPT-----------AILIIIFVAIFLIVALIIALM 411 (807)
T ss_pred eEEE--EEEEEeechhhhcch----hhcCCCCCccccceeEEEcCCCc-----------eehHHHHHHHHHHHHHHHHHH
Confidence 9998 677899988765543 33477888877777765332222 355677777777666666667
Q ss_pred hhhhhhccc
Q 015256 382 VWKRRQEAS 390 (410)
Q Consensus 382 ~~~~~~~~~ 390 (410)
+||||..-+
T Consensus 412 L~R~rr~~~ 420 (807)
T KOG1094|consen 412 LWRWRRLLS 420 (807)
T ss_pred HHHHHHHHh
Confidence 788665544
No 67
>PF11743 DUF3301: Protein of unknown function (DUF3301); InterPro: IPR021732 This family is conserved in Proteobacteria, but the function is not known.
Probab=38.82 E-value=9.5 Score=31.99 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=27.7
Q ss_pred HHHHHhhhhhhhhcccccccccccccccccccCC
Q 015256 375 SILGLWSVWKRRQEASKTYQPVGAVVPEQELQPL 408 (410)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (410)
++++.|+.|..|+.++..++=+.-...+++||=|
T Consensus 8 l~~~~~~~w~~~~~~E~A~~~a~~~C~~~~lQlL 41 (97)
T PF11743_consen 8 LALVGWFWWQSRRQRERALQAARRACKRQDLQLL 41 (97)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCcch
Confidence 4566899999999999998877777777888755
No 68
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=38.29 E-value=12 Score=40.94 Aligned_cols=21 Identities=38% Similarity=1.020 Sum_probs=18.6
Q ss_pred ceeeEeee----ecCccccchhhhh
Q 015256 338 SHQLVKWN----IEPQIKQTWWQRN 358 (410)
Q Consensus 338 ~~~~~~~~----~~~~~~~~~~~~~ 358 (410)
||||+||| =||..+..||-+-
T Consensus 458 syklldwnsfnsdepe~rdawwaei 482 (1169)
T KOG1031|consen 458 SYKLLDWNSFNSDEPETRDAWWAEI 482 (1169)
T ss_pred cceecccccccCCCcchhhHHHHHH
Confidence 89999998 5899999999764
No 69
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=37.93 E-value=12 Score=31.44 Aligned_cols=11 Identities=18% Similarity=0.298 Sum_probs=4.6
Q ss_pred HHHHh-hhhhhh
Q 015256 376 ILGLW-SVWKRR 386 (410)
Q Consensus 376 ~~~~~-~~~~~~ 386 (410)
.+..| |++|||
T Consensus 84 ~~l~w~f~~r~k 95 (96)
T PTZ00382 84 GFLCWWFVCRGK 95 (96)
T ss_pred HHHhheeEEeec
Confidence 33344 444433
No 70
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=36.94 E-value=22 Score=36.21 Aligned_cols=40 Identities=23% Similarity=0.546 Sum_probs=24.0
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhcc-cccccc
Q 015256 356 QRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEA-SKTYQP 395 (410)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 395 (410)
|.+++.+++++++.+++...++.++++||.|.+. ...|.|
T Consensus 40 ~~~Li~~~~~~~liv~i~V~~l~~~f~~ryR~~~~~a~y~p 80 (315)
T PRK10525 40 QRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSP 80 (315)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHheeEEEEecCCCcCCCCC
Confidence 4455545555545455554555688999988653 356766
No 71
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=35.49 E-value=53 Score=27.43 Aligned_cols=21 Identities=38% Similarity=0.816 Sum_probs=13.7
Q ss_pred Hhhh-hhhhhcccc-cccccccc
Q 015256 379 LWSV-WKRRQEASK-TYQPVGAV 399 (410)
Q Consensus 379 ~~~~-~~~~~~~~~-~~~~~~~~ 399 (410)
+||+ |++|.++.. -|+||=..
T Consensus 50 lwfvCC~kRkrsRrPIYrPvI~~ 72 (94)
T PF05393_consen 50 LWFVCCKKRKRSRRPIYRPVIGL 72 (94)
T ss_pred HHHHHHHHhhhccCCcccccccc
Confidence 4554 777766654 59998653
No 72
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=35.38 E-value=11 Score=32.82 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=1.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhh
Q 015256 362 VVVGIVVTLLLGLSILGLWSVWKRR 386 (410)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (410)
+-.||++.+|..|+++|-|+.-||.
