Query 015258
Match_columns 410
No_of_seqs 180 out of 243
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:27:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 98.9 2.3E-09 8E-14 81.2 5.6 42 126-170 2-43 (55)
2 2dgc_A Protein (GCN4); basic d 98.4 2.8E-07 9.4E-12 71.6 5.2 39 123-164 7-45 (63)
3 1jnm_A Proto-oncogene C-JUN; B 98.2 2E-06 6.7E-11 66.1 5.6 37 125-164 1-37 (62)
4 2wt7_A Proto-oncogene protein 98.0 9.8E-06 3.3E-10 62.5 6.5 37 125-164 2-38 (63)
5 1t2k_D Cyclic-AMP-dependent tr 98.0 1.2E-05 4E-10 61.5 5.8 30 126-155 2-31 (61)
6 1gd2_E Transcription factor PA 97.9 9.3E-06 3.2E-10 64.4 4.8 39 126-167 9-47 (70)
7 2y39_A Nickel and cobalt resis 97.2 0.0064 2.2E-07 52.6 13.4 101 275-393 9-112 (118)
8 1ci6_A Transcription factor AT 96.5 0.0023 7.8E-08 49.3 4.4 33 126-158 3-35 (63)
9 3a5t_A Transcription factor MA 95.2 0.0072 2.5E-07 51.5 2.1 38 125-165 37-74 (107)
10 1gu4_A CAAT/enhancer binding p 94.5 0.098 3.3E-06 42.1 6.9 48 123-170 13-71 (78)
11 3itf_A Periplasmic adaptor pro 94.0 0.31 1.1E-05 43.2 9.6 99 283-401 42-142 (145)
12 1hjb_A Ccaat/enhancer binding 93.5 0.2 6.8E-06 41.1 6.9 48 123-170 13-71 (87)
13 3oeo_A Spheroplast protein Y; 85.9 0.39 1.3E-05 41.9 2.7 100 281-398 28-127 (138)
14 3lay_A Zinc resistance-associa 82.5 15 0.00051 33.3 11.7 54 270-326 52-106 (175)
15 3o39_A Periplasmic protein rel 81.9 1.9 6.5E-05 36.4 5.1 83 287-387 17-100 (108)
16 2wt7_B Transcription factor MA 81.2 3.5 0.00012 34.0 6.4 33 123-155 25-57 (90)
17 1skn_P DNA-binding domain of S 76.2 1.2 4.2E-05 36.9 2.1 29 124-152 61-89 (92)
18 2ksd_A Aerobic respiration con 66.4 0.47 1.6E-05 40.8 -2.5 30 147-176 76-105 (115)
19 2ke4_A CDC42-interacting prote 55.8 79 0.0027 26.0 9.2 42 285-327 8-54 (98)
20 2er8_A Regulatory protein Leu3 53.1 6.9 0.00023 29.3 2.2 23 144-169 47-69 (72)
21 1zme_C Proline utilization tra 51.3 10 0.00035 27.9 2.9 24 144-170 42-65 (70)
22 1hwt_C Protein (heme activator 45.1 9.2 0.00032 29.0 1.8 27 139-168 51-77 (81)
23 3he4_B Synzip5; heterodimeric 44.5 25 0.00084 25.1 3.7 26 144-169 8-33 (46)
24 2c9l_Y EB1, zebra, BZLF1 trans 42.9 27 0.00091 26.6 3.9 23 130-155 6-28 (63)
25 2kz5_A Transcription factor NF 42.7 5 0.00017 33.2 -0.1 21 125-145 66-86 (91)
26 1ux5_A BNI1 protein; structura 40.7 2.8E+02 0.0095 27.4 12.5 90 308-398 301-392 (411)
27 4abm_A Charged multivesicular 39.1 43 0.0015 26.6 4.9 36 131-166 41-76 (79)
28 4i0x_B ESAT-6-like protein MAB 35.0 1.2E+02 0.0041 23.9 7.1 48 146-207 25-72 (103)
29 1k1f_A Breakpoint cluster regi 34.3 29 0.00099 27.3 3.0 32 145-176 28-60 (72)
30 3plt_A Sphingolipid long chain 30.2 65 0.0022 30.6 5.3 42 131-172 99-147 (234)
31 3coq_A Regulatory protein GAL4 30.1 33 0.0011 26.2 2.8 23 144-169 43-65 (89)
32 1pyi_A Protein (pyrimidine pat 29.9 38 0.0013 26.4 3.2 22 145-169 47-68 (96)
33 1hlo_A Protein (transcription 25.7 40 0.0014 26.2 2.6 24 146-172 57-80 (80)
34 1s16_A Topoisomerase IV subuni 25.7 18 0.00062 36.2 0.7 15 131-145 376-390 (390)
35 3obv_E Protein diaphanous homo 23.7 5.8E+02 0.02 25.8 12.5 176 190-396 170-375 (457)
36 2j1d_G DAAM1, disheveled-assoc 21.9 6.3E+02 0.022 25.5 13.0 188 190-397 181-388 (483)
37 1js9_A Coat protein, capsid pr 21.6 19 0.00067 32.7 0.0 15 131-145 12-26 (189)
38 1d66_A Protein (GAL4); protein 20.7 30 0.001 24.9 0.9 16 144-162 50-65 (66)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=98.87 E-value=2.3e-09 Score=81.20 Aligned_cols=42 Identities=43% Similarity=0.576 Sum_probs=37.6
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHHHHHhh
Q 015258 126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQ 170 (410)
Q Consensus 126 ~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel~~ar~ 170 (410)
-.+|+..|||+|+.||.|||+||+.||. ++.+|+.|-..-+.
