Query 015259
Match_columns 410
No_of_seqs 205 out of 2526
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:36:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1460 GDP-mannose pyrophosph 100.0 1.3E-62 2.8E-67 428.1 28.2 395 8-410 2-407 (407)
2 KOG1322 GDP-mannose pyrophosph 100.0 5.9E-56 1.3E-60 393.0 25.6 344 7-397 8-357 (371)
3 COG1208 GCD1 Nucleoside-diphos 100.0 4.1E-53 8.8E-58 402.9 35.2 341 8-401 1-352 (358)
4 COG0448 GlgC ADP-glucose pyrop 100.0 8.6E-51 1.9E-55 374.0 29.6 337 5-389 2-360 (393)
5 PRK05293 glgC glucose-1-phosph 100.0 7.2E-50 1.6E-54 388.1 32.5 350 6-403 1-376 (380)
6 PRK00844 glgC glucose-1-phosph 100.0 4.4E-49 9.6E-54 384.5 34.3 332 5-364 2-382 (407)
7 TIGR01208 rmlA_long glucose-1- 100.0 2.2E-47 4.8E-52 366.9 34.1 340 10-401 1-352 (353)
8 PLN02241 glucose-1-phosphate a 100.0 1.9E-47 4.1E-52 375.7 33.5 357 6-398 1-434 (436)
9 PRK02862 glgC glucose-1-phosph 100.0 1.8E-47 4E-52 374.7 32.0 327 6-365 1-395 (429)
10 TIGR02092 glgD glucose-1-phosp 100.0 2.3E-47 4.9E-52 369.0 30.2 340 8-397 2-361 (369)
11 PRK00725 glgC glucose-1-phosph 100.0 1.8E-46 3.8E-51 367.3 34.6 333 5-365 12-395 (425)
12 TIGR02091 glgC glucose-1-phosp 100.0 1.7E-45 3.6E-50 355.2 32.2 335 11-390 1-360 (361)
13 COG1207 GlmU N-acetylglucosami 100.0 2.2E-45 4.8E-50 337.6 25.9 346 8-401 2-365 (460)
14 PRK14355 glmU bifunctional N-a 100.0 1.9E-43 4.2E-48 350.9 31.7 340 6-395 1-359 (459)
15 KOG1461 Translation initiation 100.0 1.8E-43 4E-48 337.3 28.9 354 7-406 23-417 (673)
16 PRK14358 glmU bifunctional N-a 100.0 4.6E-42 9.9E-47 341.3 31.6 339 1-389 1-355 (481)
17 PRK14352 glmU bifunctional N-a 100.0 9.6E-42 2.1E-46 340.4 33.8 318 8-365 4-340 (482)
18 PRK14356 glmU bifunctional N-a 100.0 6.4E-42 1.4E-46 340.4 31.4 346 5-400 2-365 (456)
19 KOG1462 Translation initiation 100.0 4.8E-42 1E-46 310.3 20.6 359 3-402 5-413 (433)
20 TIGR01173 glmU UDP-N-acetylglu 100.0 1.3E-40 2.8E-45 330.9 31.0 337 9-397 1-354 (451)
21 PRK14353 glmU bifunctional N-a 100.0 1.1E-39 2.4E-44 323.5 34.0 364 7-409 4-422 (446)
22 PRK14359 glmU bifunctional N-a 100.0 1.1E-39 2.4E-44 322.3 33.4 356 8-409 2-409 (430)
23 PRK09451 glmU bifunctional N-a 100.0 1.1E-39 2.3E-44 324.0 28.7 323 8-389 5-350 (456)
24 COG1209 RfbA dTDP-glucose pyro 100.0 2.2E-40 4.8E-45 289.0 19.8 230 9-271 1-237 (286)
25 PRK14354 glmU bifunctional N-a 100.0 9.2E-39 2E-43 318.1 31.2 340 8-400 2-360 (458)
26 PRK14357 glmU bifunctional N-a 100.0 1.4E-38 3E-43 315.8 30.7 323 9-390 1-340 (448)
27 PRK14360 glmU bifunctional N-a 100.0 5.6E-37 1.2E-41 304.6 31.5 339 9-401 2-358 (450)
28 TIGR01105 galF UTP-glucose-1-p 100.0 4.3E-37 9.2E-42 285.3 21.4 234 6-270 1-277 (297)
29 cd06428 M1P_guanylylT_A_like_N 100.0 3.6E-36 7.8E-41 276.5 21.9 247 11-268 1-256 (257)
30 PRK15480 glucose-1-phosphate t 100.0 6.9E-36 1.5E-40 276.5 22.3 232 6-270 1-241 (292)
31 cd06425 M1P_guanylylT_B_like_N 100.0 5.3E-36 1.1E-40 271.5 21.1 228 9-270 1-233 (233)
32 PRK10122 GalU regulator GalF; 100.0 2.8E-35 6E-40 274.0 22.2 234 6-270 1-277 (297)
33 PF00483 NTP_transferase: Nucl 100.0 2.2E-35 4.7E-40 270.3 18.8 233 10-271 1-247 (248)
34 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.5E-34 3.2E-39 263.2 21.0 228 9-269 1-237 (240)
35 TIGR01207 rmlA glucose-1-phosp 100.0 1.7E-34 3.8E-39 266.9 20.7 229 10-271 1-238 (286)
36 TIGR02623 G1P_cyt_trans glucos 100.0 5.6E-33 1.2E-37 254.2 20.5 221 10-271 1-246 (254)
37 cd04189 G1P_TT_long G1P_TT_lon 100.0 1.4E-32 3.1E-37 249.7 21.8 229 9-271 1-235 (236)
38 PRK13389 UTP--glucose-1-phosph 100.0 1.6E-32 3.5E-37 255.8 21.7 231 7-270 7-280 (302)
39 cd06422 NTP_transferase_like_1 100.0 1.7E-32 3.7E-37 246.6 19.2 213 10-265 1-221 (221)
40 cd02541 UGPase_prokaryotic Pro 100.0 1.9E-32 4.2E-37 253.3 19.7 232 9-270 1-265 (267)
41 TIGR01099 galU UTP-glucose-1-p 100.0 3E-32 6.5E-37 251.1 19.5 227 9-265 1-260 (260)
42 cd06915 NTP_transferase_WcbM_l 100.0 3.7E-31 8E-36 238.2 20.2 218 11-266 1-223 (223)
43 cd06426 NTP_transferase_like_2 100.0 3.9E-31 8.4E-36 237.7 19.9 214 11-266 1-220 (220)
44 cd02524 G1P_cytidylyltransfera 100.0 8.1E-31 1.8E-35 240.3 20.2 221 11-270 1-246 (253)
45 cd04181 NTP_transferase NTP_tr 100.0 2.4E-30 5.1E-35 232.0 20.2 212 11-257 1-217 (217)
46 COG1210 GalU UDP-glucose pyrop 100.0 3.8E-30 8.3E-35 225.0 18.6 238 5-272 1-272 (291)
47 cd04197 eIF-2B_epsilon_N The N 100.0 8.9E-28 1.9E-32 215.0 16.2 176 9-191 1-217 (217)
48 cd02523 PC_cytidylyltransferas 99.9 3.3E-27 7.1E-32 213.4 16.0 221 11-266 1-229 (229)
49 cd04183 GT2_BcE_like GT2_BcbE_ 99.9 4.5E-26 9.7E-31 206.3 19.6 218 11-262 1-230 (231)
50 cd02508 ADP_Glucose_PP ADP-glu 99.9 2.5E-26 5.4E-31 203.1 15.1 182 11-256 1-200 (200)
51 cd04198 eIF-2B_gamma_N The N-t 99.9 5E-25 1.1E-29 196.7 14.9 177 9-191 1-214 (214)
52 cd02507 eIF-2B_gamma_N_like Th 99.9 9.1E-25 2E-29 195.2 15.2 177 9-191 1-216 (216)
53 cd02509 GDP-M1P_Guanylyltransf 99.9 1.9E-23 4.1E-28 193.0 17.8 181 9-198 1-210 (274)
54 cd02540 GT2_GlmU_N_bac N-termi 99.9 3.2E-23 6.9E-28 187.4 18.4 214 11-262 1-229 (229)
55 COG1213 Predicted sugar nucleo 99.9 1.1E-22 2.3E-27 175.4 13.6 224 6-273 1-232 (239)
56 PRK05450 3-deoxy-manno-octulos 99.9 6.7E-22 1.4E-26 180.6 19.0 221 8-269 2-244 (245)
57 cd02517 CMP-KDO-Synthetase CMP 99.9 2.5E-21 5.3E-26 176.2 18.1 213 9-267 2-238 (239)
58 TIGR01479 GMP_PMI mannose-1-ph 99.9 2.4E-21 5.2E-26 191.4 18.9 241 9-266 1-281 (468)
59 PRK13368 3-deoxy-manno-octulos 99.8 1E-19 2.2E-24 165.4 18.0 214 8-267 2-236 (238)
60 PLN02917 CMP-KDO synthetase 99.8 2.2E-17 4.8E-22 153.3 19.6 223 8-271 47-289 (293)
61 COG4750 LicC CTP:phosphocholin 99.8 1.5E-18 3.3E-23 143.3 9.8 219 9-269 1-225 (231)
62 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.8 3.3E-18 7.1E-23 152.8 12.4 158 227-401 27-204 (231)
63 PRK15460 cpsB mannose-1-phosph 99.7 6.6E-17 1.4E-21 158.4 17.0 242 8-266 5-290 (478)
64 COG0836 {ManC} Mannose-1-phosp 99.7 1.2E-15 2.6E-20 137.4 16.0 250 9-266 2-282 (333)
65 cd05636 LbH_G1P_TT_C_like Puta 99.7 2.9E-15 6.3E-20 127.7 14.9 115 288-403 28-159 (163)
66 cd04745 LbH_paaY_like paaY-lik 99.6 2.3E-14 4.9E-19 121.0 14.3 106 289-403 12-126 (155)
67 COG0663 PaaY Carbonic anhydras 99.6 1.5E-14 3.3E-19 120.1 12.6 109 288-405 22-138 (176)
68 cd05636 LbH_G1P_TT_C_like Puta 99.6 3.1E-14 6.6E-19 121.4 14.6 92 288-389 10-102 (163)
69 cd03353 LbH_GlmU_C N-acetyl-gl 99.6 3.9E-14 8.6E-19 124.3 14.4 104 288-400 8-111 (193)
70 cd04646 LbH_Dynactin_6 Dynacti 99.6 5.9E-14 1.3E-18 119.3 14.5 106 289-403 11-131 (164)
71 TIGR02287 PaaY phenylacetic ac 99.6 3.3E-14 7.2E-19 123.3 13.0 107 288-403 19-134 (192)
72 PLN02296 carbonate dehydratase 99.6 4.7E-14 1E-18 128.3 14.0 107 288-403 63-184 (269)
73 cd03350 LbH_THP_succinylT 2,3, 99.6 1.2E-13 2.6E-18 114.3 14.4 110 289-407 7-130 (139)
74 KOG1461 Translation initiation 99.6 1E-14 2.2E-19 141.0 9.0 96 289-394 327-423 (673)
75 TIGR00466 kdsB 3-deoxy-D-manno 99.6 3.2E-13 6.9E-18 122.2 18.3 212 11-262 2-237 (238)
76 PLN02472 uncharacterized prote 99.6 7.5E-14 1.6E-18 125.2 13.9 107 288-403 70-191 (246)
77 TIGR03308 phn_thr-fam phosphon 99.5 9.1E-14 2E-18 122.1 13.4 112 296-409 3-150 (204)
78 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 1.3E-13 2.8E-18 125.6 14.1 97 293-389 109-217 (338)
79 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 8.6E-14 1.9E-18 127.3 13.0 118 291-408 25-179 (254)
80 PRK13627 carnitine operon prot 99.5 1.2E-13 2.6E-18 120.2 12.9 106 288-402 21-135 (196)
81 TIGR01852 lipid_A_lpxA acyl-[a 99.5 1.2E-13 2.5E-18 126.4 13.4 112 289-409 40-179 (254)
82 PRK13627 carnitine operon prot 99.5 1.7E-13 3.6E-18 119.3 13.5 98 297-404 12-125 (196)
83 PRK05289 UDP-N-acetylglucosami 99.5 6.9E-14 1.5E-18 128.1 11.5 119 291-409 28-183 (262)
84 cd04650 LbH_FBP Ferripyochelin 99.5 3.1E-13 6.8E-18 113.7 14.5 105 289-402 12-125 (154)
85 cd04745 LbH_paaY_like paaY-lik 99.5 1.8E-13 3.9E-18 115.5 12.4 100 298-407 3-120 (155)
86 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 1.9E-13 4.2E-18 124.5 13.3 107 289-400 123-251 (338)
87 cd05824 LbH_M1P_guanylylT_C Ma 99.5 1.9E-13 4.1E-18 101.8 11.0 79 298-385 2-80 (80)
88 PRK12461 UDP-N-acetylglucosami 99.5 1.8E-13 4E-18 124.2 13.1 35 375-409 138-179 (255)
89 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 2.3E-13 4.9E-18 124.5 13.8 111 289-401 5-130 (254)
90 PRK09382 ispDF bifunctional 2- 99.5 3.7E-13 8E-18 128.8 15.6 201 7-270 4-213 (378)
91 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 1.7E-13 3.7E-18 102.3 10.4 79 298-387 2-80 (81)
92 cd04646 LbH_Dynactin_6 Dynacti 99.5 2.9E-13 6.3E-18 115.0 12.7 100 298-407 2-125 (164)
93 cd02513 CMP-NeuAc_Synthase CMP 99.5 6.4E-13 1.4E-17 119.4 15.6 201 8-267 1-221 (223)
94 cd03356 LbH_G1P_AT_C_like Left 99.5 2.4E-13 5.2E-18 101.0 10.4 79 297-385 1-79 (79)
95 TIGR02287 PaaY phenylacetic ac 99.5 1.9E-13 4.1E-18 118.6 11.3 96 297-402 10-121 (192)
96 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 4.9E-13 1.1E-17 117.3 13.9 120 289-409 27-186 (193)
97 TIGR01852 lipid_A_lpxA acyl-[a 99.5 5.2E-13 1.1E-17 122.1 14.3 103 290-401 23-147 (254)
98 PRK11830 dapD 2,3,4,5-tetrahyd 99.5 3.2E-13 6.8E-18 122.2 12.6 112 288-408 102-232 (272)
99 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 6.3E-13 1.4E-17 125.1 15.2 102 288-389 96-210 (324)
100 PF12804 NTP_transf_3: MobA-li 99.5 1.7E-13 3.6E-18 116.6 10.3 115 11-142 1-123 (160)
101 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.5 2.8E-13 6E-18 121.2 11.7 112 297-409 82-202 (231)
102 cd00710 LbH_gamma_CA Gamma car 99.5 9.1E-13 2E-17 112.6 14.3 104 289-402 14-127 (167)
103 cd04645 LbH_gamma_CA_like Gamm 99.5 1.1E-12 2.4E-17 110.5 14.5 105 289-402 11-124 (153)
104 TIGR00454 conserved hypothetic 99.5 2E-13 4.3E-18 118.1 10.1 119 9-142 1-126 (183)
105 TIGR00965 dapD 2,3,4,5-tetrahy 99.5 5.6E-13 1.2E-17 119.3 12.9 92 289-389 100-206 (269)
106 PRK00155 ispD 2-C-methyl-D-ery 99.5 7.3E-13 1.6E-17 119.4 13.9 211 8-270 3-223 (227)
107 PLN02296 carbonate dehydratase 99.5 5.1E-13 1.1E-17 121.5 12.8 102 297-408 54-179 (269)
108 cd04652 LbH_eIF2B_gamma_C eIF- 99.5 5.2E-13 1.1E-17 99.6 10.6 79 316-404 2-80 (81)
109 cd02516 CDP-ME_synthetase CDP- 99.5 6.4E-13 1.4E-17 119.0 13.1 207 10-264 2-217 (218)
110 PRK05289 UDP-N-acetylglucosami 99.5 8.8E-13 1.9E-17 120.8 14.1 112 289-402 8-134 (262)
111 TIGR00453 ispD 2-C-methyl-D-er 99.5 6E-13 1.3E-17 119.1 12.2 205 10-267 1-215 (217)
112 cd03359 LbH_Dynactin_5 Dynacti 99.5 1.7E-12 3.7E-17 110.2 13.8 100 295-403 21-137 (161)
113 TIGR01853 lipid_A_lpxD UDP-3-O 99.4 1.1E-12 2.4E-17 123.5 13.3 35 375-409 254-295 (324)
114 TIGR03310 matur_ygfJ molybdenu 99.4 1.1E-12 2.3E-17 114.7 12.2 112 11-136 2-121 (188)
115 cd04650 LbH_FBP Ferripyochelin 99.4 1.8E-12 3.9E-17 109.1 12.7 95 298-402 3-107 (154)
116 TIGR01173 glmU UDP-N-acetylglu 99.4 9.1E-13 2E-17 131.3 12.4 120 289-410 273-433 (451)
117 cd00710 LbH_gamma_CA Gamma car 99.4 2.7E-12 5.9E-17 109.7 13.5 97 297-402 4-110 (167)
118 cd03352 LbH_LpxD UDP-3-O-acyl- 99.4 2.8E-12 6E-17 113.7 14.1 35 375-409 151-192 (205)
119 COG0663 PaaY Carbonic anhydras 99.4 1.4E-12 3.1E-17 108.4 11.2 96 297-402 13-124 (176)
120 cd05787 LbH_eIF2B_epsilon eIF- 99.4 1.5E-12 3.3E-17 96.7 10.1 77 298-384 2-78 (79)
121 cd03360 LbH_AT_putative Putati 99.4 5E-12 1.1E-16 110.9 15.2 103 289-401 90-194 (197)
122 cd03358 LbH_WxcM_N_like WcxM-l 99.4 2.3E-12 4.9E-17 103.9 11.8 99 294-403 15-113 (119)
123 TIGR03570 NeuD_NnaD sugar O-ac 99.4 3.5E-12 7.6E-17 112.6 14.1 104 289-402 93-198 (201)
124 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 1.9E-12 4E-17 123.7 13.1 54 292-345 127-181 (343)
125 cd03350 LbH_THP_succinylT 2,3, 99.4 3.9E-12 8.5E-17 105.3 13.3 61 291-351 3-65 (139)
126 COG1207 GlmU N-acetylglucosami 99.4 1E-12 2.2E-17 122.5 10.5 112 296-409 321-439 (460)
127 PRK12461 UDP-N-acetylglucosami 99.4 5.3E-12 1.1E-16 114.7 14.2 76 289-364 5-94 (255)
128 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 3.4E-12 7.3E-17 121.9 13.5 101 289-389 106-218 (343)
129 PRK00317 mobA molybdopterin-gu 99.4 5.2E-12 1.1E-16 110.9 13.3 106 7-131 2-115 (193)
130 KOG1462 Translation initiation 99.4 1.1E-12 2.5E-17 120.1 9.0 95 292-397 331-425 (433)
131 TIGR00965 dapD 2,3,4,5-tetrahy 99.4 6.6E-12 1.4E-16 112.5 13.6 7 394-400 225-231 (269)
132 PLN02472 uncharacterized prote 99.4 4.9E-12 1.1E-16 113.6 12.8 96 297-402 61-178 (246)
133 cd04645 LbH_gamma_CA_like Gamm 99.4 5.4E-12 1.2E-16 106.4 12.1 95 298-402 2-112 (153)
134 cd05787 LbH_eIF2B_epsilon eIF- 99.4 4E-12 8.6E-17 94.4 9.9 77 315-401 1-78 (79)
135 cd05635 LbH_unknown Uncharacte 99.4 7.7E-12 1.7E-16 97.0 11.8 87 293-391 9-96 (101)
136 TIGR03570 NeuD_NnaD sugar O-ac 99.4 1.4E-11 3E-16 108.8 15.0 106 290-409 88-195 (201)
137 cd03356 LbH_G1P_AT_C_like Left 99.4 5.1E-12 1.1E-16 93.8 10.1 77 315-401 1-78 (79)
138 COG0746 MobA Molybdopterin-gua 99.4 1.1E-11 2.4E-16 107.5 13.3 105 6-131 2-113 (192)
139 cd04651 LbH_G1P_AT_C Glucose-1 99.4 6.3E-12 1.4E-16 98.4 10.7 78 303-392 3-80 (104)
140 PRK14355 glmU bifunctional N-a 99.4 5.7E-12 1.2E-16 125.6 13.2 120 289-409 280-439 (459)
141 TIGR03308 phn_thr-fam phosphon 99.4 1.2E-11 2.6E-16 108.7 13.5 103 289-403 14-154 (204)
142 PRK14360 glmU bifunctional N-a 99.3 4.2E-12 9.1E-17 126.4 10.9 112 296-409 314-432 (450)
143 PRK13385 2-C-methyl-D-erythrit 99.3 1.8E-11 4E-16 110.5 14.0 210 8-270 2-224 (230)
144 cd03360 LbH_AT_putative Putati 99.3 2E-11 4.3E-16 107.1 13.6 106 290-409 85-192 (197)
145 PLN02728 2-C-methyl-D-erythrit 99.3 2E-11 4.2E-16 110.9 13.5 127 2-144 17-155 (252)
146 PRK00560 molybdopterin-guanine 99.3 2.3E-11 4.9E-16 106.9 13.5 103 1-126 1-112 (196)
147 cd04182 GT_2_like_f GT_2_like_ 99.3 9.4E-12 2E-16 108.4 10.7 112 9-134 1-120 (186)
148 PRK09451 glmU bifunctional N-a 99.3 1.2E-11 2.7E-16 123.2 12.8 117 290-409 278-436 (456)
149 COG1212 KdsB CMP-2-keto-3-deox 99.3 9E-11 2E-15 100.5 15.9 225 8-271 3-244 (247)
150 COG1043 LpxA Acyl-[acyl carrie 99.3 1.4E-11 3.1E-16 106.2 10.9 76 291-366 5-100 (260)
151 COG2266 GTP:adenosylcobinamide 99.3 2.2E-11 4.8E-16 100.6 11.1 105 9-131 1-112 (177)
152 TIGR03584 PseF pseudaminic aci 99.3 1.3E-10 2.8E-15 104.0 16.3 199 11-268 2-219 (222)
153 PRK14352 glmU bifunctional N-a 99.3 2.8E-11 6.2E-16 121.3 12.8 112 296-409 323-441 (482)
154 PRK14354 glmU bifunctional N-a 99.3 2.6E-11 5.7E-16 120.9 12.2 113 295-409 316-435 (458)
155 PRK02726 molybdopterin-guanine 99.3 3.3E-11 7.2E-16 106.2 10.3 111 1-131 2-119 (200)
156 PRK14357 glmU bifunctional N-a 99.3 2.4E-11 5.2E-16 120.9 10.4 94 314-409 325-425 (448)
157 cd02503 MobA MobA catalyzes th 99.3 2.6E-11 5.6E-16 105.3 9.3 102 9-130 1-109 (181)
158 cd04649 LbH_THP_succinylT_puta 99.2 1.8E-10 3.9E-15 93.4 13.2 87 292-389 4-104 (147)
159 PRK10502 putative acyl transfe 99.2 7.1E-11 1.5E-15 102.2 11.5 96 296-401 52-168 (182)
160 TIGR03202 pucB xanthine dehydr 99.2 4.8E-11 1E-15 104.5 10.4 113 10-131 2-122 (190)
161 PRK14358 glmU bifunctional N-a 99.2 4.9E-11 1.1E-15 119.2 11.7 114 289-403 282-411 (481)
162 cd04649 LbH_THP_succinylT_puta 99.2 1.3E-10 2.8E-15 94.2 11.9 29 375-403 74-107 (147)
163 PRK05293 glgC glucose-1-phosph 99.2 4.8E-11 1E-15 116.1 11.3 95 289-389 282-379 (380)
164 cd03352 LbH_LpxD UDP-3-O-acyl- 99.2 1.9E-10 4.1E-15 102.0 14.0 56 290-345 14-70 (205)
165 PRK14356 glmU bifunctional N-a 99.2 7.2E-11 1.6E-15 117.8 12.5 35 375-409 399-440 (456)
166 PLN02694 serine O-acetyltransf 99.2 5.2E-11 1.1E-15 107.8 10.1 93 295-400 160-255 (294)
167 cd05824 LbH_M1P_guanylylT_C Ma 99.2 1.6E-10 3.5E-15 85.9 10.9 75 317-401 3-79 (80)
168 PRK09677 putative lipopolysacc 99.2 2E-10 4.3E-15 100.3 13.1 98 295-402 43-175 (192)
169 TIGR02665 molyb_mobA molybdopt 99.2 1.2E-10 2.6E-15 101.5 11.7 106 9-131 1-114 (186)
170 PRK11132 cysE serine acetyltra 99.2 9.1E-11 2E-15 106.3 11.0 95 293-402 139-238 (273)
171 PRK11830 dapD 2,3,4,5-tetrahyd 99.2 2.1E-10 4.6E-15 103.9 13.0 15 375-389 177-191 (272)
172 COG1043 LpxA Acyl-[acyl carrie 99.2 5.5E-11 1.2E-15 102.6 8.6 90 295-389 3-96 (260)
173 cd04651 LbH_G1P_AT_C Glucose-1 99.2 1.5E-10 3.1E-15 90.7 10.3 74 289-365 7-80 (104)
174 PRK09527 lacA galactoside O-ac 99.2 2.3E-10 5E-15 99.9 12.4 81 312-402 74-176 (203)
175 cd04647 LbH_MAT_like Maltose O 99.2 3.2E-10 7E-15 89.7 11.3 98 296-403 2-104 (109)
176 PRK14353 glmU bifunctional N-a 99.2 2.6E-10 5.7E-15 113.4 13.3 115 290-404 263-399 (446)
177 cd03354 LbH_SAT Serine acetylt 99.2 4E-10 8.6E-15 87.8 11.2 91 296-401 3-98 (101)
178 cd03359 LbH_Dynactin_5 Dynacti 99.2 5.3E-10 1.1E-14 94.9 12.5 86 313-403 21-125 (161)
179 cd03358 LbH_WxcM_N_like WcxM-l 99.1 2.1E-10 4.7E-15 92.2 9.1 101 298-409 1-109 (119)
180 cd03357 LbH_MAT_GAT Maltose O- 99.1 6.9E-10 1.5E-14 95.0 12.1 47 347-403 118-164 (169)
181 COG1211 IspD 4-diphosphocytidy 99.1 1.5E-09 3.3E-14 95.6 14.3 126 7-144 3-137 (230)
182 PF01128 IspD: 2-C-methyl-D-er 99.1 6.1E-09 1.3E-13 92.3 17.8 206 9-269 1-219 (221)
183 TIGR01172 cysE serine O-acetyl 99.1 6.9E-10 1.5E-14 94.1 10.7 93 295-402 61-158 (162)
184 PRK10092 maltose O-acetyltrans 99.1 1.1E-09 2.5E-14 94.3 12.0 46 347-402 129-174 (183)
185 cd05635 LbH_unknown Uncharacte 99.1 9.2E-10 2E-14 85.4 10.1 74 289-364 23-96 (101)
186 PRK10502 putative acyl transfe 99.1 8.1E-10 1.8E-14 95.6 10.7 95 315-409 53-166 (182)
187 PRK10191 putative acyl transfe 99.1 8.4E-10 1.8E-14 91.1 10.0 93 289-400 41-135 (146)
188 TIGR03536 DapD_gpp 2,3,4,5-tet 99.1 1.5E-09 3.2E-14 98.3 12.3 91 288-389 177-281 (341)
189 PLN02357 serine acetyltransfer 99.1 9.7E-10 2.1E-14 102.4 11.2 83 296-390 227-312 (360)
190 COG2171 DapD Tetrahydrodipicol 99.1 8.6E-10 1.9E-14 97.3 9.5 92 289-389 114-215 (271)
191 PRK14490 putative bifunctional 99.1 3E-09 6.6E-14 102.6 14.2 102 8-128 174-282 (369)
192 PRK14500 putative bifunctional 99.0 2.4E-09 5.2E-14 101.4 13.0 104 8-130 160-270 (346)
193 cd00208 LbetaH Left-handed par 99.0 1.4E-09 3E-14 80.3 9.1 76 297-389 2-77 (78)
194 COG2171 DapD Tetrahydrodipicol 99.0 9.5E-10 2.1E-14 97.0 9.3 105 302-407 109-222 (271)
195 PRK14489 putative bifunctional 99.0 1.3E-09 2.8E-14 104.9 11.1 115 7-136 4-124 (366)
196 PLN02739 serine acetyltransfer 99.0 1.2E-09 2.6E-14 101.0 10.1 94 289-401 205-301 (355)
197 COG0448 GlgC ADP-glucose pyrop 99.0 1.7E-09 3.7E-14 101.1 10.9 68 295-365 296-363 (393)
198 PRK02862 glgC glucose-1-phosph 99.0 2E-09 4.4E-14 106.1 11.9 84 293-389 290-392 (429)
199 TIGR03535 DapD_actino 2,3,4,5- 99.0 3.6E-09 7.7E-14 95.4 12.0 87 289-389 159-256 (319)
200 PRK10191 putative acyl transfe 99.0 3E-09 6.4E-14 87.9 10.5 77 288-364 46-127 (146)
201 PRK14359 glmU bifunctional N-a 99.0 2.3E-09 5E-14 106.1 11.3 86 303-389 255-357 (430)
202 PRK11132 cysE serine acetyltra 99.0 2.3E-09 5.1E-14 97.2 10.1 76 288-363 140-227 (273)
203 TIGR03536 DapD_gpp 2,3,4,5-tet 99.0 3.6E-09 7.9E-14 95.8 11.1 104 290-405 173-286 (341)
204 TIGR01172 cysE serine O-acetyl 99.0 5.6E-09 1.2E-13 88.5 11.1 76 289-364 61-148 (162)
205 COG2068 Uncharacterized MobA-r 99.0 4E-09 8.6E-14 89.9 10.1 112 8-133 5-125 (199)
206 cd05825 LbH_wcaF_like wcaF-lik 99.0 9.9E-09 2.1E-13 80.8 11.6 95 296-402 4-101 (107)
207 PRK09677 putative lipopolysacc 99.0 7.9E-09 1.7E-13 90.2 12.1 80 330-409 65-172 (192)
208 PRK09527 lacA galactoside O-ac 98.9 6.4E-09 1.4E-13 90.8 10.6 61 348-409 96-173 (203)
209 PRK00844 glgC glucose-1-phosph 98.9 4.9E-09 1.1E-13 102.8 11.0 71 310-391 312-382 (407)
210 COG1045 CysE Serine acetyltran 98.9 2.3E-09 5E-14 90.4 6.9 83 289-389 67-152 (194)
211 COG1208 GCD1 Nucleoside-diphos 98.9 8E-09 1.7E-13 99.0 11.3 89 304-403 253-348 (358)
212 PRK00725 glgC glucose-1-phosph 98.9 4.2E-09 9.1E-14 103.7 9.1 67 313-390 327-393 (425)
213 PLN02241 glucose-1-phosphate a 98.9 1.1E-08 2.4E-13 101.1 11.9 77 300-389 304-399 (436)
214 TIGR03535 DapD_actino 2,3,4,5- 98.9 1.3E-08 2.8E-13 91.9 10.8 101 294-406 152-262 (319)
215 PLN02357 serine acetyltransfer 98.9 1.4E-08 3E-13 94.8 11.0 76 289-364 226-313 (360)
216 KOG3121 Dynactin, subunit p25 98.9 4.1E-09 8.9E-14 83.1 6.2 101 296-405 34-151 (184)
217 PLN02694 serine O-acetyltransf 98.9 9.6E-09 2.1E-13 93.2 8.7 76 289-364 160-247 (294)
218 TIGR01208 rmlA_long glucose-1- 98.8 1.9E-08 4E-13 96.9 11.0 91 293-395 246-338 (353)
219 cd03354 LbH_SAT Serine acetylt 98.8 3.7E-08 8.1E-13 76.7 10.6 32 332-363 56-88 (101)
220 TIGR02091 glgC glucose-1-phosp 98.8 1.6E-08 3.5E-13 97.7 10.4 67 296-364 295-361 (361)
221 cd05825 LbH_wcaF_like wcaF-lik 98.8 3.5E-08 7.5E-13 77.7 10.3 88 313-409 3-98 (107)
222 PLN02739 serine acetyltransfer 98.8 3.8E-08 8.3E-13 91.1 10.9 77 288-364 210-292 (355)
223 cd04180 UGPase_euk_like Eukary 98.8 2.5E-09 5.5E-14 97.9 2.4 151 10-172 2-175 (266)
224 TIGR02092 glgD glucose-1-phosp 98.8 3.3E-08 7.1E-13 95.9 10.1 75 318-404 277-351 (369)
225 cd03357 LbH_MAT_GAT Maltose O- 98.8 6.3E-08 1.4E-12 82.9 10.6 88 313-409 62-160 (169)
226 cd00208 LbetaH Left-handed par 98.8 7.3E-08 1.6E-12 70.9 9.5 35 315-349 2-37 (78)
227 PRK10092 maltose O-acetyltrans 98.8 7.9E-08 1.7E-12 82.9 10.8 93 305-409 71-171 (183)
228 cd04647 LbH_MAT_like Maltose O 98.8 7.1E-08 1.5E-12 76.1 9.7 16 331-346 22-37 (109)
229 cd04193 UDPGlcNAc_PPase UDPGlc 98.7 3.1E-07 6.7E-12 86.4 14.9 158 7-172 14-222 (323)
230 cd02518 GT2_SpsF SpsF is a gly 98.7 7.8E-08 1.7E-12 87.0 10.2 110 11-138 2-121 (233)
231 KOG1460 GDP-mannose pyrophosph 98.7 4.1E-08 8.9E-13 87.4 7.5 70 307-391 288-357 (407)
232 cd03349 LbH_XAT Xenobiotic acy 98.7 1.5E-07 3.3E-12 78.0 10.0 48 345-402 71-118 (145)
233 COG1083 NeuA CMP-N-acetylneura 98.6 9.5E-07 2.1E-11 75.6 13.3 166 8-192 3-186 (228)
234 COG1045 CysE Serine acetyltran 98.6 3.5E-07 7.5E-12 77.4 10.1 78 287-364 71-154 (194)
235 KOG1322 GDP-mannose pyrophosph 98.5 1.5E-07 3.3E-12 85.3 5.4 79 314-402 265-345 (371)
236 cd03349 LbH_XAT Xenobiotic acy 98.5 8.4E-07 1.8E-11 73.6 9.4 35 375-409 80-115 (145)
237 PLN02474 UTP--glucose-1-phosph 98.5 3E-05 6.5E-10 75.7 21.4 181 7-195 78-308 (469)
238 KOG4042 Dynactin subunit p27/W 98.5 1.4E-07 3E-12 75.2 4.3 91 290-389 21-128 (190)
239 KOG3121 Dynactin, subunit p25 98.5 1E-07 2.2E-12 75.3 3.5 88 289-390 45-147 (184)
240 PTZ00339 UDP-N-acetylglucosami 98.4 1.6E-05 3.5E-10 78.2 17.3 179 8-194 106-349 (482)
241 COG0110 WbbJ Acetyltransferase 98.4 2.1E-06 4.6E-11 75.0 9.5 88 295-391 67-159 (190)
242 KOG4750 Serine O-acetyltransfe 98.4 8.1E-07 1.8E-11 76.0 6.3 78 298-389 151-233 (269)
243 COG0110 WbbJ Acetyltransferase 98.3 4.4E-06 9.4E-11 73.0 10.5 91 312-410 66-167 (190)
244 TIGR02353 NRPS_term_dom non-ri 98.3 2.7E-06 5.8E-11 88.4 10.3 76 314-403 617-693 (695)
245 TIGR02353 NRPS_term_dom non-ri 98.3 3.5E-06 7.5E-11 87.6 10.7 93 296-403 113-208 (695)
246 KOG4042 Dynactin subunit p27/W 98.3 1.4E-06 3E-11 69.6 4.8 103 295-402 8-130 (190)
247 PF02348 CTP_transf_3: Cytidyl 98.2 5.7E-06 1.2E-10 73.8 9.3 112 10-136 1-120 (217)
248 cd00897 UGPase_euk Eukaryotic 98.1 0.00019 4.2E-09 66.5 16.6 180 7-195 2-232 (300)
249 COG1861 SpsF Spore coat polysa 98.0 5.2E-05 1.1E-09 65.4 9.6 110 8-136 3-123 (241)
250 PF07959 Fucokinase: L-fucokin 98.0 9.5E-05 2.1E-09 72.3 12.5 85 108-196 54-158 (414)
251 KOG4750 Serine O-acetyltransfe 97.9 4.2E-05 9E-10 65.8 7.4 35 375-409 207-242 (269)
252 PRK13412 fkp bifunctional fuco 97.8 0.00037 7.9E-09 73.9 14.5 133 109-267 154-309 (974)
253 COG4801 Predicted acyltransfer 97.7 0.00016 3.5E-09 62.5 8.5 98 291-404 18-116 (277)
254 PF00132 Hexapep: Bacterial tr 97.7 3.2E-05 7E-10 47.5 2.6 32 297-328 3-34 (36)
255 COG4801 Predicted acyltransfer 97.7 0.00019 4.1E-09 62.1 7.7 71 314-393 17-87 (277)
256 PF00132 Hexapep: Bacterial tr 97.6 4.8E-05 1E-09 46.7 2.6 33 348-389 2-34 (36)
257 PF14602 Hexapep_2: Hexapeptid 97.6 9.2E-05 2E-09 44.6 3.3 28 316-344 4-31 (34)
258 PRK00576 molybdopterin-guanine 97.5 0.00038 8.2E-09 60.1 7.8 89 31-130 3-100 (178)
259 PF01704 UDPGP: UTP--glucose-1 97.5 0.007 1.5E-07 59.1 16.6 182 7-196 55-288 (420)
260 PF14602 Hexapep_2: Hexapeptid 97.3 0.00045 9.8E-09 41.6 3.9 31 296-328 2-32 (34)
261 COG4284 UDP-glucose pyrophosph 97.3 0.0096 2.1E-07 57.7 14.5 156 7-172 104-304 (472)
262 PLN02435 probable UDP-N-acetyl 97.1 0.015 3.3E-07 57.6 14.7 181 7-195 115-363 (493)
263 cd06424 UGGPase UGGPase cataly 96.5 0.035 7.5E-07 51.9 11.1 139 10-156 2-191 (315)
264 PLN02830 UDP-sugar pyrophospho 96.3 0.14 3E-06 52.5 15.0 132 7-144 127-312 (615)
265 KOG2638 UDP-glucose pyrophosph 96.0 1.6 3.4E-05 41.9 19.8 131 6-143 101-274 (498)
266 PF07959 Fucokinase: L-fucokin 95.3 0.039 8.4E-07 54.1 6.2 46 319-364 273-318 (414)
267 PF00535 Glycos_transf_2: Glyc 94.9 0.2 4.4E-06 41.5 8.9 103 36-142 4-115 (169)
268 cd00761 Glyco_tranf_GTA_type G 92.8 1 2.3E-05 36.2 9.3 86 41-130 9-102 (156)
269 TIGR03552 F420_cofC 2-phospho- 92.6 0.34 7.3E-06 42.2 6.3 82 40-131 29-117 (195)
270 cd04195 GT2_AmsE_like GT2_AmsE 90.9 2 4.4E-05 37.1 9.5 93 35-132 3-107 (201)
271 cd06423 CESA_like CESA_like is 89.7 2.8 6.2E-05 34.5 9.1 94 36-132 3-105 (180)
272 cd04186 GT_2_like_c Subfamily 89.6 3.4 7.3E-05 34.0 9.4 90 37-133 4-102 (166)
273 KOG2978 Dolichol-phosphate man 89.4 2.5 5.3E-05 36.1 7.9 96 40-141 17-124 (238)
274 PLN02726 dolichyl-phosphate be 89.2 4 8.6E-05 36.7 10.2 83 54-139 43-127 (243)
275 cd04188 DPG_synthase DPG_synth 88.6 2.9 6.4E-05 36.5 8.7 84 54-140 33-117 (211)
276 cd06439 CESA_like_1 CESA_like_ 88.4 5.7 0.00012 35.6 10.7 98 28-131 25-135 (251)
277 cd06427 CESA_like_2 CESA_like_ 87.5 5 0.00011 35.9 9.7 59 79-140 60-119 (241)
278 TIGR01556 rhamnosyltran L-rham 85.7 16 0.00036 33.5 12.3 87 42-133 8-101 (281)
279 cd04196 GT_2_like_d Subfamily 85.3 5.3 0.00011 34.6 8.5 92 37-131 5-105 (214)
280 cd06442 DPM1_like DPM1_like re 85.2 5 0.00011 35.2 8.3 57 79-138 54-111 (224)
281 PRK13412 fkp bifunctional fuco 84.8 1.9 4.1E-05 46.6 6.0 39 326-364 332-371 (974)
282 PF04519 Bactofilin: Polymer-f 84.7 3.7 8E-05 31.4 6.2 53 303-357 4-57 (101)
283 cd04185 GT_2_like_b Subfamily 84.7 6.3 0.00014 34.0 8.6 88 42-131 10-105 (202)
284 PRK11204 N-glycosyltransferase 84.5 6.1 0.00013 38.9 9.3 95 35-133 59-162 (420)
285 cd02510 pp-GalNAc-T pp-GalNAc- 84.3 7.7 0.00017 36.1 9.5 55 78-135 58-113 (299)
286 cd02520 Glucosylceramide_synth 84.3 8.5 0.00018 33.2 9.2 49 79-130 59-111 (196)
287 cd04187 DPM1_like_bac Bacteria 84.0 8.4 0.00018 32.5 8.9 58 79-140 56-114 (181)
288 cd04179 DPM_DPG-synthase_like 83.9 7.7 0.00017 32.7 8.7 83 54-140 31-114 (185)
289 PRK10714 undecaprenyl phosphat 83.6 9.3 0.0002 36.2 9.8 58 77-138 64-122 (325)
290 cd06435 CESA_NdvC_like NdvC_li 82.6 7.4 0.00016 34.5 8.3 95 36-131 4-110 (236)
291 PF13641 Glyco_tranf_2_3: Glyc 80.5 2.9 6.3E-05 36.9 4.9 99 35-136 6-117 (228)
292 COG1664 CcmA Integral membrane 80.3 11 0.00024 31.2 7.7 62 320-392 58-119 (146)
293 PRK14583 hmsR N-glycosyltransf 78.7 11 0.00024 37.5 8.7 96 34-133 79-183 (444)
294 cd06420 GT2_Chondriotin_Pol_N 78.6 10 0.00023 31.8 7.6 91 37-130 4-104 (182)
295 cd02525 Succinoglycan_BP_ExoA 78.6 13 0.00029 32.9 8.7 80 54-138 34-114 (249)
296 TIGR03472 HpnI hopanoid biosyn 78.5 9.3 0.0002 37.0 8.0 95 35-132 46-153 (373)
297 PRK10073 putative glycosyl tra 77.9 16 0.00034 34.7 9.2 57 79-139 62-119 (328)
298 cd04192 GT_2_like_e Subfamily 77.5 15 0.00032 32.1 8.6 97 36-135 3-112 (229)
299 cd06421 CESA_CelA_like CESA_Ce 76.1 28 0.00061 30.5 10.0 85 43-132 16-111 (234)
300 TIGR03111 glyc2_xrt_Gpos1 puta 76.0 18 0.00039 36.0 9.4 95 35-133 54-159 (439)
301 cd04184 GT2_RfbC_Mx_like Myxoc 74.6 24 0.00052 30.2 8.9 49 79-130 59-108 (202)
302 cd06433 GT_2_WfgS_like WfgS an 74.5 20 0.00043 30.3 8.4 85 42-133 11-103 (202)
303 PF04519 Bactofilin: Polymer-f 72.6 10 0.00022 28.9 5.3 67 313-391 30-97 (101)
304 KOG2388 UDP-N-acetylglucosamin 72.1 9 0.0002 37.7 5.8 42 7-53 96-140 (477)
305 cd06438 EpsO_like EpsO protein 71.1 55 0.0012 27.6 10.2 93 36-132 3-108 (183)
306 PRK10018 putative glycosyl tra 70.4 54 0.0012 30.3 10.5 84 43-132 19-112 (279)
307 PF07302 AroM: AroM protein; 69.5 44 0.00096 29.7 9.1 108 10-130 90-200 (221)
308 COG1664 CcmA Integral membrane 68.5 32 0.00069 28.4 7.6 55 300-356 22-77 (146)
309 cd06434 GT2_HAS Hyaluronan syn 62.1 46 0.001 29.2 8.3 84 42-131 14-103 (235)
310 COG1215 Glycosyltransferases, 62.1 41 0.00088 33.0 8.6 98 34-134 58-166 (439)
311 TIGR03469 HonB hopene-associat 61.8 58 0.0013 31.6 9.4 104 35-138 45-166 (384)
312 cd02526 GT2_RfbF_like RfbF is 61.0 1.1E+02 0.0025 26.6 12.4 82 42-127 11-97 (237)
313 PTZ00260 dolichyl-phosphate be 59.4 90 0.0019 29.7 10.0 50 79-131 138-188 (333)
314 PRK11498 bcsA cellulose syntha 58.6 63 0.0014 35.0 9.5 90 35-133 265-367 (852)
315 cd06437 CESA_CaSu_A2 Cellulose 57.3 40 0.00086 29.7 6.9 51 77-130 60-112 (232)
316 cd06913 beta3GnTL1_like Beta 1 56.2 79 0.0017 27.5 8.6 44 88-134 69-113 (219)
317 COG1216 Predicted glycosyltran 55.8 56 0.0012 30.5 7.9 97 41-140 15-119 (305)
318 PRK10063 putative glycosyl tra 54.0 1.7E+02 0.0036 26.4 10.5 48 79-130 59-106 (248)
319 cd02522 GT_2_like_a GT_2_like_ 50.5 83 0.0018 27.1 7.8 86 37-133 6-100 (221)
320 PF10111 Glyco_tranf_2_2: Glyc 50.0 1.1E+02 0.0023 28.2 8.8 38 88-128 73-111 (281)
321 cd06436 GlcNAc-1-P_transferase 49.9 1.2E+02 0.0026 25.7 8.6 87 42-130 10-114 (191)
322 cd02511 Beta4Glucosyltransfera 44.5 1.8E+02 0.0039 25.6 9.1 81 42-132 13-98 (229)
323 PF01983 CofC: Guanylyl transf 43.5 9.3 0.0002 33.9 0.5 106 9-130 1-113 (217)
324 TIGR03030 CelA cellulose synth 38.8 2.1E+02 0.0045 30.6 9.7 52 79-133 203-256 (713)
325 KOG2977 Glycosyltransferase [G 32.9 2.5E+02 0.0053 26.1 7.7 84 42-128 84-180 (323)
326 PF01762 Galactosyl_T: Galacto 27.7 3.9E+02 0.0084 22.8 9.5 25 173-197 142-166 (195)
327 cd01452 VWA_26S_proteasome_sub 26.4 4.2E+02 0.0091 22.8 8.7 25 8-34 48-72 (187)
328 PRK13915 putative glucosyl-3-p 26.2 3.3E+02 0.0071 25.5 7.9 51 87-140 99-152 (306)
329 PF13712 Glyco_tranf_2_5: Glyc 25.7 2.7E+02 0.0059 24.5 6.9 82 56-140 4-90 (217)
330 PRK14716 bacteriophage N4 adso 24.7 3.5E+02 0.0076 27.5 8.2 96 35-130 71-182 (504)
331 PRK11557 putative DNA-binding 24.2 5.5E+02 0.012 23.4 8.9 79 54-141 131-209 (278)
332 PF05679 CHGN: Chondroitin N-a 23.4 3.4E+02 0.0075 27.5 7.9 103 35-144 252-376 (499)
No 1
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-62 Score=428.14 Aligned_cols=395 Identities=65% Similarity=1.065 Sum_probs=358.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
+++||||-|||++|+||+||+.+.||||.|++|+|||+|-|+.+.+ |++++.|.++.+.+|+.....+++..++
T Consensus 2 ~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~e~~~pvr 81 (407)
T KOG1460|consen 2 KVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGVPMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQEFKVPVR 81 (407)
T ss_pred ceEEEEEecCCCCCccccccccCCCCCccccCCcchhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHhhcccchh
Confidence 5899999999999999999999999999999999999999999998 9999999999999999988888888999
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
|+.++.+.|+++.|+..++.+-+..++.+++++||..++.+|+++++.|++.+..++++.++.+++++..||.+..|+.+
T Consensus 82 YL~E~~plGtaGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~dP~t 161 (407)
T KOG1460|consen 82 YLREDNPLGTAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVEDPST 161 (407)
T ss_pred hhccCCCCCcccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeeecCCc
Confidence 99999999999999999999876778899999999999999999999999999999999999999999999999999889
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccch-hhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRE-NLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
++|+++.|||.+..++.+++|+|+|++++|+.+.+...+.++.. ... ++..... -+.++..|+.|++..|+.
T Consensus 162 ~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~------~~~~l~~-g~~d~irLeqDvlspLag 234 (407)
T KOG1460|consen 162 GEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEK------DLPLLQP-GPADFIRLEQDVLSPLAG 234 (407)
T ss_pred CceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhh------cccccCC-CccceEEeechhhhhhcC
Confidence 99999999999999999999999999999999988765543211 000 0000111 245788899999999999
Q ss_pred CCceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEECCCcEECCCc
Q 015259 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANA 320 (410)
Q Consensus 241 ~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~ 320 (410)
++++|+|.+.++|..+.|+..-+.|+..|+++|+...+..+.++.+. .++|.++++|+|+|.+++.++|++|+.||+++
T Consensus 235 ~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt-~a~IigdVyIhPsakvhptAkiGPNVSIga~v 313 (407)
T KOG1460|consen 235 SKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGT-QAEIIGDVYIHPSAKVHPTAKIGPNVSIGANV 313 (407)
T ss_pred CCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCC-CceEEeeeEEcCcceeCCccccCCCceecCCc
Confidence 99999999999999999999999999999999999888888764333 37899999999999999999999999999999
Q ss_pred EECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceee----eEECCCCEECCCcEEcceEEcC
Q 015259 321 RIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGI----TILGEAVGVEDEVVVTNSIVLP 396 (410)
Q Consensus 321 ~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~----~~i~~~~~i~~~~~v~~~~v~~ 396 (410)
+||+++++.+|+|.++|.|.+|+++-+|+||.++.||..+++.+....+.+... +++|+.+.+++.+.+.+|++.|
T Consensus 314 rvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp 393 (407)
T KOG1460|consen 314 RVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLP 393 (407)
T ss_pred eecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEec
Confidence 999999999999999999999999999999999999999999997666655544 9999999999999999999999
Q ss_pred CcEEcccCCCcccC
Q 015259 397 NKTLNVSVHQEIIL 410 (410)
Q Consensus 397 ~~~v~~~~~~~~~~ 410 (410)
+..+..+++++|++
T Consensus 394 ~k~l~vs~~~eIil 407 (407)
T KOG1460|consen 394 NKELNVSVQDEIIL 407 (407)
T ss_pred CCccceeeecceeC
Confidence 99999999999985
No 2
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=5.9e-56 Score=393.02 Aligned_cols=344 Identities=35% Similarity=0.611 Sum_probs=300.0
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHH-HHHHHhhcccCCccE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREF-ALYVSSISNELRIPV 80 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i-~~~~~~~~~~~~~~i 80 (410)
+.|+||||-|| .|+||+|||.++||||+|++|+|||+|++++|.+ |++.+.+..+++ .+..+....++|.++
T Consensus 8 ~~vkaiILvGG--~GTRLrPLT~t~pKPlVpfgn~pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y~~~lgVei 85 (371)
T KOG1322|consen 8 QSVKAIILVGG--YGTRLRPLTLTRPKPLVPFGNKPMILHQIEALINSGITKIVLATQYNSESLNRHLSKAYGKELGVEI 85 (371)
T ss_pred cceeEEEEecC--CCceeeceeccCCCcccccCcchhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHhhhccceEE
Confidence 68999999999 9999999999999999999999999999999998 888888877644 444444445566677
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
.+..|.++.|+++.+..+++++....+.+|+||+||++++.++.+++++|+++++++|++.+++ ++++.||++..|.+
T Consensus 86 ~~s~eteplgtaGpl~laR~~L~~~~~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~v--depSkyGvv~~d~~ 163 (371)
T KOG1322|consen 86 LASTETEPLGTAGPLALARDFLWVFEDAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKV--DEPSKYGVVVIDED 163 (371)
T ss_pred EEEeccCCCcccchHHHHHHHhhhcCCCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEec--cCccccceEEEecC
Confidence 7777888999999999999998754334899999999999999999999999999999999999 66999999999944
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
+++|.+|.|||+...+.-+++|+|+|++++++.+.... + +|+.++++.+++
T Consensus 164 ~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~~p--------------------------t---SiekEifP~~a~ 214 (371)
T KOG1322|consen 164 TGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILLRP--------------------------T---SIEKEIFPAMAE 214 (371)
T ss_pred CCceeEehhCchhhhhccccceEEEECHHHHhHhhhcc--------------------------c---chhhhhhhhhhh
Confidence 89999999999988899999999999999998876321 1 155889998999
Q ss_pred CCceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEECCCcEECCCc
Q 015259 241 KKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANA 320 (410)
Q Consensus 241 ~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~ 320 (410)
.+++++|.++|||+||++|.||+.+...|++......+..+. +++.+.+++.+.+.+.+|++|.|+++++||++|
T Consensus 215 ~~~l~a~~l~gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~-----p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~ 289 (371)
T KOG1322|consen 215 EHQLYAFDLPGFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLL-----PGSKIVGNVLVDSIASIGENCSIGPNVVIGPRV 289 (371)
T ss_pred cCceEEEecCchhhhcCCHHHHHHHHHHHHhhCcccCCcccc-----CCccccccEeeccccccCCccEECCCceECCCc
Confidence 999999999999999999999999998888765443222222 246788899999999999999999999999999
Q ss_pred EECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCC
Q 015259 321 RIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPN 397 (410)
Q Consensus 321 ~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~ 397 (410)
+|+.++.|.+|.|+.+..++.++.|..++++.++.||.+++|... ++||+++.|.+.-.+.+..+.+.
T Consensus 290 ~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~---------a~lG~nV~V~d~~~vn~g~~l~~ 357 (371)
T KOG1322|consen 290 RIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKN---------AVLGKNVIVADEDYVNEGSGLPI 357 (371)
T ss_pred EecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecc---------cEeccceEEecccccccceeEEe
Confidence 999999999999999999999999999999999999999999998 99999999988888865544443
No 3
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-53 Score=402.87 Aligned_cols=341 Identities=33% Similarity=0.536 Sum_probs=284.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
.|+||||||| +|+||+|||..+||||+|++|+|||+|+|++|.+ +++++.+..+++++++.+. ..++.++.+
T Consensus 1 ~mkavILagG--~GtRLrPlT~~~PKPllpI~gkPii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~-~~~~~~I~y 77 (358)
T COG1208 1 PMKAVILAGG--YGTRLRPLTDDRPKPLLPIAGKPLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDG-EGLGVRITY 77 (358)
T ss_pred CceEEEEeCC--ccccccccccCCCcccceeCCccHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcc-cccCCceEE
Confidence 4899999999 9999999999999999999999999999999987 7788888899999999874 456789999
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
+.+....||+++|+++++++. .++|++++||.+++.++.+++++|+++.+.++++..+. .++..||++..+.+++
T Consensus 78 ~~e~~~lGTag~l~~a~~~l~---~~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~--~~~~~~Gvv~~~~~~~ 152 (358)
T COG1208 78 VVEKEPLGTAGALKNALDLLG---GDDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRV--LDPSEFGVVETDDGDG 152 (358)
T ss_pred EecCCcCccHHHHHHHHHhcC---CCcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEec--CCCCcCceEEecCCCc
Confidence 999999999999999999996 37999999999999999999999999877788888777 4457899988873335
Q ss_pred cEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 163 ELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 163 ~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
+|..|.|||. ...++++++|+|+|++++|+.+... ..+++..++++.+++
T Consensus 153 ~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~~i~~~----------------------------~~~~~~~~~~~~l~~ 204 (358)
T COG1208 153 RVVEFREKPGPEEPPSNLINAGIYIFDPEVFDYIEKG----------------------------ERFDFEEELLPALAA 204 (358)
T ss_pred eEEEEEecCCCCCCCCceEEeEEEEECHHHhhhcccC----------------------------CcccchhhHHHHHHh
Confidence 9999999983 5678999999999999999955421 334454679999998
Q ss_pred CCc-eeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccC-CC-CCCCcEEccCeEECCCCEECCCcEECCCcEEC
Q 015259 241 KKQ-LYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLAS-GD-GTKNATIIGDVYVHPSAKIHPTAKIGPNVSIS 317 (410)
Q Consensus 241 ~~~-i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~-~~-~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig 317 (410)
.+. ++++...|+|+++++|++|+++++.+++............ .. ... +.+.+|++|+++|.|++++.|+++++||
T Consensus 205 ~~~~v~~~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig 283 (358)
T COG1208 205 KGEDVYGYVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGPGAKIGPGALIGPYTVIG 283 (358)
T ss_pred CCCcEEEEEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECCCCEECCCCEECCCcEEC
Confidence 886 9999999999999999999999999886433221110000 00 112 7889999999999999999999999999
Q ss_pred CCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcC
Q 015259 318 ANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLP 396 (410)
Q Consensus 318 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~ 396 (410)
++|+|++++.|.+|+|+++|.|+++++|.+|+|+++|.||++. .||+ +.+|.++.+ ++.++++
T Consensus 284 ~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~~---------------~i~d-~~~g~~~~i~~g~~~~~ 347 (358)
T COG1208 284 EGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGASL---------------IIGD-VVIGINSEILPGVVVGP 347 (358)
T ss_pred CCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCce---------------eecc-eEecCceEEcCceEeCC
Confidence 9999999999999999999999999999999999999999911 1555 555555555 3444555
Q ss_pred CcEEc
Q 015259 397 NKTLN 401 (410)
Q Consensus 397 ~~~v~ 401 (410)
++.+.
T Consensus 348 ~~~~~ 352 (358)
T COG1208 348 GSVVE 352 (358)
T ss_pred Ccccc
Confidence 54443
No 4
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.6e-51 Score=373.96 Aligned_cols=337 Identities=23% Similarity=0.387 Sum_probs=252.6
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCc
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI 78 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~ 78 (410)
|++++-|+||||| .|+||.|||+.++||.+|++|+ +||+++|+++.+ |.|++.+....+.+|++.+ ..|+.
T Consensus 2 ~~~~~laiILaGg--~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G-~~w~l 78 (393)
T COG0448 2 MKKNVLAIILAGG--RGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRG-WPWDL 78 (393)
T ss_pred CccceEEEEEcCC--CCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCC-Ccccc
Confidence 5668999999999 9999999999999999999999 999999999998 9999999999999999987 45643
Q ss_pred -----cEEEeeC-------CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCc
Q 015259 79 -----PVRYLRE-------DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSA 146 (410)
Q Consensus 79 -----~i~~i~~-------~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~ 146 (410)
.+.+++. .+..|+++++++.+..+.+..+++++++.||++++.|+.++|++|.++++++|+++.+++.
T Consensus 79 ~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~Vp~ 158 (393)
T COG0448 79 DRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRSDPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEVPR 158 (393)
T ss_pred ccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhcCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEECCh
Confidence 3444432 2567999999998888876678999999999999999999999999999999999999998
Q ss_pred ccccccceEEEcCCCCcEEEEecCCCC-cccc-ceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCC
Q 015259 147 ESASQFGELVADPDTNELLHYTEKPET-FVSD-LINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNL 223 (410)
Q Consensus 147 ~~~~~~~~v~~d~~~~~v~~i~ekp~~-~~~~-l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (410)
+++++||++.+| ++++|..|.|||.. +.++ ++++|+|+|++++| ++|++... .
T Consensus 159 ~eas~fGim~~D-~~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~-----------------------~ 214 (393)
T COG0448 159 EEASRFGVMNVD-ENGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAK-----------------------D 214 (393)
T ss_pred HhhhhcCceEEC-CCCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhc-----------------------c
Confidence 899999999999 89999999999986 4444 89999999999875 66664321 1
Q ss_pred CCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCC-CCCCcEEccCeEECCCC
Q 015259 224 TTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGD-GTKNATIIGDVYVHPSA 302 (410)
Q Consensus 224 ~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~i~~~~ 302 (410)
+.+..+|..++++.+++.+.+++|+++|||.+|+|.++|++||+.++..-... .++.+.- -++.....+|+++..++
T Consensus 215 ~~~~~DfgkdiIp~~~~~~~v~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~--~lyd~~w~IyT~~~~~pPak~~~~s 292 (393)
T COG0448 215 PNSSHDFGKDIIPKLLERGKVYAYEFSGYWRDVGTIDSYYEANMDLLSPQPEL--NLYDRNWPIYTKNKNLPPAKFVNDS 292 (393)
T ss_pred cCccccchHHHHHHHHhcCCEEEEeccchhhhcccHHHHHHhhHHhcCCCCcc--cccCCCCceeecCCCCCCceEecCc
Confidence 23556677999999998889999999999999999999999999998721110 1111100 01233345555555544
Q ss_pred EECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCE
Q 015259 303 KIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVG 382 (410)
Q Consensus 303 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~ 382 (410)
.+. +|.|+++|.|. + .|.||+|+.|++|+++|+|++|+|+++|.||.+|.|.. ++|.++|.
T Consensus 293 ~v~-------nSLv~~GciI~-G-~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~----------aIIDk~v~ 353 (393)
T COG0448 293 EVS-------NSLVAGGCIIS-G-TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRR----------AIIDKNVV 353 (393)
T ss_pred eEe-------eeeeeCCeEEE-e-EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEE----------EEeCCCcE
Confidence 432 44444444442 2 44455555555555555555555555555555555544 45555555
Q ss_pred ECCCcEE
Q 015259 383 VEDEVVV 389 (410)
Q Consensus 383 i~~~~~v 389 (410)
|++|++|
T Consensus 354 I~~g~~i 360 (393)
T COG0448 354 IGEGVVI 360 (393)
T ss_pred eCCCcEE
Confidence 5555544
No 5
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=7.2e-50 Score=388.13 Aligned_cols=350 Identities=23% Similarity=0.384 Sum_probs=256.2
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCcc
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (410)
|++|+||||||| +|+||+|||..+||||+|++|+ |||+|+|++|.+ ++|++.+..+.+.+|+++. .+|+..
T Consensus 1 ~~~m~avILAaG--~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~-~~~~~~ 77 (380)
T PRK05293 1 KKEMLAMILAGG--QGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIG-SPWDLD 77 (380)
T ss_pred CCcEEEEEECCC--CCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCC-Cccccc
Confidence 568999999999 9999999999999999999999 899999999997 7778888888999999764 456532
Q ss_pred -----EE----EeeCCC---CCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcc
Q 015259 80 -----VR----YLREDK---PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE 147 (410)
Q Consensus 80 -----i~----~i~~~~---~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~ 147 (410)
+. +..+.+ ..|++++++++++++....+++|||++||.+++.++.++++.|++.++++++++...+.+
T Consensus 78 ~~~~~~~i~~~~~~~~~~~~~~Gta~al~~a~~~l~~~~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~ 157 (380)
T PRK05293 78 RINGGVTILPPYSESEGGKWYKGTAHAIYQNIDYIDQYDPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWE 157 (380)
T ss_pred CCCCCEEEeCCcccCCCCcccCCcHHHHHHHHHHHHhCCCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchh
Confidence 22 232222 489999999999998533236899999999999999999999988888888887665445
Q ss_pred cccccceEEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHH-HhhhcccccccchhhhccchhHhhhhhccCCCCC
Q 015259 148 SASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (410)
Q Consensus 148 ~~~~~~~v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (410)
++..||++..| ++++|..+.|||..+.+++.++|+|+|++++|. .+.+.... +.+
T Consensus 158 ~~~~yG~v~~d-~~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~-----------------------~~~ 213 (380)
T PRK05293 158 EASRFGIMNTD-ENMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKN-----------------------PNS 213 (380)
T ss_pred hccccCEEEEC-CCCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhc-----------------------CCc
Confidence 67789999888 568999999999766788999999999999874 44421100 001
Q ss_pred eeeeccchhccccCC-CceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCC-CCCCCcEEccCeEECCCCEE
Q 015259 227 FVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG-DGTKNATIIGDVYVHPSAKI 304 (410)
Q Consensus 227 ~~~l~~d~l~~l~~~-~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~i~~~~~i 304 (410)
..++..|+++.++++ .+++++...|+|.+++|+++|+++++.++...... .++... .....+.+.++++|++++.|
T Consensus 214 ~~~~~~d~i~~l~~~~~~v~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~i 291 (380)
T PRK05293 214 SHDFGKNVIPLYLEEGEKLYAYPFKGYWKDVGTIESLWEANMELLRPENPL--NLFDRNWRIYSVNPNLPPQYIAENAKV 291 (380)
T ss_pred hhhhHHHHHHHHhhcCCeEEEEEeCCEEEeCCCHHHHHHHHHHHcCCCchh--hhcCCCCceecCCcCCCCCEECCCCEE
Confidence 223337999988865 47999999999999999999999998887643221 111110 00112334445555554444
Q ss_pred CCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEEC
Q 015259 305 HPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVE 384 (410)
Q Consensus 305 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~ 384 (410)
. ++.||++|+|+ ..+.+|+||++|.|+++|+|.+|+|+++|.|++++.|.+ |+|++++.|+
T Consensus 292 ------~-~~~Ig~~~~I~--~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~----------~ii~~~~~i~ 352 (380)
T PRK05293 292 ------K-NSLVVEGCVVY--GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIER----------AIIGENAVIG 352 (380)
T ss_pred ------e-cCEECCCCEEc--ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeE----------EEECCCCEEC
Confidence 2 55666666664 245667777777777777777777777777777777766 6777777777
Q ss_pred CCcEEcc-----eEEcCCcEEccc
Q 015259 385 DEVVVTN-----SIVLPNKTLNVS 403 (410)
Q Consensus 385 ~~~~v~~-----~~v~~~~~v~~~ 403 (410)
+++.+.+ .+||.+..|..+
T Consensus 353 ~~~~i~~~~~~~~~ig~~~~~~~~ 376 (380)
T PRK05293 353 DGVIIGGGKEVITVIGENEVIGVG 376 (380)
T ss_pred CCCEEcCCCceeEEEeCCCCCCCC
Confidence 7777743 556666655443
No 6
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=4.4e-49 Score=384.49 Aligned_cols=332 Identities=24% Similarity=0.374 Sum_probs=240.9
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCc
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI 78 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~ 78 (410)
||.+|+||||||| +|+||+|||..+||||+|++|+ |||+|+|++|.+ |+|++.+..+++.+|+...+...+.
T Consensus 2 ~~~~~~avILAaG--~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~ 79 (407)
T PRK00844 2 AMPKVLAIVLAGG--EGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLSGL 79 (407)
T ss_pred CCCceEEEEECCC--CCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcccc
Confidence 5678999999999 9999999999999999999999 999999999997 8888888889999999742111122
Q ss_pred cEEEee---CC------CCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccc
Q 015259 79 PVRYLR---ED------KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESA 149 (410)
Q Consensus 79 ~i~~i~---~~------~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~ 149 (410)
.+.++. +. ...|++++++.+++++.....++|++++||++++.++.+++++|+++++++++++.+.+.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~~~~~~~~ 159 (407)
T PRK00844 80 LGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDEDPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAIRVPREEA 159 (407)
T ss_pred CCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEEecchHHc
Confidence 223321 11 258999999999999963323569999999999999999999999888888888876544567
Q ss_pred cccceEEEcCCCCcEEEEecCCCCcc-------ccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhcc
Q 015259 150 SQFGELVADPDTNELLHYTEKPETFV-------SDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATR 221 (410)
Q Consensus 150 ~~~~~v~~d~~~~~v~~i~ekp~~~~-------~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (410)
..||++..| ++++|..|.|||.... +.++++|+|+|++++| +.|.+....
T Consensus 160 ~~~Gvv~~d-~~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~--------------------- 217 (407)
T PRK00844 160 SAFGVIEVD-PDGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAAD--------------------- 217 (407)
T ss_pred ccCCEEEEC-CCCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcC---------------------
Confidence 789999998 6789999999986432 5789999999999986 666542110
Q ss_pred CCCCCeeeeccchhccccCCCceeEEec------------cceeeecCCccchhhhhHHHHhhhhhc-----CCCcccCC
Q 015259 222 NLTTDFVRLDQDILSPLAGKKQLYTYET------------MDFWEQIKTPGMSLKCSGLYLAQFRLT-----SPNLLASG 284 (410)
Q Consensus 222 ~~~~~~~~l~~d~l~~l~~~~~i~~~~~------------~g~~~~i~t~~~~~~an~~~~~~~~~~-----~~~~~~~~ 284 (410)
+.+.+++..|+++.+++++.+++|.+ .|+|.|++++++|+++++.++...... ...+....
T Consensus 218 --~~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~ 295 (407)
T PRK00844 218 --EDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSS 295 (407)
T ss_pred --CcccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccC
Confidence 01223444799999998888999965 599999999999999999998642211 00011000
Q ss_pred -CCCC--------CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCE
Q 015259 285 -DGTK--------NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSS 355 (410)
Q Consensus 285 -~~~~--------~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~ 355 (410)
+.+. ...+.++++|+++|.|+ ++.|. +|+||++|+|+++|.|.+|+|+++|+|+++|+|.+|+|++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~ 373 (407)
T PRK00844 296 PNLPPAKFVDGGGRVGSAQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVV 373 (407)
T ss_pred CCCCCceEecCCCccceEEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCE
Confidence 0000 01123445666666665 56665 5666666666666666666666666666666666666666666
Q ss_pred ECCCcEEcc
Q 015259 356 IGRWSRVQA 364 (410)
Q Consensus 356 i~~~~~i~~ 364 (410)
|+++++|.+
T Consensus 374 i~~~~~i~~ 382 (407)
T PRK00844 374 VPPGATIGV 382 (407)
T ss_pred ECCCCEECC
Confidence 666666655
No 7
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2.2e-47 Score=366.89 Aligned_cols=340 Identities=24% Similarity=0.329 Sum_probs=278.7
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEeccc-chHHHHHHHHhhcccCCccEEEe
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~-~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+.+.+ +++++.+ ..+.+.+++++. ..|+.++.++
T Consensus 1 kaiIlAaG--~gtRl~plt~~~pK~l~pv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~-~~~~~~~~~~ 77 (353)
T TIGR01208 1 KALILAAG--KGTRLRPLTFTRPKQLIPVANKPILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEG-ERFGAKITYI 77 (353)
T ss_pred CEEEECCc--CcCccCccccCCCccccEECCEeHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcc-cccCceEEEE
Confidence 58999999 9999999999999999999999999999999997 6666666 778889998764 4677778887
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~ 163 (410)
.+....|++++++.+++++. .++|++++||.+++.++.++++.|+++++++++++.+. +++..|+++..+ ++++
T Consensus 78 ~~~~~~G~~~al~~a~~~l~---~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~--~~~~~~g~~~~~-~~~~ 151 (353)
T TIGR01208 78 VQGEPLGLAHAVYTARDFLG---DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKV--RDPTAFGVAVLE-DGKR 151 (353)
T ss_pred ECCCCCCHHHHHHHHHHhcC---CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEEC--CChhhCeEEEEc-CCCc
Confidence 77778999999999999985 36899999999999999999999998888889888876 456679988876 5678
Q ss_pred EEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC-
Q 015259 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK- 242 (410)
Q Consensus 164 v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~- 242 (410)
|..+.+||....+++.++|+|+|++.+++.+.+..... .+.+++ .|+++.+++++
T Consensus 152 v~~~~ekp~~~~~~~~~~Giy~~~~~l~~~l~~~~~~~-----------------------~~e~~l-~d~l~~l~~~g~ 207 (353)
T TIGR01208 152 ILKLVEKPKEPPSNLAVVGLYMFRPLIFEAIKNIKPSW-----------------------RGELEI-TDAIQWLIEKGY 207 (353)
T ss_pred EEEEEECCCCCCccceEEEEEEECHHHHHHHHhcCCCC-----------------------CCcEEH-HHHHHHHHHcCC
Confidence 99999999877788999999999998888886432110 123445 78999988665
Q ss_pred ceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEECCCcEECCCcEE
Q 015259 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARI 322 (410)
Q Consensus 243 ~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i 322 (410)
++++|..+|+|.+++||++|+++++.++.+....... ....+.+.++++|++++.| .++.|.+++.||++|+|
T Consensus 208 ~v~~~~~~g~w~digt~~dl~~a~~~ll~~~~~~~~~------i~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I 280 (353)
T TIGR01208 208 KVGGSKVTGWWKDTGKPEDLLDANRLILDEVEREVQG------VDDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCII 280 (353)
T ss_pred eEEEEEeCcEEEeCCCHHHHHHHHHHHHhhcccccCC------cCCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEE
Confidence 7999999999999999999999999998743221111 1235677888999999999 78888888888888888
Q ss_pred CCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCc-EEccCCCCCcceeeeEECCCCEECCCcEEc---ceEEcCC
Q 015259 323 GAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWS-RVQAEGDFNAKLGITILGEAVGVEDEVVVT---NSIVLPN 397 (410)
Q Consensus 323 ~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~-~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~---~~~v~~~ 397 (410)
+ ++.|. +|+|+++|.|+ ++.|.+|+|++++.|+.++ .+.+ ++|++++.|++++.+. +.++|..
T Consensus 281 ~-~~~i~~~~~Ig~~~~i~-~~~i~~s~i~~~~~i~~~~~~~~~----------~ii~~~~~i~~~~~~~~~~~~~~g~~ 348 (353)
T TIGR01208 281 E-NSYIGPYTSIGEGVVIR-DAEVEHSIVLDESVIEGVQARIVD----------SVIGKKVRIKGNRRRPGDLRLTIGDY 348 (353)
T ss_pred c-CcEECCCCEECCCCEEe-eeEEEeeEEcCCCEEcCCcceeec----------CEEcCCCEECCCcccccccceEEcCC
Confidence 7 45554 77788888887 6778899999999998884 7776 8999999999999995 3567776
Q ss_pred cEEc
Q 015259 398 KTLN 401 (410)
Q Consensus 398 ~~v~ 401 (410)
+.|.
T Consensus 349 ~~~~ 352 (353)
T TIGR01208 349 SQVE 352 (353)
T ss_pred ceec
Confidence 6653
No 8
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1.9e-47 Score=375.70 Aligned_cols=357 Identities=22% Similarity=0.345 Sum_probs=266.6
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCcc
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (410)
|++|+||||||| +|+||+|||..+||||+|++|+ |||+|+|+++.+ ++|++.+..+.+.+|++..+ .|+..