T Consensus 27 aGIGiL~VILgiLLliGCWYckRRS 51 (118)
T PF14991_consen 27 AGIGILIVILGILLLIGCWYCKRRS 51 (118)
T ss_dssp -SSS---------------------
T ss_pred ccceeHHHHHHHHHHHhheeeeecc
Confidence 4457777777778899999987653
No 73
>PRK01530 hypothetical protein; Reviewed
Probab=34.57 E-value=30 Score=29.71 Aligned_cols=33 Identities=15% Similarity=0.408 Sum_probs=26.0
Q ss_pred hHHHHHHHhhcccCcceeEEeeeeecCCceeEEEEee
Q 015256 269 TELSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIF 305 (410)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
.+|.+|+|+.|+|..|+|.|+- |..+..+=...
T Consensus 56 ~ali~~LAk~l~v~ks~I~Ivs----G~tSR~K~i~I 88 (105)
T PRK01530 56 EEIINYLAKEWKLSRSNIEIIK----GHTHSLKTILI 88 (105)
T ss_pred HHHHHHHHHHhCCChhhEEEEe----cCCCCceEEEE
Confidence 6899999999999999999974 55555554443
No 74
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=33.05 E-value=42 Score=22.31 Aligned_cols=19 Identities=42% Similarity=0.826 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 015256 365 GIVVTLLLGLSILGLWSVWKRR 386 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~ 386 (410)
+..++++++ .|++|++|+|
T Consensus 11 ~ly~~l~~~---s~~~Li~k~~ 29 (29)
T TIGR03063 11 GLYAVLFLG---SGLFLIRKRK 29 (29)
T ss_pred HHHHHHHHH---HHHHHhhccC
Confidence 333444444 4578887754
No 75
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=32.72 E-value=38 Score=28.70 Aligned_cols=13 Identities=31% Similarity=0.199 Sum_probs=9.6
Q ss_pred HHHHHHhhhhhhh
Q 015256 374 LSILGLWSVWKRR 386 (410)
Q Consensus 374 ~~~~~~~~~~~~~ 386 (410)
|+.+++.-.||+|
T Consensus 34 l~c~c~~~~~r~r 46 (102)
T PF11669_consen 34 LSCCCACRHRRRR 46 (102)
T ss_pred HHHHHHHHHHHHH
Confidence 4677778888875
No 76
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=31.63 E-value=49 Score=31.04 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcc
Q 015256 365 GIVVTLLLGLSILGLWSVWKRRQEA 389 (410)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (410)
++++.+++....+.+|++||.|.+.
T Consensus 18 ~i~~iI~v~V~~~l~~~~~k~r~~~ 42 (201)
T TIGR02866 18 AVATTISLLVAALLAYVVWKFRRKG 42 (201)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccc
Confidence 3333333444455577888877543
No 77
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=31.07 E-value=71 Score=27.41 Aligned_cols=33 Identities=21% Similarity=0.443 Sum_probs=24.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q 015256 360 VAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTY 393 (410)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (410)
+..++|+++.++|+.+.+ .|-+-|||.++....
T Consensus 3 Ll~il~llLll~l~asl~-~wr~~~rq~k~~~~~ 35 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLL-AWRMKQRQKKAGQYS 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhccccCCC
Confidence 455678889899998777 777777776666553
No 78
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=30.90 E-value=56 Score=26.41 Aligned_cols=29 Identities=38% Similarity=0.462 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhccccccccc
Q 015256 368 VTLLLGLSILGLWSVWKRRQEASKTYQPV 396 (410)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (410)
-.+++-++..|+++-|+|+.+...++|+-
T Consensus 24 al~~l~~~isGl~l~~p~~~~~~~~~r~~ 52 (88)
T PF13703_consen 24 ALLLLLLLISGLYLWWPRRWRWFFSLRPK 52 (88)
T ss_pred HHHHHHHHHHHHHHhhHHhcCcccccccC
Confidence 33344445567888887666655566543
No 79
>PRK05090 hypothetical protein; Validated
Probab=29.93 E-value=42 Score=28.26 Aligned_cols=34 Identities=15% Similarity=0.291 Sum_probs=24.9
Q ss_pred eecccCCCCCcch-hHHHHHHHhhcccCcceeEEe
Q 015256 256 SFSLNNSHMKPNF-TELSEFIAHELQVDDIEVHLL 289 (410)
Q Consensus 256 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 289 (410)
.+.+.-++.+=.. .+|.+|+|+.|+|..|+|.|.
