Query 015258
Match_columns 410
No_of_seqs 180 out of 243
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 09:27:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015258.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015258hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sknp_ a.37.1.1 (P:) Skn-1 {C 50.7 4.5 0.00033 30.4 2.7 19 127-145 50-68 (74)
2 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 42.8 8.4 0.00061 28.2 3.0 28 148-175 32-59 (67)
3 d1v9da_ a.207.1.1 (A:) Diaphan 41.2 1E+02 0.0075 27.1 11.3 179 189-398 93-301 (332)
4 d2c35a1 a.60.8.2 (A:14-142) RN 27.9 25 0.0018 27.8 4.0 78 220-299 40-120 (129)
5 d1uuja_ a.221.1.1 (A:) Lissenc 22.8 28 0.002 25.9 3.0 19 377-395 1-19 (76)
6 d1uklc_ a.38.1.1 (C:) SREBP-2 20.1 35 0.0026 23.5 3.0 21 146-169 33-53 (61)
7 d1ux5a_ a.207.1.1 (A:) Bni1 {B 19.7 3E+02 0.022 24.7 14.6 191 190-399 182-393 (411)
8 d1zbdb_ g.50.1.1 (B:) Effector 18.3 67 0.0049 24.8 4.7 39 286-324 1-39 (124)
9 d1ykhb1 a.252.1.1 (B:2-130) RN 17.6 1.3E+02 0.0093 23.7 6.4 35 284-318 81-115 (129)
10 d1wa8a1 a.25.3.1 (A:1-99) ESAT 16.6 1.7E+02 0.013 20.7 9.9 67 123-215 6-75 (99)
No 1
>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=50.70 E-value=4.5 Score=30.40 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=17.3
Q ss_pred HHHHHhhHHHHHHhhhhHH
Q 015258 127 LRRLAQNREAARKSRLRKK 145 (410)
Q Consensus 127 ~rrLaqNREaARkSRlRKK 145 (410)
.||=..|+-||+.+|.||-
T Consensus 50 IRRRGKNKvAAqnCRKRKl 68 (74)
T d1sknp_ 50 IRRRGKNKVAARTCRQRRT 68 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHhhh
Confidence 5888999999999999984
No 2
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.76 E-value=8.4 Score=28.24 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=22.6
Q ss_pred HHHHhhhhhHHhhHHHHHHHHhhcceee
Q 015258 148 VQQLESSRLKLTQLEQELQRARQQGIFI 175 (410)
Q Consensus 148 vqqLE~sr~kL~qleqel~~ar~qg~~~ 175 (410)
-|.||.++..+..|||||.+-|=.-||+
T Consensus 32 E~eLerCk~~irrLeqel~~ErF~~iYL 59 (67)
T d1k1fa_ 32 EQELERAKASIRRLEQEVNQERFRMIYL 59 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999998766444554
No 3
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.15 E-value=1e+02 Score=27.12 Aligned_cols=179 Identities=15% Similarity=0.160 Sum_probs=86.4
Q ss_pred hhhhHHHHHHHHHHHHhHhHHHHHHHhhcCCCCchHHHHHHHHHHhHHHHHHHHhhhhccchhhhhcCCCcchHhhhhhh
Q 015258 189 GAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMW 268 (410)
Q Consensus 189 ga~~F~~eY~rWleEq~r~l~ELR~AL~s~~~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~llSg~W~Tp~ER~FLW 268 (410)
.+..|...|..=+++....+..+.+|...-.....|+.+..-++ .+.+|...-+.-..
T Consensus 93 ~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~~L~~iL-~~GN~mN~g~~~g~--------------------- 150 (332)
T d1v9da_ 93 NAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTL-LVGNYMNAGSRNAG--------------------- 150 (332)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHH-Hhcchhcccccccc---------------------
Confidence 35666677776666666777777766654444455666555544 23333321111011
Q ss_pred hcCCCchHHHHH---------------HH-------h-------hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015258 269 IGGFRSSELLKL---------------LV-------N-------QLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQ 319 (410)
Q Consensus 269 iGGfRPSellkL---------------L~-------~-------qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQq 319 (410)
.-||+-+.|.|| |. | .|.++.......+.++...+ ..|..++..++.
T Consensus 151 A~GFkL~sL~kL~d~Ks~d~~~tLL~~iv~~~~~~~p~l~~~~~eL~~v~~ask~~~~~l~~~~----~~l~~~l~~~~~ 226 (332)
T d1v9da_ 151 AFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRVSAENLQKSL----DQMKKQIADVER 226 (332)
T ss_dssp ------CCHHHHHHSBCSSTTSBHHHHHHHHHHHSCCTTSSGGGGCTTHHHHHHCCHHHHHHHH----HHHHHHHHHHHH
T ss_pred ccccCHHHHHhHhhccCCCCCccHHHHHHHHHHHhCchhccchhhhhhHHHHhcCCHHHHHHHH----HHHHHHHHHHHH
Confidence 245544444443 32 1 22223333333444444433 345555666665
Q ss_pred HHhhhhhcCCCCCCCCCCcccch-hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Q 015258 320 SLAETLANGSPSPSGTSGNVANY-MGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLR 398 (410)
Q Consensus 320 sLAd~la~~~~~~~G~~~~v~~~-~~qm~~Am~KL~~Le~fv~qAD~LR~qTL~qm~~ILTprQAArfLlAl~ey~~rLR 398 (410)
.+...... .. ........ ..-+..|..++..|+..+.+++..-.++..-.-+--+..+.-+|+--+.+|...+.