T Consensus 1 ~~~~~aIIlA~G--~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~-~~~~~ 77 (436)
T PLN02241 1 PKSVAAIILGGG--AGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAY-NFGNG 77 (436)
T ss_pred CCceEEEEEeCC--CCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccC-CCCCC
Confidence 468999999999 9999999999999999999997 999999999987 88888888889999998531 12211
Q ss_pred -------EEEe--eCC-----CCCCcHHHHHHhHHHhcccC---CCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEE
Q 015259 80 -------VRYL--RED-----KPHGSAGALYNFRDLIMEDN---PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVI 142 (410)
Q Consensus 80 -------i~~i--~~~-----~~~g~~~~l~~~~~~l~~~~---~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~ 142 (410)
+.+. .+. +..|++++++.++.++.+.. .++||+++||.+++.++.+++++|+++++++|+++.
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~ 157 (436)
T PLN02241 78 GNFGDGFVEVLAATQTPGEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACL 157 (436)
T ss_pred cccCCCCEEEcCCcccCCCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEE
Confidence 2222 221 36899999999887765322 478999999999999999999999999999999988
Q ss_pred ecCcccccccceEEEcCCCCcEEEEecCCCCcc---------------------ccceeeeEEEEcHHHHH-Hhhhcccc
Q 015259 143 KVSAESASQFGELVADPDTNELLHYTEKPETFV---------------------SDLINCGVYVFTPDIFN-AIQGVSSQ 200 (410)
Q Consensus 143 ~~~~~~~~~~~~v~~d~~~~~v~~i~ekp~~~~---------------------~~l~~~Giy~~~~~~~~-~l~~~~~~ 200 (410)
+...+++..|+++..| ++++|..|.|||..+. ++++++|+|+|++++|. .+++....
T Consensus 158 ~v~~~~~~~ygvv~~d-~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~ 236 (436)
T PLN02241 158 PVDESRASDFGLMKID-DTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPT 236 (436)
T ss_pred ecchhhcCcceEEEEC-CCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhccc
Confidence 8755566889999998 6789999999985432 37999999999999985 44432210
Q ss_pred cccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCC-CceeEEeccceeeecCCccchhhhhHHHHhhhhhc---
Q 015259 201 RKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK-KQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLT--- 276 (410)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~-~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~--- 276 (410)
..++..|+++.++++ .++++|.++|||.++++|++|+++++.++......
T Consensus 237 --------------------------~~~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~ 290 (436)
T PLN02241 237 --------------------------ANDFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFY 290 (436)
T ss_pred --------------------------ccchhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhcc
Confidence 112347899988876 58999999999999999999999999998743110
Q ss_pred --CCCcccCCCC-----CCCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECC--------------
Q 015259 277 --SPNLLASGDG-----TKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILD-------------- 335 (410)
Q Consensus 277 --~~~~~~~~~~-----~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~-------------- 335 (410)
...+...... ..++.+.+ ++|+++|.|+ +|.|+ +|+|+++|.|+++|.|.+|+++.
T Consensus 291 ~~~~~i~~~~~~~~~~~~~~~~i~~-s~I~~~~~I~-~~~I~-~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~ 367 (436)
T PLN02241 291 DPDAPIYTSPRFLPPSKIEDCRITD-SIISHGCFLR-ECKIE-HSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLL 367 (436)
T ss_pred CCCCcccccCCCCCCcEecCCeEEE-eEEcCCcEEc-CeEEE-eeEEcCCCEECCCCEEEEeEEECCCcccccccccccc
Confidence 0111111000 02333443 7788888888 88886 78899999999999998888755
Q ss_pred --C---CEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCc-EE-cceEEcCCc
Q 015259 336 --G---VEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEV-VV-TNSIVLPNK 398 (410)
Q Consensus 336 --~---~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~-~v-~~~~v~~~~ 398 (410)
+ +.|+++|+|.+++|+++|+||+++.|.+... ..+..++|+++.|++|. +| .+..|.+|+
T Consensus 368 ~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 434 (436)
T PLN02241 368 AEGKVPIGIGENTKIRNAIIDKNARIGKNVVIINKDG---VQEADREEEGYYIRSGIVVILKNAVIPDGT 434 (436)
T ss_pred ccCCcceEECCCCEEcceEecCCCEECCCcEEecccc---cCCccccccccEEeCCEEEEcCCcEeCCCC
Confidence 3 3789999999999999999999988875411 11113445666666653 33 333444444
No 9
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.8e-47 Score=374.69 Aligned_cols=327 Identities=23% Similarity=0.361 Sum_probs=248.9
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcc--cCC
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISN--ELR 77 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~--~~~ 77 (410)
|++++||||||| +|+||+|||..+||||+|++|+ |||+|+|++|.+ ++|++.+..+.+.+++++... .+.
T Consensus 1 m~~~~AVILAaG--~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~~~~ 78 (429)
T PRK02862 1 MKRVLAIILGGG--AGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFDGFS 78 (429)
T ss_pred CCcEEEEEECCC--CCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCccccC
Confidence 457999999999 9999999999999999999999 999999999997 788888888889999875211 011
Q ss_pred cc-EEEe--eCC-----CCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccc
Q 015259 78 IP-VRYL--RED-----KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESA 149 (410)
Q Consensus 78 ~~-i~~i--~~~-----~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~ 149 (410)
.. +.+. .+. ...|++++++++++++....+++|+|++||++++.++.++++.|++.++++|+++.+...+++
T Consensus 79 ~g~~~i~~~~~~~~~~~~~lGTa~al~~a~~~l~~~~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~ 158 (429)
T PRK02862 79 GGFVEVLAAQQTPENPSWFQGTADAVRKYLWHFQEWDVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDA 158 (429)
T ss_pred CCEEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhc
Confidence 11 2221 111 127999999999999864334689999999999999999999999888888988877654567
Q ss_pred cccceEEEcCCCCcEEEEecCCCCc---------------------cccceeeeEEEEcHHHHH-Hhhhcccccccchhh
Q 015259 150 SQFGELVADPDTNELLHYTEKPETF---------------------VSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENL 207 (410)
Q Consensus 150 ~~~~~v~~d~~~~~v~~i~ekp~~~---------------------~~~l~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~ 207 (410)
..||++..| ++++|..|.|||... ...++++|+|+|++++|. .+.+..
T Consensus 159 ~~yG~i~~d-~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~--------- 228 (429)
T PRK02862 159 SGFGLMKTD-DDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP--------- 228 (429)
T ss_pred ccceEEEEC-CCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC---------
Confidence 789999998 678999999998631 235889999999999985 444321
Q ss_pred hccchhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhhhhhc------CCCcc
Q 015259 208 RRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLT------SPNLL 281 (410)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~------~~~~~ 281 (410)
++.++..|+++.+++++.+++|...|+|.+++|+++|+++|+.++...... ...+.
T Consensus 229 ------------------~~~~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~ 290 (429)
T PRK02862 229 ------------------EYTDFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIY 290 (429)
T ss_pred ------------------ChhhhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCcee
Confidence 122343688888888889999999999999999999999999987321110 00111
Q ss_pred cCCC-----CCCCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECC-------------------CC
Q 015259 282 ASGD-----GTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILD-------------------GV 337 (410)
Q Consensus 282 ~~~~-----~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~-------------------~~ 337 (410)
.... ....+.+. +++|+++|.| +++.|. +|+||++|+||++|.|.+|+|+. ++
T Consensus 291 ~~~~~~~~a~~~~~~~~-~~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~ 367 (429)
T PRK02862 291 TRARYLPPSKLLDATIT-ESIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPL 367 (429)
T ss_pred ccCCCCCCccccccEEE-eCEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCccc
Confidence 0000 01123333 4678888888 777776 68888888888888888888865 68
Q ss_pred EECCCCEEEeeEECCCCEECCCcEEccC
Q 015259 338 EIMENAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 338 ~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
.||++|.|.+|+|+++|.||++++|.+.
T Consensus 368 ~Ig~~~~i~~~ii~~~~~i~~~~~~~~~ 395 (429)
T PRK02862 368 GIGEGTTIKRAIIDKNARIGNNVRIVNK 395 (429)
T ss_pred EECCCCEEEEEEECCCcEECCCcEEecC
Confidence 8888888888888888888888888654
No 10
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=2.3e-47 Score=369.01 Aligned_cols=340 Identities=17% Similarity=0.256 Sum_probs=257.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchH-HHHHHHHhhcccCCccE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEER-EFALYVSSISNELRIPV 80 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~-~i~~~~~~~~~~~~~~i 80 (410)
+|+||||||| +|+||+|||..+||||+|++|+ |||+|+|++|.+ |+|++.+..+ ++++|+++. ..|+.++
T Consensus 2 ~~~avila~g--~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~-~~~~~~~ 78 (369)
T TIGR02092 2 KMSAIINLTE--SSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSG-REWDLHR 78 (369)
T ss_pred cEEEEEECCC--CCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCC-CCCCccc
Confidence 6999999999 9999999999999999999999 999999999998 7777777665 899999764 4566553
Q ss_pred ------EEeeC-CCC--CCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccc
Q 015259 81 ------RYLRE-DKP--HGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQ 151 (410)
Q Consensus 81 ------~~i~~-~~~--~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~ 151 (410)
.++.+ ... .|++++++.+++++....+++|||++||++++.++.+++++|+++++++|+++.+...+++..
T Consensus 79 ~~~~~~~~~~~e~~~l~tg~~~a~~~a~~~l~~~~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~ 158 (369)
T TIGR02092 79 KRDGLFVFPYNDRDDLSEGGKRYFSQNLEFLKRSTSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASE 158 (369)
T ss_pred ccCcEEEEeccCCCCcccChHHHHHHHHHHHHhCCCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccc
Confidence 22222 223 356667888888884222468999999999999999999999988899999988774345667
Q ss_pred cce-EEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeee
Q 015259 152 FGE-LVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (410)
Q Consensus 152 ~~~-v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (410)
|+. +..+ +++++..+.+++.......+++|+|+|+++++ +.+.+.... ++..
T Consensus 159 ~g~vv~~~-~~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~-------------------------~~~~ 212 (369)
T TIGR02092 159 YDTILRFD-ESGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQR-------------------------GKLT 212 (369)
T ss_pred cCcEEEEc-CCCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhc-------------------------Cccc
Confidence 854 5565 45678777543322234567899999999865 555432110 1111
Q ss_pred eccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCC--CCCCcEEccCeEECCCCEECCC
Q 015259 230 LDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGD--GTKNATIIGDVYVHPSAKIHPT 307 (410)
Q Consensus 230 l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~i~~~~~i~~~ 307 (410)
+..++++.+++++.++++..+|+|.+++|+++|++|+..+++.+... ..+.... ......+.+|++|++++.
T Consensus 213 ~~~d~i~~~~~~~~v~~~~~~g~w~dIgt~~~l~~a~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~p~~i~~~~~---- 286 (369)
T TIGR02092 213 SLEELIRENLKELNINAYEYTGYLANINSVKSYYKANMDLLDPQNFQ--SLFYSSQGPIYTKVKDEPPTYYAENSK---- 286 (369)
T ss_pred cHHHHHHHHhccCcEEEEecCCceeEcCCHHHHHHHHHHHhCCcchh--hhcCCCCCceeeccCCCCCcEEcCCCE----
Confidence 22688888887788999999999999999999999999988764432 1111100 001111235555555544
Q ss_pred cEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCc
Q 015259 308 AKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEV 387 (410)
Q Consensus 308 ~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~ 387 (410)
| ++++||++|+|+ +.|.+|+|+++|.|+++|.|.+|+|++++.|++++++.+ |+||+++.|++++
T Consensus 287 --i-~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~----------~ii~~~~~v~~~~ 351 (369)
T TIGR02092 287 --V-ENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLEN----------VIIDKDVVIEPNV 351 (369)
T ss_pred --E-EEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEE----------EEECCCCEECCCC
Confidence 4 378899999996 468899999999999999999999999999999999988 9999999999999
Q ss_pred EEcceEEcCC
Q 015259 388 VVTNSIVLPN 397 (410)
Q Consensus 388 ~v~~~~v~~~ 397 (410)
.+.+..+.|.
T Consensus 352 ~~~~~~~~~~ 361 (369)
T TIGR02092 352 KIAGTSEQPL 361 (369)
T ss_pred EeCCCCCccE
Confidence 9976655554
No 11
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.8e-46 Score=367.35 Aligned_cols=333 Identities=18% Similarity=0.287 Sum_probs=234.4
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCcc-chhhhHhhccc-----EEEecccchHHHHHHHHhhccc---
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQP-MVHHPISACKR-----IYLVGFYEEREFALYVSSISNE--- 75 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~p-li~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~--- 75 (410)
|+.+++||||||| +|+||+|||..+||||+|++|+| ||+|+|+.|.+ ++|++.+..+.+.+|+++.+..
T Consensus 12 ~~~~~~aVILAaG--~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~~~ 89 (425)
T PRK00725 12 LTRDTLALILAGG--RGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFFRE 89 (425)
T ss_pred hhcceEEEEECCC--CCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhccccc
Confidence 4568999999999 99999999999999999999996 99999999997 8888888888899998753110
Q ss_pred -CCccEEEee-------CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcc
Q 015259 76 -LRIPVRYLR-------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE 147 (410)
Q Consensus 76 -~~~~i~~i~-------~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~ 147 (410)
.+..+.+.. +.+..|++++++++++++....+++|+|++||++++.++.++++.|+++++++++++.+...+
T Consensus 90 ~~~~~i~i~~~~~~~~~e~~~lGTa~al~~a~~~l~~~~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~ 169 (425)
T PRK00725 90 ELGEFVDLLPAQQRVDEENWYRGTADAVYQNLDIIRRYDPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPRE 169 (425)
T ss_pred CCCCeEEEeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchh
Confidence 011122221 223589999999999999643346899999999999999999999999888889888776545
Q ss_pred cccccceEEEcCCCCcEEEEecCCCCc-------cccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhh
Q 015259 148 SASQFGELVADPDTNELLHYTEKPETF-------VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSA 219 (410)
Q Consensus 148 ~~~~~~~v~~d~~~~~v~~i~ekp~~~-------~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (410)
++..||++..| ++++|..|.|||..+ .+.++++|+|+|++++| +.|.+....
T Consensus 170 ~~~~yG~v~~d-~~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~------------------- 229 (425)
T PRK00725 170 EASAFGVMAVD-ENDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAED------------------- 229 (425)
T ss_pred hcccceEEEEC-CCCCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcC-------------------
Confidence 67889999998 568999999998643 25789999999999975 566542110
Q ss_pred ccCCCCCeeeeccchhccccCCCceeEEecc-----------ceeeecCCccchhhhhHHHHhhhhhc-----CCCcccC
Q 015259 220 TRNLTTDFVRLDQDILSPLAGKKQLYTYETM-----------DFWEQIKTPGMSLKCSGLYLAQFRLT-----SPNLLAS 283 (410)
Q Consensus 220 ~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~-----------g~~~~i~t~~~~~~an~~~~~~~~~~-----~~~~~~~ 283 (410)
+...+++..|+++.+++++.+++|.+. +||.|++|+++|+++|+.++...... ...+...
T Consensus 230 ----~~~~~~~~~dii~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~ 305 (425)
T PRK00725 230 ----PNSSHDFGKDIIPKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTY 305 (425)
T ss_pred ----CCccchhhHHHHHHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccC
Confidence 011223447999999988899999875 69999999999999999987532110 0001110
Q ss_pred CCC-CCC---------cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Q 015259 284 GDG-TKN---------ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWK 353 (410)
Q Consensus 284 ~~~-~~~---------~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~ 353 (410)
... +.. .....+++|+++|.| ++|.|. +|+||++|+|+++|.|.+|+|+++|.|+++|+|.+|+|+++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~ 383 (425)
T PRK00725 306 QEQLPPAKFVFDRSGRRGMAINSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG 383 (425)
T ss_pred CCCCCCCeEeccCCCCcceEEeCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC
Confidence 000 000 011224455555555 455554 45555555555555555555555555555555555555555
Q ss_pred CEECCCcEEccC
Q 015259 354 SSIGRWSRVQAE 365 (410)
Q Consensus 354 ~~i~~~~~i~~~ 365 (410)
|.|++++.|+.+
T Consensus 384 ~~i~~~~~i~~~ 395 (425)
T PRK00725 384 CVIPEGMVIGED 395 (425)
T ss_pred CEECCCCEECCC
Confidence 555555555443
No 12
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=1.7e-45 Score=355.24 Aligned_cols=335 Identities=22% Similarity=0.359 Sum_probs=258.4
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccC---CccEE
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL---RIPVR 81 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~---~~~i~ 81 (410)
||||||| +|+||+|+|..+||||+|++|+ |||+|+|+.|.+ |+|++.+..+.+.+++.+.+... ...++
T Consensus 1 aiILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 78 (361)
T TIGR02091 1 AMVLAGG--RGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFDGFIDGFVT 78 (361)
T ss_pred CEEeCCC--CCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCccCccCCCEE
Confidence 6999999 9999999999999999999999 899999999997 78888787788888887421100 11233
Q ss_pred Eee-------CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccce
Q 015259 82 YLR-------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGE 154 (410)
Q Consensus 82 ~i~-------~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~ 154 (410)
+.. +....|++++++.+++++.....++|++++||++++.++.++++.|++.++++++++...+.+++..|++
T Consensus 79 ~~~~~~~~~~~~~~~Gt~~al~~a~~~~~~~~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~ 158 (361)
T TIGR02091 79 LLPAQQRESGTDWYQGTADAVYQNLDLIEDYDPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGV 158 (361)
T ss_pred EeCCcccCCCCccccCcHHHHHHHHHHHHhcCCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccE
Confidence 321 1235799999999999885333467999999999999999999999887777888877765456778999
Q ss_pred EEEcCCCCcEEEEecCCCCcccc-------ceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCC
Q 015259 155 LVADPDTNELLHYTEKPETFVSD-------LINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (410)
Q Consensus 155 v~~d~~~~~v~~i~ekp~~~~~~-------l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (410)
+..| ++++|..+.|||..+... ++++|+|+|+++++ +.+....... ..
T Consensus 159 v~~d-~~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~-----------------------~~ 214 (361)
T TIGR02091 159 MQVD-EDGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDP-----------------------ES 214 (361)
T ss_pred EEEC-CCCCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcC-----------------------Cc
Confidence 9998 567899999998655455 89999999999986 5554321110 01
Q ss_pred eeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhhhhhcCCCcccCCCCCCCcEE-ccCeEECCCCEEC
Q 015259 227 FVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTSPNLLASGDGTKNATI-IGDVYVHPSAKIH 305 (410)
Q Consensus 227 ~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~i~~~~~i~ 305 (410)
..++..|+++.+++++++++|..+++|.+++|+++|+++++.++....... .+... ..+ ....++.+.+.++
T Consensus 215 ~~~~~~d~l~~l~~~~~v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~i~ 287 (361)
T TIGR02091 215 SHDFGKDIIPRALEEGSVQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFD--LYDRK-----WPIYTYNEFLPPAKFVD 287 (361)
T ss_pred ccccHHHHHHHHhhcCceEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhh--ccccC-----CceecCCCCCCCceEec
Confidence 122336899999988899999999999999999999999999987543211 11110 000 0111333344444
Q ss_pred CCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECC
Q 015259 306 PTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 385 (410)
Q Consensus 306 ~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 385 (410)
+++.+. +++||++|+|+++ .|.+|+|+++|.|+++|+|.+|+|++++.|+.+++|.+ |+||+++.|++
T Consensus 288 ~~~~i~-~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~----------~ivg~~~~i~~ 355 (361)
T TIGR02091 288 SDAQVV-DSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRN----------AIIDKNVRIGE 355 (361)
T ss_pred CCCEEE-CCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEee----------eEECCCCEECC
Confidence 444443 7889999999876 88999999999999999999999999999999999987 99999999999
Q ss_pred CcEEc
Q 015259 386 EVVVT 390 (410)
Q Consensus 386 ~~~v~ 390 (410)
++.+.
T Consensus 356 ~~~i~ 360 (361)
T TIGR02091 356 GVVIG 360 (361)
T ss_pred CCEeC
Confidence 98874
No 13
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.2e-45 Score=337.56 Aligned_cols=346 Identities=22% Similarity=0.345 Sum_probs=285.4
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
.+.+|||||| .|+||.. .+||-|.|++|+||++|+|+.... +++|..+..+.+.+.+.+. ..+.|
T Consensus 2 ~~~~vILAAG--kGTRMkS---~lPKVLH~vaGkpMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~-----~~v~~ 71 (460)
T COG1207 2 SLSAVILAAG--KGTRMKS---DLPKVLHPVAGKPMLEHVIDAARALGPDDIVVVVGHGAEQVREALAER-----DDVEF 71 (460)
T ss_pred CceEEEEecC--CCccccC---CCcccchhccCccHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhccc-----cCceE
Confidence 5789999999 9999999 999999999999999999999886 5555555566766666531 15889
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.|.+++||+++++++++++.+..+.++||++||++. ...|+++++.|.+.++.++++++.. ++|..||.+..+ +
T Consensus 72 v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~--~dP~GYGRIvr~-~ 148 (460)
T COG1207 72 VLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAEL--DDPTGYGRIVRD-G 148 (460)
T ss_pred EEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEc--CCCCCcceEEEc-C
Confidence 9999999999999999999954545689999999984 4558999999998899999999988 889999999998 6
Q ss_pred CCcEEEEecCCC----CccccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKPE----TFVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp~----~~~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
++.|..|.|..+ ...-..+++|+|+|+... +++|.... +++...||| | +|++
T Consensus 149 ~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~----nnNaqgEYY------------------L-TDvI 205 (460)
T COG1207 149 NGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLS----NNNAQGEYY------------------L-TDVI 205 (460)
T ss_pred CCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhc----cccccCcEe------------------H-HHHH
Confidence 789999988654 345678999999999864 67776533 233444444 4 8888
Q ss_pred ccccCC-CceeEEeccce--eeecCCccchhhhhHHHHhhhhhcCCCcccCC---CCCCCcEEccCeEECCCCEECCCcE
Q 015259 236 SPLAGK-KQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRLTSPNLLASG---DGTKNATIIGDVYVHPSAKIHPTAK 309 (410)
Q Consensus 236 ~~l~~~-~~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~i~~~~~i~~~~~ 309 (410)
..+.+. ..+.++...++ ..-+++-.++.++.+.|.++.... ++..+ -.|.+..+.+.+.|++++.|.+++.
T Consensus 206 ~i~~~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~---~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~ 282 (460)
T COG1207 206 AIARNEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEK---LMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVI 282 (460)
T ss_pred HHHHhCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHH---HHHcCcEEeCCCeEEEcCcEEECCceEEecCcE
Confidence 877644 47888876643 556788888888888887665442 11111 1245788999999999999999999
Q ss_pred ECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 310 IGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 310 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
|.+++.||++|+||++|+|.+|.|++|+.|..+++|++|.|+++|.||++++|.++ +.|++++.||+.+.+
T Consensus 283 l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg---------~~L~~~~hIGNFVEv 353 (460)
T COG1207 283 LEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPG---------AVLGADVHIGNFVEV 353 (460)
T ss_pred EeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCc---------CcccCCCeEeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cceEEcCCcEEc
Q 015259 390 TNSIVLPNKTLN 401 (410)
Q Consensus 390 ~~~~v~~~~~v~ 401 (410)
+++.|+.|+-+.
T Consensus 354 K~a~ig~gsKa~ 365 (460)
T COG1207 354 KKATIGKGSKAG 365 (460)
T ss_pred ecccccCCcccc
Confidence 888888776543
No 14
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.9e-43 Score=350.94 Aligned_cols=340 Identities=22% Similarity=0.314 Sum_probs=268.5
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccE
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPV 80 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i 80 (410)
|++++||||||| .|+||++ ..||+|+|++|+|||+|+|+.+.+ +++++.+..+.+.+++.+. ..+
T Consensus 1 m~~~~avIlAaG--~g~Rl~~---~~pK~l~pi~g~pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~-----~~i 70 (459)
T PRK14355 1 MNNLAAIILAAG--KGTRMKS---DLVKVMHPLAGRPMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGD-----GDV 70 (459)
T ss_pred CCcceEEEEcCC--CCcccCC---CCCceeceeCCccHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccC-----Cce
Confidence 457999999999 9999985 789999999999999999999986 6777777777777777542 146
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
.++.+.+..|++++++.+++++... .++|++++||.+ .+.++.++++.|.+.+++++++..+. +++..|+.+..|
T Consensus 71 ~~~~~~~~~Gt~~al~~a~~~l~~~-~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~--~~~~~~g~v~~d 147 (459)
T PRK14355 71 SFALQEEQLGTGHAVACAAPALDGF-SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARL--ENPFGYGRIVRD 147 (459)
T ss_pred EEEecCCCCCHHHHHHHHHHHhhcc-CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCcCCEEEEc
Confidence 6766777889999999999998522 368999999984 46679999999988777878777766 456678988887
Q ss_pred CCCCcEEEEecCCCC----ccccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccc
Q 015259 159 PDTNELLHYTEKPET----FVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQD 233 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~----~~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d 233 (410)
++++|..+.|||.. ..++++++|+|+|+++. ++.+....... +...+++ .|
T Consensus 148 -~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~e~~~-~d 203 (459)
T PRK14355 148 -ADGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDN----------------------AQGEYYL-TD 203 (459)
T ss_pred -CCCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccc----------------------cCCceeH-HH
Confidence 57789999987532 13478899999999986 46565432110 1123445 79
Q ss_pred hhccccCCC-ceeEEeccce--eeecCCccchhhhhHHHHhhhhhcC----CCcccCCCCCCCcEEccCeEECCCCEECC
Q 015259 234 ILSPLAGKK-QLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRLTS----PNLLASGDGTKNATIIGDVYVHPSAKIHP 306 (410)
Q Consensus 234 ~l~~l~~~~-~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~i~~~~~i~~ 306 (410)
+++.+++++ ++++|+..++ |.+++||++|+++++.+........ ..+.. +....+.+++.|++++.|++
T Consensus 204 ~i~~l~~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~----~~~~~i~~~v~ig~~~~I~~ 279 (459)
T PRK14355 204 IVAMAAAEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLID----PETTYIDRGVVIGRDTTIYP 279 (459)
T ss_pred HHHHHHHCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC----CCceEECCCeEEcCCCEEeC
Confidence 999998775 7999999887 9999999999999886665432211 11111 12346888999999999999
Q ss_pred CcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCC
Q 015259 307 TAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDE 386 (410)
Q Consensus 307 ~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~ 386 (410)
+|.|+++++||++|.|+++|.|.+|+||++|.|+.++++.+++|++++.|++++.+..+ +.|++++.||++
T Consensus 280 ~~~I~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~---------~~i~~~~~ig~~ 350 (459)
T PRK14355 280 GVCISGDTRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPG---------TELSAHVKIGNF 350 (459)
T ss_pred CcEEeCCCEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCC---------CEeCCCCEECCC
Confidence 99999999999999999999999999999999999999999999999999999999887 777777777776
Q ss_pred cEEcceEEc
Q 015259 387 VVVTNSIVL 395 (410)
Q Consensus 387 ~~v~~~~v~ 395 (410)
+.+++++|+
T Consensus 351 ~~~~~~~ig 359 (459)
T PRK14355 351 VETKKIVMG 359 (459)
T ss_pred ccccCCEEC
Confidence 654443333
No 15
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-43 Score=337.31 Aligned_cols=354 Identities=18% Similarity=0.323 Sum_probs=278.7
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCc---
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRI--- 78 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~--- 78 (410)
..++||++|.. +.+||+|+|..+|++|||++|.|||+|+|++|.+ ++|+++.+..++.+|+++. +|..
T Consensus 23 ~rLqAIllaDs--f~trF~Plt~~~p~~LLPlaNVpmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~s--ew~~~~~ 98 (673)
T KOG1461|consen 23 HRLQAILLADS--FETRFRPLTLEKPRVLLPLANVPMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKS--EWYLPMS 98 (673)
T ss_pred cceEEEEEecc--chhcccccccCCCceEeeecCchHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhc--ccccccc
Confidence 46899999999 9999999999999999999999999999999998 9999998899999999873 4433
Q ss_pred -cEEEeeCCCCCCcHHHHHHhHHH-hcccCCCcEEEEcCCcccCCChHHHHHHHHhc-----CCceEEEEEecCcccccc
Q 015259 79 -PVRYLREDKPHGSAGALYNFRDL-IMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNY-----GGMGTILVIKVSAESASQ 151 (410)
Q Consensus 79 -~i~~i~~~~~~g~~~~l~~~~~~-l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~-----~~~~~l~~~~~~~~~~~~ 151 (410)
.+..+...+....|++++..-+. +. .++|++++||++.+.+|.++|++|+++ ++.|||++.+........
T Consensus 99 ~~v~ti~s~~~~S~GDamR~id~k~li---tgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTmv~k~~st~~~~~ 175 (673)
T KOG1461|consen 99 FIVVTICSGESRSVGDAMRDIDEKQLI---TGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTMVFKESSTRETTE 175 (673)
T ss_pred ceEEEEcCCCcCcHHHHHHHHHhccee---ecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEEEEeccccccCCc
Confidence 34444445667788888765442 22 489999999999999999999999664 357888877653111222
Q ss_pred cceEEEcCCCCcEEEEecC--CC----------------CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchh
Q 015259 152 FGELVADPDTNELLHYTEK--PE----------------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSF 213 (410)
Q Consensus 152 ~~~v~~d~~~~~v~~i~ek--p~----------------~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 213 (410)
--.+.+|+.+.+++.+.+. +. ..+.++.+++|.+||++++.+|.+.|+.
T Consensus 176 ~~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~sLF~dNFDy------------- 242 (673)
T KOG1461|consen 176 QVVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLSLFTDNFDY------------- 242 (673)
T ss_pred ceEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHHHhhhcccc-------------
Confidence 3356777778999999851 11 2468999999999999999999987643
Q ss_pred HhhhhhccCCCCCeeeeccchhcccc----CCCceeEEeccc--eeeecCCccchhhhhHHHHhhhhhcC-CCcccCCCC
Q 015259 214 EALQSATRNLTTDFVRLDQDILSPLA----GKKQLYTYETMD--FWEQIKTPGMSLKCSGLYLAQFRLTS-PNLLASGDG 286 (410)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~d~l~~l~----~~~~i~~~~~~g--~~~~i~t~~~~~~an~~~~~~~~~~~-~~~~~~~~~ 286 (410)
. .+.|+++.++ -+.+|+++.... |..++.++..|...++.+++||.++. |..-..+.
T Consensus 243 --------------q-~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~YP~Vpd~~~~~~- 306 (673)
T KOG1461|consen 243 --------------Q-TRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWTYPLVPDINFSGN- 306 (673)
T ss_pred --------------e-ehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhcccccccccCCCC-
Confidence 2 2345554433 356899998775 89999999999999999999999874 22211111
Q ss_pred CCCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCC
Q 015259 287 TKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 287 ~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 366 (410)
.+-..-..+.|-++.+.+...|.++.++.||.++.||.++.|.||+||.||.||.+|+|.+|.||+||+||+||+|.+
T Consensus 307 q~~~~~r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~-- 384 (673)
T KOG1461|consen 307 QTFSLERRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDH-- 384 (673)
T ss_pred ceeeecccccccCccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEee--
Confidence 111112335677888888888888889999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCCC
Q 015259 367 DFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQ 406 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~ 406 (410)
|+||+++.|++|+.+ ++|+++.+.+|+++...
T Consensus 385 --------aii~d~v~i~~~~~l~~g~vl~~~VVv~~~~~l 417 (673)
T KOG1461|consen 385 --------AIICDDVKIGEGAILKPGSVLGFGVVVGRNFVL 417 (673)
T ss_pred --------eEeecCcEeCCCcccCCCcEEeeeeEeCCCccc
Confidence 899999999999999 68888888888876554
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.6e-42 Score=341.35 Aligned_cols=339 Identities=21% Similarity=0.291 Sum_probs=260.5
Q ss_pred CCCCCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhccc
Q 015259 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNE 75 (410)
Q Consensus 1 ~~~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~ 75 (410)
|+.+- ++|+||||||| +|+||++ ..||+|+|++|+|||+|+|+.|.+ ++|++.+..+.+.++++.
T Consensus 1 ~~~~~-~~~~avILAaG--~gtRl~~---~~pK~llpi~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~---- 70 (481)
T PRK14358 1 MTEQT-RPLDVVILAAG--QGTRMKS---ALPKVLHPVAGRPMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG---- 70 (481)
T ss_pred CCccc-CCceEEEECCC--CCCcCCC---CCCceecEECCeeHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc----
Confidence 55544 37999999999 9999997 689999999999999999999986 677777767777777642
Q ss_pred CCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccc
Q 015259 76 LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 76 ~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (410)
..+.++.++...|++++++.+++++.. ..++|++++||.+ .+.++.++++.|+++++.+++++.+. +++..||
T Consensus 71 --~~i~~v~~~~~~Gt~~al~~~~~~l~~-~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~--~~~~~yG 145 (481)
T PRK14358 71 --SGVAFARQEQQLGTGDAFLSGASALTE-GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGEL--PDATGYG 145 (481)
T ss_pred --CCcEEecCCCcCCcHHHHHHHHHHhhC-CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEc--CCCCCce
Confidence 246777777788999999999998842 2356999999985 35679999999988888888888777 4566799
Q ss_pred eEEEcCCCCcEEEEecCCCCc----cccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeee
Q 015259 154 ELVADPDTNELLHYTEKPETF----VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVR 229 (410)
Q Consensus 154 ~v~~d~~~~~v~~i~ekp~~~----~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (410)
++..| ++++|..|.|||... .++++++|+|+|++++++.++..... .+.+.++
T Consensus 146 ~v~~d-~~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~~~~~i~~~----------------------~~~ge~~ 202 (481)
T PRK14358 146 RIVRG-ADGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPELARRIGND----------------------NKAGEYY 202 (481)
T ss_pred EEEEC-CCCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHHHHHhcCCC----------------------ccCCeEE
Confidence 99998 678999999987632 24578999999997765555432210 0113455
Q ss_pred eccchhccccCCC-ceeEEeccceeeecCCccchhhhhHH-HHhhhh-hcC--CCcccCCCCCCCcEEccCeEECCCCEE
Q 015259 230 LDQDILSPLAGKK-QLYTYETMDFWEQIKTPGMSLKCSGL-YLAQFR-LTS--PNLLASGDGTKNATIIGDVYVHPSAKI 304 (410)
Q Consensus 230 l~~d~l~~l~~~~-~i~~~~~~g~~~~i~t~~~~~~an~~-~~~~~~-~~~--~~~~~~~~~~~~~~i~~~~~i~~~~~i 304 (410)
+ .|+++.+++++ .+++|+..++|..++.-.+|+.++.. +++... ... ..... ..+....+.++++||+++.|
T Consensus 203 l-~d~i~~~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~~Ig~~~~I 279 (481)
T PRK14358 203 L-TDLLGLYRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTL--QDPGTILIEDTVTLGRDVTI 279 (481)
T ss_pred H-HHHHHHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEE--ecCCeeeccCCcEECCCCEE
Confidence 6 79999988775 69999988888877776666555532 332211 110 00000 01223445788999999999
Q ss_pred CCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEEC
Q 015259 305 HPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVE 384 (410)
Q Consensus 305 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~ 384 (410)
+++|.|.+++.||++|+|+++|.|.+|+||++|.|+++++|.+++|++++.|+.++.+..+ ++||+++.|+
T Consensus 280 ~~~~~I~~~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~---------~~Ig~~~~Ig 350 (481)
T PRK14358 280 EPGVLLRGQTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPG---------TVLGEGVHIG 350 (481)
T ss_pred eCCcEEeCCcEECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCC---------cEECCCCEEC
Confidence 9999999999999999999999999999999999999999999999999999999999866 7777777777
Q ss_pred CCcEE
Q 015259 385 DEVVV 389 (410)
Q Consensus 385 ~~~~v 389 (410)
+++.+
T Consensus 351 ~~~~i 355 (481)
T PRK14358 351 NFVET 355 (481)
T ss_pred CCEEE
Confidence 76554
No 17
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.6e-42 Score=340.40 Aligned_cols=318 Identities=18% Similarity=0.277 Sum_probs=247.3
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
.+.||||||| .|+||++ .+||+|+|++|+|||+|+|+.|.+ +++++.+..+.+.++++.. ...+.+
T Consensus 4 ~~~avILAaG--~gtRm~~---~~pK~llpi~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~----~~~~~~ 74 (482)
T PRK14352 4 PTAVIVLAAG--AGTRMRS---DTPKVLHTLAGRSMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAEL----APEVDI 74 (482)
T ss_pred CceEEEEcCC--CCCcCCC---CCCceeceeCCccHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhcc----CCccEE
Confidence 5789999999 9999997 689999999999999999999986 6666666666777777542 123556
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.++...|++++++.+++++....+++|++++||.+ ...++.++++.|++.+..++++..+. .++..|+.+..+ +
T Consensus 75 ~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~--~~p~~yg~~~~~-~ 151 (482)
T PRK14352 75 AVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTL--DDPTGYGRILRD-Q 151 (482)
T ss_pred EeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeec--CCCCCCCEEEEC-C
Confidence 667778899999999999885333467999999985 35679999999988777777777666 567789988887 5
Q ss_pred CCcEEEEecCCCCcc----ccceeeeEEEEcHHHHH-HhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKPETFV----SDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~----~~l~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
+++|..+.|||.... .+++++|+|+|++++|. .+....... +.+.+++ .|++
T Consensus 152 ~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~----------------------~~~e~~l-~d~i 208 (482)
T PRK14352 152 DGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDN----------------------AQGELYL-TDVL 208 (482)
T ss_pred CCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccc----------------------cCCcEeH-HHHH
Confidence 789999999986432 45789999999999874 444322110 0133445 8999
Q ss_pred ccccCCC-ceeEEeccceeeecCCccch------hhhhHHHHhhhhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCc
Q 015259 236 SPLAGKK-QLYTYETMDFWEQIKTPGMS------LKCSGLYLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTA 308 (410)
Q Consensus 236 ~~l~~~~-~i~~~~~~g~~~~i~t~~~~------~~an~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~ 308 (410)
+.+++++ .+++|+.+++|.++++++.| ..++..++..+......++. ++.+.+.++++||+++.|++++
T Consensus 209 ~~l~~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~----~~~~~i~~~v~ig~~~~I~~~~ 284 (482)
T PRK14352 209 AIAREAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVD----PATTWIDVDVTIGRDVVIHPGT 284 (482)
T ss_pred HHHHHCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEC----CCeEEEeCCEEECCCcEEeCCc
Confidence 9998775 79999999999999988777 34444444433322222222 2367788999999999999999
Q ss_pred EECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccC
Q 015259 309 KIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 309 ~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
.|.++++||++|+|+++|.|.+++||++|.|+. +++.+++|++++.||+++.+.++
T Consensus 285 ~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~~~Ig~~~~i~~~ 340 (482)
T PRK14352 285 QLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAGATVGPFTYLRPG 340 (482)
T ss_pred EEeecCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCCCEECCCeEecCC
Confidence 999999999999999999999999999999974 77888888888888888888765
No 18
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=6.4e-42 Score=340.41 Aligned_cols=346 Identities=17% Similarity=0.225 Sum_probs=263.3
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCcc
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~ 79 (410)
|.+.+.||||||| .|+||+. .+||+|+|++|+|||+|+++.|.. ++|++.+..+.+.+++.. ..
T Consensus 2 ~~~~~~aiILAaG--~gtR~~~---~~pK~l~~i~gkpli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~------~~ 70 (456)
T PRK14356 2 MASTTGALILAAG--KGTRMHS---DKPKVLQTLLGEPMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPD------ED 70 (456)
T ss_pred CCcceeEEEEcCC--CCccCCC---CCCceecccCCCcHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhccc------cC
Confidence 4456899999999 9999974 799999999999999999999987 666666666666666532 24
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEE
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA 157 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~ 157 (410)
+.++.++...|++++++.+++++.....++|++++||.++ ..++..+++.|. +++++++..+. .++..|+.+..
T Consensus 71 ~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~~--~~~~~~g~v~~ 146 (456)
T PRK14356 71 ARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLTL--PDPGAYGRVVR 146 (456)
T ss_pred ceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEEc--CCCCCceEEEE
Confidence 5666667778999999999998864334789999999953 456889988875 55677777776 56678998866
Q ss_pred cCCCCcEEEEecCCCC------ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeec
Q 015259 158 DPDTNELLHYTEKPET------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLD 231 (410)
Q Consensus 158 d~~~~~v~~i~ekp~~------~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (410)
+ +++|..+.|+|.. +.++++++|+|+|+++.++.+.+..... ...+.+.+
T Consensus 147 ~--~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~---------------------~~~~e~~l- 202 (456)
T PRK14356 147 R--NGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNA---------------------NKSGEYYI- 202 (456)
T ss_pred c--CCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCc---------------------ccCCcEEH-
Confidence 4 6799999988642 3467889999999999876543221100 01123445
Q ss_pred cchhccccCCC-ceeEEeccc--eeeecCCccchhhhhHHHHhhhhhc--CCCcccCCCCCCCcEEccCeEECCCCEECC
Q 015259 232 QDILSPLAGKK-QLYTYETMD--FWEQIKTPGMSLKCSGLYLAQFRLT--SPNLLASGDGTKNATIIGDVYVHPSAKIHP 306 (410)
Q Consensus 232 ~d~l~~l~~~~-~i~~~~~~g--~~~~i~t~~~~~~an~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~ 306 (410)
.++++.+++.+ .+.++...+ .|.+++||+||.+++..+..+.... ...... ..+.+..+.+++.|++++.|..
T Consensus 203 td~i~~~~~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i--~~~~~~~i~~~~~i~~~~~i~~ 280 (456)
T PRK14356 203 TDLVGLAVAEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLI--HAPESVRIGPRATIEPGAEIYG 280 (456)
T ss_pred HHHHHHHHHCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEE--eCCCcEEECCCcEECCCCEEeC
Confidence 78888887554 789988765 5799999999999887665542211 011110 0123577778888888888888
Q ss_pred CcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCC
Q 015259 307 TAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDE 386 (410)
Q Consensus 307 ~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~ 386 (410)
++.|.++++||++|+|+++|.|.+|+||++|.|+++|.|.+++|+++|.||++++|.++ ++||+++.|+++
T Consensus 281 ~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~ig~~~~ig~~ 351 (456)
T PRK14356 281 PCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPG---------AVLEEGARVGNF 351 (456)
T ss_pred CcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCC---------CEECCCCEecCC
Confidence 88888899999999999999999999999999999999999999999999999999876 778888888777
Q ss_pred cEEcceEEcCCcEE
Q 015259 387 VVVTNSIVLPNKTL 400 (410)
Q Consensus 387 ~~v~~~~v~~~~~v 400 (410)
+.+.+++|++++.+
T Consensus 352 ~~i~~~~i~~~~~i 365 (456)
T PRK14356 352 VEMKKAVLGKGAKA 365 (456)
T ss_pred ceeeeeEecCCcEe
Confidence 77766665555444
No 19
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-42 Score=310.26 Aligned_cols=359 Identities=19% Similarity=0.323 Sum_probs=246.1
Q ss_pred CCCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEeccc-chHHHHHHHHhhcccC
Q 015259 3 SSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFY-EEREFALYVSSISNEL 76 (410)
Q Consensus 3 ~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~-~~~~i~~~~~~~~~~~ 76 (410)
+|| .+|+|||+||| .|+||-.++...|||||||+|+|||+|+|.+|.+ ++|++.. ....++.++.+. +
T Consensus 5 s~~-~efqavV~a~~--ggt~~p~~~~~~pKaLLPIgn~PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~---~ 78 (433)
T KOG1462|consen 5 SPM-SEFQAVVLAGG--GGTRMPEVTSRLPKALLPIGNKPMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSN---I 78 (433)
T ss_pred cch-HHhhhheeecC--CceechhhhhhcchhhcccCCcceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcC---C
Confidence 444 57999999999 9999999999999999999999999999999998 6666655 445677777653 2
Q ss_pred Ccc-----EEEee-CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecC-----
Q 015259 77 RIP-----VRYLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVS----- 145 (410)
Q Consensus 77 ~~~-----i~~i~-~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~----- 145 (410)
.++ +.+-. .....|++++|+.....++ .+||||+.||.+++.++..+++.++..++...+++....
T Consensus 79 ~l~~~~~~v~ip~~~~~d~gtadsLr~Iy~kik---S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~~~~s~~~~ 155 (433)
T KOG1462|consen 79 DLKKRPDYVEIPTDDNSDFGTADSLRYIYSKIK---SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIGNALSEVPI 155 (433)
T ss_pred cccccccEEEeecccccccCCHHHHhhhhhhhc---cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhccccccccc
Confidence 222 22211 1336799999999999997 369999999999999999999999977665444443321
Q ss_pred ---c-ccccccceEEEcCCCCcEEEEecC-----------------CC-CccccceeeeEEEEcHHHHHHhhhccccccc
Q 015259 146 ---A-ESASQFGELVADPDTNELLHYTEK-----------------PE-TFVSDLINCGVYVFTPDIFNAIQGVSSQRKD 203 (410)
Q Consensus 146 ---~-~~~~~~~~v~~d~~~~~v~~i~ek-----------------p~-~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~ 203 (410)
+ +....+.++..+.+++|+...... |. +..++|.++++|+|+.+++++|.+..+...-
T Consensus 156 pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~l~~~~sisSf 235 (433)
T KOG1462|consen 156 PGQKGKKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDLLSEKESISSF 235 (433)
T ss_pred cCcccccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHHHhcCCcceee
Confidence 0 112234556666456666554432 11 2458899999999999999999865433322
Q ss_pred chhhhccchhHhhh--hhccCCCCCeeeeccchhcccc-----CCCceeEEe--ccceeeecCCccchhhhhH--HHHhh
Q 015259 204 RENLRRVSSFEALQ--SATRNLTTDFVRLDQDILSPLA-----GKKQLYTYE--TMDFWEQIKTPGMSLKCSG--LYLAQ 272 (410)
Q Consensus 204 ~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~d~l~~l~-----~~~~i~~~~--~~g~~~~i~t~~~~~~an~--~~~~~ 272 (410)
+....+|....+++ ++.....+....- +.+-+... ++-++++|. ..+.+.+++|+..|+++|+ .+.+-
T Consensus 236 k~~f~P~lvkkQ~q~~~~~~~~~~~~l~t-~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~eiN~~k~~~~l 314 (433)
T KOG1462|consen 236 KADFLPYLVKKQFQKNPPLKKNETSILPT-PNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEINRDKKLKKL 314 (433)
T ss_pred cccccchhhhhhhhcCCCcccccccccCC-ccccCcccccCcccceeeeEEEccCccceEEecchHHHHhhhHHHHHHHh
Confidence 33333333333332 1100000000000 11111111 112344443 4467889999999999995 22221
Q ss_pred hhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECC
Q 015259 273 FRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGW 352 (410)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~ 352 (410)
-.+ ...... +. ... +.++..++||++|+|++++.|..|+||++|.||+.++|.+|++++
T Consensus 315 ~~e--~~~~k~-------------~~---~~~---~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~ 373 (433)
T KOG1462|consen 315 CSE--AKFVKN-------------YV---KKV---ALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMD 373 (433)
T ss_pred ccc--cccccc-------------hh---hhe---eccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeec
Confidence 100 001000 00 111 334457888889999999999999999999999999999999999
Q ss_pred CCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 353 KSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 353 ~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
|++||++++|.+ |+||.+++||+|+.+.+|.|+++++|++
T Consensus 374 nV~vg~G~~Ien----------sIIg~gA~Ig~gs~L~nC~Ig~~yvVea 413 (433)
T KOG1462|consen 374 NVVVGDGVNIEN----------SIIGMGAQIGSGSKLKNCIIGPGYVVEA 413 (433)
T ss_pred CcEecCCcceec----------ceecccceecCCCeeeeeEecCCcEEcc
Confidence 999999999998 9999999999999999999999999984
No 20
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=1.3e-40 Score=330.95 Aligned_cols=337 Identities=20% Similarity=0.311 Sum_probs=256.8
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|+||||||| .|+||++ ..||+|+|++|+|||+|+++.+.+ +++++.+..+.+.+++++ + .+.++
T Consensus 1 m~aiIlAaG--~g~R~~~---~~pK~l~~i~gkpli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~----~--~i~~~ 69 (451)
T TIGR01173 1 LSVVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVIDAARALGPQKIHVVYGHGAEQVRKALAN----R--DVNWV 69 (451)
T ss_pred CeEEEEcCC--CCcccCC---CCchhhceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcC----C--CcEEE
Confidence 789999999 9999997 789999999999999999999987 667777767777777654 3 34555
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
.+....|++++++++++++.. .++|++++||.+ ...++.++++.|.+. .+++++.+. +++..|+.+..+ ++
T Consensus 70 ~~~~~~G~~~ai~~a~~~l~~--~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~--~~~~~~g~v~~d-~~ 142 (451)
T TIGR01173 70 LQAEQLGTGHAVLQALPFLPD--DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL--PDPTGYGRIIRE-ND 142 (451)
T ss_pred EcCCCCchHHHHHHHHHhcCC--CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec--CCCCCCCEEEEc-CC
Confidence 556667999999999998852 257999999984 355689999888654 356666665 456669988887 56
Q ss_pred CcEEEEecCCCCc----cccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhc
Q 015259 162 NELLHYTEKPETF----VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILS 236 (410)
Q Consensus 162 ~~v~~i~ekp~~~----~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 236 (410)
++|..+.|||... ...++++|+|+|++++ ++.+.+..... .+..+.+ .++++
T Consensus 143 g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~----------------------~~~e~~~-~~~~~ 199 (451)
T TIGR01173 143 GKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNN----------------------AQGEYYL-TDVIA 199 (451)
T ss_pred CCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhccccc----------------------ccCcEeH-HHHHH
Confidence 7899999886432 2347889999999988 45555422110 0122334 78888
Q ss_pred cccCCC-ceeEEeccce--eeecCCccchhhhhHHHHhhhhhcC--CCcccCCCCCCCcEEccCeEECCCCEECCCcEEC
Q 015259 237 PLAGKK-QLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRLTS--PNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIG 311 (410)
Q Consensus 237 ~l~~~~-~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~ 311 (410)
.+++++ .+++|+..++ |.+++|+++|..++..+..+..... ..... ..+....+.+++.||+++.|++++.|+
T Consensus 200 ~l~~~g~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~~ig~~~~i~~~~~i~ 277 (451)
T TIGR01173 200 LAVADGETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTL--RDPARFDIRGTVEIGRDVEIDPNVILE 277 (451)
T ss_pred HHHHCCCeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEE--ecCCeEEECCccEECCCCEEcCCeEEe
Confidence 888665 7999998887 8999999999888765554322211 11100 112356688899999999999999999
Q ss_pred CCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcc
Q 015259 312 PNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 391 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~ 391 (410)
++++||++|.|+++|.|.+++|+++|.|+++|.|.+++|+++|.|++++.|.++ ++|+++|.|++++.+.+
T Consensus 278 ~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~i~~~~~Ig~~~~i~~ 348 (451)
T TIGR01173 278 GKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPG---------SVLGAGVHIGNFVETKN 348 (451)
T ss_pred CceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCC---------CEECCCcEEccceeecC
Confidence 999999999999999999999999999999999999999999999999999876 67777776666655544
Q ss_pred eEEcCC
Q 015259 392 SIVLPN 397 (410)
Q Consensus 392 ~~v~~~ 397 (410)
+.|+.+
T Consensus 349 ~~ig~~ 354 (451)
T TIGR01173 349 ARIGKG 354 (451)
T ss_pred cEECCC
Confidence 444433
No 21
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-39 Score=323.52 Aligned_cols=364 Identities=18% Similarity=0.243 Sum_probs=243.0
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
+++.||||||| .|+||++ ..||+|+|++|+|||+|+++.|.+ ++|++.+..+.+.+++.. +...+.
T Consensus 4 ~~~~aiILAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~----~~~~~~ 74 (446)
T PRK14353 4 RTCLAIILAAG--EGTRMKS---SLPKVLHPVAGRPMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAK----IAPDAE 74 (446)
T ss_pred ccceEEEEcCC--CCCccCC---CCCcccCEECCchHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhc----cCCCce
Confidence 37999999999 9999985 689999999999999999999986 677777777777777654 222344
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc-c-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcC
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC-C-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i-~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~ 159 (410)
+..+....|++++++.+++++... .++|++++||.+ + ..++..+++.+ +.+++++++..+. .++..|+.+..+
T Consensus 75 ~~~~~~~~G~~~sl~~a~~~l~~~-~~~~lv~~~D~P~i~~~~l~~l~~~~-~~~~~~~i~~~~~--~~~~~~g~~~~~- 149 (446)
T PRK14353 75 IFVQKERLGTAHAVLAAREALAGG-YGDVLVLYGDTPLITAETLARLRERL-ADGADVVVLGFRA--ADPTGYGRLIVK- 149 (446)
T ss_pred EEEcCCCCCcHHHHHHHHHHHhcc-CCCEEEEeCCcccCCHHHHHHHHHhH-hcCCcEEEEEEEe--CCCCcceEEEEC-
Confidence 555667789999999999988421 368999999985 3 44578888744 4456777776665 556678887764
Q ss_pred CCCcEEEEecCCCCc----cccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccch
Q 015259 160 DTNELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDI 234 (410)
Q Consensus 160 ~~~~v~~i~ekp~~~----~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~ 234 (410)
+++|..+.|||... .+.+.++|+|+|+++.| +.+++..... ..+.+.+ .+.
T Consensus 150 -~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~----------------------~~~~~~~-~d~ 205 (446)
T PRK14353 150 -GGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDN----------------------AKGEYYL-TDI 205 (446)
T ss_pred -CCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccC----------------------CCCcEeH-HHH
Confidence 57899999987431 23678999999998664 6555322100 1122334 788
Q ss_pred hccccCCC-ceeEEecc-ceeeecCCccchhhhhHHHHhhhhhc----CCCcccCCC--------CCCCcEEccCeEECC
Q 015259 235 LSPLAGKK-QLYTYETM-DFWEQIKTPGMSLKCSGLYLAQFRLT----SPNLLASGD--------GTKNATIIGDVYVHP 300 (410)
Q Consensus 235 l~~l~~~~-~i~~~~~~-g~~~~i~t~~~~~~an~~~~~~~~~~----~~~~~~~~~--------~~~~~~i~~~~~i~~ 300 (410)
++.+++.+ +++.+..+ ++|.+|+||+||.+++..+..+.... ...++.+.. -..++.+.++++|++
T Consensus 206 ~~~l~~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~ 285 (446)
T PRK14353 206 VAIARAEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGP 285 (446)
T ss_pred HHHHHHCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECC
Confidence 88887665 69999876 57999999999999997765432110 111121110 002334444455555
Q ss_pred CCEECCCcEECC-----CcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCE-----------ECCCcEEc
Q 015259 301 SAKIHPTAKIGP-----NVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSS-----------IGRWSRVQ 363 (410)
Q Consensus 301 ~~~i~~~~~i~~-----~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~-----------i~~~~~i~ 363 (410)
++.|+++|.|++ +++||++|+||+++.|. +++||++|.|++++.+.+++|++++. ||+++.|+
T Consensus 286 ~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~Ig 365 (446)
T PRK14353 286 GVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATIGAGANIG 365 (446)
T ss_pred CCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEEcCCcEEC
Confidence 555555555543 45666666666666665 66677777777776665555555432 33333333
Q ss_pred cCCCC-----CcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 364 AEGDF-----NAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 364 ~~~~~-----~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
.+... ....+ ++||++++||.++++ ++++|+++++|..++++.-+
T Consensus 366 ~~~~~~~~~~~~~~~-~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~~ 422 (446)
T PRK14353 366 AGTITCNYDGFNKHR-TEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDAL 422 (446)
T ss_pred CceeeeccccccCCC-cEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCCE
Confidence 32110 00112 778888888888877 67788888888888887654
No 22
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-39 Score=322.26 Aligned_cols=356 Identities=16% Similarity=0.224 Sum_probs=234.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
.++||||||| .|+||++ .+||+|+|++|+|||+|+++.+.+ ++|+..+..+.+.+++++. + ..+.++
T Consensus 2 ~~~aiIlAaG--~GtRl~~---~~pK~Llpi~gkPli~~~i~~l~~~~~~i~Ivv~~~~~~i~~~~~~~---~-~~v~~~ 72 (430)
T PRK14359 2 KLSIIILAAG--KGTRMKS---SLPKVLHTICGKPMLFYILKEAFAISDDVHVVLHHQKERIKEAVLEY---F-PGVIFH 72 (430)
T ss_pred CccEEEEcCC--CCccCCC---CCCceeCEECCccHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhc---C-CceEEE
Confidence 4889999999 9999987 899999999999999999999986 6667777778888887642 1 135555
Q ss_pred eC--CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 84 RE--DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 84 ~~--~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
.+ ....|++++++.+.. ..++|++++||.++. ..+.++.+.+.++++++.+.+. +++..|+.+..+ +
T Consensus 73 ~~~~~~~~gt~~al~~~~~-----~~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~--~~~~~~g~v~~d--~ 141 (430)
T PRK14359 73 TQDLENYPGTGGALMGIEP-----KHERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL--ADPKGYGRVVIE--N 141 (430)
T ss_pred EecCccCCCcHHHHhhccc-----CCCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc--CCCccCcEEEEc--C
Confidence 43 345789999876321 147899999999642 2345555555566777777776 456678887765 5
Q ss_pred CcEEEEecCCCC----ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhcc
Q 015259 162 NELLHYTEKPET----FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (410)
Q Consensus 162 ~~v~~i~ekp~~----~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (410)
+++..+.+++.. ..+.+.++|+|+|++++|+.+.+..... .....+.+ .|+++.
T Consensus 142 g~v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~---------------------~~~~e~~l-~d~i~~ 199 (430)
T PRK14359 142 GQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQ---------------------NAQKEYYL-TDIIAL 199 (430)
T ss_pred CeEEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcc---------------------cccCceeh-hhHHHH
Confidence 789999887642 2246789999999999987654321100 00122334 788888
Q ss_pred ccCC-CceeEEecc-ceeeecCCccchhhhhHHHHhhhhhcC--CC-cc-cCCC--CCCCcEEccCeEECCCCEECCCcE
Q 015259 238 LAGK-KQLYTYETM-DFWEQIKTPGMSLKCSGLYLAQFRLTS--PN-LL-ASGD--GTKNATIIGDVYVHPSAKIHPTAK 309 (410)
Q Consensus 238 l~~~-~~i~~~~~~-g~~~~i~t~~~~~~an~~~~~~~~~~~--~~-~~-~~~~--~~~~~~i~~~~~i~~~~~i~~~~~ 309 (410)
+++. ..+.++..+ ++|.+|++|+||.+++..+..+..... .. .+ .+.. ...++.+.+++.|++++.|+++|.
T Consensus 200 l~~~g~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~ 279 (430)
T PRK14359 200 AIEKGETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSK 279 (430)
T ss_pred HHHcCCeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeE
Confidence 8765 579998876 589999999999999876654432210 00 00 0000 113556666677777777766665
Q ss_pred ECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE---------------------------eeEECCCCEECCCcEE
Q 015259 310 IGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT---------------------------NAIVGWKSSIGRWSRV 362 (410)
Q Consensus 310 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~---------------------------~~~i~~~~~i~~~~~i 362 (410)
|+ ++.||++|.|++ +.|.+|+||++|+|+++++|. +|+|+++|.||.++.+
T Consensus 280 i~-~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~i~~~~~i~d~~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 280 IE-NSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVKAGHLSYLGDCEIDEGTNIGAGTIT 357 (430)
T ss_pred EE-eeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEeccccccccccccCCEECCCCEECCCceE
Confidence 55 555555555543 444444444444444444444 4444444455554444
Q ss_pred ccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 363 QAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 363 ~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
.+.. .....+ ++||++|+||.++.+ .+++|++|++|..++++..+
T Consensus 358 ~~~~-~~~~~~-~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~ 409 (430)
T PRK14359 358 CNYD-GKKKHK-TIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKDVPKGSL 409 (430)
T ss_pred cccc-CccCcC-CEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccccCCCcE
Confidence 3211 011111 678888888888777 57889999999999988653
No 23
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.1e-39 Score=324.05 Aligned_cols=323 Identities=22% Similarity=0.308 Sum_probs=230.8
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+|+||||||| .|+||++ .+||+|+|++|+|||+|+++.|.+ +++++.+..+.+.+++.. .++.+
T Consensus 5 ~~~aiIlAaG--~gtRl~~---~~pK~l~~i~gkpli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~------~~~~~ 73 (456)
T PRK09451 5 AMSVVILAAG--KGTRMYS---DLPKVLHTLAGKPMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLAD------EPLNW 73 (456)
T ss_pred CceEEEEcCC--CCCcCCC---CCChhcceeCChhHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhcc------CCcEE
Confidence 6999999999 9999985 789999999999999999999976 666666666777777653 14566
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.+.+..|++++++.+++++.. .++|++++||.+ .+.++.++++.|.+.+ +++++.+. +++..||++..+
T Consensus 74 i~~~~~~Gt~~al~~a~~~l~~--~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~~~~--~~~~~yG~v~~~-- 145 (456)
T PRK09451 74 VLQAEQLGTGHAMQQAAPFFAD--DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLTVKL--DNPTGYGRITRE-- 145 (456)
T ss_pred EECCCCCCcHHHHHHHHHhhcc--CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEEEEc--CCCCCceEEEec--
Confidence 6677788999999999998852 368999999984 4567999988875433 44555555 556779987543
Q ss_pred CCcEEEEecCCCCc----cccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp~~~----~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
+++|..|.|||... .++++++|+|+|++++| +++++..... ..+.+.+ .|++
T Consensus 146 ~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~----------------------~~~e~~l-~d~i 202 (456)
T PRK09451 146 NGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNN----------------------AQGEYYI-TDII 202 (456)
T ss_pred CCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCcc----------------------ccCceeH-HHHH
Confidence 67999999998531 24689999999999876 4555422110 1133345 8999
Q ss_pred ccccCCC-ceeEEe------ccce--eeecCCccchhhhhHH--HHhhhhhcCCCcccCCCCCCCcEEccCeEECCCCEE
Q 015259 236 SPLAGKK-QLYTYE------TMDF--WEQIKTPGMSLKCSGL--YLAQFRLTSPNLLASGDGTKNATIIGDVYVHPSAKI 304 (410)
Q Consensus 236 ~~l~~~~-~i~~~~------~~g~--~~~i~t~~~~~~an~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i 304 (410)
+.+++++ .+++|. ..|+ |.+++++++|++++.. ++..- ..++.+ ....+.+++.+++++.|
T Consensus 203 ~~~i~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~----~~~~~p----~~~~~~~~~~ig~~~~I 274 (456)
T PRK09451 203 ALAHQEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAG----VMLRDP----ARFDLRGTLTHGRDVEI 274 (456)
T ss_pred HHHHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcC----CEEeCC----CEEEECCcEEECCCCEE
Confidence 9998774 788885 4566 6779999999998742 22110 001111 12234456667777777
Q ss_pred CCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEEC
Q 015259 305 HPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVE 384 (410)
Q Consensus 305 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~ 384 (410)
+++|.|.++++||++|.|+++|.|.+|+|+++|.|++++.|.+|+|++++.|++++.|..+ +.|++++.|+
T Consensus 275 ~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~---------~~i~~~~~ig 345 (456)
T PRK09451 275 DTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPG---------AELAEGAHVG 345 (456)
T ss_pred cCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCC---------CEECCCceec
Confidence 7777777777777777777777777777777777777777777777777777777777654 4445444444
Q ss_pred CCcEE
Q 015259 385 DEVVV 389 (410)
Q Consensus 385 ~~~~v 389 (410)
+++.+
T Consensus 346 ~~~~i 350 (456)
T PRK09451 346 NFVEM 350 (456)
T ss_pred cceee
Confidence 44443
No 24
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.2e-40 Score=289.03 Aligned_cols=230 Identities=25% Similarity=0.428 Sum_probs=206.6
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----E-EEecccchHHHHHHHHhhcccCCccEEE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----I-YLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i-~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
|++|||||| .||||+|+|...||.|+|+.+||||+|.|+.|.. | +|+++.+...+++++.++ ++|+.+++|
T Consensus 1 mKgiILAgG--~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdg-s~~gv~itY 77 (286)
T COG1209 1 MKGVILAGG--SGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDG-SDFGVDITY 77 (286)
T ss_pred CCcEEecCc--CccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCc-cccCcceEE
Confidence 789999999 9999999999999999999999999999999997 4 455666778889999886 789999999
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
..|.++.|.++|+..+++++. +++|+++.||.++..++.++++.+.++..+++++..++ .++++||++..| +++
T Consensus 78 ~~Q~~p~GlA~Av~~a~~fv~---~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V--~dP~rfGV~e~d-~~~ 151 (286)
T COG1209 78 AVQPEPDGLAHAVLIAEDFVG---DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEV--DDPSRYGVVEFD-EDG 151 (286)
T ss_pred EecCCCCcHHHHHHHHHhhcC---CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEc--CCcccceEEEEc-CCC
Confidence 999999999999999999997 58999999999986699999999988888999999999 789999999999 677
Q ss_pred cEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC
Q 015259 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242 (410)
Q Consensus 163 ~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 242 (410)
+++.+.|||..+.|+++-+|+|+|++.+|+.++....+. .+.+++ +|+++.+++++
T Consensus 152 ~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~-----------------------RGElEI-Td~i~~~i~~G 207 (286)
T COG1209 152 KVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSA-----------------------RGELEI-TDAIDLYIEKG 207 (286)
T ss_pred cEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCC-----------------------CCceEe-hHHHHHHHHcC
Confidence 999999999999999999999999999999988754332 366777 99999999887
Q ss_pred -ceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 243 -QLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 243 -~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
.+......|.|.|++|+++|++|+.....
T Consensus 208 ~~~~~~~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 208 YLVVAILIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred cEEEEEEccceEEecCChhhHHHHHHHHHH
Confidence 45566677899999999999999988766
No 25
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=9.2e-39 Score=318.06 Aligned_cols=340 Identities=22% Similarity=0.374 Sum_probs=258.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+++||||||| .|+||++ .+||+|+|++|+|||+|+|+.|.+ ++++..+..+.+.+++.. .+.+
T Consensus 2 ~~~avIlAaG--~g~Rl~~---~~pK~ll~i~Gkpli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~-------~~~~ 69 (458)
T PRK14354 2 NRYAIILAAG--KGTRMKS---KLPKVLHKVCGKPMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD-------RSEF 69 (458)
T ss_pred CceEEEEeCC--CCcccCC---CCChhhCEeCCccHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC-------CcEE
Confidence 5789999999 9999985 789999999999999999999987 666666666777777543 2445
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+.+....|++++++.+++++... .+.|++++||.+ .+.++.++++.|.+.++++++++... +++..|+.+..+ +
T Consensus 70 ~~~~~~~g~~~al~~a~~~l~~~-~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~--~~~~~~g~v~~d-~ 145 (458)
T PRK14354 70 ALQEEQLGTGHAVMQAEEFLADK-EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIA--ENPTGYGRIIRN-E 145 (458)
T ss_pred EEcCCCCCHHHHHHHHHHHhccc-CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEc--CCCCCceEEEEc-C
Confidence 55667789999999999988521 257999999975 35679999999987777778777765 455678888777 5
Q ss_pred CCcEEEEecCCCC----ccccceeeeEEEEcHH-HHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 161 TNELLHYTEKPET----FVSDLINCGVYVFTPD-IFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 161 ~~~v~~i~ekp~~----~~~~l~~~Giy~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
+++|..+.++|.. ....+.++|+|+|+++ +++.+++..... ....+.+ .|++
T Consensus 146 ~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~----------------------~~~~~~~-~d~~ 202 (458)
T PRK14354 146 NGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDN----------------------AQGEYYL-TDVI 202 (458)
T ss_pred CCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccc----------------------cCCcEeH-HHHH
Confidence 7789999987632 2346789999999997 466665432110 0122334 7888
Q ss_pred ccccCC-CceeEEeccce--eeecCCccchhhhhHHHHhhhhhc--CC--CcccCCCCCCCcEEccCeEECCCCEECCCc
Q 015259 236 SPLAGK-KQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFRLT--SP--NLLASGDGTKNATIIGDVYVHPSAKIHPTA 308 (410)
Q Consensus 236 ~~l~~~-~~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~~~~~--~~--~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~ 308 (410)
+.+++. ..+++|..+|+ |+++++++||..++..+..+.... .+ .++. +....+.+++.||+++.|++++
T Consensus 203 ~~l~~~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~----~~~~~i~~~~~ig~~~~i~~~~ 278 (458)
T PRK14354 203 EILKNEGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIID----PESTYIDADVEIGSDTVIEPGV 278 (458)
T ss_pred HHHHHCCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeC----CCeEEECCCcEECCCCEEeCCe
Confidence 888755 47999998865 557789999999887665443321 11 1122 2246788889999999999999
Q ss_pred EECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcE
Q 015259 309 KIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVV 388 (410)
Q Consensus 309 ~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~ 388 (410)
.|.+++.||++|.|++++.|.+|+|+++|.|+ ++.+.+++|+++|.|++++.|..+ ++||+++.|++++.
T Consensus 279 ~i~~~~~Ig~~~~I~~~~~i~~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~---------~~Ig~~~~i~~~~~ 348 (458)
T PRK14354 279 VIKGNTVIGEDCVIGPGSRIVDSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRPG---------SVIGEEVKIGNFVE 348 (458)
T ss_pred EEecceEECCCCEECCCcEEeccEECCCCEEE-EEEEeCCEECCCcEECCceEecCC---------CEEeCCcEECCceE
Confidence 99999999999999999999999999999998 467888999999999999888865 77788887777777
Q ss_pred EcceEEcCCcEE
Q 015259 389 VTNSIVLPNKTL 400 (410)
Q Consensus 389 v~~~~v~~~~~v 400 (410)
+.++.|++++.+
T Consensus 349 i~~~~i~~~~~i 360 (458)
T PRK14354 349 IKKSTIGEGTKV 360 (458)
T ss_pred EeeeEECCCCEe
Confidence 755555555443
No 26
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.4e-38 Score=315.77 Aligned_cols=323 Identities=23% Similarity=0.342 Sum_probs=241.2
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
|+||||||| .|+||++ .+||+|+|++|+|||+|+|+.+.+ ++|+..+..+.+.+++.. .+.++.
T Consensus 1 m~avIlA~G--~gtRl~~---~~pK~l~~v~gkpli~~~l~~l~~~~~~i~vv~~~~~~~i~~~~~~-------~~~~~~ 68 (448)
T PRK14357 1 MRALVLAAG--KGTRMKS---KIPKVLHKISGKPMINWVIDTAKKVAQKVGVVLGHEAELVKKLLPE-------WVKIFL 68 (448)
T ss_pred CeEEEECCC--CCccCCC---CCCceeeEECCeeHHHHHHHHHHhcCCcEEEEeCCCHHHHHHhccc-------ccEEEe
Confidence 689999999 9999986 789999999999999999999986 777777766777766542 245566
Q ss_pred CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 85 EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 85 ~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
+....|++++++.+++++.. .++|++++||.+ .+.++.++++.|+++++++++++++. +++..|+.+..+ ++
T Consensus 69 ~~~~~g~~~ai~~a~~~l~~--~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~--~~~~~~g~v~~d--~g 142 (448)
T PRK14357 69 QEEQLGTAHAVMCARDFIEP--GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL--EDPTGYGRIIRD--GG 142 (448)
T ss_pred cCCCCChHHHHHHHHHhcCc--CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc--CCCCCcEEEEEc--CC
Confidence 67788999999999998852 378999999984 46678999999988888889988887 567789988776 46
Q ss_pred cEEEEecCCCCc----cccceeeeEEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhcc
Q 015259 163 ELLHYTEKPETF----VSDLINCGVYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSP 237 (410)
Q Consensus 163 ~v~~i~ekp~~~----~~~l~~~Giy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~ 237 (410)
++ .+.|++... ...+.++|+|+|++++| +.++...... ....+.+ .|+++.
T Consensus 143 ~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~----------------------~~~~~~~-~d~i~~ 198 (448)
T PRK14357 143 KY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNEN----------------------AKGEYYL-TDAVNF 198 (448)
T ss_pred eE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCC----------------------CCCeEEH-HHHHHh
Confidence 77 666754322 13588999999999985 5555421110 1133445 688877
Q ss_pred ccCCCceeEEeccce--eeecCCccchhhhhHHHHhh----hhhcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEEC
Q 015259 238 LAGKKQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQ----FRLTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKIG 311 (410)
Q Consensus 238 l~~~~~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i~ 311 (410)
+ .+++.|...++ |..+++++++..+...+... +......++.+ ....+.+++.||+++.|++++.|+
T Consensus 199 ~---~~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~Ig~~~~i~~~~~I~ 271 (448)
T PRK14357 199 A---EKVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDP----NTTYIHYDVEIGMDTIIYPMTFIE 271 (448)
T ss_pred h---hheeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCC----CcEEEccceEECCCcEEcCCcEEE
Confidence 6 24788888888 56667999888776655432 11111222222 245778888899999999999998
Q ss_pred CCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc
Q 015259 312 PNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
+++.||++|+|+++|.|.+|+||++|.|. .+.+.+++|++++.|++++.|..+ ++||+++.|++++.+.