T Consensus 2 r~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 2 REVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4799999999999999999999999999 78888888776554
No 2
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=98.41 E-value=2.8e-07 Score=71.57 Aligned_cols=39 Identities=38% Similarity=0.466 Sum_probs=29.3
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHH
Q 015258 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE 164 (410)
Q Consensus 123 ~~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqe 164 (410)
+|+..+|-++||||||+||.||++|+..||. ++.+|+.|
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~---~v~~L~~e 45 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLED---KVEELLSK 45 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 5666777788999999999999999999999 55444443
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=98.19 E-value=2e-06 Score=66.11 Aligned_cols=37 Identities=41% Similarity=0.482 Sum_probs=30.9
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHH
Q 015258 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE 164 (410)
Q Consensus 125 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqe 164 (410)
|..||...||+||+|||.|||.|++.||. ++..|+.+
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~---~v~~L~~~ 37 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEE---KVKTLKAQ 37 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45789999999999999999999999999 44444443
No 4
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=98.02 E-value=9.8e-06 Score=62.51 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=31.0
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHH
Q 015258 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQE 164 (410)
Q Consensus 125 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqe 164 (410)
|-.+|+-.||+||+|||.|||.|++.||. +..+|+.+
T Consensus 2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~---~v~~L~~~ 38 (63)
T 2wt7_A 2 KRRIRRERNKMAAAKCRNRRRELTDTLQA---ETDQLEDE 38 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 45789999999999999999999999999 44444443
No 5
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=97.95 E-value=1.2e-05 Score=61.51 Aligned_cols=30 Identities=40% Similarity=0.556 Sum_probs=27.3
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHhhhh
Q 015258 126 TLRRLAQNREAARKSRLRKKAYVQQLESSR 155 (410)
Q Consensus 126 ~~rrLaqNREaARkSRlRKKaYvqqLE~sr 155 (410)
=.+|+..||+||.|||.|||.|++.||.--
T Consensus 2 R~~r~erNr~AA~k~R~rKk~~~~~Le~~~ 31 (61)
T 1t2k_D 2 RRKFLERNRAAASRSRQKRKVWVQSLEKKA 31 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999943
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=97.92 E-value=9.3e-06 Score=64.43 Aligned_cols=39 Identities=33% Similarity=0.419 Sum_probs=34.0
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHHHH
Q 015258 126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 167 (410)
Q Consensus 126 ~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel~~ 167 (410)
..+|-||||+|+|-.|-||++||..||. ++.+||.+.+.
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~~ 47 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSS 47 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4688999999999999999999999999 88888765543
No 7
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=97.23 E-value=0.0064 Score=52.62 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=77.4
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHH
Q 015258 275 SELLKLLVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLG 354 (410)
Q Consensus 275 SellkLL~~qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~ 354 (410)
+.+=.+|...| +||++|...|..+...-.....+|.++|...-.-|++.+.... .|..++..|+.
