BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015259
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 84/370 (22%), Positives = 142/370 (38%), Gaps = 71/370 (19%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYEEREFALYVS 70
A I+ G G R P++ PK P+ +P++ + I ++ + R+ + VS
Sbjct: 3 AFILAAGS--GERLEPITHTRPKAFVPILSKPLIEYQIEYLRKCGI------RDITVIVS 54
Query: 71 SISNEL------RIPVRYLRED-KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPL 123
S + E I + ++D K G+A F D + F ++C L
Sbjct: 55 SKNKEYFEKKLKEISIVTQKDDIKGTGAAILSAKFNDEALIIYGDLFFSNEKEICNIITL 114
Query: 124 PEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGV 183
E I+ +KVS + +G LV D + N L EKPE S+LIN G+
Sbjct: 115 KE-----------NAIIGVKVS--NPKDYGVLVLD-NQNNLSKIIEKPEIPPSNLINAGI 160
Query: 184 YVFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242
Y DIF + +S S+R + E TD + L +A
Sbjct: 161 YKLNSDIFTYLDKISISERGELE------------------LTDAINL-------MAKDH 195
Query: 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTK-------------- 288
++ E +W I P + + L + S NL D K
Sbjct: 196 RVKVIEYEGYWMDIGKPWNIIDVNKWALDNL-VFSQNLGNVEDNVKIKGKVIIEEDAEIK 254
Query: 289 -NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTN 347
I G VY+ ++I P + + P + +IGA V + +I++G +I + V +
Sbjct: 255 SGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGD 314
Query: 348 AIVGWKSSIG 357
+++ + G
Sbjct: 315 SVIAEDVNFG 324
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 37/206 (17%)
Query: 21 GTRFRPLSLNIPKPLFPLGGQPMVHHPI-----SACKRIYLVGFYEEREFALY------- 68
GTRF P++ IPK + P+ +P++ + + + C+ + +V +R Y
Sbjct: 13 GTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEI 72
Query: 69 ------------VSSISNEL-RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNC 115
+ SI N + + Y+R+ + G A+ LI N +L
Sbjct: 73 EHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALI--GNEPFAVILAD 130
Query: 116 DVCCSFPLP----EMLDAHRNYGGMGTILVIKVSAESASQFGELVA---DPDTNELLHYT 168
D+C S P +M ++ Y + + +V+ E S++G + + E+
Sbjct: 131 DLCISHDHPSVLKQMTSLYQKY-QCSIVAIEEVALEEVSKYGVIRGEWLEEGVYEIKDMV 189
Query: 169 EKP--ETFVSDLINCGVYVFTPDIFN 192
EKP E S+L G Y+ TPDIF
Sbjct: 190 EKPNQEDAPSNLAVIGRYILTPDIFE 215
>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
pdb|4AC3|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
Length = 459
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 86/390 (22%), Positives = 154/390 (39%), Gaps = 77/390 (19%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHH------PISACKRIYLVGFYEERE 64
A+I+ G KGTR + ++PK L + G M+ H I K + +VG E
Sbjct: 5 AIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAEL- 58
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD--VCCSFP 122
+ L ++ + + G+ A+ + I+E H ++ D +
Sbjct: 59 -------VEEVLAEQTEFVTQSEQLGTGHAVM-MTEPILEGLSGHTLVIAGDTPLITGES 110
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFG-ELVADPDTNELLHYTEKPET--FVSDL- 178
L ++D H N+ + TIL +AE+ + FG + D E+L E+ + F +
Sbjct: 111 LKNLIDFHINHKNVATIL----TAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIK 166
Query: 179 -INCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSA-TRNLTTDFVRLDQDILS 236
IN G YVF D E L FEAL++ T N ++ D +
Sbjct: 167 EINTGTYVF----------------DNERL-----FEALKNINTNNAQGEYYITDVIGIF 205
Query: 237 PLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDV 296
G+K + Y DF E + + + + R+ +++ G
Sbjct: 206 RETGEK-VGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVN-----------GVS 253
Query: 297 YVHPSA-------KIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAI 349
+V+P A +I P +I NV + +IGA L + + I AV+TN++
Sbjct: 254 FVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSM 313
Query: 350 VGWKS-----SIGRWSRVQAEGDFNAKLGI 374
+ S ++G ++ ++ A++ I
Sbjct: 314 IEESSVADGVTVGPYAHIRPNSSLGAQVHI 343
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
Length = 468
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 86/390 (22%), Positives = 154/390 (39%), Gaps = 77/390 (19%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHH------PISACKRIYLVGFYEERE 64
A+I+ G KGTR + ++PK L + G M+ H I K + +VG E