T Consensus 272 ~~~~ig~~~~I~~~~~i~~s~Ig~~~~I~-~~~v~~sii~~~~~ig~~~~i~~~---------~~ig~~~~Ig~~~~i~ 340 (448)
T PRK14357 272 GKTRIGEDCEIGPMTRIVDCEIGNNVKII-RSECEKSVIEDDVSVGPFSRLREG---------TVLKKSVKIGNFVEIK 340 (448)
T ss_pred eeeEECCCcEECCCceecccEECCCCEEe-eeEEEEEEEeCCcEECCCcEECCc---------ccccCCcEecCceeee
Confidence 88999999999999999999999999885 457778888888888888887655 5666666666555443
No 27
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.6e-37 Score=304.59 Aligned_cols=339 Identities=21% Similarity=0.374 Sum_probs=252.7
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
+.+|||||| .|+||++ .+||+|+|++|+|||+|+|+.|.+ ++|++.+..+.+.+++++. + .+.++
T Consensus 2 ~~~iIlAaG--~gsR~~~---~~pK~ll~v~gkpli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~----~-~i~~v 71 (450)
T PRK14360 2 LAVAILAAG--KGTRMKS---SLPKVLHPLGGKSLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHL----P-GLEFV 71 (450)
T ss_pred ceEEEEeCC--CCccCCC---CCChhcCEECChhHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhccc----C-CeEEE
Confidence 679999999 9999986 789999999999999999999986 5566566666777776531 1 46666
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
.+....|++++++.+++++... .+++++++||.+ .+.++.++++.|++.+++++++..+. .++..|+.+..| ++
T Consensus 72 ~~~~~~G~~~sv~~~~~~l~~~-~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d-~~ 147 (450)
T PRK14360 72 EQQPQLGTGHAVQQLLPVLKGF-EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL--PNPKGYGRVFCD-GN 147 (450)
T ss_pred EeCCcCCcHHHHHHHHHHhhcc-CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec--CCCCCccEEEEC-CC
Confidence 6677789999999999888522 357999999985 35679999999988888877776665 456679998887 67
Q ss_pred CcEEEEecCCC----CccccceeeeEEEEcHHHHHH-hhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhc
Q 015259 162 NELLHYTEKPE----TFVSDLINCGVYVFTPDIFNA-IQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILS 236 (410)
Q Consensus 162 ~~v~~i~ekp~----~~~~~l~~~Giy~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~ 236 (410)
++|..+.|||. ...+.++++|+|+|+++.|.. +++..... ....+.+ .|.++
T Consensus 148 g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~----------------------~~~e~~~-td~i~ 204 (450)
T PRK14360 148 NLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNN----------------------DQKEYYL-TDTVS 204 (450)
T ss_pred CCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccc----------------------cCCceeH-HHHHH
Confidence 89999999874 234678999999999977643 43322110 0122334 67777
Q ss_pred cccCCCceeEEeccce--eeecCCccchhhhhHHHHhhhh----hcCCCcccCCCCCCCcEEccCeEECCCCEECCCcEE
Q 015259 237 PLAGKKQLYTYETMDF--WEQIKTPGMSLKCSGLYLAQFR----LTSPNLLASGDGTKNATIIGDVYVHPSAKIHPTAKI 310 (410)
Q Consensus 237 ~l~~~~~i~~~~~~g~--~~~i~t~~~~~~an~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~i~~~~~i~~~~~i 310 (410)
.+. .+..+...++ |..+++++++..+...+..... .....++.+ ....+.+++++++++.|++++.|
T Consensus 205 ~~~---~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~----~~~~i~~~~~ig~~~~i~~~~~i 277 (450)
T PRK14360 205 LLD---PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDP----ASCTISETVELGPDVIIEPQTHL 277 (450)
T ss_pred HHh---hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecC----CeEEEeCCEEECCCCEECCCCEE
Confidence 663 2455656655 4559999999888877654322 221222222 13457788899999999999999
Q ss_pred CCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc
Q 015259 311 GPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 311 ~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
.+++.||++|.|++++.|.+|+|+++|.|+ ++.+.+++|+++|.|++++.|.++ ++||++|.|++++.+.
T Consensus 278 ~~~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig~~~~I~~~~~I~~~---------~~Ig~~~~Ig~~~~i~ 347 (450)
T PRK14360 278 RGNTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIGDGVKIGPYAHLRPE---------AQIGSNCRIGNFVEIK 347 (450)
T ss_pred eCCcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeeccccCCcEECCCCEECCC---------CEEeCceEECCCEEEe
Confidence 989999999999999999999999999985 567788888888888888888765 7788888887777776
Q ss_pred ceEEcCCcEEc
Q 015259 391 NSIVLPNKTLN 401 (410)
Q Consensus 391 ~~~v~~~~~v~ 401 (410)
+++|++++.|.
T Consensus 348 ~~~i~~~~~i~ 358 (450)
T PRK14360 348 KSQLGEGSKVN 358 (450)
T ss_pred ccccCCCcEec
Confidence 65555555443
No 28
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=4.3e-37 Score=285.31 Aligned_cols=234 Identities=18% Similarity=0.250 Sum_probs=191.0
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhc-------
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS------- 73 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~------- 73 (410)
|.+|+||||||| .|+||+|+|..+||||+||+|+|+|+|+|+.+.. |+|++.+..+.+.+|+....
T Consensus 1 ~~~mkavILAaG--~GTRL~PlT~~~PKpLvpV~gkPiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~ 78 (297)
T TIGR01105 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLE 78 (297)
T ss_pred CCceEEEEECCC--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHH
Confidence 457999999999 9999999999999999999999999999999987 77777777788888886421
Q ss_pred --------------ccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--------CChHHHHHHHH
Q 015259 74 --------------NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHR 131 (410)
Q Consensus 74 --------------~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--------~~l~~~l~~~~ 131 (410)
..++.+++++.|.+..|++++++++++++. +++|++++||.+++ .++.++++.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~lGtg~Av~~a~~~l~---~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~ 155 (297)
T TIGR01105 79 QRVKRQLLAEVQSICPPGVTIMNVRQAQPLGLGHSILCARPVVG---DNPFVVVLPDIIIDDATADPLRYNLAAMIARFN 155 (297)
T ss_pred HhcchhhhhhhhhcCCCCceEEEeeCCCcCchHHHHHHHHHHhC---CCCEEEEECCeeccccccccchhHHHHHHHHHH
Confidence 024567888889999999999999999996 36899999999886 48999999997
Q ss_pred hcCCceEEEEEecCcccccccceEEEcC---CCCc---EEEEecCCCCc---cccceeeeEEEEcHHHHHHhhhcccccc
Q 015259 132 NYGGMGTILVIKVSAESASQFGELVADP---DTNE---LLHYTEKPETF---VSDLINCGVYVFTPDIFNAIQGVSSQRK 202 (410)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~~~~v~~d~---~~~~---v~~i~ekp~~~---~~~l~~~Giy~~~~~~~~~l~~~~~~~~ 202 (410)
++++.++++.... +++.+||++..+. ++++ |..+.|||..+ .++++++|+|+|++++|+.+......
T Consensus 156 ~~~~~~~~~~~~~--~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~-- 231 (297)
T TIGR01105 156 ETGRSQVLAKRMP--GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWAELERTEPG-- 231 (297)
T ss_pred HhCCcEEEEEEcC--CCCccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHHHHHHHhcCCCC--
Confidence 7666654443332 4578999998831 2454 58888998643 47899999999999999988653211
Q ss_pred cchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 203 DRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..+.+++ .|+++.++++++++++...|+|+|+|+|++|++||..+.
T Consensus 232 ---------------------~~ge~~l-td~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~~ 277 (297)
T TIGR01105 232 ---------------------AWGRIQL-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred ---------------------CCCeeeH-HHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHHH
Confidence 1134456 799999999899999999999999999999999998874
No 29
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=3.6e-36 Score=276.51 Aligned_cols=247 Identities=53% Similarity=1.005 Sum_probs=199.9
Q ss_pred EEEEecCCCC--CCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 11 AVIMVGGPTK--GTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 11 aiIlaaG~~~--g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
||||||| . |+||+|+|..+||||+|++|+|||+|+|+++.+ ++|++.+..+.+.+|+++..+.++..+.+
T Consensus 1 ~iIla~G--~~~GtRl~plt~~~PK~llpv~g~plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~i~~ 78 (257)
T cd06428 1 AVILVGG--PQKGTRFRPLSLDVPKPLFPVAGKPMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQQEFNVPIRY 78 (257)
T ss_pred CEEEccC--CCCCcccCCccCCCCcccCeECCeeHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcccccCceEEE
Confidence 6899998 6 999999999999999999999999999999874 77888888889999998754456667777
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
+.+.+..|++++++.+++++....+++|+|++||++++.++.++++.|+++++++++++++.+.++...||++..|.+++
T Consensus 79 ~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~g 158 (257)
T cd06428 79 LQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPSTG 158 (257)
T ss_pred ecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCCC
Confidence 77777899999999999998533346899999999999999999999998888899888876545677899988873357
Q ss_pred cEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhh-ccCCCCCeeeeccchhccccCC
Q 015259 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSA-TRNLTTDFVRLDQDILSPLAGK 241 (410)
Q Consensus 163 ~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~d~l~~l~~~ 241 (410)
+|..+.|||....++++++|+|+|++++|+.+.+...... .++..+ .. .++...+++++..|+++.++++
T Consensus 159 ~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i~~~~~~~~-----~e~~~~----~~~~~~~~~~~~~~~~d~~~~l~~~ 229 (257)
T cd06428 159 EVLHYVEKPETFVSDLINCGVYLFSPEIFDTIKKAFQSRQ-----QEAQLG----DDNNREGRAEVIRLEQDVLTPLAGS 229 (257)
T ss_pred eEEEEEeCCCCcccceEEEEEEEECHHHHHHHhhhccccc-----cccccc----cccccccccceeeehhhhhhHHhcc
Confidence 9999999998777889999999999999988875332110 011000 00 0000124566767999999988
Q ss_pred CceeEEeccceeeecCCccchhhhhHH
Q 015259 242 KQLYTYETMDFWEQIKTPGMSLKCSGL 268 (410)
Q Consensus 242 ~~i~~~~~~g~~~~i~t~~~~~~an~~ 268 (410)
+.+++|+++|+|.+|+|+++|+++|+.
T Consensus 230 ~~v~~~~~~g~w~dig~~~~~~~a~~~ 256 (257)
T cd06428 230 GKLYVYKTDDFWSQIKTAGSAIYANRL 256 (257)
T ss_pred CCEEEecCCCeeecCCCHHHHHhHhhc
Confidence 899999999999999999999999975
No 30
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=6.9e-36 Score=276.55 Aligned_cols=232 Identities=19% Similarity=0.309 Sum_probs=197.1
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEE-ecccchHHHHHHHHhhcccCCcc
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYL-VGFYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~v-v~~~~~~~i~~~~~~~~~~~~~~ 79 (410)
|+.|+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+.|.. |++ ++++..+.+.++++++ ++|+++
T Consensus 1 m~~~kaIILAgG--~GtRL~PlT~~~pK~Llpv~gkPmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~g-~~~g~~ 77 (292)
T PRK15480 1 MKTRKGIILAGG--SGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDG-SQWGLN 77 (292)
T ss_pred CCceEEEEECCC--cccccCcccCCCCceEeEECCEEHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcCc-cccCce
Confidence 467999999999 9999999999999999999999999999999987 554 4556667889998875 568999
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
+.+..+..+.|+++++..+++++. .++++++.||.++ +.++.++++.|.+.+++++++..++ .++.+||++..|
T Consensus 78 i~y~~q~~~~Gta~Al~~a~~~i~---~~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v--~~p~~yGvv~~d 152 (292)
T PRK15480 78 LQYKVQPSPDGLAQAFIIGEEFIG---GDDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHV--NDPERYGVVEFD 152 (292)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEc--CCcccCcEEEEC
Confidence 999988889999999999999995 2568888999764 8899999999988778888888877 677889999998
Q ss_pred CCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
++++|..+.|||..+.++++++|+|+|++++++.++..... ..+.+++ +|+++.+
T Consensus 153 -~~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~~~~~~~~-----------------------~~ge~~i-td~~~~~ 207 (292)
T PRK15480 153 -QNGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEMAKNLKPS-----------------------ARGELEI-TDINRIY 207 (292)
T ss_pred -CCCcEEEEEECCCCCCCCEEEEEEEEEChHHHHHHhhcCCC-----------------------CCCeeEh-HHHHHHH
Confidence 67899999999988889999999999999999888653211 1244567 8999988
Q ss_pred cCCCceeE-Eeccc-eeeecCCccchhhhhHHHH
Q 015259 239 AGKKQLYT-YETMD-FWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 239 ~~~~~i~~-~~~~g-~~~~i~t~~~~~~an~~~~ 270 (410)
++++.+.. +...| .|.|+||+++|.+|+..+.
T Consensus 208 l~~g~~~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 208 MEQGRLSVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred HhcCCeEEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 88876644 45567 4999999999999998776
No 31
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=5.3e-36 Score=271.49 Aligned_cols=228 Identities=39% Similarity=0.717 Sum_probs=193.6
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|++|||||| .|+||+|+|...||+|+|++|+|||+|+++.+.+ ++|++.+..+.+.+++.+....++..+.+.
T Consensus 1 m~~iIlAaG--~g~R~~~lt~~~pK~llpv~g~pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~~~~~~~~i~~~ 78 (233)
T cd06425 1 MKALILVGG--YGTRLRPLTLTVPKPLVEFCNKPMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEYEKKLGIKITFS 78 (233)
T ss_pred CcEEEecCC--CccccCccccCCCCccCeECCcchHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcccccCCeEEEec
Confidence 689999999 9999999999999999999999999999999996 777777777888888876433455566666
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~ 163 (410)
.+.+..|++++++.+++++... .++|++++||++++.++.++++.|+++++++++++.+. +++..||++..+.++++
T Consensus 79 ~~~~~~G~~~al~~a~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d~~~~~ 155 (233)
T cd06425 79 IETEPLGTAGPLALARDLLGDD-DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKV--EDPSKYGVVVHDENTGR 155 (233)
T ss_pred cCCCCCccHHHHHHHHHHhccC-CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEc--CCccccCeEEEcCCCCE
Confidence 5677899999999999998632 36799999999999999999999999889999998876 45678999998832689
Q ss_pred EEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCc
Q 015259 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243 (410)
Q Consensus 164 v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~ 243 (410)
|..+.|||....++++++|+|+|++++|+.+... ..++..++++.++++++
T Consensus 156 v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~-----------------------------~~~~~~~~~~~l~~~~~ 206 (233)
T cd06425 156 IERFVEKPKVFVGNKINAGIYILNPSVLDRIPLR-----------------------------PTSIEKEIFPKMASEGQ 206 (233)
T ss_pred EEEEEECCCCCCCCEEEEEEEEECHHHHHhcccC-----------------------------cccchhhhHHHHHhcCC
Confidence 9999999877678899999999999999887641 11233678888888889
Q ss_pred eeEEeccceeeecCCccchhhhhHHHH
Q 015259 244 LYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 244 i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
+++|+.+|+|.+++|+++|++|++.++
T Consensus 207 v~~~~~~g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 207 LYAYELPGFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred EEEEeeCCEEEcCCCHHHHHHHHHHhC
Confidence 999999999999999999999997653
No 32
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=2.8e-35 Score=273.96 Aligned_cols=234 Identities=19% Similarity=0.262 Sum_probs=191.6
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhc-------
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS------- 73 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~------- 73 (410)
|.+|+||||||| .|+||+|+|..+||||+||+|+|+|+|+|+++.+ |+|++++..+.+.+|+...+
T Consensus 1 ~~~mkavIlAaG--~GtRl~PlT~~~PK~llpi~gkpiI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~ 78 (297)
T PRK10122 1 MTNLKAVIPVAG--LGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLE 78 (297)
T ss_pred CCceEEEEECCc--CCcccCcccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHh
Confidence 468999999999 9999999999999999999999999999999997 78888888888888886311
Q ss_pred --------------ccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--------CChHHHHHHHH
Q 015259 74 --------------NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHR 131 (410)
Q Consensus 74 --------------~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--------~~l~~~l~~~~ 131 (410)
..++.++.++.|.+..|++++++++++++. +++|++++||.+++ .++.++++.|.
T Consensus 79 ~~~k~~~l~~~~~~~~~~~~i~~~~q~~~lGtg~al~~a~~~l~---~~~fvvi~gD~l~~~~~~~~~~~dl~~li~~h~ 155 (297)
T PRK10122 79 QRVKRQLLAEVQSICPPGVTIMNVRQGQPLGLGHSILCARPAIG---DNPFVVVLPDVVIDDASADPLRYNLAAMIARFN 155 (297)
T ss_pred hcchhhhHHhhhhccCCCceEEEeecCCcCchHHHHHHHHHHcC---CCCEEEEECCeeccCccccccchhHHHHHHHHH
Confidence 013456788888889999999999999995 36799999999875 47999999998
Q ss_pred hcCCceEEEEEecCcccccccceEEEcC---CCC---cEEEEecCCCCc---cccceeeeEEEEcHHHHHHhhhcccccc
Q 015259 132 NYGGMGTILVIKVSAESASQFGELVADP---DTN---ELLHYTEKPETF---VSDLINCGVYVFTPDIFNAIQGVSSQRK 202 (410)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~~~~v~~d~---~~~---~v~~i~ekp~~~---~~~l~~~Giy~~~~~~~~~l~~~~~~~~ 202 (410)
+.+++++++. ... ++...||++..+. +++ +|..+.|||..+ .++++++|+|+|++++|+.+.+....
T Consensus 156 ~~~~~~~~~~-~~~-~~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~i~~~l~~~~~~-- 231 (297)
T PRK10122 156 ETGRSQVLAK-RMP-GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSADIWPELERTEPG-- 231 (297)
T ss_pred HhCCcEEEEE-ECC-CCCCCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHHHHHHHHhCCCC--
Confidence 8776644443 332 4678899998851 234 688999998644 37899999999999999988652211
Q ss_pred cchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 203 DRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..+.+.+ .|+++.+++++++++|.++|+|+|+|+|++|++++..+.
T Consensus 232 ---------------------~~~e~~l-td~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~ 277 (297)
T PRK10122 232 ---------------------AWGRIQL-TDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYG 277 (297)
T ss_pred ---------------------CCCeeeH-HHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHH
Confidence 1133445 799999998899999999999999999999999999883
No 33
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=2.2e-35 Score=270.26 Aligned_cols=233 Identities=32% Similarity=0.567 Sum_probs=192.8
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
|||||||| +|+||+|+|...||||+|++|+ |||+|+|++|.+ ++|++.+..+.+.+++++. ..++.++.+
T Consensus 1 kavIla~G--~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~-~~~~~~i~~ 77 (248)
T PF00483_consen 1 KAVILAGG--KGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSG-YKFGVKIEY 77 (248)
T ss_dssp EEEEEEES--CCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTS-GGGTEEEEE
T ss_pred CEEEECCC--CCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeeccccccccccccc-cccccccee
Confidence 79999999 9999999999999999999999 999999999997 5566667788899999874 456778999
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccC-CCcEEEEcCCcccCCChHHHHHHHHhcCCc--eEEEEEecCcccccccceEEEcC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDN-PSHIFLLNCDVCCSFPLPEMLDAHRNYGGM--GTILVIKVSAESASQFGELVADP 159 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~-~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~--~~l~~~~~~~~~~~~~~~v~~d~ 159 (410)
+.+....|++++|+.+++++.... +++|++++||++++.++.++++.|++++++ +++...+. +++..||++..|
T Consensus 78 i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d- 154 (248)
T PF00483_consen 78 IVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV--EDPSRYGVVEVD- 154 (248)
T ss_dssp EEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES--SGGGGSEEEEEE-
T ss_pred eecccccchhHHHHHHHHHhhhccccceEEEEeccccccchhhhHHHhhhccccccccccccccc--cccccceeeeec-
Confidence 888888999999999999997432 245999999999999999999999998874 45444444 678889999999
Q ss_pred CCCcEEEEecCCCCcc-ccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 160 DTNELLHYTEKPETFV-SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 160 ~~~~v~~i~ekp~~~~-~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
++++|..|.|||.... +.++++|+|+|++++|+.+.+..... +.....+ .|+++.+
T Consensus 155 ~~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~----------------------~~~~~~l-~d~i~~~ 211 (248)
T PF00483_consen 155 EDGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKEN----------------------ARGEDFL-TDAIPKL 211 (248)
T ss_dssp TTSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTC----------------------TTSSHHH-HHHHHHH
T ss_pred cceeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhcc----------------------chhhhHH-HHHHHHH
Confidence 6789999999998766 88999999999999998884311110 1122223 8899999
Q ss_pred cCCC-ceeEEeccc--eeeecCCccchhhhhHHHHh
Q 015259 239 AGKK-QLYTYETMD--FWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 239 ~~~~-~i~~~~~~g--~~~~i~t~~~~~~an~~~~~ 271 (410)
++++ .+.++...+ +|.|||||++|++|++.+++
T Consensus 212 ~~~~~~~~~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 212 LEQGKKVYAFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp HHTTCEEEEEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred HHcCCceEEEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 8776 566778888 79999999999999998764
No 34
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=1.5e-34 Score=263.24 Aligned_cols=228 Identities=22% Similarity=0.316 Sum_probs=189.9
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEec-ccchHHHHHHHHhhcccCCccEEE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~-~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+++.+ +++++ ++..+.+.++++.. +.|+.++.+
T Consensus 1 m~~iIlAaG--~gtRl~plt~~~pK~llpv~~~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~~-~~~~~~i~~ 77 (240)
T cd02538 1 MKGIILAGG--SGTRLYPLTKVVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGDG-SDLGIRITY 77 (240)
T ss_pred CeEEEEcCc--CcccCCccccCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhcc-cccCceEEE
Confidence 689999999 9999999999999999999999999999999996 55554 44557888888764 467777877
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
..+....|++++++.++++++ .++|++++||.++ +.++.++++.|.+.++++++++.+. .++..||++..| ++
T Consensus 78 ~~~~~~~G~~~al~~a~~~~~---~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d-~~ 151 (240)
T cd02538 78 AVQPKPGGLAQAFIIGEEFIG---DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV--NDPERYGVVEFD-EN 151 (240)
T ss_pred eeCCCCCCHHHHHHHHHHhcC---CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC--CchhcCceEEec-CC
Confidence 777778899999999999986 3679999999875 6679999999988788888888877 456689999998 67
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (410)
++|..+.|||....+.++++|+|+|++++|+.+.+.... ..+.+.+ .|+++.++++
T Consensus 152 g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~~~~~-----------------------~~~~~~l-~d~~~~l~~~ 207 (240)
T cd02538 152 GRVLSIEEKPKKPKSNYAVTGLYFYDNDVFEIAKQLKPS-----------------------ARGELEI-TDVNNEYLEK 207 (240)
T ss_pred CcEEEEEECCCCCCCCeEEEEEEEECHHHHHHHHhcCCC-----------------------CCCeEEh-HHHHHHHHHh
Confidence 799999999987778899999999999999888643211 0123445 7999999888
Q ss_pred CceeEEecc--ceeeecCCccchhhhhHHH
Q 015259 242 KQLYTYETM--DFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 242 ~~i~~~~~~--g~~~~i~t~~~~~~an~~~ 269 (410)
+++.++.+. |+|.+|+||++|.++++.+
T Consensus 208 g~~~~~~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 208 GKLSVELLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred CCeEEEEeCCCcEEEeCCCHHHHHHHHHHH
Confidence 877777665 9999999999999999865
No 35
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=1.7e-34 Score=266.94 Aligned_cols=229 Identities=19% Similarity=0.303 Sum_probs=192.6
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEe-cccchHHHHHHHHhhcccCCccEEEe
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLV-GFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv-~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+.+.. |+|+ +++..+.+.+++..+ +.|++++.++
T Consensus 1 kaIILAgG--~GtRL~plT~~~pK~Llpv~gkPmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~g-~~~g~~i~~~ 77 (286)
T TIGR01207 1 KGIILAGG--SGTRLYPITRAVSKQLLPIYDKPMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGDG-SQWGVNLSYA 77 (286)
T ss_pred CEEEECCC--CCccCCcccCCCCceeeEECCEEhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhccc-cccCceEEEE
Confidence 58999999 9999999999999999999999999999999987 5544 456667888888764 5688899999
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc-cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC-CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i-~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
.+..+.|++++++.+++++. .++++++.||.+ ++.++.++++.|.+.++++++++.++ +++.+||++..| +++
T Consensus 78 ~q~~~~Gta~al~~a~~~l~---~~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v--~~p~~yGvv~~d-~~g 151 (286)
T TIGR01207 78 VQPSPDGLAQAFIIGEDFIG---GDPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQV--SDPERYGVVEFD-SNG 151 (286)
T ss_pred EccCCCCHHHHHHHHHHHhC---CCCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEc--cCHHHCceEEEC-CCC
Confidence 88889999999999999996 367888899976 57889999999988778888888887 567889999998 678
Q ss_pred cEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC
Q 015259 163 ELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK 242 (410)
Q Consensus 163 ~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~ 242 (410)
+|..+.|||..+.++++++|+|+|++++++.+...... ..+.+++ .|+++.+++++
T Consensus 152 ~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~~l~~~~~~-----------------------~~ge~ei-tdv~~~~l~~g 207 (286)
T TIGR01207 152 RAISIEEKPAQPKSNYAVTGLYFYDNRVVEIARQLKPS-----------------------ARGELEI-TDLNRVYLEEG 207 (286)
T ss_pred eEEEEEECCCCCCCCEEEEEEEEEchHHHHHHhhcCCC-----------------------CCCcEeH-HHHHHHHHHcC
Confidence 99999999988889999999999999999888653211 1133445 79999998887
Q ss_pred ceeEEec-cce-eeecCCccchhhhhHHHHh
Q 015259 243 QLYTYET-MDF-WEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 243 ~i~~~~~-~g~-~~~i~t~~~~~~an~~~~~ 271 (410)
.+..+.. .|+ |.|++|+++|++|+..+..
T Consensus 208 ~l~v~~~~~g~~W~DiGt~~~l~~A~~~~~~ 238 (286)
T TIGR01207 208 RLSVELLGRGYAWLDTGTHDSLLEASNFIQT 238 (286)
T ss_pred CcEEEEecCCCEEEeCCCHHHHHHHHHHHHH
Confidence 6655554 576 9999999999999977643
No 36
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=5.6e-33 Score=254.17 Aligned_cols=221 Identities=23% Similarity=0.400 Sum_probs=182.6
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc---cCCc---
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---ELRI--- 78 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~---~~~~--- 78 (410)
+||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ |+|++++..+.+.+++++... .+..
T Consensus 1 kavilaaG--~gtRl~~~t~~~pK~llpv~g~pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 78 (254)
T TIGR02623 1 KAVILAGG--LGTRISEETHLRPKPMVEIGGKPILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMA 78 (254)
T ss_pred CEEEEcCc--cccccCccccCCCcceeEECCEEHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEec
Confidence 58999999 9999999999999999999999999999999987 778887778888888875311 1111
Q ss_pred --------------cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEec
Q 015259 79 --------------PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKV 144 (410)
Q Consensus 79 --------------~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~ 144 (410)
.+++..+.+..|++++++++++++. .++|++++||++++.++.++++.|.+.+++++++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~---~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~-- 153 (254)
T TIGR02623 79 DNTMEVHHKRVEPWRVTLVDTGESTQTGGRLKRVREYLD---DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAV-- 153 (254)
T ss_pred ccccccccccCCccceeeeecCCcCCcHHHHHHHHHhcC---CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEe--
Confidence 1233444566899999999999985 478999999999999999999999988888887654
Q ss_pred CcccccccceEEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCC
Q 015259 145 SAESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLT 224 (410)
Q Consensus 145 ~~~~~~~~~~v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (410)
.++..||++..| + ++|..|.|||... ++++++|+|+|++++|+.+.+.
T Consensus 154 --~~~~~yG~v~~d-~-~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~~l~~~--------------------------- 201 (254)
T TIGR02623 154 --QPPGRFGALDLE-G-EQVTSFQEKPLGD-GGWINGGFFVLNPSVLDLIDGD--------------------------- 201 (254)
T ss_pred --cCCCcccEEEEC-C-CeEEEEEeCCCCC-CCeEEEEEEEEcHHHHhhcccc---------------------------
Confidence 345679999887 4 5899999998543 6789999999999999877531
Q ss_pred CCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 225 TDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 225 ~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
..++..|+++.+++++++++|..+|+|.+|+||++|.+++..+.+
T Consensus 202 --~~~~~~d~i~~l~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~ 246 (254)
T TIGR02623 202 --ATVWEQEPLETLAQRGELSAYEHSGFWQPMDTLRDKNYLEELWES 246 (254)
T ss_pred --CchhhhhHHHHHHhCCCEEEEeCCCEEecCCchHHHHHHHHHHHc
Confidence 112337899999988899999999999999999999999887754
No 37
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=1.4e-32 Score=249.70 Aligned_cols=229 Identities=26% Similarity=0.416 Sum_probs=192.3
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|+||||||| .|+||+|+|...||+|+|++|+|||+|+++++.+ ++|++.+..+.+.+++++. .+|+.++.++
T Consensus 1 m~avIlAaG--~g~Rl~plt~~~pK~l~~i~g~~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~-~~~~~~i~~~ 77 (236)
T cd04189 1 MKGLILAGG--KGTRLRPLTYTRPKQLIPVAGKPIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDG-SRFGVRITYI 77 (236)
T ss_pred CeEEEECCC--ccccccccccCCCceeeEECCcchHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcch-hhcCCeEEEE
Confidence 789999999 9999999999999999999999999999999986 7777777778888888764 3577778887
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~ 163 (410)
.+....|++++++.+++++. .+++++++||.+++.++.++++.|.+.+.++++++.+. .++..|+++..| +++
T Consensus 78 ~~~~~~g~~~sl~~a~~~i~---~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d--~~~ 150 (236)
T cd04189 78 LQEEPLGLAHAVLAARDFLG---DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEV--EDPRRFGVAVVD--DGR 150 (236)
T ss_pred ECCCCCChHHHHHHHHHhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEEC--CCcccceEEEEc--CCe
Confidence 77778899999999999885 36899999999999999999999988888888888876 455678888887 358
Q ss_pred EEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC-
Q 015259 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK- 242 (410)
Q Consensus 164 v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~- 242 (410)
|..+.+||....+.+.++|+|+|++++++.+...... ..+.+.+ .|+++.+++++
T Consensus 151 v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~-----------------------~~~~~~~-~d~~~~~i~~g~ 206 (236)
T cd04189 151 IVRLVEKPKEPPSNLALVGVYAFTPAIFDAISRLKPS-----------------------WRGELEI-TDAIQWLIDRGR 206 (236)
T ss_pred EEEEEECCCCCCCCEEEEEEEEeCHHHHHHHHhcCCC-----------------------CCCeEEH-HHHHHHHHHcCC
Confidence 9999999876667889999999999999877532111 0123445 78999888654
Q ss_pred ceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 243 QLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 243 ~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
.+.+++.+++|.+|+|+++|.++++.++.
T Consensus 207 ~v~~~~~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 207 RVGYSIVTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred cEEEEEcCceEEeCCCHHHHHHHHHHHHh
Confidence 69999999999999999999999988764
No 38
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=1.6e-32 Score=255.77 Aligned_cols=231 Identities=22% Similarity=0.293 Sum_probs=190.3
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccC-----
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNEL----- 76 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~----- 76 (410)
+.|+|||+||| .|+||+|+|..+||+|+|++|+|+|+|+|+.+.+ |+|++.+..+.+.++++.. ..|
T Consensus 7 ~~~~aiIlaaG--~g~Rl~~~t~~~pK~l~pv~g~pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-~~~~~~l~ 83 (302)
T PRK13389 7 KVKKAVIPVAG--LGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTS-FELEAMLE 83 (302)
T ss_pred cceEEEEECCc--CCccCCCccCCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccc-hhhhhhhh
Confidence 45899999999 9999999999999999999999999999999987 7788888888899998753 122
Q ss_pred -----------------CccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--------CChHHHHHHHH
Q 015259 77 -----------------RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--------FPLPEMLDAHR 131 (410)
Q Consensus 77 -----------------~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--------~~l~~~l~~~~ 131 (410)
+..+.++.+.+..|++++++++++++. +++|+|++||.+++ .++.++++.|.
T Consensus 84 ~~~~~~~~~e~~~i~~~~~~i~~~~q~~~~Gtg~Av~~a~~~~~---~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~ 160 (302)
T PRK13389 84 KRVKRQLLDEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVG---DEPVAVILPDVILDEYESDLSQDNLAEMIRRFD 160 (302)
T ss_pred hhhhhHHHHhhhhccccCceEEEeecCCCCChHHHHHHHHHHcC---CCCEEEEeCcceecccccccccccHHHHHHHHH
Confidence 124556667778999999999999885 37899999999874 68999999998
Q ss_pred hcCCceEEEEEecCcccccccceEEEcC------CCCcEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhccccccc
Q 015259 132 NYGGMGTILVIKVSAESASQFGELVADP------DTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKD 203 (410)
Q Consensus 132 ~~~~~~~l~~~~~~~~~~~~~~~v~~d~------~~~~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~ 203 (410)
+.+++ ++++.+. +++..||++..+. ++++|..+.|||. ...++++++|+|+|++++|+.+......
T Consensus 161 ~~~~~-tl~~~~~--~~~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~~il~~l~~~~~~--- 234 (302)
T PRK13389 161 ETGHS-QIMVEPV--ADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSADIWPLLAKTPPG--- 234 (302)
T ss_pred hcCCC-EEEEEEc--ccCCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECHHHHHHHHhCCCC---
Confidence 77765 6777666 6677899998762 1347999999986 3457899999999999999888653211
Q ss_pred chhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 204 RENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..+.+.+ .|+++.+++++++++|...|+|.||+||++|++|+..+.
T Consensus 235 --------------------~~~e~~l-~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 235 --------------------AGDEIQL-TDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred --------------------CCCeeeH-HHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 1133445 899999998889999999999999999999999998874
No 39
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.7e-32 Score=246.60 Aligned_cols=213 Identities=18% Similarity=0.296 Sum_probs=179.9
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
+||||||| .|+||+|+|..+||||+|++|+|||+|+|++|.+ |+|++.+..+.+.+++++ +.|+..+.+..
T Consensus 1 kaiIlaaG--~g~Rl~plt~~~pK~llpi~g~~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~--~~~~~~i~~~~ 76 (221)
T cd06422 1 KAMILAAG--LGTRMRPLTDTRPKPLVPVAGKPLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGD--SRFGLRITISD 76 (221)
T ss_pred CEEEEcCC--CCCccccccCCCCCceeeECCEEHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhc--ccCCceEEEec
Confidence 58999999 9999999999999999999999999999999997 778888888889998876 45777787776
Q ss_pred CC-CCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHh--cCCceEEEEEecCcccccccceEEEcCCC
Q 015259 85 ED-KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRN--YGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 85 ~~-~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
+. +..|++++++.+++++. .++|++++||++++.++.++++.|.+ .+..+++...+. +....|+.+..+ ++
T Consensus 77 ~~~~~~g~~~~l~~~~~~~~---~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~v~~d-~~ 150 (221)
T cd06422 77 EPDELLETGGGIKKALPLLG---DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRN--PGHNGVGDFSLD-AD 150 (221)
T ss_pred CCCcccccHHHHHHHHHhcC---CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEc--CCCCCcceEEEC-CC
Confidence 65 67899999999999985 36899999999999999999999973 455666665554 456678988888 67
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (410)
++|..+.++|. ..++++|+|+|++++++.+.+. .+.+ .|+++.++++
T Consensus 151 ~~v~~~~~~~~---~~~~~~Giyi~~~~~l~~l~~~-----------------------------~~~~-~d~~~~l~~~ 197 (221)
T cd06422 151 GRLRRGGGGAV---APFTFTGIQILSPELFAGIPPG-----------------------------KFSL-NPLWDRAIAA 197 (221)
T ss_pred CcEeecccCCC---CceEEEEEEEEcHHHHhhCCcC-----------------------------cccH-HHHHHHHHHc
Confidence 78999988864 3789999999999998876531 1223 6889988888
Q ss_pred CceeEEeccceeeecCCccchhhh
Q 015259 242 KQLYTYETMDFWEQIKTPGMSLKC 265 (410)
Q Consensus 242 ~~i~~~~~~g~~~~i~t~~~~~~a 265 (410)
+.++++...|+|.+|+|+++|.+|
T Consensus 198 ~~~~~~~~~g~w~di~t~~~~~~a 221 (221)
T cd06422 198 GRLFGLVYDGLWFDVGTPERLLAA 221 (221)
T ss_pred CCeEEEecCCEEEcCCCHHHHhhC
Confidence 899999999999999999999875
No 40
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=1.9e-32 Score=253.35 Aligned_cols=232 Identities=23% Similarity=0.304 Sum_probs=186.3
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc------c--
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN------E-- 75 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~------~-- 75 (410)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+++.+ ++|++.+..+.+.+|++.... +
T Consensus 1 mkaiIlAaG--~gtRl~plt~~~pK~llpv~gkpli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (267)
T cd02541 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKG 78 (267)
T ss_pred CeEEEEcCC--CCccCCCcccCCCceeeEECCEEHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcc
Confidence 689999999 9999999999999999999999999999999997 778888878888888854210 0
Q ss_pred ------------CCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCC---ChHHHHHHHHhcCCceEEE
Q 015259 76 ------------LRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF---PLPEMLDAHRNYGGMGTIL 140 (410)
Q Consensus 76 ------------~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~---~l~~~l~~~~~~~~~~~l~ 140 (410)
.+.++.++.+....|++++++.+++++. .++|++++||.++.. ++.++++.|++.+++ +++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~Gt~~al~~~~~~i~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~ 154 (267)
T cd02541 79 KTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIG---DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIA 154 (267)
T ss_pred cHHHhhhhhcccCCceEEEEEcCCCCChHHHHHHHHHHhC---CCceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEE
Confidence 1345667777788999999999999986 368999999998743 499999999876655 455
Q ss_pred EEecCcccccccceEEEcCC---CCcEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHh
Q 015259 141 VIKVSAESASQFGELVADPD---TNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEA 215 (410)
Q Consensus 141 ~~~~~~~~~~~~~~v~~d~~---~~~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 215 (410)
+.....++...||++..|.. +++|..+.|||. ...+.++++|+|+|++++|+.+.+....
T Consensus 155 ~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~--------------- 219 (267)
T cd02541 155 VEEVPPEDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPG--------------- 219 (267)
T ss_pred EEEcChhcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCC---------------
Confidence 55554446678999988731 248999999985 3557889999999999999887542110
Q ss_pred hhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 216 LQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 216 ~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..+.+.+ .++++.+++++++++|++.|+|.+|+|+++|+++|+.+.
T Consensus 220 --------~~~e~~~-~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 220 --------KGGEIQL-TDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred --------CCCcEEH-HHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 1123345 799999998889999999999999999999999998764
No 41
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=3e-32 Score=251.11 Aligned_cols=227 Identities=25% Similarity=0.337 Sum_probs=182.1
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc---------
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN--------- 74 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~--------- 74 (410)
|+||||||| .|+||+|+|..+||+|+|++|+|||+|+|+++.+ ++|++.+..+.+.+|++....
T Consensus 1 m~avIlAaG--~gtRl~plt~~~pK~llpi~g~pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~ 78 (260)
T TIGR01099 1 RKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRG 78 (260)
T ss_pred CeEEEEccc--CcccCCCcccCCCceeEEECCEEHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhh
Confidence 689999999 9999999999999999999999999999999986 788888888888888863210
Q ss_pred -c---------C-CccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCC---ChHHHHHHHHhcCCceEEE
Q 015259 75 -E---------L-RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF---PLPEMLDAHRNYGGMGTIL 140 (410)
Q Consensus 75 -~---------~-~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~---~l~~~l~~~~~~~~~~~l~ 140 (410)
. . +..+.+..+.+..|++++++.+++++. .++|++++||.++.. ++.++++.|.+.++++ ++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~al~~~~~~~~---~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~ 154 (260)
T TIGR01099 79 KEELLKEVRSISPLATIFYVRQKEQKGLGHAVLCAEPFVG---DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IA 154 (260)
T ss_pred hHHHHHHhhhccccceEEEEecCCCCCHHHHHHHHHHhhC---CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EE
Confidence 0 0 124556667778999999999999884 478999999999743 6999999998877775 55
Q ss_pred EEecCcccccccceEEEcC---CCCcEEEEecCCC--CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHh
Q 015259 141 VIKVSAESASQFGELVADP---DTNELLHYTEKPE--TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEA 215 (410)
Q Consensus 141 ~~~~~~~~~~~~~~v~~d~---~~~~v~~i~ekp~--~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 215 (410)
+.....++...||++..+. ++++|..+.|||. ...++++++|+|+|++++|+.+......
T Consensus 155 ~~~~~~~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~--------------- 219 (260)
T TIGR01099 155 VEEVPKEEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPG--------------- 219 (260)
T ss_pred EEECChhhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCC---------------
Confidence 5555435677899988862 2368999999984 3457789999999999999888542211
Q ss_pred hhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhh
Q 015259 216 LQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKC 265 (410)
Q Consensus 216 ~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~a 265 (410)
..+.+.+ .|+++.+++++.+++|+++|+|.+|+|+++|+++
T Consensus 220 --------~~~~~~l-~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 220 --------AGGEIQL-TDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred --------CCCceeH-HHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 1133445 7899999888899999999999999999999875
No 42
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.98 E-value=3.7e-31 Score=238.24 Aligned_cols=218 Identities=28% Similarity=0.471 Sum_probs=182.0
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| .|+||+|+|...||+|+|++|+|||+|+++.+.+ ++|++.+..+.+.+++... ..++.++.+..+
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~i~g~pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 77 (223)
T cd06915 1 AVILAGG--LGTRLRSVVKDLPKPLAPVAGRPFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDG-YRGGIRIYYVIE 77 (223)
T ss_pred CEEecCC--cccccCcccCCCCccccEECCcchHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCc-cccCceEEEEEC
Confidence 6999999 9999999999999999999999999999999886 7777777777788887642 235556666666
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCcEE
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~v~ 165 (410)
....|++++++.+++.+. .++|++++||++++.++.++++.|++.+.++++++.+. ++...|+.+..+ ++++|.
T Consensus 78 ~~~~G~~~~l~~a~~~~~---~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~v~~d-~~~~v~ 151 (223)
T cd06915 78 PEPLGTGGAIKNALPKLP---EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRV--PDASRYGNVTVD-GDGRVI 151 (223)
T ss_pred CCCCcchHHHHHHHhhcC---CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEEC--CCCCcceeEEEC-CCCeEE
Confidence 778899999999999884 37899999999998899999999988778888888776 455678888888 568999
Q ss_pred EEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCcee
Q 015259 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245 (410)
Q Consensus 166 ~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~ 245 (410)
.+.++|....+.+.++|+|+|++++|+.+.... +.+..++++.+++++++.
T Consensus 152 ~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~~-----------------------------~~~~~~~~~~l~~~~~v~ 202 (223)
T cd06915 152 AFVEKGPGAAPGLINGGVYLLRKEILAEIPADA-----------------------------FSLEADVLPALVKRGRLY 202 (223)
T ss_pred EEEeCCCCCCCCcEEEEEEEECHHHHhhCCccC-----------------------------CChHHHHHHHHHhcCcEE
Confidence 999987765678999999999999988765320 112268888888777999
Q ss_pred EEeccceeeecCCccchhhhh
Q 015259 246 TYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 246 ~~~~~g~~~~i~t~~~~~~an 266 (410)
+|+..++|.+|+|++||.+|+
T Consensus 203 ~~~~~~~~~dI~t~~dl~~a~ 223 (223)
T cd06915 203 GFEVDGYFIDIGIPEDYARAQ 223 (223)
T ss_pred EEecCCeEEecCCHHHHHhhC
Confidence 999999999999999998873
No 43
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.98 E-value=3.9e-31 Score=237.65 Aligned_cols=214 Identities=29% Similarity=0.540 Sum_probs=178.8
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| +|+||+|+|...||+|+|++|+|||+|+|+.|.+ ++|++.+..+.+.+++.+. .+|+.++.++.+
T Consensus 1 ~vIlaaG--~g~R~~plt~~~pK~ll~~~g~pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-~~~~~~i~~~~~ 77 (220)
T cd06426 1 VVIMAGG--KGTRLRPLTENTPKPMLKVGGKPILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG-SKFGVNISYVRE 77 (220)
T ss_pred CEEecCC--CccccCcccCCCCCccCeECCcchHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc-cccCccEEEEEC
Confidence 6899999 9999999999999999999999999999999986 7788888778888888763 356777777776
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCcEE
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~v~ 165 (410)
....|+++++..+.+.. .++|++++||.+++.++..+++.|++.+.++++++... .....|+++..| + ++|.
T Consensus 78 ~~~~g~~~~l~~~~~~~----~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~d-~-~~v~ 149 (220)
T cd06426 78 DKPLGTAGALSLLPEKP----TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREY--EVQVPYGVVETE-G-GRIT 149 (220)
T ss_pred CCCCcchHHHHHHHhhC----CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEc--CCCCcceEEEEC-C-CEEE
Confidence 67789999998777655 37899999999998999999999988888888887765 344568988887 4 7999
Q ss_pred EEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC-ce
Q 015259 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK-QL 244 (410)
Q Consensus 166 ~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~-~i 244 (410)
.+.|+|.. +.++++|+|+|++++++.+.+. .++++ .++++.+++++ .+
T Consensus 150 ~~~ek~~~--~~~~~~Giy~~~~~~~~~i~~~----------------------------~~~~l-~~~~~~~i~~~~~i 198 (220)
T cd06426 150 SIEEKPTH--SFLVNAGIYVLEPEVLDLIPKN----------------------------EFFDM-PDLIEKLIKEGKKV 198 (220)
T ss_pred EEEECCCC--CCeEEEEEEEEcHHHHhhcCCC----------------------------CCcCH-HHHHHHHHHCCCcE
Confidence 99998754 5788999999999998876421 22334 78888887664 69
Q ss_pred eEEeccceeeecCCccchhhhh
Q 015259 245 YTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 245 ~~~~~~g~~~~i~t~~~~~~an 266 (410)
.+|+.+|+|.+++|+++|.+||
T Consensus 199 ~~~~~~~~w~~igt~~dl~~a~ 220 (220)
T cd06426 199 GVFPIHEYWLDIGRPEDYEKAN 220 (220)
T ss_pred EEEEeCCeEEeCCCHHHHHhhC
Confidence 9999999999999999999875
No 44
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=99.97 E-value=8.1e-31 Score=240.31 Aligned_cols=221 Identities=24% Similarity=0.427 Sum_probs=179.4
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc---cCCc----
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---ELRI---- 78 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~---~~~~---- 78 (410)
||||||| +|+||+|+|..+||||+|++|+|||+|+++.+.+ |+|++++..+.+.+++++..+ .|..
T Consensus 1 aiilaaG--~g~Rl~plt~~~pK~llpv~~~p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 78 (253)
T cd02524 1 VVILAGG--LGTRLSEETELKPKPMVEIGGRPILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGT 78 (253)
T ss_pred CEEEecC--CccccCCccCCCCceEEEECCEEHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeecc
Confidence 6899999 9999999999999999999999999999999997 777887888889999876321 1211
Q ss_pred -cEEEee------------CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecC
Q 015259 79 -PVRYLR------------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVS 145 (410)
Q Consensus 79 -~i~~i~------------~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~ 145 (410)
++.+.. +....|++++++++++++.. +++|++++||++++.++.++++.|...+++++++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~--~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~-- 154 (253)
T cd02524 79 NRIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD--DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH-- 154 (253)
T ss_pred cceeeecccccccceeecccCcccccHHHHHHHHHhcCC--CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec--
Confidence 011122 22356799999999999852 2689999999999999999999998888888877653
Q ss_pred cccccccceEEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCC
Q 015259 146 AESASQFGELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTT 225 (410)
Q Consensus 146 ~~~~~~~~~v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (410)
....|+++..| ++++|..+.+||... +.++++|+|+|++++++.+...
T Consensus 155 --~~~~~g~v~~d-~~g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l~~~---------------------------- 202 (253)
T cd02524 155 --PPGRFGELDLD-DDGQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYIDGD---------------------------- 202 (253)
T ss_pred --CCCcccEEEEC-CCCCEEEEEECCCCC-CceEEEEEEEECHHHHHhhccc----------------------------
Confidence 34578999988 678999999998653 5689999999999998877542
Q ss_pred CeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 226 DFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 226 ~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..++..|+++.+++++++++|...|+|.+|+|+++|.++...+.
T Consensus 203 -~~~~~~d~l~~li~~~~v~~~~~~g~w~~I~t~~~~~~~~~~~~ 246 (253)
T cd02524 203 -DTVFEREPLERLAKDGELMAYKHTGFWQCMDTLRDKQTLEELWN 246 (253)
T ss_pred -cchhhHHHHHHHHhcCCEEEEecCCEEEeCcCHHHHHHHHHHHH
Confidence 01122789999998889999999999999999999999997664
No 45
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.97 E-value=2.4e-30 Score=231.99 Aligned_cols=212 Identities=33% Similarity=0.566 Sum_probs=179.8
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| .|+||+|+|..+||+|+|++|+|||+|+++.+.+ ++|++.+..+.+.+++.+. ..|+..+.++.+
T Consensus 1 aiIlaaG--~g~R~~~~t~~~pK~ll~v~g~pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~-~~~~~~i~~~~~ 77 (217)
T cd04181 1 AVILAAG--KGTRLRPLTDTRPKPLLPIAGKPILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDG-SKFGVNIEYVVQ 77 (217)
T ss_pred CEEecCC--ccccccccccCCCccccEECCeeHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcCh-hhcCceEEEEeC
Confidence 6999999 9999999999999999999999999999999987 7777777777888887753 236677888777
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCcEE
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~v~ 165 (410)
....|++++++.+++++. .++|++++||++++.++.++++.|.++++++++++.+. +....|+++..| ++++|.
T Consensus 78 ~~~~g~~~al~~~~~~~~---~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~d-~~~~v~ 151 (217)
T cd04181 78 EEPLGTAGAVRNAEDFLG---DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEV--EDPSRYGVVELD-DDGRVT 151 (217)
T ss_pred CCCCccHHHHHHhhhhcC---CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEc--CCCCcceEEEEc-CCCcEE
Confidence 777899999999999883 47999999999999999999999998888889888876 466789999888 568999
Q ss_pred EEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCcee
Q 015259 166 HYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLY 245 (410)
Q Consensus 166 ~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~ 245 (410)
.+.|||....+.+.++|+|+|++++++.+.+... ... .+..++++.++++++++
T Consensus 152 ~~~ek~~~~~~~~~~~Giy~~~~~~~~~l~~~~~-------------------------~~~-~~~~~~~~~l~~~~~v~ 205 (217)
T cd04181 152 RFVEKPTLPESNLANAGIYIFEPEILDYIPEILP-------------------------RGE-DELTDAIPLLIEEGKVY 205 (217)
T ss_pred EEEECCCCCCCCEEEEEEEEECHHHHHhhhhcCC-------------------------ccc-ccHHHHHHHHHhcCCEE
Confidence 9999987666789999999999999988765321 011 22278999998888999
Q ss_pred EEeccceeeecC
Q 015259 246 TYETMDFWEQIK 257 (410)
Q Consensus 246 ~~~~~g~~~~i~ 257 (410)
+++.+|+|.+++
T Consensus 206 ~~~~~g~w~dig 217 (217)
T cd04181 206 GYPVDGYWLDIG 217 (217)
T ss_pred EEEcCCEEecCC
Confidence 999999999985
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.8e-30 Score=225.00 Aligned_cols=238 Identities=22% Similarity=0.298 Sum_probs=197.8
Q ss_pred CCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhc------
Q 015259 5 EDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSIS------ 73 (410)
Q Consensus 5 ~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~------ 73 (410)
|++.++|||+||| .||||.|.|+..||-||||.++|+|+|+++.+.. +++|++...+.+++|+....
T Consensus 1 ~~~irKAViPaAG--lGTRfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L 78 (291)
T COG1210 1 MMKIRKAVIPAAG--LGTRFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTL 78 (291)
T ss_pred CCcccEEEEEccC--cccccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHH
Confidence 3457899999999 9999999999999999999999999999999887 77777666667777765420
Q ss_pred ------------ccC--CccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCC---ChHHHHHHHHhcCCc
Q 015259 74 ------------NEL--RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF---PLPEMLDAHRNYGGM 136 (410)
Q Consensus 74 ------------~~~--~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~---~l~~~l~~~~~~~~~ 136 (410)
++. ..++.|++|.++.|.++|+++|++++. +++|.|+.+|.++.. .+.++++.+.+.+..
T Consensus 79 ~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLGhAVl~A~~~vg---~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~s 155 (291)
T COG1210 79 EKRGKRELLEEVRSIPPLVTISFVRQKEPLGLGHAVLCAKPFVG---DEPFAVLLPDDLVDSEKPCLKQMIELYEETGGS 155 (291)
T ss_pred HHhCHHHHHHHHHhcccCceEEEEecCCCCcchhHHHhhhhhcC---CCceEEEeCCeeecCCchHHHHHHHHHHHhCCc
Confidence 111 236788999999999999999999998 589999999998643 388999999887776
Q ss_pred eEEEEEecCcccccccceEE----EcCCCCcEEEEecCC--CCccccceeeeEEEEcHHHHHHhhhcccccccchhhhcc
Q 015259 137 GTILVIKVSAESASQFGELV----ADPDTNELLHYTEKP--ETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRV 210 (410)
Q Consensus 137 ~~l~~~~~~~~~~~~~~~v~----~d~~~~~v~~i~ekp--~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~ 210 (410)
++.+.++++++.+.||++. .+..-.+|..+.||| ++..|+++-.|-|+|+|++|+.|++....
T Consensus 156 -vi~v~ev~~e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd~L~~~~~G---------- 224 (291)
T COG1210 156 -VIGVEEVPPEDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFDILEETKPG---------- 224 (291)
T ss_pred -EEEEEECCHHHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHHHHhhCCCC----------
Confidence 6677788778889999987 331124899999998 46789999999999999999999874321
Q ss_pred chhHhhhhhccCCCCCeeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhh
Q 015259 211 SSFEALQSATRNLTTDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQ 272 (410)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~ 272 (410)
..+...| +|.+..|++...+++|.+.|..+|+|++..|++|+..|..+
T Consensus 225 -------------~ggEiQL-TDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~ 272 (291)
T COG1210 225 -------------AGGEIQL-TDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALR 272 (291)
T ss_pred -------------CCCEeeH-HHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhh
Confidence 1255567 99999999999999999999999999999999999888654
No 47
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.95 E-value=8.9e-28 Score=215.03 Aligned_cols=176 Identities=23% Similarity=0.440 Sum_probs=142.3
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCC-----c
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELR-----I 78 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~-----~ 78 (410)
++||||||| .|+||+|+|..+||||+|++|+|||+|+|+++.+ |+|++.+..+.+.+|+++. ..|+ .
T Consensus 1 ~~aiIla~G--~g~Rl~plt~~~pK~llpi~g~piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~-~~~~~~~~~~ 77 (217)
T cd04197 1 LQAVVLADS--FNRRFRPLTKEKPRCLLPLANVPLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKS-KWSKPKSSLM 77 (217)
T ss_pred CeEEEEcCC--CcccccccccCCCceeeEECCEehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhc-cccccccCcc
Confidence 589999999 9999999999999999999999999999999987 7777777888999999874 3343 3
Q ss_pred cEEEeeCCCCCCcHHHHHHh--HHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhc-----CCceEEEEEecCcccc--
Q 015259 79 PVRYLREDKPHGSAGALYNF--RDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNY-----GGMGTILVIKVSAESA-- 149 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~--~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~-----~~~~~l~~~~~~~~~~-- 149 (410)
.+.++.+.+..|++++++.. +..+ .++|++++||++++.++.++++.|++. ++++|+++++...+..
T Consensus 78 ~i~~~~~~~~~~~~~al~~~~~~~~~----~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~ 153 (217)
T cd04197 78 IVIIIMSEDCRSLGDALRDLDAKGLI----RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTR 153 (217)
T ss_pred eEEEEeCCCcCccchHHHHHhhcccc----CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccc
Confidence 46666666777888888643 3334 368999999999999999999999873 7888988888743321
Q ss_pred --cccceEEEcCCCCcEEEEecCCCCc--------------------cccceeeeEEEEcHHHH
Q 015259 150 --SQFGELVADPDTNELLHYTEKPETF--------------------VSDLINCGVYVFTPDIF 191 (410)
Q Consensus 150 --~~~~~v~~d~~~~~v~~i~ekp~~~--------------------~~~l~~~Giy~~~~~~~ 191 (410)
..++++..|+++++|+.+.|||..+ ++++.++|+|+|+++++
T Consensus 154 ~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 154 RTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred cCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 2356788874458999999987532 38999999999999864
No 48
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.95 E-value=3.3e-27 Score=213.41 Aligned_cols=221 Identities=21% Similarity=0.314 Sum_probs=162.5
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| .|+||+|+|..+||+|+|++|+|||+|+|+.+.+ |+|++.+..+.+.++++.. .+..+.+..+
T Consensus 1 aiIlAaG--~g~Rl~~lt~~~pK~l~~~~g~~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~---~~~~~~~~~~ 75 (229)
T cd02523 1 AIILAAG--RGSRLRPLTEDRPKCLLEINGKPLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY---PNIKFVYNPD 75 (229)
T ss_pred CEEEecc--CccccchhhCCCCceeeeECCEEHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc---CCeEEEeCcc
Confidence 6999999 9999999999999999999999999999999986 7777777778888887642 2333333333
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCcEE
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNELL 165 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~v~ 165 (410)
....|++++++.+++++. ++|++++||++++. ++++.|.+.++++++++.+..+.....++....+ .+++.
T Consensus 76 ~~~~g~~~s~~~~~~~~~----~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 146 (229)
T cd02523 76 YAETNNIYSLYLARDFLD----EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTKEWEDEYVKDLDD--AGVLL 146 (229)
T ss_pred hhhhCcHHHHHHHHHHcC----CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcccccccceeeecC--ccceE
Confidence 447899999999999883 78999999999854 5677777777888888876432333344433333 36788
Q ss_pred EEecCCCCcc-ccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCC--
Q 015259 166 HYTEKPETFV-SDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKK-- 242 (410)
Q Consensus 166 ~i~ekp~~~~-~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~-- 242 (410)
.+.++|.... ..+.++|+|+|++++++.+.+......+. +.....+ +++++.++++.
T Consensus 147 ~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~-------------------~~~~~~~-~d~i~~l~~~~~~ 206 (229)
T cd02523 147 GIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEA-------------------GRVNLYY-EDALQRLISEEGV 206 (229)
T ss_pred eecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhc-------------------ccccccH-HHHHHHHHhhcCe
Confidence 8888875443 56889999999999988776533211100 0011223 78999888733
Q ss_pred ceeEEeccceeeecCCccchhhhh
Q 015259 243 QLYTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 243 ~i~~~~~~g~~~~i~t~~~~~~an 266 (410)
.++.+.. ++|.+|+++++|.+|+
T Consensus 207 ~v~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 207 KVKDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred eEEEcCC-CCEEEeCCHHHHHhhC
Confidence 4555555 8999999999998863
No 49
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.94 E-value=4.5e-26 Score=206.28 Aligned_cols=218 Identities=21% Similarity=0.327 Sum_probs=159.6
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccch---HHHHHHHHhhcccCCccEEE
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEE---REFALYVSSISNELRIPVRY 82 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~---~~i~~~~~~~~~~~~~~i~~ 82 (410)
+|||||| +|+||+|+|..+||||+|++|+|||+|+|+.+.+ +++++.... ..+...+... ..+..+.+
T Consensus 1 ~iIlAaG--~g~Rl~plt~~~pK~ll~i~g~pli~~~l~~l~~~g~~~ivvv~~~~~~~~~~~~~~~~~~--~~~~~i~~ 76 (231)
T cd04183 1 IIIPMAG--LGSRFKKAGYTYPKPLIEVDGKPMIEWVIESLAKIFDSRFIFICRDEHNTKFHLDESLKLL--APNATVVE 76 (231)
T ss_pred CEEECCc--CCccccccCCCCCceeeEECCEEHHHHHHHhhhccCCceEEEEEChHHhhhhhHHHHHHHh--CCCCEEEE
Confidence 4899999 9999999999999999999999999999999987 555543221 1122222221 12334433
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN 162 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~ 162 (410)
.+....|++++++.++..+.. .++|++++||++++.++.++++.|.+.+..+++++... ....|+.+..| +++
T Consensus 77 -~~~~~~g~~~~l~~a~~~l~~--~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~v~~d-~~~ 149 (231)
T cd04183 77 -LDGETLGAACTVLLAADLIDN--DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWSYVKLD-ENG 149 (231)
T ss_pred -eCCCCCcHHHHHHHHHhhcCC--CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeEEEEEC-CCC
Confidence 345688999999999998841 36899999999999999999998877666666666554 34468988888 678
Q ss_pred cEEEEecCCCCccccceeeeEEEEcHH-HH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 163 ELLHYTEKPETFVSDLINCGVYVFTPD-IF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 163 ~v~~i~ekp~~~~~~l~~~Giy~~~~~-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
+|..+.+|+. .+.+.++|+|+|+++ .| +.+.+...... + ..+.+.+ .++++.+++
T Consensus 150 ~v~~~~ek~~--~~~~~~~Giy~~~~~~~~~~~l~~~~~~~~-------------------~-~~~~~~~-~d~i~~~~~ 206 (231)
T cd04183 150 RVIETAEKEP--ISDLATAGLYYFKSGSLFVEAAKKMIRKDD-------------------S-VNGEFYI-SPLYNELIL 206 (231)
T ss_pred CEEEeEEcCC--CCCccEeEEEEECcHHHHHHHHHHHHhhcc-------------------c-ccCcEEE-hHHHHHHHH
Confidence 8999988743 467899999999987 43 55543211000 0 1122334 789999886
Q ss_pred CC-ceeEEec-cceeeecCCccch
Q 015259 241 KK-QLYTYET-MDFWEQIKTPGMS 262 (410)
Q Consensus 241 ~~-~i~~~~~-~g~~~~i~t~~~~ 262 (410)
++ .+.++.. .++|.+++||++|
T Consensus 207 ~g~~v~~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 207 DGKKVGIYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred cCCEEEEEEeccccEEEcCChHhc
Confidence 65 6999998 6899999999987
No 50
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.94 E-value=2.5e-26 Score=203.05 Aligned_cols=182 Identities=27% Similarity=0.511 Sum_probs=146.8
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCc-cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCcc-----
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIP----- 79 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~----- 79 (410)
||||||| +|+||+|+|...||+|+|++|+ |||+|+++++.+ ++|++.+..+.+.+++++. ..|+.+
T Consensus 1 avILAaG--~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~ 77 (200)
T cd02508 1 AIILAGG--EGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGG 77 (200)
T ss_pred CEEeCCC--CCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCC
Confidence 6899999 9999999999999999999999 999999999986 7888778788888888764 345443
Q ss_pred EEEee------CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccc
Q 015259 80 VRYLR------EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 80 i~~i~------~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (410)
+.++. +.+..|++++++.+++++.....++|++++||++++.++.++++.|+++++.+++++.
T Consensus 78 ~~~~~~~~~~~~~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~----------- 146 (200)
T cd02508 78 LFILPPQQRKGGDWYRGTADAIYQNLDYIERSDPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK----------- 146 (200)
T ss_pred EEEeCcccCCCCCcccCcHHHHHHHHHHHHhCCCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh-----------
Confidence 34432 3567899999999999985333468999999999999999999999888777777653
Q ss_pred eEEEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHH-HhhhcccccccchhhhccchhHhhhhhccCCCCCeeeecc
Q 015259 154 ELVADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFN-AIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQ 232 (410)
Q Consensus 154 ~v~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (410)
+++|+|+|++++|. .+..... .+.. ++..
T Consensus 147 -------------------------~~~g~yi~~~~~~~~~l~~~~~------------------------~~~~-~~~~ 176 (200)
T cd02508 147 -------------------------ASMGIYIFSKDLLIELLEEDAA------------------------DGSH-DFGK 176 (200)
T ss_pred -------------------------hcCEEEEEEHHHHHHHHHHHhc------------------------cCcc-hhHH
Confidence 77999999999984 4443211 0011 2338
Q ss_pred chhccccCCCceeEEeccceeeec
Q 015259 233 DILSPLAGKKQLYTYETMDFWEQI 256 (410)
Q Consensus 233 d~l~~l~~~~~i~~~~~~g~~~~i 256 (410)
|+++.+++++++++|+++|+|.||
T Consensus 177 d~i~~l~~~~~v~~~~~~g~w~di 200 (200)
T cd02508 177 DIIPAMLKKLKIYAYEFNGYWADI 200 (200)
T ss_pred HHHHHHhccCcEEEEEeCCeEecC
Confidence 999999988999999999999985
No 51
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.93 E-value=5e-25 Score=196.69 Aligned_cols=177 Identities=29% Similarity=0.486 Sum_probs=141.1
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccc-hHHHHHHHHhhc--ccCCccE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYE-EREFALYVSSIS--NELRIPV 80 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~-~~~i~~~~~~~~--~~~~~~i 80 (410)
|+||||||| +|+||+|+|...||+|+|++|+|||+|+++++.+ ++|++.+. .+.++++++... ......+
T Consensus 1 ~~aVILAgG--~g~R~~plt~~~pK~Llpv~g~pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~~~~~~~~~~ 78 (214)
T cd04198 1 FQAVILAGG--GGSRLYPLTDNIPKALLPVANKPMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFPLNLKQKLDE 78 (214)
T ss_pred CEEEEEeCC--CCCcCCccccCCCcccCEECCeeHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcccccCcceeE
Confidence 689999999 9999999999999999999999999999999997 66666653 456778776531 1112234
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcc-----------cc
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAE-----------SA 149 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~-----------~~ 149 (410)
.+..+....|++++|+.+++.+. ++|++++||.+++.++.++++.|++.++.+|+++++.... ..
T Consensus 79 ~~~~~~~~~gt~~al~~~~~~i~----~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 154 (214)
T cd04198 79 VTIVLDEDMGTADSLRHIRKKIK----KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKA 154 (214)
T ss_pred EEecCCCCcChHHHHHHHHhhcC----CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCC
Confidence 45556788999999999999874 7899999999999999999999999889999998875311 12
Q ss_pred cccceEEEcCCCCcEEEEecCC-----------------C-CccccceeeeEEEEcHHHH
Q 015259 150 SQFGELVADPDTNELLHYTEKP-----------------E-TFVSDLINCGVYVFTPDIF 191 (410)
Q Consensus 150 ~~~~~v~~d~~~~~v~~i~ekp-----------------~-~~~~~l~~~Giy~~~~~~~ 191 (410)
..+.++..|+++++++.+.... . ..++++.++|+|+|+++++
T Consensus 155 ~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 155 DERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 3466788887788999887631 1 2468999999999998863
No 52
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.92 E-value=9.1e-25 Score=195.21 Aligned_cols=177 Identities=27% Similarity=0.497 Sum_probs=136.4
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcc---cCCc--
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISN---ELRI-- 78 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~---~~~~-- 78 (410)
|+||||||| .|+||.|+|...||+|+|++|+|||+|+++++.+ ++|++.+..+.+.+++.+... ..+.
T Consensus 1 ~~avIlagg--~g~rl~plt~~~pK~llpv~g~pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v 78 (216)
T cd02507 1 FQAVVLADG--FGSRFLPLTSDIPKALLPVANVPLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIV 78 (216)
T ss_pred CeEEEEeCC--CccccCccccCCCcccceECCEEHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccccccCCceE
Confidence 689999999 9999999999999999999999999999999986 777877777777777765321 1122
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHH--HHhcCCceEEEEEecCccc-------c
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDA--HRNYGGMGTILVIKVSAES-------A 149 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~--~~~~~~~~~l~~~~~~~~~-------~ 149 (410)
.+.+..+.+..|++++++.+++.+. ++|++++||++++.++.++++. +...++++++++....... .
T Consensus 79 ~~~~~~~~~~~Gta~~l~~~~~~i~----~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (216)
T cd02507 79 DVITSDLCESAGDALRLRDIRGLIR----SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKT 154 (216)
T ss_pred EEEEccCCCCCccHHHHHHHhhcCC----CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccC
Confidence 3334455678999999999999885 7899999999999999999965 4444566665555543222 4
Q ss_pred cccceEEEcCCC--CcEEEEecCCCC------------------ccccceeeeEEEEcHHHH
Q 015259 150 SQFGELVADPDT--NELLHYTEKPET------------------FVSDLINCGVYVFTPDIF 191 (410)
Q Consensus 150 ~~~~~v~~d~~~--~~v~~i~ekp~~------------------~~~~l~~~Giy~~~~~~~ 191 (410)
..++++..|+++ .+++.+.++++. .++++.++|+|+|+++++
T Consensus 155 ~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 155 EEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred CCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 457888888555 466666665432 368999999999999863
No 53
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.91 E-value=1.9e-23 Score=192.96 Aligned_cols=181 Identities=19% Similarity=0.258 Sum_probs=136.8
Q ss_pred eEEEEEecCCCCCCccccCCC-CCCccccccCC-ccchhhhHhhccc------EEEecccc-hHHHHHHHHhhcccCCcc
Q 015259 9 VVAVIMVGGPTKGTRFRPLSL-NIPKPLFPLGG-QPMVHHPISACKR------IYLVGFYE-EREFALYVSSISNELRIP 79 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~-~~pK~llpi~g-~pli~~~l~~l~~------i~vv~~~~-~~~i~~~~~~~~~~~~~~ 79 (410)
|++|||||| .|+||+|+|. .+||+|+|++| +|||+|+++++.. ++|++.+. .+.+.+++++ ....
T Consensus 1 m~~vILAgG--~GtRl~PlS~~~~PK~ll~l~g~~~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~----~~~~ 74 (274)
T cd02509 1 IYPVILAGG--SGTRLWPLSRESYPKQFLKLFGDKSLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE----GLPE 74 (274)
T ss_pred CEEEEEccc--ccccCCcCCCCCCCceEeEcCCCCcHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh----cCCC
Confidence 689999999 9999999996 79999999999 9999999999875 66666643 3455666543 2235
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhccc-CCCcEEEEcCCcccC--CChHHHHHHHHh---cCCceEEEEEecCcccccccc
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMED-NPSHIFLLNCDVCCS--FPLPEMLDAHRN---YGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~-~~~~~lvl~~D~i~~--~~l~~~l~~~~~---~~~~~~l~~~~~~~~~~~~~~ 153 (410)
+.++.+....||++++..++.++... .++.++|++||+++. .++.++++.+.+ .+..+|+.+.+. ...+.||
T Consensus 75 ~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~--~~~t~yG 152 (274)
T cd02509 75 ENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPT--RPETGYG 152 (274)
T ss_pred ceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeec--CCCCCeE
Confidence 67777778899999999998887532 246789999999875 457777765443 456777777665 4457899
Q ss_pred eEEEcCCC--C---cEEEEecCCCCc--------cccceeeeEEEEcHHH-HHHhhhcc
Q 015259 154 ELVADPDT--N---ELLHYTEKPETF--------VSDLINCGVYVFTPDI-FNAIQGVS 198 (410)
Q Consensus 154 ~v~~d~~~--~---~v~~i~ekp~~~--------~~~l~~~Giy~~~~~~-~~~l~~~~ 198 (410)
++..+ ++ + +|..|.|||+.. ...+.++|+|+|+++. ++.|+...
T Consensus 153 yI~~~-~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~ 210 (274)
T cd02509 153 YIEAG-EKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHA 210 (274)
T ss_pred EEEeC-CcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHC
Confidence 99987 33 2 899999999632 1247899999999876 46666543
No 54
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.91 E-value=3.2e-23 Score=187.36 Aligned_cols=214 Identities=23% Similarity=0.383 Sum_probs=161.4
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| .|+||++ ..||+|+|++|+|||+|+++.+.+ +++++.+..+.+.++++. + .+.++.+
T Consensus 1 aiIlaaG--~g~R~~~---~~pK~l~~v~gkpli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~----~--~~~~~~~ 69 (229)
T cd02540 1 AVILAAG--KGTRMKS---DLPKVLHPLAGKPMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN----P--NVEFVLQ 69 (229)
T ss_pred CEEEeCC--CCccCCC---CCChhcceeCCccHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC----C--CcEEEEC
Confidence 6999999 9999986 789999999999999999999987 677776667777777653 2 3555666
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~ 163 (410)
....|++++++.+++++.. ..++|++++||.++ ..++.++++.|.+.++++++...+. +++..|+.+..+ ++++
T Consensus 70 ~~~~g~~~ai~~a~~~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~--~~p~~~~~~~~~-~~~~ 145 (229)
T cd02540 70 EEQLGTGHAVKQALPALKD-FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAEL--EDPTGYGRIIRD-GNGK 145 (229)
T ss_pred CCCCCCHHHHHHHHHhhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEc--CCCCCccEEEEc-CCCC
Confidence 6678999999999998853 23689999999953 5679999998887667777777666 456678887777 5678
Q ss_pred EEEEecCCCCc----cccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 164 LLHYTEKPETF----VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 164 v~~i~ekp~~~----~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
|..+.+++... .+.+.++|+|+|+++. ++.++...... .+..+.+ .++++.+
T Consensus 146 v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~----------------------~~~~~~~-~d~~~~~ 202 (229)
T cd02540 146 VLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNN----------------------AQGEYYL-TDIIALA 202 (229)
T ss_pred EEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHccccc----------------------CCCcEEH-HHHHHHH
Confidence 99999876422 1367899999999875 46665432110 0122334 8999998
Q ss_pred cCCC-ceeEEeccce--eeecCCccch
Q 015259 239 AGKK-QLYTYETMDF--WEQIKTPGMS 262 (410)
Q Consensus 239 ~~~~-~i~~~~~~g~--~~~i~t~~~~ 262 (410)
++.+ .|+++..+|+ |+.++|+.++
T Consensus 203 ~~~g~~v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 203 VADGLKVAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred HHCCCEEEEEEcCCcceEecCCChHhC
Confidence 8664 7999998765 7778888653
No 55
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=1.1e-22 Score=175.35 Aligned_cols=224 Identities=14% Similarity=0.223 Sum_probs=148.2
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEec-ccchHHHHHHHHhhcccCCcc
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVG-FYEEREFALYVSSISNELRIP 79 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~-~~~~~~i~~~~~~~~~~~~~~ 79 (410)
|..|+||||||| +|+||+| +.||||+.++|+|+|+|+|++|.+ ++||+ .+..+.+++++++. .+..+
T Consensus 1 ~~~~kavILAAG--~GsRlg~---~~PK~Lvev~gr~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~~--~~~~~ 73 (239)
T COG1213 1 MHPMKAVILAAG--FGSRLGP---DIPKALVEVGGREIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKKY--PFNAK 73 (239)
T ss_pred CCceeEEEEecc--cccccCC---CCCchhhhcCCeEeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhcC--CcceE
Confidence 346999999999 9999999 999999999999999999999998 56665 67778888888763 22234
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccc-cceEEEc
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQ-FGELVAD 158 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~v~~d 158 (410)
+.+...++..+++.||+.+++++. +.|++++||++++.. +++...+.++. ++.+...+...... -..+..
T Consensus 74 iv~N~~y~ktN~~~Sl~~akd~~~----~~fii~~sD~vye~~---~~e~l~~a~~~-~li~d~~~~~~~~~ea~kv~~- 144 (239)
T COG1213 74 IVINSDYEKTNTGYSLLLAKDYMD----GRFILVMSDHVYEPS---ILERLLEAPGE-GLIVDRRPRYVGVEEATKVKD- 144 (239)
T ss_pred EEeCCCcccCCceeEEeeehhhhc----CcEEEEeCCEeecHH---HHHHHHhCcCC-cEEEeccccccccCceeEEEe-
Confidence 444444566667999999999996 679999999999544 33333333333 23333321111111 112333
Q ss_pred CCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
+++++..+.++-. ..+..++|++.++.++|+.+.+...... .+.+ .++....
T Consensus 145 -e~G~i~~igK~l~--e~~~e~iGi~~l~~~i~~~~~~~~~e~~------------------------~~~~-~~~~~~~ 196 (239)
T COG1213 145 -EGGRIVEIGKDLT--EYDGEDIGIFILSDSIFEDTYELLVERS------------------------EYDY-REVEKEA 196 (239)
T ss_pred -cCCEEehhcCCcc--cccceeeeeEEechHHHHHHHHHHhhhh------------------------hHHH-HHHHHHh
Confidence 5789999987633 4677889999999998876655332110 0111 1222211
Q ss_pred -cCCCceeEEeccceeeecCCccchhhhhHHHHhhh
Q 015259 239 -AGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQF 273 (410)
Q Consensus 239 -~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~ 273 (410)
+....+.......+|++|+||||+.++...+....