T Consensus 35 kv~v~ApPveGkAN~ali~~LAk~l~v~ks~I~i~ 69 (95)
T PRK05090 35 KVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIE 69 (95)
T ss_pred EEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEE
Confidence 3344444444333 689999999999999999986
No 80
>PRK09459 pspG phage shock protein G; Reviewed
Probab=29.40 E-value=70 Score=25.92 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=11.2
Q ss_pred HHHHhhhhhhhhccccccc
Q 015256 376 ILGLWSVWKRRQEASKTYQ 394 (410)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~ 394 (410)
+.++|++..++++....|+
T Consensus 55 ~v~vW~~r~~~~~~~~~y~ 73 (76)
T PRK09459 55 VVVVWVIRAIKAPKVPRYQ 73 (76)
T ss_pred HHHHHHHHHhhcccccccc
Confidence 3456666555655666675
No 81
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=29.21 E-value=54 Score=21.47 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=5.7
Q ss_pred HHhhhhhhhh
Q 015256 378 GLWSVWKRRQ 387 (410)
Q Consensus 378 ~~~~~~~~~~ 387 (410)
+.++.+|||+
T Consensus 24 ~~~~~~~rk~ 33 (34)
T TIGR01167 24 GGLLLRKRKK 33 (34)
T ss_pred HHHHheeccc
Confidence 4556666553
No 82
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.68 E-value=57 Score=24.75 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=9.5
Q ss_pred hhhhhHHHHHHHHHHHH
Q 015256 360 VAVVVGIVVTLLLGLSI 376 (410)
Q Consensus 360 ~~~~~~~~~~~~~~~~~ 376 (410)
+.+.+-+++++++|..+
T Consensus 18 ~pl~l~il~~f~~G~ll 34 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALL 34 (68)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 45555556666666433
No 83
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=28.05 E-value=56 Score=31.32 Aligned_cols=30 Identities=27% Similarity=0.727 Sum_probs=21.3
Q ss_pred eeecCccccchhhhhhhhhhhHHHHHHHHH
Q 015256 344 WNIEPQIKQTWWQRNLVAVVVGIVVTLLLG 373 (410)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (410)
|.++|..+|.+|++....+++.+++.+++.
T Consensus 99 ~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~ 128 (260)
T PF03631_consen 99 YGVPPRERRSFWKRRLIALLFLIILGVLLI 128 (260)
T ss_pred hcccccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 677778889999999887766554444443
No 84
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=27.76 E-value=1.1e+02 Score=21.93 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=17.9
Q ss_pred cEEEecCCcceecCHHHHHHH
Q 015256 68 GTVLDSGTTYAYLPGHAFAAF 88 (410)
Q Consensus 68 ~aIIDSGTT~t~LP~~vy~aI 88 (410)
.+++|+|++...+..+.++..
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 579999999999999887653
No 85
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=27.71 E-value=95 Score=24.70 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=36.4
Q ss_pred HHHHHHHhhcccccCCCcCceeeEeeeecCccccchhhhhhhhhhhHHHHHHHHHH
Q 015256 319 LNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGL 374 (410)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (410)
..++.|+.|-++......++.+++|.-..|. +...-. ..+.+++|.++.+++|+
T Consensus 21 ~~Ll~r~~e~~~~~~~~~~~~~ivd~A~~P~-~P~~P~-~~lil~l~~~~Gl~lgi 74 (82)
T PF13807_consen 21 ETLLQRYEEARLSKASNVSNVRIVDPAIVPD-KPVSPK-RALILALGLFLGLILGI 74 (82)
T ss_pred HHHHHHHHHHHHHHhccCCCceeccccccCC-CCCCCc-HHHHHHHHHHHHHHHHH
Confidence 3456788888888889999999999987553 333332 33445556666666653
No 86
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=27.28 E-value=2.6e+02 Score=22.80 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=43.1
Q ss_pred ecccCCC-CCcchhHHHHHHHhhcccCcceeEEeeeeecC--CceeEEEEeecCCCCcchhhhhHHHHHHH
Q 015256 257 FSLNNSH-MKPNFTELSEFIAHELQVDDIEVHLLNFSSKG--HDYLVRWGIFPDESDNYISNTTALNIILR 324 (410)
Q Consensus 257 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (410)
+.+..+- -+|.-.|+-+-+|..|++|.++|-+-+|-..- +.+...=-|+ .+.++.--.=...++.|
T Consensus 3 ~~v~h~g~~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~IY--d~~e~~kk~Ep~~~l~R 71 (84)
T PF01282_consen 3 FEVLHPGKPTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKIY--DSAEALKKFEPKYRLKR 71 (84)
T ss_dssp EEEE-SSSSS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEEE--SSHHHHHHHSTHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEEe--CCHHHHHHhCcHHHhHh
Confidence 3444444 67999999999999999999999999997764 3344455566 55555444444444433
No 87
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=27.00 E-value=1.9e+02 Score=27.69 Aligned_cols=104 Identities=12% Similarity=0.116 Sum_probs=51.2
Q ss_pred HHHHHHhhcccCcceeEEeeeeecCCceeEEEEeecCCCCcchhhhhHHHHHHHHhhcccccCCCcCceeeEeeeecCcc
Q 015256 271 LSEFIAHELQVDDIEVHLLNFSSKGHDYLVRWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQI 350 (410)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (410)
|-+...++.+ ..+-||.=..+.-+.-.+=+.+. ...+-.+. ...|.+|+-.|. .+| +-|.+.+-..