T Consensus 227 ~l~~~~~~---~~--~~d~f~~~~~~Fl~~a~~~l~~l~~~~~~~~~~~~~~~~yfgEd~~~~~~~efF~~~~~F~~~~~ 301 (332)
T d1v9da_ 227 DVQNFPAA---TD--EKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFL 301 (332)
T ss_dssp HHHTCCCC---SS--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHhcccc---cc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 55432211 00 01111111 22356677899999999999998877777766544444566788888777765543
No 4
>d2c35a1 a.60.8.2 (A:14-142) RNA polymerase II subunit RBP4 (RpoF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.95 E-value=25 Score=27.83 Aligned_cols=78 Identities=18% Similarity=0.159 Sum_probs=57.2
Q ss_pred CCchHHHHHHHHHHhHHHHHHHHhhhhccchhhhhcCCCcchHhhhhhhhcCCCchHH--HHHHHhhcC-CChHHHHHHH
Q 015258 220 GDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSEL--LKLLVNQLE-PLTEQQLVGI 296 (410)
Q Consensus 220 ~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~llSg~W~Tp~ER~FLWiGGfRPSel--lkLL~~qLe-pLTeqQL~~I 296 (410)
.+.+|..+..+.+.|-...-+.+..-+...|..+++..=.+++|.+ =|+..+|+.. ++.|.+.++ .+|++++..|
T Consensus 40 ~~~~l~~~~~ktl~Yl~~fak~~~~es~~~~~~ll~~~~L~~~E~~--~i~Nl~P~~~~El~~li~~l~~r~see~l~~i 117 (129)
T d2c35a1 40 DEQELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELA--CLANLCPETAEESKALIPSLEGRFEDEELQQI 117 (129)
T ss_dssp SSCCCCHHHHHHHHHHHHTCSCCSHHHHHHHHHHHHTSSCCHHHHH--HHHHHCCSSHHHHHHHCGGGTTTSCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhcccCCCHHHHH--HHhCCCCCCHHHHHHHHHHhccCCCHHHHHHH
Confidence 3567888888888765443344566677778888887778999987 4688888864 556778885 6899998877
Q ss_pred HHH
Q 015258 297 YNL 299 (410)
Q Consensus 297 ~~L 299 (410)
=+.
T Consensus 118 Ld~ 120 (129)
T d2c35a1 118 LDD 120 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 5
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.77 E-value=28 Score=25.91 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=17.2
Q ss_pred hcChHHHHHHHHHHHHHHH
Q 015258 377 ILTTRQSARALLAINDYFS 395 (410)
Q Consensus 377 ILTprQAArfLlAl~ey~~ 395 (410)
|||+||+.+-=-||.+|+.
T Consensus 1 iLt~rQ~eeL~kaI~~Yl~ 19 (76)
T d1uuja_ 1 VLSQRQRDELNRAIADYLR 19 (76)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7999999999999999975
No 6
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.06 E-value=35 Score=23.53 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=15.1
Q ss_pred HHHHHHhhhhhHHhhHHHHHHHHh
Q 015258 146 AYVQQLESSRLKLTQLEQELQRAR 169 (410)
Q Consensus 146 aYvqqLE~sr~kL~qleqel~~ar 169 (410)
.||+.|+. +...|++|...-+
T Consensus 33 ~YI~~Lq~---~~~~L~~e~~~L~ 53 (61)
T d1uklc_ 33 DYIKYLQQ---VNHKLRQENMVLK 53 (61)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 69999999 5556666665444
No 7
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.66 E-value=3e+02 Score=24.66 Aligned_cols=191 Identities=12% Similarity=0.109 Sum_probs=97.7
Q ss_pred hhhHHHHHHHHHHHHhHhHHHHHHHhhcCCCCchHHHHHHHHHHhHHHHHHHHhhhhccchhhhhcCCCcchHhhhhhhh
Q 015258 190 AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWI 269 (410)
Q Consensus 190 a~~F~~eY~rWleEq~r~l~ELR~AL~s~~~D~eLr~LVd~~lsHY~eyfr~Ks~AAk~DVf~llSg~W~Tp~ER~FLWi 269 (410)
+..|...|..=+++....+..|..|...-.....|+.+..-+++ +.+|... + ..+++-|-+ .++..|
T Consensus 182 ~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~-~GN~lN~-g-~~~A~GFkL----------~sL~kL 248 (411)
T d1ux5a_ 182 ALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILA-VGNFMND-T-SKQAQGFKL----------STLQRL 248 (411)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHSC-G-GGCCSCCCG----------GGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH-HhhhhcC-C-CCCcceeeh----------HHHHHh
Confidence 45566666666677777788888887665556778888877763 4444331 1 011221111 112233
Q ss_pred cCCCc----hHHHHHHHh-------hcCCChHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Q 015258 270 GGFRS----SELLKLLVN-------QLEPLTEQQLVGI--------YNLQQSSQQAEDALSQGMDALQQSLAETLANGSP 330 (410)
Q Consensus 270 GGfRP----SellkLL~~-------qLepLTeqQL~~I--------~~LqqstqqaEdALsqgma~LQqsLAd~la~~~~ 330 (410)
...|- ..|++.|.. .+..+.+ ++..| ..+...+ ..|..++..++..+-..-.....