Sbjct: 14 AIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAEL- 67
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD--VCCSFP 122
+ L ++ + + G+ A+ + I+E H ++ D +
Sbjct: 68 -------VEEVLAGQTEFVTQSEQLGTGHAVM-MTEPILEGLSGHTLVIAGDTPLITGES 119
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFG-ELVADPDTNELLHYTEKPET--FVSDL- 178
L ++D H N+ + TIL +AE+ + FG + D E+L E+ + F +
Sbjct: 120 LKNLIDFHINHKNVATIL----TAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIK 175
Query: 179 -INCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQS-ATRNLTTDFVRLDQDILS 236
IN G YVF D E L FEAL++ T N ++ D +
Sbjct: 176 EINTGTYVF----------------DNERL-----FEALKNINTNNAQGEYYITDVIGIF 214
Query: 237 PLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDV 296
G+K + Y DF E + + + + R+ +++ G
Sbjct: 215 RETGEK-VGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVN-----------GVS 262
Query: 297 YVHPSA-------KIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAI 349
+V+P A +I P +I NV + +IGA L + + I AV+TN++
Sbjct: 263 FVNPEATYIDIDVEIAPEVQIEANVILKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSM 322
Query: 350 VGWKS-----SIGRWSRVQAEGDFNAKLGI 374
+ S ++G ++ ++ A++ I
Sbjct: 323 IEESSVADGVTVGPYAHIRPNSSLGAQVHI 352
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 14/190 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREF 65
+I+ GG G+R P++ K L P+G PM++H + K+ I ++ E
Sbjct: 27 GIILAGGT--GSRLYPITKVTNKHLLPVGRYPMIYHAVYKLKQCDITDIMIITGKEHMGD 84
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ E + Y +DK G A AL D + N + +L ++ P
Sbjct: 85 VVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFV--GNDRMVVILGDNIFSDDIRPY 142
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+ + G +L S + +FG VA+ +++ EKP+ S G+Y+
Sbjct: 143 VEEFTNQKEGAKVLL---QSVDDPERFG--VANIQNRKIIEIEEKPKEPKSSYAVTGIYL 197
Query: 186 FTPDIFNAIQ 195
+ +F+ I+
Sbjct: 198 YDSKVFSYIK 207
>pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
Length = 459
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 85/390 (21%), Positives = 153/390 (39%), Gaps = 77/390 (19%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHH------PISACKRIYLVGFYEERE 64
A+I+ G KGTR + ++PK L + G M+ H I K + +VG E
Sbjct: 5 AIILAAG--KGTRMKS---DLPKVLHKVAGISMLEHVFRSVGAIQPEKTVTVVGHKAEL- 58
Query: 65 FALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD--VCCSFP 122
+ L ++ + + G+ A+ + I+E H ++ D +
Sbjct: 59 -------VEEVLAGQTEFVTQSEQLGTGHAVM-MTEPILEGLSGHTLVIAGDTPLITGES 110
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFG-ELVADPDTNELLHYTEKPET--FVSDL- 178
L ++D H N+ + TIL +AE+ + FG + D E+L E+ + F +
Sbjct: 111 LKNLIDFHINHKNVATIL----TAETDNPFGYGRIVRNDNAEVLRIVEQKDATDFEKQIK 166
Query: 179 -INCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQS-ATRNLTTDFVRLDQDILS 236
IN G YVF D E L FEAL++ T N ++ D +
Sbjct: 167 EINTGTYVF----------------DNERL-----FEALKNINTNNAQGEYYITDVIGIF 205
Query: 237 PLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDV 296
G+K + Y DF E + + + + R+ +++ G
Sbjct: 206 RETGEK-VGAYTLKDFDESLGVNDRVALATAESVMRRRINHKHMVN-----------GVS 253
Query: 297 YVHPSA-------KIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAI 349
+V+P A +I +I NV++ +IGA L + + I AV+TN++
Sbjct: 254 FVNPEATYIDIDVEIASEVQIEANVTLKGQTKIGAETVLTNGTYVVDSTIGAGAVITNSM 313
Query: 350 VGWKSS-----IGRWSRVQAEGDFNAKLGI 374
+ S +G ++ ++ A++ I
Sbjct: 314 IEESSVADGVIVGPYAHIRPNSSLGAQVHI 343
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 95/236 (40%), Gaps = 41/236 (17%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P++ + K L P+ +P +++P+S + I ++ E++ +
Sbjct: 6 GIILAGG--SGTRLHPITRGVSKQLLPIYDKPXIYYPLSVLXLAGIREILIITTPEDKGY 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ +E I + Y + P G A A +I E LN + C
Sbjct: 64 FQRLLGDGSEFGIQLEYAEQPSPDGLAQAF-----IIGET------FLNGEPSC------ 106
Query: 126 MLDAHRNYGGMG---TILVIKVSAESASQFGELVADPDTNELLHY---------TEKPET 173
++ + G G + + E A+ FG V DP+ ++ + EKP+
Sbjct: 107 LVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVXDPERFGVVEFDDNFRAISLEEKPKQ 166
Query: 174 FVSDLINCGVYVFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFV 228