T Consensus 25 lC~~~~~~~~--~~~C~l~Laq~~~~~q~Lll~l~--~~t~~~~~------l~~Lk~~~~~L~-e~G---Iq~~s~~~~~ 90 (202)
T PF06365_consen 25 LCRAFKANFN--QDDCSLSLAQSEENQQCLLLVLT--NETGLSPK------LQLLKDHRSDLE-ELG---IQNFSEGDSC 90 (202)
T ss_pred HHHHhcccCC--CCCcEEEEecCCCCcceEEEEee--cccCcccH------HHHHHHHHHHHH-HcC---Cccccccccc
Confidence 3333334434 44555555555555555555555 22332222 667777777774 344 2233333333
Q ss_pred ccchhhhh--hhhhhhHHHHHHHHHHHHHHHhhhhhhhhc
Q 015256 351 KQTWWQRN--LVAVVVGIVVTLLLGLSILGLWSVWKRRQE 388 (410)
Q Consensus 351 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (410)
...+-+.. .+++++.+--.+++.++.+++++.|.||..
T Consensus 91 ~~~~~~~r~~~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 91 SHQSSSDRYPTLIALVTSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred CCCCcCccceEEEehHHhhHHHHHHHHHHHHHHhhhhccC
Confidence 33345555 222222211125555666777899988854
No 88
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=26.62 E-value=21 Score=31.56 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhcccccccccc
Q 015256 370 LLLGLSILGLWSVWKRRQEASKTYQPVG 397 (410)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (410)
++++|++ |+...||.|++..-+| ||.
T Consensus 90 lVl~lls-g~lv~rrcrrr~~~tt-PIe 115 (129)
T PF12191_consen 90 LVLALLS-GFLVWRRCRRREKFTT-PIE 115 (129)
T ss_dssp ----------------------------
T ss_pred HHHHHHH-HHHHHhhhhccccCCC-ccc
Confidence 3344443 4444444555555555 775
No 89
>PRK00084 ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed
Probab=25.88 E-value=1.3e+02 Score=27.79 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=37.7
Q ss_pred EEEEEeecccCCCCCcchhHHHHHHHhhcccCcceeEEeeeeecC
Q 015256 251 ITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKG 295 (410)
Q Consensus 251 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (410)
.|++..+-...|.+.|+..++-+.+|+-|+++.++|.+===|..|
T Consensus 94 ~niD~tii~e~PKi~p~~~~m~~~la~~L~i~~~~V~iKatT~E~ 138 (159)
T PRK00084 94 GNVDITIIAQRPKMAPHIEEMRANIAEDLGIPLDDVNVKATTTEK 138 (159)
T ss_pred EEEEEEEEcCCCcchHHHHHHHHHHHHHhCCCcceEEEEEecCCC
Confidence 456777778999999999999999999999999999875555443
No 90
>cd00554 MECDP_synthase MECDP_synthase (2-C-methyl-D-erythritol-2,4-cyclodiphosphate synthase), encoded by the ispF gene, catalyzes the formation of 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (MEC) in the non-mevalonate deoxyxylulose (DOXP) pathway for isoprenoid biosynthesis. This pathway is present in bacteria, plants and some protozoa but is distinct from that used by mammals and Archaea. MECDP_synthase forms a homotrimer, carrying three active sites, each of which is formed in a cleft between pairs of subunits.