T Consensus 9 ~~lH~~vh~~L-~Lt~~Q~~~leaie~~fa~~r~~le~emRaan~~La~ai~~~~-----------~~~p~V~aaid--- 73 (118)
T 2y39_A 9 GDLHEILHEAV-PLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNP-----------AWSPEVEAATQ--- 73 (118)
T ss_dssp CCHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------SCCHHHHHHHH---
T ss_pred CchHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------ccCHHHHHHHH---
Confidence 33444566777 7999999999999999999999999999999999999986321 13445555554
Q ss_pred HHHHHHHHHhHHHHHH---HHHHHHhcChHHHHHHHHHHHHH
Q 015258 355 TLEGFLRQADNLRQQT---LQQMHRILTTRQSARALLAINDY 393 (410)
Q Consensus 355 ~Le~fv~qAD~LR~qT---L~qm~~ILTprQAArfLlAl~ey 393 (410)
.|-...-.|+..| +-.|..||||-|+.+|=-.+.+-
T Consensus 74 ---~~h~~mG~LQkeTi~HvfeMR~VLtPeQ~~~fd~~vv~a 112 (118)
T 2y39_A 74 ---EVERAAGDLQRATLVHVFEMRAGLKPEHRPAYDRVLIDA 112 (118)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3333555688888 66689999999999997666544
No 8
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=96.54 E-value=0.0023 Score=49.33 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=24.4
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHH
Q 015258 126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKL 158 (410)
Q Consensus 126 ~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL 158 (410)
-.|+.-+||.||+++|.|||.+++.||.---.|
T Consensus 3 ~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L 35 (63)
T 1ci6_A 3 KLKKMEQNKTAATRYRQKKRAEQEALTGECKEL 35 (63)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999999999999999999999843333
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=95.20 E-value=0.0072 Score=51.47 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=31.5
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHH
Q 015258 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 165 (410)
Q Consensus 125 k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel 165 (410)
|-.||--.||++|+.||.||.+.+..||. .+.+|.+|+
T Consensus 37 K~~RR~lKNR~yAq~CR~rk~~~~~~LE~---e~~~L~~e~ 74 (107)
T 3a5t_A 37 KQRRRTLKNRGYAASCRVKRVTQKEELEK---QKAELQQEV 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTTSSTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 77899999999999999999999999997 444444443
No 10
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=94.51 E-value=0.098 Score=42.10 Aligned_cols=48 Identities=31% Similarity=0.306 Sum_probs=37.3
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHhh---------hh--hHHhhHHHHHHHHhh
Q 015258 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLES---------SR--LKLTQLEQELQRARQ 170 (410)
Q Consensus 123 ~~k~~rrLaqNREaARkSRlRKKaYvqqLE~---------sr--~kL~qleqel~~ar~ 170 (410)
|++-..|-..|.+||||||-.+|.-.+.++. .+ .++.+|+.|+..-|.
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888899999999999999998888844 33 345666667666665
No 11
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=93.96 E-value=0.31 Score=43.18 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=61.3
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHH-HHHHHHHHHH
Q 015258 283 NQLEPLTEQQLVGIYNLQQSSQQAEDALSQ-GMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAM-GKLGTLEGFL 360 (410)
Q Consensus 283 ~qLepLTeqQL~~I~~LqqstqqaEdALsq-gma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am-~KL~~Le~fv 360 (410)
..| +||++|...|..|.+..+.+...+.. .++ .+-+.+.++.. + +.|+ ..++.+...-
T Consensus 42 ~~L-~LTdeQkqqir~L~~~~r~~~~~~~~~~r~----~l~~Li~ad~f-------D--------eaa~ral~~~~~~~~ 101 (145)
T 3itf_A 42 DGI-SLTEHQRQQMRDLMQQARHEQPPVNVSELE----TMHRLVTAENF-------D--------ENAVRAQAEKMANEQ 101 (145)
T ss_dssp TTC-CCCHHHHHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHTCSSC-------C--------HHHHHHHHHHHHHHH
T ss_pred ccC-CCCHHHHHHHHHHHHHHHHHhhhccHHHHH----HHHHHHccCCC-------C--------HHHHHHHHHHHHHHH
Confidence 345 69999999999999888876554432 222 23333332111 1 1122 2223333444
Q ss_pred HHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc
Q 015258 361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALS 401 (410)
Q Consensus 361 ~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~rLRaLs 401 (410)
.+.--.|.++-.+|..||||-|-+.|---..+-...++.++
T Consensus 102 ~e~~v~r~k~~~qiy~vLTPEQk~ql~e~~~~r~~~~~~~~ 142 (145)
T 3itf_A 102 IARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVT 142 (145)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445788889999999999999998876666665555544
No 12
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=93.46 E-value=0.2 Score=41.11 Aligned_cols=48 Identities=29% Similarity=0.284 Sum_probs=36.0
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHhh---------h--hhHHhhHHHHHHHHhh
Q 015258 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLES---------S--RLKLTQLEQELQRARQ 170 (410)
Q Consensus 123 ~~k~~rrLaqNREaARkSRlRKKaYvqqLE~---------s--r~kL~qleqel~~ar~ 170 (410)
|++-..|--.|.+||||||-.+|.=.++++. . +.++.+|+.|++.-|.