S+ G+Y + + + V S+R + E ++S NLT + +
Sbjct: 167 PKSNWAVTGLYFYDSKVVEYAKQVKPSERGELE----ITSINQXYLEAGNLTVELL 218
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGADDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-ELLHYTEKPETFVSDLINCGVY 184
+++A N T+ V+ ++G V + D N + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYG--VVEFDKNGTAISLEEKPLEPKSNYAVTGLY 177
Query: 185 VFTPDI 190
+ D+
Sbjct: 178 FYDNDV 183
>pdb|3SPT|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Acetyl Coenzyme A And
Uridine-Diphosphate-N-Acetylglucosamine
pdb|3ST8|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Coenzyme A, Glucosamine 1-Phosphate And
Uridine-Diphosphate-N- Acetylglucosamine
Length = 501
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/398 (20%), Positives = 159/398 (39%), Gaps = 63/398 (15%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLVGFYEEREFA 66
+++ GP GTR R + PK L L G+ M+ H + A +R+ +V ++ + A
Sbjct: 16 LVLAAGP--GTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIA 70
Query: 67 LYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD--VCCSFPLP 124
V +++ L + +D+P G+ A+ + +D ++ + + D + + L
Sbjct: 71 PLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLA 130
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDL----IN 180
+++ HR T+L + + +G ++ D +E++ E+ + S +N
Sbjct: 131 DLIATHRAVSAAVTVLTTTL--DDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREVN 187
Query: 181 CGVYVFT-PDIFNAIQGVSSQ---------------RKDRENLRRVSSFEALQSATRNLT 224
GVY F + +A+ +SS R D + + ++ A N
Sbjct: 188 AGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNR 247
Query: 225 TDFVRLDQDILSPLAGKKQLYTYETMD---FW---------EQIKTPGMSL----KCSGL 268
L ++ + QL +D W + + PG L + G
Sbjct: 248 VQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGR 307
Query: 269 YLAQFRLTSPNLLASGDGTK------NATIIGDVYVHPSAKIHPTAKIGPNVSISANARI 322
+ T ++ A GDG +++ IGD A + P + P ++ A+ ++
Sbjct: 308 CVVGPDTTLTDV-AVGDGASVVRTHGSSSSIGD-----GAAVGPFTYLRPGTALGADGKL 361
Query: 323 GAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWS 360
GA V + + I G ++ V +A +G S+IG S
Sbjct: 362 GAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASS 399
>pdb|3D8V|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine
pdb|3D98|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis,
Ligand-Free Form
pdb|3DJ4|A Chain A, Crystal Structure Of Glmu From Mycobacterium Tuberculosis
In Complex With Uridine-Diphosphate-N-Acetylglucosamine.
pdb|3DK5|A Chain A, Crystal Structure Of Apo-Glmu From Mycobacterium
Tuberculosis
Length = 495
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/398 (20%), Positives = 159/398 (39%), Gaps = 63/398 (15%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLVGFYEEREFA 66
+++ GP GTR R + PK L L G+ M+ H + A +R+ +V ++ + A
Sbjct: 10 LVLAAGP--GTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIA 64
Query: 67 LYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD--VCCSFPLP 124
V +++ L + +D+P G+ A+ + +D ++ + + D + + L
Sbjct: 65 PLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLA 124
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDL----IN 180
+++ HR T+L + + +G ++ D +E++ E+ + S +N
Sbjct: 125 DLIATHRAVSAAVTVLTTTL--DDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREVN 181
Query: 181 CGVYVFT-PDIFNAIQGVSSQ---------------RKDRENLRRVSSFEALQSATRNLT 224
GVY F + +A+ +SS R D + + ++ A N
Sbjct: 182 AGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNR 241
Query: 225 TDFVRLDQDILSPLAGKKQLYTYETMD---FW---------EQIKTPGMSL----KCSGL 268
L ++ + QL +D W + + PG L + G
Sbjct: 242 VQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGR 301
Query: 269 YLAQFRLTSPNLLASGDGTK------NATIIGDVYVHPSAKIHPTAKIGPNVSISANARI 322
+ T ++ A GDG +++ IGD A + P + P ++ A+ ++
Sbjct: 302 CVVGPDTTLTDV-AVGDGASVVRTHGSSSSIGD-----GAAVGPFTYLRPGTALGADGKL 355
Query: 323 GAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWS 360
GA V + + I G ++ V +A +G S+IG S
Sbjct: 356 GAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASS 393
>pdb|3FOQ|A Chain A, Crystal Structure Of N-Acetylglucosamine-1-Phosphate