T Consensus 197 ~~~~~~~di~~~g~~w~EVDtpeDl~~ar~~~~~~~ 232 (239)
T COG1213 197 GLPFTEVDIHVDGLFWMEVDTPEDLERARKYLVPNI 232 (239)
T ss_pred CCceEEeeccccCceeEecCCHHHHHHHHHHHHHHH
Confidence 11111221211357999999999999988766543
No 56
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.89 E-value=6.7e-22 Score=180.58 Aligned_cols=221 Identities=14% Similarity=0.147 Sum_probs=151.1
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
++.+|||||| .|+||. ||+|+|++|+|||+|+++.|.+ ++|++. .+.+.+++.. ++.++.+
T Consensus 2 ~~~~iIlA~g--~S~R~~------~K~Ll~i~Gkpll~~~l~~l~~~~i~~ivvv~~--~~~i~~~~~~----~~~~v~~ 67 (245)
T PRK05450 2 KFLIIIPARY--ASTRLP------GKPLADIGGKPMIVRVYERASKAGADRVVVATD--DERIADAVEA----FGGEVVM 67 (245)
T ss_pred ceEEEEecCC--CCCCCC------CCcccccCCcCHHHHHHHHHHhcCCCeEEEECC--cHHHHHHHHH----cCCEEEE
Confidence 5889999999 999994 5999999999999999999886 666654 2455555543 3445555
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEec-C---cccccccceEE
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV-S---AESASQFGELV 156 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~-~---~~~~~~~~~v~ 156 (410)
..+....|+++... +...+.....+.+++++||.++ ...+.++++.|...+.+++++..+. + ..++..++++
T Consensus 68 ~~~~~~~gt~~~~~-~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 145 (245)
T PRK05450 68 TSPDHPSGTDRIAE-AAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV- 145 (245)
T ss_pred CCCcCCCchHHHHH-HHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-
Confidence 44555556655433 3333321113568999999964 4568999998876656656555544 1 1234456654
Q ss_pred EcCCCCcEEEEecCCCC----------ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCC
Q 015259 157 ADPDTNELLHYTEKPET----------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTD 226 (410)
Q Consensus 157 ~d~~~~~v~~i~ekp~~----------~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (410)
+| ++++|+.|.++|.. ..+.+.++|+|+|++++++.+.+...... +
T Consensus 146 ~d-~~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~-----------------------~ 201 (245)
T PRK05450 146 LD-ADGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPL-----------------------E 201 (245)
T ss_pred eC-CCCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCcc-----------------------c
Confidence 77 67899999998731 23589999999999999988765321110 0
Q ss_pred eeeeccchhccccCCCceeEEeccc-eeeecCCccchhhhhHHH
Q 015259 227 FVRLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 227 ~~~l~~d~l~~l~~~~~i~~~~~~g-~~~~i~t~~~~~~an~~~ 269 (410)
.... .+.++.+.++..++++..+| +|.+||||+||.+|+..+
T Consensus 202 ~~~~-~~~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 202 KIES-LEQLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred cchh-HHHHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 0001 22233333556899999886 999999999999998654
No 57
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.88 E-value=2.5e-21 Score=176.17 Aligned_cols=213 Identities=16% Similarity=0.182 Sum_probs=147.5
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+.+|||||| .|+||. ||+|+|++|+|||+|+++.+.+ |+|+..+ +.+.+++.+ ++.++.+
T Consensus 2 ~~~iIlA~g--~s~R~~------~K~l~~i~gkpll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~----~~~~~~~ 67 (239)
T cd02517 2 VIVVIPARY--ASSRLP------GKPLADIAGKPMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES----FGGKVVM 67 (239)
T ss_pred EEEEEecCC--CCCCCC------CCCCcccCCcCHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH----cCCEEEE
Confidence 679999999 999995 5999999999999999999875 5666543 456666543 3444544
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhc-CCceEEEEEecCccccc---ccce--
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY-GGMGTILVIKVSAESAS---QFGE-- 154 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~-~~~~~l~~~~~~~~~~~---~~~~-- 154 (410)
..+....|+++ +..+.+.+.. ..+.|++++||.++ ..++..+++.|.+. +.++++++.+. .++. .++.
T Consensus 68 ~~~~~~~gt~~-~~~~~~~~~~-~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 143 (239)
T cd02517 68 TSPDHPSGTDR-IAEVAEKLDA-DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPI--SDEEELFNPNVVK 143 (239)
T ss_pred cCcccCchhHH-HHHHHHhcCC-CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEc--CCHHHccCCCCCE
Confidence 44445567764 5556665641 12679999999853 56689999988765 56777777765 2222 3443
Q ss_pred EEEcCCCCcEEEEecCCC-------CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCe
Q 015259 155 LVADPDTNELLHYTEKPE-------TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (410)
Q Consensus 155 v~~d~~~~~v~~i~ekp~-------~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (410)
+..+ ++++|+.|.+++. .+.+.++++|+|+|++++++.+.+... ..
T Consensus 144 v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~~--------------------------~~ 196 (239)
T cd02517 144 VVLD-KDGYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALPP--------------------------SP 196 (239)
T ss_pred EEEC-CCCCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCCC--------------------------ch
Confidence 5555 4678988876542 124679999999999999987754211 00
Q ss_pred eeeccchhc--cccCC-CceeEEeccceeeecCCccchhhhhH
Q 015259 228 VRLDQDILS--PLAGK-KQLYTYETMDFWEQIKTPGMSLKCSG 267 (410)
Q Consensus 228 ~~l~~d~l~--~l~~~-~~i~~~~~~g~~~~i~t~~~~~~an~ 267 (410)
+++ .+.+. .++++ ..++++...+.|.+||||++|.++++
T Consensus 197 ~~~-~~~~~~~~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 197 LEQ-IESLEQLRALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred hhh-hhhHHHHHHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 111 22322 23444 46999988889999999999998874
No 58
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.88 E-value=2.4e-21 Score=191.41 Aligned_cols=241 Identities=17% Similarity=0.246 Sum_probs=156.5
Q ss_pred eEEEEEecCCCCCCccccCCCC-CCccccccCC-ccchhhhHhhccc-----EEEecccch-HHHHHHHHhhcccCCcc-
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLN-IPKPLFPLGG-QPMVHHPISACKR-----IYLVGFYEE-REFALYVSSISNELRIP- 79 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~-~pK~llpi~g-~pli~~~l~~l~~-----i~vv~~~~~-~~i~~~~~~~~~~~~~~- 79 (410)
|.+|||||| .|+||+|+|.. +||+|+|+.| +|||+|+++.|.. ++|++.... ..+.+.+.. ++.+
T Consensus 1 ~~~vILAgG--~GtRl~PlS~~~~PK~~l~l~g~~~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~----~~~~~ 74 (468)
T TIGR01479 1 IIPVILAGG--SGTRLWPLSRELYPKQFLALVGDLTMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE----IGKLA 74 (468)
T ss_pred CEEEEecCc--ccccCCccccCCCCCceeEcCCCCcHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH----cCCCc
Confidence 579999999 99999999986 9999999977 8999999999976 556655322 234444432 3333
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcc--cCCCcEEEEcCCcccC--CChHHHHHHHH---hcCCceEEEEEecCccccccc
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIME--DNPSHIFLLNCDVCCS--FPLPEMLDAHR---NYGGMGTILVIKVSAESASQF 152 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~--~~~~~~lvl~~D~i~~--~~l~~~l~~~~---~~~~~~~l~~~~~~~~~~~~~ 152 (410)
..++.++...||++++..+..++.+ ..++.++|++||+++. .+|.++++.+. +.+..+++...+. ...+.|
T Consensus 75 ~~~i~Ep~~~gTa~ai~~aa~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~p~--~p~t~Y 152 (468)
T TIGR01479 75 SNIILEPVGRNTAPAIALAALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIVPT--HPETGY 152 (468)
T ss_pred ceEEecccccCchHHHHHHHHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEecCC--CCCCCc
Confidence 3577788889999999887766632 1234589999998764 34888887653 3344555555443 455789
Q ss_pred ceEEEcC-----CCCcEEEEecCCCCc--------cccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhh
Q 015259 153 GELVADP-----DTNELLHYTEKPETF--------VSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQS 218 (410)
Q Consensus 153 ~~v~~d~-----~~~~v~~i~ekp~~~--------~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 218 (410)
|++..+. +.++|..|.|||+.. ...++++|+|+|+++. ++.|.+......+.-.. .+.
T Consensus 153 GyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~~~~~-------~~~- 224 (468)
T TIGR01479 153 GYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYEACEA-------AVE- 224 (468)
T ss_pred eEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHHHHHH-------HHH-
Confidence 9999872 125899999998631 1357899999999765 45555433222110000 000
Q ss_pred hccCCCCCeeeeccchhc---------ccc-CCCceeEEeccceeeecCCccchhhhh
Q 015259 219 ATRNLTTDFVRLDQDILS---------PLA-GKKQLYTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 219 ~~~~~~~~~~~l~~d~l~---------~l~-~~~~i~~~~~~g~~~~i~t~~~~~~an 266 (410)
..+...+...+..++++ .+. +...+++.+.+..|.|+|+++++++..
T Consensus 225 -~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 225 -ASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred -hccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 00000011112122332 222 334688889888899999999998754
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.84 E-value=1e-19 Score=165.40 Aligned_cols=214 Identities=18% Similarity=0.215 Sum_probs=145.0
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
++.|||||+| .++||. +|+|+|++|+|||+|+++.+.+ |+|++.+ +.+.+++++ ++.++.
T Consensus 2 ~~~aiIlA~g--~s~R~~------~K~l~~i~GkPli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~----~~~~v~ 67 (238)
T PRK13368 2 KVVVVIPARY--GSSRLP------GKPLLDILGKPMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA----FGGKVV 67 (238)
T ss_pred cEEEEEecCC--CCCCCC------CCccCccCCcCHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH----cCCeEE
Confidence 5789999999 999994 4999999999999999998876 6666643 456666653 455555
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCC-ceEEEEEecCc-c---cccccce
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGG-MGTILVIKVSA-E---SASQFGE 154 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~-~~~l~~~~~~~-~---~~~~~~~ 154 (410)
+..+....|++ .+..+.+.+. .+.|++++||.++ ..++.++++.+.+.+. .+++++..... . ++..+++
T Consensus 68 ~~~~~~~~g~~-~~~~a~~~~~---~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 143 (238)
T PRK13368 68 MTSDDHLSGTD-RLAEVMLKIE---ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV 143 (238)
T ss_pred ecCccCCCccH-HHHHHHHhCC---CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE
Confidence 44445555666 4665666553 3689999999764 6679999998866543 44445544321 1 1333333
Q ss_pred EEEcCCCCcEEEEecCCCC------ccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCee
Q 015259 155 LVADPDTNELLHYTEKPET------FVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (410)
Q Consensus 155 v~~d~~~~~v~~i~ekp~~------~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (410)
..+ +++++..+.++|.. ..+.+.++|+|+|++++|+.+...... +..
T Consensus 144 -~~~-~~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~~~~~~~-------------------------~~~ 196 (238)
T PRK13368 144 -VVD-KNGDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQFSQLPET-------------------------PLE 196 (238)
T ss_pred -EEC-CCCCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHHHcCCCC-------------------------hhh
Confidence 444 46789888865421 114478999999999999876532100 000
Q ss_pred eec-cchhcccc-CCCceeEEeccceeeecCCccchhhhhH
Q 015259 229 RLD-QDILSPLA-GKKQLYTYETMDFWEQIKTPGMSLKCSG 267 (410)
Q Consensus 229 ~l~-~d~l~~l~-~~~~i~~~~~~g~~~~i~t~~~~~~an~ 267 (410)
.+. .+++ .++ .+..++++..+++|.||+||+||.+++.
T Consensus 197 ~~~~~~~~-~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~ 236 (238)
T PRK13368 197 QIESLEQL-RALEHGEKIRMVEVAATSIGVDTPEDLERVRA 236 (238)
T ss_pred hhhhHHHH-HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHH
Confidence 011 2555 344 4557999998899999999999998875
No 60
>PLN02917 CMP-KDO synthetase
Probab=99.77 E-value=2.2e-17 Score=153.25 Aligned_cols=223 Identities=14% Similarity=0.154 Sum_probs=148.0
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
++.+||||+| .++||. +|+|++++|+|||+|+++.+.. .+|++ .+.+.+.+++.. ++.++..
T Consensus 47 ~i~aIIpA~G--~SsR~~------~K~L~~i~GkPLL~~vi~~a~~~~~~~~VVV~-~~~e~I~~~~~~----~~v~vi~ 113 (293)
T PLN02917 47 RVVGIIPARF--ASSRFE------GKPLVHILGKPMIQRTWERAKLATTLDHIVVA-TDDERIAECCRG----FGADVIM 113 (293)
T ss_pred cEEEEEecCC--CCCCCC------CCCeeeECCEEHHHHHHHHHHcCCCCCEEEEE-CChHHHHHHHHH----cCCEEEe
Confidence 6789999999 999994 4999999999999999999874 44444 334566666543 2333333
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEE--ecCcccccccceEE--
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI--KVSAESASQFGELV-- 156 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~--~~~~~~~~~~~~v~-- 156 (410)
..+....|+++. ..+.+.+.. ..+.+++++||.++ ...+.++++.+.+. .++++++. ....+++..||.+.
T Consensus 114 ~~~~~~~GT~~~-~~a~~~l~~-~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv 190 (293)
T PLN02917 114 TSESCRNGTERC-NEALKKLEK-KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCV 190 (293)
T ss_pred CCcccCCchHHH-HHHHHhccC-CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEE
Confidence 333455576655 567777742 24679999999985 45589999977543 33333333 22336677888875
Q ss_pred EcCCCCcEEEEecC--C---C----CccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCe
Q 015259 157 ADPDTNELLHYTEK--P---E----TFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (410)
Q Consensus 157 ~d~~~~~v~~i~ek--p---~----~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (410)
.| ++++++.|..+ | + .....+.++|+|.|+.+.+..+.+.... +...+
T Consensus 191 ~~-~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~----n~e~e------------------ 247 (293)
T PLN02917 191 VD-NQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPT----PLQLE------------------ 247 (293)
T ss_pred EC-CCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCC----cccch------------------
Confidence 56 56776644422 1 1 1223578999999999988777643221 11222
Q ss_pred eeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHh
Q 015259 228 VRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 228 ~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~ 271 (410)
+.| +|+. .+.++..|.++..+.....|||++|+.++...+.+
T Consensus 248 ~yL-tdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~ 289 (293)
T PLN02917 248 EDL-EQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRE 289 (293)
T ss_pred hcc-HHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHH
Confidence 224 7776 33344478888766567789999999999987643
No 61
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.5e-18 Score=143.28 Aligned_cols=219 Identities=16% Similarity=0.257 Sum_probs=141.7
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|.||||||| .|+||.|+|.+.||+|+++.|+|||+++++.|.+ |+||+++..+++ +|+++ ++++.+.+.
T Consensus 1 ~nAIIlAAG--~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkd---Ky~vtLvyN 74 (231)
T COG4750 1 MNAIILAAG--LGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKD---KYDVTLVYN 74 (231)
T ss_pred CceEEEecc--cccccccccccCChHHHHhcCcccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHH---hcCeEEEeC
Confidence 689999999 9999999999999999999999999999999998 777777777775 45553 567777777
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCCc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTNE 163 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~~ 163 (410)
+......+..+++.+++++. +.-++.+|.....+ +...+.. .+....+ .+. ....+|- +..+ .+++
T Consensus 75 ~kY~~yNn~ySlyla~d~l~-----ntYiidsDnyl~kN---if~~~~~-~S~Yfav-~~~--~~tnEw~-l~~~-~~~k 140 (231)
T COG4750 75 PKYREYNNIYSLYLARDFLN-----NTYIIDSDNYLTKN---IFLTKES-HSKYFAV-YRS--GKTNEWL-LIYN-SDGK 140 (231)
T ss_pred chHHhhhhHHHHHHHHHHhc-----ccEEeccchHhhhh---hhhcCcc-cceEEEE-Eec--CCCceeE-EEEc-CCCc
Confidence 77778889999999999995 57788999876332 2222211 1221212 121 2233343 3344 5788
Q ss_pred EEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCCCc
Q 015259 164 LLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGKKQ 243 (410)
Q Consensus 164 v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~~~ 243 (410)
|.++.-. .....+.+|+..|+....+.+....+..-.+-...-++| +++...-++...
T Consensus 141 i~~v~Ig---g~~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yW-------------------d~v~~~ni~~l~ 198 (231)
T COG4750 141 ITRVDIG---GLNGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYW-------------------DTVPMENIKELD 198 (231)
T ss_pred EEEEEec---CcccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHH-------------------HHHHHHHHHHHh
Confidence 8888653 235678899999998765554443221110001111222 344433333334
Q ss_pred eeEEecc-ceeeecCCccchhhhhHHH
Q 015259 244 LYTYETM-DFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 244 i~~~~~~-g~~~~i~t~~~~~~an~~~ 269 (410)
++.-..+ +.-++++++++|.+....+
T Consensus 199 m~iek~~~n~IyE~DsLdelrk~~~~~ 225 (231)
T COG4750 199 MYIEKLNDNDIYEFDSLDELRKFEQKF 225 (231)
T ss_pred HhHHhhcCCceEEeccHHHHHhhhhhh
Confidence 4443333 4577788888887766543
No 62
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.77 E-value=3.3e-18 Score=152.83 Aligned_cols=158 Identities=19% Similarity=0.202 Sum_probs=103.3
Q ss_pred eeeeccchhccccCCCceeEEeccceeeecCCccchhhhhHHHHhhhhhcC--CC-------cccCC-CCCCCcEEccCe
Q 015259 227 FVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLYLAQFRLTS--PN-------LLASG-DGTKNATIIGDV 296 (410)
Q Consensus 227 ~~~l~~d~l~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~~~~~~~~--~~-------~~~~~-~~~~~~~i~~~~ 296 (410)
..+| +|.++.|++.+ ++...|||.|+ ++|+++|+.++....... .. +.... .-..++.+.+++
T Consensus 27 ~~~~-~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~~~~~~~~~~~~~~~~~vg~~~~I~~~a~I~g~v 99 (231)
T TIGR03532 27 QVDF-PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDYRIENDRRNSAIPLLDLKNINARIEPGAIIRDQV 99 (231)
T ss_pred cccc-chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcceEEeecccccccccccccccccEECCCCEEeCCe
Confidence 3446 89999998766 88888999999 999999999987643110 00 00000 001345556666
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEe---------eEECCCCEECCCcEEccCC
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTN---------AIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~~~~ 366 (410)
+|++++.|++++.|.++++||++|.|++++.|. +++||++|.|+.++.|.+ ++|+++|.||.++.|.++
T Consensus 100 ~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g- 178 (231)
T TIGR03532 100 IIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEG- 178 (231)
T ss_pred EECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCC-
Confidence 666666666666666667777777777777774 677777777777777753 667777777777766655
Q ss_pred CCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+.||+++.|++++++.+. +.+++++.
T Consensus 179 --------~~Ig~~~~IgagsvV~~d-i~~~~vv~ 204 (231)
T TIGR03532 179 --------VRVGKGAVVAAGAIVTED-VPPNTVVA 204 (231)
T ss_pred --------CEECCCCEECCCCEEccc-cCCCcEEE
Confidence 677777777776666432 34444443
No 63
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.74 E-value=6.6e-17 Score=158.35 Aligned_cols=242 Identities=17% Similarity=0.203 Sum_probs=150.8
Q ss_pred ceEEEEEecCCCCCCccccCCCC-CCccccccCC-ccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCc-
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLN-IPKPLFPLGG-QPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRI- 78 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~-~pK~llpi~g-~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~- 78 (410)
.|.+|||||| .|+||+|++.. .||+|+|+.| +|||+++++.+.. ++|++..+...+.+.+... +.
T Consensus 5 ~~~~vIlaGG--~GtRlwPlS~~~~PKq~l~l~~~~sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~~----~~~ 78 (478)
T PRK15460 5 KLYPVVMAGG--SGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQL----NKL 78 (478)
T ss_pred ceEEEEECCC--CccccccCCCCCCCcceeECCCCCCHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHhc----CCc
Confidence 5899999999 99999999987 7999999965 6999999999875 5444443444455444432 21
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccC---CCcEEEEcCCcccCCC--hHHHHHHHHh---cCCceEEEEEecCccccc
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDN---PSHIFLLNCDVCCSFP--LPEMLDAHRN---YGGMGTILVIKVSAESAS 150 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~---~~~~lvl~~D~i~~~~--l~~~l~~~~~---~~~~~~l~~~~~~~~~~~ 150 (410)
...++.++...+|+.++..+..++.+.. +.-++|+++|++.... |.+.++...+ .+..+|+...+. ...+
T Consensus 79 ~~~ii~EP~~rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~Pt--~PeT 156 (478)
T PRK15460 79 TENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPD--LPET 156 (478)
T ss_pred cccEEecCCCCChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecCCC--CCCC
Confidence 2356777888899998877666664321 2457899999986432 5555554322 244455554444 3456
Q ss_pred ccceEEEcCC-------C-CcEEEEecCCCC--------ccccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchh
Q 015259 151 QFGELVADPD-------T-NELLHYTEKPET--------FVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSF 213 (410)
Q Consensus 151 ~~~~v~~d~~-------~-~~v~~i~ekp~~--------~~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~ 213 (410)
.||++..+.. . ..|..|.|||+. ....+.|+|+|+|+.+. ++.|++.....-.....
T Consensus 157 gyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P~i~~~~~~------ 230 (478)
T PRK15460 157 GYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEK------ 230 (478)
T ss_pred CCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCHHHHHHHHH------
Confidence 7999987621 1 269999999973 22457899999999976 56666544322110000
Q ss_pred HhhhhhccCCCCCeeeeccch--------hccc--cCCCceeEEeccceeeecCCccchhhhh
Q 015259 214 EALQSATRNLTTDFVRLDQDI--------LSPL--AGKKQLYTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~d~--------l~~l--~~~~~i~~~~~~g~~~~i~t~~~~~~an 266 (410)
.+. ..+...+...+..+. +.+. -+..++.+.+.+-.|-|+|++.++.+..
T Consensus 231 -~~~--~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 231 -AMS--AVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred -HHH--hccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 000 000000000010111 1121 1234688888877799999998887743
No 64
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1.2e-15 Score=137.42 Aligned_cols=250 Identities=13% Similarity=0.158 Sum_probs=152.3
Q ss_pred eEEEEEecCCCCCCccccCC-CCCCccccccCC-ccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCcc
Q 015259 9 VVAVIMVGGPTKGTRFRPLS-LNIPKPLFPLGG-QPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIP 79 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt-~~~pK~llpi~g-~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~ 79 (410)
|.+|||||| .|+||+||+ +..||+++++.+ ++|++.+++++.. ++|+++... ..+.+-+.+... +..
T Consensus 2 ~~pvIlaGG--~GsRLWPLSR~~~PKQFl~L~~~~Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~~~--~~~ 77 (333)
T COG0836 2 MIPVILAGG--SGSRLWPLSRKDYPKQFLKLFGDLSLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEIDI--ENA 77 (333)
T ss_pred ceeEEEeCC--CccccCCcCcccCCccceeeCCCCcHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhhhh--ccc
Confidence 789999999 999999998 689999999955 8999999999887 777776543 233333332111 111
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccC-CCcEEEEcCCcccCCC--hHHHHHHHHh---cCCceEEEEEecCcccccccc
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDN-PSHIFLLNCDVCCSFP--LPEMLDAHRN---YGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~-~~~~lvl~~D~i~~~~--l~~~l~~~~~---~~~~~~l~~~~~~~~~~~~~~ 153 (410)
-.++.++....|+-++..+.-.+.+.. +.-++|+++|++.... +.+.++...+ .+..+|+...+. ...+.||
T Consensus 78 ~~illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~lVTfGI~Pt--~PeTGYG 155 (333)
T COG0836 78 AGIILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGIVTFGIPPT--RPETGYG 155 (333)
T ss_pred cceEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCEEEEecCCC--CCccCcc
Confidence 126677888899999987655554332 3347899999986433 6666665433 233444444333 3456799
Q ss_pred eEEEcCC-----CCcEEEEecCCCC--------ccccceeeeEEEEcHHH-HHHhhhcccccccchhhhccchhHhhhhh
Q 015259 154 ELVADPD-----TNELLHYTEKPET--------FVSDLINCGVYVFTPDI-FNAIQGVSSQRKDRENLRRVSSFEALQSA 219 (410)
Q Consensus 154 ~v~~d~~-----~~~v~~i~ekp~~--------~~~~l~~~Giy~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (410)
++..... ..+|.+|.|||+. ....+.|+|+|+|+... ++.++......-+. +..-+...++ ..+
T Consensus 156 YIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i~~~-~~~~~~~~~d-~~~ 233 (333)
T COG0836 156 YIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDIYCA-AEKAFEAAVD-ENS 233 (333)
T ss_pred eeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHHHHH-HHHHHhcccc-cch
Confidence 9987521 2379999999972 23467899999999976 56666543322110 0000000000 000
Q ss_pred ccCCCCCeeeeccchhccc--cCCCceeEEeccceeeecCCccchhhhh
Q 015259 220 TRNLTTDFVRLDQDILSPL--AGKKQLYTYETMDFWEQIKTPGMSLKCS 266 (410)
Q Consensus 220 ~~~~~~~~~~l~~d~l~~l--~~~~~i~~~~~~g~~~~i~t~~~~~~an 266 (410)
.+...+.|..+...-+.+. -+...+.+.+.+=.|-|+|++..+.+..
T Consensus 234 ~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~ 282 (333)
T COG0836 234 VRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVL 282 (333)
T ss_pred hcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHh
Confidence 0000111111212222222 2345788888877899999988776644
No 65
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.66 E-value=2.9e-15 Score=127.74 Aligned_cols=115 Identities=22% Similarity=0.290 Sum_probs=95.0
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~ 367 (410)
.++.+.++++|++++.|++++.|+++++||++|.|++++.|.+|+|++++.|++++.+.+++|++++.|++++.+.+...
T Consensus 28 ~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~ 107 (163)
T cd05636 28 SGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRF 107 (163)
T ss_pred CCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCc
Confidence 35667778889999999999999888999999999999999999999999999999999999999999999998865211
Q ss_pred CC----------------cceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 368 FN----------------AKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 368 ~~----------------~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
.+ ...+ ++|+++++||.++.+ ++++|++++.|..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~iIg~~~~ig~~~~i~~g~~ig~~~~i~ag 159 (163)
T cd05636 108 DDKPVKVRLKGERVDTGRRKLG-AIIGDGVKTGINVSLNPGVKIGPGSWVYPG 159 (163)
T ss_pred CCcceEEEecCcceecCCcccC-cEEcCCeEECCCcEECCCcEECCCCEECCC
Confidence 00 0123 899999999999988 58888888888764
No 66
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.60 E-value=2.3e-14 Score=121.01 Aligned_cols=106 Identities=20% Similarity=0.318 Sum_probs=95.7
Q ss_pred CcEEccCeEECCCCEECCCcEECC---CcEECCCcEECCCCEE-----eeeEECCCCEECCCCEEEeeEECCCCEECCCc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGP---NVSISANARIGAGVRL-----ISCIILDGVEIMENAVVTNAIVGWKSSIGRWS 360 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 360 (410)
++.+.++++|++++.|+++|.|.+ .+.||++|.|+++|.| .+++|+++|.|++++.+.+++|++++.|+.++
T Consensus 12 ~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~ 91 (155)
T cd04745 12 TAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRNALVGMNA 91 (155)
T ss_pred CCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCCCEECCCC
Confidence 566778899999999999999985 5899999999999999 56999999999999999999999999999999
Q ss_pred EEccCCCCCcceeeeEECCCCEECCCcEEc-ceEEcCCcEEccc
Q 015259 361 RVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNVS 403 (410)
Q Consensus 361 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~v~~~~~v~~~ 403 (410)
.|.++ +.|+++++|++++.+. +..|++++++..+
T Consensus 92 ~I~~g---------~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~ 126 (155)
T cd04745 92 VVMDG---------AVIGEESIVGAMAFVKAGTVIPPRSLIAGS 126 (155)
T ss_pred EEeCC---------CEECCCCEECCCCEeCCCCEeCCCCEEecC
Confidence 99987 9999999999999994 6788888888544
No 67
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.60 E-value=1.5e-14 Score=120.12 Aligned_cols=109 Identities=29% Similarity=0.358 Sum_probs=96.0
Q ss_pred CCcEEccCeEECCCCEECCCcEECC---CcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEEeeEECCCCEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGP---NVSISANARIGAGVRLI-----SCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (410)
+++.+.+++.|++++.|+++++|++ ...||++|.|.++|+|. .+.||++|+||+++.|..|+|+++|.||.+
T Consensus 22 ~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHGc~Ig~~~lIGmg 101 (176)
T COG0663 22 PSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHGCTIGDNVLIGMG 101 (176)
T ss_pred CCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEEeEECCCcEEecC
Confidence 4788889999999999999999994 57899999999999997 589999999999999999999999999999
Q ss_pred cEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcccCC
Q 015259 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSVH 405 (410)
Q Consensus 360 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~~~ 405 (410)
+.|.++ +.||++|.||+|+.++...+.|...+.-..|
T Consensus 102 A~vldg---------a~IG~~~iVgAgalV~~~k~~p~~~L~~G~P 138 (176)
T COG0663 102 ATVLDG---------AVIGDGSIVGAGALVTPGKEIPGGSLVVGSP 138 (176)
T ss_pred ceEeCC---------cEECCCcEEccCCcccCCcCCCCCeEeecCc
Confidence 999998 9999999999999997665555544444444
No 68
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.59 E-value=3.1e-14 Score=121.42 Aligned_cols=92 Identities=23% Similarity=0.312 Sum_probs=86.0
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~ 366 (410)
.++.+.++++|++++.|++++.|.++++||++|.|++++.|. +++|+++|.|++++.|.+|+|++++.|+.++.+.+
T Consensus 10 ~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~-- 87 (163)
T cd05636 10 EGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGD-- 87 (163)
T ss_pred CCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEec--
Confidence 467888999999999999999999999999999999999997 69999999999999999999999999999999877
Q ss_pred CCCcceeeeEECCCCEECCCcEE
Q 015259 367 DFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
++|++++.|++++++
T Consensus 88 --------siIg~~~~I~~~~~i 102 (163)
T cd05636 88 --------SVLGENVNLGAGTIT 102 (163)
T ss_pred --------CEECCCCEECCCcEE
Confidence 889999999888876
No 69
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.58 E-value=3.9e-14 Score=124.30 Aligned_cols=104 Identities=24% Similarity=0.376 Sum_probs=88.0
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~ 367 (410)
.+..+.++++|++++.|++++.|.+++.||++|.|++++.|.++.|+++|.|++++.|.+++|++++.|++++.|..+
T Consensus 8 ~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~-- 85 (193)
T cd03353 8 ETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPG-- 85 (193)
T ss_pred CeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCc--
Confidence 467788899999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CCcceeeeEECCCCEECCCcEEcceEEcCCcEE
Q 015259 368 FNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 400 (410)
Q Consensus 368 ~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v 400 (410)
++|++++.|++++.++++.+++++.+
T Consensus 86 -------~~Ig~~~~Ig~~~~i~~s~ig~~~~i 111 (193)
T cd03353 86 -------TVLGEGVHIGNFVEIKKSTIGEGSKA 111 (193)
T ss_pred -------cEECCCCEECCcEEEecceEcCCCEe
Confidence 67777777777666655555554433
No 70
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.57 E-value=5.9e-14 Score=119.30 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=93.7
Q ss_pred CcEEccCeEECCCCEECCCcEEC---CCcEECCCcEECCCCEEee-----------eEECCCCEECCCCEEEeeEECCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIG---PNVSISANARIGAGVRLIS-----------CIILDGVEIMENAVVTNAIVGWKS 354 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~-----------~~i~~~~~i~~~~~i~~~~i~~~~ 354 (410)
++.+.++++||+++.|++++.|. +.+.||++|.|+++|.|.+ +.||+++.+..++.|.+++|+++|
T Consensus 11 ~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~ 90 (164)
T cd04646 11 ESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNN 90 (164)
T ss_pred CCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCC
Confidence 56677889999999999999985 4689999999999999975 468999999999999999999999
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
+|+.++.|.++ +.||++++||++++| ++..+++++++..+
T Consensus 91 ~Ig~~a~I~~g---------v~Ig~~~~IgagsvV~~~~~i~~~~vi~g~ 131 (164)
T cd04646 91 VFESKSFVGKN---------VIITDGCIIGAGCKLPSSEILPENTVIYGA 131 (164)
T ss_pred EEeCCCEECCC---------CEECCCCEEeCCeEECCCcEECCCeEEeCC
Confidence 99999999988 999999999999999 45688888887664
No 71
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.57 E-value=3.3e-14 Score=123.28 Aligned_cols=107 Identities=19% Similarity=0.262 Sum_probs=94.6
Q ss_pred CCcEEccCeEECCCCEECCCcEECC---CcEECCCcEECCCCEE-----eeeEECCCCEECCCCEEEeeEECCCCEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGP---NVSISANARIGAGVRL-----ISCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~---~~~ig~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (410)
.++.+.++++||+++.|+++|+|.+ .++||++|.||++|.| .+|+|+++++|++++.|.+|+|+++|.||.+
T Consensus 19 ~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~g 98 (192)
T TIGR02287 19 PTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMN 98 (192)
T ss_pred CCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCC
Confidence 3667788899999999999999974 5899999999999999 4699999999999999999999999999999
Q ss_pred cEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 360 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
+.+.++ ++||+++.|++++.+ ++..|.+++.+..+
T Consensus 99 a~I~~g---------~~IG~~s~Vgags~V~~~~~ip~~~l~~G~ 134 (192)
T TIGR02287 99 AVVMDG---------AVIGENSIVAASAFVKAGAEMPAQYLVVGS 134 (192)
T ss_pred cccCCC---------eEECCCCEEcCCCEECCCCEECCCeEEEcc
Confidence 999887 999999999999998 46677888777543
No 72
>PLN02296 carbonate dehydratase
Probab=99.57 E-value=4.7e-14 Score=128.28 Aligned_cols=107 Identities=20% Similarity=0.223 Sum_probs=95.9
Q ss_pred CCcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEe-----------eeEECCCCEECCCCEEEeeEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLI-----------SCIILDGVEIMENAVVTNAIVGWK 353 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~~i~~~ 353 (410)
.++.+.+++.||+++.|+++|+|.+. +.||++|.|+++|.|. +++||++|+|+++|+|.+|+|+++
T Consensus 63 p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd~ 142 (269)
T PLN02296 63 PSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVEDE 142 (269)
T ss_pred CCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECCC
Confidence 46677788999999999999999865 5999999999999995 589999999999999999999999
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
|.||.++.|.++ +.|++++.|+++++| ++..|++++++..+
T Consensus 143 v~IG~ga~I~~g---------v~Ig~~a~IgagSvV~~~~~I~~~~~~~G~ 184 (269)
T PLN02296 143 AFVGMGATLLDG---------VVVEKHAMVAAGALVRQNTRIPSGEVWAGN 184 (269)
T ss_pred cEECCCcEECCC---------eEECCCCEECCCCEEecCCEeCCCeEEecc
Confidence 999999999988 999999999999999 46678898887553
No 73
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.55 E-value=1.2e-13 Score=114.33 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=88.1
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE---------eeEECCCCEECC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT---------NAIVGWKSSIGR 358 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---------~~~i~~~~~i~~ 358 (410)
++.+.++++|++++.|.+++.+..++.||++|.|++++.|. +++|+++|.|+.++.|. .++|++++.|+.
T Consensus 7 ~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~ 86 (139)
T cd03350 7 GAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGA 86 (139)
T ss_pred CcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCcccccccCCeEECCCCEECC
Confidence 45666677777777777777777777888888888888885 67888888888888885 378999999999
Q ss_pred CcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEE---cCCcEEcccCCCc
Q 015259 359 WSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIV---LPNKTLNVSVHQE 407 (410)
Q Consensus 359 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v---~~~~~v~~~~~~~ 407 (410)
++.|.++ +.||+++.|+++++| ++..| +++++|.+++|++
T Consensus 87 ~a~I~~g---------v~Ig~~~~Ig~g~~V~~~~~I~~~~~~~~v~~~~~~~ 130 (139)
T cd03350 87 NCEVVEG---------VIVGKGAVLAAGVVLTQSTPIYDRETGEIYYGRVPPG 130 (139)
T ss_pred CCEECCC---------CEECCCCEEcCCCEEcCCeEecccCcccEEecccCCC
Confidence 9999887 889999999998888 23333 5889999999987
No 74
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1e-14 Score=141.00 Aligned_cols=96 Identities=31% Similarity=0.413 Sum_probs=90.2
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~ 368 (410)
++.+...+.||.++.|+.+++|. |++||+||.||.|++|.+|.||+||+||+||+|++|+||++|.|+++|.+.++
T Consensus 327 ~~~v~~~~~ig~gT~Ig~g~~I~-NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g--- 402 (673)
T KOG1461|consen 327 SVIVGANVVIGAGTKIGSGSKIS-NSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPG--- 402 (673)
T ss_pred hccccceEEecccccccCCCeee-cceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCC---
Confidence 57788899999999999999999 99999999999999999999999999999999999999999999999999988
Q ss_pred CcceeeeEECCCCEECCCcEEc-ceEE
Q 015259 369 NAKLGITILGEAVGVEDEVVVT-NSIV 394 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v~-~~~v 394 (410)
|+||-++++|++-+++ ++.|
T Consensus 403 ------~vl~~~VVv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 403 ------SVLGFGVVVGRNFVLPKNSKV 423 (673)
T ss_pred ------cEEeeeeEeCCCccccccccc
Confidence 9999999999999994 5454
No 75
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.55 E-value=3.2e-13 Score=122.24 Aligned_cols=212 Identities=16% Similarity=0.118 Sum_probs=131.7
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
+||+|+| .|+||. +|+|++++|+|||.|+++.+.. |+|++. .+.+.+++.+ ++.++.....
T Consensus 2 ~iIpA~g--~s~R~~------~K~L~~l~GkPli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~----~g~~~v~~~~ 67 (238)
T TIGR00466 2 VIIPARL--ASSRLP------GKPLEDIFGKPMIVHVAENANESGADRCIVATD--DESVAQTCQK----FGIEVCMTSK 67 (238)
T ss_pred EEEecCC--CCCCCC------CCeecccCCcCHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH----cCCEEEEeCC
Confidence 7999999 999994 6999999999999999999865 666654 3345555443 3433322222
Q ss_pred CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCc-ccc--cccceEEEcCC
Q 015259 86 DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSA-ESA--SQFGELVADPD 160 (410)
Q Consensus 86 ~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~-~~~--~~~~~v~~d~~ 160 (410)
....|+ +.+..+.+.+.....+.++++.||.++ ...+.++++.+.+...+++.+..+... +.. .....+..+ +
T Consensus 68 ~~~~Gt-~r~~~~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~-~ 145 (238)
T TIGR00466 68 HHNSGT-ERLAEVVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLD-S 145 (238)
T ss_pred CCCChh-HHHHHHHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeC-C
Confidence 333343 344444443321113568889999985 345889998875555566666666521 111 112233445 5
Q ss_pred CCcEEEEecCCC-----------Cccc--cceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCe
Q 015259 161 TNELLHYTEKPE-----------TFVS--DLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDF 227 (410)
Q Consensus 161 ~~~v~~i~ekp~-----------~~~~--~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (410)
+++.+.|.+.+- .+.. .+...|+|.|+++.++.+........+ .
T Consensus 146 ~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le-----------------------~ 202 (238)
T TIGR00466 146 QGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLE-----------------------E 202 (238)
T ss_pred CCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCccc-----------------------c
Confidence 667766655411 1111 456899999999999887764332211 0
Q ss_pred eeeccchhccccCCCceeEEeccce-eeecCCccch
Q 015259 228 VRLDQDILSPLAGKKQLYTYETMDF-WEQIKTPGMS 262 (410)
Q Consensus 228 ~~l~~d~l~~l~~~~~i~~~~~~g~-~~~i~t~~~~ 262 (410)
.+- -+-|+.|-.+.+|.+...++. -..||||+|+
T Consensus 203 ~e~-leqlr~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 203 IEK-LEQLRVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred cch-hHHHhhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 111 355666666778988887655 4589999987
No 76
>PLN02472 uncharacterized protein
Probab=99.55 E-value=7.5e-14 Score=125.25 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=96.8
Q ss_pred CCcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEe-----------eeEECCCCEECCCCEEEeeEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLI-----------SCIILDGVEIMENAVVTNAIVGWK 353 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~i~~~~i~~~ 353 (410)
.++.+.++++|++++.|+++++|.++ .+||++|.|+++|.|. +++||++|+||++|.|.+|+|+++
T Consensus 70 p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~ 149 (246)
T PLN02472 70 PNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPE 149 (246)
T ss_pred CCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCC
Confidence 46778888999999999999998864 7899999999999994 589999999999999999999999
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
|.||.++.|..+ ++|++++.|++++.+ ++..|.++.++..+
T Consensus 150 v~IG~~svI~~g---------avIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~ 191 (246)
T PLN02472 150 CIIGQHSILMEG---------SLVETHSILEAGSVLPPGRRIPTGELWAGN 191 (246)
T ss_pred CEECCCCEECCC---------CEECCCCEECCCCEECCCCEeCCCCEEEec
Confidence 999999999998 999999999999999 57889999888754
No 77
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.54 E-value=9.1e-14 Score=122.06 Aligned_cols=112 Identities=20% Similarity=0.305 Sum_probs=88.5
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCc-----
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNA----- 370 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~----- 370 (410)
..+++++.|+++|.|. ++.||++++|+++|.|.+++||++|+|+.++.+.+++||++|.|+++++|.... |+.
T Consensus 3 ~~~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~-h~~~~~s~ 80 (204)
T TIGR03308 3 VLLSPEPTLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATN-HPMERPTL 80 (204)
T ss_pred cccCCCCeECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCC-CCCCcccc
Confidence 3456677777777775 689999999999999999999999999999999999999999999999998642 211
Q ss_pred ------------------------ceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 371 ------------------------KLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 371 ------------------------~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
..+.++||++++||.++++ ++++|++|++|..++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~ 150 (204)
T TIGR03308 81 HHFTYRAAMYFDDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTI 150 (204)
T ss_pred cccccccccccccccccccccccccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcE
Confidence 1133778888888888777 56777777777777877654
No 78
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.54 E-value=1.3e-13 Score=125.57 Aligned_cols=97 Identities=26% Similarity=0.346 Sum_probs=47.1
Q ss_pred ccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCC---
Q 015259 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGD--- 367 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~--- 367 (410)
.+.+.+++++.|+++++|++++.||++|.|+++|.|+ ++.||++|.|..++.|. ++.||++|.|++++.|+...+
T Consensus 109 ~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a 188 (338)
T COG1044 109 DPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYA 188 (338)
T ss_pred cCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccc
Confidence 3333444444444444444444444444444444443 34445555555555555 355555555555555555322
Q ss_pred -------CCcceeeeEECCCCEECCCcEE
Q 015259 368 -------FNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 368 -------~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.-...|.++|+|+|.||++++|
T Consensus 189 ~~~~g~~Ki~q~g~V~Igd~VeIGanT~I 217 (338)
T COG1044 189 GTAIGWVKIPQIGRVIIGDDVEIGANTTI 217 (338)
T ss_pred cccCCceEcceeceEEECCceEEccccee
Confidence 1122345666666666666666
No 79
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.53 E-value=8.6e-14 Score=127.27 Aligned_cols=118 Identities=16% Similarity=0.075 Sum_probs=61.2
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-------------eeEECCCCEECCCCEEEe--------eE
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVTN--------AI 349 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~--------~~ 349 (410)
.+.++++|++++.|+++|.|.+++.||++|+|++++.|. +++||++|.|+++|+|.. ++
T Consensus 25 ~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~ 104 (254)
T cd03351 25 VIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHRGTAQGGGVTR 104 (254)
T ss_pred EECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEeccccCCCCceE
Confidence 333444444444444444444455555555555555553 345555555555555531 44
Q ss_pred ECCCCEECCCcEEccCCC---------CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCcc
Q 015259 350 VGWKSSIGRWSRVQAEGD---------FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEI 408 (410)
Q Consensus 350 i~~~~~i~~~~~i~~~~~---------~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~ 408 (410)
||++|.|++++.|...+. ...-.+.++||++|+|+.++.+ ++++|++++.|..++++..
T Consensus 105 IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~ 179 (254)
T cd03351 105 IGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYV 179 (254)
T ss_pred ECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeeecCCCe
Confidence 444444444444432100 0000112778888888877777 5666777777777776543
No 80
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.53 E-value=1.2e-13 Score=120.17 Aligned_cols=106 Identities=22% Similarity=0.265 Sum_probs=83.3
Q ss_pred CCcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEe-----eeEECCCCEECCCCEEEeeEECCCCEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLI-----SCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (410)
.++.+.+++.||+++.|+++|+|.++ ++|+++|.|+++|.|. +++|++++.|++++.+.+++|+++|.||.+
T Consensus 21 ~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~v~IG~g 100 (196)
T PRK13627 21 PSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMN 100 (196)
T ss_pred CCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCCCEECcC
Confidence 35666677778888888888887643 5788888888888885 478889999998888888899999999999
Q ss_pred cEEccCCCCCcceeeeEECCCCEECCCcEEcc-eEEcCCcEEcc
Q 015259 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-SIVLPNKTLNV 402 (410)
Q Consensus 360 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~~v~~~~~v~~ 402 (410)
+.+.++ +.||+++.|++++.|.. ..+.+++++..
T Consensus 101 a~V~~g---------~~IG~~s~Vgags~V~~~~~ip~~~~~~G 135 (196)
T PRK13627 101 SVIMDG---------AVIGEESIVAAMSFVKAGFQGEKRQLLMG 135 (196)
T ss_pred CccCCC---------cEECCCCEEcCCCEEeCCcCcCCCcEEEe
Confidence 888887 88999999999888854 44666766543
No 81
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.53 E-value=1.2e-13 Score=126.42 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=72.5
Q ss_pred CcEEccCeEECCCCEECCCcEECC------------CcEECCCcEECCCCEEe--------eeEECCCCEECCCCEEE-e
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGP------------NVSISANARIGAGVRLI--------SCIILDGVEIMENAVVT-N 347 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~--------~~~i~~~~~i~~~~~i~-~ 347 (410)
++.+.+++.||+++.|++++.|++ +++||++|.|+++|.|. +++||++|.|++++.|. +
T Consensus 40 ~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~ 119 (254)
T TIGR01852 40 HVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHD 119 (254)
T ss_pred CCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccC
Confidence 344455555666666666666652 45666666666666664 34566666666666663 5
Q ss_pred eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 348 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
|+|++++.|+.++.+.++ ++||++++|+.++.+ ++++|+++++|..++++..+
T Consensus 120 ~~Ig~~~~i~~~~~i~~~---------~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~ 179 (254)
T TIGR01852 120 CVVGNHVILANNATLAGH---------VEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGL 179 (254)
T ss_pred CEECCCCEECCCCEECCC---------cEECCCcEEeccCEECCCcEECCCCEEeeeeeEeeecCCCcE
Confidence 666666666666666665 788888888887777 46677777777777776543
No 82
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.53 E-value=1.7e-13 Score=119.33 Aligned_cols=98 Identities=26% Similarity=0.393 Sum_probs=79.6
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEEE-----eeEECCCCEECCCcEEccCCC
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVVT-----NAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~~ 367 (410)
.+++++.|++++.|.+++.||++|.|+++|+|.. .+|+++|.|+++|+|. +++|++++.|++++.+.+
T Consensus 12 ~i~~~a~I~~~a~I~g~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g--- 88 (196)
T PRK13627 12 VVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHG--- 88 (196)
T ss_pred ccCCCeEECCCCEEECceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEee---
Confidence 5566677777777767788888888888888864 5789999999999886 489999999999998887
Q ss_pred CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccC
Q 015259 368 FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSV 404 (410)
Q Consensus 368 ~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~ 404 (410)
++||++|+||.++++ .+++|++|++|.+++
T Consensus 89 -------~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~ 125 (196)
T PRK13627 89 -------CVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGF 125 (196)
T ss_pred -------EEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCc
Confidence 888888888887776 567888888888866
No 83
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.52 E-value=6.9e-14 Score=128.11 Aligned_cols=119 Identities=16% Similarity=0.110 Sum_probs=68.2
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-------------eeEECCCCEECCCCEEEe--------eE
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVTN--------AI 349 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~--------~~ 349 (410)
.+.++++||+++.|++++.|.++++||++|+|++++.|+ .++||++|.|+++|.|.+ ++
T Consensus 28 ~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~ 107 (262)
T PRK05289 28 VIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRGTVQGGGVTR 107 (262)
T ss_pred EECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecccccCCCeeE
Confidence 334444444444444455555555566666666666664 255666666666666642 24
Q ss_pred ECCCCEECCCcEEccCCC---------CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 350 VGWKSSIGRWSRVQAEGD---------FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 350 i~~~~~i~~~~~i~~~~~---------~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
||+++.|+.++.|.+.+. .....+.++||++|+||.++.+ ++++|+++++|..++++..+
T Consensus 108 IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~~ 183 (262)
T PRK05289 108 IGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVL 183 (262)
T ss_pred ECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEECCCCEEeeecceeccCCCCeE
Confidence 555555544444443211 0011122777777777777766 57788888888999988764
No 84
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.52 E-value=3.1e-13 Score=113.67 Aligned_cols=105 Identities=24% Similarity=0.208 Sum_probs=93.8
Q ss_pred CcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEee-----eEECCCCEECCCCEEEeeEECCCCEECCCc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLIS-----CIILDGVEIMENAVVTNAIVGWKSSIGRWS 360 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 360 (410)
.+.+.+++.||+++.|++++.|.+. ++||++|.|+++|.|.. ++|++++.|++++.+.+++|++++.|+.++
T Consensus 12 ~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~ 91 (154)
T cd04650 12 TSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGNYVIVGMGA 91 (154)
T ss_pred CCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECCCCEEcCCC
Confidence 5667788999999999999998865 69999999999999985 899999999999999999999999999999
Q ss_pred EEccCCCCCcceeeeEECCCCEECCCcEEc-ceEEcCCcEEcc
Q 015259 361 RVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSIVLPNKTLNV 402 (410)
Q Consensus 361 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~v~~~~~v~~ 402 (410)
.+.++ ++|+++++|++++.+. +..++++.++..
T Consensus 92 ~i~~~---------~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G 125 (154)
T cd04650 92 ILLNG---------AKIGDHVIIGAGAVVTPGKEIPDYSLVLG 125 (154)
T ss_pred EEeCC---------CEECCCCEECCCCEECCCcEeCCCCEEec
Confidence 99887 8999999999999994 577888888644
No 85
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.51 E-value=1.8e-13 Score=115.52 Aligned_cols=100 Identities=27% Similarity=0.372 Sum_probs=78.4
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEE-----EeeEECCCCEECCCcEEccCCCC
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVV-----TNAIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i-----~~~~i~~~~~i~~~~~i~~~~~~ 368 (410)
|++++.|++++.|.+++.||++|.|+++|.|.+ ++||++|.|+++|+| .+++|++++.|+.++.+.+
T Consensus 3 i~~~~~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~---- 78 (155)
T cd04745 3 VDPSSFVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHG---- 78 (155)
T ss_pred cCCCeEECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEEC----
Confidence 456666777777777888888888888888864 889999999999999 4699999999999998876
Q ss_pred CcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcc--cCCCc
Q 015259 369 NAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNV--SVHQE 407 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~--~~~~~ 407 (410)
++||++++|+.++.+ .+++|+++++|.+ .+++.
T Consensus 79 ------~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~ 120 (155)
T cd04745 79 ------CTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPR 120 (155)
T ss_pred ------CEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCC
Confidence 788888888777776 4666667776665 44544
No 86
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.51 E-value=1.9e-13 Score=124.45 Aligned_cols=107 Identities=26% Similarity=0.331 Sum_probs=65.1
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE--------------------Ee
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVV--------------------TN 347 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i--------------------~~ 347 (410)
+..|.+++.||+++.|+++|+|++++.||++|+|+++++|. ++.||++|.|+++++| .+
T Consensus 123 ~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a~~~~g~~Ki~q~g~ 202 (338)
T COG1044 123 NVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYAGTAIGWVKIPQIGR 202 (338)
T ss_pred CeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEecCcEECCceEECCCCEEccCccccccccCCceEcceece
Confidence 34444555555555555555555566666666666666665 4777777777777777 25
Q ss_pred eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEE
Q 015259 348 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTL 400 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v 400 (410)
.+|+++|.||.+++|..+ -++.++|++++.|.+-+.| ++|.||.++.|
T Consensus 203 V~Igd~VeIGanT~Idrg-----a~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I 251 (338)
T COG1044 203 VIIGDDVEIGANTTIDRG-----ALDDTVIGEGVKIDNLVQIGHNVRIGEHCII 251 (338)
T ss_pred EEECCceEEcccceeccc-----cccCceecCCcEEcceeEEccccEECCCcEE
Confidence 788899999999988875 2222455555555444444 34444444443
No 87
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.51 E-value=1.9e-13 Score=101.78 Aligned_cols=79 Identities=49% Similarity=0.924 Sum_probs=72.1
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEE
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITIL 377 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i 377 (410)
+++++.|++++.|+++++|+++|+|++++.|.++++++++.|++++.|.++++++++.+++++++..+ ++|
T Consensus 2 i~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~~---------~~i 72 (80)
T cd05824 2 IDPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLENV---------TVL 72 (80)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEecC---------EEE
Confidence 57788888888888899999999999999999999999999999999999999999999999999887 889
Q ss_pred CCCCEECC
Q 015259 378 GEAVGVED 385 (410)
Q Consensus 378 ~~~~~i~~ 385 (410)
|+++.|+.
T Consensus 73 g~~~~i~~ 80 (80)
T cd05824 73 GDDVTIKD 80 (80)
T ss_pred CCceEECC
Confidence 98888763
No 88
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.51 E-value=1.8e-13 Score=124.18 Aligned_cols=35 Identities=9% Similarity=0.179 Sum_probs=27.9
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||++++|+.++.+ .++.|+++++|+.++|+..+
T Consensus 138 v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~i 179 (255)
T PRK12461 138 VTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCM 179 (255)
T ss_pred eEECCCeEEeCCCEECCCCEECCCcEECCCceEeccCCCCeE
Confidence 788888888888777 56678888888889988765
No 89
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.51 E-value=2.3e-13 Score=124.48 Aligned_cols=111 Identities=22% Similarity=0.238 Sum_probs=76.4
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-------------eeEECCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-------------NAIVGWKS 354 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~~~~ 354 (410)
++.+.+.+.|++++.|++++.|++++.||++|+|+++|.|. +++||++|.|+++++|. +++|+++|
T Consensus 5 ~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~ 84 (254)
T cd03351 5 TAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNN 84 (254)
T ss_pred CCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEECCCC
Confidence 45677777777777777888887788888888888888886 58888888888888885 57888888
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEc
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLN 401 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~ 401 (410)
.|++++.|..+.... .+.++||+++.|++++.| .+|+|+.+..|.
T Consensus 85 ~Ig~~~~I~~~~~~~--~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~ 130 (254)
T cd03351 85 TIREFVTIHRGTAQG--GGVTRIGNNNLLMAYVHVAHDCVIGNNVILA 130 (254)
T ss_pred EECCccEEeccccCC--CCceEECCCCEECCCCEECCCCEECCCcEEC
Confidence 888888887542110 012566666666666555 344444444443
No 90
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.51 E-value=3.7e-13 Score=128.82 Aligned_cols=201 Identities=13% Similarity=0.128 Sum_probs=130.8
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPV 80 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i 80 (410)
.++.+|||||| .|+||.. ..||+|++++|+|||+|+++.+.+ |+|++......+.+.+. ..+. .+
T Consensus 4 m~v~aIILAAG--~GsRmg~---~~pKqll~l~GkPll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~---~~~~-~v 74 (378)
T PRK09382 4 SDISLVIVAAG--RSTRFSA---EVKKQWLRIGGKPLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKAL---PEIK-FV 74 (378)
T ss_pred CcceEEEECCC--CCccCCC---CCCeeEEEECCeeHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhc---ccCC-eE
Confidence 46899999999 9999953 679999999999999999999975 66666544333222111 1111 13
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
.++. ...+..++++.+++.+. .+.+++..||.++ ...+..+++...+ ..+++...++ .++..|+....+
T Consensus 75 ~~v~--gG~~r~~SV~~gL~~l~---~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~~~pv--~Dtik~~~~tld 145 (378)
T PRK09382 75 TLVT--GGATRQESVRNALEALD---SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLPALPV--ADTLKRANETVD 145 (378)
T ss_pred EEeC--CCchHHHHHHHHHHhcC---CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEEEEEe--ccCcEEeeeEcC
Confidence 3332 33457889999999885 3678999999875 3347888776543 3456666666 555566654444
Q ss_pred CCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
.+.+..+ +.|+...+.. +++... +.+.+ +|....+
T Consensus 146 --R~~l~~~-QTPQ~f~~~~-----------l~~a~~------------------------------~~~~~-TDd~sl~ 180 (378)
T PRK09382 146 --REGLKLI-QTPQLSRTKT-----------LKAAAD------------------------------GRGDF-TDDSSAA 180 (378)
T ss_pred --cccEEEE-ECCCCCCHHH-----------HHHHHh------------------------------CCCCc-ccHHHHH
Confidence 3355555 5565432222 111111 01123 4555544
Q ss_pred cC-CCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 239 AG-KKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 239 ~~-~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
.. +.+|..++-++.|..|++|+|+..+...+.
T Consensus 181 ~~~G~~V~~v~g~~~n~KITtpeDL~~A~~~l~ 213 (378)
T PRK09382 181 EAAGGKVALVEGSEDLHKLTYKEDLKMADLLLS 213 (378)
T ss_pred HHcCCcEEEEECCCcccCCCCHHHHHHHHHHhc
Confidence 43 457888888889999999999999987553
No 91
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.51 E-value=1.7e-13 Score=102.28 Aligned_cols=79 Identities=27% Similarity=0.503 Sum_probs=60.5
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEE
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITIL 377 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i 377 (410)
|++++.|++++.|. ++.||++|.|++++.|.+++|++++.|++++.|.++++++++.|++++++.+ |+|
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~----------~ii 70 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKD----------CLV 70 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEcc----------CEE
Confidence 56667777777775 6777888888878888778888888888888888888888888888887776 777
Q ss_pred CCCCEECCCc
Q 015259 378 GEAVGVEDEV 387 (410)
Q Consensus 378 ~~~~~i~~~~ 387 (410)
|+++.|++++
T Consensus 71 ~~~~~i~~~~ 80 (81)
T cd04652 71 GSGYRVEAGT 80 (81)
T ss_pred CCCcEeCCCC
Confidence 7777777664
No 92
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.50 E-value=2.9e-13 Score=115.03 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=76.8
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEEee-----------EECCCCEECCCcEE
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVTNA-----------IVGWKSSIGRWSRV 362 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~~-----------~i~~~~~i~~~~~i 362 (410)
|++++.|++++.|.+++.||++|.|++++.|. .++||++|.|+++|.|.++ +|++++.+..++.|
T Consensus 2 ~~~~~~I~~~a~i~g~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i 81 (164)
T cd04646 2 IAPGAVVCQESEIRGDVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKC 81 (164)
T ss_pred cCCCcEECCCCEEcCceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEE
Confidence 56777777777777788888888888888884 4689999999999999754 56777777777777
Q ss_pred ccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEccc--CCCc
Q 015259 363 QAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVS--VHQE 407 (410)
Q Consensus 363 ~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~--~~~~ 407 (410)
.+ ++||++|+|++++++ .+|+|+++++|.++ +++.
T Consensus 82 ~~----------~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~ 125 (164)
T cd04646 82 EA----------LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPEN 125 (164)
T ss_pred Ee----------eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCC
Confidence 66 788888888877777 46677777777776 5554
No 93
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.50 E-value=6.4e-13 Score=119.42 Aligned_cols=201 Identities=17% Similarity=0.159 Sum_probs=127.5
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
++.+|||||| .|+||. +|+|++++|+|||+|+++.+.+ |+|++. .+.+.+++.+ ++..+.
T Consensus 1 ~~~~iIlA~G--~s~R~~------~K~l~~l~Gkpll~~~l~~l~~~~~~~~IvV~~~--~~~i~~~~~~----~~~~~~ 66 (223)
T cd02513 1 KILAIIPARG--GSKGIP------GKNIRPLGGKPLIAWTIEAALESKLFDRVVVSTD--DEEIAEVARK----YGAEVP 66 (223)
T ss_pred CeEEEEecCC--CCCCCC------CcccchhCCccHHHHHHHHHHhCCCCCEEEEECC--cHHHHHHHHH----hCCCce
Confidence 3679999999 999994 4999999999999999999974 555442 3344444432 233223
Q ss_pred EeeC----CCCCCcHHHHHHhHHHhccc--CCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccc
Q 015259 82 YLRE----DKPHGSAGALYNFRDLIMED--NPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFG 153 (410)
Q Consensus 82 ~i~~----~~~~g~~~~l~~~~~~l~~~--~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~ 153 (410)
+... ....|+.+++..+.+.+... ..+.++++.||.++ ...+..+++.+.+.+.+.++.+.+. .+...++
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~~~--~~~~~~~ 144 (223)
T cd02513 67 FLRPAELATDTASSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVTEF--HRFPWRA 144 (223)
T ss_pred eeCChHHCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEEec--CcCcHHh
Confidence 3321 33457889999988877521 13679999999975 4569999998877666766666554 2222233
Q ss_pred eEEEcCCCCcEEEEecC-----CCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCee
Q 015259 154 ELVADPDTNELLHYTEK-----PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFV 228 (410)
Q Consensus 154 ~v~~d~~~~~v~~i~ek-----p~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (410)
.+..+ ++..+..+.+. .+.+.....++|+|+++++.+.....
T Consensus 145 ~~~~~-~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~~~-------------------------------- 191 (223)
T cd02513 145 LGLDD-NGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLESNS-------------------------------- 191 (223)
T ss_pred eeecc-CCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhcCC--------------------------------
Confidence 33222 11122222121 12344556778999999987532110
Q ss_pred eeccchhccccCCCceeEEeccc-eeeecCCccchhhhhH
Q 015259 229 RLDQDILSPLAGKKQLYTYETMD-FWEQIKTPGMSLKCSG 267 (410)
Q Consensus 229 ~l~~d~l~~l~~~~~i~~~~~~g-~~~~i~t~~~~~~an~ 267 (410)
.+ ++++..+.... ...+|+|++|+..+..
T Consensus 192 -----~~-----g~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 192 -----FF-----GGKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred -----cc-----CCCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 01 34666665544 5889999999877643
No 94
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.50 E-value=2.4e-13 Score=101.02 Aligned_cols=79 Identities=37% Similarity=0.511 Sum_probs=67.4
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeE
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITI 376 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~ 376 (410)
+|++++.|++++.|.+ +.||++|+|++++.|.+++|+++|+|++++.|.+++|++++.|++++++.++ ++
T Consensus 1 ~ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~---------~~ 70 (79)
T cd03356 1 LIGESTVIGENAIIKN-SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNL---------CI 70 (79)
T ss_pred CccCCcEECCCCEEeC-CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCC---------eE
Confidence 4678888888888875 8899999999999999999999999999999999999999999998888876 78
Q ss_pred ECCCCEECC
Q 015259 377 LGEAVGVED 385 (410)
Q Consensus 377 i~~~~~i~~ 385 (410)
+++++.|++
T Consensus 71 ig~~~~i~~ 79 (79)
T cd03356 71 IGDDVVVED 79 (79)
T ss_pred ECCCeEECc
Confidence 888877763
No 95
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.50 E-value=1.9e-13 Score=118.57 Aligned_cols=96 Identities=27% Similarity=0.402 Sum_probs=78.5
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEE-----eeEECCCCEECCCcEEccCCC
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVT-----NAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~~ 367 (410)
.|++++.|++++.|.+++.||++|.|+++|.|. ..+||++|.|+++|+|. +++|++++.|++++.|.+
T Consensus 10 ~i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~--- 86 (192)
T TIGR02287 10 VVHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHG--- 86 (192)
T ss_pred cCCCCcEECCCCEEEeeEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcC---
Confidence 567777777777777788888888888888886 47899999999999993 699999999999999988
Q ss_pred CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcc
Q 015259 368 FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNV 402 (410)
Q Consensus 368 ~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~ 402 (410)
|+|++++.||.++++ .+|.|++++.|.+
T Consensus 87 -------siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~ 121 (192)
T TIGR02287 87 -------CIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKA 121 (192)
T ss_pred -------CEECCCCEECCCcccCCCeEECCCCEEcCCCEECC
Confidence 888888888877766 4556666666665
No 96
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.49 E-value=4.9e-13 Score=117.33 Aligned_cols=120 Identities=15% Similarity=0.215 Sum_probs=70.0
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEcc---
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA--- 364 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~--- 364 (410)
.+.+.+++.|++++.|++++.|. ++.||++|.|++++.|.+++|++++.|+++++|. +++|++++.|++++.+.+
T Consensus 27 ~a~i~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~i 105 (193)
T cd03353 27 GVILEGKTVIGEDCVIGPNCVIK-DSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTI 105 (193)
T ss_pred CCEEeCcCEECCCCEECCCcEEe-CCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceE
Confidence 34444555555555555555555 3466666666666666666666666666666665 455555554444333211
Q ss_pred -------------------------CCC----CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCcc
Q 015259 365 -------------------------EGD----FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEI 408 (410)
Q Consensus 365 -------------------------~~~----~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~ 408 (410)
+.- .......++||++++|+.++++ ++++|++|++|..++|+.-
T Consensus 106 g~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~ 185 (193)
T cd03353 106 GEGSKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGA 185 (193)
T ss_pred cCCCEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCC
Confidence 000 0000112677778888777665 6888999999999998875
Q ss_pred c
Q 015259 409 I 409 (410)
Q Consensus 409 ~ 409 (410)
+
T Consensus 186 ~ 186 (193)
T cd03353 186 L 186 (193)
T ss_pred E
Confidence 4
No 97
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.49 E-value=5.2e-13 Score=122.12 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=57.4
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-------------eeEECCCCEECCCCEEE--------ee
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVT--------NA 348 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~--------~~ 348 (410)
+.+.+++.|++++.|+++|.|.+++.||++|+|++++.|. +++||++|.|+++|.|. .+
T Consensus 23 ~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~ 102 (254)
T TIGR01852 23 CIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINRGTASGGGVT 102 (254)
T ss_pred CEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECCcccCCCCcE
Confidence 3344444444555555555555556666666666666664 45666666666666664 34
Q ss_pred EECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEc
Q 015259 349 IVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLN 401 (410)
Q Consensus 349 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~ 401 (410)
+||+++.|+.++.|.+. |.||++++|++++.+ .+++|++++.|.
T Consensus 103 ~IG~~~~I~~~~~I~~~---------~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig 147 (254)
T TIGR01852 103 RIGNNNLLMAYSHIAHD---------CVVGNHVILANNATLAGHVEVGDYAIIG 147 (254)
T ss_pred EECCCCEECCCCEEccC---------CEECCCCEECCCCEECCCcEECCCcEEe
Confidence 55666666655555443 666666666666655 334444444333
No 98
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.49 E-value=3.2e-13 Score=122.16 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=86.5
Q ss_pred CCcEEccCeEECCCCEECCCcEEC-----CCcEECCCcEECCCCEEee-eEECCCCEECCCCEEE---------eeEECC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIG-----PNVSISANARIGAGVRLIS-CIILDGVEIMENAVVT---------NAIVGW 352 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~~ 352 (410)
.+..+.+++++++++.|++++.|. .++.||++|.|+.++.|++ ++||++|+|+.++.|. +++|++
T Consensus 102 ~~~rI~p~a~V~~ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I~~gv~I~g~~~~~~~~~viIgD 181 (272)
T PRK11830 102 AGVRVVPGAVVRRGAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIED 181 (272)
T ss_pred CCcEEcCCeEECCCCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEECCCccCCCCccccCcCCeEEcC
Confidence 356677777788888887777776 3456777777777777764 5788888888887765 389999
Q ss_pred CCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEc---CCcEEcccCCCcc
Q 015259 353 KSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVL---PNKTLNVSVHQEI 408 (410)
Q Consensus 353 ~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~---~~~~v~~~~~~~~ 408 (410)
+|.||.++.|..+ ++||++++|++++.| +++.|+ +|.++..++|+.-
T Consensus 182 nv~IGa~s~I~~G---------v~IGdgavIgag~vV~~gt~I~~~~~g~v~~g~vp~~s 232 (272)
T PRK11830 182 NCFIGARSEVVEG---------VIVEEGSVLGMGVFLGQSTKIYDRETGEVHYGRVPAGS 232 (272)
T ss_pred CCEECCCCEEcCC---------CEECCCCEEcCCCEEcCCeEECcCCCCcEEeeecCCCc
Confidence 9999999999877 999999999999999 577788 4667776777654
No 99
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.49 E-value=6.3e-13 Score=125.08 Aligned_cols=102 Identities=24% Similarity=0.323 Sum_probs=73.3
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~ 365 (410)
.++.+.+.+.|++++.|++++.|++++.||++|+|++++.|+ +++||++|.|++++.|. +++|+++|.|++++.|+..
T Consensus 96 p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~ 175 (324)
T TIGR01853 96 PTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIGSD 175 (324)
T ss_pred CCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECCCCEECCCCEECCCcEECCC
Confidence 356677777777777777777777777777788887777774 67788888888888887 7888888888888888642
Q ss_pred CC-----------CCcceeeeEECCCCEECCCcEE
Q 015259 366 GD-----------FNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 366 ~~-----------~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.+ .-.+.|.++||+++.||+++++
T Consensus 176 gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I 210 (324)
T TIGR01853 176 GFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTI 210 (324)
T ss_pred CccceeccCCcceecCccceEEECCCcEECCCCEE
Confidence 11 0112245777777777777766
No 100
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.49 E-value=1.7e-13 Score=116.61 Aligned_cols=115 Identities=23% Similarity=0.401 Sum_probs=88.0
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
||||||| .|+||+. ||+|++++|+|||+|+++.+.+ |+|++.+ +.+.+++.. ++ +.++..
T Consensus 1 ~vILa~G--~s~Rmg~-----~K~l~~i~g~~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~----~~--~~~v~~ 65 (160)
T PF12804_consen 1 AVILAAG--KSSRMGG-----PKALLPIGGKPLIERVLEALREAGVDDIVVVTGE--EEIYEYLER----YG--IKVVVD 65 (160)
T ss_dssp EEEEESS--SCGGGTS-----CGGGSEETTEEHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTT----TT--SEEEE-
T ss_pred CEEECCc--CcccCCC-----CccceeECCccHHHHHHHHhhccCCceEEEecCh--HHHHHHHhc----cC--ceEEEe
Confidence 6999999 9999975 9999999999999999999987 7777776 344444432 23 454443
Q ss_pred -CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEE
Q 015259 86 -DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI 142 (410)
Q Consensus 86 -~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~ 142 (410)
....|++++++.+...+. ..++|++++||+++ ...+..+++.+.+.+.++++...
T Consensus 66 ~~~~~G~~~sl~~a~~~~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 66 PEPGQGPLASLLAALSQLP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPVF 123 (160)
T ss_dssp STSSCSHHHHHHHHHHTST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ccccCChHHHHHHHHHhcc--cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEEE
Confidence 346899999999999873 25899999999975 34588999988766666555443
No 101
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.48 E-value=2.8e-13 Score=121.17 Aligned_cols=112 Identities=23% Similarity=0.237 Sum_probs=88.8
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcceee
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGI 374 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~ 374 (410)
+++.++.|++++.|.+++.||++++|++++.|. +++||++|.|+.++.|. +++|+++|.|+.++.|.+....+...+
T Consensus 82 ~vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~~~~~~~~~~- 160 (231)
T TIGR03532 82 LKNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAGVIEPPSAKP- 160 (231)
T ss_pred ccccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEccccccccCCC-
Confidence 578888888888888889999999999999986 68899999999999997 899999999999999975221111111
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
++||++|+||+++++ ++++|+++++|..++++..+
T Consensus 161 v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~v 202 (231)
T TIGR03532 161 VVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTV 202 (231)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcE
Confidence 677777777766666 57777888888888877654
No 102
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.48 E-value=9.1e-13 Score=112.58 Aligned_cols=104 Identities=29% Similarity=0.355 Sum_probs=88.1
Q ss_pred CcEEccCeEECCCCEECCCcEECC----CcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEE-eeEECCCCEECC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGP----NVSISANARIGAGVRLI-----SCIILDGVEIMENAVVT-NAIVGWKSSIGR 358 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~----~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~ 358 (410)
++.+.+++.+|+++.|++++.|.. ++.||++|.|++++.|. ++.||++|.|+.++.|. +++|+++|.||.
T Consensus 14 ~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~ 93 (167)
T cd00710 14 TAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDNCFIGF 93 (167)
T ss_pred CCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCCCEECC
Confidence 566777788888888888888874 47899999999999994 57899999999999998 499999999999
Q ss_pred CcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 359 WSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 359 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
++.|.+ +.||+++.|++++.+.++.|+++..|+.
T Consensus 94 ~~~I~~----------~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~ 127 (167)
T cd00710 94 RSVVFN----------AKVGDNCVIGHNAVVDGVEIPPGRYVPA 127 (167)
T ss_pred CCEEEC----------CEECCCCEEcCCCEEeCCEeCCCCEECC
Confidence 999986 8999999999999997666666666643
No 103
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.48 E-value=1.1e-12 Score=110.51 Aligned_cols=105 Identities=24% Similarity=0.314 Sum_probs=93.2
Q ss_pred CcEEccCeEECCCCEECCCcEECCC---cEECCCcEECCCCEEee-----eEECCCCEECCCCEEEeeEECCCCEECCCc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLIS-----CIILDGVEIMENAVVTNAIVGWKSSIGRWS 360 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~ 360 (410)
.+.+.+++++++++.|++++.|.++ ++||++|.|++++.|.. ++|++++.|+.+|.+.+++|++++.|+.++
T Consensus 11 ~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~ 90 (153)
T cd04645 11 NATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGDNCLIGMGA 90 (153)
T ss_pred CCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECCCCEECCCC
Confidence 5677788899999999999988854 69999999999999986 599999999999999999999999999999
Q ss_pred EEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEcc
Q 015259 361 RVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNV 402 (410)
Q Consensus 361 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~ 402 (410)
.+..+ ++|+++++|++++.+ ++..++++.++..
T Consensus 91 ~v~~~---------~~ig~~~~ig~~~~v~~~~~i~~~~~~~g 124 (153)
T cd04645 91 IILDG---------AVIGKGSIVAAGSLVPPGKVIPPGSLVAG 124 (153)
T ss_pred EEcCC---------CEECCCCEECCCCEECCCCEeCCCCEEeC
Confidence 99876 899999999999999 4567888777753
No 104
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.48 E-value=2e-13 Score=118.14 Aligned_cols=119 Identities=21% Similarity=0.281 Sum_probs=89.9
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|.+|||||| +|+||++ .||+|++++|+|||+|+++.+.. ++|++.++.+..+.++++. . ..+.