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888899999999999999987776643 2 2345666666666665
No 13
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=85.92 E-value=0.39 Score=41.87 Aligned_cols=100 Identities=11% Similarity=0.120 Sum_probs=54.6
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHH
Q 015258 281 LVNQLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFL 360 (410)
Q Consensus 281 L~~qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fv 360 (410)
+...| +||++|...|..|.+..+..-.. .+....+.+.+.+.++.. + ...+. ..++.+...-
T Consensus 28 m~~~L-~LT~eQ~~qir~i~~~~r~~~~~---~~~~~r~~l~~Li~a~~f-------D----eaav~---al~~~~~~~~ 89 (138)
T 3oeo_A 28 MFKDL-NLTDAQKQQIREIMKGQRDQMKR---PPLEERRAMHDIITSDTF-------D----KVKAE---AQIAKMEEQR 89 (138)
T ss_dssp --CCS-CCCTTHHHHHHHHHHHHSSSSCC---CCTTHHHHHHHHHTCSSC-------C----HHHHH---HHHGGGSHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCC-------C----HHHHH---HHHHHHHHHH
Confidence 44666 69999999999998877654221 111222334443332111 1 11111 2223333344
Q ss_pred HHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Q 015258 361 RQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLR 398 (410)
Q Consensus 361 ~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~rLR 398 (410)
.+.--.|.++..+|..||||-|-+.|---+.+-..+++
T Consensus 90 ~e~~~~~~~~~~~~~~vLTPEQr~q~~~~~~kr~~~~~ 127 (138)
T 3oeo_A 90 KANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERP 127 (138)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHTC-------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhh
Confidence 44455788899999999999999998776655544443
No 14
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=82.47 E-value=15 Score=33.33 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=36.1
Q ss_pred cCCCchHHHHHHHhh-cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015258 270 GGFRSSELLKLLVNQ-LEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLA 326 (410)
Q Consensus 270 GGfRPSellkLL~~q-LepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~la 326 (410)
|||.+-. =+..+ .-+||++|..+|..|+++-+.+-.+|.+.|...++.+-+.+.
T Consensus 52 g~~~~g~---gm~~q~~LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~ 106 (175)
T 3lay_A 52 HHWGNND---GMWQQGGSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLT 106 (175)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCC---CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6665542 12233 237999999999999999999999999999999988877765
No 15
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=81.86 E-value=1.9 Score=36.36 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcCCCCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHhH
Q 015258 287 PLTEQQLVGIYNLQQSSQQAEDALS-QGMDALQQSLAETLANGSPSPSGTSGNVANYMGQMAMAMGKLGTLEGFLRQADN 365 (410)
Q Consensus 287 pLTeqQL~~I~~LqqstqqaEdALs-qgma~LQqsLAd~la~~~~~~~G~~~~v~~~~~qm~~Am~KL~~Le~fv~qAD~ 365 (410)
+||++|...|..|....+.+-.... ...+ .+-+.+.++...+ ....... +++ ...-.+.--
T Consensus 17 ~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~----~m~~Li~ad~FDE--------aaar~l~---~~~---~~~~~e~~v 78 (108)
T 3o39_A 17 NLTDAQKQQIREIMKGQRDQMKRPPLEERR----AMHDIIASDTFDK--------AKAEAQI---AKM---EEQRKANML 78 (108)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCCHHHHH----HHHHHHSSSSCCH--------HHHHHHH---HHT---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcccccHHHHH----HHHHHhccCCCCH--------HHHHHHH---HHH---HHHHHHHHH
Confidence 6999999999999887766533222 1122 2333333222210 0111111 211 112222223
Q ss_pred HHHHHHHHHHHhcChHHHHHHH
Q 015258 366 LRQQTLQQMHRILTTRQSARAL 387 (410)
Q Consensus 366 LR~qTL~qm~~ILTprQAArfL 387 (410)
.|.++=++|..||||-|-+.|-
T Consensus 79 ~~~r~~~qmy~lLTPEQk~q~~ 100 (108)
T 3o39_A 79 AHMETQNKIYNILTPEQKKQFN 100 (108)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 5677788999999999998864
No 16
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=81.23 E-value=3.5 Score=34.00 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=29.0
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHhhhh
Q 015258 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSR 155 (410)
Q Consensus 123 ~~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr 155 (410)
.=|-.||=-.||-+|..||-||-.-+..||.-.
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~ 57 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEK 57 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356779999999999999999999999999854
No 17
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=76.21 E-value=1.2 Score=36.86 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=23.3
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHh
Q 015258 124 QKTLRRLAQNREAARKSRLRKKAYVQQLE 152 (410)
Q Consensus 124 ~k~~rrLaqNREaARkSRlRKKaYvqqLE 152 (410)
-+-.||=..||.||+++|.||..-+..||
T Consensus 61 ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 61 IRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 45678889999999999999987665544
No 18
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=66.43 E-value=0.47 Score=40.84 Aligned_cols=30 Identities=37% Similarity=0.585 Sum_probs=13.0
Q ss_pred HHHHHhhhhhHHhhHHHHHHHHhhcceeec
Q 015258 147 YVQQLESSRLKLTQLEQELQRARQQGIFIS 176 (410)
Q Consensus 147 YvqqLE~sr~kL~qleqel~~ar~qg~~~~ 176 (410)
-|+|||.||.+|+++=.+|++.|+|..+..