Uridyltransferase (Glmu) From Mycobacterium Tuberculosis
In A Cubic Space Group
Length = 503
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/398 (20%), Positives = 159/398 (39%), Gaps = 63/398 (15%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLVGFYEEREFA 66
+++ GP GTR R + PK L L G+ M+ H + A +R+ +V ++ + A
Sbjct: 18 LVLAAGP--GTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIA 72
Query: 67 LYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD--VCCSFPLP 124
V +++ L + +D+P G+ A+ + +D ++ + + D + + L
Sbjct: 73 PLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLA 132
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDL----IN 180
+++ HR T+L + + +G ++ D +E++ E+ + S +N
Sbjct: 133 DLIATHRAVSAAVTVLTTTL--DDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREVN 189
Query: 181 CGVYVFT-PDIFNAIQGVSSQ---------------RKDRENLRRVSSFEALQSATRNLT 224
GVY F + +A+ +SS R D + + ++ A N
Sbjct: 190 AGVYAFDIAALRSALSRLSSNNAQQELYLTDVIAILRSDGQTVHASHVDDSALVAGVNNR 249
Query: 225 TDFVRLDQDILSPLAGKKQLYTYETMD---FW---------EQIKTPGMSL----KCSGL 268
L ++ + QL +D W + + PG L + G
Sbjct: 250 VQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVDVTIGRDTVIHPGTQLLGRTQIGGR 309
Query: 269 YLAQFRLTSPNLLASGDGTK------NATIIGDVYVHPSAKIHPTAKIGPNVSISANARI 322
+ T ++ A GDG +++ IGD A + P + P ++ A+ ++
Sbjct: 310 CVVGPDTTLTDV-AVGDGASVVRTHGSSSSIGD-----GAAVGPFTYLRPGTALGADGKL 363
Query: 323 GAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWS 360
GA V + + I G ++ V +A +G S+IG S
Sbjct: 364 GAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASS 401
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-ELLHYTEKPETFVSDLINCGVY 184
+++A N T+ V+ ++G V + D N + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYG--VVEFDKNGTAISLEEKPLEPKSNYAVTGLY 177
Query: 185 VFTPDI 190
+ D+
Sbjct: 178 FYDNDV 183
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-ELLHYTEKPETFVSDLINCGVY 184
+++A N T+ V+ ++G V + D N + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYG--VVEFDKNGTAISLEEKPLEPKSNYAVTGLY 177
Query: 185 VFTPDI 190
+ D+
Sbjct: 178 FYDNDV 183
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-ELLHYTEKPETFVSDLINCGVY 184
+++A N T+ V+ ++G V + D N + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYG--VVEFDKNGTAISLEEKPLEPKSNYAVTGLY 177
Query: 185 VFTPDI 190
+ D+
Sbjct: 178 FYDNDV 183
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 38/208 (18%)
Query: 21 GTRFRPLSLNIPKPLFPLGGQPMVHHPISAC------KRIYLVG---------FYEEREF 65
GTRF P + +PK + P+ +P++ + + + I++ G F E
Sbjct: 25 GTRFLPATKAMPKEMLPVVDRPLIQYAVDEAVEAGIEQMIFVTGRGKSALEDHFDIAYEL 84
Query: 66 ALYVSSISNELRI---------PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD 116
+++ L + + Y+R+ +P G A++ RD I+ D P + L + D
Sbjct: 85 EATMAARGKSLDVLDGTRLKPGNIAYVRQQEPMGLGHAVWCARD-IVGDEPFAVLLPD-D 142
Query: 117 VCCSFP--LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN-----ELLHYTE 169
P L +M+DA+ GG I +V + ++G + P T E+ E
Sbjct: 143 FMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYG--IITPGTQDGVLTEVKGLVE 199
Query: 170 KPE--TFVSDLINCGVYVFTPDIFNAIQ 195
KP T S+L G Y+ P++ ++
Sbjct: 200 KPAPGTAPSNLSVIGRYILQPEVMRILE 227
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase Complexed
With Ctp
Length = 259
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 107/284 (37%), Gaps = 65/284 (22%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHH-----PISACKRIYLV----GFYE 61
AVI+ GG GTR ++ PKP+ +GG+P++ H + K + G+
Sbjct: 5 AVILAGG--LGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVI 62
Query: 62 EREFALYVSSISN------ELRIPVRYLRED----------KPHGSAGALYNFRDLIMED 105
+ FA Y +S+ E R+ V + R + + G L + + +D
Sbjct: 63 KEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGDSSMTGGRLKRVAEYV-KD 121
Query: 106 NPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165
+ + +F D + +D H+ +G T+ + +FG L D ++
Sbjct: 122 DEAFLFTYG-DGVADLDIKATIDFHKAHGKKATL----TATFPPGRFGAL--DIQAGQVR 174
Query: 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225
+ EKP+ +IN G +V P + + I
Sbjct: 175 SFQEKPKG-DGAMINGGFFVLNPSVIDLID-----------------------------N 204