T Consensus 249 ~d~Ks~d~~~tLL~yiv~~~~~~~p~l~~~~~-el~~v~~a~~~~~~~l~~~~----~~L~~~l~~i~~~~~~~~~~~~~ 323 (411)
T d1ux5a_ 249 TFIKDTTNSMTFLNYVEKIVRLNYPSFNDFLS-ELEPVLDVVKVSIEQLVNDC----KDFSQSIVNVERSVEIGNLSDSS 323 (411)
T ss_dssp SSCBCTTSCSBHHHHHHHHHHHHCGGGGGHHH-HTHHHHHHTTCCHHHHHHHH----HHHHHHHHHHHHHHHHSTTTCTT
T ss_pred hhccCCCCCeeHHHHHHHHHHHhCcHhhccHH-HHHHHHHHhcCCHHHHHHHH----HHHHHHHHHHHHHHHhhcccccc
Confidence 33332 235555542 3323322 22222 2333322 23444555555554322111110
Q ss_pred CCCCCCCcccc-hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHH
Q 015258 331 SPSGTSGNVAN-YMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRIL-TTRQSARALLAINDYFSRLRA 399 (410)
Q Consensus 331 ~~~G~~~~v~~-~~~qm~~Am~KL~~Le~fv~qAD~LR~qTL~qm~~IL-TprQAArfLlAl~ey~~rLRa 399 (410)
.. .....+.. +..-+..|..++..|+..+.+++..-.+++.-.-+-- ++.+--+|+--+.+|...++.
T Consensus 324 ~~-~~~d~f~~~~~~fl~~~~~~~~~l~~~~~~~~~~~~~~~~yfGEd~~~~~~~~~fF~~~~~F~~~~~~ 393 (411)
T d1ux5a_ 324 KF-HPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEYKK 393 (411)
T ss_dssp SS-CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 00 00111111 2334556778888899999988877666655543222 356677899888888777654
No 8
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=18.31 E-value=67 Score=24.77 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=30.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015258 286 EPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQQSLAET 324 (410)
Q Consensus 286 epLTeqQL~~I~~LqqstqqaEdALsqgma~LQqsLAd~ 324 (410)
++||+++...|.+.-++-...+..-.+++.++.+.+.+.
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~ 39 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETM 39 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999888887777777777777778888888877664
No 9
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.59 E-value=1.3e+02 Score=23.74 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=27.7
Q ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015258 284 QLEPLTEQQLVGIYNLQQSSQQAEDALSQGMDALQ 318 (410)
Q Consensus 284 qLepLTeqQL~~I~~LqqstqqaEdALsqgma~LQ 318 (410)
.++.=.+.|+.+|..|+.+.+.+|..+.+.+.+..
T Consensus 81 ~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e 115 (129)
T d1ykhb1 81 GVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 115 (129)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678999999999999999998877766544
No 10
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.56 E-value=1.7e+02 Score=20.67 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=43.5
Q ss_pred CHHHHHHHHhhHHHHHHhhhhHHHHHHHHhhhhhHHhhHHHHHHHHhhcceeeccCCCCCCCCCCchhhhHHHHHHHHHH
Q 015258 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLE 202 (410)
Q Consensus 123 ~~k~~rrLaqNREaARkSRlRKKaYvqqLE~sr~kL~qleqel~~ar~qg~~~~~~~~~~~~~~~~ga~~F~~eY~rWle 202 (410)
||-++++.|.+=+ .....|+. .|..|++.+..-.. -.. |.++..|...|.+|-.
T Consensus 6 d~~~l~~~A~~~~----------~~~~~l~~---~l~~l~~~v~~l~~--~W~-----------G~A~~af~~~~~~w~~ 59 (99)
T d1wa8a1 6 DAATLAQEAGNFE----------RISGDLKT---QIDQVESTAGSLQG--QWR-----------GAAGTAAQAAVVRFQE 59 (99)
T ss_dssp CHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHHHT--SCC-----------SSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----------HHHHHHHH---HHHHHHHHHHHHHH--Hhh-----------hhHHHHHHHHHHHHHH
Confidence 8888988887432 34455555 66777766655432 122 2468999999999988
Q ss_pred HHhHh---HHHHHHHh
Q 015258 203 EHNRH---IVELRAAV 215 (410)
Q Consensus 203 Eq~r~---l~ELR~AL 215 (410)
.-.+. |.++...|
T Consensus 60 ~~~~l~~~L~~i~~~L 75 (99)
T d1wa8a1 60 AANKQKQELDEISTNI 75 (99)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 77665 44445555
Done!