T Consensus 76 vVe~LE~SR~~Ls~~V~~Le~~r~~d~~ln 105 (115)
T 2ksd_A 76 VVEQLEESRQRLSRLVQKLEEMRERDLSLN 105 (115)
T ss_dssp HHHCCCSSCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999987764
No 19
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=55.83 E-value=79 Score=26.03 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=33.3
Q ss_pred cCCChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 015258 285 LEPLTEQQ-----LVGIYNLQQSSQQAEDALSQGMDALQQSLAETLAN 327 (410)
Q Consensus 285 LepLTeqQ-----L~~I~~LqqstqqaEdALsqgma~LQqsLAd~la~ 327 (410)
...|.++| ..+|+.|+..+.++.++ .+||.+++....+.+..
T Consensus 8 ~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~-regl~Km~~vY~~nP~~ 54 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQQQLEERSRELQKEVDQ-REALKKMKDVYEKTPQM 54 (98)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHHHHHHHHCGGG
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcc
Confidence 34677877 46788899888888888 78899999888888764
No 20
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=53.13 E-value=6.9 Score=29.25 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHh
Q 015258 144 KKAYVQQLESSRLKLTQLEQELQRAR 169 (410)
Q Consensus 144 KKaYvqqLE~sr~kL~qleqel~~ar 169 (410)
++.||++||. ++.+||..|+..+
T Consensus 47 ~~~~~~~Le~---ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEK---RFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHCC-
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHh
Confidence 4589999999 9999999887644
No 21
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=51.29 E-value=10 Score=27.95 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHhh
Q 015258 144 KKAYVQQLESSRLKLTQLEQELQRARQ 170 (410)
Q Consensus 144 KKaYvqqLE~sr~kL~qleqel~~ar~ 170 (410)
++.||++||. ++.+||+.|...+.
T Consensus 42 ~~~~~~~L~~---ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 42 STKYLQQLQK---DLNDKTEENNRLKA 65 (70)
T ss_dssp EHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4579999998 99999999987654
No 22
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=45.11 E-value=9.2 Score=29.05 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=19.8
Q ss_pred HhhhhHHHHHHHHhhhhhHHhhHHHHHHHH
Q 015258 139 KSRLRKKAYVQQLESSRLKLTQLEQELQRA 168 (410)
Q Consensus 139 kSRlRKKaYvqqLE~sr~kL~qleqel~~a 168 (410)
+.++.++.||+.||. +|.+||..|+..
T Consensus 51 ~~~~~~~~~~~~L~~---ri~~LE~~l~~l 77 (81)
T 1hwt_C 51 EKELLKDNELKKLRE---RVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTC---
T ss_pred ccccchHHHHHHHHH---HHHHHHHHHHHh
Confidence 445667789999998 999999877653
No 23
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=44.55 E-value=25 Score=25.07 Aligned_cols=26 Identities=35% Similarity=0.558 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHh
Q 015258 144 KKAYVQQLESSRLKLTQLEQELQRAR 169 (410)
Q Consensus 144 KKaYvqqLE~sr~kL~qleqel~~ar 169 (410)
-|-|||.||.--..|..|..-|.-|+
T Consensus 8 lknyiqeleernaelknlkehlkfak 33 (46)
T 3he4_B 8 LKNYIQELEERNAELKNLKEHLKFAK 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 47899999998888888877776655
No 24
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=42.86 E-value=27 Score=26.58 Aligned_cols=23 Identities=52% Similarity=0.495 Sum_probs=16.2
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHhhhh
Q 015258 130 LAQNREAARKSRLRKKAYVQQLESSR 155 (410)
Q Consensus 130 LaqNREaARkSRlRKKaYvqqLE~sr 155 (410)
--.||-|+||+|-+=| ++||--|
T Consensus 6 ryknr~asrk~rakfk---n~lqh~r 28 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFK---QLLQHYR 28 (63)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3579999999998755 4454433
No 25
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=42.70 E-value=5 Score=33.18 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=18.0
Q ss_pred HHHHHHHhhHHHHHHhhhhHH
Q 015258 125 KTLRRLAQNREAARKSRLRKK 145 (410)
Q Consensus 125 k~~rrLaqNREaARkSRlRKK 145 (410)
+-.||=..||.||+++|.||.