Query: 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269
D +Q+ L LA + +L +E FW+ + T + GL+
Sbjct: 205 DATTWEQEPLMTLAQQGELMAFEHPGFWQPMDTLRDKVYLEGLW 248
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 81/181 (44%), Gaps = 12/181 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + + L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G+A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGTAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QAGTAVSLEEKPLQPKSNYAVTGLYF 178
Query: 186 F 186
+
Sbjct: 179 Y 179
>pdb|3EH0|A Chain A, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|B Chain B, Crystal Structure Of Lpxd From Escherichia Coli
pdb|3EH0|C Chain C, Crystal Structure Of Lpxd From Escherichia Coli
Length = 341
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV-TNAIVGWKSSI 356
+ PSA I TAK+G NVSI ANA +I GVE+ +N ++ VG S I
Sbjct: 100 IAPSAVIDATAKLGNNVSIGANA-----------VIESGVELGDNVIIGAGCFVGKNSKI 148
Query: 357 GRWSRVQA 364
G SR+ A
Sbjct: 149 GAGSRLWA 156
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYE 61
+V A+I+ G GTR RPL+ N PK L + +P++ + I K I +VG+ +
Sbjct: 25 RVKAIILAAGL--GTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK 82
Query: 62 ER 63
E+
Sbjct: 83 EQ 84
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae
(Licc)
Length = 254
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYE 61
+V A+I+ G GTR RPL+ N PK L + +P++ + I K I +VG+ +
Sbjct: 25 RVKAIILAAGL--GTRLRPLTENTPKALVQVNQKPLIEYQIEFLKEKGINDIIIIVGYLK 82
Query: 62 ER 63
E+
Sbjct: 83 EQ 84
>pdb|2QKX|A Chain A, N-Acetyl Glucosamine 1-Phosphate Uridyltransferase From
Mycobacterium Tuberculosis Complex With N-Acetyl
Glucosamine 1-Phosphate
Length = 391
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 80/367 (21%), Positives = 144/367 (39%), Gaps = 55/367 (14%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC-----KRIYLVGFYEEREFA 66
+++ GP GTR R + PK L L G+ M+ H + A +R+ +V ++ + A
Sbjct: 12 LVLAAGP--GTRMRS---DTPKVLHTLAGRSMLSHVLHAIAKLAPQRLIVVLGHDHQRIA 66
Query: 67 LYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD--VCCSFPLP 124
V +++ L + +D+P G+ A+ + +D ++ + + D + + L
Sbjct: 67 PLVGELADTLGRTIDVALQDRPLGTGHAVLCGLSALPDDYAGNVVVTSGDTPLLDADTLA 126
Query: 125 EMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDL----IN 180
+++ HR T+L + + +G ++ D +E++ E+ + S +N
Sbjct: 127 DLIATHRAVSAAVTVLTTTL--DDPFGYGRILRTQD-HEVMAIVEQTDATPSQREIREVN 183
Query: 181 CGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240
GVY F DI R L R+SS A Q LT D+++ L
Sbjct: 184 AGVYAF--DIAAL----------RSALSRLSSNNAQQEL--YLT--------DVIAILRS 221
Query: 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ---FRLTSPNLLASGDGTKNAT--IIGD 295
Q +D + G++ + LA R+ + + LA AT I D
Sbjct: 222 DGQTVHASHVD--DSALVAGVNNRVQLAELASELNRRVVAAHQLAGVTVVDPATTWIDVD 279
Query: 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSS 355
V + IHP ++ I +G L + DG ++ G SS
Sbjct: 280 VTIGRDTVIHPGTQLLGRTQIGGRCVVGPDTTLTDVAVGDGASVVRTH-------GSSSS 332
Query: 356 IGRWSRV 362
IG + V
Sbjct: 333 IGDGAAV 339
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 80/181 (44%), Gaps = 12/181 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVDPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QKGTAVSLEEKPLQPKSNYAVTGLYF 178
Query: 186 F 186
+
Sbjct: 179 Y 179
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 20/170 (11%)
Query: 22 TRFRPLSLNIPKPLFPLGGQ-PMVHHPISAC-----KRIYLVGFYE--------EREFAL 67
TR PL+ KP PLG ++ P+S C +IY++ + R +A
Sbjct: 32 TRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYAS 91
Query: 68 YVSSISNELRIPVRYLRE-----DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP 122
+ NE + V ++ D G+A A+ + L E +L D
Sbjct: 92 NMGGYKNEGFVEVLAAQQSPENPDWFQGTADAVRQYLWLFEEHTVLEYLILAGDHLYRMD 151
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPE 172
+ + AHR T+ + + + A+ FG + D + ++ + EKP+
Sbjct: 152 YEKFIQAHRETDADITVAALPMDEKRATAFGLMKID-EEGRIIEFAEKPQ 200