Probab=25.59 E-value=1.4e+02 Score=27.39 Aligned_cols=45 Identities=13% Similarity=0.285 Sum_probs=37.1
Q ss_pred EEEEEeecccCCCCCcchhHHHHHHHhhcccCcceeEEeeeeecC
Q 015256 251 ITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKG 295 (410)
Q Consensus 251 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (410)
.|++..+=..+|.+.|+..+.-+.+|+-|+++..+|.+-==|..|
T Consensus 91 ~niD~tii~e~PKi~p~~~~m~~~ls~~L~~~~~~V~iKatT~E~ 135 (153)
T cd00554 91 VNIDITIIAERPKISPYREAMRANLAELLGIPPSRVNIKATTTEG 135 (153)
T ss_pred EEEEEEEEecCCcchHHHHHHHHHHHHHhCCCCceEEEEEecCCC
Confidence 445667777889999999999999999999999999875444443
No 91
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=25.54 E-value=70 Score=30.21 Aligned_cols=10 Identities=20% Similarity=0.790 Sum_probs=8.3
Q ss_pred eEeeeecCcc
Q 015256 341 LVKWNIEPQI 350 (410)
Q Consensus 341 ~~~~~~~~~~ 350 (410)
.+.|+++|-.
T Consensus 162 ~l~W~L~pGe 171 (209)
T PF11353_consen 162 QLTWKLQPGE 171 (209)
T ss_pred EEEEecCCCc
Confidence 7899998865
No 92
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=25.50 E-value=67 Score=31.92 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=35.0
Q ss_pred EEEeecCCCCcchhhhhHHHHHHHHhhcccccCCCcCceeeEeeeecCccccchhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 015256 301 RWGIFPDESDNYISNTTALNIILRLREHHMQFPERFGSHQLVKWNIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLW 380 (410)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (410)
.|-++| ...+-.++.-.++...+....=.=.. -|-=+=|+.++.+.- + ...++ ++.++..++++ .|
T Consensus 184 ~~~~~~--~~~W~p~a~~~~l~l~~~~~~~sC~~---r~gNlCw~~~~~s~l--~-~~~~i-----~L~~~~i~l~~-gw 249 (262)
T PF11884_consen 184 GWKVYP--ESVWQPLAEQAGLTLSLRSAGNSCFV---RYGNLCWSEEDHSHL--L-RISMI-----ALVLANILLVL-GW 249 (262)
T ss_pred eEEEec--HHHHHHHHHhcCceEecccCCCcccc---eecceeeccCCchhH--H-HHHHH-----HHHHHHHHHHH-HH
Confidence 688884 44565555555444332221111112 233467888655321 2 11111 12222222333 38
Q ss_pred hhhhhhhcc
Q 015256 381 SVWKRRQEA 389 (410)
Q Consensus 381 ~~~~~~~~~ 389 (410)
.+||||++.
T Consensus 250 ~~y~~~~kr 258 (262)
T PF11884_consen 250 SLYRWNQKR 258 (262)
T ss_pred HHHHHHHHH
Confidence 888888765
No 93
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.18 E-value=62 Score=32.72 Aligned_cols=17 Identities=6% Similarity=0.128 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHhhh
Q 015256 81 PGHAFAAFKDALIKETH 97 (410)
Q Consensus 81 P~~vy~aIi~aI~~~~~ 97 (410)
.++..+.+++.|+++..
T Consensus 33 NDPeMK~Vme~F~rqTs 49 (299)
T PF02009_consen 33 NDPEMKSVMENFDRQTS 49 (299)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 46778888888886653
No 94
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=25.03 E-value=50 Score=31.87 Aligned_cols=29 Identities=17% Similarity=0.550 Sum_probs=15.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhhhhc
Q 015256 360 VAVVVGIVVTLLLGLSILGLWSVWKRRQE 388 (410)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (410)
+.+++++...+++...++.+|++||.|.+
T Consensus 32 ~~~~~~~~~ii~v~v~~~~~~~~~r~r~~ 60 (226)
T TIGR01433 32 ILTAFGLMLLVVIPVILMTLFFAWKYRAT 60 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeEEEecc
Confidence 33333433334444445557889987754
No 95
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=24.67 E-value=59 Score=26.22 Aligned_cols=24 Identities=17% Similarity=0.646 Sum_probs=15.9
Q ss_pred cccchhhhhhhhhhhHHHHHHHHH
Q 015256 350 IKQTWWQRNLVAVVVGIVVTLLLG 373 (410)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~ 373 (410)
.++.||++.-+.+.+++++.+++.