T Consensus 66 rdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 66 RDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 346888999999999999984
No 26
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=40.70 E-value=2.8e+02 Score=27.36 Aligned_cols=90 Identities=11% Similarity=-0.004 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCCCCCcccchh-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC-hHHHHH
Q 015258 308 DALSQGMDALQQSLAETLANGSPSPSGTSGNVANYM-GQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILT-TRQSAR 385 (410)
Q Consensus 308 dALsqgma~LQqsLAd~la~~~~~~~G~~~~v~~~~-~qm~~Am~KL~~Le~fv~qAD~LR~qTL~qm~~ILT-prQAAr 385 (410)
.+|..++..++..+......+... .+....+...| .-+..|-.++..|...+.++...-..++.-...=-+ ..+--+
T Consensus 301 ~~L~~~l~~v~~~l~~~~~s~~~~-~~~~d~f~~~~~~fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~~~~~~~ 379 (411)
T 1ux5_A 301 KDFSQSIVNVERSVEIGNLSDSSK-FHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKIS 379 (411)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCTTS-SCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCcccc-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 457777778877664321111100 00011111111 234566678888888888887766666555433323 345566
Q ss_pred HHHHHHHHHHHHH
Q 015258 386 ALLAINDYFSRLR 398 (410)
Q Consensus 386 fLlAl~ey~~rLR 398 (410)
|+--+.+|...++
T Consensus 380 fF~~~~~F~~~f~ 392 (411)
T 1ux5_A 380 FFKKFADFINEYK 392 (411)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766666655443
No 27
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=39.09 E-value=43 Score=26.56 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=28.8
Q ss_pred HhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHHH
Q 015258 131 AQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ 166 (410)
Q Consensus 131 aqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel~ 166 (410)
.-|+.+|-..=-|||.|=+||+.--..+.+||+.+.
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~ 76 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQRE 76 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 346666766777888999999998899999998764
No 28
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=35.03 E-value=1.2e+02 Score=23.93 Aligned_cols=48 Identities=23% Similarity=0.417 Sum_probs=36.8
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHHHHHHHHHHHhHh
Q 015258 146 AYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRH 207 (410)
Q Consensus 146 aYvqqLE~sr~kL~qleqel~~ar~qg~~~~~~~~~~~~~~~~ga~~F~~eY~rWleEq~r~ 207 (410)
.+..+|+. .|.+|+..++.-...|..-| ..+..|...+.+|-....+.
T Consensus 25 ~~~~~i~~---~l~~L~~~v~~L~~~g~W~G-----------~A~~ay~~~~~~W~~~a~~l 72 (103)
T 4i0x_B 25 GFKEFVTE---NLDQLESRAQKLVQSGQWAG-----------AAAAAYSQAHKEWMDAAREL 72 (103)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHTSSCH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHhcCCCeec-----------hHHHHHHHHHHHHHHHHHHH
Confidence 67788888 88999988888777654433 35799999999998766544
No 29
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=34.32 E-value=29 Score=27.33 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=24.1
Q ss_pred HHHH-HHHhhhhhHHhhHHHHHHHHhhcceeec
Q 015258 145 KAYV-QQLESSRLKLTQLEQELQRARQQGIFIS 176 (410)
Q Consensus 145 KaYv-qqLE~sr~kL~qleqel~~ar~qg~~~~ 176 (410)
--|| |.||.+|..+..||||+.+-|=-=||+.
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQ 60 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQ 60 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3444 6799999999999999987764445543
No 30
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=30.16 E-value=65 Score=30.63 Aligned_cols=42 Identities=36% Similarity=0.440 Sum_probs=27.5
Q ss_pred HhhHHHH-HHhhhhHHHHHHHHhh------hhhHHhhHHHHHHHHhhcc
Q 015258 131 AQNREAA-RKSRLRKKAYVQQLES------SRLKLTQLEQELQRARQQG 172 (410)
Q Consensus 131 aqNREaA-RkSRlRKKaYvqqLE~------sr~kL~qleqel~~ar~qg 172 (410)
..|||.. .-+|-||+.-..++.- .-.||..|||||.||-...
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~ 147 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAES 147 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHh
Confidence 3577765 4556565555444432 1257899999999998754
No 31
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=30.12 E-value=33 Score=26.23 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhhhHHhhHHHHHHHHh
Q 015258 144 KKAYVQQLESSRLKLTQLEQELQRAR 169 (410)
Q Consensus 144 KKaYvqqLE~sr~kL~qleqel~~ar 169 (410)
++.||+.||. ++.+||..|+...