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 79/181 (43%), Gaps = 12/181 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + K L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVSPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QKGTAVSLEEKPLQPKSNYAVTGLYF 178
Query: 186 F 186
+
Sbjct: 179 Y 179
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 38/194 (19%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRIYLVGFYE------ERE 64
+++ GG GTR P++ + K L P+ +PM+++P+S + L G + R+
Sbjct: 6 GIVLAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSV---LMLAGIRDILIISTPRD 60
Query: 65 FALYVSSISNELRIPVR--YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP 122
LY + + + VR Y +++P G A A +D I S + L+ D
Sbjct: 61 LPLYRDLLGDGSQFGVRFSYRVQEEPRGIADAFIVGKDFI---GDSKVALVLGD------ 111
Query: 123 LPEMLDAHRNYGGMGTILVIKVSAE-SASQFGELVADP---------DTNELLHYTEKPE 172
+ HR IL S E A FG V DP ++ EKP
Sbjct: 112 --NVFYGHR----FSEILRRAASLEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPS 165
Query: 173 TFVSDLINCGVYVF 186
S+ + G+Y +
Sbjct: 166 RPKSNYVVPGLYFY 179
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 80/181 (44%), Gaps = 12/181 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + + L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QKGTAVSLEEKPLQPKSNYAVTGLYF 178
Query: 186 F 186
+
Sbjct: 179 Y 179
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 80/181 (44%), Gaps = 12/181 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + + L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYV 185
+++A N T+ V+ ++G + D + EKP S+ G+Y
Sbjct: 122 LMEAAVNKESGATVFAYHVN--DPERYGVVEFD-QAGTAVSLEEKPLQPKSNYAVTGLYF 178
Query: 186 F 186
+
Sbjct: 179 Y 179
>pdb|3T57|A Chain A, Activity And Crystal Structure Of Arabidopsis
Udp-N-Acetylglucosamine Acyltransferase
Length = 305
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------SCIILDGVEIMENAVV-T 346
+V +HPSA +HP A IG VS+ IG+ V+L S + E+ E+ V+ T
Sbjct: 7 EVLIHPSAVVHPNAVIGKGVSVGPYCTIGSSVKLGNGCKLYPSSHVFGNTELGESCVLMT 66
Query: 347 NAIVG 351
A+VG
Sbjct: 67 GAVVG 71
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS-----ACKRIYLVGFYEEREF 65
+I+ GG GTR P+++ + + L P+ +PM+++P+S + I ++ ++
Sbjct: 6 GIILAGG--SGTRLYPVTMAVSQQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPR 63
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
+ ++ + ++Y + P G A A + I D+ + +L ++ LP+
Sbjct: 64 FQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGHDDCA--LVLGDNIFYGHDLPK 121
Query: 126 MLDAHRNYGGMGTILVIKVS 145
+++A N T+ V+
Sbjct: 122 LMEAAVNKESGATVFAYHVN 141
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS 49
K +I+ GG GTR P +L I K L P+ +PM+++P+S
Sbjct: 11 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLS 50
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS 49
K +I+ GG GTR P +L I K L P+ +PM+++P+S
Sbjct: 12 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLS 51
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS 49
K +I+ GG GTR P +L I K L P+ +PM+++P+S
Sbjct: 2 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPMIYYPLS 41
>pdb|4E6T|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|B Chain B, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
pdb|4E6T|C Chain C, Structure Of Lpxa From Acinetobacter Baumannii At 1.8a
Resolution (P212121 Form)
Length = 294
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 274 RLTSPNLLASGDGTKNATII-GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCI 332
+T+ NL G GT N +I + PSA I +IGP I IGAG +L S +
Sbjct: 20 HMTTENLYFQGAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHV 79
Query: 333 ILDG 336
++ G
Sbjct: 80 VVGG 83
>pdb|2V0H|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0I|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0J|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-acetylglucosamine-1-
Phosphate Uridyltransferase (glmu)
pdb|2V0K|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2V0L|A Chain A, Characterization Of Substrate Binding And Catalysis Of The
Potential Antibacterial Target N-Acetylglucosamine-1-
Phosphate Uridyltransferase (Glmu)
pdb|2VD4|A Chain A, Structure Of Small-Molecule Inhibitor Of Glmu From
Haemophilus Influenzae Reveals An Allosteric Binding