T Consensus 1 m~aIILAgG--~gsRmg~----~~K~Ll~i~GkplI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~----~--~~~~ 68 (183)
T TIGR00454 1 MDALIMAGG--KGTRLGG----VEKPLIEVCGRCLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSA----Y--KDYK 68 (183)
T ss_pred CeEEEECCc--cCccCCC----CCceEeEECCEEHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhc----C--cEEE
Confidence 689999999 9999975 69999999999999999999875 7777776666777777641 1 1222
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEE
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVI 142 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~ 142 (410)
.....|.+.++..+.+.+.. .++|+++.||+++ ...+..+++.+...+.....++.
T Consensus 69 -~~~g~G~~~~l~~al~~~~~--~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~ 126 (183)
T TIGR00454 69 -NASGKGYIEDLNECIGELYF--SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMI 126 (183)
T ss_pred -ecCCCCHHHHHHHHhhcccC--CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEe
Confidence 25667888888888775431 4789999999985 55688999987665555444443
No 105
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.47 E-value=5.6e-13 Score=119.29 Aligned_cols=92 Identities=13% Similarity=0.098 Sum_probs=66.9
Q ss_pred CcEEccCeEECCCCEECCCcEEC-----CCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE---------EeeEECCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIG-----PNVSISANARIGAGVRLI-SCIILDGVEIMENAVV---------TNAIVGWK 353 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~-----~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i---------~~~~i~~~ 353 (410)
+..+.+++.+++++.|++++.|. .++.||++|.|+.++.|+ ++.||+||+|+.++.| .+++|+++
T Consensus 100 ~~rv~p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG~~ep~~~~~ViIgDn 179 (269)
T TIGR00965 100 GFRVVPGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDN 179 (269)
T ss_pred CEEECCCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCCCcccCCCCCeEECCC
Confidence 34444445555555555554444 456677777777777776 4778888888877777 34799999
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
|.||.+|.|.++ ++||++++||+|++|
T Consensus 180 v~IGa~a~I~~G---------V~IG~gavIGaGavI 206 (269)
T TIGR00965 180 CFIGARSEIVEG---------VIVEEGSVISMGVFI 206 (269)
T ss_pred CEECCCCEEcCC---------CEECCCCEEeCCCEE
Confidence 999999999887 888888888888888
No 106
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.47 E-value=7.3e-13 Score=119.41 Aligned_cols=211 Identities=18% Similarity=0.207 Sum_probs=128.1
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCccE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPV 80 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~i 80 (410)
++.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.. ++|++.... +.+...... .. ..+
T Consensus 3 ~~~~iILAaG--~s~R~g~---~~~K~l~~~~g~pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~---~~-~~~ 73 (227)
T PRK00155 3 MVYAIIPAAG--KGSRMGA---DRPKQYLPLGGKPILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLA---KD-PKV 73 (227)
T ss_pred ceEEEEEcCc--cccccCC---CCCceeeEECCEEHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhc---cC-Cce
Confidence 5889999999 9999963 569999999999999999999854 666665443 233222211 11 223
Q ss_pred EEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 81 RYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 81 ~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
.++.. ..+.+++++.+.+.+.+ .+.++++.||.++ ...+.++++.+.+.+ .++...+. .+. +..+ +
T Consensus 74 ~~~~~--~~~~~~sv~~~l~~~~~--~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~--~~~--~~~v--~ 141 (227)
T PRK00155 74 TVVAG--GAERQDSVLNGLQALPD--DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAILAVPV--KDT--IKRS--D 141 (227)
T ss_pred EEeCC--cchHHHHHHHHHHhCCC--CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEEEEEec--ccc--EEEE--c
Confidence 44332 23578999999888732 3678999999985 355899999876543 33333333 111 2222 3
Q ss_pred CCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccc
Q 015259 159 PDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPL 238 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l 238 (410)
+++.+..+.+.. ..... -+.|.|+.+.+..+.+.... ..++ + .|....+
T Consensus 142 -~~g~~~~~~~r~---~~~~~-~~p~~f~~~~l~~~~~~~~~-------~~~~------------------~-~d~~~~~ 190 (227)
T PRK00155 142 -DGGGIVDTPDRS---GLWAA-QTPQGFRIELLREALARALA-------EGKT------------------I-TDDASAV 190 (227)
T ss_pred -CCCceeecCChH---Hheee-eCCccchHHHHHHHHHHHHh-------cCCC------------------c-CcHHHHH
Confidence 345566553221 11122 24778888776544321110 0111 1 2333222
Q ss_pred cC-CCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 239 AG-KKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 239 ~~-~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
.. +..+..++.+..+++|+|++||..+...+.
T Consensus 191 ~~~~~~i~~~~~~~~~~~Idt~~Dl~~ae~~~~ 223 (227)
T PRK00155 191 ERLGKPVRLVEGRYDNIKITTPEDLALAEAILK 223 (227)
T ss_pred HHcCCCeEEEecCcccccCCCHHHHHHHHHHHH
Confidence 22 346777776666889999999988876554
No 107
>PLN02296 carbonate dehydratase
Probab=99.47 E-value=5.1e-13 Score=121.50 Aligned_cols=102 Identities=18% Similarity=0.233 Sum_probs=77.7
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEEE-----------eeEECCCCEECCCcE
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVVT-----------NAIVGWKSSIGRWSR 361 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~ 361 (410)
.|++++.|.+++.|.+++.||++|.|+++|.|.. ++||++|.|+++|+|. +++|+++|.|+.+|.
T Consensus 54 ~I~~~~~I~p~A~V~G~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~av 133 (269)
T PLN02296 54 VVDKDAFVAPSASVIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAV 133 (269)
T ss_pred ccCCCCEECCCcEEEcceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCce
Confidence 4555556666666666777788888877877763 5799999999999995 589999999999998
Q ss_pred EccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEccc--CCCcc
Q 015259 362 VQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVS--VHQEI 408 (410)
Q Consensus 362 i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~--~~~~~ 408 (410)
|.+ |+||++|+||.+++| .+++|++|++|.++ +++..
T Consensus 134 I~g----------~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~ 179 (269)
T PLN02296 134 LHG----------CTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGE 179 (269)
T ss_pred ecC----------CEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCe
Confidence 876 777777777777766 56777788888777 45443
No 108
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.47 E-value=5.2e-13 Score=99.63 Aligned_cols=79 Identities=13% Similarity=0.241 Sum_probs=74.5
Q ss_pred ECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEc
Q 015259 316 ISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVL 395 (410)
Q Consensus 316 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~ 395 (410)
||++++|++++.|.+++|+++|.|++++.|.+++|++++.|+.+++|.+ ++|++++.|++++.+.+|+|+
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~----------svi~~~~~i~~~~~v~~~ii~ 71 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLEN----------CIIGNGAVIGEKCKLKDCLVG 71 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEec----------cEEeCCCEECCCCEEccCEEC
Confidence 7888889999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred CCcEEcccC
Q 015259 396 PNKTLNVSV 404 (410)
Q Consensus 396 ~~~~v~~~~ 404 (410)
+++.|..+.
T Consensus 72 ~~~~i~~~~ 80 (81)
T cd04652 72 SGYRVEAGT 80 (81)
T ss_pred CCcEeCCCC
Confidence 999998763
No 109
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.47 E-value=6.4e-13 Score=119.05 Aligned_cols=207 Identities=18% Similarity=0.228 Sum_probs=127.5
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
.+|||||| .|+||++ ..||+|+|++|+|||+|+++.+.. ++|++..........+.. ......+.++
T Consensus 2 ~~vILAaG--~s~R~~~---~~~K~l~~i~Gkpll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~--~~~~~~~~~~ 74 (218)
T cd02516 2 AAIILAAG--SGSRMGA---DIPKQFLELGGKPVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK--YGLSKVVKIV 74 (218)
T ss_pred EEEEECCc--ccccCCC---CCCcceeEECCeEHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh--cccCCCeEEE
Confidence 58999999 9999986 379999999999999999999875 666665544333222211 1112234444
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT 161 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~ 161 (410)
... .+..++++.+.+.+.....+.++++.||.++ ...+..+++.+.+.+. .+..... . .+....| ++
T Consensus 75 ~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~--~~~~~~~--~----~~~~~~~-~~ 143 (218)
T cd02516 75 EGG--ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA--AIPAVPV--T----DTIKRVD-DD 143 (218)
T ss_pred CCc--hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc--EEEEEec--c----ccEEEec-CC
Confidence 332 3567889999888731124678999999985 3458999998755432 2333322 1 1122345 56
Q ss_pred CcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccCC
Q 015259 162 NELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAGK 241 (410)
Q Consensus 162 ~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~~ 241 (410)
+.+..+.+. .......+. ++|+.+.+..+-..... ..+.+ +|....+.+.
T Consensus 144 g~~~~~~~r---~~~~~~~~P-~~f~~~~~~~~~~~~~~-------------------------~~~~~-td~~~~~~~~ 193 (218)
T cd02516 144 GVVVETLDR---EKLWAAQTP-QAFRLDLLLKAHRQASE-------------------------EGEEF-TDDASLVEAA 193 (218)
T ss_pred CceeecCCh---HHhhhhcCC-CcccHHHHHHHHHHHHh-------------------------cCCCc-CcHHHHHHHc
Confidence 788887664 224455566 78888876544332110 01112 4444433332
Q ss_pred -CceeEEeccceeeecCCccchhh
Q 015259 242 -KQLYTYETMDFWEQIKTPGMSLK 264 (410)
Q Consensus 242 -~~i~~~~~~g~~~~i~t~~~~~~ 264 (410)
.++........-.+|+||+||..
T Consensus 194 ~~~v~~v~~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 194 GGKVALVEGSEDNIKITTPEDLAL 217 (218)
T ss_pred CCCeEEEecCcccccCCCHHHHhh
Confidence 35666665555569999999854
No 110
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.47 E-value=8.8e-13 Score=120.82 Aligned_cols=112 Identities=21% Similarity=0.230 Sum_probs=81.5
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-------------eeEECCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-------------NAIVGWKS 354 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~~~~ 354 (410)
++.+.+.+.|++++.|+++|.|++++.||++|.|++++.|. +++||++|.|+++++|. .++||+++
T Consensus 8 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~ 87 (262)
T PRK05289 8 TAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNN 87 (262)
T ss_pred CCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEECCCC
Confidence 56677777777777777788888888888888888888886 68899999999999996 48999999
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEcc
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNV 402 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~ 402 (410)
.|++++.|..+... ..+.+.||+++.|++++.+ .+|+|+.+.++..
T Consensus 88 ~I~e~~~I~~~~~~--~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~ 134 (262)
T PRK05289 88 TIREFVTINRGTVQ--GGGVTRIGDNNLLMAYVHVAHDCVVGNHVILAN 134 (262)
T ss_pred EECCCeEEeccccc--CCCeeEECCceEECCCCEECCeEEECCCeEECC
Confidence 99999999874210 0112566666666666666 3555555554443
No 111
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.46 E-value=6e-13 Score=119.14 Aligned_cols=205 Identities=17% Similarity=0.204 Sum_probs=127.4
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCccEEE
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPVRY 82 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~i~~ 82 (410)
.+|||||| .|+||+. ..||+|++++|+|||+|+++.+.+ ++|++.... +.+...+.. . ..+.+
T Consensus 1 ~aiIlAaG--~s~R~~~---~~~K~l~~l~gkpll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~---~--~~~~~ 70 (217)
T TIGR00453 1 SAVIPAAG--RGTRFGS---GVPKQYLELGGRPLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVA---R--AVPKI 70 (217)
T ss_pred CEEEEcCc--ccccCCC---CCCccEeEECCeEHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhc---C--CcEEE
Confidence 37999999 9999975 569999999999999999999875 666665432 344433321 1 12344
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCC
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPD 160 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~ 160 (410)
+... .+..++++.+.+.+. ..+.++++.||.++ ...+..+++.+.+. .++++..+. ..++..++ +
T Consensus 71 ~~~~--~~~~~sl~~~l~~~~--~~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~~------~~~v~~~~-~ 137 (217)
T TIGR00453 71 VAGG--DTRQDSVRNGLKALK--DAEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALPV------ADTLKRVE-A 137 (217)
T ss_pred eCCC--chHHHHHHHHHHhCC--CCCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEec------cceEEEEc-C
Confidence 4322 245688988888772 24689999999985 34588998877653 333444433 12334445 4
Q ss_pred CCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchhccccC
Q 015259 161 TNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLAG 240 (410)
Q Consensus 161 ~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~~ 240 (410)
++.+..+.++. ......+ .|.|+...+..+...... ++ +.+ .|....+..
T Consensus 138 ~g~~~~~~~r~---~~~~~~~-p~~f~~~~l~~~~~~~~~------------------------~~-~~~-~d~~~~~~~ 187 (217)
T TIGR00453 138 DGFIVETVDRE---GLWAAQT-PQAFRTELLKKALARAKE------------------------EG-FEI-TDDASAVEK 187 (217)
T ss_pred CCceeecCChH---HeEEEeC-CCcccHHHHHHHHHHHHh------------------------cC-CCC-CcHHHHHHH
Confidence 56677776642 1222333 588888776443321100 01 112 333333332
Q ss_pred -CCceeEEeccceeeecCCccchhhhhH
Q 015259 241 -KKQLYTYETMDFWEQIKTPGMSLKCSG 267 (410)
Q Consensus 241 -~~~i~~~~~~g~~~~i~t~~~~~~an~ 267 (410)
+..+..++.+....+|+|++||..+..
T Consensus 188 ~g~~i~~~~~~~~~~~I~~~~Dl~~ae~ 215 (217)
T TIGR00453 188 LGGKVALVEGDALNFKITTPEDLALAEA 215 (217)
T ss_pred cCCCeEEEecCccccccCCHHHHHHHHH
Confidence 346777777666779999999977654
No 112
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.45 E-value=1.7e-12 Score=110.19 Aligned_cols=100 Identities=24% Similarity=0.288 Sum_probs=86.9
Q ss_pred CeEECCCCEECCCcEECCC---cEECCCcEECCCCEEee-------------eEECCCCEECCCCEEEeeEECCCCEECC
Q 015259 295 DVYVHPSAKIHPTAKIGPN---VSISANARIGAGVRLIS-------------CIILDGVEIMENAVVTNAIVGWKSSIGR 358 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~---~~ig~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~~~i~~~~~i~~ 358 (410)
.+++++++.|+++|+|.+. +.||++|.|+++|.|.. +.|++++.|++++.+.+++|++++.|++
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~ 100 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGSYVHIGK 100 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcCCcEECC
Confidence 5677788888888877754 68888888888888864 4799999999999999999999999999
Q ss_pred CcEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 359 WSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 359 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
++.|..+ ++|++++.|++++++ .++.|++++++..+
T Consensus 101 ~~~Ig~~---------~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~ 137 (161)
T cd03359 101 NCVIGRR---------CIIKDCVKILDGTVVPPDTVIPPYSVVSGR 137 (161)
T ss_pred CCEEcCC---------CEECCCcEECCCCEECCCCEeCCCCEEecc
Confidence 9999988 999999999999999 67789999888753
No 113
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.44 E-value=1.1e-12 Score=123.47 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=24.2
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||++++++.++.| .+++|++++.|..++++..+
T Consensus 254 ~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V~~~v~~~~~ 295 (324)
T TIGR01853 254 TKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGVTKSIPPPGV 295 (324)
T ss_pred cEECCCeEEccccccccCCEECCCCEEccCCEeCCcCCCCcE
Confidence 555555555555555 57888888888888887654
No 114
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.44 E-value=1.1e-12 Score=114.69 Aligned_cols=112 Identities=19% Similarity=0.242 Sum_probs=78.7
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeC
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLRE 85 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~ 85 (410)
+|||||| .|+||++ ||+|++++|+|||+|+++.+.+ ++|++.+..+.+...+. ..+ .+.++..
T Consensus 2 ~iIla~G--~s~R~g~-----~K~ll~~~g~pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~---~~~--~v~~v~~ 69 (188)
T TIGR03310 2 AIILAAG--LSSRMGQ-----NKLLLPYKGKTILEHVVDNALRLFFDEVILVLGHEADELVALLA---NHS--NITLVHN 69 (188)
T ss_pred eEEECCC--CcccCCC-----CceecccCCeeHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhc---cCC--CeEEEEC
Confidence 7999999 9999975 8999999999999999988774 66666655443322221 122 3444433
Q ss_pred -CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCc
Q 015259 86 -DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGM 136 (410)
Q Consensus 86 -~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~ 136 (410)
....|.+++++.+.+... ..+.+++++||.++ ...+..+++.+......
T Consensus 70 ~~~~~g~~~si~~~l~~~~--~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~ 121 (188)
T TIGR03310 70 PQYAEGQSSSIKLGLELPV--QSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDE 121 (188)
T ss_pred cChhcCHHHHHHHHhcCCC--CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCc
Confidence 334688899998887211 24689999999974 34588888877654443
No 115
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.44 E-value=1.8e-12 Score=109.07 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=77.5
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEEEe-----eEECCCCEECCCcEEccCCCC
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVVTN-----AIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~~~ 368 (410)
+++++.|++++.|.+++.||++|.|++++.|.. .+||++|.|+++|.|.. ++|++++.|+.++++.+
T Consensus 3 ~~~~~~i~~~~~i~~~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~---- 78 (154)
T cd04650 3 ISPKAYVHPTSYVIGDVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHG---- 78 (154)
T ss_pred cCCCeEECCCCEEEeeEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEEC----
Confidence 556667777777777888888888888888875 48999999999999985 89999999999999977
Q ss_pred CcceeeeEECCCCEECCCcEE-cceEEcCCcEEcc
Q 015259 369 NAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNV 402 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~ 402 (410)
++||++++|++++.+ .+++|++++.|..
T Consensus 79 ------~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~ 107 (154)
T cd04650 79 ------AKVGNYVIVGMGAILLNGAKIGDHVIIGA 107 (154)
T ss_pred ------cEECCCCEEcCCCEEeCCCEECCCCEECC
Confidence 899999999999888 4555555555543
No 116
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.43 E-value=9.1e-13 Score=131.26 Aligned_cols=120 Identities=22% Similarity=0.237 Sum_probs=71.2
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEc----
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ---- 363 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~---- 363 (410)
++.+.+++.||+++.|+++|.|. ++.||++|.|++++.|.+++|+++|.|+++++|. +++|+++|.|++++.+.
T Consensus 273 ~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~i 351 (451)
T TIGR01173 273 NVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARI 351 (451)
T ss_pred CeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEE
Confidence 44455555666666666666555 5666666666666666666666666665555555 34555444444433221
Q ss_pred ------------------------cCCC-----CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCc
Q 015259 364 ------------------------AEGD-----FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQE 407 (410)
Q Consensus 364 ------------------------~~~~-----~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~ 407 (410)
.+.- .....+ ++||++++||.++.+ .+++|++|++|..++|+.
T Consensus 352 g~~~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~-~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~ 430 (451)
T TIGR01173 352 GKGSKAGHLSYLGDAEIGSNVNIGAGTITCNYDGANKHK-TIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEG 430 (451)
T ss_pred CCCcEecceeeEeeeEEcCCcEECCCeEEeCcccccCCC-CEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCC
Confidence 1100 000111 677888888877765 688999999999999987
Q ss_pred ccC
Q 015259 408 IIL 410 (410)
Q Consensus 408 ~~~ 410 (410)
.++
T Consensus 431 ~~~ 433 (451)
T TIGR01173 431 ALA 433 (451)
T ss_pred cEE
Confidence 653
No 117
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.43 E-value=2.7e-12 Score=109.67 Aligned_cols=97 Identities=28% Similarity=0.338 Sum_probs=74.6
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEE-----eeEECCCCEECCCcEEccCC
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-----SCIILDGVEIMENAVVT-----NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~ 366 (410)
.||+++.|+++|.|.+++.||++|.|++++.|. ++.||++|.|++++.|. .+.|++++.|+.++.|.+.
T Consensus 4 ~ig~~~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~- 82 (167)
T cd00710 4 VIDPSAYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGP- 82 (167)
T ss_pred EeCCCeEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCC-
Confidence 566666666666666677777777777777775 37899999999999984 5789999999999999876
Q ss_pred CCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
++||++|+||.++.+.+++|+.+..|..
T Consensus 83 --------~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~ 110 (167)
T cd00710 83 --------AYIGDNCFIGFRSVVFNAKVGDNCVIGH 110 (167)
T ss_pred --------EEECCCCEECCCCEEECCEECCCCEEcC
Confidence 8999999999998885555555555443
No 118
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.43 E-value=2.8e-12 Score=113.72 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=26.0
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||++++|+.++.+ +++.|++++.|..++++..+
T Consensus 151 ~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~~~ 192 (205)
T cd03352 151 TTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEY 192 (205)
T ss_pred cEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeECCCCCE
Confidence 677777777777776 57777788888888777654
No 119
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.43 E-value=1.4e-12 Score=108.40 Aligned_cols=96 Identities=24% Similarity=0.281 Sum_probs=75.6
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEE-----eeEECCCCEECCCcEEccCCC
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVT-----NAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~~ 367 (410)
.|++++.|.+.+.|-+++.||+++.|+++++|. .-.||+++.|.++|+|. .++||++++||.++.|++
T Consensus 13 ~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHG--- 89 (176)
T COG0663 13 KIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHG--- 89 (176)
T ss_pred CCCCceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEE---
Confidence 344445555555555577777777777777775 56799999999999997 589999999999999999
Q ss_pred CCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcc
Q 015259 368 FNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNV 402 (410)
Q Consensus 368 ~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~ 402 (410)
|.|+++|.||-|++| .+|+|++|++|++
T Consensus 90 -------c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~ 124 (176)
T COG0663 90 -------CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTP 124 (176)
T ss_pred -------eEECCCcEEecCceEeCCcEECCCcEEccCCcccC
Confidence 999999999998888 4666667777666
No 120
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.42 E-value=1.5e-12 Score=96.70 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=52.9
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEE
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITIL 377 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i 377 (410)
|++++.|++++.|. ++.|+++|.|++++.|.+++|+++++|+++++|.+++|++++.|++++.|..+ ++|
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~---------~~v 71 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIPPG---------SLI 71 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEECCC---------CEE
Confidence 56666666666665 57777777777777777777777777777777777777777777776666655 566
Q ss_pred CCCCEEC
Q 015259 378 GEAVGVE 384 (410)
Q Consensus 378 ~~~~~i~ 384 (410)
++++.||
T Consensus 72 ~~~~~ig 78 (79)
T cd05787 72 SFGVVIG 78 (79)
T ss_pred eCCcEeC
Confidence 6666555
No 121
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.42 E-value=5e-12 Score=110.94 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=73.1
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (410)
...+.+++.+++++.|++++.|++++.||++|.|++++.|+ ++.|+++|.|+.++.+. +++|+++|.|+.++.+.++
T Consensus 90 ~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~- 168 (197)
T cd03360 90 SAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQG- 168 (197)
T ss_pred CeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCC-
Confidence 34556666777777777777777777777777777777775 56777777777777776 5777777777777777776
Q ss_pred CCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+.||+++.|++++++.+. +.+++++.
T Consensus 169 --------~~ig~~~~v~~~~~v~~~-~~~~~~~~ 194 (197)
T cd03360 169 --------VTIGAGAIIGAGAVVTKD-VPDGSVVV 194 (197)
T ss_pred --------CEECCCCEECCCCEEcCC-CCCCCEEE
Confidence 777887777777777553 45555553
No 122
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.42 E-value=2.3e-12 Score=103.87 Aligned_cols=99 Identities=23% Similarity=0.244 Sum_probs=56.6
Q ss_pred cCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCccee
Q 015259 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLG 373 (410)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~ 373 (410)
++++|++++.|++++.|+++++||++|.|++++.+.++.+ .+..+..++.+.+++|++++.|+.++.+..+
T Consensus 15 ~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~-~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v~~~-------- 85 (119)
T cd03358 15 NDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY-PRSKIYRKWELKGTTVKRGASIGANATILPG-------- 85 (119)
T ss_pred CCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC-CccccccccccCCcEECCCcEECcCCEEeCC--------
Confidence 3333333333333333333344444444444444333222 1222223444567888888888888888776
Q ss_pred eeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 374 ITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 374 ~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
+.|++++.|++++.+..+ +.+++++..+
T Consensus 86 -~~ig~~~~i~~~~~v~~~-i~~~~~~~G~ 113 (119)
T cd03358 86 -VTIGEYALVGAGAVVTKD-VPPYALVVGN 113 (119)
T ss_pred -cEECCCCEEccCCEEeCc-CCCCeEEecC
Confidence 888888888888888664 6777766554
No 123
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.42 E-value=3.5e-12 Score=112.60 Aligned_cols=104 Identities=22% Similarity=0.275 Sum_probs=77.9
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (410)
.+.+.+++.|++++.|++++.|++++.||++|.|++++.|. ++.|++++.++.++.+. +++|+++++|+.++.+.++
T Consensus 93 ~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~- 171 (201)
T TIGR03570 93 SAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQG- 171 (201)
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCC-
Confidence 45566667777777777777777777777777777777775 57788888888888777 6788888888888888776
Q ss_pred CCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.|+++++|++++++.++ +.+++++..
T Consensus 172 --------~~i~~~~~i~~~~~v~~~-~~~~~~~~g 198 (201)
T TIGR03570 172 --------VTIGAGAIVGAGAVVTKD-IPDGGVVVG 198 (201)
T ss_pred --------CEECCCCEECCCCEECCc-CCCCCEEEe
Confidence 788888888888888654 566666544
No 124
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.42 E-value=1.9e-12 Score=123.66 Aligned_cols=54 Identities=31% Similarity=0.338 Sum_probs=25.2
Q ss_pred EccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEE
Q 015259 292 IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVV 345 (410)
Q Consensus 292 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 345 (410)
+.+++.||+++.|+++|.|++++.||++|.|+++++|. ++.|+++|.|+++++|
T Consensus 127 I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I 181 (343)
T PRK00892 127 IGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVI 181 (343)
T ss_pred EeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEE
Confidence 33334444444444444444444444444444444443 2335555555555555
No 125
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.42 E-value=3.9e-12 Score=105.28 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=37.5
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEEC
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVG 351 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~ 351 (410)
++.+.++|++++.|++++.|.+.+.|+.+++||+++.|. ++.|++++.|+++|.|. ++.++
T Consensus 3 ~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 3 RVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred ccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 456666777777777777776666666666666666664 35555555555555544 44444
No 126
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.41 E-value=1e-12 Score=122.49 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=73.6
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeee
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGIT 375 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~ 375 (410)
+.++.++.|||-+.++|++.|+++++||..|.+.++.||+++.+++=++|.++.||.++.||+++..-+.... -+.- +
T Consensus 321 s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~-nK~~-T 398 (460)
T COG1207 321 STVGEGATVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGK-NKFK-T 398 (460)
T ss_pred cEecCCcccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCc-ccce-e
Confidence 3444455555555555555566666666666666666666666666666666666666666666555442111 1112 8
Q ss_pred EECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 376 ILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 376 ~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+||+++.||+++.+ .+..|++|++|+.|||+.-+
T Consensus 399 ~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aL 439 (460)
T COG1207 399 IIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGAL 439 (460)
T ss_pred eecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCce
Confidence 99999999999998 68899999999999998643
No 127
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.40 E-value=5.3e-12 Score=114.68 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=46.1
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-------------eeEECCCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-------------NAIVGWKS 354 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-------------~~~i~~~~ 354 (410)
++.+.+.+.|++++.|+++|.|++++.||++|+|++++.|. ++.||++|.|++++.|. ..+||+++
T Consensus 5 ~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~~~ 84 (255)
T PRK12461 5 TAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGDRN 84 (255)
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECCce
Confidence 34555555565666666666666666666666666666664 56666666666666664 35566666
Q ss_pred EECCCcEEcc
Q 015259 355 SIGRWSRVQA 364 (410)
Q Consensus 355 ~i~~~~~i~~ 364 (410)
.|+++++|..
T Consensus 85 ~I~e~vtI~~ 94 (255)
T PRK12461 85 VIREGVTIHR 94 (255)
T ss_pred EECCccEEec
Confidence 6666666654
No 128
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.40 E-value=3.4e-12 Score=121.88 Aligned_cols=101 Identities=23% Similarity=0.291 Sum_probs=74.4
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~ 366 (410)
++.+.+.+++++++.|++++.|++++.||++|+|+++|.|. ++.||++|.|+++++|. ++.|+++|.|++++.|+...
T Consensus 106 ~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~ 185 (343)
T PRK00892 106 SAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDG 185 (343)
T ss_pred CcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccC
Confidence 56677777788888888888888888888888888888886 67788888888888887 46688888888888886421
Q ss_pred C----------CCcceeeeEECCCCEECCCcEE
Q 015259 367 D----------FNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 367 ~----------~~~~~~~~~i~~~~~i~~~~~v 389 (410)
+ .--+.|.++||+++.||+++++
T Consensus 186 f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I 218 (343)
T PRK00892 186 FGFANDRGGWVKIPQLGRVIIGDDVEIGANTTI 218 (343)
T ss_pred cCcccCCCceeeccccccEEECCCcEECCCcEE
Confidence 1 0011244777777777777766
No 129
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.39 E-value=5.2e-12 Score=110.87 Aligned_cols=106 Identities=17% Similarity=0.293 Sum_probs=76.1
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
.+|.+|||||| .|+||+. .||+|++++|+|||+|+++.+.. ++|++....+.+. .++. .+
T Consensus 2 ~~~~~vILA~G--~s~Rm~~----~~K~ll~~~g~~ll~~~i~~l~~~~~~i~vv~~~~~~~~~--------~~~~--~~ 65 (193)
T PRK00317 2 PPITGVILAGG--RSRRMGG----VDKGLQELNGKPLIQHVIERLAPQVDEIVINANRNLARYA--------AFGL--PV 65 (193)
T ss_pred CCceEEEEcCC--CcccCCC----CCCceeEECCEEHHHHHHHHHhhhCCEEEEECCCChHHHH--------hcCC--cE
Confidence 36899999999 9999952 48999999999999999999875 7776654432221 1222 23
Q ss_pred eeC--CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHH
Q 015259 83 LRE--DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHR 131 (410)
Q Consensus 83 i~~--~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~ 131 (410)
+.. ....|+.++++.+.+... .+.++++.||.++ . ..+..+++.+.
T Consensus 66 v~~~~~~~~g~~~~i~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 66 IPDSLADFPGPLAGILAGLKQAR---TEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred EeCCCCCCCCCHHHHHHHHHhcC---CCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 322 223688899998888654 4679999999985 3 34777776543
No 130
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.1e-12 Score=120.09 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=87.6
Q ss_pred EccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcc
Q 015259 292 IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAK 371 (410)
Q Consensus 292 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~ 371 (410)
+...++++++++|++++.|. .|+||.+|.||++++|.+|+|++|++||+++.|++||||.++.||++|.+.+
T Consensus 331 ~g~d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~Ig~gs~L~n------- 402 (433)
T KOG1462|consen 331 VGADSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQIGSGSKLKN------- 402 (433)
T ss_pred cchhhccCCCceecccceee-eeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccceecCCCeeee-------
Confidence 34578899999999999998 9999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEECCCCEECCCcEEcceEEcCC
Q 015259 372 LGITILGEAVGVEDEVVVTNSIVLPN 397 (410)
Q Consensus 372 ~~~~~i~~~~~i~~~~~v~~~~v~~~ 397 (410)
|+||.+=+|.++....+.++..+
T Consensus 403 ---C~Ig~~yvVeak~~~~~ev~~~~ 425 (433)
T KOG1462|consen 403 ---CIIGPGYVVEAKGKHGGEVLVSN 425 (433)
T ss_pred ---eEecCCcEEcccccccccEeecc
Confidence 99999999998888877776554
No 131
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.39 E-value=6.6e-12 Score=112.47 Aligned_cols=7 Identities=14% Similarity=0.178 Sum_probs=3.0
Q ss_pred EcCCcEE
Q 015259 394 VLPNKTL 400 (410)
Q Consensus 394 v~~~~~v 400 (410)
|+++++|
T Consensus 225 vp~~svv 231 (269)
T TIGR00965 225 VPAGSVV 231 (269)
T ss_pred cCCCcEE
Confidence 3444444
No 132
>PLN02472 uncharacterized protein
Probab=99.39 E-value=4.9e-12 Score=113.57 Aligned_cols=96 Identities=17% Similarity=0.217 Sum_probs=75.5
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEE-----------eeEECCCCEECCCcE
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVT-----------NAIVGWKSSIGRWSR 361 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~-----------~~~i~~~~~i~~~~~ 361 (410)
.+++++.|.+++.+.+++.||+++.|+++++|. ..+||++|.|+++|+|. +++|+++|.||++|.
T Consensus 61 ~i~~~~~I~p~a~i~G~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~ 140 (246)
T PLN02472 61 KVAVDAYVAPNVVLAGQVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSL 140 (246)
T ss_pred ccCCCCEECCCCEEecCEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcE
Confidence 356667777777777778888888888888775 26799999999999994 589999999999999
Q ss_pred EccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcc
Q 015259 362 VQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNV 402 (410)
Q Consensus 362 i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~ 402 (410)
|.+ |+|+++|.||.+++| .+|+|+++++|.+
T Consensus 141 L~~----------~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~ 178 (246)
T PLN02472 141 LRS----------CTIEPECIIGQHSILMEGSLVETHSILEAGSVLPP 178 (246)
T ss_pred ECC----------eEEcCCCEECCCCEECCCCEECCCCEECCCCEECC
Confidence 976 788888888887777 3566666666663
No 133
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.38 E-value=5.4e-12 Score=106.35 Aligned_cols=95 Identities=20% Similarity=0.294 Sum_probs=74.1
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEee----eEECCCCEECCCCEEEe-----eEECCCCEECCCcEEccCCCC
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLIS----CIILDGVEIMENAVVTN-----AIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~~~~~~ 368 (410)
+++++.|++++.|.+++.||++|.|++++.|.. ++||++|.|+++|+|.. ++|++++.|+.++.+.+
T Consensus 2 ~~~~~~i~~~a~i~g~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~---- 77 (153)
T cd04645 2 IDPSAFIAPNATVIGDVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHG---- 77 (153)
T ss_pred ccCCeEECCCCEEEEeEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEee----
Confidence 455666666666666778888888888887764 58999999999999996 59999999999999987
Q ss_pred CcceeeeEECCCCEECCCcEEc-------ceEEcCCcEEcc
Q 015259 369 NAKLGITILGEAVGVEDEVVVT-------NSIVLPNKTLNV 402 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v~-------~~~v~~~~~v~~ 402 (410)
++|+++++|++++.+. ++.|++++.|.+
T Consensus 78 ------~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~ 112 (153)
T cd04645 78 ------CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPP 112 (153)
T ss_pred ------eEECCCCEECCCCEEcCCCEECCCCEECCCCEECC
Confidence 7888888888877773 445555555544
No 134
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.38 E-value=4e-12 Score=94.40 Aligned_cols=77 Identities=16% Similarity=0.250 Sum_probs=70.5
Q ss_pred EECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc-ceE
Q 015259 315 SISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT-NSI 393 (410)
Q Consensus 315 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~-~~~ 393 (410)
+||++++|++++.|.+++|+++|.|++++.|.+++|++++.|+++++|.+ ++|++++.|++++.+. +++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~----------~~i~~~~~i~~~~~i~~~~~ 70 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHH----------SIVADGAVIGKGCTIPPGSL 70 (79)
T ss_pred CccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeC----------cEEcCCCEECCCCEECCCCE
Confidence 36888888899999999999999999999999999999999999999987 8999999999999994 788
Q ss_pred EcCCcEEc
Q 015259 394 VLPNKTLN 401 (410)
Q Consensus 394 v~~~~~v~ 401 (410)
+++++.|+
T Consensus 71 v~~~~~ig 78 (79)
T cd05787 71 ISFGVVIG 78 (79)
T ss_pred EeCCcEeC
Confidence 88888775
No 135
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.38 E-value=7.7e-12 Score=97.00 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=78.6
Q ss_pred ccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcc
Q 015259 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAK 371 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~ 371 (410)
.+++++++++.|++++.|.++++||++|.|++++.|. +++||++|.|+. .|.+|+|++++.+++++.|..
T Consensus 9 ~g~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~------- 79 (101)
T cd05635 9 DGPIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGH------- 79 (101)
T ss_pred CCCEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEee-------
Confidence 3578999999999999999999999999999999997 599999999974 688999999999999999986
Q ss_pred eeeeEECCCCEECCCcEEcc
Q 015259 372 LGITILGEAVGVEDEVVVTN 391 (410)
Q Consensus 372 ~~~~~i~~~~~i~~~~~v~~ 391 (410)
++||+++.||+++..++
T Consensus 80 ---siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 80 ---SYLGSWCNLGAGTNNSD 96 (101)
T ss_pred ---eEECCCCEECCCceecc
Confidence 99999999999988753
No 136
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.38 E-value=1.4e-11 Score=108.76 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=67.8
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCC
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~ 368 (410)
..+.+.+++++++.|++++.|+++++|+++++||++|.|. +++|+.++.|++++ .|+.++.++.++.|+.+
T Consensus 88 ~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~-----~i~~~~~i~~~~~ig~~--- 159 (201)
T TIGR03570 88 TLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYV-----HIAPGVTLSGGVVIGEG--- 159 (201)
T ss_pred EEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCC-----EECCCCEEeCCcEECCC---
Confidence 4456666777777777766666666666666666666663 45555444444444 34445555555555554
Q ss_pred CcceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 369 NAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
|.||.++.|.+++.+ .+|+|+++++|..++++..+
T Consensus 160 ------~~ig~~~~v~~~~~i~~~~~i~~~~~v~~~~~~~~~ 195 (201)
T TIGR03570 160 ------VFIGAGATIIQGVTIGAGAIVGAGAVVTKDIPDGGV 195 (201)
T ss_pred ------CEECCCCEEeCCCEECCCCEECCCCEECCcCCCCCE
Confidence 566666666666666 57888899999999888754
No 137
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.37 E-value=5.1e-12 Score=93.84 Aligned_cols=77 Identities=25% Similarity=0.340 Sum_probs=70.6
Q ss_pred EECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcc-eE
Q 015259 315 SISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-SI 393 (410)
Q Consensus 315 ~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~~ 393 (410)
+||+++.|++++.|.+++|+++|.|++++.|.+++|++++.|+++++|.+ ++|++++.|++++.+.+ ++
T Consensus 1 ~ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~----------svv~~~~~i~~~~~i~~~~~ 70 (79)
T cd03356 1 LIGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVD----------SIIGDNAVIGENVRVVNLCI 70 (79)
T ss_pred CccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEEC----------CEECCCCEECCCCEEcCCeE
Confidence 36788888888888889999999999999999999999999999999987 89999999999999976 99
Q ss_pred EcCCcEEc
Q 015259 394 VLPNKTLN 401 (410)
Q Consensus 394 v~~~~~v~ 401 (410)
+++++.|+
T Consensus 71 ig~~~~i~ 78 (79)
T cd03356 71 IGDDVVVE 78 (79)
T ss_pred ECCCeEEC
Confidence 99988775
No 138
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.37 E-value=1.1e-11 Score=107.51 Aligned_cols=105 Identities=22% Similarity=0.455 Sum_probs=76.3
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc---EEEecc-cchHHHHHHHHhhcccCCccEE
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR---IYLVGF-YEEREFALYVSSISNELRIPVR 81 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~---i~vv~~-~~~~~i~~~~~~~~~~~~~~i~ 81 (410)
+..|.+|||||| .++|| . +|+|++++|+|||+|+++.|.. .+++.. ..... + ..++ +.
T Consensus 2 ~~~~~~vILAGG--~srRm-~-----dK~l~~~~g~~lie~v~~~L~~~~~~vvi~~~~~~~~---~-----~~~g--~~ 63 (192)
T COG0746 2 MTPMTGVILAGG--KSRRM-R-----DKALLPLNGRPLIEHVIDRLRPQVDVVVISANRNQGR---Y-----AEFG--LP 63 (192)
T ss_pred CCCceEEEecCC--ccccc-c-----ccccceeCCeEHHHHHHHHhcccCCEEEEeCCCchhh---h-----hccC--Cc
Confidence 347999999999 99999 5 8999999999999999999998 344433 33221 2 1122 44
Q ss_pred EeeCCCCC-CcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCC-hHHHHHHHH
Q 015259 82 YLREDKPH-GSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEMLDAHR 131 (410)
Q Consensus 82 ~i~~~~~~-g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~-l~~~l~~~~ 131 (410)
++...... |+..+++.+++... .+.+++++||+++ ..+ +..+++...
T Consensus 64 vv~D~~~~~GPL~Gi~~al~~~~---~~~~~v~~~D~P~i~~~lv~~l~~~~~ 113 (192)
T COG0746 64 VVPDELPGFGPLAGILAALRHFG---TEWVLVLPCDMPFIPPELVERLLSAFK 113 (192)
T ss_pred eeecCCCCCCCHHHHHHHHHhCC---CCeEEEEecCCCCCCHHHHHHHHHhhc
Confidence 44443333 99999999999886 4789999999996 333 455555443
No 139
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.36 E-value=6.3e-12 Score=98.37 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=66.3
Q ss_pred EECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCE
Q 015259 303 KIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVG 382 (410)
Q Consensus 303 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~ 382 (410)
.|++++.|. +++||++|+|+ ++.|.+|+|+++|.|+++++|.+|+|++++.|+.++.+.+ ++|++++.
T Consensus 3 ~i~~~~~i~-~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~----------siig~~~~ 70 (104)
T cd04651 3 YIGRRGEVK-NSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRR----------AIIDKNVV 70 (104)
T ss_pred eecCCCEEE-eEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEe----------EEECCCCE
Confidence 445555554 78888999998 8999999999999999999999999999999999999976 89999999
Q ss_pred ECCCcEEcce
Q 015259 383 VEDEVVVTNS 392 (410)
Q Consensus 383 i~~~~~v~~~ 392 (410)
|++++.+.+.
T Consensus 71 Ig~~~~v~~~ 80 (104)
T cd04651 71 IPDGVVIGGD 80 (104)
T ss_pred ECCCCEECCC
Confidence 9999988544
No 140
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.36 E-value=5.7e-12 Score=125.58 Aligned_cols=120 Identities=20% Similarity=0.255 Sum_probs=85.1
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCc-------
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWS------- 360 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~------- 360 (410)
++.+.+++.||+++.|+++|.|. +++||++|+|++++.|.+++|+++|.|++++++. ++.|++++.||+++
T Consensus 280 ~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~i 358 (459)
T PRK14355 280 GVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVM 358 (459)
T ss_pred CcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEE
Confidence 56677778888888888888886 7899999999999999888888888888777776 55555555554432
Q ss_pred ---------------------EEccCCC---C-CcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCcc
Q 015259 361 ---------------------RVQAEGD---F-NAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEI 408 (410)
Q Consensus 361 ---------------------~i~~~~~---~-~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~ 408 (410)
.|+.+.- . ......++||++|+||.++.+ .+++|+++++|..++++..
T Consensus 359 g~~~~~~~~~~ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~~v~~~~ 438 (459)
T PRK14355 359 GEGSKASHLTYLGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTKDVPPDS 438 (459)
T ss_pred CCCceeeeeccccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcccCCCCc
Confidence 2222210 0 011112677888888887766 6888889999999988865
Q ss_pred c
Q 015259 409 I 409 (410)
Q Consensus 409 ~ 409 (410)
+
T Consensus 439 ~ 439 (459)
T PRK14355 439 L 439 (459)
T ss_pred E
Confidence 4
No 141
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.36 E-value=1.2e-11 Score=108.72 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=87.0
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE----------------------
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT---------------------- 346 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~---------------------- 346 (410)
++.+. ++.||+++.|+++|.|. +++||++|.|++++.|.++.||++|.|++++.|.
T Consensus 14 ~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~~h~~~~~s~~~~~~~~~~~~ 91 (204)
T TIGR03308 14 TAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINATNHPMERPTLHHFTYRAAMYF 91 (204)
T ss_pred CcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEeeeEECCCCEECCCCEECCCCCCCCccccccccccccccc
Confidence 56664 57899999999999998 8999999999999999999999999999999884
Q ss_pred ----------------eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 347 ----------------NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 347 ----------------~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
+++|+++|.||.++.|.++ +.||+++.|+++++|.+. |.+++++..+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~I~~g---------v~Ig~~~~I~~gs~v~~~-i~~~~~~~G~ 154 (204)
T TIGR03308 92 DDASDDADFFAWRRAKRVTIGHDVWIGHGAVILPG---------VTIGNGAVIAAGAVVTKD-VAPYTIVAGV 154 (204)
T ss_pred ccccccccccccccCCCeEECCCCEECCCCEECCC---------CEECCCCEECCCCEECCC-CCCCcEEEec
Confidence 5678888888888888877 899999999999998654 6777776544
No 142
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.34 E-value=4.2e-12 Score=126.39 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=69.6
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeee
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGIT 375 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~ 375 (410)
+.|++++.|+++|.|.+++.||++|+|++++.|.+++|++++.|++++.+.+++|+++|.||+++.+.... .....+ +
T Consensus 314 ~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~-~~~~~~-~ 391 (450)
T PRK14360 314 SQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYD-GVKKHR-T 391 (450)
T ss_pred ccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCCcEeccceecCCceecCCcEECccceecccc-ccccCC-c
Confidence 33445555555555555555555555555555555666666666655555566677777777766654311 001111 6
Q ss_pred EECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 376 ILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 376 ~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+||++|+||.++.+ ++++|++|++|..++|+..+
T Consensus 392 ~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~ 432 (450)
T PRK14360 392 VIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSL 432 (450)
T ss_pred EeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCE
Confidence 77777777777766 67888999999999998765
No 143
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.34 E-value=1.8e-11 Score=110.49 Aligned_cols=210 Identities=13% Similarity=0.163 Sum_probs=125.3
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCc--
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRI-- 78 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~-- 78 (410)
.+.+|||||| .|+||+. ..||+|++++|+|||.|+++.+.. ++|++.... ..+.+++.+ ++.
T Consensus 2 ~~~~iIlAaG--~g~R~g~---~~~K~l~~l~gkpll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~----~~~~~ 72 (230)
T PRK13385 2 NYELIFLAAG--QGKRMNA---PLNKMWLDLVGEPIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ----LNVAD 72 (230)
T ss_pred ceEEEEECCe--eccccCC---CCCcceeEECCeEHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh----cCcCC
Confidence 3789999999 9999974 579999999999999999999864 666665432 333344433 221
Q ss_pred -cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceE
Q 015259 79 -PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGEL 155 (410)
Q Consensus 79 -~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v 155 (410)
++.++. ...+..++++.+.+.+.. .+.++++.||.++ ...+.++++.+.+.++. +..... . ..+
T Consensus 73 ~~~~~v~--~g~~r~~sv~~gl~~~~~--~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~--~~~~~~--~-----dti 139 (230)
T PRK13385 73 QRVEVVK--GGTERQESVAAGLDRIGN--EDVILVHDGARPFLTQDIIDRLLEGVAKYGAA--ICAVEV--K-----DTV 139 (230)
T ss_pred CceEEcC--CCchHHHHHHHHHHhccC--CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcE--EEEEec--c-----ceE
Confidence 344443 333456899998887742 2457888999996 34488898887654432 233332 1 122
Q ss_pred EEcCCCCcEEEEecCCCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeeccchh
Q 015259 156 VADPDTNELLHYTEKPETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDIL 235 (410)
Q Consensus 156 ~~d~~~~~v~~i~ekp~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l 235 (410)
... +++.+....++ + .-+.--+.|.|+.+.+....+.... +.+.+ +|-.
T Consensus 140 ~~~-~~~~~~~~i~r--~--~~~~~qtpq~f~~~~l~~~~~~~~~-------------------------~~~~~-td~~ 188 (230)
T PRK13385 140 KRV-KDKQVIETVDR--N--ELWQGQTPQAFELKILQKAHRLASE-------------------------QQFLG-TDEA 188 (230)
T ss_pred EEE-cCCeeEeccCH--H--HHhhhcCCceeeHHHHHHHHHHHHh-------------------------cCCCc-CcHH
Confidence 221 13344333221 1 1111224677777654322221100 11112 3333
Q ss_pred cccc-CCCceeEEeccceeeecCCccchhhhhHHHH
Q 015259 236 SPLA-GKKQLYTYETMDFWEQIKTPGMSLKCSGLYL 270 (410)
Q Consensus 236 ~~l~-~~~~i~~~~~~g~~~~i~t~~~~~~an~~~~ 270 (410)
..+. .+..+..++.+.....|+||+|+..|...+.
T Consensus 189 ~~~~~~g~~v~~v~~~~~n~kItt~eDl~~a~~~l~ 224 (230)
T PRK13385 189 SLVERSPHPVKLVQGSYYNIKLTTPEDMPLAKAILQ 224 (230)
T ss_pred HHHHHcCCCEEEEECCcccCcCCCHHHHHHHHHHHh
Confidence 3232 3457888887777889999999999876654
No 144
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.34 E-value=2e-11 Score=107.14 Aligned_cols=106 Identities=18% Similarity=0.192 Sum_probs=64.1
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCC
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDF 368 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~ 368 (410)
..+.+.+.+++++.+++++.|.++++|+++++||++|.|. +++|++++.|+++|.| +.++.++.++.|+.+
T Consensus 85 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i-----~~~~~i~~~~~ig~~--- 156 (197)
T cd03360 85 TLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHI-----APGVVLSGGVTIGEG--- 156 (197)
T ss_pred eEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEE-----CCCCEEcCCcEECCC---
Confidence 3455566666666676666666666666666666666663 4555555555555444 333333334444443
Q ss_pred CcceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 369 NAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
|.||.++.|.+++.+ .+++|+++++|.+++++..+
T Consensus 157 ------~~ig~~~~v~~~~~ig~~~~v~~~~~v~~~~~~~~~ 192 (197)
T cd03360 157 ------AFIGAGATIIQGVTIGAGAIIGAGAVVTKDVPDGSV 192 (197)
T ss_pred ------CEECCCCEEcCCCEECCCCEECCCCEEcCCCCCCCE
Confidence 455555555555555 56778899999998887654
No 145
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.33 E-value=2e-11 Score=110.87 Aligned_cols=127 Identities=20% Similarity=0.314 Sum_probs=84.4
Q ss_pred CCCC-CCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccc-hHHHHHHHHhhc
Q 015259 2 GSSE-DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYE-EREFALYVSSIS 73 (410)
Q Consensus 2 ~~~~-~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~-~~~i~~~~~~~~ 73 (410)
+.+| +..+.+|||||| .|+||+. ..||.|++++|+|+|+|+++.+.. |+|++... .+.+++.+..
T Consensus 17 ~~~~~~~~i~aIILAAG--~gsRmg~---~~pKqll~l~Gkpll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-- 89 (252)
T PLN02728 17 SAVVKEKSVSVILLAGG--VGKRMGA---NMPKQYLPLLGQPIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-- 89 (252)
T ss_pred ccccccCceEEEEEccc--ccccCCC---CCCcceeEECCeEHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh--
Confidence 3344 345789999999 9999964 679999999999999999999874 66666543 3344444332
Q ss_pred ccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCC--ccc--CCChHHHHHHHHhcCCceEEEEEec
Q 015259 74 NELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD--VCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (410)
Q Consensus 74 ~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D--~i~--~~~l~~~l~~~~~~~~~~~l~~~~~ 144 (410)
++..+.++ ....+..++++.+.+.+.. +..+|+.+| .++ ...+..+++...+.+ +.+...+.
T Consensus 90 --~~~~i~~v--~gg~~r~~SV~~gl~~l~~---~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~i~~~~~ 155 (252)
T PLN02728 90 --IDVPLKFA--LPGKERQDSVFNGLQEVDA---NSELVCIHDSARPLVTSADIEKVLKDAAVHG--AAVLGVPV 155 (252)
T ss_pred --cCCceEEc--CCCCchHHHHHHHHHhccC---CCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eEEEeecc
Confidence 33345544 2344568899999888742 334556666 564 334788888776544 33444443
No 146
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.33 E-value=2.3e-11 Score=106.88 Aligned_cols=103 Identities=21% Similarity=0.380 Sum_probs=73.4
Q ss_pred CCCCCCCceEEEEEecCCCCCCccccCCCCCCccccccCC-ccchhhhHhhccc----EEEecccchHHHHHHHHhhccc
Q 015259 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGG-QPMVHHPISACKR----IYLVGFYEEREFALYVSSISNE 75 (410)
Q Consensus 1 ~~~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g-~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~ 75 (410)
|..+|..++.+|||||| .|+||+. ||+|++++| +|+|+|+++.+.. ++|++.. +.+ .
T Consensus 1 ~~~~~~~~i~~vILAgG--~s~RmG~-----~K~ll~~~g~~~ll~~~i~~l~~~~~~vvvv~~~--~~~----~----- 62 (196)
T PRK00560 1 MKNPMIDNIPCVILAGG--KSSRMGE-----NKALLPFGSYSSLLEYQYTRLLKLFKKVYISTKD--KKF----E----- 62 (196)
T ss_pred CCCccccCceEEEECCc--ccccCCC-----CceEEEeCCCCcHHHHHHHHHHHhCCEEEEEECc--hhc----c-----
Confidence 66777778999999999 9999976 999999999 9999999999986 6666653 111 0
Q ss_pred CCccEEEee--CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCC-hHHH
Q 015259 76 LRIPVRYLR--EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEM 126 (410)
Q Consensus 76 ~~~~i~~i~--~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~-l~~~ 126 (410)
..+.++. .....|+..++..+..... .+.++|+.||+++ +.+ +..+
T Consensus 63 --~~~~~v~d~~~~~~gpl~gi~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l 112 (196)
T PRK00560 63 --FNAPFLLEKESDLFSPLFGIINAFLTLQ---TPEIFFISVDTPFVSFESIKKL 112 (196)
T ss_pred --cCCcEEecCCCCCCCcHHHHHHHHHhcC---CCeEEEEecCcCcCCHHHHHHH
Confidence 1123332 2334577777766555443 4789999999985 333 4444
No 147
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.33 E-value=9.4e-12 Score=108.41 Aligned_cols=112 Identities=23% Similarity=0.348 Sum_probs=82.3
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+.. ++|++........+++. .++ +.++
T Consensus 1 ~~~vIlAgG--~s~R~g~-----~K~l~~~~g~~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~----~~~--~~~~ 67 (186)
T cd04182 1 IAAIILAAG--RSSRMGG-----NKLLLPLDGKPLLRHALDAALAAGLSRVIVVLGAEADAVRAALA----GLP--VVVV 67 (186)
T ss_pred CeEEEECCC--CCCCCCC-----CceeCeeCCeeHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhc----CCC--eEEE
Confidence 468999999 9999987 9999999999999999999875 77777665444444332 223 3333
Q ss_pred e-CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcC
Q 015259 84 R-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYG 134 (410)
Q Consensus 84 ~-~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~ 134 (410)
. +....|++++++.+++.+.. ..+.+++++||+++ ...+..+++.+.+..
T Consensus 68 ~~~~~~~G~~~~i~~al~~~~~-~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~ 120 (186)
T cd04182 68 INPDWEEGMSSSLAAGLEALPA-DADAVLILLADQPLVTAETLRALIDAFREDG 120 (186)
T ss_pred eCCChhhCHHHHHHHHHHhccc-cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCC
Confidence 2 33456899999999888752 24789999999974 445788887765433
No 148
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.32 E-value=1.2e-11 Score=123.15 Aligned_cols=117 Identities=18% Similarity=0.122 Sum_probs=66.0
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCE-------------
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSS------------- 355 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~------------- 355 (410)
+.+.+++.||+++.|+++|.|. +++||++|.|++++.|.+|+|+++|+|++++.|. ++.+++++.
T Consensus 278 ~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~ 356 (456)
T PRK09451 278 VIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLG 356 (456)
T ss_pred eEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeC
Confidence 4444455555555555555554 5555555555555555555555555555555554 344444433
Q ss_pred ---------------------ECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCc
Q 015259 356 ---------------------IGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQE 407 (410)
Q Consensus 356 ---------------------i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~ 407 (410)
||+++.+.... ......++||++|+||.++.+ .+++|++|++|.+++++.
T Consensus 357 ~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~--~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~ 434 (456)
T PRK09451 357 KGSKAGHLTYLGDAEIGDNVNIGAGTITCNYD--GANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAEN 434 (456)
T ss_pred CCCccCccccccccEECCCCEEcCCeEEeccc--CcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCC
Confidence 33333322110 000112677788887777776 688899999999999887
Q ss_pred cc
Q 015259 408 II 409 (410)
Q Consensus 408 ~~ 409 (410)
.+
T Consensus 435 ~~ 436 (456)
T PRK09451 435 EL 436 (456)
T ss_pred CE
Confidence 54
No 149
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.32 E-value=9e-11 Score=100.52 Aligned_cols=225 Identities=16% Similarity=0.180 Sum_probs=148.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
++.+||+|-= .+|||.. |||..|+|+|||.|+.+...+ -++|.-+ ++.+.+++++ +|.++..-
T Consensus 3 ~~~viIPAR~--~STRLpg------KPLadI~GkpmI~rV~e~a~~s~~~rvvVATD-de~I~~av~~----~G~~avmT 69 (247)
T COG1212 3 KFVVIIPARL--ASTRLPG------KPLADIGGKPMIVRVAERALKSGADRVVVATD-DERIAEAVQA----FGGEAVMT 69 (247)
T ss_pred ceEEEEecch--hcccCCC------CchhhhCCchHHHHHHHHHHHcCCCeEEEEcC-CHHHHHHHHH----hCCEEEec
Confidence 6889999998 8999977 999999999999999999886 3444433 3455666654 45555555
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--CChHHHHHHHHhcCCceEEEEEecC-ccc--ccccceEEEc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTILVIKVS-AES--ASQFGELVAD 158 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--~~l~~~l~~~~~~~~~~~l~~~~~~-~~~--~~~~~~v~~d 158 (410)
..+...|| +.+..+.+.+.-...+-++=+-||.++- ..+..+++...+.+++++.+..+.. .++ ...--.+..|
T Consensus 70 ~~~h~SGT-dR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d 148 (247)
T COG1212 70 SKDHQSGT-DRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLD 148 (247)
T ss_pred CCCCCCcc-HHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEc
Confidence 55667777 4555555555322234556678999863 3478888877766666555555542 222 1222335567
Q ss_pred CCCCcEEEEecCCCCc-------cccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeec
Q 015259 159 PDTNELLHYTEKPETF-------VSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLD 231 (410)
Q Consensus 159 ~~~~~v~~i~ekp~~~-------~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 231 (410)
.+++-+.|...|-.. ..-+...|+|.|++.+++.+........+.. -+
T Consensus 149 -~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~----------------------E~-- 203 (247)
T COG1212 149 -KEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKI----------------------ES-- 203 (247)
T ss_pred -CCCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHH----------------------HH--
Confidence 568999998875311 2446678999999999887776543322110 00
Q ss_pred cchhccccCCCceeEEecccee-eecCCccchhhhhHHHHh
Q 015259 232 QDILSPLAGKKQLYTYETMDFW-EQIKTPGMSLKCSGLYLA 271 (410)
Q Consensus 232 ~d~l~~l~~~~~i~~~~~~g~~-~~i~t~~~~~~an~~~~~ 271 (410)
-+-|+.|-.+.+|.+....... ..|||++|+.++.+.+..
T Consensus 204 LEQLR~Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 204 LEQLRVLENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred HHHHHHHHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 2334444456688888877655 889999999998876643
No 150
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.32 E-value=1.4e-11 Score=106.19 Aligned_cols=76 Identities=28% Similarity=0.367 Sum_probs=44.2
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-------eeEECCCCEECCCCEE-------------EeeEE
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-------SCIILDGVEIMENAVV-------------TNAIV 350 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-------~~~i~~~~~i~~~~~i-------------~~~~i 350 (410)
.|+|.+.|.|+|.|+++++|++.++||++++|+++++|. .+.||.++.|-..+.| ...+|
T Consensus 5 ~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~I 84 (260)
T COG1043 5 KIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLII 84 (260)
T ss_pred ccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEE
Confidence 344555555555555555555555555555554444443 3555555555555555 24788
Q ss_pred CCCCEECCCcEEccCC
Q 015259 351 GWKSSIGRWSRVQAEG 366 (410)
Q Consensus 351 ~~~~~i~~~~~i~~~~ 366 (410)
|+++.|.++++|..+.
T Consensus 85 G~~n~IRE~vTi~~GT 100 (260)
T COG1043 85 GDNNTIREFVTIHRGT 100 (260)
T ss_pred CCCCeEeeEEEEeccc
Confidence 8888888888887754
No 151
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.31 E-value=2.2e-11 Score=100.59 Aligned_cols=105 Identities=24% Similarity=0.404 Sum_probs=84.7
Q ss_pred eEEEEEecCCCCCCccc-cCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKGTRFR-PLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~-~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|.+||+||| +|+||. + =|||++++|+|||+|+++.+.+ |++....+....+.++.+ ++ ++++
T Consensus 1 m~~iiMAGG--rGtRmg~~-----EKPlleV~GkpLI~~v~~al~~~~d~i~v~isp~tp~t~~~~~~----~g--v~vi 67 (177)
T COG2266 1 MMAIIMAGG--RGTRMGRP-----EKPLLEVCGKPLIDRVLEALRKIVDEIIVAISPHTPKTKEYLES----VG--VKVI 67 (177)
T ss_pred CceEEecCC--cccccCCC-----cCcchhhCCccHHHHHHHHHHhhcCcEEEEeCCCCHhHHHHHHh----cC--ceEE
Confidence 568999999 999998 5 5999999999999999999998 888888777788888765 23 5555
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC--CChHHHHHHHH
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS--FPLPEMLDAHR 131 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~--~~l~~~l~~~~ 131 (410)
. ....|...-+..+.+.+. .++|++++|+++- ..+..+++.+.
T Consensus 68 ~-tpG~GYv~Dl~~al~~l~----~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 68 E-TPGEGYVEDLRFALESLG----TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred E-cCCCChHHHHHHHHHhcC----CceEEEecccccCCHHHHHHHHHHHh
Confidence 4 445678889999999886 5999999999863 23666666554
No 152
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.29 E-value=1.3e-10 Score=103.99 Aligned_cols=199 Identities=15% Similarity=0.083 Sum_probs=129.4
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEee-
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR- 84 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~- 84 (410)
|||+|+| .++||. .|.+++++|+|||.|+++.+.+ .++|.... +.+.+..+ +++..+.+..
T Consensus 2 aiIpArG--~Skr~~------~Knl~~l~GkpLi~~ti~~a~~s~~~d~IvVstd~-~~i~~~a~----~~g~~v~~~r~ 68 (222)
T TIGR03584 2 AIIPARG--GSKRIP------RKNIKPFCGKPMIAYSIEAALNSGLFDKVVVSTDD-EEIAEVAK----SYGASVPFLRP 68 (222)
T ss_pred EEEccCC--CCCCCC------CccchhcCCcCHHHHHHHHHHhCCCCCEEEEeCCC-HHHHHHHH----HcCCEeEEeCh
Confidence 7999999 999994 4999999999999999999987 33333333 34444443 3455554432
Q ss_pred ---CCCCCCcHHHHHHhHHHhcc-cCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEc
Q 015259 85 ---EDKPHGSAGALYNFRDLIME-DNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVAD 158 (410)
Q Consensus 85 ---~~~~~g~~~~l~~~~~~l~~-~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d 158 (410)
.....|..++++.+.+.+.. ...+.++++.||.++ ..++..+++.+.+.+++..+.+.+. ..+..+.. ..+
T Consensus 69 ~~l~~d~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~--~~~~~~~~-~~~ 145 (222)
T TIGR03584 69 KELADDFTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSF--AFPIQRAF-KLK 145 (222)
T ss_pred HHHcCCCCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeecc--CCChHHhe-EEC
Confidence 13466788999998887742 124679999999996 3569999998887667766666554 22222222 333
Q ss_pred CCCCcEEEEecC------CCCccccceeeeEEEEcHHHHHHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeecc
Q 015259 159 PDTNELLHYTEK------PETFVSDLINCGVYVFTPDIFNAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQ 232 (410)
Q Consensus 159 ~~~~~v~~i~ek------p~~~~~~l~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (410)
+++++..+... .+.+.....+..+|+++++.+..-.
T Consensus 146 -~~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~~~------------------------------------- 187 (222)
T TIGR03584 146 -ENGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLESG------------------------------------- 187 (222)
T ss_pred -CCCcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHhcC-------------------------------------
Confidence 34555444321 1122233457899999998763210
Q ss_pred chhccccCCCceeEEecc-ceeeecCCccchhhhhHH
Q 015259 233 DILSPLAGKKQLYTYETM-DFWEQIKTPGMSLKCSGL 268 (410)
Q Consensus 233 d~l~~l~~~~~i~~~~~~-g~~~~i~t~~~~~~an~~ 268 (410)
..+ .+.+..|..+ ....||++++|+..|...
T Consensus 188 ~~~-----~~~~~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 188 PIF-----SPHSIPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred Ccc-----CCCcEEEEeCccceeCCCCHHHHHHHHHH
Confidence 011 3455666554 358999999999887653
No 153
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=2.8e-11 Score=121.26 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=71.4
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeee
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGIT 375 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~ 375 (410)
+.|++++.|++++.|.++++||+++.||.++.+.+++|++++.|++.+.+.+++|+++|.||.++.+.+... ... +.+
T Consensus 323 ~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~-~~~-~~~ 400 (482)
T PRK14352 323 SEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDG-VNK-HRT 400 (482)
T ss_pred CEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEecccc-ccC-CCC
Confidence 334444444444444444555555555555555556666666666666666777888888888777654211 111 127
Q ss_pred EECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 376 ILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 376 ~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+||++++||.++.+ .+++|++|++|..++++..+
T Consensus 401 ~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~~ 441 (482)
T PRK14352 401 TIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGAL 441 (482)
T ss_pred eECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCcE
Confidence 88888888888776 68889999999999888753
No 154
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.28 E-value=2.6e-11 Score=120.95 Aligned_cols=113 Identities=19% Similarity=0.270 Sum_probs=77.5
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceee
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGI 374 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~ 374 (410)
++.|++++.|+++|.|.+++.||++|+|+.++.|.+++|++++.+++.+.+.+++|+++|.||.++.+.+... .... .
T Consensus 316 ~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~-~~~~-~ 393 (458)
T PRK14354 316 ESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDG-KNKF-K 393 (458)
T ss_pred CCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeeccccc-cccc-C
Confidence 3456666666666666666777777777777777777777777777777777777777777777766643210 0011 1
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
++||++++||.++.+ ++++|++|++|..++|+..+
T Consensus 394 ~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~ 435 (458)
T PRK14354 394 TIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDAL 435 (458)
T ss_pred CEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCE
Confidence 667777777777665 68889999999999998754
No 155
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.26 E-value=3.3e-11 Score=106.22 Aligned_cols=111 Identities=23% Similarity=0.380 Sum_probs=82.3
Q ss_pred CCCCCCCceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccC
Q 015259 1 MGSSEDDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNEL 76 (410)
Q Consensus 1 ~~~~~~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~ 76 (410)
|+++| .+.+|||||| .|+||+. ||+|++++|+|||+|+++.+.. ++|++... +.+.....
T Consensus 2 ~~~~~--~~~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~~~~ivvv~~~~-~~~~~~~~------ 65 (200)
T PRK02726 2 KTVKN--NLVALILAGG--KSSRMGQ-----DKALLPWQGVPLLQRVARIAAACADEVYIITPWP-ERYQSLLP------ 65 (200)
T ss_pred CCcCC--CceEEEEcCC--CcccCCC-----CceeeEECCEeHHHHHHHHHHhhCCEEEEECCCH-HHHHhhcc------
Confidence 56666 6899999999 9999975 8999999999999999999976 77776532 23222211
Q ss_pred CccEEEee-CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHH
Q 015259 77 RIPVRYLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHR 131 (410)
Q Consensus 77 ~~~i~~i~-~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~ 131 (410)
..+.++. .....|..++++.+.+.+. .+.++|+.||.++ . ..+..+++...
T Consensus 66 -~~~~~i~~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 66 -PGCHWLREPPPSQGPLVAFAQGLPQIK---TEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred -CCCeEecCCCCCCChHHHHHHHHHhCC---CCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 1344443 2445789999999999885 3789999999985 3 34777777653
No 156
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.25 E-value=2.4e-11 Score=120.90 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=50.0
Q ss_pred cEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE----
Q 015259 314 VSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV---- 389 (410)
Q Consensus 314 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v---- 389 (410)
+.||++|+||+++.+.+++|++++.+++.+.+.+++|+++|.||+++.+.... ......++||++++||.++++
T Consensus 325 ~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~--~~~~~~~~Igd~~~ig~~~~i~~gv 402 (448)
T PRK14357 325 TVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYD--GKKKNPTFIEDGAFIGSNSSLVAPV 402 (448)
T ss_pred ccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCccccccc--ccccCCcEECCCCEECCCCEEeCCc
Confidence 33333333333333333344444444333334444555555555544432110 000011677887777777766
Q ss_pred ---cceEEcCCcEEcccCCCccc
Q 015259 390 ---TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 390 ---~~~~v~~~~~v~~~~~~~~~ 409 (410)
+++.|++|++|.+++++..+
T Consensus 403 ~Ig~~~~i~ag~~v~~~v~~~~~ 425 (448)
T PRK14357 403 RIGKGALIGAGSVITEDVPPYSL 425 (448)
T ss_pred EECCCCEEcCCCEECCcCCCCcE
Confidence 68888999999999988754
No 157
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.25 E-value=2.6e-11 Score=105.28 Aligned_cols=102 Identities=25% Similarity=0.427 Sum_probs=77.6
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
+.+|||||| .|+||++ ||+|++++|+|||+|+++.+.. |+|++...... + . ..+ +.++.
T Consensus 1 ~~~iILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~l~~~~~~iivv~~~~~~~---~-~----~~~--~~~v~ 63 (181)
T cd02503 1 ITGVILAGG--KSRRMGG-----DKALLELGGKPLLEHVLERLKPLVDEVVISANRDQER---Y-A----LLG--VPVIP 63 (181)
T ss_pred CcEEEECCC--ccccCCC-----CceeeEECCEEHHHHHHHHHHhhcCEEEEECCCChHH---H-h----hcC--CcEee
Confidence 468999999 9999986 9999999999999999999986 77777665433 1 1 122 33443
Q ss_pred -CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHH
Q 015259 85 -EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAH 130 (410)
Q Consensus 85 -~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~ 130 (410)
+....|..++++.+++.+. .+.++++.||+++ ...+..+++.+
T Consensus 64 ~~~~~~G~~~si~~~l~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 64 DEPPGKGPLAGILAALRAAP---ADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCCCCCCHHHHHHHHHhcC---CCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 2356789999999988875 4789999999985 33477777655
No 158
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.25 E-value=1.8e-10 Score=93.38 Aligned_cols=87 Identities=18% Similarity=0.160 Sum_probs=59.2
Q ss_pred EccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEe-----eeEECCCCEECCCCEEE-----e----eEECCCCEEC
Q 015259 292 IIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI-----SCIILDGVEIMENAVVT-----N----AIVGWKSSIG 357 (410)
Q Consensus 292 i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-----~~~i~~~~~i~~~~~i~-----~----~~i~~~~~i~ 357 (410)
+.+.+++.+++.|++|+.|.++++|..+++||+++.|. +++|+++|.|++++.|. . +.|+++|+||
T Consensus 4 i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~~~l~G~~~~pV~IG~~~~IG 83 (147)
T cd04649 4 IADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIMGTLSGGGNNVISIGKRCLLG 83 (147)
T ss_pred ecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEEEECCCCcccCEEECCCCEEC
Confidence 44555555666666666666556666666666655554 46678888888888876 2 5677777777
Q ss_pred CCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 358 RWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 358 ~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.++.| + +.||+++.||+|++|
T Consensus 84 ~ga~I-g----------v~IG~~~vIGaGsvV 104 (147)
T cd04649 84 ANSGI-G----------ISLGDNCIVEAGLYV 104 (147)
T ss_pred CCCEE-e----------EEECCCCEECCCCEE
Confidence 77777 3 788888888888887
No 159
>PRK10502 putative acyl transferase; Provisional
Probab=99.24 E-value=7.1e-11 Score=102.22 Aligned_cols=96 Identities=19% Similarity=0.168 Sum_probs=67.8
Q ss_pred eEECCCCEECCCcEEC--CCcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE----------------eeEECCCC
Q 015259 296 VYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLI---SCIILDGVEIMENAVVT----------------NAIVGWKS 354 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~----------------~~~i~~~~ 354 (410)
+.||+++.|.+++.|. .++.||++|.|++++.|. .++||++|.|++++.|. ..+|+++|
T Consensus 52 a~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~ 131 (182)
T PRK10502 52 AKIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGC 131 (182)
T ss_pred cccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCc
Confidence 3555555566655554 257788888888888885 57788888888888773 25788888
Q ss_pred EECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 355 SIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 355 ~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
.||.++.|.++ +.||+++.|++++++.+. +.+++++.
T Consensus 132 ~Ig~~a~I~~G---------v~Ig~~~vIga~svV~~~-v~~~~v~~ 168 (182)
T PRK10502 132 WLAADVFVAPG---------VTIGSGAVVGARSSVFKS-LPANTICR 168 (182)
T ss_pred EEcCCCEEcCC---------CEECCCCEECCCCEEecc-cCCCcEEE
Confidence 88888888776 788888888888877442 44555443
No 160
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.24 E-value=4.8e-11 Score=104.49 Aligned_cols=113 Identities=14% Similarity=0.127 Sum_probs=75.4
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
.+|||||| .|+||+. ||.|++++|+|||+|+++.+.+ ++|++....+.+.......... ..+.++.
T Consensus 2 ~~vILAgG--~s~Rmg~-----~K~ll~~~g~~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~~~~~~~~~~--~~~~~~~ 72 (190)
T TIGR03202 2 VAIYLAAG--QSRRMGE-----NKLALPLGETTLGSASLKTALSSRLSKVIVVIGEKYAHLSWLDPYLLAD--ERIMLVC 72 (190)
T ss_pred eEEEEcCC--ccccCCC-----CceeceeCCccHHHHHHHHHHhCCCCcEEEEeCCccchhhhhhHhhhcC--CCeEEEE
Confidence 58999999 9999986 8999999999999999976543 6666654432221111110011 1234332
Q ss_pred -CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHH
Q 015259 85 -EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHR 131 (410)
Q Consensus 85 -~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~ 131 (410)
++...|.+++++.+++.+.....+.++++.||.++ . ..+..+++...