T Consensus 58 ~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 58 KRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHhhhhhhhh
Confidence 467799998777666655544443
No 96
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=23.84 E-value=84 Score=21.00 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=17.5
Q ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHhhhh
Q 015256 351 KQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVW 383 (410)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (410)
+|.|++=|.+.-+...+..+++++ -|+++.+
T Consensus 2 r~~~~~~H~~~g~~~~~~ll~~~l--TG~~l~~ 32 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAAIFLLLLAL--TGALLNF 32 (34)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhc
Confidence 466777777665555444444444 4555554
No 97
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=23.82 E-value=76 Score=23.84 Aligned_cols=36 Identities=17% Similarity=0.444 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhhhccccccccccccc
Q 015256 362 VVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQPVGAVV 400 (410)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (410)
+.++++|-++.|+.++.+ || +|..-+..|-|-|.+.
T Consensus 9 ~~~~~~I~~lIgfity~m-fV--~K~s~q~~YTP~d~iT 44 (53)
T PF13131_consen 9 ILFTIFIFFLIGFITYKM-FV--KKASPQIYYTPFDSIT 44 (53)
T ss_pred HHHHHHHHHHHHHHHHHh-he--ecCCCceeeccchhee
Confidence 345666677777777633 34 3445566899998653
No 98
>PF08098 ATX_III: Anemonia sulcata toxin III family; InterPro: IPR012509 This entry occurs within the Anemonia sulcata toxin III (ATX III) neurotoxin family. ATX III is a neurotoxin that is produced by sea anemone; it adopts a compact structure containing four reverse turns and two other chain reversals, but no regular alpha-helix or beta-sheet. A hydrophobic patch found on the surface of the peptide may constitute part of the sodium channel binding surface [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0042151 nematocyst; PDB: 1ANS_A.
Probab=23.20 E-value=39 Score=21.73 Aligned_cols=8 Identities=50% Similarity=1.747 Sum_probs=5.6
Q ss_pred ccccccCC
Q 015256 3 WRDGCRWG 10 (410)
Q Consensus 3 ~~~~~~~~ 10 (410)
|+.+|+||
T Consensus 11 ~~~gC~WG 18 (27)
T PF08098_consen 11 YTGGCPWG 18 (27)
T ss_dssp TTTT-SSS
T ss_pred eecCCccc
Confidence 67788887
No 99
>PHA02898 virion envelope protein; Provisional
Probab=23.18 E-value=1.2e+02 Score=25.42 Aligned_cols=82 Identities=18% Similarity=0.230 Sum_probs=46.5
Q ss_pred CcchhhhhHHHHHHHHhhcccccCCCcCceeeEee-eecCccccchhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhc
Q 015256 310 DNYISNTTALNIILRLREHHMQFPERFGSHQLVKW-NIEPQIKQTWWQRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQE 388 (410)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (410)
.+|+|-.-+-.|++.... |.|-= +|. |-+.+...+|.---....++| +.+++|+. ++-.|+|+=.
T Consensus 8 ~N~~s~vli~GIiLL~~A------CIfAf---idfSK~~~~~~~~wRalSii~FIlg--ivl~lG~~---ifs~y~r~C~ 73 (92)
T PHA02898 8 KNRPSYVVAFGIILLIVA------CICAY---IELSKSEKPADSALRSISIISFILA--IILILGII---FFKGYNMFCG 73 (92)
T ss_pred hcCcchHHHHHHHHHHHH------HHHhe---ehhhcCCCcchhHHHHHHHHHHHHH--HHHHHHHH---HHHHHhhhcC
Confidence 466777777777665543 33322 222 233455777877666666666 33445544 4567887766
Q ss_pred ccccccccc--ccccccccc
Q 015256 389 ASKTYQPVG--AVVPEQELQ 406 (410)
Q Consensus 389 ~~~~~~~~~--~~~~~~~~~ 406 (410)
...+| -++ +--++-|||
T Consensus 74 ~~~~~-e~~ry~ns~~iel~ 92 (92)
T PHA02898 74 GNTTD-EVSRYANSNDIEIQ 92 (92)
T ss_pred CCccc-ccceecCCcccccC
Confidence 66666 222 244666766
No 100
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=22.79 E-value=1.1e+02 Score=28.26 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=18.7
Q ss_pred hhhcccccccccccccccccccCCC
Q 015256 385 RRQEASKTYQPVGAVVPEQELQPLQ 409 (410)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (410)
||++....|--.+-..--+|+.||.