Site
pdb|2W0V|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 1
pdb|2W0W|A Chain A, Crystal Structure Of Glmu From Haemophilus Influenzae In
Complex With Quinazoline Inhibitor 2
Length = 456
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 79/374 (21%), Positives = 153/374 (40%), Gaps = 53/374 (14%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREF 65
AVI+ G KGTR ++PK L + G+PMV H I + I+L+ +
Sbjct: 8 AVILAAG--KGTRMYS---DLPKVLHTIAGKPMVKHVIDTAHQLGSENIHLIYGHGGD-- 60
Query: 66 ALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPE 125
L + ++NE V ++ + + G+A A+ ++ + + + L +
Sbjct: 61 -LMRTHLANE---QVNWVLQTEQLGTAHAVQQAAPFFKDNENIVVLYGDAPLITKETLEK 116
Query: 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKPETFVSDL----INC 181
+++A G I ++ V+ ++ + +G ++ + ++ E+ + L +N
Sbjct: 117 LIEAKPENG----IALLTVNLDNPTGYGRII--RENGNVVAIVEQKDANAEQLNIKEVNT 170
Query: 182 GVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRL-DQDILSPLAG 240
GV V F ++ L RV + A TD + L +QD
Sbjct: 171 GVMVSDGASF------------KKWLARVGNNNA---QGEYYLTDLIALANQD------- 208
Query: 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNAT---IIGDVY 297
Q+ + D E ++ L+ + L + LL G + + G +
Sbjct: 209 NCQVVAVQATDVME-VEGANNRLQLAALERYFQNKQASKLLLEGVMIYDPARFDLRGTLE 267
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIG 357
+I I NV + +IG G L + +I + VEI +V+ ++IVG K++IG
Sbjct: 268 HGKDVEIDVNVIIEGNVKLGDRVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIG 327
Query: 358 RWSRVQAEGDFNAK 371
+SR++ + A+
Sbjct: 328 PFSRLRPGAELAAE 341
>pdb|3FWW|A Chain A, The Crystal Structure Of The Bifunctional
N-Acetylglucosamine-1- Phosphate
UridyltransferaseGLUCOSAMINE-1-Phosphate
Acetyltransferase From Yersinia Pestis Co92
Length = 456
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI 54
VI+ G KGTR ++PK L PL G+PMV H I A ++
Sbjct: 9 VILAAG--KGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKL 46
>pdb|4FCE|A Chain A, Crystal Structure Of Yersinia Pestis Glmu In Comlex With
Alpha-D- Glucosamine 1-Phosphate (Gp1)
Length = 459
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKRI 54
VI+ G KGTR ++PK L PL G+PMV H I A ++
Sbjct: 12 VILAAG--KGTRMYS---DLPKVLHPLAGKPMVQHVIDAAMKL 49
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS 49
K +I+ GG GTR P +L I K L P+ +P +++P+S
Sbjct: 2 KRKGIILAGG--SGTRLHPATLAISKQLLPVYDKPXIYYPLS 41
>pdb|2AQ9|A Chain A, Structure Of E. Coli Lpxa With A Bound Peptide That Is
Competitive With Acyl-Acp
pdb|2JF3|A Chain A, Nucleotide Substrate Binding By Udp-N-Acetylglucosamine
Acyltransferase
pdb|1LXA|A Chain A, Udp N-Acetylglucosamine Acyltransferase
pdb|2QIA|A Chain A, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
pdb|2QIV|X Chain X, Structural Basis For The Acyl Chain Selectivity And
Mechanism Of Udp-N-Acetylglucosamine Acyltransferase
Length = 262
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 301 SAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV-TNAIVGWKSSIGRW 359
SA +HPTA + SI ANA IG CI+ VEI E V+ ++ +V + IGR
Sbjct: 5 SAFVHPTAIVEEGASIGANAHIGP-----FCIVGPHVEIGEGTVLKSHVVVNGHTKIGRD 59
Query: 360 SRV 362
+ +
Sbjct: 60 NEI 62
>pdb|2JF2|A Chain A, Nucleotide Substrate Binding By Udp-n-acetylglucosamine
Acyltransferase
Length = 264
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 301 SAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV-TNAIVGWKSSIGRW 359
SA +HPTA + SI ANA IG CI+ VEI E V+ ++ +V + IGR
Sbjct: 7 SAFVHPTAIVEEGASIGANAHIGP-----FCIVGPHVEIGEGTVLKSHVVVNGHTKIGRD 61
Query: 360 SRV 362
+ +
Sbjct: 62 NEI 64
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 31/202 (15%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMV------HHPISACKRIYLVGFYEERE 64
A ++ GG +G+R + L+ KP GG+ + + S +RI + Y+
Sbjct: 15 AYVLAGG--RGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYKAHS 72
Query: 65 FALYVSSISNELR---------IPV--RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLL 113
++ + R +P R G+A A+Y D+I P + +L
Sbjct: 73 LIRHLQRGWDFFRPERNESFDILPASQRVSETQWYEGTADAVYQNIDIIEPYAPEYXVIL 132