T Consensus 43 ~~~~~~~L~~---r~~~le~~l~~l~ 65 (89)
T 3coq_A 43 TRAHLTEVES---RLERLEQLFLLIF 65 (89)
T ss_dssp CHHHHHHHHH---HHHHHHHHHHHHC
T ss_pred cHHHHHHHHH---HHHHHHHHHHHHc
Confidence 3569999998 9999999998753
No 32
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.94 E-value=38 Score=26.39 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.9
Q ss_pred HHHHHHHhhhhhHHhhHHHHHHHHh
Q 015258 145 KAYVQQLESSRLKLTQLEQELQRAR 169 (410)
Q Consensus 145 KaYvqqLE~sr~kL~qleqel~~ar 169 (410)
+.||+.||. +|.+||..|+...
T Consensus 47 ~~~~~~Le~---rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLED---RLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHH---HHHHHHHHHHHhC
Confidence 569999998 9999999998754
No 33
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=25.71 E-value=40 Score=26.22 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=19.7
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHHhhcc
Q 015258 146 AYVQQLESSRLKLTQLEQELQRARQQG 172 (410)
Q Consensus 146 aYvqqLE~sr~kL~qleqel~~ar~qg 172 (410)
.||+.|+. ++..|+.|++..++|+
T Consensus 57 ~YI~~L~~---~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 57 EYIQYMRR---KNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHH---HHHHHHHHHHTHHHHC
T ss_pred HHHHHHHH---HHHHHHHHHHHHHhcC
Confidence 69999998 7888888888777663
No 34
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=25.66 E-value=18 Score=36.22 Aligned_cols=15 Identities=53% Similarity=0.523 Sum_probs=7.1
Q ss_pred HhhHHHHHHhhhhHH
Q 015258 131 AQNREAARKSRLRKK 145 (410)
Q Consensus 131 aqNREaARkSRlRKK 145 (410)
|+-||||||.|-|||
T Consensus 376 a~aR~aa~karer~~ 390 (390)
T 1s16_A 376 AQRRMRAAKKVVRKK 390 (390)
T ss_dssp HHHHHHHC-------
T ss_pred HHHHHHHHHHHhhcC
Confidence 588999999998886
No 35
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=23.70 E-value=5.8e+02 Score=25.80 Aligned_cols=176 Identities=15% Similarity=0.161 Sum_probs=85.6
Q ss_pred hhhHHHHHHHHHHHHhHhHHHHHHHhhcCCCCchHHHHHHHHHHhHHHHHHHHhhhhccchhhhhcCCCcchHhhhhhhh
Q 015258 190 AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWI 269 (410)
Q Consensus 190 a~~F~~eY~rWleEq~r~l~ELR~AL~s~~~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~llSg~W~Tp~ER~FLWi 269 (410)
+..|...|..=+.+....+.-|..|...-.....|+.+.+-++ .+.+|...-+.... .
T Consensus 170 ~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL-~~GN~mN~g~~~g~---------------------A 227 (457)
T 3obv_E 170 AILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTL-LVGNYMNAGSRNAG---------------------A 227 (457)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHHHHHTTTSTTCS---------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHhhhhccCCcCCC---------------------e
Confidence 5667777776666666777777777654444456777776665 23333332111111 2
Q ss_pred cCCCchHHHHHH---------------H-------hh-------cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015258 270 GGFRSSELLKLL---------------V-------NQ-------LEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQS 320 (410)
Q Consensus 270 GGfRPSellkLL---------------~-------~q-------LepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqs 320 (410)
-||+-+.|.||. . |. |.++.......+.+|+..+.+ |..++..++..
T Consensus 228 ~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~----L~~~l~~v~~~ 303 (457)
T 3obv_E 228 FGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQ----MKKQIADVERD 303 (457)
T ss_dssp SCBCGGGHHHHTTCBCSSTTCBHHHHHHHHHHHHCGGGGGHHHHCTTHHHHTTCCHHHHHHHHHH----HHHHHHHHHHH
T ss_pred eeEehHHHHHHHhhhcCCCCccHHHHHHHHHHHcCccccCChhhhhhHHhhccCCHHHHHHHHHH----HHHHHHHHHHH
Confidence 355555444432 1 22 222333323334455444443 45566666654
Q ss_pred HhhhhhcCCCCCCCCCCcccchh-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Q 015258 321 LAETLANGSPSPSGTSGNVANYM-GQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSR 396 (410)
Q Consensus 321 LAd~la~~~~~~~G~~~~v~~~~-~qm~~Am~KL~~Le~fv~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~r 396 (410)
+..... ... ........| .-+..|-.++..|+.....+..+-..++.-...=-...+.-+|+--+.+|...