T Consensus 121 ~~~rktRkYgvl~~~~~~~Em~pL~ 145 (163)
T PF06679_consen 121 RRNRKTRKYGVLTTRAENVEMAPLE 145 (163)
T ss_pred cccccceeecccCCCcccceecccC
Confidence 3466778897777666788999985
No 101
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=22.70 E-value=96 Score=19.67 Aligned_cols=8 Identities=63% Similarity=0.484 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 015256 370 LLLGLSIL 377 (410)
Q Consensus 370 ~~~~~~~~ 377 (410)
+.+|+..+
T Consensus 11 ~~~gl~~l 18 (25)
T PF07589_consen 11 LGLGLLGL 18 (25)
T ss_pred HHHHHHHH
Confidence 33444333
No 102
>PLN02862 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Probab=22.43 E-value=1.6e+02 Score=28.55 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=37.8
Q ss_pred EEEEEeecccCCCCCcchhHHHHHHHhhcccCcceeEEeeeeecC
Q 015256 251 ITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSKG 295 (410)
Q Consensus 251 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (410)
.|++..+=...+.+.|+..+.-+.+|+-|+++.++|.+=-=|..|
T Consensus 151 ~NvD~tII~q~PKi~p~~~~m~~~La~lL~i~~~~VnIKAtT~E~ 195 (216)
T PLN02862 151 GNLDATLILQRPKLSPHKEAIRSNLSKLLGADPSVVNLKAKTHEK 195 (216)
T ss_pred EEEEEEEEcCCCcchHHHHHHHHHHHHHhCCCcceEEEEEecCCC
Confidence 456677778899999999999999999999999999876555444
No 103
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=21.80 E-value=1.6e+02 Score=22.78 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=20.4
Q ss_pred HHHHHhhhhhhhhcccccccccccccccccccC
Q 015256 375 SILGLWSVWKRRQEASKTYQPVGAVVPEQELQP 407 (410)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (410)
+++|.|.--..++++...=.||. ..-|++|+|
T Consensus 28 ~~I~a~~hHq~k~~a~~~~~~~~-~~~e~~~~~ 59 (59)
T PF11119_consen 28 SAIGAWVHHQDKKQAQQIEQSVT-FPHETDLSR 59 (59)
T ss_pred HHHhHHHHHHHHHhccccccccc-CccccccCC
Confidence 56677766666666666666776 333777765
No 104
>TIGR00151 ispF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase. Members of this protein family are 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, the IspF protein of the deoxyxylulose (non-mevalonate) pathway of IPP biosynthesis. This protein occurs as an IspDF bifunctional fusion protein in about 20 percent of bacterial genomes.
Probab=21.72 E-value=1.7e+02 Score=26.79 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=38.0
Q ss_pred ceeeeeEEEEEeecccCCCCCcchhHHHHHHHhhcccCcceeEEeeeeec
Q 015256 245 AFQIGVITFDMSFSLNNSHMKPNFTELSEFIAHELQVDDIEVHLLNFSSK 294 (410)
Q Consensus 245 ~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (410)
.++++ |++..+-...+.+.|+..++-+.+|+-|+++.++|.+-==|..
T Consensus 87 g~~i~--niD~tii~e~PKi~p~~~~m~~~la~~L~~~~~~V~iKatT~E 134 (155)
T TIGR00151 87 GYRIG--NVDITIIAQRPKLLPHIPAMRENIAELLGIPLDSVNVKATTTE 134 (155)
T ss_pred CCEEE--EEEEEEEcCCCcchHHHHHHHHHHHHHhCCCcceEEEEEecCC
Confidence 34444 4566666889999999999999999999999999987544443
No 105
>PF02300 Fumarate_red_C: Fumarate reductase subunit C; InterPro: IPR003510 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 15kDa hydrophobic subunit C.; GO: 0016020 membrane; PDB: 1KFY_O 1L0V_O 3P4S_O 2B76_O 3CIR_O 3P4R_C 1KF6_O 3P4P_C 3P4Q_C.
Probab=21.49 E-value=1.1e+02 Score=27.28 Aligned_cols=13 Identities=31% Similarity=0.923 Sum_probs=7.7
Q ss_pred Cccccchhhhhhh
Q 015256 348 PQIKQTWWQRNLV 360 (410)
Q Consensus 348 ~~~~~~~~~~~~~ 360 (410)
++-+++||++|-.