Query: 114 NCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELLHYTEKP-- 171
D L H + G TI ++V A+ FG + + +E++ + EKP
Sbjct: 133 AGDHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEATGFGVXHVN-EKDEIIDFIEKPAD 191
Query: 172 -------ETFVSDLINCGVYVF 186
E F L + G+YVF
Sbjct: 192 PPGIPGNEGFA--LASXGIYVF 211
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISAC 51
AVI V G GTR P + IPK + PL +P++ + ++ C
Sbjct: 11 AVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNEC 49
>pdb|3F1C|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
pdb|3F1C|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase From Listeria Monocytogenes
Length = 246
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPIS 49
+ A I+ GG KGTR +S+ PK PL G+P++ H +
Sbjct: 4 IYAQILAGG--KGTRMGNVSM--PKQFLPLNGKPIIVHTVE 40
>pdb|4DJ2|A Chain A, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
pdb|4DJ2|B Chain B, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
pdb|4DJ2|C Chain C, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
pdb|4DJ2|D Chain D, Unwinding The Differences Of The Mammalian Period Clock
Proteins From Crystal Structure To Cellular Function
Length = 320
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 25 RPLSLNIPKPLFPLGGQPMVHHPISACKR 53
RPL L I K + L GQP H PI C R
Sbjct: 220 RPLMLAIHKKILQLAGQPFDHSPIRFCAR 248
>pdb|4E6U|A Chain A, Structure Of Lpxa From Acinetobacter Baumannii At 1.4a
Resolution (P63 Form)
Length = 265
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 284 GDGTKNATII-GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDG 336
G GT N +I + PSA I +IGP I IGAG +L S +++ G
Sbjct: 1 GAGTSNHDLIHSTAIIDPSAVIASDVQIGPYCIIGPQVTIGAGTKLHSHVVVGG 54
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
Query: 298 VHPSA------KIHPTAKIGPNVSISANARIGAGVRLIS-CII 333
+HP+A ++ P+A +G I + ARIGAGV + + C+I
Sbjct: 122 IHPTAIVAADAEVDPSASVGAYAVIESGARIGAGVSIGAHCVI 164
>pdb|4EQY|A Chain A, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|B Chain B, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|C Chain C, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|E Chain E, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|F Chain F, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
pdb|4EQY|G Chain G, Crystal Structure Of Acyl-[acyl-Carrier-Protein]--Udp-N-
Acetylglucosamine O-Acyltransferase From Burkholderia
Thailandensis
Length = 283
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDG 336
+ P A++H T ++GP + +N IGA + S +++G
Sbjct: 31 IEPGAQLHETVEVGPYAIVGSNVTIGARTTIGSHSVIEG 69
>pdb|3KWD|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 1
pdb|3KWE|A Chain A, Inactive Truncation Of The Beta-Carboxysomal
Gamma-Carbonic Anhydrase, Ccmm, Form 2
Length = 213
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 285 DGTKNATIIGD-VYVHPSAKIHPTAKIGPNVSISA-----NARIGAGVRLISCIILDGVE 338
DG + + IGD V + A IH A IG I NAR+GAG ++ +++ VE
Sbjct: 106 DGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLIQDVE 165
Query: 339 IMENAVVTNAIV 350
I V + +V
Sbjct: 166 IPPGKYVPSGMV 177
>pdb|3KWC|A Chain A, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|B Chain B, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|C Chain C, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|D Chain D, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|E Chain E, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
pdb|3KWC|F Chain F, Oxidized, Active Structure Of The Beta-carboxysomal
Gamma-carbonic Anhydrase, Ccmm
Length = 229
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 285 DGTKNATIIGD-VYVHPSAKIHPTAKIGPNVSISA-----NARIGAGVRLISCIILDGVE 338
DG + + IGD V + A IH A IG I NAR+GAG ++ +++ VE
Sbjct: 106 DGQEYSVWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLIQDVE 165
Query: 339 IMENAVVTNAIV 350
I V + +V
Sbjct: 166 IPPGKYVPSGMV 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,827,625
Number of Sequences: 62578
Number of extensions: 490029
Number of successful extensions: 1121
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 73
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)