T Consensus 73 ~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~ 122 (190)
T TIGR03202 73 CRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAK 122 (190)
T ss_pred CCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHh
Confidence 34445888999999887642234789999999995 3 33677776544
No 161
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.24 E-value=4.9e-11 Score=119.19 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=86.6
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEcc---
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA--- 364 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~--- 364 (410)
++.+.+++.|++++.|+++|.|. +++||++|.|++++.|.+++|++++.|++++.+. +++|++++.|++++.|.+
T Consensus 282 ~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i 360 (481)
T PRK14358 282 GVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARL 360 (481)
T ss_pred CcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCcee
Confidence 56666777778888888888885 7899999999999999999999999999999997 799999999999766533
Q ss_pred --CCC--CCcceeeeEECCCCEECCCcEEc--------ceEEcCCcEEccc
Q 015259 365 --EGD--FNAKLGITILGEAVGVEDEVVVT--------NSIVLPNKTLNVS 403 (410)
Q Consensus 365 --~~~--~~~~~~~~~i~~~~~i~~~~~v~--------~~~v~~~~~v~~~ 403 (410)
+.. +....+.++||++|.||+++++. +++|+.++.|+.+
T Consensus 361 ~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~ 411 (481)
T PRK14358 361 DAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSN 411 (481)
T ss_pred cCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCC
Confidence 211 22334558888888888888773 2455555555443
No 162
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.24 E-value=1.3e-10 Score=94.16 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=17.5
Q ss_pred eEECCCCEECCCcEE-----cceEEcCCcEEccc
Q 015259 375 TILGEAVGVEDEVVV-----TNSIVLPNKTLNVS 403 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-----~~~~v~~~~~v~~~ 403 (410)
+.||++|+||+++.| .+|+|++|++|.++
T Consensus 74 V~IG~~~~IG~ga~Igv~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 74 ISIGKRCLLGANSGIGISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred EEECCCCEECCCCEEeEEECCCCEECCCCEEeCC
Confidence 566666666666666 45556666655544
No 163
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.24 E-value=4.8e-11 Score=116.12 Aligned_cols=95 Identities=21% Similarity=0.306 Sum_probs=77.3
Q ss_pred CcEEccCeEECCCCEECCCcEEC---CCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIG---PNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
.+.+++.+.| .++.|+++|.|+ .+++||++|+|+++|.|.+|+|+++|.|+++|+|.+|+|++++.|+.++.+.++
T Consensus 282 ~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~~ 360 (380)
T PRK05293 282 PQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGGG 360 (380)
T ss_pred CCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcCC
Confidence 3445555555 245566666554 279999999999999999999999999999999999999999999999999886
Q ss_pred CCCCcceeeeEECCCCEECCCcEE
Q 015259 366 GDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 366 ~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
... .++||+++.|++++++
T Consensus 361 ~~~-----~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 361 KEV-----ITVIGENEVIGVGTVI 379 (380)
T ss_pred Cce-----eEEEeCCCCCCCCcEe
Confidence 443 2579999998888765
No 164
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.23 E-value=1.9e-10 Score=101.97 Aligned_cols=56 Identities=34% Similarity=0.411 Sum_probs=30.5
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEee-eEECCCCEECCCCEE
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVV 345 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i 345 (410)
+.+.+++.|++++.|++++.|.+++.||++|.|++++.|.+ ++|+++|.|+++++|
T Consensus 14 ~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i 70 (205)
T cd03352 14 AVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVI 70 (205)
T ss_pred CEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEE
Confidence 33444444555555555555555555555555555555543 566666666666555
No 165
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.23 E-value=7.2e-11 Score=117.76 Aligned_cols=35 Identities=14% Similarity=0.280 Sum_probs=27.9
Q ss_pred eEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||+++++|.++.+ .+++|++|++|..++++..+
T Consensus 399 ~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~ 440 (456)
T PRK14356 399 TVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSL 440 (456)
T ss_pred CEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcE
Confidence 677777777777776 58888999999999888754
No 166
>PLN02694 serine O-acetyltransferase
Probab=99.23 E-value=5.2e-11 Score=107.82 Aligned_cols=93 Identities=24% Similarity=0.257 Sum_probs=65.9
Q ss_pred CeEECCCCEECCCcEECC--CcEECCCcEECCCCEEee-eEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcc
Q 015259 295 DVYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLIS-CIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAK 371 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~ 371 (410)
++-|++++.|++++.|.. +++||++|+||++|.|.+ +++|.. +..+..++++|+++|.||.++.|.++
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~~r~piIGd~V~IGagA~Ilgg------ 230 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGT---GKACGDRHPKIGDGVLIGAGATILGN------ 230 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCc---ccccCCCccEECCCeEECCeeEECCC------
Confidence 345556666666665553 677777777777777743 223321 34455678999999999999999877
Q ss_pred eeeeEECCCCEECCCcEEcceEEcCCcEE
Q 015259 372 LGITILGEAVGVEDEVVVTNSIVLPNKTL 400 (410)
Q Consensus 372 ~~~~~i~~~~~i~~~~~v~~~~v~~~~~v 400 (410)
++||+++.|++|++|.+. |.+++++
T Consensus 231 ---i~IGd~a~IGAgSVV~kd-VP~~~~v 255 (294)
T PLN02694 231 ---VKIGEGAKIGAGSVVLID-VPPRTTA 255 (294)
T ss_pred ---CEECCCCEECCCCEECCc-CCCCcEE
Confidence 999999999999999543 4555555
No 167
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.22 E-value=1.6e-10 Score=85.87 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=60.8
Q ss_pred CCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcc-eEE
Q 015259 317 SANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN-SIV 394 (410)
Q Consensus 317 g~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~-~~v 394 (410)
+++++|++++.|+ +++|+++|.|+++++|.++++++++.|++++.|.+ +++++++.|++++.+.. +++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~----------sii~~~~~v~~~~~~~~~~~i 72 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKS----------SIVGWNSTVGRWTRLENVTVL 72 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeC----------CEEeCCCEECCCcEEecCEEE
Confidence 3444444444442 45668999999999999999999999999999998 89999999999999965 788
Q ss_pred cCCcEEc
Q 015259 395 LPNKTLN 401 (410)
Q Consensus 395 ~~~~~v~ 401 (410)
+.+..|+
T Consensus 73 g~~~~i~ 79 (80)
T cd05824 73 GDDVTIK 79 (80)
T ss_pred CCceEEC
Confidence 8887764
No 168
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.22 E-value=2e-10 Score=100.28 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=70.1
Q ss_pred CeEECCCCEECCCcEE----CCCcEECCCcEECCCCEEe---eeEECCCCEECCCCEEEe--------------------
Q 015259 295 DVYVHPSAKIHPTAKI----GPNVSISANARIGAGVRLI---SCIILDGVEIMENAVVTN-------------------- 347 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i----~~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~-------------------- 347 (410)
...+|+++.++.++.+ .+...||++|.|++++.|. ++.||++|.|++++.|.+
T Consensus 43 ~I~iG~~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~ 122 (192)
T PRK09677 43 SINFGEGFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPD 122 (192)
T ss_pred eEEECCceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChh
Confidence 3445666666666655 3467788888888888775 577888888888877752
Q ss_pred --------eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 348 --------AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 348 --------~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
++|+++|+||.++.|.++ ++||++|+|+++++|.++ +.+++++..
T Consensus 123 ~~~~~~~~v~Ig~~~~ig~~~~i~~g---------~~Ig~~~~Iga~s~v~~~-i~~~~~~~G 175 (192)
T PRK09677 123 MRTLESSAVVIGQRVWIGENVTILPG---------VSIGNGCIVGANSVVTKS-IPENTVIAG 175 (192)
T ss_pred hcccccCCeEEcCCcEECCCCEEcCC---------CEECCCCEECCCCEECcc-cCCCcEEEe
Confidence 467888888888887776 888888888888888654 566666644
No 169
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.22 E-value=1.2e-10 Score=101.54 Aligned_cols=106 Identities=16% Similarity=0.294 Sum_probs=76.7
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEee
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLR 84 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~ 84 (410)
+.+|||||| .|+||+. .||+|++++|+|||+|+++.+.. |+|++...... +.. ..++ +.++.
T Consensus 1 ~~~iILAgG--~s~Rmg~----~~K~l~~i~g~pll~~~l~~l~~~~~~ivv~~~~~~~~---~~~---~~~~--~~~i~ 66 (186)
T TIGR02665 1 ISGVILAGG--RARRMGG----RDKGLVELGGKPLIEHVLARLRPQVSDLAISANRNPER---YAQ---AGFG--LPVVP 66 (186)
T ss_pred CeEEEEcCC--ccccCCC----CCCceeEECCEEHHHHHHHHHHhhCCEEEEEcCCCHHH---Hhh---ccCC--CcEEe
Confidence 468999999 9999973 49999999999999999999876 66666544322 111 1122 23333
Q ss_pred C--CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHH
Q 015259 85 E--DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHR 131 (410)
Q Consensus 85 ~--~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~ 131 (410)
. ....|++++++.+.+.+. .+.++++.||.++ + ..+..+++.+.
T Consensus 67 ~~~~~~~g~~~si~~al~~~~---~~~vlv~~~D~P~i~~~~i~~l~~~~~ 114 (186)
T TIGR02665 67 DALADFPGPLAGILAGLRWAG---TDWVLTVPCDTPFLPEDLVARLAAALE 114 (186)
T ss_pred cCCCCCCCCHHHHHHHHHhcC---CCeEEEEecCCCcCCHHHHHHHHHHhh
Confidence 2 345799999999988774 4689999999974 3 33677776654
No 170
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.21 E-value=9.1e-11 Score=106.34 Aligned_cols=95 Identities=21% Similarity=0.231 Sum_probs=67.2
Q ss_pred ccCeEECCCCEECCCcEEC--CCcEECCCcEECCCCEEeeeEECCCCEECC---CCEEEeeEECCCCEECCCcEEccCCC
Q 015259 293 IGDVYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLISCIILDGVEIME---NAVVTNAIVGWKSSIGRWSRVQAEGD 367 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~i~~~~~i~~~~~ 367 (410)
...+.|++++.|++++.|. .+++||++|+||++|.| +.++++|. .+...+++|+++|.||.+|.|.++
T Consensus 139 ~~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I-----~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilgg-- 211 (273)
T PRK11132 139 AFQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSI-----LQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGN-- 211 (273)
T ss_pred eeeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEE-----cCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCC--
Confidence 3455566666666666665 24567777777777666 55555553 222346899999999999999998
Q ss_pred CCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 368 FNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 368 ~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.||++++||+|++|.+. |.+++++..
T Consensus 212 -------v~IG~~a~IGAgSvV~~d-Vp~~~~v~G 238 (273)
T PRK11132 212 -------IEVGRGAKIGAGSVVLQP-VPPHTTAAG 238 (273)
T ss_pred -------CEECCCCEECCCCEECcc-cCCCcEEEe
Confidence 999999999999999553 566666643
No 171
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.21 E-value=2.1e-10 Score=103.91 Aligned_cols=15 Identities=13% Similarity=0.138 Sum_probs=6.7
Q ss_pred eEECCCCEECCCcEE
Q 015259 375 TILGEAVGVEDEVVV 389 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v 389 (410)
++||++|.||.++++
T Consensus 177 viIgDnv~IGa~s~I 191 (272)
T PRK11830 177 VIIEDNCFIGARSEV 191 (272)
T ss_pred eEEcCCCEECCCCEE
Confidence 444444444444443
No 172
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.20 E-value=5.5e-11 Score=102.57 Aligned_cols=90 Identities=24% Similarity=0.378 Sum_probs=65.7
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCC---c
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFN---A 370 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~---~ 370 (410)
.+.|+|.|.|.+++.|++++.||+.|.||+++.| ++++.++++++|. .+.||++++|-+++.|+..++.. .
T Consensus 3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~i-----g~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykg 77 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEI-----GDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKG 77 (260)
T ss_pred ccccCcceeeCCCCCcCCCCEECceEEECCCcEE-----CCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCC
Confidence 4568888888888888888888888888888777 8888888888888 78899999988888888754411 1
Q ss_pred ceeeeEECCCCEECCCcEE
Q 015259 371 KLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v 389 (410)
.--..+||+++.|.+++++
T Consensus 78 e~T~l~IG~~n~IRE~vTi 96 (260)
T COG1043 78 EPTRLIIGDNNTIREFVTI 96 (260)
T ss_pred CceEEEECCCCeEeeEEEE
Confidence 1111455555555555555
No 173
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.20 E-value=1.5e-10 Score=90.66 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=62.9
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
++.+ .+++||+++.|+ ++.|. +++|+++|.|++++.|.+|+|++++.|+.++.+.+++|++++.|++++.+.+.
T Consensus 7 ~~~i-~~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~ 80 (104)
T cd04651 7 RGEV-KNSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGD 80 (104)
T ss_pred CCEE-EeEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCC
Confidence 4555 357788888887 77786 88999999999999999999999999999999999999999999999888773
No 174
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.20 E-value=2.3e-10 Score=99.88 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=57.2
Q ss_pred CCcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE-------------------eeEECCCCEECCCcEEccCCCCC
Q 015259 312 PNVSISANARIGAGVRLI---SCIILDGVEIMENAVVT-------------------NAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-------------------~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
.++.||+++.|+.+|.|. +..||++|.|+++|.|. ..+|+++|+||.++.|.++
T Consensus 74 ~ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~~h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~g---- 149 (203)
T PRK09527 74 SNIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPG---- 149 (203)
T ss_pred CCcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeCCCCCChhhccccccccCCeEECCCcEECCCCEEcCC----
Confidence 345555555555555552 35667777777776664 2689999999999998887
Q ss_pred cceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 370 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.||++++|+++++|.+. |.+++++..
T Consensus 150 -----v~IG~~~vIgagsvV~kd-vp~~~v~~G 176 (203)
T PRK09527 150 -----VTIGDNSVIGAGSVVTKD-IPPNVVAAG 176 (203)
T ss_pred -----CEECCCCEECCCCEEccc-CCCCcEEEe
Confidence 899999999999999654 566666544
No 175
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.17 E-value=3.2e-10 Score=89.66 Aligned_cols=98 Identities=21% Similarity=0.238 Sum_probs=76.4
Q ss_pred eEECCCCEECCCcEECC--CcEECCCcEECCCCEEeee---EECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCc
Q 015259 296 VYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLISC---IILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNA 370 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~---~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~ 370 (410)
+.|++++.|++++.|.+ ++.||++|.|+++|.|.++ .++.++.+........++|+++|.|+.++.+..+
T Consensus 2 v~Ig~~~~I~~~~~i~~~~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~----- 76 (109)
T cd04647 2 ISIGDNVYIGPGCVISAGGGITIGDNVLIGPNVTIYDHNHDIDDPERPIEQGVTSAPIVIGDDVWIGANVVILPG----- 76 (109)
T ss_pred eEECCCcEECCCCEEecCCceEECCCCEECCCCEEECCCCCCCccccccccccccCCeEECCCCEECCCCEEcCC-----
Confidence 56788888888888876 7889999999999998753 3444444444555668999999999999999776
Q ss_pred ceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 371 KLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
+.|++++.|++++.+.. .+.++.++...
T Consensus 77 ----~~ig~~~~i~~~~~v~~-~i~~~~i~~g~ 104 (109)
T cd04647 77 ----VTIGDGAVVGAGSVVTK-DVPPNSIVAGN 104 (109)
T ss_pred ----CEECCCCEECCCCEEee-ECCCCCEEEcc
Confidence 89999999999999974 56777776443
No 176
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.17 E-value=2.6e-10 Score=113.38 Aligned_cols=115 Identities=19% Similarity=0.275 Sum_probs=89.9
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEcc----
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQA---- 364 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---- 364 (410)
..+.+.+.|++++.|++++.|++++.||++|+|++++.|.+++||++|.|+++++|. +++|+++|.||+++.+.+
T Consensus 263 ~~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~ 342 (446)
T PRK14353 263 VFFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLG 342 (446)
T ss_pred EEECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEEC
Confidence 456677888899999999999999999999999999999999999999999999998 899999999999987743
Q ss_pred -CCC--CCcceeeeEECCCCEECC-------------CcEE-cceEEcCCcEEcccC
Q 015259 365 -EGD--FNAKLGITILGEAVGVED-------------EVVV-TNSIVLPNKTLNVSV 404 (410)
Q Consensus 365 -~~~--~~~~~~~~~i~~~~~i~~-------------~~~v-~~~~v~~~~~v~~~~ 404 (410)
+.. +....+.++||++|.||+ +++| .+++|+++++|.+++
T Consensus 343 ~~~~i~~~~~i~~~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~ 399 (446)
T PRK14353 343 EGAKVNHLTYIGDATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPV 399 (446)
T ss_pred CCCEECCeeEEcCcEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCC
Confidence 110 112233467777777776 3666 577777777776643
No 177
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.17 E-value=4e-10 Score=87.84 Aligned_cols=91 Identities=26% Similarity=0.402 Sum_probs=67.3
Q ss_pred eEECCCCEECCCcEECC--CcEECCCcEECCCCEEeeeEECCCCEECCCCE---EEeeEECCCCEECCCcEEccCCCCCc
Q 015259 296 VYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLISCIILDGVEIMENAV---VTNAIVGWKSSIGRWSRVQAEGDFNA 370 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~~~~~~~ 370 (410)
+.|++++.|++++.|.. +++|++++.||+++.| ++++.|++++. +..++|++++.|+.++.+..+
T Consensus 3 ~~i~~~~~ig~~~~i~~~~~~~ig~~~~Ig~~~~i-----~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~----- 72 (101)
T cd03354 3 IDIHPGAKIGPGLFIDHGTGIVIGETAVIGDNCTI-----YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILGN----- 72 (101)
T ss_pred eEeCCCCEECCCEEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccCCcCCCCEECCCcEEcCCCEEECc-----
Confidence 34555555555555553 4567777777777665 67777777775 568899999999999999887
Q ss_pred ceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 371 KLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 371 ~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+.|+++++|++++.+.+. +.++.++.
T Consensus 73 ----~~Ig~~~~i~~~~~i~~~-~~~~~~~~ 98 (101)
T cd03354 73 ----ITIGDNVKIGANAVVTKD-VPANSTVV 98 (101)
T ss_pred ----CEECCCCEECCCCEECcc-cCCCCEEE
Confidence 899999999999999654 56666554
No 178
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.16 E-value=5.3e-10 Score=94.91 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=51.1
Q ss_pred CcEECCCcEECCCCEEee----eEECCCCEECCCCEEEe-------------eEECCCCEECCCcEEccCCCCCcce-ee
Q 015259 313 NVSISANARIGAGVRLIS----CIILDGVEIMENAVVTN-------------AIVGWKSSIGRWSRVQAEGDFNAKL-GI 374 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~~----~~i~~~~~i~~~~~i~~-------------~~i~~~~~i~~~~~i~~~~~~~~~~-~~ 374 (410)
+..||+++.|++++.|.. +.||++|.|+++|+|.. ++|++++.|++++.+... .. ..
T Consensus 21 ~I~ig~~~~I~~~~~I~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~-----~Ig~~ 95 (161)
T cd03359 21 NIVLNGKTIIQSDVIIRGDLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAA-----QIGSY 95 (161)
T ss_pred CEEECCceEEcCCCEEeCCCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEee-----EEcCC
Confidence 555666666666666653 57888888888888863 467888888887776551 00 00
Q ss_pred eEECCCCEECCCcEE-cceEEcCCcEEccc
Q 015259 375 TILGEAVGVEDEVVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~ 403 (410)
+.|+++++|++++.+ .++.|+++++|..+
T Consensus 96 v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~ 125 (161)
T cd03359 96 VHIGKNCVIGRRCIIKDCVKILDGTVVPPD 125 (161)
T ss_pred cEECCCCEEcCCCEECCCcEECCCCEECCC
Confidence 344444444444444 35555566666554
No 179
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.15 E-value=2.1e-10 Score=92.25 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=71.0
Q ss_pred ECCCCEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeE
Q 015259 298 VHPSAKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITI 376 (410)
Q Consensus 298 i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~ 376 (410)
|++++.|++++.|++++.||++|+|++++.|. +++|+++|.|++++.+.++.+... .+..++.+.+ ++
T Consensus 1 ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~-~~~~~~~~~~----------~~ 69 (119)
T cd03358 1 IGDNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRS-KIYRKWELKG----------TT 69 (119)
T ss_pred CCCCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCcc-ccccccccCC----------cE
Confidence 46677777777888888888888888888885 788899999999988887644443 3333444444 55
Q ss_pred ECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 377 LGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 377 i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
||++++|++++.+ .++.|++++++..++++..+
T Consensus 70 Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~i~~~~~ 109 (119)
T cd03358 70 VKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYAL 109 (119)
T ss_pred ECCCcEECcCCEEeCCcEECCCCEEccCCEEeCcCCCCeE
Confidence 5555555555555 46677777778778877643
No 180
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.13 E-value=6.9e-10 Score=95.02 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=39.3
Q ss_pred eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEccc
Q 015259 347 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVS 403 (410)
Q Consensus 347 ~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~ 403 (410)
.++|+++|+||.++.|.++ +.||++|+||+++++.+. |.+++++..+
T Consensus 118 ~v~IG~~~~Ig~~a~I~~g---------v~Ig~~~~VgagavV~~~-vp~~~vv~G~ 164 (169)
T cd03357 118 PITIGDNVWIGGGVIILPG---------VTIGDNSVIGAGSVVTKD-IPANVVAAGN 164 (169)
T ss_pred CcEeCCCEEECCCCEEeCC---------CEECCCCEECCCCEEccc-cCCCcEEEcc
Confidence 5789999999999998887 899999999999999764 7777776554
No 181
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.13 E-value=1.5e-09 Score=95.64 Aligned_cols=126 Identities=19% Similarity=0.265 Sum_probs=87.1
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEeccc-chHHHHHHHHhhcccCCcc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFY-EEREFALYVSSISNELRIP 79 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~-~~~~i~~~~~~~~~~~~~~ 79 (410)
..+.+|||||| .|+||+. ..||.+++++|+||++|+|+.|.. |+|+++. ....+..+.+ ...+.+
T Consensus 3 ~~~~~vilAaG--~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~---~~~~~~ 74 (230)
T COG1211 3 MMVSAVILAAG--FGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK---LSADKR 74 (230)
T ss_pred ceEEEEEEcCc--cccccCC---CCCceEEEECCEEehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhh---hccCCe
Confidence 36899999999 9999998 999999999999999999999987 6777665 3333444432 122335
Q ss_pred EEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEec
Q 015259 80 VRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKV 144 (410)
Q Consensus 80 i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~ 144 (410)
+.++. .+..-.+|++.+++.+....++.|||..+==++ ...+.++++... +..+.+...+.
T Consensus 75 v~~v~--GG~~R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~alpv 137 (230)
T COG1211 75 VEVVK--GGATRQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAILALPV 137 (230)
T ss_pred EEEec--CCccHHHHHHHHHHHhhccCCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEEEeec
Confidence 66654 555678999999999974334556666664443 344778874332 33444555554
No 182
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.12 E-value=6.1e-09 Score=92.32 Aligned_cols=206 Identities=19% Similarity=0.229 Sum_probs=117.0
Q ss_pred eEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch-HHHHHHHHhhcccCCccEE
Q 015259 9 VVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE-REFALYVSSISNELRIPVR 81 (410)
Q Consensus 9 ~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~-~~i~~~~~~~~~~~~~~i~ 81 (410)
+.|||+||| .|+||+. ..||.+++++|+|+|.|+|+.|.+ |+|++.... +.+++.+.. ..+.
T Consensus 1 V~aIilAaG--~G~R~g~---~~pKQf~~l~Gkpvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~------~~v~ 69 (221)
T PF01128_consen 1 VAAIILAAG--SGSRMGS---GIPKQFLELGGKPVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK------KKVK 69 (221)
T ss_dssp EEEEEEESS---STCCTS---SS-GGGSEETTEEHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH------TTEE
T ss_pred CEEEEeCCc--cchhcCc---CCCCeeeEECCeEeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC------CCEE
Confidence 468999999 9999986 789999999999999999999987 666665443 445554443 3456
Q ss_pred EeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcC
Q 015259 82 YLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADP 159 (410)
Q Consensus 82 ~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~ 159 (410)
++. .+..-.+|++++++.+.... +.++|..|=-++ ...+.++++..++. ..+++...+. .+ .+...+
T Consensus 70 iv~--GG~tR~~SV~ngL~~l~~~~-d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~p~--~D----Tik~v~- 138 (221)
T PF01128_consen 70 IVE--GGATRQESVYNGLKALAEDC-DIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPALPV--TD----TIKRVD- 138 (221)
T ss_dssp EEE----SSHHHHHHHHHHCHHCTS-SEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEEE---SS----EEEEES-
T ss_pred Eec--CChhHHHHHHHHHHHHHcCC-CEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEEec--cc----cEEEEe-
Confidence 654 45567899999999987332 456666664443 34478888876542 3444454444 11 122344
Q ss_pred CCCcEEEEecCCCCccccceeee-EEEEcHHHH-HHhhhcccccccchhhhccchhHhhhhhccCCCCCeeeecc--chh
Q 015259 160 DTNELLHYTEKPETFVSDLINCG-VYVFTPDIF-NAIQGVSSQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQ--DIL 235 (410)
Q Consensus 160 ~~~~v~~i~ekp~~~~~~l~~~G-iy~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--d~l 235 (410)
+++.+...... +.+..+. =-.|+.+.+ +.++...... ..+-+ .++
T Consensus 139 ~~~~v~~tldR-----~~l~~~QTPQ~F~~~~l~~a~~~a~~~~--------------------------~~~tDdasl~ 187 (221)
T PF01128_consen 139 DDGFVTETLDR-----SKLWAVQTPQAFRFELLLEAYEKADEEG--------------------------FEFTDDASLV 187 (221)
T ss_dssp TTSBEEEEETG-----GGEEEEEEEEEEEHHHHHHHHHTHHHHT--------------------------HHHSSHHHHH
T ss_pred cCCcccccCCH-----HHeeeecCCCeecHHHHHHHHHHHHhcC--------------------------CCccCHHHHH
Confidence 45666665443 3333322 124555553 3333221000 01101 123
Q ss_pred ccccCCCceeEEeccceeeecCCccchhhhhHHH
Q 015259 236 SPLAGKKQLYTYETMDFWEQIKTPGMSLKCSGLY 269 (410)
Q Consensus 236 ~~l~~~~~i~~~~~~g~~~~i~t~~~~~~an~~~ 269 (410)
..+ +.+++..+-+..-+-|.+|+|+..|...+
T Consensus 188 ~~~--g~~v~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 188 EAA--GKKVAIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp HHT--TS-EEEEE--TTG----SHHHHHHHHHHH
T ss_pred HHc--CCCEEEEeCCCCceeECCHHHHHHHHHHh
Confidence 222 45777777655667789999998877654
No 183
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.10 E-value=6.9e-10 Score=94.10 Aligned_cols=93 Identities=28% Similarity=0.328 Sum_probs=59.4
Q ss_pred CeEECCCCEECCCcEECC--CcEECCCcEECCCCEEeeeEECCCCEECCC---CEEEeeEECCCCEECCCcEEccCCCCC
Q 015259 295 DVYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLISCIILDGVEIMEN---AVVTNAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~---~~i~~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
++.|++++.|++++.|.. +++|+++|+||++|.| +++++++.. .....++|+++|.|+.++.|.++
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I-----~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~---- 131 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTI-----YHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGN---- 131 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEE-----cCCCEECCCccccCCcCCEECCCcEEcCCCEEECC----
Confidence 344444444444444432 2455555555555444 333333321 11335799999999999999988
Q ss_pred cceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 370 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
++||+++.|+++++|.+. |.+++++..
T Consensus 132 -----v~IG~~~~Iga~s~V~~d-vp~~~~~~G 158 (162)
T TIGR01172 132 -----IEVGENAKIGANSVVLKD-VPPGATVVG 158 (162)
T ss_pred -----cEECCCCEECCCCEECCC-CCCCCEEEe
Confidence 999999999999999654 677777643
No 184
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.10 E-value=1.1e-09 Score=94.34 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=35.1
Q ss_pred eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 347 NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 347 ~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
.++|+++|+||.++.|.++ +.||++++|+++++|.+. |.+++++..
T Consensus 129 ~v~IGd~v~IG~~a~I~~g---------v~IG~~~vIgagsvV~~d-i~~~~i~~G 174 (183)
T PRK10092 129 PVTIGNNVWIGGRAVINPG---------VTIGDNVVVASGAVVTKD-VPDNVVVGG 174 (183)
T ss_pred CeEECCCcEECCCCEECCC---------CEECCCCEECCCCEEccc-cCCCcEEEe
Confidence 4678888888888888777 888888888888888554 566666644
No 185
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.09 E-value=9.2e-10 Score=85.37 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=64.4
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEcc
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (410)
++.+.++++|++++.|++++.|.+++.||++|+|+. .|.+|+|++++.++++++|.+++|++++.||+++.+.+
T Consensus 23 ~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~ 96 (101)
T cd05635 23 FAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSD 96 (101)
T ss_pred CCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCCCEecCcCEEeeeEECCCCEECCCceecc
Confidence 566777888888888888888888888888888864 57899999999999999999999999999999988765
No 186
>PRK10502 putative acyl transferase; Provisional
Probab=99.09 E-value=8.1e-10 Score=95.60 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=61.8
Q ss_pred EECCCcEECCCCEEe---eeEECCCCEECCCCEEE---eeEECCCCEECCCcEEccCCCC------CcceeeeEECCCCE
Q 015259 315 SISANARIGAGVRLI---SCIILDGVEIMENAVVT---NAIVGWKSSIGRWSRVQAEGDF------NAKLGITILGEAVG 382 (410)
Q Consensus 315 ~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~~~------~~~~~~~~i~~~~~ 382 (410)
.||+++.|.+++.|. +..||++|.|++++.|. .++|+++|.|++++.|..+... +...+..+||++|+
T Consensus 53 ~iG~~~~I~~~a~i~~~~~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~i~Igd~~~ 132 (182)
T PRK10502 53 KIGKGVVIRPSVRITYPWKLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHDYSDPHFDLNTAPIVIGEGCW 132 (182)
T ss_pred ccCCCcEEcCCEEEecCCeEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCCCcCCCcccccCCEEEcCCcE
Confidence 334444444444443 46678888888888886 5788888888888888654321 11223467777777
Q ss_pred ECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 383 VEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 383 i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
||+++++ ++++|+++++|.+++++..+
T Consensus 133 Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v 166 (182)
T PRK10502 133 LAADVFVAPGVTIGSGAVVGARSSVFKSLPANTI 166 (182)
T ss_pred EcCCCEEcCCCEECCCCEECCCCEEecccCCCcE
Confidence 7777766 56677777777777777643
No 187
>PRK10191 putative acyl transferase; Provisional
Probab=99.08 E-value=8.4e-10 Score=91.13 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=56.6
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEE--EeeEECCCCEECCCcEEccCC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVV--TNAIVGWKSSIGRWSRVQAEG 366 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i--~~~~i~~~~~i~~~~~i~~~~ 366 (410)
+.++.+.+.+++++.|+++ .+++|+++++||+++.| +++|+||+.... ..+.|+++|.||.++.+.++
T Consensus 41 g~~I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I-----~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~- 110 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTI-----RHGVTIGNRGADNMACPHIGNGVELGANVIILGD- 110 (146)
T ss_pred CcccCCCCEECCCeEECCC----CeEEECCCcEECCCCEE-----CCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCC-
Confidence 3445555666666666653 13444444444444433 333333332222 23588999999999998887
Q ss_pred CCCcceeeeEECCCCEECCCcEEcceEEcCCcEE
Q 015259 367 DFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTL 400 (410)
Q Consensus 367 ~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v 400 (410)
+.||++++|++++++.+.+ .++.++
T Consensus 111 --------v~IG~~~~Igags~V~~dv-~~~~~v 135 (146)
T PRK10191 111 --------ITIGNNVTVGAGSVVLDSV-PDNALV 135 (146)
T ss_pred --------CEECCCCEECCCCEECCcc-CCCcEE
Confidence 8999999999999996654 344443
No 188
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.08 E-value=1.5e-09 Score=98.29 Aligned_cols=91 Identities=18% Similarity=0.186 Sum_probs=58.6
Q ss_pred CCcEEccCeEECCCCEECCCcEECCCcEECCCcE-ECCCCE---Ee-eeEECCCCEECCCCEEE-----e----eEECCC
Q 015259 288 KNATIIGDVYVHPSAKIHPTAKIGPNVSISANAR-IGAGVR---LI-SCIILDGVEIMENAVVT-----N----AIVGWK 353 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~-i~~~~~---i~-~~~i~~~~~i~~~~~i~-----~----~~i~~~ 353 (410)
.+..|.+.++|.+++.|++|++|.++++|+.++. +|.++. |. +++|+++|.||.+|+|. + +.|+++
T Consensus 177 ~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasIg~tLsGg~~~~V~IGe~ 256 (341)
T TIGR03536 177 KGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCSTMGTLSGGGNIVISVGEG 256 (341)
T ss_pred CCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEEeEEEeCCCceeEEECCC
Confidence 4556666666666666666666666666666666 555544 43 57778888888888774 2 455555
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
|.||.++.| + ..||++|+|++|+.|
T Consensus 257 ~lIGagA~I-G----------I~IGd~~iIGAGavV 281 (341)
T TIGR03536 257 CLLGANAGI-G----------IPLGDRCTVEAGLYI 281 (341)
T ss_pred cEECCCCEE-e----------eEECCCCEECCCCEE
Confidence 555555555 2 677777777777766
No 189
>PLN02357 serine acetyltransferase
Probab=99.07 E-value=9.7e-10 Score=102.43 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=54.0
Q ss_pred eEECCCCEECCCcEECC--CcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcce
Q 015259 296 VYVHPSAKIHPTAKIGP--NVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKL 372 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~--~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~ 372 (410)
+.|++++.|+.|+.|.. +++||++++||++|.|. +++||.. +......+++|+++|.||.++.|.++
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~---g~~~g~~~piIGd~V~IGagA~Ilgg------- 296 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGT---GKQSGDRHPKIGDGVLIGAGTCILGN------- 296 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCc---cccCCccCceeCCCeEECCceEEECC-------
Confidence 45555555555555553 45666666666666663 2222221 11112346889999999999988776
Q ss_pred eeeEECCCCEECCCcEEc
Q 015259 373 GITILGEAVGVEDEVVVT 390 (410)
Q Consensus 373 ~~~~i~~~~~i~~~~~v~ 390 (410)
++||+++.||+|++|.
T Consensus 297 --V~IGdga~IGAgSVV~ 312 (360)
T PLN02357 297 --ITIGEGAKIGAGSVVL 312 (360)
T ss_pred --eEECCCCEECCCCEEC
Confidence 8999999999999984
No 190
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.05 E-value=8.6e-10 Score=97.26 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=75.8
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEee-eEECCCCEECCCCEEE---------eeEECCCCEECC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLIS-CIILDGVEIMENAVVT---------NAIVGWKSSIGR 358 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~---------~~~i~~~~~i~~ 358 (410)
++.++..++|++++++.++++|.=++.++++++|+-+++++. ..||+||+||.++.|. .++|++||.||+
T Consensus 114 ~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGA 193 (271)
T COG2171 114 GAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGA 193 (271)
T ss_pred ccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCCCeEECCccEecc
Confidence 566777788888888888888887888999999988888875 4599999999998885 378899999999
Q ss_pred CcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 359 WSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 359 ~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
++.+..+ +.+|++|+|++|+.|
T Consensus 194 ns~~veG---------V~vGdg~VV~aGv~I 215 (271)
T COG2171 194 NSEVVEG---------VIVGDGCVVAAGVFI 215 (271)
T ss_pred ccceEee---------eEeCCCcEEecceEE
Confidence 8855555 888888888888888
No 191
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.05 E-value=3e-09 Score=102.61 Aligned_cols=102 Identities=14% Similarity=0.302 Sum_probs=72.2
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
.+.+|||||| +|+||+. +|+|++++|+|||+|+++.+.. ++|+..... ...+ . .++ +.++
T Consensus 174 ~i~~iILAGG--~SsRmG~-----~K~ll~~~Gk~ll~~~l~~l~~~~~~vvV~~~~~~--~~~~-~----~~~--v~~i 237 (369)
T PRK14490 174 PLSGLVLAGG--RSSRMGS-----DKALLSYHESNQLVHTAALLRPHCQEVFISCRAEQ--AEQY-R----SFG--IPLI 237 (369)
T ss_pred CceEEEEcCC--ccccCCC-----CcEEEEECCccHHHHHHHHHHhhCCEEEEEeCCch--hhHH-h----hcC--CcEE
Confidence 4789999999 9999975 9999999999999999999976 655554332 1111 1 122 3333
Q ss_pred eC-CCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CC-ChHHHHH
Q 015259 84 RE-DKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SF-PLPEMLD 128 (410)
Q Consensus 84 ~~-~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~-~l~~~l~ 128 (410)
.. ....|...++..+.+... .+.++++.||+++ .. .+..+++
T Consensus 238 ~d~~~~~Gpl~gi~~al~~~~---~~~~lv~~~DmP~i~~~~i~~L~~ 282 (369)
T PRK14490 238 TDSYLDIGPLGGLLSAQRHHP---DAAWLVVACDLPFLDEATLQQLVE 282 (369)
T ss_pred eCCCCCCCcHHHHHHHHHhCC---CCcEEEEeCCcCCCCHHHHHHHHH
Confidence 32 335688888888776654 3679999999996 33 2555554
No 192
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.05 E-value=2.4e-09 Score=101.40 Aligned_cols=104 Identities=15% Similarity=0.262 Sum_probs=74.8
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
.+.+|||||| +|+||+. +|+|+++.|+||++|+++.+.. ++|+.+... .... .+ ..+.++
T Consensus 160 ~i~~IILAGG--kSsRMG~-----dKaLL~~~GkpLl~~~ie~l~~~~~~ViVv~~~~~--~~~~------~~-~~v~~I 223 (346)
T PRK14500 160 PLYGLVLTGG--KSRRMGK-----DKALLNYQGQPHAQYLYDLLAKYCEQVFLSARPSQ--WQGT------PL-ENLPTL 223 (346)
T ss_pred CceEEEEecc--ccccCCC-----CcccceeCCccHHHHHHHHHHhhCCEEEEEeCchH--hhhc------cc-cCCeEE
Confidence 5789999999 9999976 9999999999999999999887 666654321 1110 01 023333
Q ss_pred -eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CC-ChHHHHHHH
Q 015259 84 -REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SF-PLPEMLDAH 130 (410)
Q Consensus 84 -~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~-~l~~~l~~~ 130 (410)
......|...+|+.+.+... .+.++++.||+++ .. .+..+++.+
T Consensus 224 ~D~~~~~GPlagI~aaL~~~~---~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 224 PDRGESVGPISGILTALQSYP---GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred eCCCCCCChHHHHHHHHHhCC---CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 23445799999999988764 3578999999995 33 366666654
No 193
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.05 E-value=1.4e-09 Score=80.27 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=47.3
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeE
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITI 376 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~ 376 (410)
+|++++.|++++.|.+++.||++|.|++++.|.+..... .....+|++++.++.++.+..+ +.
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------~~~~~~ig~~~~v~~~~~i~~~---------~~ 64 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPN--------EKNPTIIGDNVEIGANAVIHGG---------VK 64 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCC--------ccCCcEECCCcEECCCCEEeCC---------CE
Confidence 466666666666666567777777777766665443221 1224566677777776766665 67
Q ss_pred ECCCCEECCCcEE
Q 015259 377 LGEAVGVEDEVVV 389 (410)
Q Consensus 377 i~~~~~i~~~~~v 389 (410)
|++++.|++++.+
T Consensus 65 ig~~~~i~~~s~v 77 (78)
T cd00208 65 IGDNAVIGAGAVV 77 (78)
T ss_pred ECCCCEECcCcEe
Confidence 7777777666654
No 194
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.04 E-value=9.5e-10 Score=97.00 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=79.0
Q ss_pred CEECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcceeeeEECC
Q 015259 302 AKIHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGE 379 (410)
Q Consensus 302 ~~i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~ 379 (410)
+.|.|+++++.+++|++|+++-+.+.|. ++.++.++.|.-.+.+. ..+||+||.||.++.|.+--+.+... .++|++
T Consensus 109 ~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn~higgGa~I~GVLep~~a~-Pv~Igd 187 (271)
T COG2171 109 VRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKNSHIGGGASIGGVLEPLQAN-PVIIGD 187 (271)
T ss_pred eeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCCcccCCcceEeEEecCCCCC-CeEECC
Confidence 5666666666677888888888878886 78888888888777777 56899999999999888743333322 278888
Q ss_pred CCEECCCcEE-------cceEEcCCcEEcccCCCc
Q 015259 380 AVGVEDEVVV-------TNSIVLPNKTLNVSVHQE 407 (410)
Q Consensus 380 ~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~ 407 (410)
||.||+++++ .+|+|.+|..|+.+++..
T Consensus 188 ncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~ 222 (271)
T COG2171 188 NCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIY 222 (271)
T ss_pred ccEeccccceEeeeEeCCCcEEecceEEeCCcceE
Confidence 8888888644 688888888888887653
No 195
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.04 E-value=1.3e-09 Score=104.87 Aligned_cols=115 Identities=18% Similarity=0.242 Sum_probs=78.5
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+++.+|||||| .|+||+ ..||+|++++|+|||+|+++.+.. ++|+.....+.+.+++. +..+..
T Consensus 4 ~~i~~VILAgG--~s~Rmg----g~~K~ll~i~Gkpll~~~i~~l~~~~~~iivvv~~~~~~~~~~~~------~~~~i~ 71 (366)
T PRK14489 4 SQIAGVILAGG--LSRRMN----GRDKALILLGGKPLIERVVDRLRPQFARIHLNINRDPARYQDLFP------GLPVYP 71 (366)
T ss_pred CCceEEEEcCC--cccCCC----CCCCceeEECCeeHHHHHHHHHHhhCCEEEEEcCCCHHHHHhhcc------CCcEEe
Confidence 46899999999 999995 248999999999999999999876 66644443333333211 112211
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-C-CChHHHHHHHHhcCCc
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-S-FPLPEMLDAHRNYGGM 136 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~-~~l~~~l~~~~~~~~~ 136 (410)
.......|..++++.+.+.+. .+.+++++||.++ . ..+..+++.+...+++
T Consensus 72 d~~~g~~G~~~si~~gl~~~~---~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~ 124 (366)
T PRK14489 72 DILPGFQGPLSGILAGLEHAD---SEYLFVVACDTPFLPENLVKRLSKALAIEGAD 124 (366)
T ss_pred cCCCCCCChHHHHHHHHHhcC---CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCe
Confidence 111223688899999988774 3679999999874 3 3367777765443333
No 196
>PLN02739 serine acetyltransferase
Probab=99.04 E-value=1.2e-09 Score=101.00 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=57.6
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCE---EEeeEECCCCEECCCcEEccC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAV---VTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~---i~~~~i~~~~~i~~~~~i~~~ 365 (410)
+..|++.+.||+++.|+.+ .+++||++|+||++|.| ..+++||.... -.+.+||++|.||.++.|.++
T Consensus 205 GidI~p~A~IG~Gv~IdHg----~GVVIG~~avIGdnv~I-----~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~ 275 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHG----TGVVIGETAVIGDRVSI-----LHGVTLGGTGKETGDRHPKIGDGALLGACVTILGN 275 (355)
T ss_pred CcccCCCccccCceEEecC----CceEECCCCEECCCCEE-----cCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCC
Confidence 3445555555555555421 24555555555555554 33333332110 125789999999999999887
Q ss_pred CCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEc
Q 015259 366 GDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLN 401 (410)
Q Consensus 366 ~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~ 401 (410)
+.||+++.||+|++|... |.+++++.
T Consensus 276 ---------V~IGd~aiIGAGSVV~kD-VP~~stvv 301 (355)
T PLN02739 276 ---------ISIGAGAMVAAGSLVLKD-VPSHSMVA 301 (355)
T ss_pred ---------eEECCCCEECCCCEECCC-CCCCcEEE
Confidence 999999999999999543 55555554
No 197
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.7e-09 Score=101.09 Aligned_cols=68 Identities=26% Similarity=0.343 Sum_probs=59.4
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccC
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
++.++.+|.|.. .+. +|+|+.+++|+++|.|.+|+|+++|.||++|+|+++||.++|.|++|+.|++.
T Consensus 296 nSLv~~GciI~G--~V~-nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 296 NSLVAGGCIISG--TVE-NSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eeeeeCCeEEEe--EEE-eeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 445555555542 444 89999999999999999999999999999999999999999999999999987
No 198
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.02 E-value=2e-09 Score=106.06 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=72.7
Q ss_pred ccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECC-------------------C
Q 015259 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGW-------------------K 353 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~-------------------~ 353 (410)
...+.+.+.+.+. ++.|. ++.||++|+| +++.|.+|+||++|.|+++|+|.+|+|++ +
T Consensus 290 ~~~~~~~~~a~~~-~~~~~-~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~ 366 (429)
T PRK02862 290 YTRARYLPPSKLL-DATIT-ESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPP 366 (429)
T ss_pred eccCCCCCCcccc-ccEEE-eCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcc
Confidence 3334455555553 66776 6999999999 89999999999999999999999999986 6
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
+.||++|.|.. ++|+++|.||+++.+
T Consensus 367 ~~Ig~~~~i~~----------~ii~~~~~i~~~~~~ 392 (429)
T PRK02862 367 LGIGEGTTIKR----------AIIDKNARIGNNVRI 392 (429)
T ss_pred cEECCCCEEEE----------EEECCCcEECCCcEE
Confidence 99999999988 899999999999999
No 199
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.02 E-value=3.6e-09 Score=95.39 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=58.8
Q ss_pred CcEEccCeEECCCCEECCCcEECCCc-EECCCcEECCCCEEe-eeEECCCCEECCCCEEEe---------eEECCCCEEC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNV-SISANARIGAGVRLI-SCIILDGVEIMENAVVTN---------AIVGWKSSIG 357 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~-~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~---------~~i~~~~~i~ 357 (410)
...+.-++++++++.|.++++|..++ .||++ .| +++|. +|+||++|.|+.++.|.. +.|+++|.||
T Consensus 159 ~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~-iI--~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IG 235 (319)
T TIGR03535 159 ADRVRLGAHLAEGTTVMHEGFVNFNAGTLGAS-MV--EGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLG 235 (319)
T ss_pred CceeeeccEECCCCEEcCCCEEccCceEecCc-eE--EEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEEC
Confidence 34444556666666666666666555 46654 44 35554 567777777777777432 6788888888
Q ss_pred CCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 358 RWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 358 ~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.+|.| + ..||++|+||+|++|
T Consensus 236 agA~I-G----------I~IGd~~VVGAGaVV 256 (319)
T TIGR03535 236 ANSGL-G----------ISLGDDCVVEAGLYV 256 (319)
T ss_pred CCCEE-C----------eEECCCCEECCCCEE
Confidence 88887 3 788888888888888
No 200
>PRK10191 putative acyl transferase; Provisional
Probab=99.01 E-value=3e-09 Score=87.88 Aligned_cols=77 Identities=23% Similarity=0.252 Sum_probs=58.5
Q ss_pred CCcEEccCeEECC--CCEECCCcEECCCcEECCCcEECCCCEE--eeeEECCCCEECCCCEEE-eeEECCCCEECCCcEE
Q 015259 288 KNATIIGDVYVHP--SAKIHPTAKIGPNVSISANARIGAGVRL--ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRV 362 (410)
Q Consensus 288 ~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~i--~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i 362 (410)
.++.+.+++.|++ ++.|+++++|+.++.|+.+|+||+.... ..+.||++|.|+.++.+. ++.|++++.|++++.+
T Consensus 46 ~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Igags~V 125 (146)
T PRK10191 46 AAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVGAGSVV 125 (146)
T ss_pred CCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEECCCCEE
Confidence 3567788888877 5777777777777777777777765443 245788888888888887 6888888888888888
Q ss_pred cc
Q 015259 363 QA 364 (410)
Q Consensus 363 ~~ 364 (410)
.+
T Consensus 126 ~~ 127 (146)
T PRK10191 126 LD 127 (146)
T ss_pred CC
Confidence 76
No 201
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.00 E-value=2.3e-09 Score=106.11 Aligned_cols=86 Identities=16% Similarity=0.161 Sum_probs=46.2
Q ss_pred EECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEc-----------cCC-----
Q 015259 303 KIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQ-----------AEG----- 366 (410)
Q Consensus 303 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-----------~~~----- 366 (410)
.+.+++.|.+.+.||++|.|+++|.|.+|+|+++|.|+. +++.+|+|++++.|++++.|. +..
T Consensus 255 ~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~~~~i~~~~~~~~~ 333 (430)
T PRK14359 255 YIESGVEFEGECELEEGVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGNFVETKNAKLNGVK 333 (430)
T ss_pred EECCCcEEcCceEECCCCEECCCeEEEeeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcCcEEEcccEecccc
Confidence 344444555555566666666666666666666666643 455555555555555555443 210
Q ss_pred -CCCcceeeeEECCCCEECCCcEE
Q 015259 367 -DFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 367 -~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.+...++.|+||++|.||+++++
T Consensus 334 i~~~~~i~d~~Ig~~~~ig~~~~~ 357 (430)
T PRK14359 334 AGHLSYLGDCEIDEGTNIGAGTIT 357 (430)
T ss_pred ccccccccCCEECCCCEECCCceE
Confidence 02233444667777777776544
No 202
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.00 E-value=2.3e-09 Score=97.21 Aligned_cols=76 Identities=25% Similarity=0.173 Sum_probs=49.6
Q ss_pred CCcEEccCeEECCCCEECC--CcEECCCcEECCCcEECCCCEEee---------eEECCCCEECCCCEEE-eeEECCCCE
Q 015259 288 KNATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSS 355 (410)
Q Consensus 288 ~~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~ 355 (410)
.+..|++.+.||+++.|+. +.+|++++.||++|.|..+++|++ .+||++|.||.+|.|. +++||+++.
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~ 219 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAK 219 (273)
T ss_pred eeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCE
Confidence 3667777777777777763 567777777888888877777763 4566666666666554 445555555
Q ss_pred ECCCcEEc
Q 015259 356 IGRWSRVQ 363 (410)
Q Consensus 356 i~~~~~i~ 363 (410)
||+++.+.
T Consensus 220 IGAgSvV~ 227 (273)
T PRK11132 220 IGAGSVVL 227 (273)
T ss_pred ECCCCEEC
Confidence 55555443
No 203
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.99 E-value=3.6e-09 Score=95.80 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=55.1
Q ss_pred cEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCE-Eee-eE---ECCCCEECCCCEEEeeEECCCCEECCCcEEcc
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVR-LIS-CI---ILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~-i~~-~~---i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (410)
.-+..+++|++++.|..++.|+++++|.+++.|+.++. +++ ++ |..++.||++| .|+++|.| ++.+.+
T Consensus 173 yVvp~gVrI~~sa~Vr~gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds-----~IG~gasI--g~tLsG 245 (341)
T TIGR03536 173 YVVPKGVRIADTARVRLGAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGS-----DLGGGCST--MGTLSG 245 (341)
T ss_pred eEccCCcEEcCCCeEcCCcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCC-----EECCCCEE--eEEEeC
Confidence 34455566666666665555555555555555555554 332 22 23333333333 33333333 222222
Q ss_pred CCCCCcceeeeEECCCCEECCCcEE-----cceEEcCCcEEcccCC
Q 015259 365 EGDFNAKLGITILGEAVGVEDEVVV-----TNSIVLPNKTLNVSVH 405 (410)
Q Consensus 365 ~~~~~~~~~~~~i~~~~~i~~~~~v-----~~~~v~~~~~v~~~~~ 405 (410)
+...+ +.||++|.||.|+.+ .+|+|++|++|..+.+
T Consensus 246 g~~~~-----V~IGe~~lIGagA~IGI~IGd~~iIGAGavVtagTk 286 (341)
T TIGR03536 246 GGNIV-----ISVGEGCLLGANAGIGIPLGDRCTVEAGLYITAGTK 286 (341)
T ss_pred CCcee-----EEECCCcEECCCCEEeeEECCCCEECCCCEEeCCcE
Confidence 10011 678888888888877 5788888888877654
No 204
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.97 E-value=5.6e-09 Score=88.55 Aligned_cols=76 Identities=28% Similarity=0.212 Sum_probs=50.8
Q ss_pred CcEEccCeEECCCCEECC--CcEECCCcEECCCcEECCCCEEee---------eEECCCCEECCCCEEE-eeEECCCCEE
Q 015259 289 NATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSI 356 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (410)
+..+.+.+.|++++.|+. ++.|++++.||++|+|+++++|+. ++|+++|.|+.++.|. +++|++++.|
T Consensus 61 ~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~I 140 (162)
T TIGR01172 61 GVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAKI 140 (162)
T ss_pred CeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCEE
Confidence 456666677777777754 366776777777777777777763 3667777777777666 4666666666
Q ss_pred CCCcEEcc
Q 015259 357 GRWSRVQA 364 (410)
Q Consensus 357 ~~~~~i~~ 364 (410)
++++.|..
T Consensus 141 ga~s~V~~ 148 (162)
T TIGR01172 141 GANSVVLK 148 (162)
T ss_pred CCCCEECC
Confidence 66665554
No 205
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=98.97 E-value=4e-09 Score=89.93 Aligned_cols=112 Identities=20% Similarity=0.289 Sum_probs=83.3
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccc-hHHHHHHHHhhcccCCccEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYE-EREFALYVSSISNELRIPVR 81 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~-~~~i~~~~~~~~~~~~~~i~ 81 (410)
.+.+|||||| +|+||+. +|-|+|+.|+|++.++++...+ ++|+..+. .+....... ...++
T Consensus 5 ~v~~VvLAAG--rssRmG~-----~KlLap~~g~plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~------~~~~~ 71 (199)
T COG2068 5 TVAAVVLAAG--RSSRMGQ-----PKLLAPLDGKPLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA------QLGVT 71 (199)
T ss_pred ceEEEEEccc--ccccCCC-----cceecccCCCcHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc------cCCeE
Confidence 6899999999 9999996 9999999999999999997765 66665543 222222221 23455
Q ss_pred Eee-CCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhc
Q 015259 82 YLR-EDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNY 133 (410)
Q Consensus 82 ~i~-~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~ 133 (410)
++. ++...|.+.|+..+........ +.++++.||++. ..++..+++.+..+
T Consensus 72 ~v~npd~~~Gls~Sl~ag~~a~~~~~-~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 72 VVVNPDYAQGLSTSLKAGLRAADAEG-DGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred EEeCcchhhhHhHHHHHHHHhcccCC-CeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 443 3556789999999999886332 478999999984 45688888877655
No 206
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.97 E-value=9.9e-09 Score=80.79 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=64.7
Q ss_pred eEECCCCEECCCcEEC--CCcEECCCcEECCCCEEeeeEECCCCEECCCCEE-EeeEECCCCEECCCcEEccCCCCCcce
Q 015259 296 VYVHPSAKIHPTAKIG--PNVSISANARIGAGVRLISCIILDGVEIMENAVV-TNAIVGWKSSIGRWSRVQAEGDFNAKL 372 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i-~~~~i~~~~~i~~~~~i~~~~~~~~~~ 372 (410)
..||+++.|++++.|. +.+.||++|.|++++.|... ...........+ ...+|+++|+|+.++.|..+
T Consensus 4 i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~--~h~~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g------- 74 (107)
T cd05825 4 LTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTG--SHDYRSPAFPLITAPIVIGDGAWVAAEAFVGPG------- 74 (107)
T ss_pred EEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecC--CCCCCcCccceecCCEEECCCCEECCCCEECCC-------
Confidence 4556666666666664 46778888888888777421 111111112222 36789999999999999887
Q ss_pred eeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 373 GITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 373 ~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
+.||+++.|++++.+.+. +.+++++..
T Consensus 75 --~~Ig~~~~i~~gs~v~~~-~~~~~~~~G 101 (107)
T cd05825 75 --VTIGEGAVVGARSVVVRD-LPAWTVYAG 101 (107)
T ss_pred --CEECCCCEECCCCEEeCc-CCCCCEEEC
Confidence 999999999999999764 567666643
No 207
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.97 E-value=7.9e-09 Score=90.24 Aligned_cols=80 Identities=14% Similarity=0.238 Sum_probs=60.4
Q ss_pred eeEECCCCEECCCCEEE---eeEECCCCEECCCcEEccCCC------------------CCcceeeeEECCCCEECCCcE
Q 015259 330 SCIILDGVEIMENAVVT---NAIVGWKSSIGRWSRVQAEGD------------------FNAKLGITILGEAVGVEDEVV 388 (410)
Q Consensus 330 ~~~i~~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~~------------------~~~~~~~~~i~~~~~i~~~~~ 388 (410)
...||++|.|++++.|. .++||++|.|++++.|.+... .....+.++||++++|++++.
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~v~Ig~~~~ig~~~~ 144 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNHGSFKHSDDFSSPNLPPDMRTLESSAVVIGQRVWIGENVT 144 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCCccccccccccccccChhhcccccCCeEEcCCcEECCCCE
Confidence 46789999999999987 689999999999999976321 011224467777777777776
Q ss_pred E-------cceEEcCCcEEcccCCCccc
Q 015259 389 V-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 389 v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
+ .+|+|+++++|..++++..+
T Consensus 145 i~~g~~Ig~~~~Iga~s~v~~~i~~~~~ 172 (192)
T PRK09677 145 ILPGVSIGNGCIVGANSVVTKSIPENTV 172 (192)
T ss_pred EcCCCEECCCCEECCCCEECcccCCCcE
Confidence 6 67888888888888887654
No 208
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.94 E-value=6.4e-09 Score=90.84 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=34.1
Q ss_pred eEECCCCEECCCcEEccCCCCCc----------ceeeeEECCCCEECCCcEE-------cceEEcCCcEEcccCCCccc
Q 015259 348 AIVGWKSSIGRWSRVQAEGDFNA----------KLGITILGEAVGVEDEVVV-------TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~~~~~~~----------~~~~~~i~~~~~i~~~~~v-------~~~~v~~~~~v~~~~~~~~~ 409 (410)
..||++|.|++++.|.... |+. ....++||++|+||.+++| .+++|++|++|..++++..+
T Consensus 96 I~IGd~v~Ig~~v~I~~~~-h~~~~~~r~~g~~~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v 173 (203)
T PRK09527 96 VTIGDNVLIAPNVTLSVTG-HPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVV 173 (203)
T ss_pred EEECCCCEECCCCEEEeCC-CCCChhhccccccccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcE
Confidence 4566666666666665321 110 0112556666666555555 56677777777777776543
No 209
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.94 E-value=4.9e-09 Score=102.78 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=66.3
Q ss_pred ECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 310 IGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 310 i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
+.+++.||++|.|+ ++.|.+|+||++|.|+++|+|.+|+|+++|.|+++|.|.+ |+|++++.|++++++
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~----------~ii~~~~~i~~~~~i 380 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRR----------AILDKNVVVPPGATI 380 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEe----------eEECCCCEECCCCEE
Confidence 34579999999998 9999999999999999999999999999999999999998 999999999999998
Q ss_pred cc
Q 015259 390 TN 391 (410)
Q Consensus 390 ~~ 391 (410)
.+
T Consensus 381 ~~ 382 (407)
T PRK00844 381 GV 382 (407)
T ss_pred CC
Confidence 54
No 210
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.93 E-value=2.3e-09 Score=90.36 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=56.4
Q ss_pred CcEEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECC---CCEEEeeEECCCCEECCCcEEccC
Q 015259 289 NATIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIME---NAVVTNAIVGWKSSIGRWSRVQAE 365 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~i~~~~~i~~~ 365 (410)
+.+|++.+.||++..|+.+ .+.+||+.+.||++|.| ..++++|. .+--++-+|+++|.||++++|.++
T Consensus 67 gieIhp~A~IG~g~fIdHg----~GvVIgeta~IGddv~I-----~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~ 137 (194)
T COG1045 67 GIEIHPGAKIGRGLFIDHG----TGVVIGETAVIGDDVTI-----YHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGN 137 (194)
T ss_pred ceeeCCCCeECCceEEcCC----ceEEEcceeEECCCeEE-----EcceEecCCCCcCCCCCCccCCCeEECCCCEEEcc
Confidence 4455555555555555443 25667777777776666 33333332 111336799999999999999887
Q ss_pred CCCCcceeeeEECCCCEECCCcEE
Q 015259 366 GDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 366 ~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
-.||+|+.||+|++|
T Consensus 138 ---------I~IGd~akIGA~sVV 152 (194)
T COG1045 138 ---------IEIGDNAKIGAGSVV 152 (194)
T ss_pred ---------eEECCCCEECCCceE
Confidence 899999999999999
No 211
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=8e-09 Score=99.00 Aligned_cols=89 Identities=30% Similarity=0.384 Sum_probs=73.9
Q ss_pred ECCCcEECCCcEECCCcEECCCCEEe-eeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCE
Q 015259 304 IHPTAKIGPNVSISANARIGAGVRLI-SCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVG 382 (410)
Q Consensus 304 i~~~~~i~~~~~ig~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~ 382 (410)
+.. +.|.++++||++|.|++++.|+ +++||+||.|++++.|.+|+|+++|.|++++.|.+ |+||++|.
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~----------sIi~~~~~ 321 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGD----------SIIGENCK 321 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEee----------eEEcCCcE
Confidence 444 6677788888888888888887 58889999999999999999999999999999999 99999999
Q ss_pred ECCC-----cEE-cceEEcCCcEEccc
Q 015259 383 VEDE-----VVV-TNSIVLPNKTLNVS 403 (410)
Q Consensus 383 i~~~-----~~v-~~~~v~~~~~v~~~ 403 (410)
||++ +.+ .++.+.+|.+++.+
T Consensus 322 ig~~~~i~d~~~g~~~~i~~g~~~~~~ 348 (358)
T COG1208 322 IGASLIIGDVVIGINSEILPGVVVGPG 348 (358)
T ss_pred ECCceeecceEecCceEEcCceEeCCC
Confidence 9961 333 46667777777654
No 212
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.91 E-value=4.2e-09 Score=103.70 Aligned_cols=67 Identities=15% Similarity=0.290 Sum_probs=64.2
Q ss_pred CcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc
Q 015259 313 NVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
+++||++|+| ++|.|.+|+|+++|.|+++|.|.+|+|+++|.|+++|+|.+ |+|+++|.|++++.+.
T Consensus 327 ~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~----------~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 327 NSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRR----------CVIDRGCVIPEGMVIG 393 (425)
T ss_pred eCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEee----------EEECCCCEECCCCEEC
Confidence 8999999999 79999999999999999999999999999999999999987 9999999999998884
No 213
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.90 E-value=1.1e-08 Score=101.08 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=67.2
Q ss_pred CCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECC----------------C---CEECCCc
Q 015259 300 PSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGW----------------K---SSIGRWS 360 (410)
Q Consensus 300 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~----------------~---~~i~~~~ 360 (410)
+.+.+ .++.|.+ ++|+++|+|+ +|.|.+|+|+++|.|+++|+|.+|+++. + +.|+++|
T Consensus 304 ~~~~~-~~~~i~~-s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~ 380 (436)
T PLN02241 304 PPSKI-EDCRITD-SIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENT 380 (436)
T ss_pred CCcEe-cCCeEEE-eEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCC
Confidence 44555 4677764 9999999999 9999999999999999999999998866 3 3899999
Q ss_pred EEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 361 RVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 361 ~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
.|.+ ++|+++++||+++++
T Consensus 381 ~i~~----------~vI~~~v~Ig~~~~i 399 (436)
T PLN02241 381 KIRN----------AIIDKNARIGKNVVI 399 (436)
T ss_pred EEcc----------eEecCCCEECCCcEE
Confidence 9987 899999999999998
No 214
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.89 E-value=1.3e-08 Score=91.87 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=57.9
Q ss_pred cCeEECCCCEECCCcEECCCcEECCCcEECCCC-EEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEcc----CCCC
Q 015259 294 GDVYVHPSAKIHPTAKIGPNVSISANARIGAGV-RLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA----EGDF 368 (410)
Q Consensus 294 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~-~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~----~~~~ 368 (410)
.+++|...+.|.-|+.|+++++|.+++.|..++ +|+++.| ++.|++ +|+|++++.|+.++.|.+ +...
T Consensus 152 ~gVRI~~~~rVRlGAyLGeGtvVm~~a~VN~nAgtIG~~iI--~g~I~H-----dvvIGd~~~IgpGvsI~G~LsGg~~~ 224 (319)
T TIGR03535 152 TGVRIGDADRVRLGAHLAEGTTVMHEGFVNFNAGTLGASMV--EGRISA-----GVVVGDGSDIGGGASIMGTLSGGGKE 224 (319)
T ss_pred CccEECCCceeeeccEECCCCEEcCCCEEccCceEecCceE--EEEEcc-----CCEECCCCEECCCceecceecCCCcc
Confidence 345555555555555555555555555555555 3443332 233333 345666666666666443 1101
Q ss_pred CcceeeeEECCCCEECCCcEE-----cceEEcCCcEEcccCCC
Q 015259 369 NAKLGITILGEAVGVEDEVVV-----TNSIVLPNKTLNVSVHQ 406 (410)
Q Consensus 369 ~~~~~~~~i~~~~~i~~~~~v-----~~~~v~~~~~v~~~~~~ 406 (410)
| +.||++|+||.|+.| .+|+|++|++|....+-
T Consensus 225 p-----V~IGe~~~IGagA~IGI~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 225 V-----ISIGERCLLGANSGLGISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred c-----EEECCCcEECCCCEECeEECCCCEECCCCEEeCCeEE
Confidence 1 577777777777777 68888888888876653
No 215
>PLN02357 serine acetyltransferase
Probab=98.88 E-value=1.4e-08 Score=94.82 Aligned_cols=76 Identities=24% Similarity=0.180 Sum_probs=65.8
Q ss_pred CcEEccCeEECCCCEECC--CcEECCCcEECCCcEECCCCEEee---------eEECCCCEECCCCEEE-eeEECCCCEE
Q 015259 289 NATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSI 356 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (410)
+..|++.+.||+++.|.. +++|+++++||++|.|+.+++|++ ++||++|.||.++.|. +++||+++.|
T Consensus 226 ~vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~I 305 (360)
T PLN02357 226 AVDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKI 305 (360)
T ss_pred ceeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEE
Confidence 567888888998888885 678888899999999998888864 7899999999998886 8899999999
Q ss_pred CCCcEEcc
Q 015259 357 GRWSRVQA 364 (410)
Q Consensus 357 ~~~~~i~~ 364 (410)
|.++.|..
T Consensus 306 GAgSVV~~ 313 (360)
T PLN02357 306 GAGSVVLK 313 (360)
T ss_pred CCCCEECc
Confidence 99998887
No 216
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.88 E-value=4.1e-09 Score=83.08 Aligned_cols=101 Identities=20% Similarity=0.250 Sum_probs=83.7
Q ss_pred eEECCCCEECCCcEEC---CCcEECCCcEECCCCEEe-------------eeEECCCCEECCCCEEEeeEECCCCEECCC
Q 015259 296 VYVHPSAKIHPTAKIG---PNVSISANARIGAGVRLI-------------SCIILDGVEIMENAVVTNAIVGWKSSIGRW 359 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~-------------~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~ 359 (410)
..+.-.+.|.+|+.|+ .++.+|..|+++.++.|. +.-||+++.|+++|++.-+.|+..+.+|.+
T Consensus 34 I~lnGKtIv~~g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gkn 113 (184)
T KOG3121|consen 34 ILLNGKTIVEEGVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKN 113 (184)
T ss_pred EEEcCcEEEeeCcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccc
Confidence 3444455666777777 368889999998888886 366999999999999999999999999999
Q ss_pred cEEccCCCCCcceeeeEECCCCEECCCcEE-cceEEcCCcEEcccCC
Q 015259 360 SRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNSIVLPNKTLNVSVH 405 (410)
Q Consensus 360 ~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~ 405 (410)
+.|+.+ |+|.|.|.|.+++++ +.+++.|.++++.+-.
T Consensus 114 aviGrr---------CVlkdCc~ild~tVlPpet~vppy~~~~g~p~ 151 (184)
T KOG3121|consen 114 AVIGRR---------CVLKDCCRILDDTVLPPETLVPPYSTIGGNPA 151 (184)
T ss_pred eeEcCc---------eEhhhheeccCCcccCcccccCCceEEcCCCc
Confidence 999998 999999999999999 5777888888876544
No 217
>PLN02694 serine O-acetyltransferase
Probab=98.86 E-value=9.6e-09 Score=93.23 Aligned_cols=76 Identities=26% Similarity=0.168 Sum_probs=61.4
Q ss_pred CcEEccCeEECCCCEECC--CcEECCCcEECCCcEECCCCEEee---------eEECCCCEECCCCEEE-eeEECCCCEE
Q 015259 289 NATIIGDVYVHPSAKIHP--TAKIGPNVSISANARIGAGVRLIS---------CIILDGVEIMENAVVT-NAIVGWKSSI 356 (410)
Q Consensus 289 ~~~i~~~~~i~~~~~i~~--~~~i~~~~~ig~~~~i~~~~~i~~---------~~i~~~~~i~~~~~i~-~~~i~~~~~i 356 (410)
+..|++.+.||+++.|.. +++|++++.||++|+|..++++++ ++||++|.||.++.|. +++||+++.|
T Consensus 160 gvdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~I 239 (294)
T PLN02694 160 AVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKI 239 (294)
T ss_pred eEEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEE
Confidence 567888888888888876 788888899999999998888863 6788888888888774 7777777777
Q ss_pred CCCcEEcc
Q 015259 357 GRWSRVQA 364 (410)
Q Consensus 357 ~~~~~i~~ 364 (410)
|+++.+..
T Consensus 240 GAgSVV~k 247 (294)
T PLN02694 240 GAGSVVLI 247 (294)
T ss_pred CCCCEECC
Confidence 77776665
No 218
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.84 E-value=1.9e-08 Score=96.95 Aligned_cols=91 Identities=20% Similarity=0.084 Sum_probs=57.5
Q ss_pred ccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcce
Q 015259 293 IGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKL 372 (410)
Q Consensus 293 ~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~ 372 (410)
.+.+.+.+.+.|+++|.| +++.|+..|.||++|.|++++|+++|.|+++|+|.+|.| .++.|+++++|.++
T Consensus 246 ~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i-~~s~i~~~~~i~~~------- 316 (353)
T TIGR01208 246 DDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEV-EHSIVLDESVIEGV------- 316 (353)
T ss_pred CCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEE-EeeEEcCCCEEcCC-------
Confidence 344566666666777777 466666667777777777777777777777777776666 36777777766553
Q ss_pred eee-EECCCCEECCCcEE-cceEEc
Q 015259 373 GIT-ILGEAVGVEDEVVV-TNSIVL 395 (410)
Q Consensus 373 ~~~-~i~~~~~i~~~~~v-~~~~v~ 395 (410)
. .+ +++.|+.++.+ +++.+.
T Consensus 317 --~~~~-~~~ii~~~~~i~~~~~~~ 338 (353)
T TIGR01208 317 --QARI-VDSVIGKKVRIKGNRRRP 338 (353)
T ss_pred --ccee-ecCEEcCCCEECCCcccc
Confidence 2 33 45666666666 233443
No 219
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.84 E-value=3.7e-08 Score=76.65 Aligned_cols=32 Identities=31% Similarity=0.259 Sum_probs=14.2
Q ss_pred EECCCCEECCCCEEE-eeEECCCCEECCCcEEc
Q 015259 332 IILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQ 363 (410)
Q Consensus 332 ~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 363 (410)
+|+++|.|+.++.+. .+.|++++.|++++.|.
T Consensus 56 ~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 56 TIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred EECCCcEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 344444444444444 24444444444444443
No 220
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.84 E-value=1.6e-08 Score=97.72 Aligned_cols=67 Identities=24% Similarity=0.342 Sum_probs=55.7
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEcc
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (410)
+.|+++|.|+++ .+. +++||++|+|+++|.|.+|+|++++.|+++|+|.+|+|++++.|+.++.|++
T Consensus 295 ~~ig~~~~I~~~-~v~-~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 295 SLVSEGCIISGA-TVS-HSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred CEECCCCEECCC-EEE-ccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 444444444433 333 8999999999999999999999999999999999999999999999988863
No 221
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.83 E-value=3.5e-08 Score=77.66 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=51.5
Q ss_pred CcEECCCcEECCCCEEe---eeEECCCCEECCCCEEEee----EECCCCEECCCcEEccCCCCCcceeeeEECCCCEECC
Q 015259 313 NVSISANARIGAGVRLI---SCIILDGVEIMENAVVTNA----IVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVED 385 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~----~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~ 385 (410)
+..||++|.|++++.|. ...||++|.|++++.|... ...+...+...+.|+.+ +.|+.++.|..
T Consensus 3 ~i~iG~~~~I~~~~~i~~~~~i~IG~~~~I~~~~~I~~~~h~~~~~~~~~~~~~v~Ig~~---------~~ig~~~~i~~ 73 (107)
T cd05825 3 NLTIGDNSWIGEGVWIYNLAPVTIGSDACISQGAYLCTGSHDYRSPAFPLITAPIVIGDG---------AWVAAEAFVGP 73 (107)
T ss_pred eEEECCCCEECCCCEEeeCCceEECCCCEECCCeEeecCCCCCCcCccceecCCEEECCC---------CEECCCCEECC
Confidence 34556666666666664 3567777777777776421 11112223334444444 55555555666
Q ss_pred CcEE-cceEEcCCcEEcccCCCccc
Q 015259 386 EVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 386 ~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
+++| .+|+|++++.|.+++++..+
T Consensus 74 g~~Ig~~~~i~~gs~v~~~~~~~~~ 98 (107)
T cd05825 74 GVTIGEGAVVGARSVVVRDLPAWTV 98 (107)
T ss_pred CCEECCCCEECCCCEEeCcCCCCCE
Confidence 6666 57788888888888776543
No 222
>PLN02739 serine acetyltransferase
Probab=98.80 E-value=3.8e-08 Score=91.13 Aligned_cols=77 Identities=23% Similarity=0.166 Sum_probs=52.0
Q ss_pred CCcEEccCeEEC--CCCEECCCcEECCCcEECCCcEECCCCEE---eeeEECCCCEECCCCEEE-eeEECCCCEECCCcE
Q 015259 288 KNATIIGDVYVH--PSAKIHPTAKIGPNVSISANARIGAGVRL---ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSR 361 (410)
Q Consensus 288 ~~~~i~~~~~i~--~~~~i~~~~~i~~~~~ig~~~~i~~~~~i---~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~ 361 (410)
..+.|+.+++|+ .++.|+++|+|+.++.|..+|+||....- .+.+||++|.||.++.|. ++.||+++.||+++.
T Consensus 210 p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiIGAGSV 289 (355)
T PLN02739 210 PAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMVAAGSL 289 (355)
T ss_pred CCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEECCCCE
Confidence 466777777774 47777777666666666666666532111 136678888888888776 677777777777776
Q ss_pred Ecc
Q 015259 362 VQA 364 (410)
Q Consensus 362 i~~ 364 (410)
|..