T Consensus 9 R~m~~~WW~k~~F 21 (129)
T PF02300_consen 9 RPMKRTWWKKLPF 21 (129)
T ss_dssp ----TTGGGSSHH
T ss_pred CCCCcchhhcCcH
Confidence 5678899999864
No 106
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=20.63 E-value=76 Score=25.75 Aligned_cols=17 Identities=24% Similarity=0.608 Sum_probs=14.8
Q ss_pred cEEEecCCcceecCHHH
Q 015256 68 GTVLDSGTTYAYLPGHA 84 (410)
Q Consensus 68 ~aIIDSGTT~t~LP~~v 84 (410)
.++||||++.+.++..-
T Consensus 13 ~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 13 NVLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEEEeCCCCCEEEeCCC
Confidence 68999999999998754
No 107
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=20.36 E-value=26 Score=36.48 Aligned_cols=21 Identities=48% Similarity=0.741 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhh
Q 015256 364 VGIVVTLLLGLSILGLWSVWKRRQ 387 (410)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~ 387 (410)
+|-++.++|| +..|++||||+
T Consensus 353 ~~N~v~lllg---~~~~~~~rk~k 373 (374)
T TIGR03503 353 VGNVVILLLG---GIGFFVWRKKK 373 (374)
T ss_pred hhhhhhhhhh---eeeEEEEEEee
Confidence 3444444444 45789999885
No 108
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=20.26 E-value=3e+02 Score=30.89 Aligned_cols=106 Identities=25% Similarity=0.377 Sum_probs=55.9
Q ss_pred ceeEEeeeeec-CCceeEEEEeecC-CCCcchhhhhHHHHHHHHhhcccccCCCcCce------eeEeeeecCccccchh
Q 015256 284 IEVHLLNFSSK-GHDYLVRWGIFPD-ESDNYISNTTALNIILRLREHHMQFPERFGSH------QLVKWNIEPQIKQTWW 355 (410)
Q Consensus 284 ~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 355 (410)
.-|++.|.+-. |.+.-+.-.-|=. ....=+.-+||-.++.+|...++-| .+|-. |-++=..+|+.+.
T Consensus 190 ~tVQmV~~sRl~G~~nP~EL~YyV~~~~G~pl~a~~AA~~Ln~ld~Q~~Al--~LGy~V~~~~AqPv~~~a~P~~~s--- 264 (684)
T PF12877_consen 190 YTVQMVNMSRLEGPDNPVELTYYVEGQNGKPLPAVTAAKDLNLLDSQRMAL--ILGYRVQGIVAQPVEKQAEPPAKS--- 264 (684)
T ss_pred eEEEEEEeeeccCCCCceEEEEEEEcCCCcCCcHHHHHHHHhccCHHHHHH--hcCceeccccccccccccCCCCCC---
Confidence 34455555543 3333344444433 4556678899999999887665544 22211 1122233444332
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhcccccccc
Q 015256 356 QRNLVAVVVGIVVTLLLGLSILGLWSVWKRRQEASKTYQP 395 (410)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (410)
+...+-+++||++.++|-++++ +++.|+--++...-|||
T Consensus 265 ~~~NlWII~gVlvPv~vV~~Ii-iil~~~LCRk~K~eFqp 303 (684)
T PF12877_consen 265 PPNNLWIIAGVLVPVLVVLLII-IILYWKLCRKNKLEFQP 303 (684)
T ss_pred CCCCeEEEehHhHHHHHHHHHH-HHHHHHHhcccccCCCc
Confidence 2222224456666666654444 66677655555666665
No 109
>PRK01310 hypothetical protein; Validated
Probab=20.00 E-value=84 Score=26.86 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=26.0
Q ss_pred eecccCCCCCcch-hHHHHHHHhhcccCcceeEEee
Q 015256 256 SFSLNNSHMKPNF-TELSEFIAHELQVDDIEVHLLN 290 (410)
Q Consensus 256 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 290 (410)
-+.+.-++.+=.. .+|.+|+|+.|+|.-++|.|+-
T Consensus 41 kv~v~apPv~GkAN~ali~~LA~~l~v~ks~I~iv~ 76 (104)
T PRK01310 41 KVRVRAVPEGGEANRALIELLAKALGVPKSSVRLLS 76 (104)
T ss_pred EEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEe
Confidence 3444444444333 6899999999999999999974
Done!