T Consensus 304 l~~~~~--~~~---~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~~~~~eFF~~~~~F~~~ 375 (457)
T 3obv_E 304 VQNFPA--ATD---EKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNM 375 (457)
T ss_dssp HHSCCC--CSS---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHH
T ss_pred HHhccC--Ccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH
Confidence 432111 000 011111112 23455667888888888887776655555443211122334566666665433
No 36
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=21.90 E-value=6.3e+02 Score=25.54 Aligned_cols=188 Identities=15% Similarity=0.269 Sum_probs=91.6
Q ss_pred hhhHHHHHHHHHHHHhHhHHHHHHHhhcCCCCchHHHHHHHHHHhHHHHHHHHhhhhccchhhhhcCCCcchHhhhhhhh
Q 015258 190 AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWI 269 (410)
Q Consensus 190 a~~F~~eY~rWleEq~r~l~ELR~AL~s~~~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~llSg~W~Tp~ER~FLWi 269 (410)
+..|...|..=+.+....+.-|..|...-.....|+.+++-++ .+.+|...- .-..+.-|.+ +++-+ |
T Consensus 181 ~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL-~~GN~mN~g-~rg~A~GFkL------~sL~K----L 248 (483)
T 2j1d_G 181 SLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVL-AFGNYMNKG-QRGNAYGFKI------SSLNK----I 248 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-HHHHHHSCS-SSCCCSCCCG------GGGGG----G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-HHhhhhccC-CCCCceeeeh------HHHHh----h
Confidence 5667777777777777777777777654333346777777666 333333221 0001111111 01100 1
Q ss_pred cCCCc-----hHHHHHHH-------hh-------cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015258 270 GGFRS-----SELLKLLV-------NQ-------LEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGSP 330 (410)
Q Consensus 270 GGfRP-----SellkLL~-------~q-------LepLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~la~~~~ 330 (410)
...+- ..|+|.|. |. |..+.......+.+|...+. .|..++..++..+...-... .
T Consensus 249 ~d~Ks~~d~k~TLLhylv~~v~~~~p~l~~f~~eL~~v~~Askv~~~~l~~~~~----~L~~~l~~v~~~l~~~~~~~-~ 323 (483)
T 2j1d_G 249 ADTKSSIDKNITLLHYLITIVENKYPSVLNLNEELRDIPQAAKVNMTELDKEIS----TLRSGLKAVETELEYQKSQP-P 323 (483)
T ss_dssp GGSBCSSCTTCBHHHHHHHHHHHHCGGGGGHHHHTTTHHHHHTCCHHHHHHHHH----HHHHHHHHHHHHHHHHHTSC-C
T ss_pred hhcccCCCCCccHHHHHHHHHHHhCchhhchHHHHhhHHHHhcCCHHHHHHHHH----HHHHHHHHHHHHHHHhhccC-C
Confidence 11111 12444332 22 22233333333444444443 46666666666554432111 1
Q ss_pred CCCCCCCcccchh-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Q 015258 331 SPSGTSGNVANYM-GQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRL 397 (410)
Q Consensus 331 ~~~G~~~~v~~~~-~qm~~Am~KL~~Le~fv~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~rL 397 (410)
.+ .......| .-+..|-.++..|+..+..+...-..++.-.-.=-+..+.-+|+--+.+|...+
T Consensus 324 ~~---~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~~~~~~~fF~~~~~F~~~f 388 (483)
T 2j1d_G 324 QP---GDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGKIQPDEFFGIFDQFLQAV 388 (483)
T ss_dssp CT---TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSCCHHHHHHHHHHHHHHH
T ss_pred Cc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHH
Confidence 10 11111122 235567788888999999888877777765533222234456776666665444
No 37
>1js9_A Coat protein, capsid protein; plant virus, bromoviruses, BMV icosahedral virus; 3.40A {Brome mosaic virus} SCOP: b.121.4.5
Probab=21.64 E-value=19 Score=32.73 Aligned_cols=15 Identities=47% Similarity=0.652 Sum_probs=0.0
Q ss_pred HhhHHHHHHhhhhHH
Q 015258 131 AQNREAARKSRLRKK 145 (410)
Q Consensus 131 aqNREaARkSRlRKK 145 (410)
||.|.||||-|++||
T Consensus 12 aQRRaaaR~nr~~~~ 26 (189)
T 1js9_A 12 AQRRAAARRNRWTAR 26 (189)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhhhhcc
Confidence 788999999999888
No 38
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=20.72 E-value=30 Score=24.88 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=12.6
Q ss_pred HHHHHHHHhhhhhHHhhHH
Q 015258 144 KKAYVQQLESSRLKLTQLE 162 (410)
Q Consensus 144 KKaYvqqLE~sr~kL~qle 162 (410)
++.||++||. +|.+||
T Consensus 50 ~~~~~~~Le~---rl~~LE 65 (66)
T 1d66_A 50 TRAHLTEVES---RLERLE 65 (66)
T ss_dssp CHHHHHHHHH---HHTTC-
T ss_pred cHHHHHHHHH---HHHHHc
Confidence 3579999999 888887
Done!