T Consensus 290 V~k 292 (355)
T PLN02739 290 VLK 292 (355)
T ss_pred ECC
Confidence 655
No 223
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.78 E-value=2.5e-09 Score=97.89 Aligned_cols=151 Identities=16% Similarity=0.103 Sum_probs=97.9
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccC---CccchhhhHhhccc-------------EEEecccchHHHHHHHHhhc
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR-------------IYLVGFYEEREFALYVSSIS 73 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~---g~pli~~~l~~l~~-------------i~vv~~~~~~~i~~~~~~~~ 73 (410)
.+|+|||| .|+||+ .+.||+|+|++ |+|++++.++.+.. +++...+..+.+.+++++..
T Consensus 2 a~viLaGG--~GtRLg---~~~PK~~~~i~~~~gk~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~ 76 (266)
T cd04180 2 AVVLLAGG--LGTRLG---KDGPKSSTDVGLPSGQCFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN 76 (266)
T ss_pred EEEEECCC--CccccC---CCCCceeeeecCCCCCcHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC
Confidence 57999999 999996 58999999999 99999999999853 44445566678889998753
Q ss_pred ccCCccEEEeeC-CCCCCcHHHHHHhHHHhcccC-CCcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCc-----
Q 015259 74 NELRIPVRYLRE-DKPHGSAGALYNFRDLIMEDN-PSHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSA----- 146 (410)
Q Consensus 74 ~~~~~~i~~i~~-~~~~g~~~~l~~~~~~l~~~~-~~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~----- 146 (410)
... ..+.+..| ..+..+.++... +.... .+....-+||++.......+++.|++++.....+ ...+.
T Consensus 77 ~~~-~~v~~f~Q~~~P~~~~~~~~~----~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v-~~vDN~la~v 150 (266)
T cd04180 77 QKN-SYVITFMQGKLPLKNDDDARD----PHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHF-IGVDNLLVKV 150 (266)
T ss_pred CCC-CceEEEEeCCceEEeCCCCcc----cCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEE-EccCccCccc
Confidence 111 23433333 334444444331 21111 1345566788887666778888888877663332 22221
Q ss_pred ccccccceEEEcCCCCcEEEEecCCC
Q 015259 147 ESASQFGELVADPDTNELLHYTEKPE 172 (410)
Q Consensus 147 ~~~~~~~~v~~d~~~~~v~~i~ekp~ 172 (410)
.++..+|++..+ +.+.+..+.+|+.
T Consensus 151 ~DP~~lG~~~~~-~~~~~~kvv~K~~ 175 (266)
T cd04180 151 ADPLFIGIAIQN-RKAINQKVVPKTR 175 (266)
T ss_pred cCHHHHHHHHHc-CCCEEEEEEECCC
Confidence 355567766655 4567777777754
No 224
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.77 E-value=3.3e-08 Score=95.86 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=60.2
Q ss_pred CCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCC
Q 015259 318 ANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPN 397 (410)
Q Consensus 318 ~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~ 397 (410)
+.+.|++++.|.+|+||++|+|+ +.|.+|+|+++|.|+++|+|.+ |+|++++.|++++.+.+|+|+.+
T Consensus 277 ~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~----------sii~~~~~I~~~~~i~~~ii~~~ 344 (369)
T TIGR02092 277 PPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALIKN----------CIIMQRTVIGEGAHLENVIIDKD 344 (369)
T ss_pred CCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEe----------eEEeCCCEECCCCEEEEEEECCC
Confidence 45555566666778888888886 4688889999999999998887 88999999999888888888888
Q ss_pred cEEcccC
Q 015259 398 KTLNVSV 404 (410)
Q Consensus 398 ~~v~~~~ 404 (410)
++|+++.
T Consensus 345 ~~v~~~~ 351 (369)
T TIGR02092 345 VVIEPNV 351 (369)
T ss_pred CEECCCC
Confidence 8887643
No 225
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.77 E-value=6.3e-08 Score=82.88 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=49.1
Q ss_pred CcEECCCcEECCCCEEe---eeEECCCCEECCCCEEEeeE-------ECCCCEECCCcEEccCCCCCcceeeeEECCCCE
Q 015259 313 NVSISANARIGAGVRLI---SCIILDGVEIMENAVVTNAI-------VGWKSSIGRWSRVQAEGDFNAKLGITILGEAVG 382 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~~~~-------i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~ 382 (410)
++.||+++.|+.++.|. +..||++|.|+++|.|.... ...+..++..+.|+.+ +.||.++.
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~---------~~Ig~~a~ 132 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDN---------VWIGGGVI 132 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCC---------EEECCCCE
Confidence 34444444444444442 34566666666666664210 0022233444455554 56666666
Q ss_pred ECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 383 VEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 383 i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
|.++++| .+|+|+++++|..++++..+
T Consensus 133 I~~gv~Ig~~~~VgagavV~~~vp~~~v 160 (169)
T cd03357 133 ILPGVTIGDNSVIGAGSVVTKDIPANVV 160 (169)
T ss_pred EeCCCEECCCCEECCCCEEccccCCCcE
Confidence 6666666 57778888888888887654
No 226
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.76 E-value=7.3e-08 Score=70.88 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=19.4
Q ss_pred EECCCcEECCCCEEee-eEECCCCEECCCCEEEeeE
Q 015259 315 SISANARIGAGVRLIS-CIILDGVEIMENAVVTNAI 349 (410)
Q Consensus 315 ~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~ 349 (410)
.||+++.|++++.|.+ ++|+++|.|++++.|.+..
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ 37 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAAT 37 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEecc
Confidence 3445555555555543 5566666666666666443
No 227
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.75 E-value=7.9e-08 Score=82.91 Aligned_cols=93 Identities=12% Similarity=0.134 Sum_probs=53.5
Q ss_pred CCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEee-------EECCCCEECCCcEEccCCCCCcceeeeEE
Q 015259 305 HPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNA-------IVGWKSSIGRWSRVQAEGDFNAKLGITIL 377 (410)
Q Consensus 305 ~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~-------~i~~~~~i~~~~~i~~~~~~~~~~~~~~i 377 (410)
+.++.|+.+++|+.+|+|++.+.| .||++|.|+.+|.|... ....+..++..+.|+.+ +.|
T Consensus 71 g~~i~iG~~~~in~~~~i~d~~~I---~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~---------v~I 138 (183)
T PRK10092 71 GYNIFLGNNFYANFDCVMLDVCPI---RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNN---------VWI 138 (183)
T ss_pred cCCcEEcCCcEECCceEEecCceE---EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCC---------cEE
Confidence 333444444444444444444332 67777778777777521 01112333444455554 566
Q ss_pred CCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 378 GEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 378 ~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
|.+|.|.++++| .+|+|++|++|..++++..+
T Consensus 139 G~~a~I~~gv~IG~~~vIgagsvV~~di~~~~i 171 (183)
T PRK10092 139 GGRAVINPGVTIGDNVVVASGAVVTKDVPDNVV 171 (183)
T ss_pred CCCCEECCCCEECCCCEECCCCEEccccCCCcE
Confidence 666666666666 57788899999988887654
No 228
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.75 E-value=7.1e-08 Score=76.12 Aligned_cols=16 Identities=31% Similarity=0.183 Sum_probs=7.6
Q ss_pred eEECCCCEECCCCEEE
Q 015259 331 CIILDGVEIMENAVVT 346 (410)
Q Consensus 331 ~~i~~~~~i~~~~~i~ 346 (410)
+.||++|.|+++|+|.
T Consensus 22 v~IG~~~~Ig~~~~i~ 37 (109)
T cd04647 22 ITIGDNVLIGPNVTIY 37 (109)
T ss_pred eEECCCCEECCCCEEE
Confidence 3444444444444444
No 229
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.73 E-value=3.1e-07 Score=86.37 Aligned_cols=158 Identities=18% Similarity=0.341 Sum_probs=102.5
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccC---CccchhhhHhhccc----------------EEEecc-cchHHHH
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR----------------IYLVGF-YEEREFA 66 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~---g~pli~~~l~~l~~----------------i~vv~~-~~~~~i~ 66 (410)
.++.+|||||| .|+|| +...||+|+|++ |+|++++.++.+.. +++.++ +..+.+.
T Consensus 14 ~~va~viLaGG--~GTRL---g~~~PK~l~pv~~~~~k~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~ 88 (323)
T cd04193 14 GKVAVLLLAGG--QGTRL---GFDGPKGMFPVGLPSKKSLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETR 88 (323)
T ss_pred CCEEEEEECCC--ccccc---CCCCCeEEEEecCCCCCcHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHH
Confidence 37899999999 99999 558899999998 79999999998764 345555 6667888
Q ss_pred HHHHhhcccCCc---cEEEeeC---------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCc
Q 015259 67 LYVSSISNELRI---PVRYLRE---------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDV 117 (410)
Q Consensus 67 ~~~~~~~~~~~~---~i~~i~~---------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~ 117 (410)
+++++. ..||. .+.+..| ..+.|.++-... .++.+.+..-+++.+...|.
T Consensus 89 ~~~~~~-~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN 167 (323)
T cd04193 89 KFFKEN-NYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDN 167 (323)
T ss_pred HHHHhC-CcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCc
Confidence 999873 44555 4444322 125577664443 23444444467889999998
Q ss_pred cc-CCChHHHHHHHHhcCCceEEEEEecCcccccccceEEE-cCCCCcEEEEecCCC
Q 015259 118 CC-SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVA-DPDTNELLHYTEKPE 172 (410)
Q Consensus 118 i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~-d~~~~~v~~i~ekp~ 172 (410)
+. ..--..+|-.+..+++++.+-+.+... ....-|.+.. | ..-.++.+.+-|.
T Consensus 168 ~L~~~~Dp~~lG~~~~~~~~~~~kvv~k~~-~~ekvG~l~~~~-g~~~vvEysel~~ 222 (323)
T cd04193 168 ILVKVADPVFIGFCISKGADVGAKVVRKRY-PTEKVGVVVLVD-GKPQVVEYSEISD 222 (323)
T ss_pred ccccccCHHHhHHHHHcCCceEEEEEECCC-CCCceeEEEEEC-CeEEEEEeecCCH
Confidence 63 333345666777778887775554311 1223454443 3 2335666666543
No 230
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=98.72 E-value=7.8e-08 Score=87.00 Aligned_cols=110 Identities=24% Similarity=0.320 Sum_probs=71.3
Q ss_pred EEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch--HHHHHHHHhhcccCCccEEE
Q 015259 11 AVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE--REFALYVSSISNELRIPVRY 82 (410)
Q Consensus 11 aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~--~~i~~~~~~~~~~~~~~i~~ 82 (410)
||||||| .++|| + +|.|++++|+|||+|+++.+.. ++|++.... +.+.+++.. .+ +.+
T Consensus 2 aiIlA~G--~S~R~-~-----~K~ll~l~Gkpli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~----~~--v~~ 67 (233)
T cd02518 2 AIIQARM--GSTRL-P-----GKVLKPLGGKPLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK----LG--VKV 67 (233)
T ss_pred EEEeeCC--CCCCC-C-----CCcccccCCccHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH----cC--CeE
Confidence 7999999 99999 3 4999999999999999999864 667766543 445555432 22 333
Q ss_pred eeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCceE
Q 015259 83 LREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGMGT 138 (410)
Q Consensus 83 i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~~~ 138 (410)
+.... .+.......+.+.. ..+.++++.||.++ ...+..+++.+...+.+++
T Consensus 68 v~~~~-~~~l~~~~~~~~~~---~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 68 FRGSE-EDVLGRYYQAAEEY---NADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred EECCc-hhHHHHHHHHHHHc---CCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 33222 12222222222212 24679999999996 3458899888765544433
No 231
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=4.1e-08 Score=87.44 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=55.1
Q ss_pred CcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCC
Q 015259 307 TAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDE 386 (410)
Q Consensus 307 ~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~ 386 (410)
++.|++.+.+.+.++||+|+. ||.++.||++++|..|||-++|.|.+|+.+.+ |+||+++.||.+
T Consensus 288 dVyIhPsakvhptAkiGPNVS-----Iga~vrvg~GvRl~~sIIl~d~ei~enavVl~----------sIigw~s~iGrW 352 (407)
T KOG1460|consen 288 DVYIHPSAKVHPTAKIGPNVS-----IGANVRVGPGVRLRESIILDDAEIEENAVVLH----------SIIGWKSSIGRW 352 (407)
T ss_pred eeEEcCcceeCCccccCCCce-----ecCCceecCCceeeeeeeccCcEeeccceEEe----------eeecccccccce
Confidence 344444444444444444444 48889999999999999999999999999999 999999999988
Q ss_pred cEEcc
Q 015259 387 VVVTN 391 (410)
Q Consensus 387 ~~v~~ 391 (410)
+.+++
T Consensus 353 aRVe~ 357 (407)
T KOG1460|consen 353 ARVEG 357 (407)
T ss_pred eeecc
Confidence 88843
No 232
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.68 E-value=1.5e-07 Score=78.00 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=39.2
Q ss_pred EEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceEEcCCcEEcc
Q 015259 345 VTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSIVLPNKTLNV 402 (410)
Q Consensus 345 i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~ 402 (410)
..+++|+++|+||.++.|..+ +.||++++|+++++|.+. +.+++++..
T Consensus 71 ~~~~~Ig~~~~Ig~~~~i~~g---------v~Ig~~~vIgags~V~~~-v~~~~v~~G 118 (145)
T cd03349 71 KGDVIIGNDVWIGHGATILPG---------VTIGDGAVIAAGAVVTKD-VPPYAIVGG 118 (145)
T ss_pred cCCcEECCCCEECCCCEEeCC---------CEECCCCEECCCCEEccc-cCCCeEEEe
Confidence 347899999999999999887 899999999999999654 566666643
No 233
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.63 E-value=9.5e-07 Score=75.57 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=106.6
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEE
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRY 82 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~ 82 (410)
+..|||+|-| .+.|... |-+.+++|+|||.|+++.+.+ -+|+....++.++.. ..+|.++-+
T Consensus 3 ~~iAiIpAR~--gSKgI~~------KNi~~~~gkpLi~~~I~aA~ns~~fd~VviSsDs~~Il~~A-----~~ygak~~~ 69 (228)
T COG1083 3 KNIAIIPARG--GSKGIKN------KNIRKFGGKPLIGYTIEAALNSKLFDKVVISSDSEEILEEA-----KKYGAKVFL 69 (228)
T ss_pred ceEEEEeccC--CCCcCCc------cchHHhCCcchHHHHHHHHhcCCccceEEEcCCcHHHHHHH-----HHhCccccc
Confidence 6789999999 7777755 999999999999999999988 444554444444443 345665544
Q ss_pred eeCCC----CCCcHHHHHHhHHHhcccCCCcEEEEcCCcc--cCCChHHHHHHHHhcCCceEEEEEecCcccccccceEE
Q 015259 83 LREDK----PHGSAGALYNFRDLIMEDNPSHIFLLNCDVC--CSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELV 156 (410)
Q Consensus 83 i~~~~----~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i--~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 156 (410)
.++.+ ...+..++..+.+.++.. .+.++++.+-.+ ...++++..+.+.+...+..+.+.+. + ...|....
T Consensus 70 ~Rp~~LA~D~ast~~~~lh~le~~~~~-~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~--e-~~p~k~f~ 145 (228)
T COG1083 70 KRPKELASDRASTIDAALHALESFNID-EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVEC--E-HHPYKAFS 145 (228)
T ss_pred cCChhhccCchhHHHHHHHHHHHhccc-cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeec--c-cchHHHHH
Confidence 43321 223335566666666532 344777887766 45679999999988877766666554 2 22233223
Q ss_pred EcCCCCcEEEEecCCC-------CccccceeeeEEEEcHHHHH
Q 015259 157 ADPDTNELLHYTEKPE-------TFVSDLINCGVYVFTPDIFN 192 (410)
Q Consensus 157 ~d~~~~~v~~i~ekp~-------~~~~~l~~~Giy~~~~~~~~ 192 (410)
.+ ++.+..+.+.++ -+.....+..+|+++.+.|-
T Consensus 146 ~~--~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~ 186 (228)
T COG1083 146 LN--NGEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALL 186 (228)
T ss_pred hc--CCceeecccCCccccccccchhhhhhcCcEEEehHHHHh
Confidence 22 466777776652 12333446778998888763
No 234
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.61 E-value=3.5e-07 Score=77.36 Aligned_cols=78 Identities=27% Similarity=0.252 Sum_probs=45.4
Q ss_pred CCCcEEccCeEECC--CCEECCCcEECCCcEECCCcEECCCCEE---eeeEECCCCEECCCCEEE-eeEECCCCEECCCc
Q 015259 287 TKNATIIGDVYVHP--SAKIHPTAKIGPNVSISANARIGAGVRL---ISCIILDGVEIMENAVVT-NAIVGWKSSIGRWS 360 (410)
Q Consensus 287 ~~~~~i~~~~~i~~--~~~i~~~~~i~~~~~ig~~~~i~~~~~i---~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~ 360 (410)
..+++|++..+|.= +.+|++.|.|+.++.|-.+++||-...= .+-.||+|++||.++.|- +..||+|+.||++|
T Consensus 71 hp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~akIGA~s 150 (194)
T COG1045 71 HPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGS 150 (194)
T ss_pred CCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCCCEECCCc
Confidence 44666776666533 3344443333333333333333321111 135678888888888776 77888888888888
Q ss_pred EEcc
Q 015259 361 RVQA 364 (410)
Q Consensus 361 ~i~~ 364 (410)
.+..
T Consensus 151 VVlk 154 (194)
T COG1045 151 VVLK 154 (194)
T ss_pred eEcc
Confidence 7766
No 235
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.50 E-value=1.5e-07 Score=85.28 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=62.1
Q ss_pred cEECCCcEECCCCEEee-eEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cc
Q 015259 314 VSISANARIGAGVRLIS-CIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TN 391 (410)
Q Consensus 314 ~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~ 391 (410)
..+.+-..+|++|.|++ ++||.+|.|++++.|.+|++..++.++.++.|.. +++|.++.||-|+++ ++
T Consensus 265 vlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s----------~ivg~~~~IG~~~~id~~ 334 (371)
T KOG1322|consen 265 VLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISS----------SIVGWNVPIGIWARIDKN 334 (371)
T ss_pred EeeccccccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHh----------hhccccccccCceEEecc
Confidence 33333333344444442 5569999999999999999999999999999998 899999999999999 57
Q ss_pred eEEcCCcEEcc
Q 015259 392 SIVLPNKTLNV 402 (410)
Q Consensus 392 ~~v~~~~~v~~ 402 (410)
|++|...+|..
T Consensus 335 a~lG~nV~V~d 345 (371)
T KOG1322|consen 335 AVLGKNVIVAD 345 (371)
T ss_pred cEeccceEEec
Confidence 78888877754
No 236
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.50 E-value=8.4e-07 Score=73.61 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=22.2
Q ss_pred eEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||.++.|.++++| .+|+|+++++|..++++..+
T Consensus 80 ~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v 115 (145)
T cd03349 80 VWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAI 115 (145)
T ss_pred CEECCCCEEeCCCEECCCCEECCCCEEccccCCCeE
Confidence 444444555555555 57777788888888777643
No 237
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.49 E-value=3e-05 Score=75.73 Aligned_cols=181 Identities=15% Similarity=0.195 Sum_probs=113.9
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCcccccc-CCccchhhhHhhccc----------EEEecc-cchHHHHHHHHhhcc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL-GGQPMVHHPISACKR----------IYLVGF-YEEREFALYVSSISN 74 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi-~g~pli~~~l~~l~~----------i~vv~~-~~~~~i~~~~~~~~~ 74 (410)
.++.+|.|||| .||||+- ..||.++++ .|+++++..++.+.. .++-++ ..++...+++++..
T Consensus 78 ~k~avlkLnGG--lGTrmG~---~~PKs~i~v~~~~sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~- 151 (469)
T PLN02474 78 DKLVVLKLNGG--LGTTMGC---TGPKSVIEVRNGLTFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYT- 151 (469)
T ss_pred hcEEEEEecCC--cccccCC---CCCceeEEcCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcC-
Confidence 46889999999 9999997 889999999 457998888887765 344444 34556777777632
Q ss_pred cCCccEEEeeC------------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCcccCCChHH
Q 015259 75 ELRIPVRYLRE------------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSFPLPE 125 (410)
Q Consensus 75 ~~~~~i~~i~~------------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~i~~~~l~~ 125 (410)
..+.++.+..| ..+.|.++-+.. .++.+.+..-+++.+.+.|.+...-=..
T Consensus 152 ~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~ 231 (469)
T PLN02474 152 NSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLK 231 (469)
T ss_pred CCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHH
Confidence 22333332211 124455554332 2344444456889999999985333344
Q ss_pred HHHHHHhcCCceEEEEEecCcccccccceEEE-cCCCCcEEEEecCCCC--------ccccceeeeEEEEcHHHHHHhh
Q 015259 126 MLDAHRNYGGMGTILVIKVSAESASQFGELVA-DPDTNELLHYTEKPET--------FVSDLINCGVYVFTPDIFNAIQ 195 (410)
Q Consensus 126 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~-d~~~~~v~~i~ekp~~--------~~~~l~~~Giy~~~~~~~~~l~ 195 (410)
++..+..+++++++-+.+....+ ..-|.+.. + ..-+++.+.+-|.+ ....+.+++.++|+-+.++.+.
T Consensus 232 ~lg~~~~~~~e~~~ev~~Kt~~d-~kgG~l~~~d-gk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~ 308 (469)
T PLN02474 232 ILNHLIQNKNEYCMEVTPKTLAD-VKGGTLISYE-GKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLV 308 (469)
T ss_pred HHHHHHhcCCceEEEEeecCCCC-CCccEEEEEC-CEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHh
Confidence 77777778888777665432111 12354443 3 22357777776532 2456778999999988876653
No 238
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.49 E-value=1.4e-07 Score=75.20 Aligned_cols=91 Identities=20% Similarity=0.137 Sum_probs=67.4
Q ss_pred cEEccCeEECCCCEECCCcEEC---CCcEECCCcEECCCCEEee--------------eEECCCCEECCCCEEEeeEECC
Q 015259 290 ATIIGDVYVHPSAKIHPTAKIG---PNVSISANARIGAGVRLIS--------------CIILDGVEIMENAVVTNAIVGW 352 (410)
Q Consensus 290 ~~i~~~~~i~~~~~i~~~~~i~---~~~~ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~i~~~~i~~ 352 (410)
+.+.+++.|+++|.|+|.+++. +..+||+|+.|.+.+.|.| -+||.+.+..-+|..+-..+|+
T Consensus 21 s~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvFeVgc~s~A~kvGd 100 (190)
T KOG4042|consen 21 SDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVFEVGCKSSAKKVGD 100 (190)
T ss_pred cccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceEEeechhhhhhhcC
Confidence 4566777777888887777765 5678888888888777754 4566666666666666667788
Q ss_pred CCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 353 KSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 353 ~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
+.+|+..|.++++ +.+.++|.||+++.+
T Consensus 101 ~NVieskayvg~g---------v~vssgC~vGA~c~v 128 (190)
T KOG4042|consen 101 RNVIESKAYVGDG---------VSVSSGCSVGAKCTV 128 (190)
T ss_pred cceEeeeeEecCC---------cEEcCCceeccceEE
Confidence 8888887777777 777788888887777
No 239
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.49 E-value=1e-07 Score=75.32 Aligned_cols=88 Identities=19% Similarity=0.226 Sum_probs=67.7
Q ss_pred CcEEcc---CeEECCCCEECCCcEECC------------CcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCC
Q 015259 289 NATIIG---DVYVHPSAKIHPTAKIGP------------NVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWK 353 (410)
Q Consensus 289 ~~~i~~---~~~i~~~~~i~~~~~i~~------------~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~ 353 (410)
+..|.+ ++.+|+.|.++.++.|++ +..||+++.|+++|++.-..||+.+++|.+| +||++
T Consensus 45 g~iIRGDLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdhVFieE~cVVnAAqIgsyVh~Gkna-----viGrr 119 (184)
T KOG3121|consen 45 GVIIRGDLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDHVFIEEECVVNAAQIGSYVHLGKNA-----VIGRR 119 (184)
T ss_pred CcEEecccccceEcceEEeccccccCCchHHhcCCceeeeeeecceEEEecceEeehhhheeeeEeccce-----eEcCc
Confidence 444544 478888888888888885 3679999999999999888888888888776 66777
Q ss_pred CEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEc
Q 015259 354 SSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVT 390 (410)
Q Consensus 354 ~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~ 390 (410)
|++.+-|+|.++ +++...+.+.+-+++.
T Consensus 120 CVlkdCc~ild~---------tVlPpet~vppy~~~~ 147 (184)
T KOG3121|consen 120 CVLKDCCRILDD---------TVLPPETLVPPYSTIG 147 (184)
T ss_pred eEhhhheeccCC---------cccCcccccCCceEEc
Confidence 777777777776 6777777777776664
No 240
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.40 E-value=1.6e-05 Score=78.23 Aligned_cols=179 Identities=17% Similarity=0.276 Sum_probs=108.7
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCcccccc---CCccchhhhHhhccc------------------EEEe-cccchHHH
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR------------------IYLV-GFYEEREF 65 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi---~g~pli~~~l~~l~~------------------i~vv-~~~~~~~i 65 (410)
++.+|||||| .|+||+. ..||+|+|| .|+|++++.++.+.. ++|. ..+..+.+
T Consensus 106 kvavViLAGG--~GTRLg~---~~PK~ll~I~~~~gksL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 106 EVAVLILAGG--LGTRLGS---DKPKGLLECTPVKKKTLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CeEEEEECCC--CcCcCCC---CCCCeEeeecCCCCccHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 6899999999 9999964 899999999 489999999998752 3344 54666778
Q ss_pred HHHHHhhcccCCc---cEEEeeC----------------------CCCCCcHHHHHHh-----HHHhcccCCCcEEEEcC
Q 015259 66 ALYVSSISNELRI---PVRYLRE----------------------DKPHGSAGALYNF-----RDLIMEDNPSHIFLLNC 115 (410)
Q Consensus 66 ~~~~~~~~~~~~~---~i~~i~~----------------------~~~~g~~~~l~~~-----~~~l~~~~~~~~lvl~~ 115 (410)
.+++++. ..+|. .|.+..| ..+.|.++-.... ++.+....-+++.+...
T Consensus 181 ~~~f~~~-~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 259 (482)
T PTZ00339 181 RQFLEEN-NFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISI 259 (482)
T ss_pred HHHHHhc-cccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEec
Confidence 8888763 33343 2332211 1255776644432 34444444578888899
Q ss_pred CcccC-CChHHHHHHHHhcCC-ceEEEEEecCcccccccceEEEcCCCCcEEEEecCCC-----------Cccccceeee
Q 015259 116 DVCCS-FPLPEMLDAHRNYGG-MGTILVIKVSAESASQFGELVADPDTNELLHYTEKPE-----------TFVSDLINCG 182 (410)
Q Consensus 116 D~i~~-~~l~~~l~~~~~~~~-~~~l~~~~~~~~~~~~~~~v~~d~~~~~v~~i~ekp~-----------~~~~~l~~~G 182 (410)
|.+.. .--..++-.+...++ ++...+.+. .....-|++......-.|+.+.|-+. .......++.
T Consensus 260 DN~L~k~~DP~flG~~~~~~~~~~~~kvvk~--~~~EkvG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~ 337 (482)
T PTZ00339 260 DNILAKVLDPEFIGLASSFPAHDVLNKCVKR--EDDESVGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNIC 337 (482)
T ss_pred CcccccccCHHHhHHHHHCCchhheeeeecC--CCCCceeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceE
Confidence 98843 333445566665555 444333333 11223455543212225777766431 1112445677
Q ss_pred EEEEcHHHHHHh
Q 015259 183 VYVFTPDIFNAI 194 (410)
Q Consensus 183 iy~~~~~~~~~l 194 (410)
.++|+-+.++.+
T Consensus 338 ~h~fsl~fl~~~ 349 (482)
T PTZ00339 338 SHIFSLDFLKKV 349 (482)
T ss_pred EEEEEHHHHHHH
Confidence 888998887755
No 241
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.37 E-value=2.1e-06 Score=74.95 Aligned_cols=88 Identities=19% Similarity=0.179 Sum_probs=54.9
Q ss_pred CeEECCCCEECCCcEE--CCCcEECCCcEECCCCEEee-eEECCCCEECCC--CEEEeeEECCCCEECCCcEEccCCCCC
Q 015259 295 DVYVHPSAKIHPTAKI--GPNVSISANARIGAGVRLIS-CIILDGVEIMEN--AVVTNAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~~-~~i~~~~~i~~~--~~i~~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
...+|.++.++.++.+ ..+..||+++.+++++.|.. +..++...-... .....++|+++|+||.++.|.++
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpG---- 142 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPG---- 142 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCC----
Confidence 3444555555554443 24555666666666666642 112222222221 11225899999999999999998
Q ss_pred cceeeeEECCCCEECCCcEEcc
Q 015259 370 AKLGITILGEAVGVEDEVVVTN 391 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~ 391 (410)
++||++++||+++++.+
T Consensus 143 -----V~IG~gavigagsVVtk 159 (190)
T COG0110 143 -----VTIGEGAVIGAGSVVTK 159 (190)
T ss_pred -----EEECCCcEEeeCCEEeC
Confidence 89999999999988855
No 242
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.37 E-value=8.1e-07 Score=76.03 Aligned_cols=78 Identities=24% Similarity=0.321 Sum_probs=50.8
Q ss_pred ECCCCEECCCcEEC--CCcEECCCcEECCCCEEeeeEECCCCEECC---CCEEEeeEECCCCEECCCcEEccCCCCCcce
Q 015259 298 VHPSAKIHPTAKIG--PNVSISANARIGAGVRLISCIILDGVEIME---NAVVTNAIVGWKSSIGRWSRVQAEGDFNAKL 372 (410)
Q Consensus 298 i~~~~~i~~~~~i~--~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~---~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~ 372 (410)
|+|.+.||.|-.+. -+++||+-.+||.+++| ..++.+|. ++-=++-.|++||.||.++.|.++
T Consensus 151 ihpaa~ig~gilldhatgvvigeTAvvg~~vSi-----lH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgn------- 218 (269)
T KOG4750|consen 151 IHPAAKIGKGILLDHATGVVIGETAVVGDNVSI-----LHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGN------- 218 (269)
T ss_pred ccchhhcccceeeccccceeecceeEeccceee-----ecceeeccccccccccCCcccCCeEEccccEEeCC-------
Confidence 44444554444433 24566666666665555 44444432 222235689999999999999887
Q ss_pred eeeEECCCCEECCCcEE
Q 015259 373 GITILGEAVGVEDEVVV 389 (410)
Q Consensus 373 ~~~~i~~~~~i~~~~~v 389 (410)
..||++++|++|++|
T Consensus 219 --V~IGegavIaAGsvV 233 (269)
T KOG4750|consen 219 --VTIGEGAVIAAGSVV 233 (269)
T ss_pred --eeECCCcEEeccceE
Confidence 899999999888888
No 243
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.33 E-value=4.4e-06 Score=72.99 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=49.4
Q ss_pred CCcEECCCcEECCCCEEe---eeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCc
Q 015259 312 PNVSISANARIGAGVRLI---SCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEV 387 (410)
Q Consensus 312 ~~~~ig~~~~i~~~~~i~---~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~ 387 (410)
.+..+|.+|.++.++.+. +..||+++.++.++.|. .+..++...-..+. ....+.++||++||||.++
T Consensus 66 ~~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~--------~~~~~~v~IG~~vwIG~~a 137 (190)
T COG0110 66 KNLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGA--------LVGAGPVTIGEDVWIGAGA 137 (190)
T ss_pred cceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCChhhcccCC--------ceecCCeEECCCeEEcCcc
Confidence 355666666666666642 34466666666666555 22222111111110 0001114555555555555
Q ss_pred EE-------cceEEcCCcEEcccCCCcccC
Q 015259 388 VV-------TNSIVLPNKTLNVSVHQEIIL 410 (410)
Q Consensus 388 ~v-------~~~~v~~~~~v~~~~~~~~~~ 410 (410)
+| .+++|++|++|+.++|+..++
T Consensus 138 ~IlpGV~IG~gavigagsVVtkdvp~~~iv 167 (190)
T COG0110 138 VILPGVTIGEGAVIGAGSVVTKDVPPYGIV 167 (190)
T ss_pred EECCCEEECCCcEEeeCCEEeCccCCCeEE
Confidence 44 688899999999999987653
No 244
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.32 E-value=2.7e-06 Score=88.45 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=54.5
Q ss_pred cEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE-cce
Q 015259 314 VSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV-TNS 392 (410)
Q Consensus 314 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v-~~~ 392 (410)
+.||++|.|+++|.|..-...++.. .+.+++|+++|.||.++.|.++ +.||+++.|++++.+ ++.
T Consensus 617 v~IGd~~~I~~~~~i~~h~~~~~~~-----~~~~v~IG~~~~IG~~a~V~~g---------~~IGd~a~Ig~~SvV~~g~ 682 (695)
T TIGR02353 617 VTIGDDSTLNEGSVIQTHLFEDRVM-----KSDTVTIGDGATLGPGAIVLYG---------VVMGEGSVLGPDSLVMKGE 682 (695)
T ss_pred eEECCCCEECCCCEEEecccccccc-----ccCCeEECCCCEECCCCEECCC---------CEECCCCEECCCCEEcCCc
Confidence 4667777776666664311112211 2447899999999999999887 999999999999999 456
Q ss_pred EEcCCcEEccc
Q 015259 393 IVLPNKTLNVS 403 (410)
Q Consensus 393 ~v~~~~~v~~~ 403 (410)
.+.+++++-.+
T Consensus 683 ~vp~~s~~~G~ 693 (695)
T TIGR02353 683 EVPAHTRWRGN 693 (695)
T ss_pred ccCCCCEEEec
Confidence 78888876543
No 245
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=98.31 E-value=3.5e-06 Score=87.64 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=64.0
Q ss_pred eEECCCCEECCCcEE--CCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCccee
Q 015259 296 VYVHPSAKIHPTAKI--GPNVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLG 373 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i--~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~ 373 (410)
+.||+++.|++ ..+ -+...||+||.|+++|.+.+..+..+ ..++...+|+++|.||.+|.|.++
T Consensus 113 a~IG~~v~I~~-~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~-----~l~~g~i~IG~~~~IG~~s~I~~g-------- 178 (695)
T TIGR02353 113 AKIGKGVDIGS-LPPVCTDLLTIGAGTIVRKEVMLLGYRAERG-----RLHTGPVTLGRDAFIGTRSTLDID-------- 178 (695)
T ss_pred CEECCCCEEEe-eecccCCceEECCCCEECCCCEEEcccCCCC-----ceeecCcEECCCcEECCCCEEcCC--------
Confidence 45555555544 222 24567888888888888754333222 223345699999999999999887
Q ss_pred eeEECCCCEECCCcEEcc-eEEcCCcEEccc
Q 015259 374 ITILGEAVGVEDEVVVTN-SIVLPNKTLNVS 403 (410)
Q Consensus 374 ~~~i~~~~~i~~~~~v~~-~~v~~~~~v~~~ 403 (410)
+.||+++.|++++.+.+ ..|.++.++..+
T Consensus 179 -~~Igd~a~vgagS~V~~g~~v~~~~~~~G~ 208 (695)
T TIGR02353 179 -TSIGDGAQLGHGSALQGGQSIPDGERWHGS 208 (695)
T ss_pred -CEECCCCEECCCCEecCCcccCCCCEEEee
Confidence 89999999999999954 457777776554
No 246
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.25 E-value=1.4e-06 Score=69.59 Aligned_cols=103 Identities=23% Similarity=0.201 Sum_probs=71.3
Q ss_pred CeEECCCCEECCCcEECCCcEECCCcEECCCCEEe----eeEECCCCEECCCCEEEe--------------eEECCCCEE
Q 015259 295 DVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLI----SCIILDGVEIMENAVVTN--------------AIVGWKSSI 356 (410)
Q Consensus 295 ~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~----~~~i~~~~~i~~~~~i~~--------------~~i~~~~~i 356 (410)
.+.|.|.|.+..-+.|++.++|+++|++.+.+++. .-+||+|+.|.+.+.|.+ -+||.+.+.
T Consensus 8 svkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~NvF 87 (190)
T KOG4042|consen 8 SVKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTWNVF 87 (190)
T ss_pred eeeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEeccceE
Confidence 46778888888888889999999999999999886 578999999999888864 456665554
Q ss_pred CCCcEEccCCCCCcce-eeeEECCCCEECCCcEE-cceEEcCCcEEcc
Q 015259 357 GRWSRVQAEGDFNAKL-GITILGEAVGVEDEVVV-TNSIVLPNKTLNV 402 (410)
Q Consensus 357 ~~~~~i~~~~~~~~~~-~~~~i~~~~~i~~~~~v-~~~~v~~~~~v~~ 402 (410)
.-+|..... ++ ..-+|+..+.+|+|+.+ ++|+||++-.|..
T Consensus 88 eVgc~s~A~-----kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~ 130 (190)
T KOG4042|consen 88 EVGCKSSAK-----KVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFS 130 (190)
T ss_pred Eeechhhhh-----hhcCcceEeeeeEecCCcEEcCCceeccceEEec
Confidence 434332220 00 01456666666666666 4777777666543
No 247
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.24 E-value=5.7e-06 Score=73.84 Aligned_cols=112 Identities=18% Similarity=0.267 Sum_probs=75.3
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
.|||+|-+ .++|+.. |.|.+++|+|||+|+++.+.+ |+|.+. .+.+.+.+.+ ++..+.+.
T Consensus 1 iaiIpAR~--gS~rlp~------Knl~~l~gkpLi~~~i~~a~~s~~~d~IvVaTd--~~~i~~~~~~----~g~~v~~~ 66 (217)
T PF02348_consen 1 IAIIPARG--GSKRLPG------KNLKPLGGKPLIEYVIERAKQSKLIDEIVVATD--DEEIDDIAEE----YGAKVIFR 66 (217)
T ss_dssp EEEEEE-S--SSSSSTT------GGGSEETTEEHHHHHHHHHHHTTTTSEEEEEES--SHHHHHHHHH----TTSEEEE-
T ss_pred CEEEecCC--CCCCCCc------chhhHhCCccHHHHHHHHHHhCCCCCeEEEeCC--CHHHHHHHHH----cCCeeEEc
Confidence 38999999 8888866 999999999999999999988 555443 3455555543 55556555
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHHHhcCCc
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAHRNYGGM 136 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~~~~~~~ 136 (410)
..+...++......+...... ..+.++.+.||.++ ...+..+++.+.+...+
T Consensus 67 ~~~~~~~~~r~~~~~~~~~~~-~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 67 RGSLADDTDRFIEAIKHFLAD-DEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp -TTSSSHHHHHHHHHHHHTCS-TTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred ChhhcCCcccHHHHHHHhhhh-HHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 544444444444444444432 23468888999985 34588889988887654
No 248
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=98.11 E-value=0.00019 Score=66.50 Aligned_cols=180 Identities=15% Similarity=0.212 Sum_probs=112.1
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccC-CccchhhhHhhccc----------EEEecc-cchHHHHHHHHhhcc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYLVGF-YEEREFALYVSSISN 74 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~-g~pli~~~l~~l~~----------i~vv~~-~~~~~i~~~~~~~~~ 74 (410)
.++.+|+|||| .||||+- +.||.++|+. |+++++..++.+.. .+|-++ ..++...+++++...
T Consensus 2 ~kvavl~LaGG--~GTRLG~---~~pKg~~~v~~~~s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~ 76 (300)
T cd00897 2 NKLVVLKLNGG--LGTSMGC---TGPKSLIEVRDGKTFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAG 76 (300)
T ss_pred CcEEEEEecCC--cccccCC---CCCceeeecCCCCcHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCC
Confidence 46889999999 9999976 8899999995 55999999998865 344444 445667788876321
Q ss_pred cCCccEEEee------------------------CCCCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCcccCCChHH
Q 015259 75 ELRIPVRYLR------------------------EDKPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSFPLPE 125 (410)
Q Consensus 75 ~~~~~i~~i~------------------------~~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~i~~~~l~~ 125 (410)
.+..+.+.. ...+.|.++-... .++.+.+..-+++.+.+.|.+...-=..
T Consensus 77 -~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~ 155 (300)
T cd00897 77 -VNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLR 155 (300)
T ss_pred -CccCeEEEecCCcccCccccCccccccCCCcceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHH
Confidence 111222111 0124455554332 2333433446789999999975332344
Q ss_pred HHHHHHhcCCceEEEEEecCccccc-ccceEEE-cCCCCcEEEEecCCCC--------ccccceeeeEEEEcHHHHHHhh
Q 015259 126 MLDAHRNYGGMGTILVIKVSAESAS-QFGELVA-DPDTNELLHYTEKPET--------FVSDLINCGVYVFTPDIFNAIQ 195 (410)
Q Consensus 126 ~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~-d~~~~~v~~i~ekp~~--------~~~~l~~~Giy~~~~~~~~~l~ 195 (410)
++-.+..+++++.+-+.+. ..+. .-|.+.. + ..-+|+++.+-|.+ ....+.+++.++|+-+.++.+.
T Consensus 156 ~lg~~~~~~~~~~~evv~K--t~~dek~G~l~~~~-g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~~ 232 (300)
T cd00897 156 ILNHMVDNKAEYIMEVTDK--TRADVKGGTLIQYE-GKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRVV 232 (300)
T ss_pred HHHHHHhcCCceEEEEeec--CCCCCcccEEEEEC-CEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHHH
Confidence 7777777888877655543 2232 3444443 3 23357777766542 1345678888899988776543
No 249
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=5.2e-05 Score=65.40 Aligned_cols=110 Identities=22% Similarity=0.259 Sum_probs=71.7
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc------EEEecccch--HHHHHHHHhhcccCCcc
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR------IYLVGFYEE--REFALYVSSISNELRIP 79 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~------i~vv~~~~~--~~i~~~~~~~~~~~~~~ 79 (410)
++.+||-|-- .++||.. |.|+|+++.|||+++|+.+.+ ++|.++..+ +.+.++..+ .|
T Consensus 3 ~I~~IiQARm--gStRLpg------KvLlpL~~~pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~----~G-- 68 (241)
T COG1861 3 MILVIIQARM--GSTRLPG------KVLLPLGGEPMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRS----HG-- 68 (241)
T ss_pred cEEEEeeecc--cCccCCc------chhhhcCCCchHHHHHHHHhccccccceEEEecCCcchhHHHHHHHH----cC--
Confidence 3556666665 5677765 999999999999999999997 777766543 446665543 22
Q ss_pred EEEeeCCCCCCcHHH-HHHhHHHhcccCCCcEEEEcCCcccCC-C-hHHHHHHHHhcCCc
Q 015259 80 VRYLREDKPHGSAGA-LYNFRDLIMEDNPSHIFLLNCDVCCSF-P-LPEMLDAHRNYGGM 136 (410)
Q Consensus 80 i~~i~~~~~~g~~~~-l~~~~~~l~~~~~~~~lvl~~D~i~~~-~-l~~~l~~~~~~~~~ 136 (410)
+.+.. |+.+- |......++....+.++=+.||.++-. . +..+++.|.+++++
T Consensus 69 ~~vfr-----Gs~~dVL~Rf~~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaD 123 (241)
T COG1861 69 FYVFR-----GSEEDVLQRFIIAIKAYSADVVVRVTGDNPFLDPELVDAAVDRHLEKGAD 123 (241)
T ss_pred eeEec-----CCHHHHHHHHHHHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCc
Confidence 33322 34433 333333333322467778899998633 3 67888888877765
No 250
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=97.97 E-value=9.5e-05 Score=72.26 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=53.9
Q ss_pred CcEEEEcCCcccCCChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCCC---------cEEEEecCCCC-----
Q 015259 108 SHIFLLNCDVCCSFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDTN---------ELLHYTEKPET----- 173 (410)
Q Consensus 108 ~~~lvl~~D~i~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~~---------~v~~i~ekp~~----- 173 (410)
.-++|..+|.++...-...+. .. +..++++..+.+.+-.+..|+...| .++ .+.++..||..
T Consensus 54 pGv~V~s~D~vl~~~~~~~~~-~~--~~g~~~la~p~~~~~at~HGVfv~~-~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLID-WD--EPGVTALAHPSSLEYATNHGVFVLD-RQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCccccCC-CC--CCCEEEEEeeCCHHHhcCCeEEEeC-CCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 458999999443211111121 21 2566666666655567778998888 455 68888888741
Q ss_pred ------ccccceeeeEEEEcHHHHHHhhh
Q 015259 174 ------FVSDLINCGVYVFTPDIFNAIQG 196 (410)
Q Consensus 174 ------~~~~l~~~Giy~~~~~~~~~l~~ 196 (410)
...-+.++|++.|+.++.+.|-.
T Consensus 130 ~~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 130 SGAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred CCcccCCCcccccccceeccHHHHHHHHH
Confidence 22445689999999988776643
No 251
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.90 E-value=4.2e-05 Score=65.76 Aligned_cols=35 Identities=11% Similarity=0.314 Sum_probs=23.2
Q ss_pred eEECCCCEECCCcEE-cceEEcCCcEEcccCCCccc
Q 015259 375 TILGEAVGVEDEVVV-TNSIVLPNKTLNVSVHQEII 409 (410)
Q Consensus 375 ~~i~~~~~i~~~~~v-~~~~v~~~~~v~~~~~~~~~ 409 (410)
+.||.++.|-.|++| ++++|++|++|..|||++..
T Consensus 207 vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~ 242 (269)
T KOG4750|consen 207 VLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTL 242 (269)
T ss_pred eEEccccEEeCCeeECCCcEEeccceEEeccCCCce
Confidence 444444444444444 68888999999999988643
No 252
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.82 E-value=0.00037 Score=73.91 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=79.7
Q ss_pred cEEEEcCCcccC--CChHHHHHHHHhcCCceEEEEEecCcccccccceEEEcCCC-CcEEEEecCCC--------Ccccc
Q 015259 109 HIFLLNCDVCCS--FPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELVADPDT-NELLHYTEKPE--------TFVSD 177 (410)
Q Consensus 109 ~~lvl~~D~i~~--~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~d~~~-~~v~~i~ekp~--------~~~~~ 177 (410)
.++|..||.+.. ..+.+ -..++++.+....+.+-.+..|++..+.++ +++..+..||. ....-
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~~ 227 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDPSLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHLF 227 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccChhhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCeE
Confidence 699999998742 22222 123455555555544667788998887321 57888888884 23456
Q ss_pred ceeeeEEEEcHHHHHHhhhcc-cccccchhhhccchhHhhhhhccCCCCCeeeeccchhcccc----------CCCceeE
Q 015259 178 LINCGVYVFTPDIFNAIQGVS-SQRKDRENLRRVSSFEALQSATRNLTTDFVRLDQDILSPLA----------GKKQLYT 246 (410)
Q Consensus 178 l~~~Giy~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~d~l~~l~----------~~~~i~~ 246 (410)
+.|+|+|+|+..+++.|.... .... .. ..++++-.|++..|- ++.++..
T Consensus 228 l~D~g~~~~~~~a~~~L~~~~~~~~~--~~------------------~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i 287 (974)
T PRK13412 228 LMDIGIWLLSDRAVELLMKRSGKEDG--GK------------------LKYYDLYSDFGLALGTHPRIGDDELNALSVAI 287 (974)
T ss_pred EEeeeEEEEChHHHHHHHHhhhcccC--Cc------------------ceeeehHHHHHHhcCCCCCcchhhhcccceEE
Confidence 789999999998887666431 1100 01 123333344444332 1234455
Q ss_pred Eecc-ceeeecCCccchhhhhH
Q 015259 247 YETM-DFWEQIKTPGMSLKCSG 267 (410)
Q Consensus 247 ~~~~-g~~~~i~t~~~~~~an~ 267 (410)
.+.. +.|+-+||-.+|+....
T Consensus 288 ~~L~~~~F~H~GTs~E~l~~~~ 309 (974)
T PRK13412 288 LPLPGGEFYHYGTSRELISSTL 309 (974)
T ss_pred EEcCCceeEEecCcHHHhcCch
Confidence 5543 57888999988886443
No 253
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.74 E-value=0.00016 Score=62.53 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=79.9
Q ss_pred EEccCeEECCCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCCCEECCCCEEE-eeEECCCCEECCCcEEccCCCCC
Q 015259 291 TIIGDVYVHPSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDGVEIMENAVVT-NAIVGWKSSIGRWSRVQAEGDFN 369 (410)
Q Consensus 291 ~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~ 369 (410)
...+++.||+++.+. -.++|+...+|+++.|.+.++..++.|+..|.+. +.+..+++.||.++.|.+.
T Consensus 18 vv~gdViIG~nS~l~-------~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~dayiGE~~sI~gk---- 86 (277)
T COG4801 18 VVKGDVIIGKNSMLK-------YGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGK---- 86 (277)
T ss_pred EEeccEEEcccceee-------eeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcCceEEeccceeeee----
Confidence 344566666666664 4478888888888999888889999999999998 8899999999999999886
Q ss_pred cceeeeEECCCCEECCCcEEcceEEcCCcEEcccC
Q 015259 370 AKLGITILGEAVGVEDEVVVTNSIVLPNKTLNVSV 404 (410)
Q Consensus 370 ~~~~~~~i~~~~~i~~~~~v~~~~v~~~~~v~~~~ 404 (410)
.++..+-.||+++.|++..+..|-++-.+.
T Consensus 87 -----l~v~gdLdig~dV~Ieggfva~g~Ivirnp 116 (277)
T COG4801 87 -----LTVIGDLDIGADVIIEGGFVAKGWIVIRNP 116 (277)
T ss_pred -----EEEecccccccceEEecCeeecceEEEcCC
Confidence 777778899999999998888887775543
No 254
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.69 E-value=3.2e-05 Score=47.48 Aligned_cols=32 Identities=38% Similarity=0.523 Sum_probs=13.6
Q ss_pred EECCCCEECCCcEECCCcEECCCcEECCCCEE
Q 015259 297 YVHPSAKIHPTAKIGPNVSISANARIGAGVRL 328 (410)
Q Consensus 297 ~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i 328 (410)
.|++++.|++++.|.+++.||++|.|++++.|
T Consensus 3 ~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 3 VIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred EEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 34444444444444444444444444444443
No 255
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.66 E-value=0.00019 Score=62.09 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=58.3
Q ss_pred cEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcceE
Q 015259 314 VSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNSI 393 (410)
Q Consensus 314 ~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~~ 393 (410)
.++...+.||+++.+.-.++++...+|+++.|.+.+++.+++|+.+|.+.++ ++.+.++.||+++.+++-.
T Consensus 17 ivv~gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gN---------V~ve~dayiGE~~sI~gkl 87 (277)
T COG4801 17 IVVKGDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGN---------VIVENDAYIGEFSSIKGKL 87 (277)
T ss_pred EEEeccEEEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeecc---------EEEcCceEEeccceeeeeE
Confidence 3444455566666666678899999999999999999999999999999998 8889999999999886544
No 256
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.61 E-value=4.8e-05 Score=46.72 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=16.2
Q ss_pred eEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEE
Q 015259 348 AIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVV 389 (410)
Q Consensus 348 ~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v 389 (410)
++|++++.|++++.|.++ +.||+++.|+++++|
T Consensus 2 ~~Ig~~~~i~~~~~i~~~---------~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGG---------VVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEEETT---------EEE-TTEEEETTEEE
T ss_pred CEEcCCCEECCCcEecCC---------CEECCCCEEcCCCEE
Confidence 344455555555554444 555555555555544
No 257
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.57 E-value=9.2e-05 Score=44.63 Aligned_cols=28 Identities=39% Similarity=0.417 Sum_probs=8.9
Q ss_pred ECCCcEECCCCEEeeeEECCCCEECCCCE
Q 015259 316 ISANARIGAGVRLISCIILDGVEIMENAV 344 (410)
Q Consensus 316 ig~~~~i~~~~~i~~~~i~~~~~i~~~~~ 344 (410)
||++|.||+++.| ...|+++|.|+++++
T Consensus 4 IG~~~~ig~~~~i-gi~igd~~~i~~g~~ 31 (34)
T PF14602_consen 4 IGDNCFIGANSTI-GITIGDGVIIGAGVV 31 (34)
T ss_dssp E-TTEEE-TT-EE-TSEE-TTEEE-TTEE
T ss_pred ECCCEEECccccc-CCEEcCCCEECCCCE
Confidence 3444444444333 233344444444433
No 258
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=97.51 E-value=0.00038 Score=60.07 Aligned_cols=89 Identities=17% Similarity=0.211 Sum_probs=57.1
Q ss_pred CCccccccCC--ccchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEe-eCCCCCCcHHHHHHhHHHhc
Q 015259 31 IPKPLFPLGG--QPMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYL-REDKPHGSAGALYNFRDLIM 103 (410)
Q Consensus 31 ~pK~llpi~g--~pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i-~~~~~~g~~~~l~~~~~~l~ 103 (410)
.+|+|++++| +|||+|+++.+.. ++|++.... .+ ...+ +.++ ......|+..++..+.+...
T Consensus 3 ~dK~ll~~~g~~~~ll~~~~~~l~~~~~~iivv~~~~~-~~--------~~~~--~~~i~d~~~g~gpl~~~~~gl~~~~ 71 (178)
T PRK00576 3 RDKATLPLPGGTTTLVEHVVGIVGQRCAPVFVMAAPGQ-PL--------PELP--APVLRDELRGLGPLPATGRGLRAAA 71 (178)
T ss_pred CCCEeeEeCCCCcCHHHHHHHHHhhcCCEEEEECCCCc-cc--------ccCC--CCEeccCCCCCCcHHHHHHHHHHHH
Confidence 3899999999 9999999999875 666665332 11 1112 2333 23445677777765555432
Q ss_pred ccCCCcEEEEcCCccc-CCC-hHHHHHHH
Q 015259 104 EDNPSHIFLLNCDVCC-SFP-LPEMLDAH 130 (410)
Q Consensus 104 ~~~~~~~lvl~~D~i~-~~~-l~~~l~~~ 130 (410)
....+.++++.||+++ ..+ +..+++.+
T Consensus 72 ~~~~~~~lv~~~DmP~i~~~~i~~L~~~~ 100 (178)
T PRK00576 72 EAGARLAFVCAVDMPYLTVELIDDLARPA 100 (178)
T ss_pred hcCCCEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 1124789999999995 333 66666654
No 259
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.46 E-value=0.007 Score=59.10 Aligned_cols=182 Identities=18% Similarity=0.243 Sum_probs=106.0
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCC-ccchhhhHhhccc-----------EEEecccchHHHHHHHHhhcc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGG-QPMVHHPISACKR-----------IYLVGFYEEREFALYVSSISN 74 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g-~pli~~~l~~l~~-----------i~vv~~~~~~~i~~~~~~~~~ 74 (410)
.++.+|+|||| .||||+- ..||.++|+.. +++++..++.+.. ++......++...++++++ .
T Consensus 55 ~kvavl~LaGG--lGTrlG~---~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~ky-f 128 (420)
T PF01704_consen 55 GKVAVLKLAGG--LGTRLGC---SGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKY-F 128 (420)
T ss_dssp TCEEEEEEEES--BSGCCTE---SSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHG-C
T ss_pred CCEEEEEEcCc--ccCccCC---CCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHh-c
Confidence 47889999999 9999987 88999999954 4788877777664 3344445567788888873 2
Q ss_pred cCCccEEEeeC-----------------C------C---CCCcHHHHHH-----hHHHhcccCCCcEEEEcCCcccCCCh
Q 015259 75 ELRIPVRYLRE-----------------D------K---PHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCCSFPL 123 (410)
Q Consensus 75 ~~~~~i~~i~~-----------------~------~---~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~i~~~~l 123 (410)
..+.++.+..| . . +.|.|+-... .++.+.+..-+++.+.+.|.+...-=
T Consensus 129 g~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~D 208 (420)
T PF01704_consen 129 GLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVD 208 (420)
T ss_dssp GSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-
T ss_pred CCCcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccC
Confidence 22223322110 0 0 2366653322 23344344458899999999654333
Q ss_pred HHHHHHHHhcCCceEEEEEecCccccc-ccceEEEcCCCCcEEEEecCCCC--------ccccceeeeEEEEcHHHHHHh
Q 015259 124 PEMLDAHRNYGGMGTILVIKVSAESAS-QFGELVADPDTNELLHYTEKPET--------FVSDLINCGVYVFTPDIFNAI 194 (410)
Q Consensus 124 ~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~d~~~~~v~~i~ekp~~--------~~~~l~~~Giy~~~~~~~~~l 194 (410)
..++-.+.++++++.+-+.+. ..+. .-|++......-+++.+.+-|.. ....+.+++--+|+-..++.+
T Consensus 209 p~~lG~~~~~~~~~~~evv~K--t~~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~ 286 (420)
T PF01704_consen 209 PVFLGYMIEKNADFGMEVVPK--TSPDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRL 286 (420)
T ss_dssp HHHHHHHHHTT-SEEEEEEE---CSTTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHH
T ss_pred HHHHHHHHhccchhheeeeec--CCCCCceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHH
Confidence 457777777788877666654 2222 23444432022245555554421 234556788778898887655
Q ss_pred hh
Q 015259 195 QG 196 (410)
Q Consensus 195 ~~ 196 (410)
.+
T Consensus 287 ~~ 288 (420)
T PF01704_consen 287 LE 288 (420)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 260
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.29 E-value=0.00045 Score=41.59 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=12.7
Q ss_pred eEECCCCEECCCcEECCCcEECCCcEECCCCEE
Q 015259 296 VYVHPSAKIHPTAKIGPNVSISANARIGAGVRL 328 (410)
Q Consensus 296 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i 328 (410)
+.||+++.|++++.| ++.||++|.|++++.|
T Consensus 2 v~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I 32 (34)
T PF14602_consen 2 VTIGDNCFIGANSTI--GITIGDGVIIGAGVVI 32 (34)
T ss_dssp EEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEE
T ss_pred eEECCCEEECccccc--CCEEcCCCEECCCCEE
Confidence 344455555554444 2555555555555444
No 261
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.25 E-value=0.0096 Score=57.70 Aligned_cols=156 Identities=22% Similarity=0.323 Sum_probs=95.6
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccC-CccchhhhHhhccc----------EEEecccchHHHHHHHHhhccc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG-GQPMVHHPISACKR----------IYLVGFYEEREFALYVSSISNE 75 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~-g~pli~~~l~~l~~----------i~vv~~~~~~~i~~~~~~~~~~ 75 (410)
.++.+|+|||| .|+||+- ..||.+++|. |+++++.+.+.++. .++-.+...+.-..++... ..
T Consensus 104 ~klAvl~LaGG--qGtrlG~---~gPKgl~~V~~gks~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~-~Y 177 (472)
T COG4284 104 GKLAVLKLAGG--QGTRLGC---DGPKGLFEVKDGKSLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSN-DY 177 (472)
T ss_pred CceEEEEecCC--ccccccc---CCCceeEEecCCCcHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhh-hh
Confidence 46889999999 9999998 7899999999 88999999888775 3344444443334444331 11
Q ss_pred CCc---cEEEeeC-----------------------CCCCCcHH---HHHH--hHHHhcccCCCcEEEEcCCccc-CCCh
Q 015259 76 LRI---PVRYLRE-----------------------DKPHGSAG---ALYN--FRDLIMEDNPSHIFLLNCDVCC-SFPL 123 (410)
Q Consensus 76 ~~~---~i~~i~~-----------------------~~~~g~~~---~l~~--~~~~l~~~~~~~~lvl~~D~i~-~~~l 123 (410)
++. +|.+..| ..+.|.|+ +|.. ..+.+.++.-+.+.|.+.|.+. ..|+
T Consensus 178 ~~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~~G~e~lfV~nIDNL~~~vD~ 257 (472)
T COG4284 178 FGLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIAQGIEYLFVSNIDNLGATVDL 257 (472)
T ss_pred cCCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHhcCceEEEEecccccccccCH
Confidence 121 1221110 11345544 3332 2333434556788899999963 4454
Q ss_pred HHHHHHHHhcCCceEEEEEecCccccc-ccceEE-EcCCCCcEEEEecCCC
Q 015259 124 PEMLDAHRNYGGMGTILVIKVSAESAS-QFGELV-ADPDTNELLHYTEKPE 172 (410)
Q Consensus 124 ~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~-~d~~~~~v~~i~ekp~ 172 (410)
. ++.++...+.+.++-++.. ..+. .-|++. .+ ...+|+.+.+-|.
T Consensus 258 ~-~lg~~~~~~~e~~~e~t~K--t~a~ekvG~Lv~~~-g~~rllEysev~~ 304 (472)
T COG4284 258 K-FLGFMAETNYEYLMETTDK--TKADEKVGILVTYD-GKLRLLEYSEVPN 304 (472)
T ss_pred H-HHHHHHhcCcceeEEEeec--ccccccceEEEEeC-CceEEEEEecCCh
Confidence 3 6677777788877666553 2222 245544 55 4568888887664
No 262
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.12 E-value=0.015 Score=57.55 Aligned_cols=181 Identities=18% Similarity=0.308 Sum_probs=110.2
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccC---CccchhhhHhhccc--------------------EEEecc-cch
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLG---GQPMVHHPISACKR--------------------IYLVGF-YEE 62 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~---g~pli~~~l~~l~~--------------------i~vv~~-~~~ 62 (410)
.++.+|+|||| .||||+- ..||.+++|+ ++++++...+.+.. .+|-++ ..+
T Consensus 115 gkvavvlLAGG--qGTRLG~---~~PKg~~~Iglps~kslfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~ 189 (493)
T PLN02435 115 GKLAVVLLSGG--QGTRLGS---SDPKGCFNIGLPSGKSLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTD 189 (493)
T ss_pred CCEEEEEeCCC--cccccCC---CCCccceecCCCCCCcHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchh
Confidence 46778999999 9999987 8899999885 78999998887621 244444 445
Q ss_pred HHHHHHHHhhcccCCc---cEEEeeC---------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEE
Q 015259 63 REFALYVSSISNELRI---PVRYLRE---------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLL 113 (410)
Q Consensus 63 ~~i~~~~~~~~~~~~~---~i~~i~~---------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl 113 (410)
+...+++++. ..+|+ .|.+..| ..+.|.++-... .++.+.+..-+++.+.
T Consensus 190 ~~T~~ff~~~-~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~ 268 (493)
T PLN02435 190 EATRKFFESH-KYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCY 268 (493)
T ss_pred HHHHHHHHhC-CCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEE
Confidence 6678888763 33443 3443322 135577664442 2334433445788888
Q ss_pred cCCccc-CCChHHHHHHHHhcCCceEEEEEecCccccc-ccceEEEcCCCC--cEEEEecCCCC-----------ccccc
Q 015259 114 NCDVCC-SFPLPEMLDAHRNYGGMGTILVIKVSAESAS-QFGELVADPDTN--ELLHYTEKPET-----------FVSDL 178 (410)
Q Consensus 114 ~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~v~~d~~~~--~v~~i~ekp~~-----------~~~~l 178 (410)
..|.+. ..--..++-.+...+.++.+-+.+. ..+. .-|.+.....++ .|..+.|-+.. .....
T Consensus 269 ~vDN~L~~~~DP~flG~~~~~~~d~~~kVv~K--~~~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~ 346 (493)
T PLN02435 269 GVDNALVRVADPTFLGYFIDKGVASAAKVVRK--AYPQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCW 346 (493)
T ss_pred ecccccccccCHHHHHHHHhcCCceEEEeeec--CCCCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccch
Confidence 889863 3334556777777777776655433 2222 236554311233 36666554321 12344
Q ss_pred eeeeEEEEcHHHHHHhh
Q 015259 179 INCGVYVFTPDIFNAIQ 195 (410)
Q Consensus 179 ~~~Giy~~~~~~~~~l~ 195 (410)
.+.+.++|+-+.++.+.
T Consensus 347 gnI~~h~fs~~fL~~~~ 363 (493)
T PLN02435 347 SNVCLHMFTLDFLNQVA 363 (493)
T ss_pred hhHHHhhccHHHHHHHH
Confidence 56677888888877664
No 263
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=96.48 E-value=0.035 Score=51.92 Aligned_cols=139 Identities=15% Similarity=0.169 Sum_probs=81.6
Q ss_pred EEEEEecCCCCCCccccCCCCCCcccccc---CCccchhhhHhhccc--------------EEEecc-cchHHHHHHHHh
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR--------------IYLVGF-YEEREFALYVSS 71 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi---~g~pli~~~l~~l~~--------------i~vv~~-~~~~~i~~~~~~ 71 (410)
.+|+|||| .|+||+- +.||.++|+ .|+++++..++.+.. .+|-++ ..++...+++++
T Consensus 2 a~vllaGG--~GTRLG~---~~pKg~~~v~~~~~~s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~ 76 (315)
T cd06424 2 VFVLVAGG--LGERLGY---SGIKIGLPVELTTNTTYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEE 76 (315)
T ss_pred EEEEecCC--CccccCC---CCCceeeeccCCCCCcHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHH
Confidence 47999999 9999987 889999999 588999999888743 344444 445677888876
Q ss_pred hcccCCc---cEEEeeC------------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEEcCCccc
Q 015259 72 ISNELRI---PVRYLRE------------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLLNCDVCC 119 (410)
Q Consensus 72 ~~~~~~~---~i~~i~~------------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl~~D~i~ 119 (410)
. ..+|. .|.+..| ..+.|.++-... .++.+.+..-+++.+..-|.+.
T Consensus 77 n-~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L 155 (315)
T cd06424 77 N-NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNAL 155 (315)
T ss_pred C-CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhh
Confidence 3 22332 2222110 124566654432 2334433445677777777664
Q ss_pred -CCChHHHHHHHHhcCCceEEEEEecCcccccccceEE
Q 015259 120 -SFPLPEMLDAHRNYGGMGTILVIKVSAESASQFGELV 156 (410)
Q Consensus 120 -~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~v~ 156 (410)
..-..-++-.+...+.++...+.+. .....-|++.
T Consensus 156 ~~~adP~fiG~~~~~~~d~~~k~v~~--~~~E~vG~~~ 191 (315)
T cd06424 156 AFKAIPAVLGVSATKSLDMNSLTVPR--KPKEAIGALC 191 (315)
T ss_pred hhccChhhEEEEecCCCceEeEEEeC--CCCCceeeEE
Confidence 2223344444555566665544432 2223456554
No 264
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.29 E-value=0.14 Score=52.48 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=84.5
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCcccccc---CCccchhhhHhhccc-----------------EEEecc-cchHHH
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPL---GGQPMVHHPISACKR-----------------IYLVGF-YEEREF 65 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi---~g~pli~~~l~~l~~-----------------i~vv~~-~~~~~i 65 (410)
.++.+|+|||| .|+||+- .-||.++|+ .|+++++..++.+.. .+|-++ ..++..
T Consensus 127 ~kvavllLaGG--lGTRLG~---~~pK~~lpv~~~~gkt~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T 201 (615)
T PLN02830 127 GNAAFVLVAGG--LGERLGY---SGIKVALPTETATGTCYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHART 201 (615)
T ss_pred CcEEEEEecCC--cccccCC---CCCCcceecccCCCCcHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHH
Confidence 47889999999 9999986 779999997 488999999888632 344444 345667
Q ss_pred HHHHHhhcccCCc---cEEEeeC------------------------CCCCCcHHHHHH-----hHHHhcccCCCcEEEE
Q 015259 66 ALYVSSISNELRI---PVRYLRE------------------------DKPHGSAGALYN-----FRDLIMEDNPSHIFLL 113 (410)
Q Consensus 66 ~~~~~~~~~~~~~---~i~~i~~------------------------~~~~g~~~~l~~-----~~~~l~~~~~~~~lvl 113 (410)
.+++++. ..+|. .|.+..| ..+.|.++-... .++.+.+..-+++.+.
T Consensus 202 ~~~~~~n-~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~ 280 (615)
T PLN02830 202 LKLLERN-DYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDPYKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFF 280 (615)
T ss_pred HHHHHHC-CccCCCccceEEEEcCcceeEecCCCcccccCCCCCccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEE
Confidence 7888763 23332 2322111 124455543322 2334444445788888
Q ss_pred cCCccc-CCChHHHHHHHHhcCCceEEEEEec
Q 015259 114 NCDVCC-SFPLPEMLDAHRNYGGMGTILVIKV 144 (410)
Q Consensus 114 ~~D~i~-~~~l~~~l~~~~~~~~~~~l~~~~~ 144 (410)
..|.+. ......++-.+..++.++.+.+.+.
T Consensus 281 ~vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K 312 (615)
T PLN02830 281 QDTNGLVFKAIPAALGVSATKGFDMNSLAVPR 312 (615)
T ss_pred eccchhhhcccHHHhHHHHhcCCceEEEEEEC
Confidence 888853 2223777888887888877766543
No 265
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.00 E-value=1.6 Score=41.89 Aligned_cols=131 Identities=17% Similarity=0.247 Sum_probs=77.3
Q ss_pred CCceEEEEEecCCCCCCccccCCCCCCccccccCCc-cchh---hhHhhccc--------EEEecccchHHHHHHHHhhc
Q 015259 6 DDKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ-PMVH---HPISACKR--------IYLVGFYEEREFALYVSSIS 73 (410)
Q Consensus 6 ~~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~-pli~---~~l~~l~~--------i~vv~~~~~~~i~~~~~~~~ 73 (410)
..++.++=|-|| .|+-|+= .-||+++++-+- ++++ ++++.|.+ ++......++.-..++++..
T Consensus 101 L~KLavlKLNGG--lGttmGc---~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~ 175 (498)
T KOG2638|consen 101 LNKLAVLKLNGG--LGTTMGC---KGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA 175 (498)
T ss_pred hhheEEEEecCC--cCCcccc---CCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc
Confidence 456778889999 9999987 789999999754 6555 45555555 44445555555666666531
Q ss_pred ccCCccEEE--------------ee-----------CCCCCCcHH---HHHH--hHHHhcccCCCcEEEEcCCccc-CCC
Q 015259 74 NELRIPVRY--------------LR-----------EDKPHGSAG---ALYN--FRDLIMEDNPSHIFLLNCDVCC-SFP 122 (410)
Q Consensus 74 ~~~~~~i~~--------------i~-----------~~~~~g~~~---~l~~--~~~~l~~~~~~~~lvl~~D~i~-~~~ 122 (410)
. ...++.. ++ ..-+.|.++ +++. .++.+-.+..+.++|.+.|.+. ..|
T Consensus 176 ~-~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~llaqGkEylFVSNiDNLGAtvD 254 (498)
T KOG2638|consen 176 G-SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLAQGKEYLFVSNIDNLGATVD 254 (498)
T ss_pred C-CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHhCCceEEEEeccccccceee
Confidence 1 1111111 00 011334443 3332 2333333556889999999995 456
Q ss_pred hHHHHHHHHhcCCceEEEEEe
Q 015259 123 LPEMLDAHRNYGGMGTILVIK 143 (410)
Q Consensus 123 l~~~l~~~~~~~~~~~l~~~~ 143 (410)
|. +|+...+.+....|-++.
T Consensus 255 L~-ILn~~i~~~~ey~MEvTd 274 (498)
T KOG2638|consen 255 LN-ILNHVINNNIEYLMEVTD 274 (498)
T ss_pred HH-HHHHHhcCCCceEEEecc
Confidence 54 566666666666666554
No 266
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=95.26 E-value=0.039 Score=54.13 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=32.5
Q ss_pred CcEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEcc
Q 015259 319 NARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 319 ~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 364 (410)
.+.+.+++.|.+|+|..++.++++++|++|.++.++.||.+|.|.+
T Consensus 273 ~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisG 318 (414)
T PF07959_consen 273 PSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISG 318 (414)
T ss_pred ccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCCCEEEC
Confidence 3445566677777777777777777777777777777777777776
No 267
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.87 E-value=0.2 Score=41.48 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=66.2
Q ss_pred cccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCC
Q 015259 36 FPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107 (410)
Q Consensus 36 lpi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~ 107 (410)
+|.-|. ..+..+|+.+.+ |+|+-....+...+.+++... ...+++++..++..|.+.++..+.+... .
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~-~~~~i~~i~~~~n~g~~~~~n~~~~~a~---~ 79 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE-SDPNIRYIRNPENLGFSAARNRGIKHAK---G 79 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC-CSTTEEEEEHCCCSHHHHHHHHHHHH-----S
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc-cccccccccccccccccccccccccccc---e
Confidence 444555 566777776655 666644333334444554322 3557888887777788888888888876 4
Q ss_pred CcEEEEcCCcccCCC-hHHHHHHHHhcCCceEEEEE
Q 015259 108 SHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTILVI 142 (410)
Q Consensus 108 ~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~l~~~ 142 (410)
+.++++..|.....+ +..+++...+.+.++.+...
T Consensus 80 ~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~ 115 (169)
T PF00535_consen 80 EYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSV 115 (169)
T ss_dssp SEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEE
T ss_pred eEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEE
Confidence 688999999987666 88888888876666544433
No 268
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=92.77 E-value=1 Score=36.15 Aligned_cols=86 Identities=12% Similarity=0.039 Sum_probs=55.0
Q ss_pred ccchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEE
Q 015259 41 QPMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLL 113 (410)
Q Consensus 41 ~pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl 113 (410)
.+++.++++++.+ ++++.....+...+.+.+.... ...+.........|.+.++..+.+... .+.++++
T Consensus 9 ~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~---~d~v~~~ 84 (156)
T cd00761 9 EPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK-DPRVIRVINEENQGLAAARNAGLKAAR---GEYILFL 84 (156)
T ss_pred HHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc-CCCeEEEEecCCCChHHHHHHHHHHhc---CCEEEEE
Confidence 3788888888765 5555544444445555443211 123455555667788888888888774 4789999
Q ss_pred cCCcccCCC-hHHHHHHH
Q 015259 114 NCDVCCSFP-LPEMLDAH 130 (410)
Q Consensus 114 ~~D~i~~~~-l~~~l~~~ 130 (410)
.+|.++..+ +..++..+
T Consensus 85 d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 85 DADDLLLPDWLERLVAEL 102 (156)
T ss_pred CCCCccCccHHHHHHHHH
Confidence 999988665 55553443
No 269
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=92.60 E-value=0.34 Score=42.18 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=53.5
Q ss_pred CccchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEc
Q 015259 40 GQPMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114 (410)
Q Consensus 40 g~pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~ 114 (410)
-+|||+|+++.+.. +++++.. +.+..+... + .+.++.+.. .|.+.++..+.+.+... .+.++++.
T Consensus 29 ~~~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~----~--~v~~i~~~~-~G~~~si~~al~~~~~~-~~~vlv~~ 98 (195)
T TIGR03552 29 ALAMLRDVITALRGAGAGAVLVVSPD--PALLEAARN----L--GAPVLRDPG-PGLNNALNAALAEAREP-GGAVLILM 98 (195)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh----c--CCEEEecCC-CCHHHHHHHHHHHhhcc-CCeEEEEe
Confidence 35899999998876 5666553 233333322 2 244554433 38899999988877421 24799999
Q ss_pred CCccc--CCChHHHHHHHH
Q 015259 115 CDVCC--SFPLPEMLDAHR 131 (410)
Q Consensus 115 ~D~i~--~~~l~~~l~~~~ 131 (410)
||+++ ...+..+++...
T Consensus 99 ~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 99 ADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCCCCCCHHHHHHHHHhcc
Confidence 99985 345777777553
No 270
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=90.94 E-value=2 Score=37.05 Aligned_cols=93 Identities=12% Similarity=0.083 Sum_probs=58.2
Q ss_pred ccccCCcc---chhhhHhhccc-------EEEecccc-hHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhc
Q 015259 35 LFPLGGQP---MVHHPISACKR-------IYLVGFYE-EREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM 103 (410)
Q Consensus 35 llpi~g~p---li~~~l~~l~~-------i~vv~~~~-~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~ 103 (410)
++|+-|.. .|..+|+.+.+ ++|+-... .+...+.+.....+.+ +.++......|.+.+...+.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~--i~~i~~~~n~G~~~a~N~g~~~a~ 80 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP--LKVVPLEKNRGLGKALNEGLKHCT 80 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHHhcCC--eEEEEcCccccHHHHHHHHHHhcC
Confidence 35565553 67788888765 55543322 3344444444333333 666665566788888887777654
Q ss_pred ccCCCcEEEEcCCcccCCC-hHHHHHHHHh
Q 015259 104 EDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 104 ~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~ 132 (410)
.+.++++.+|.+...+ +..+++...+
T Consensus 81 ---gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 81 ---YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred ---CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 4778899999886544 7777776644
No 271
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=89.69 E-value=2.8 Score=34.49 Aligned_cols=94 Identities=14% Similarity=0.107 Sum_probs=54.7
Q ss_pred cccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCC
Q 015259 36 FPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNP 107 (410)
Q Consensus 36 lpi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~ 107 (410)
+|.-|. ..|..+|+.+.+ ++|+-....+...+.+..........+.++......|.+.++..+.+... .
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~~~~~~~---~ 79 (180)
T cd06423 3 VPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGKAGALNAGLRHAK---G 79 (180)
T ss_pred ecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCchHHHHHHHHhcC---C
Confidence 344444 456666666554 55553333333333333322221223455555667788888888877774 4
Q ss_pred CcEEEEcCCcccCCC-hHHHHHHHHh
Q 015259 108 SHIFLLNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 108 ~~~lvl~~D~i~~~~-l~~~l~~~~~ 132 (410)
+.++++.+|.....+ +..++..+.+
T Consensus 80 ~~i~~~D~D~~~~~~~l~~~~~~~~~ 105 (180)
T cd06423 80 DIVVVLDADTILEPDALKRLVVPFFA 105 (180)
T ss_pred CEEEEECCCCCcChHHHHHHHHHhcc
Confidence 788999999887555 7777455544
No 272
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=89.55 E-value=3.4 Score=34.02 Aligned_cols=90 Identities=16% Similarity=0.057 Sum_probs=57.0
Q ss_pred ccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCC
Q 015259 37 PLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (410)
Q Consensus 37 pi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~ 108 (410)
|.-|+ .++..+++.+.+ ++|+-....+...+.+.+.. ..+.++......|.+.++..+.+... .+
T Consensus 4 ~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~----~~~~~~~~~~~~g~~~a~n~~~~~~~---~~ 76 (166)
T cd04186 4 VNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF----PEVRLIRNGENLGFGAGNNQGIREAK---GD 76 (166)
T ss_pred EecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC----CCeEEEecCCCcChHHHhhHHHhhCC---CC
Confidence 34444 567777777754 55554433334444444321 15666666677788888888888774 47
Q ss_pred cEEEEcCCcccCCC-hHHHHHHHHhc
Q 015259 109 HIFLLNCDVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 109 ~~lvl~~D~i~~~~-l~~~l~~~~~~ 133 (410)
.++++..|.....+ +..+++...+.
T Consensus 77 ~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 77 YVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred EEEEECCCcEECccHHHHHHHHHHhC
Confidence 78899999887555 77777755443
No 273
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=89.37 E-value=2.5 Score=36.13 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=61.2
Q ss_pred CccchhhhHhhccc-------EEEecccch---HHHHHHHHhhcccCCc-cEEEeeCCCCCCcHHHHHHhHHHhcccCCC
Q 015259 40 GQPMVHHPISACKR-------IYLVGFYEE---REFALYVSSISNELRI-PVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (410)
Q Consensus 40 g~pli~~~l~~l~~-------i~vv~~~~~---~~i~~~~~~~~~~~~~-~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~ 108 (410)
|.|++-|.+..... ++++-...+ ....+.+++ -++. +|...+.....|.+.+...+..+.. .+
T Consensus 17 Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k---~yg~d~i~l~pR~~klGLgtAy~hgl~~a~---g~ 90 (238)
T KOG2978|consen 17 NLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQK---IYGEDNILLKPRTKKLGLGTAYIHGLKHAT---GD 90 (238)
T ss_pred CCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHH---HhCCCcEEEEeccCcccchHHHHhhhhhcc---CC
Confidence 45677777776554 666622222 222233332 2333 6777777788888888988888775 35
Q ss_pred cEEEEcCCccc-CCChHHHHHHHHhcCCceEEEE
Q 015259 109 HIFLLNCDVCC-SFPLPEMLDAHRNYGGMGTILV 141 (410)
Q Consensus 109 ~~lvl~~D~i~-~~~l~~~l~~~~~~~~~~~l~~ 141 (410)
.++++.+|+-. +.-+.++++.+.+.+.++++.+
T Consensus 91 fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GT 124 (238)
T KOG2978|consen 91 FIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGT 124 (238)
T ss_pred eEEEEeCccCCCchhHHHHHHHhhccCcceeeee
Confidence 56788999874 4458899888777666755543
No 274
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=89.23 E-value=4 Score=36.73 Aligned_cols=83 Identities=12% Similarity=0.051 Sum_probs=49.7
Q ss_pred EEEecccchHHHHHHHHhhcccCC-ccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHH
Q 015259 54 IYLVGFYEEREFALYVSSISNELR-IPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (410)
Q Consensus 54 i~vv~~~~~~~i~~~~~~~~~~~~-~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~ 131 (410)
|+|+-....+.-.+.+++....++ ..+.++......|.+.++..+.+... .+.++++.+|...+.+ +..+++...
T Consensus 43 iivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~---g~~i~~lD~D~~~~~~~l~~l~~~~~ 119 (243)
T PLN02726 43 IIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHAS---GDFVVIMDADLSHHPKYLPSFIKKQR 119 (243)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcC---CCEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 666633222222333333222232 24566655666788888888777654 4788899999887544 778887765
Q ss_pred hcCCceEE
Q 015259 132 NYGGMGTI 139 (410)
Q Consensus 132 ~~~~~~~l 139 (410)
+.+.+++.
T Consensus 120 ~~~~~~v~ 127 (243)
T PLN02726 120 ETGADIVT 127 (243)
T ss_pred hcCCcEEE
Confidence 55555443
No 275
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=88.62 E-value=2.9 Score=36.52 Aligned_cols=84 Identities=19% Similarity=0.123 Sum_probs=51.6
Q ss_pred EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHh
Q 015259 54 IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 54 i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~ 132 (410)
++|+-....+...+.+++...+++..+.++......|.++++..+.+... .+.++++.+|.....+ +..+++...+
T Consensus 33 iivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~n~G~~~a~~~g~~~a~---gd~i~~ld~D~~~~~~~l~~l~~~~~~ 109 (211)
T cd04188 33 IIVVDDGSKDGTAEVARKLARKNPALIRVLTLPKNRGKGGAVRAGMLAAR---GDYILFADADLATPFEELEKLEEALKT 109 (211)
T ss_pred EEEEeCCCCCchHHHHHHHHHhCCCcEEEEEcccCCCcHHHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 56663333333333344332233333566666667788999988888775 4788899999887544 7888877555
Q ss_pred cCCceEEE
Q 015259 133 YGGMGTIL 140 (410)
Q Consensus 133 ~~~~~~l~ 140 (410)
.+.++++.
T Consensus 110 ~~~~~v~g 117 (211)
T cd04188 110 SGYDIAIG 117 (211)
T ss_pred cCCcEEEE
Confidence 55554443
No 276
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=88.36 E-value=5.7 Score=35.65 Aligned_cols=98 Identities=14% Similarity=0.138 Sum_probs=60.2
Q ss_pred CCCCCc--cccccCCc-cchhhhHhhccc---------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHH
Q 015259 28 SLNIPK--PLFPLGGQ-PMVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGAL 95 (410)
Q Consensus 28 t~~~pK--~llpi~g~-pli~~~l~~l~~---------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l 95 (410)
....|+ -++|.-|. ..|...|+.+.+ ++|+-....+...+.+++.... .+.++......|-+.++
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~v~~i~~~~~~g~~~a~ 101 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK---GVKLLRFPERRGKAAAL 101 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC---cEEEEEcCCCCChHHHH
Confidence 344454 45666666 456666655433 4444333333344444443221 46666666667888888
Q ss_pred HHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHH
Q 015259 96 YNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (410)
Q Consensus 96 ~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~ 131 (410)
..+.+... .+.++++.+|.+...+ +..+++...
T Consensus 102 n~gi~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 102 NRALALAT---GEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred HHHHHHcC---CCEEEEEccccCcCHHHHHHHHHHhc
Confidence 88877775 4788999999987655 778877764
No 277
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=87.46 E-value=5 Score=35.94 Aligned_cols=59 Identities=8% Similarity=0.016 Sum_probs=40.1
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCceEEE
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTIL 140 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~l~ 140 (410)
++..+......|-+.++..+.+... .+.++++.+|.....+ +..++..+.+.+.++.++
T Consensus 60 ~i~~~~~~~~~G~~~a~n~g~~~a~---gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 60 RVVVVPPSQPRTKPKACNYALAFAR---GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred eEEEecCCCCCchHHHHHHHHHhcC---CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 4445444455677888888887664 4788899999987655 778888776443444433
No 278
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=85.70 E-value=16 Score=33.48 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=55.7
Q ss_pred cchhhhHhhccc----EEEeccc--chHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcC
Q 015259 42 PMVHHPISACKR----IYLVGFY--EEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNC 115 (410)
Q Consensus 42 pli~~~l~~l~~----i~vv~~~--~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~ 115 (410)
..+...|+.+.+ |+||=.. ..+.+...+.+ ..++.++...+..|-++++..+.+...+...+.++++..
T Consensus 8 ~~l~~~l~sl~~q~~~iiVVDN~S~~~~~~~~~~~~-----~~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~ 82 (281)
T TIGR01556 8 EHLGELITSLPKQVDRIIAVDNSPHSDQPLKNARLR-----GQKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQ 82 (281)
T ss_pred HHHHHHHHHHHhcCCEEEEEECcCCCcHhHHHHhcc-----CCCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECC
Confidence 355566666664 6666332 22344443322 135778877778899999988887763333578999999
Q ss_pred CcccCCC-hHHHHHHHHhc
Q 015259 116 DVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 116 D~i~~~~-l~~~l~~~~~~ 133 (410)
|.....+ +..+++...+.
T Consensus 83 D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 83 DSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9987655 67777765543
No 279
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.32 E-value=5.3 Score=34.62 Aligned_cols=92 Identities=10% Similarity=0.028 Sum_probs=53.2
Q ss_pred ccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCC
Q 015259 37 PLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (410)
Q Consensus 37 pi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~ 108 (410)
|.-|. ..|...|+.+.+ ++|+-....+...+.++....+++..+.++......|.+.++..+....+ .+
T Consensus 5 p~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~n~g~~~~~---g~ 81 (214)
T cd04196 5 ATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNFESLLQAAD---GD 81 (214)
T ss_pred EecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHHHHHHHhCC---CC
Confidence 33344 355666666543 55553322222233344333333334556666667788888877766554 47
Q ss_pred cEEEEcCCcccCCC-hHHHHHHHH
Q 015259 109 HIFLLNCDVCCSFP-LPEMLDAHR 131 (410)
Q Consensus 109 ~~lvl~~D~i~~~~-l~~~l~~~~ 131 (410)
.++++..|.....+ +..+++...
T Consensus 82 ~v~~ld~Dd~~~~~~l~~~~~~~~ 105 (214)
T cd04196 82 YVFFCDQDDIWLPDKLERLLKAFL 105 (214)
T ss_pred EEEEECCCcccChhHHHHHHHHHh
Confidence 88899999876544 788877633
No 280
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=85.22 E-value=5 Score=35.21 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=40.0
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCceE
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGT 138 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~ 138 (410)
.+.++......|.+.++..+.+... .+.++++.+|.....+ +..+++.....+.+++
T Consensus 54 ~i~~~~~~~n~G~~~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 111 (224)
T cd06442 54 RVRLIVRPGKRGLGSAYIEGFKAAR---GDVIVVMDADLSHPPEYIPELLEAQLEGGADLV 111 (224)
T ss_pred ceEEEecCCCCChHHHHHHHHHHcC---CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEE
Confidence 3566666677788888888887765 3678899999876544 7777776555455543
No 281
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=84.79 E-value=1.9 Score=46.62 Aligned_cols=39 Identities=10% Similarity=0.090 Sum_probs=25.6
Q ss_pred CEEeeeEECCCCEECCC-CEEEeeEECCCCEECCCcEEcc
Q 015259 326 VRLISCIILDGVEIMEN-AVVTNAIVGWKSSIGRWSRVQA 364 (410)
Q Consensus 326 ~~i~~~~i~~~~~i~~~-~~i~~~~i~~~~~i~~~~~i~~ 364 (410)
+.|.||++..++.++++ +.|++|.|+.++.||.++.|.+
T Consensus 332 ~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisg 371 (974)
T PRK13412 332 MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITG 371 (974)
T ss_pred eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEec
Confidence 44566666777777665 3366677777777777776666
No 282
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=84.70 E-value=3.7 Score=31.44 Aligned_cols=53 Identities=28% Similarity=0.274 Sum_probs=24.1
Q ss_pred EECCCcEECCCcEECCCcEECCCCEEeeeEECC-CCEECCCCEEEeeEECCCCEEC
Q 015259 303 KIHPTAKIGPNVSISANARIGAGVRLISCIILD-GVEIMENAVVTNAIVGWKSSIG 357 (410)
Q Consensus 303 ~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~-~~~i~~~~~i~~~~i~~~~~i~ 357 (410)
.|++++.+.++......+.|. + .+...+--+ ...|+.++.+...+-.+.+.+.
T Consensus 4 ~I~~~~~i~G~i~~~~~v~i~-G-~v~G~i~~~g~v~i~~~~~v~G~i~~~~~~i~ 57 (101)
T PF04519_consen 4 IIGKGTKIEGDISSDGDVRID-G-RVEGNIKAEGKVKIGGNGEVKGDIKADDVIIS 57 (101)
T ss_pred EECCCCEEEEEEEECcEEEEE-E-EEEEEEEEceEEEEcCCCEEEEEEEEeEEEEc
Confidence 444444444444444444442 1 133222222 4555556666544555555553
No 283
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.67 E-value=6.3 Score=34.00 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=52.3
Q ss_pred cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEc
Q 015259 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114 (410)
Q Consensus 42 pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~ 114 (410)
..|..+|+.+.+ ++|+-....+...+.+++..... ++.++......|.+.++..+.+.......+.++++.
T Consensus 10 ~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~~~~--~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld 87 (202)
T cd04185 10 DLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLGDLD--NIVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMD 87 (202)
T ss_pred HHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhcCCC--ceEEEECccccchhhHHHHHHHHHhccCCCEEEEeC
Confidence 456666666654 55553333334445555432222 256666666677777777766655322246788999
Q ss_pred CCcccCCC-hHHHHHHHH
Q 015259 115 CDVCCSFP-LPEMLDAHR 131 (410)
Q Consensus 115 ~D~i~~~~-l~~~l~~~~ 131 (410)
.|...+.+ +..+++...
T Consensus 88 ~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 88 DDAIPDPDALEKLLAYAD 105 (202)
T ss_pred CCCCcChHHHHHHHHHHh
Confidence 99987655 666666554
No 284
>PRK11204 N-glycosyltransferase; Provisional
Probab=84.49 E-value=6.1 Score=38.88 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=59.6
Q ss_pred ccccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccC
Q 015259 35 LFPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDN 106 (410)
Q Consensus 35 llpi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~ 106 (410)
++|.-|. ..|..+++.+.+ ++|+.....+...+.+++...++ .++.++...+..|-++++..+.+...
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~-~~v~~i~~~~n~Gka~aln~g~~~a~--- 134 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQI-PRLRVIHLAENQGKANALNTGAAAAR--- 134 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CcEEEEEcCCCCCHHHHHHHHHHHcC---
Confidence 4555565 677777777654 55554333333333333322222 24667665566788888888877654
Q ss_pred CCcEEEEcCCcccCCC-hHHHHHHHHhc
Q 015259 107 PSHIFLLNCDVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 107 ~~~~lvl~~D~i~~~~-l~~~l~~~~~~ 133 (410)
.+.++++.+|.+.+.+ +..+++.+++.
T Consensus 135 ~d~i~~lDaD~~~~~d~L~~l~~~~~~~ 162 (420)
T PRK11204 135 SEYLVCIDGDALLDPDAAAYMVEHFLHN 162 (420)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhC
Confidence 4788999999987666 78888776543
No 285
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=84.30 E-value=7.7 Score=36.12 Aligned_cols=55 Identities=16% Similarity=0.078 Sum_probs=41.0
Q ss_pred ccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCC
Q 015259 78 IPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGG 135 (410)
Q Consensus 78 ~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~ 135 (410)
..++++..+...|-+.+.-.+.+... .+.++++++|.....+ |..+++...+...
T Consensus 58 ~~v~vi~~~~n~G~~~a~N~g~~~A~---gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 58 PKVKVLRLKKREGLIRARIAGARAAT---GDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHcc---CCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 45777776777788888877777664 4788999999987655 8888887765443
No 286
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=84.30 E-value=8.5 Score=33.16 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=28.3
Q ss_pred cEEEeeCCCCCCc---HHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHH
Q 015259 79 PVRYLREDKPHGS---AGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAH 130 (410)
Q Consensus 79 ~i~~i~~~~~~g~---~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~ 130 (410)
++.++......|. +.++..+.+... .+.++++.+|...+.+ +..+++..
T Consensus 59 ~~~~~~~~~~~g~~~~~~~~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 59 DARLLIGGEKVGINPKVNNLIKGYEEAR---YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred cEEEEecCCcCCCCHhHHHHHHHHHhCC---CCEEEEECCCceEChhHHHHHHHHh
Confidence 4555544333343 234444554443 4778899999887555 67776654
No 287
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=84.03 E-value=8.4 Score=32.55 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=40.3
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCceEEE
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTIL 140 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~l~ 140 (410)
++.++......|.+.++..+.+... .+.++++.+|.....+ +..+++. .+.+.++++.
T Consensus 56 ~i~~i~~~~n~G~~~a~n~g~~~a~---~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~g 114 (181)
T cd04187 56 RVKVIRLSRNFGQQAALLAGLDHAR---GDAVITMDADLQDPPELIPEMLAK-WEEGYDVVYG 114 (181)
T ss_pred CEEEEEecCCCCcHHHHHHHHHhcC---CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEEE
Confidence 5666665667788888888877665 4788999999887554 7777776 3444554433
No 288
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=83.91 E-value=7.7 Score=32.72 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=50.1
Q ss_pred EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHh
Q 015259 54 IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 54 i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~ 132 (410)
++|+-....+...+.++....++. .+.++...+..|.+.++..+.+... .+.++++.+|.....+ +..++....+
T Consensus 31 iivvd~~s~d~~~~~~~~~~~~~~-~~~~~~~~~n~G~~~a~n~g~~~a~---gd~i~~lD~D~~~~~~~l~~l~~~~~~ 106 (185)
T cd04179 31 IIVVDDGSTDGTAEIARELAARVP-RVRVIRLSRNFGKGAAVRAGFKAAR---GDIVVTMDADLQHPPEDIPKLLEKLLE 106 (185)
T ss_pred EEEEcCCCCCChHHHHHHHHHhCC-CeEEEEccCCCCccHHHHHHHHHhc---CCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 555533322233333433222222 3456666677788888888888775 3788999999876544 7778876455
Q ss_pred cCCceEEE
Q 015259 133 YGGMGTIL 140 (410)
Q Consensus 133 ~~~~~~l~ 140 (410)
.+.++++.
T Consensus 107 ~~~~~v~g 114 (185)
T cd04179 107 GGADVVIG 114 (185)
T ss_pred cCCcEEEE
Confidence 55554444
No 289
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=83.64 E-value=9.3 Score=36.25 Aligned_cols=58 Identities=12% Similarity=0.071 Sum_probs=40.6
Q ss_pred CccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccC-CChHHHHHHHHhcCCceE
Q 015259 77 RIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCS-FPLPEMLDAHRNYGGMGT 138 (410)
Q Consensus 77 ~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~-~~l~~~l~~~~~~~~~~~ 138 (410)
+.++..+......|.+.++..+.+... .+.++++.+|...+ ..+.++++... .+.+++
T Consensus 64 ~~~v~~i~~~~n~G~~~A~~~G~~~A~---gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 64 DSHIVAILLNRNYGQHSAIMAGFSHVT---GDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHhCC---CCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 345555544566788899988877664 47788999999865 45888888764 355644
No 290
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=82.58 E-value=7.4 Score=34.53 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=53.5
Q ss_pred cccCCc-c-chhhhHhhccc-------EEEecccc-hHHHHHHHHhhcccCCccEEEeeCCCCCCc-HHHHHHhHHHhcc
Q 015259 36 FPLGGQ-P-MVHHPISACKR-------IYLVGFYE-EREFALYVSSISNELRIPVRYLREDKPHGS-AGALYNFRDLIME 104 (410)
Q Consensus 36 lpi~g~-p-li~~~l~~l~~-------i~vv~~~~-~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~-~~~l~~~~~~l~~ 104 (410)
+|.-|. | +|...|+.+.+ ++|+-... +....+.+++..++++.++.++......|- ++++..+.+....
T Consensus 4 ip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a~~ 83 (236)
T cd06435 4 VPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERTAP 83 (236)
T ss_pred EeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhcCC
Confidence 455555 2 57777777655 55553222 222222222221223445666654444563 7778777776531
Q ss_pred cCCCcEEEEcCCcccCCC-hHHHHHHHH
Q 015259 105 DNPSHIFLLNCDVCCSFP-LPEMLDAHR 131 (410)
Q Consensus 105 ~~~~~~lvl~~D~i~~~~-l~~~l~~~~ 131 (410)
..+.++++.+|.....+ +..++....
T Consensus 84 -~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 84 -DAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred -CCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 13678999999887655 788887664
No 291
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=80.55 E-value=2.9 Score=36.92 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=47.9
Q ss_pred ccccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCc-cEEEeeCCCCCC---cHHHHHHhHHHh
Q 015259 35 LFPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRI-PVRYLREDKPHG---SAGALYNFRDLI 102 (410)
Q Consensus 35 llpi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~-~i~~i~~~~~~g---~~~~l~~~~~~l 102 (410)
++|.-|. +.+...|+.+.+ ++|+.....+...+.+++....++. .+.++......| .+.++..+.+..
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~ 85 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAA 85 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH-
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhc
Confidence 3455555 566777777665 5555432222222223322223332 567765544333 455666666655
Q ss_pred cccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCc
Q 015259 103 MEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGM 136 (410)
Q Consensus 103 ~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~ 136 (410)
. .+.++++..|.+.+.+ +..+++.+...+..
T Consensus 86 ~---~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~ 117 (228)
T PF13641_consen 86 R---GDYILFLDDDTVLDPDWLERLLAAFADPGVG 117 (228)
T ss_dssp -----SEEEEE-SSEEE-CHHHHHHHHHHHBSS--
T ss_pred C---CCEEEEECCCcEECHHHHHHHHHHHHhCCCC
Confidence 4 4788999999998655 77888777333333
No 292
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=80.28 E-value=11 Score=31.15 Aligned_cols=62 Identities=16% Similarity=0.163 Sum_probs=34.4
Q ss_pred cEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcce
Q 015259 320 ARIGAGVRLISCIILDGVEIMENAVVTNAIVGWKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTNS 392 (410)
Q Consensus 320 ~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~~ 392 (410)
+.|++..+|...+--+...|. +.+..+....+.+.|...+++.+ -+=++.-.|..|+++.+.
T Consensus 58 iiv~~~g~V~gei~a~~~iv~-G~v~Gni~~a~~Vei~~~g~v~G----------dI~~~~i~v~~Ga~f~G~ 119 (146)
T COG1664 58 IVVGESGRVEGEIEAEHLIVE-GKVEGNILAAERVELYPGGRVIG----------DITTKEITVEEGAIFEGD 119 (146)
T ss_pred EEECCccEEEEEEEeCEEEEe-eEEEEEEEEeeEEEEcCCcEEee----------eecccEEEEccCCEEEeE
Confidence 555555555544444433333 34444455566677777776666 355555666666666433
No 293
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=78.70 E-value=11 Score=37.52 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=58.2
Q ss_pred cccccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhccc
Q 015259 34 PLFPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMED 105 (410)
Q Consensus 34 ~llpi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~ 105 (410)
-++|.-|. ..|..+++.+.+ |+|+.....+...+.+++...+. .++.++......|-++++..+.....
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~-~~v~vv~~~~n~Gka~AlN~gl~~a~-- 155 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAED-PRLRVIHLAHNQGKAIALRMGAAAAR-- 155 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhC-CCEEEEEeCCCCCHHHHHHHHHHhCC--
Confidence 45666777 557777777654 66664332322233333322222 24566554556677888887776653
Q ss_pred CCCcEEEEcCCcccCCC-hHHHHHHHHhc
Q 015259 106 NPSHIFLLNCDVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 106 ~~~~~lvl~~D~i~~~~-l~~~l~~~~~~ 133 (410)
.+.++++.+|.+.+.+ +..+++.+.+.
T Consensus 156 -~d~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 156 -SEYLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred -CCEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 4788999999998666 77777766443
No 294
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=78.62 E-value=10 Score=31.83 Aligned_cols=91 Identities=8% Similarity=0.079 Sum_probs=50.6
Q ss_pred ccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEee-CCCCCCcHHHHHHhHHHhcccCC
Q 015259 37 PLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLR-EDKPHGSAGALYNFRDLIMEDNP 107 (410)
Q Consensus 37 pi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~-~~~~~g~~~~l~~~~~~l~~~~~ 107 (410)
|.-|. ..+..+|+.+.+ ++|+-....+...+.+++.....+.++..+. .....|.+.++..+.+... .
T Consensus 4 p~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~---g 80 (182)
T cd06420 4 TTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAK---G 80 (182)
T ss_pred eecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhc---C
Confidence 34444 456667777654 5666443344444445443222233333332 2334456666666666654 4
Q ss_pred CcEEEEcCCcccCCC-hHHHHHHH
Q 015259 108 SHIFLLNCDVCCSFP-LPEMLDAH 130 (410)
Q Consensus 108 ~~~lvl~~D~i~~~~-l~~~l~~~ 130 (410)
+.++++.+|.+...+ +..+++.+
T Consensus 81 ~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 81 DYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred CEEEEEcCCcccCHHHHHHHHHHh
Confidence 788999999887555 66666654
No 295
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=78.59 E-value=13 Score=32.93 Aligned_cols=80 Identities=11% Similarity=0.024 Sum_probs=46.5
Q ss_pred EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHh
Q 015259 54 IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 54 i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~ 132 (410)
++|+-....+...+.++....+ ...+.++.. ...|.+.++..+.+... .+.++++.+|.....+ +..+++...+
T Consensus 34 vivvd~~s~d~~~~~~~~~~~~-~~~v~~i~~-~~~~~~~a~N~g~~~a~---~d~v~~lD~D~~~~~~~l~~~~~~~~~ 108 (249)
T cd02525 34 IIVVDGGSTDGTREIVQEYAAK-DPRIRLIDN-PKRIQSAGLNIGIRNSR---GDIIIRVDAHAVYPKDYILELVEALKR 108 (249)
T ss_pred EEEEeCCCCccHHHHHHHHHhc-CCeEEEEeC-CCCCchHHHHHHHHHhC---CCEEEEECCCccCCHHHHHHHHHHHhc
Confidence 5555333333334444443222 123555543 34466677777777664 4788899999886544 7888876655
Q ss_pred cCCceE
Q 015259 133 YGGMGT 138 (410)
Q Consensus 133 ~~~~~~ 138 (410)
.+..+.
T Consensus 109 ~~~~~v 114 (249)
T cd02525 109 TGADNV 114 (249)
T ss_pred CCCCEE
Confidence 444433
No 296
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=78.48 E-value=9.3 Score=37.00 Aligned_cols=95 Identities=14% Similarity=0.217 Sum_probs=51.9
Q ss_pred ccccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCC-ccEEEeeCCCCCCcH---HHHHHhHHHh
Q 015259 35 LFPLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELR-IPVRYLREDKPHGSA---GALYNFRDLI 102 (410)
Q Consensus 35 llpi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~-~~i~~i~~~~~~g~~---~~l~~~~~~l 102 (410)
++|.-|. +.|...|+.+.+ |+++.....+.-.+.+++...+++ .+++++......|.. .++.++.+..
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a 125 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA 125 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc
Confidence 5666666 778888887764 544432222221223333222232 356666544444432 3344333333
Q ss_pred cccCCCcEEEEcCCcccCCC-hHHHHHHHHh
Q 015259 103 MEDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 103 ~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~ 132 (410)
+ .+.++++.+|.....+ ++.++....+
T Consensus 126 ~---ge~i~~~DaD~~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 126 R---HDILVIADSDISVGPDYLRQVVAPLAD 153 (373)
T ss_pred c---CCEEEEECCCCCcChhHHHHHHHHhcC
Confidence 2 4788999999987666 7777766643
No 297
>PRK10073 putative glycosyl transferase; Provisional
Probab=77.89 E-value=16 Score=34.71 Aligned_cols=57 Identities=11% Similarity=-0.057 Sum_probs=39.0
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCCceEE
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGTI 139 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~l 139 (410)
.+.++.+ +..|.+.+...+.+... .+.++++.+|-....+ +..+++...+.+.++++
T Consensus 62 ~i~vi~~-~n~G~~~arN~gl~~a~---g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 62 HVRLLHQ-ANAGVSVARNTGLAVAT---GKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred CEEEEEC-CCCChHHHHHHHHHhCC---CCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 5666654 35677778777777665 4788899999876544 77777776555555443
No 298
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=77.52 E-value=15 Score=32.10 Aligned_cols=97 Identities=9% Similarity=0.021 Sum_probs=51.8
Q ss_pred cccCCc-cchhhhHhhccc---------EEEecccchHHHHHHHHhhcccCCccEEEeeCC--CCCCcHHHHHHhHHHhc
Q 015259 36 FPLGGQ-PMVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLRED--KPHGSAGALYNFRDLIM 103 (410)
Q Consensus 36 lpi~g~-pli~~~l~~l~~---------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~--~~~g~~~~l~~~~~~l~ 103 (410)
+|.-|. ..|..+|+.+.. |+|+-....+...+.++.........+.++... ...|-..++..+.+...
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~ 82 (229)
T cd04192 3 IAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAK 82 (229)
T ss_pred EEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccCcccchhHHHHHHHHHHhc
Confidence 344444 456666666543 455533222222233320001123356665443 34555666666666544
Q ss_pred ccCCCcEEEEcCCcccCCC-hHHHHHHHHhcCC
Q 015259 104 EDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYGG 135 (410)
Q Consensus 104 ~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~ 135 (410)
.+.++++.+|.+...+ +..+++.+.+.+.
T Consensus 83 ---~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~ 112 (229)
T cd04192 83 ---GDWIVTTDADCVVPSNWLLTFVAFIQKEQI 112 (229)
T ss_pred ---CCEEEEECCCcccCHHHHHHHHHHhhcCCC
Confidence 4788999999987655 7788776654443
No 299
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=76.08 E-value=28 Score=30.50 Aligned_cols=85 Identities=19% Similarity=0.227 Sum_probs=49.7
Q ss_pred chhhhHhhccc---------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCC-CcHHHHHHhHHHhcccCCCcEEE
Q 015259 43 MVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPH-GSAGALYNFRDLIMEDNPSHIFL 112 (410)
Q Consensus 43 li~~~l~~l~~---------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~-g~~~~l~~~~~~l~~~~~~~~lv 112 (410)
++...|+.+.. ++|+-....+...+.+.+...++ .+.++...... +.++++..+.+... .+.+++
T Consensus 16 ~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~n~~~~~a~---~d~i~~ 90 (234)
T cd06421 16 IVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY--GYRYLTRPDNRHAKAGNLNNALAHTT---GDFVAI 90 (234)
T ss_pred HHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc--CceEEEeCCCCCCcHHHHHHHHHhCC---CCEEEE
Confidence 45666666543 55554444445555555543222 33444333333 34566667776654 478899
Q ss_pred EcCCcccCCC-hHHHHHHHHh
Q 015259 113 LNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 113 l~~D~i~~~~-l~~~l~~~~~ 132 (410)
+.+|...+.+ +..+++...+
T Consensus 91 lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 91 LDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred EccccCcCccHHHHHHHHHhc
Confidence 9999987666 7777776654
No 300
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=76.04 E-value=18 Score=35.95 Aligned_cols=95 Identities=15% Similarity=0.089 Sum_probs=55.2
Q ss_pred ccccCCc-cchhhhHhhccc---------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcc
Q 015259 35 LFPLGGQ-PMVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIME 104 (410)
Q Consensus 35 llpi~g~-pli~~~l~~l~~---------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~ 104 (410)
++|.-|. ..|..+++.+.+ |+|+-....+.-.+.+++..+..+ .+.+.......|-+.++..+.+...
T Consensus 54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~-~v~v~~~~~~~Gka~AlN~gl~~s~- 131 (439)
T TIGR03111 54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFP-GLSLRYMNSDQGKAKALNAAIYNSI- 131 (439)
T ss_pred EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCC-CeEEEEeCCCCCHHHHHHHHHHHcc-
Confidence 3455555 667777777653 455533323333333333222221 2333322344678888888877664
Q ss_pred cCCCcEEEEcCCcccCCC-hHHHHHHHHhc
Q 015259 105 DNPSHIFLLNCDVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 105 ~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~ 133 (410)
.+.++++.+|.+.+.+ +..+++.+.+.
T Consensus 132 --g~~v~~~DaD~~~~~d~L~~l~~~f~~~ 159 (439)
T TIGR03111 132 --GKYIIHIDSDGKLHKDAIKNMVTRFENN 159 (439)
T ss_pred --CCEEEEECCCCCcChHHHHHHHHHHHhC
Confidence 4678899999997665 78888776543
No 301
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=74.64 E-value=24 Score=30.16 Aligned_cols=49 Identities=18% Similarity=0.157 Sum_probs=36.0
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHH
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAH 130 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~ 130 (410)
.+.++......|.+.++..+.+... .+.++++.+|.....+ +..+++.+
T Consensus 59 ~~~~~~~~~~~g~~~a~n~g~~~a~---~d~i~~ld~D~~~~~~~l~~~~~~~ 108 (202)
T cd04184 59 RIKVVFREENGGISAATNSALELAT---GEFVALLDHDDELAPHALYEVVKAL 108 (202)
T ss_pred CEEEEEcccCCCHHHHHHHHHHhhc---CCEEEEECCCCcCChHHHHHHHHHH
Confidence 4666655666778888887777664 4678899999887655 78888776
No 302
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=74.51 E-value=20 Score=30.35 Aligned_cols=85 Identities=13% Similarity=0.046 Sum_probs=50.0
Q ss_pred cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEc
Q 015259 42 PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLN 114 (410)
Q Consensus 42 pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~ 114 (410)
..+..+|+.+.+ |+|+-....+...+.+++... .+.++...+..|.+.++..+.+... .+.++++.
T Consensus 11 ~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~----~~~~~~~~~~~g~~~a~n~~~~~a~---~~~v~~ld 83 (202)
T cd06433 11 ETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED----KITYWISEPDKGIYDAMNKGIALAT---GDIIGFLN 83 (202)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh----hcEEEEecCCcCHHHHHHHHHHHcC---CCEEEEeC
Confidence 466666766654 666633323333444443211 1233333456678888888877665 47888999
Q ss_pred CCcccC-CChHHHHHHHHhc
Q 015259 115 CDVCCS-FPLPEMLDAHRNY 133 (410)
Q Consensus 115 ~D~i~~-~~l~~~l~~~~~~ 133 (410)
+|.... ..+..++....+.
T Consensus 84 ~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 84 SDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred CCcccCchHHHHHHHHHHhC
Confidence 998764 4478877544433
No 303
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=72.61 E-value=10 Score=28.93 Aligned_cols=67 Identities=22% Similarity=0.247 Sum_probs=38.4
Q ss_pred CcEECCCcEECCCCEEeeeEECCCCEECCCCEEEeeEEC-CCCEECCCcEEccCCCCCcceeeeEECCCCEECCCcEEcc
Q 015259 313 NVSISANARIGAGVRLISCIILDGVEIMENAVVTNAIVG-WKSSIGRWSRVQAEGDFNAKLGITILGEAVGVEDEVVVTN 391 (410)
Q Consensus 313 ~~~ig~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~i~-~~~~i~~~~~i~~~~~~~~~~~~~~i~~~~~i~~~~~v~~ 391 (410)
+........|+.++.|...+-.+.+.+. +. +...+.. +.+.|...+.+.+ .+-.+...|.+++.+.+
T Consensus 30 ~i~~~g~v~i~~~~~v~G~i~~~~~~i~-G~-v~G~v~a~~~v~i~~~~~v~G----------~i~~~~l~v~~ga~i~G 97 (101)
T PF04519_consen 30 NIKAEGKVKIGGNGEVKGDIKADDVIIS-GS-VDGNVEASGKVEIYGTARVEG----------DITAGKLEVEGGASING 97 (101)
T ss_pred EEEEceEEEEcCCCEEEEEEEEeEEEEc-CE-EeEEEEECceEEEeCCEEEEE----------EEEECEEEEeCCCEEEE
Confidence 4444345666667776655555555554 22 4433333 5666777777776 45555566666666644
No 304
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=72.15 E-value=9 Score=37.66 Aligned_cols=42 Identities=29% Similarity=0.540 Sum_probs=34.7
Q ss_pred CceEEEEEecCCCCCCccccCCCCCCccccccCCc---cchhhhHhhccc
Q 015259 7 DKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQ---PMVHHPISACKR 53 (410)
Q Consensus 7 ~~~~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~---pli~~~l~~l~~ 53 (410)
.+..++++||| .|+|++- ..||.+.+++-. .++++..+.+..
T Consensus 96 ~~~a~~llaGg--qgtRLg~---~~pkg~~~~G~~~~~slf~~qae~il~ 140 (477)
T KOG2388|consen 96 GKVAVVLLAGG--QGTRLGS---SGPKGCYPIGLPSGKSLFQIQAERILK 140 (477)
T ss_pred CcceEEEeccC--ceeeecc---CCCcceeecCCccccchhhhhHHHHHH
Confidence 46789999999 9999988 889999999854 588887776554
No 305
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=71.09 E-value=55 Score=27.58 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=50.9
Q ss_pred cccCCc-cchhhhHhhccc---------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhc--
Q 015259 36 FPLGGQ-PMVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIM-- 103 (410)
Q Consensus 36 lpi~g~-pli~~~l~~l~~---------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~-- 103 (410)
+|.-|. ..|..+|+.+.+ |+|+.....+...+.++. ++..+.........|.+.++..+.....
T Consensus 3 Ip~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~----~~~~~~~~~~~~~~gk~~aln~g~~~a~~~ 78 (183)
T cd06438 3 IPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA----AGATVLERHDPERRGKGYALDFGFRHLLNL 78 (183)
T ss_pred EeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH----cCCeEEEeCCCCCCCHHHHHHHHHHHHHhc
Confidence 344443 445555555432 555533333333344333 2333333333445677888877776652
Q ss_pred ccCCCcEEEEcCCcccCCC-hHHHHHHHHh
Q 015259 104 EDNPSHIFLLNCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 104 ~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~ 132 (410)
....+.++++.+|.....+ +..+++.+.+
T Consensus 79 ~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 79 ADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 1124678899999998655 6777776643
No 306
>PRK10018 putative glycosyl transferase; Provisional
Probab=70.37 E-value=54 Score=30.31 Aligned_cols=84 Identities=15% Similarity=0.152 Sum_probs=52.3
Q ss_pred chhhhHhhccc-------EEEec--ccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEE
Q 015259 43 MVHHPISACKR-------IYLVG--FYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLL 113 (410)
Q Consensus 43 li~~~l~~l~~-------i~vv~--~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl 113 (410)
.|..+|+.+.+ ++|+- +...+.+.++.... -..++.++......|.+.+.-.+.+... .+.++++
T Consensus 19 ~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~---~~~ri~~i~~~~n~G~~~a~N~gi~~a~---g~~I~~l 92 (279)
T PRK10018 19 LAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTAL---NDPRITYIHNDINSGACAVRNQAIMLAQ---GEYITGI 92 (279)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHc---CCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEEEE
Confidence 34555555443 55552 22224455555431 1236777777777888888877777665 4788899
Q ss_pred cCCcccCCC-hHHHHHHHHh
Q 015259 114 NCDVCCSFP-LPEMLDAHRN 132 (410)
Q Consensus 114 ~~D~i~~~~-l~~~l~~~~~ 132 (410)
.+|.....+ +..+++...+
T Consensus 93 DaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 93 DDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred CCCCCCCccHHHHHHHHHHh
Confidence 999876544 7777776543
No 307
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=69.48 E-value=44 Score=29.67 Aligned_cols=108 Identities=13% Similarity=0.165 Sum_probs=66.2
Q ss_pred EEEEEecCCCCCCccccCCCCCCccccccCCccchhhhHhhccc---EEEecccchHHHHHHHHhhcccCCccEEEeeCC
Q 015259 10 VAVIMVGGPTKGTRFRPLSLNIPKPLFPLGGQPMVHHPISACKR---IYLVGFYEEREFALYVSSISNELRIPVRYLRED 86 (410)
Q Consensus 10 ~aiIlaaG~~~g~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~---i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~ 86 (410)
..+++|.| .-..|.. .++ -+-..++|...+..+.. +-|+++.. ++..+..++ +..++.++.+....
T Consensus 90 ~illlCTG--~F~~l~~-----~~~--lleP~ril~~lV~al~~~~~vGVivP~~-eQ~~~~~~k-W~~l~~~~~~a~as 158 (221)
T PF07302_consen 90 VILLLCTG--EFPGLTA-----RNP--LLEPDRILPPLVAALVGGHQVGVIVPLP-EQIAQQAEK-WQPLGNPVVVAAAS 158 (221)
T ss_pred EEEEeccC--CCCCCCC-----Ccc--eeehHHhHHHHHHHhcCCCeEEEEecCH-HHHHHHHHH-HHhcCCCeEEEEeC
Confidence 35678888 5555544 344 45567888888888887 66666653 344443333 23444566666555
Q ss_pred CCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHH
Q 015259 87 KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAH 130 (410)
Q Consensus 87 ~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~ 130 (410)
...|+.+.+..+...+.+. .-+++++.|=-. ....+++++..
T Consensus 159 Py~~~~~~l~~Aa~~L~~~-gadlIvLDCmGY-t~~~r~~~~~~ 200 (221)
T PF07302_consen 159 PYEGDEEELAAAARELAEQ-GADLIVLDCMGY-TQEMRDIVQRA 200 (221)
T ss_pred CCCCCHHHHHHHHHHHHhc-CCCEEEEECCCC-CHHHHHHHHHH
Confidence 5557888888877777533 368999987432 33355555544
No 308
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=68.53 E-value=32 Score=28.41 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=26.3
Q ss_pred CCCEECCCcEECCCcEECCCcEECCCCEEeeeEECCC-CEECCCCEEEeeEECCCCEE
Q 015259 300 PSAKIHPTAKIGPNVSISANARIGAGVRLISCIILDG-VEIMENAVVTNAIVGWKSSI 356 (410)
Q Consensus 300 ~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~i~~~-~~i~~~~~i~~~~i~~~~~i 356 (410)
+++.|+.++.+.++.......+|. + .+.+.+..++ +.|+...+|...+..+...|
T Consensus 22 ~~tli~~g~~f~G~l~f~~~l~Id-G-~~~G~v~s~~~iiv~~~g~V~gei~a~~~iv 77 (146)
T COG1664 22 PETLIGAGTTFKGELVFEGPLRID-G-TFEGDVHSDGGIVVGESGRVEGEIEAEHLIV 77 (146)
T ss_pred CCeEEecCCEEEEEEEecceEEEe-E-EEEEEEEeCCCEEECCccEEEEEEEeCEEEE
Confidence 344444444444444444444552 2 4444444444 55555556655444444444
No 309
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=62.14 E-value=46 Score=29.20 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=48.9
Q ss_pred cchhhhHhhccc-----EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCC
Q 015259 42 PMVHHPISACKR-----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCD 116 (410)
Q Consensus 42 pli~~~l~~l~~-----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D 116 (410)
+.|..+|+.+.+ ++|+.....+...+.+..... ...+.++. .+..|-..++..+.+... .+.++++.+|
T Consensus 14 ~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~--~~~~~v~~-~~~~g~~~a~n~g~~~a~---~d~v~~lD~D 87 (235)
T cd06434 14 DVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVK--YGGIFVIT-VPHPGKRRALAEGIRHVT---TDIVVLLDSD 87 (235)
T ss_pred HHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhcc--CCcEEEEe-cCCCChHHHHHHHHHHhC---CCEEEEECCC
Confidence 355556665544 555544434333443322111 12344443 344577777777766654 4788999999
Q ss_pred cccCCC-hHHHHHHHH
Q 015259 117 VCCSFP-LPEMLDAHR 131 (410)
Q Consensus 117 ~i~~~~-l~~~l~~~~ 131 (410)
.....+ +..+++.+.
T Consensus 88 ~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 88 TVWPPNALPEMLKPFE 103 (235)
T ss_pred ceeChhHHHHHHHhcc
Confidence 997655 778877665
No 310
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=62.13 E-value=41 Score=33.03 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=63.2
Q ss_pred cccccCCc-c-chhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeC-CCCCCcHHHHHHhHHHhc
Q 015259 34 PLFPLGGQ-P-MVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLRE-DKPHGSAGALYNFRDLIM 103 (410)
Q Consensus 34 ~llpi~g~-p-li~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~-~~~~g~~~~l~~~~~~l~ 103 (410)
-++|.-|. + .++.+++.+.+ ++++.....+...+.+++...+++..+..... ....|-+.++..+.....
T Consensus 58 viiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~~ 137 (439)
T COG1215 58 VIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRAK 137 (439)
T ss_pred EEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhcC
Confidence 34555666 5 78889988887 66665544455555555543333223343322 455666788888877765
Q ss_pred ccCCCcEEEEcCCcccCCC-hHHHHHHHHhcC
Q 015259 104 EDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (410)
Q Consensus 104 ~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~ 134 (410)
.+-++++.+|++...| +.+++..+...+
T Consensus 138 ---~d~V~~~DaD~~~~~d~l~~~~~~f~~~~ 166 (439)
T COG1215 138 ---GDVVVILDADTVPEPDALRELVSPFEDPP 166 (439)
T ss_pred ---CCEEEEEcCCCCCChhHHHHHHhhhcCCC
Confidence 4678899999998666 788877765443
No 311
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=61.81 E-value=58 Score=31.60 Aligned_cols=104 Identities=11% Similarity=0.020 Sum_probs=56.2
Q ss_pred ccccCCc-cchhhhHhhccc--------EEEecccchHHHHHHHHhhcccCC--ccEEEeeCC----CCCCcHHHHHHhH
Q 015259 35 LFPLGGQ-PMVHHPISACKR--------IYLVGFYEEREFALYVSSISNELR--IPVRYLRED----KPHGSAGALYNFR 99 (410)
Q Consensus 35 llpi~g~-pli~~~l~~l~~--------i~vv~~~~~~~i~~~~~~~~~~~~--~~i~~i~~~----~~~g~~~~l~~~~ 99 (410)
.+|.-|. +.|...|+.+.+ |+|+-....+.-.+.+++...+.+ .+++++... ...|-+.++.++.
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~ 124 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGI 124 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHH
Confidence 4444454 667777777643 555533323222233332211222 145555421 1235555777766
Q ss_pred HHhcccC--CCcEEEEcCCcccCCC-hHHHHHHHHhcCCceE
Q 015259 100 DLIMEDN--PSHIFLLNCDVCCSFP-LPEMLDAHRNYGGMGT 138 (410)
Q Consensus 100 ~~l~~~~--~~~~lvl~~D~i~~~~-l~~~l~~~~~~~~~~~ 138 (410)
+...+.. .+.++++++|...+.+ +..+++...+.+.+++
T Consensus 125 ~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 125 AAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred HHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 6553211 3678899999987655 7888887766555433
No 312
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=61.03 E-value=1.1e+02 Score=26.64 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=48.5
Q ss_pred cchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCc
Q 015259 42 PMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDV 117 (410)
Q Consensus 42 pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~ 117 (410)
..|..+|+.+.+ ++|+-....+......+. ...++.++......|-+.+...+.+.......+.++++.+|.
T Consensus 11 ~~l~~~l~sl~~q~~~iivvDn~s~~~~~~~~~~----~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~D~ 86 (237)
T cd02526 11 SKLKELLAALAEQVDKVVVVDNSSGNDIELRLRL----NSEKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQDS 86 (237)
T ss_pred HHHHHHHHHHhccCCEEEEEeCCCCccHHHHhhc----cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECCCC
Confidence 556666666555 555532222222222211 123566766666778888888877766421247889999999
Q ss_pred ccCCC-hHHHH
Q 015259 118 CCSFP-LPEML 127 (410)
Q Consensus 118 i~~~~-l~~~l 127 (410)
..+.+ +..++
T Consensus 87 ~~~~~~l~~l~ 97 (237)
T cd02526 87 VPPPDMVEKLL 97 (237)
T ss_pred CcCHhHHHHHH
Confidence 87655 66664
No 313
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=59.42 E-value=90 Score=29.68 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=36.2
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCC-ChHHHHHHHH
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSF-PLPEMLDAHR 131 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~-~l~~~l~~~~ 131 (410)
++.++......|.+.++..+..... .+.++++.+|...+. ++..+++...
T Consensus 138 ~i~vi~~~~N~G~~~A~~~Gi~~a~---gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 138 DIRLLSLLRNKGKGGAVRIGMLASR---GKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred cEEEEEcCCCCChHHHHHHHHHHcc---CCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5777766677788999988877654 467889999987654 4666666543
No 314
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=58.57 E-value=63 Score=35.03 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=56.1
Q ss_pred ccccCCcc--chhhhHhhccc---------EEEecccchHHHHHHHHhhcccCCccEEEeeC-CCCCCcHHHHHHhHHHh
Q 015259 35 LFPLGGQP--MVHHPISACKR---------IYLVGFYEEREFALYVSSISNELRIPVRYLRE-DKPHGSAGALYNFRDLI 102 (410)
Q Consensus 35 llpi~g~p--li~~~l~~l~~---------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~-~~~~g~~~~l~~~~~~l 102 (410)
++|.-|.+ ++..++..+.+ |+|+-....+...+..++ . .+.++.. .+..+-++++-.+.+..
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~----~--~v~yI~R~~n~~gKAGnLN~aL~~a 338 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE----V--GVKYIARPTHEHAKAGNINNALKYA 338 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH----C--CcEEEEeCCCCcchHHHHHHHHHhC
Confidence 55666775 56666665432 666644444555555543 2 3566543 33445677888777766
Q ss_pred cccCCCcEEEEcCCcccCCC-hHHHHHHHHhc
Q 015259 103 MEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 103 ~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~ 133 (410)
+ .+.++++.+|.+...+ ++.++..+.+.
T Consensus 339 ~---GEyIavlDAD~ip~pdfL~~~V~~f~~d 367 (852)
T PRK11498 339 K---GEFVAIFDCDHVPTRSFLQMTMGWFLKD 367 (852)
T ss_pred C---CCEEEEECCCCCCChHHHHHHHHHHHhC
Confidence 4 4788999999997655 66666655443
No 315
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=57.34 E-value=40 Score=29.73 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=33.1
Q ss_pred CccEEEeeCCCCCC-cHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHH
Q 015259 77 RIPVRYLREDKPHG-SAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAH 130 (410)
Q Consensus 77 ~~~i~~i~~~~~~g-~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~ 130 (410)
+.++.++...+..| .++++..+.+..+ .+.++++.+|.....+ +..+....
T Consensus 60 ~~~i~~~~~~~~~G~k~~a~n~g~~~a~---~~~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 60 GVNIKHVRRADRTGYKAGALAEGMKVAK---GEYVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred CCceEEEECCCCCCCchHHHHHHHHhCC---CCEEEEEcCCCCCChHHHHHhhhhh
Confidence 34566665444455 4667777776664 4788999999987655 66644433
No 316
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=56.18 E-value=79 Score=27.46 Aligned_cols=44 Identities=14% Similarity=-0.005 Sum_probs=29.2
Q ss_pred CCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhcC
Q 015259 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNYG 134 (410)
Q Consensus 88 ~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~~ 134 (410)
..|.+.+...+.+... .+.++++.+|.+...+ +..++....+..
T Consensus 69 ~~G~~~a~N~g~~~a~---gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 69 PKGVGYAKNQAIAQSS---GRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred CccHHHHHHHHHHhcC---CCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 4566666666665543 4788899999886544 777777665443
No 317
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=55.83 E-value=56 Score=30.49 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=59.2
Q ss_pred ccchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEE
Q 015259 41 QPMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLL 113 (410)
Q Consensus 41 ~pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl 113 (410)
...+...|..+.+ ++++-....+...+.++.. ....+.++...+..|-+++...+.........+.++++
T Consensus 15 ~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~---~~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~l~L 91 (305)
T COG1216 15 GEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKAR---FFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYVLLL 91 (305)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhh---cCCcEEEEEcCCCccchhhhhHHHHHHhcCCCcEEEEE
Confidence 3455556665555 3334333333333444431 12367888878888888888876665542221269999
Q ss_pred cCCcccCCC-hHHHHHHHHhcCCceEEE
Q 015259 114 NCDVCCSFP-LPEMLDAHRNYGGMGTIL 140 (410)
Q Consensus 114 ~~D~i~~~~-l~~~l~~~~~~~~~~~l~ 140 (410)
+-|++.+.+ +.++++.+.+.+..+.+.
T Consensus 92 N~D~~~~~~~l~~ll~~~~~~~~~~~~~ 119 (305)
T COG1216 92 NPDTVVEPDLLEELLKAAEEDPAAGVVG 119 (305)
T ss_pred cCCeeeChhHHHHHHHHHHhCCCCeEee
Confidence 999887665 899999888766554333
No 318
>PRK10063 putative glycosyl transferase; Provisional
Probab=54.02 E-value=1.7e+02 Score=26.42 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=31.6
Q ss_pred cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHH
Q 015259 79 PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAH 130 (410)
Q Consensus 79 ~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~ 130 (410)
++.++.+. ..|.++++..+.+... .+.++++++|-+...+..+++...
T Consensus 59 ~i~~i~~~-~~G~~~A~N~Gi~~a~---g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 59 NLRFVSEP-DNGIYDAMNKGIAMAQ---GRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred CEEEEECC-CCCHHHHHHHHHHHcC---CCEEEEEeCCcccCcCHHHHHHHH
Confidence 36666544 4488888888887664 478889998777654543444443
No 319
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=50.48 E-value=83 Score=27.14 Aligned_cols=86 Identities=14% Similarity=0.109 Sum_probs=46.5
Q ss_pred ccCCc-cchhhhHhhccc-------EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCC
Q 015259 37 PLGGQ-PMVHHPISACKR-------IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPS 108 (410)
Q Consensus 37 pi~g~-pli~~~l~~l~~-------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~ 108 (410)
|.-|. +.|...|+.+.+ ++|+-....+...+.+++ ..+.++.. ..|.+.++..+.+... .+
T Consensus 6 ~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~------~~~~~~~~--~~g~~~a~n~g~~~a~---~~ 74 (221)
T cd02522 6 PTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS------AGVVVISS--PKGRARQMNAGAAAAR---GD 74 (221)
T ss_pred EccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc------CCeEEEeC--CcCHHHHHHHHHHhcc---CC
Confidence 34343 345555655544 555533322333333332 23444433 3456666766666654 47
Q ss_pred cEEEEcCCcccCCC-hHHHHHHHHhc
Q 015259 109 HIFLLNCDVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 109 ~~lvl~~D~i~~~~-l~~~l~~~~~~ 133 (410)
.++++..|.....+ +..++....+.
T Consensus 75 ~i~~~D~D~~~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 75 WLLFLHADTRLPPDWDAAIIETLRAD 100 (221)
T ss_pred EEEEEcCCCCCChhHHHHHHHHhhcC
Confidence 88999999887554 66665554433
No 320
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=50.04 E-value=1.1e+02 Score=28.19 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=27.5
Q ss_pred CCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHH
Q 015259 88 PHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLD 128 (410)
Q Consensus 88 ~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~ 128 (410)
..+.+.+.-.+.+... .+.++++.+|.+...+ +..+++
T Consensus 73 ~f~~a~arN~g~~~A~---~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 73 PFSRAKARNIGAKYAR---GDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred CcCHHHHHHHHHHHcC---CCEEEEEcCCeeeCHHHHHHHHH
Confidence 4577777766666664 4678899999997655 677777
No 321
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=49.93 E-value=1.2e+02 Score=25.74 Aligned_cols=87 Identities=16% Similarity=0.150 Sum_probs=47.3
Q ss_pred cchhhhHhhccc------EEEecccchHHHHHHHHhhcccCCccEEEeeC---CCCCCcHHHHHHhHHHhccc-------
Q 015259 42 PMVHHPISACKR------IYLVGFYEEREFALYVSSISNELRIPVRYLRE---DKPHGSAGALYNFRDLIMED------- 105 (410)
Q Consensus 42 pli~~~l~~l~~------i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~---~~~~g~~~~l~~~~~~l~~~------- 105 (410)
..|..+|+.+.+ |+|+-....+...+.++ . .....++.++.. ....|-+.++..+.+.....
T Consensus 10 ~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~-~-~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g~~ 87 (191)
T cd06436 10 AVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVR-L-AITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGAD 87 (191)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHh-h-eecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccccC
Confidence 455556665544 55554333333333333 1 111234665543 23457788888877765311
Q ss_pred -CCCcEEEEcCCcccCCC-hHHHHHHH
Q 015259 106 -NPSHIFLLNCDVCCSFP-LPEMLDAH 130 (410)
Q Consensus 106 -~~~~~lvl~~D~i~~~~-l~~~l~~~ 130 (410)
..+.++++.+|...+.+ +..+....
T Consensus 88 ~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 88 PERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred CCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 02467899999987655 66654443
No 322
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=44.55 E-value=1.8e+02 Score=25.55 Aligned_cols=81 Identities=11% Similarity=0.012 Sum_probs=45.5
Q ss_pred cchhhhHhhccc----EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCc
Q 015259 42 PMVHHPISACKR----IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDV 117 (410)
Q Consensus 42 pli~~~l~~l~~----i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~ 117 (410)
..|...|+.+.. |+|+-....+...+.++. ++. .++.. ...|-+.+...+.+... .+.++++.+|.
T Consensus 13 ~~l~~~l~sl~~~~~eiivvD~gStD~t~~i~~~----~~~--~v~~~-~~~g~~~~~n~~~~~a~---~d~vl~lDaD~ 82 (229)
T cd02511 13 RNIERCLESVKWAVDEIIVVDSGSTDRTVEIAKE----YGA--KVYQR-WWDGFGAQRNFALELAT---NDWVLSLDADE 82 (229)
T ss_pred HHHHHHHHHHhcccCEEEEEeCCCCccHHHHHHH----cCC--EEEEC-CCCChHHHHHHHHHhCC---CCEEEEEeCCc
Confidence 445556655554 666643333333333332 333 33333 55567777766766654 46889999998
Q ss_pred ccCCC-hHHHHHHHHh
Q 015259 118 CCSFP-LPEMLDAHRN 132 (410)
Q Consensus 118 i~~~~-l~~~l~~~~~ 132 (410)
....+ +..+++...+
T Consensus 83 ~~~~~~~~~l~~~~~~ 98 (229)
T cd02511 83 RLTPELADEILALLAT 98 (229)
T ss_pred CcCHHHHHHHHHHHhC
Confidence 87655 5555554443
No 323
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=43.51 E-value=9.3 Score=33.86 Aligned_cols=106 Identities=20% Similarity=0.172 Sum_probs=48.3
Q ss_pred eEEEEEecCCCCC---CccccCCCCCCccccccCCccchhhhHhhccc--EEEecccchHHHHHHHHhhcccCCccEEEe
Q 015259 9 VVAVIMVGGPTKG---TRFRPLSLNIPKPLFPLGGQPMVHHPISACKR--IYLVGFYEEREFALYVSSISNELRIPVRYL 83 (410)
Q Consensus 9 ~~aiIlaaG~~~g---~Rl~~lt~~~pK~llpi~g~pli~~~l~~l~~--i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i 83 (410)
|.+||+--. .+ |||.+. ++-.--.=.-..|+..++..+.. ++|++... .+..+. ...+ .+.++
T Consensus 1 m~~VIPvK~--~~~aKSRLs~~---L~~~eR~~La~aMl~Dvl~al~~v~v~vVs~d~--~v~~~a---~~~~--g~~vl 68 (217)
T PF01983_consen 1 MRAVIPVKP--LARAKSRLSPV---LSPEEREALALAMLRDVLAALRAVDVVVVSRDP--EVAALA---RARL--GAEVL 68 (217)
T ss_dssp -EEEEE-----TT-TTGGGTTT---S-HHHHHHHHHHHHHHHHHHHHH-SEEEEES----S-TTTT---T-----SSEEE
T ss_pred CeEEEEcCC--CCccccccCcc---CCHHHHHHHHHHHHHHHHHHHHhcCeEEeccch--hhhhhh---hhcc--CCeEe
Confidence 677888765 44 677652 11110001122577888888877 77776532 111110 0122 35555
Q ss_pred eCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc--CCChHHHHHHH
Q 015259 84 REDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC--SFPLPEMLDAH 130 (410)
Q Consensus 84 ~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~--~~~l~~~l~~~ 130 (410)
.+. ..|.-.++..+..... .+.++++.+|++. ..++..++...
T Consensus 69 ~d~-~~gLN~Al~~a~~~~~---~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 69 PDP-GRGLNAALNAALAAAG---DDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp E----S-HHHHHHHHHH-H-----S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred cCC-CCCHHHHHHHHHhccC---CCceEEeecCCccCCHHHHHHHHhcc
Confidence 544 4566677777733232 4789999999984 45677777653
No 324
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=38.82 E-value=2.1e+02 Score=30.57 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=35.2
Q ss_pred cEEEeeCC-CCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCC-hHHHHHHHHhc
Q 015259 79 PVRYLRED-KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFP-LPEMLDAHRNY 133 (410)
Q Consensus 79 ~i~~i~~~-~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~-l~~~l~~~~~~ 133 (410)
.+.++... ...+-++++..+.+..+ .+.++++.+|.+...+ +..++..+.+.
T Consensus 203 ~v~yi~r~~n~~~KAgnLN~al~~a~---gd~Il~lDAD~v~~pd~L~~~v~~f~~d 256 (713)
T TIGR03030 203 GVNYITRPRNVHAKAGNINNALKHTD---GELILIFDADHVPTRDFLQRTVGWFVED 256 (713)
T ss_pred CcEEEECCCCCCCChHHHHHHHHhcC---CCEEEEECCCCCcChhHHHHHHHHHHhC
Confidence 45665433 33345778888777665 4788999999997666 67777766443
No 325
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=32.90 E-value=2.5e+02 Score=26.12 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=53.8
Q ss_pred cchhhhHhhccc-----------EEEecccchHHHHHHHHhhcccCC-ccEEEeeCCCCCCcHHHHHHhHHHhcccCCCc
Q 015259 42 PMVHHPISACKR-----------IYLVGFYEEREFALYVSSISNELR-IPVRYLREDKPHGSAGALYNFRDLIMEDNPSH 109 (410)
Q Consensus 42 pli~~~l~~l~~-----------i~vv~~~~~~~i~~~~~~~~~~~~-~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~ 109 (410)
-|++-.++.|++ ++||-....+.-.++.-++..+++ ..+.++......|-+++++.+.-... .+.
T Consensus 84 ~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~r---G~~ 160 (323)
T KOG2977|consen 84 AMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSR---GQK 160 (323)
T ss_pred HHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhcc---Cce
Confidence 378888888876 677755444433333333333445 36788888888888999987655443 367
Q ss_pred EEEEcCCcccCC-ChHHHHH
Q 015259 110 IFLLNCDVCCSF-PLPEMLD 128 (410)
Q Consensus 110 ~lvl~~D~i~~~-~l~~~l~ 128 (410)
.++..+|-.+.. |+..+..
T Consensus 161 ilfadAdGaTkf~d~ekLe~ 180 (323)
T KOG2977|consen 161 ILFADADGATKFADLEKLEK 180 (323)
T ss_pred EEEEcCCCCccCCCHHHHHH
Confidence 788899987643 4544443
No 326
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=27.71 E-value=3.9e+02 Score=22.83 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=18.8
Q ss_pred CccccceeeeEEEEcHHHHHHhhhc
Q 015259 173 TFVSDLINCGVYVFTPDIFNAIQGV 197 (410)
Q Consensus 173 ~~~~~l~~~Giy~~~~~~~~~l~~~ 197 (410)
.....+...+.|+++.++++.|-..
T Consensus 142 ~~yP~y~~G~~yvls~~~v~~i~~~ 166 (195)
T PF01762_consen 142 DYYPPYCSGGGYVLSSDVVKRIYKA 166 (195)
T ss_pred ccCCCcCCCCeEEecHHHHHHHHHH
Confidence 3345567789999999998877653
No 327
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=26.44 E-value=4.2e+02 Score=22.83 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=16.8
Q ss_pred ceEEEEEecCCCCCCccccCCCCCCcc
Q 015259 8 KVVAVIMVGGPTKGTRFRPLSLNIPKP 34 (410)
Q Consensus 8 ~~~aiIlaaG~~~g~Rl~~lt~~~pK~ 34 (410)
++-.|.+|++ ....+.|+|....+-
T Consensus 48 ~vGlv~fag~--~a~v~~plT~D~~~~ 72 (187)
T cd01452 48 NVGLMTMAGN--SPEVLVTLTNDQGKI 72 (187)
T ss_pred cEEEEEecCC--ceEEEECCCCCHHHH
Confidence 4455666666 677888998875553
No 328
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=26.18 E-value=3.3e+02 Score=25.48 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=33.2
Q ss_pred CCCCcHHHHHHhHHHhcccCCCcEEEEcCCcc-cCC-ChHHHHHHHHh-cCCceEEE
Q 015259 87 KPHGSAGALYNFRDLIMEDNPSHIFLLNCDVC-CSF-PLPEMLDAHRN-YGGMGTIL 140 (410)
Q Consensus 87 ~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i-~~~-~l~~~l~~~~~-~~~~~~l~ 140 (410)
...|-+.++..+..... .+.++++.+|.. .+. .+..+++.... .+.+++..
T Consensus 99 ~n~Gkg~A~~~g~~~a~---gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 99 PRPGKGEALWRSLAATT---GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred cCCCHHHHHHHHHHhcC---CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 34577777877766543 467889999986 544 47888876653 34454444
No 329
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=25.73 E-value=2.7e+02 Score=24.53 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=41.3
Q ss_pred EecccchHHHHHHHHhhcccCCc---cEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCccc-CCC-hHHHHHHH
Q 015259 56 LVGFYEEREFALYVSSISNELRI---PVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCC-SFP-LPEMLDAH 130 (410)
Q Consensus 56 vv~~~~~~~i~~~~~~~~~~~~~---~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~-~~~-l~~~l~~~ 130 (410)
|++..+++.+.+.++...+-... .+.+.......+.+.++-.+.+.-. .+.++.+.-|+.+ +.+ +.++++.+
T Consensus 4 I~c~n~~~~~~~~~~~i~~~~~~~~~~i~i~~~~~~~s~~~~yN~a~~~a~---~~ylvflHqDv~i~~~~~l~~il~~~ 80 (217)
T PF13712_consen 4 IICVNDEELYEECLRSIKRLIGPPGELIEIDNVRNAKSMAAAYNEAMEKAK---AKYLVFLHQDVFIINENWLEDILEIF 80 (217)
T ss_dssp EEEES-HHHHHHHHHHHHHTT--TEEEEEEE-SSS-S-TTTHHHHHGGG-----SSEEEEEETTEE-SSHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHhhCCCCceEEEEeccCCCcCHHHHHHHHHHhCC---CCEEEEEeCCeEEcchhHHHHHHHHH
Confidence 44444555566655554322122 3445444444555566666655543 4677888999876 445 67777777
Q ss_pred HhcCCceEEE
Q 015259 131 RNYGGMGTIL 140 (410)
Q Consensus 131 ~~~~~~~~l~ 140 (410)
++......+.
T Consensus 81 ~~~~~~G~iG 90 (217)
T PF13712_consen 81 EEDPNIGMIG 90 (217)
T ss_dssp HH-TTEEEEE
T ss_pred hhCCCccEEE
Confidence 5544433333
No 330
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=24.73 E-value=3.5e+02 Score=27.47 Aligned_cols=96 Identities=10% Similarity=0.113 Sum_probs=50.4
Q ss_pred ccccCCc-cchhhhHhhc-cc-------EEEecccchHHHHHHHHhhcccCC-ccEEEeeCCCCCCcHHHHHHhHHHhc-
Q 015259 35 LFPLGGQ-PMVHHPISAC-KR-------IYLVGFYEEREFALYVSSISNELR-IPVRYLREDKPHGSAGALYNFRDLIM- 103 (410)
Q Consensus 35 llpi~g~-pli~~~l~~l-~~-------i~vv~~~~~~~i~~~~~~~~~~~~-~~i~~i~~~~~~g~~~~l~~~~~~l~- 103 (410)
++|-.|. ..|...|+.+ .+ |+|+.....+.-.+.++....+++ .++.......+.+-+++|-.+.+.+.
T Consensus 71 lIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~ 150 (504)
T PRK14716 71 FVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFA 150 (504)
T ss_pred EEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 5566666 6777777753 22 555543333222223332222332 22233333444566778877766541
Q ss_pred --ccC---CCcEEEEcCCcccCCChHHHHHHH
Q 015259 104 --EDN---PSHIFLLNCDVCCSFPLPEMLDAH 130 (410)
Q Consensus 104 --~~~---~~~~lvl~~D~i~~~~l~~~l~~~ 130 (410)
... .+.++++.+|.+.+.+.-..+..+
T Consensus 151 ~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~ 182 (504)
T PRK14716 151 FERERGIRFAIIVLHDAEDVIHPLELRLYNYL 182 (504)
T ss_pred hhhhcCCCcCEEEEEcCCCCcCccHHHHHHhh
Confidence 111 267889999998876644444444
No 331
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=24.20 E-value=5.5e+02 Score=23.35 Aligned_cols=79 Identities=15% Similarity=0.007 Sum_probs=43.1
Q ss_pred EEEecccchHHHHHHHHhhcccCCccEEEeeCCCCCCcHHHHHHhHHHhcccCCCcEEEEcCCcccCCChHHHHHHHHhc
Q 015259 54 IYLVGFYEEREFALYVSSISNELRIPVRYLREDKPHGSAGALYNFRDLIMEDNPSHIFLLNCDVCCSFPLPEMLDAHRNY 133 (410)
Q Consensus 54 i~vv~~~~~~~i~~~~~~~~~~~~~~i~~i~~~~~~g~~~~l~~~~~~l~~~~~~~~lvl~~D~i~~~~l~~~l~~~~~~ 133 (410)
|++++......+.+++.....+.+..+... +..+.+......+. .++++++-+-.-...++.++++..+++
T Consensus 131 I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~------~d~~~~~~~~~~~~---~~Dv~I~iS~sg~~~~~~~~~~~ak~~ 201 (278)
T PRK11557 131 IILTGIGASGLVAQNFAWKLMKIGINAVAE------RDMHALLATVQALS---PDDLLLAISYSGERRELNLAADEALRV 201 (278)
T ss_pred EEEEecChhHHHHHHHHHHHhhCCCeEEEc------CChHHHHHHHHhCC---CCCEEEEEcCCCCCHHHHHHHHHHHHc
Confidence 888888766666666655333444444332 12233333334454 466766554333344566777777777
Q ss_pred CCceEEEE
Q 015259 134 GGMGTILV 141 (410)
Q Consensus 134 ~~~~~l~~ 141 (410)
++.+.+++
T Consensus 202 ga~iI~IT 209 (278)
T PRK11557 202 GAKVLAIT 209 (278)
T ss_pred CCCEEEEc
Confidence 77744443
No 332
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=23.36 E-value=3.4e+02 Score=27.47 Aligned_cols=103 Identities=11% Similarity=0.190 Sum_probs=54.2
Q ss_pred ccccCCc--cchhhhHhhccc-----------EEEe-cc-cch---HHHHHHHHhhcccCC-ccEEEeeCC-CCCCcHHH
Q 015259 35 LFPLGGQ--PMVHHPISACKR-----------IYLV-GF-YEE---REFALYVSSISNELR-IPVRYLRED-KPHGSAGA 94 (410)
Q Consensus 35 llpi~g~--pli~~~l~~l~~-----------i~vv-~~-~~~---~~i~~~~~~~~~~~~-~~i~~i~~~-~~~g~~~~ 94 (410)
.+|+.|+ ..+.+-|+.+.+ ++|+ .. .+. ..+++.+.+...+++ .++.++... .....+.+
T Consensus 252 IvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~ 331 (499)
T PF05679_consen 252 IVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTGEFSRGAA 331 (499)
T ss_pred EEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCCCccHHHH
Confidence 4677777 555555555554 3333 22 112 234456666555553 477777665 66677778
Q ss_pred HHHhHHHhcccCCCcEEEEcC--CcccCCChHHHHHHHHhcCCceEEEEEec
Q 015259 95 LYNFRDLIMEDNPSHIFLLNC--DVCCSFPLPEMLDAHRNYGGMGTILVIKV 144 (410)
Q Consensus 95 l~~~~~~l~~~~~~~~lvl~~--D~i~~~~l~~~l~~~~~~~~~~~l~~~~~ 144 (410)
|..+.+.+. .+-|++-| |+.++ .++|+.-+..--...-++++.
T Consensus 332 Ld~g~~~~~----~d~L~f~~Dvd~~f~---~~fL~rcR~nti~g~qvy~PI 376 (499)
T PF05679_consen 332 LDVGAKKFP----PDSLLFFCDVDMVFT---SDFLNRCRMNTIPGKQVYFPI 376 (499)
T ss_pred HHhhcccCC----CCcEEEEEeCCcccC---HHHHHHHHHhhhcCcEEEEee
Confidence 887777664 33444545 44454 345554443322233445543
Done!