Your job contains 1 sequence.
>015260
MSEAKQELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLV
EENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVES
EIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETV
QEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAM
ESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLW
HQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTC
SLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSLIHLH
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015260
(410 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2009021 - symbol:AT1G34150 species:3702 "Arabi... 1207 9.2e-123 1
UNIPROTKB|F1P3X5 - symbol:PUS3 "tRNA pseudouridine syntha... 706 4.7e-72 2
UNIPROTKB|F1N5P3 - symbol:PUS3 "tRNA pseudouridine syntha... 683 2.6e-69 2
UNIPROTKB|Q3SX07 - symbol:PUS3 "tRNA pseudouridine(38/39)... 683 2.6e-69 2
RGD|1310757 - symbol:Pus3 "pseudouridylate synthase 3" sp... 662 4.7e-68 2
MGI|MGI:1914299 - symbol:Pus3 "pseudouridine synthase 3" ... 652 7.7e-68 2
UNIPROTKB|E2RGS6 - symbol:PUS3 "tRNA pseudouridine syntha... 666 9.8e-68 2
UNIPROTKB|Q9BZE2 - symbol:PUS3 "tRNA pseudouridine(38/39)... 666 9.8e-68 2
UNIPROTKB|F1S759 - symbol:LOC100739830 "tRNA pseudouridin... 671 5.8e-66 1
UNIPROTKB|F1RVF1 - symbol:LOC100739830 "tRNA pseudouridin... 662 5.2e-65 1
ZFIN|ZDB-GENE-030131-9433 - symbol:pus3 "pseudouridylate ... 632 7.9e-62 1
DICTYBASE|DDB_G0288909 - symbol:pus3 "tRNA pseudouridylat... 446 2.0e-61 2
CGD|CAL0000624 - symbol:orf19.6297 species:5476 "Candida ... 575 8.6e-56 1
POMBASE|SPAC25B8.05 - symbol:SPAC25B8.05 "tRNA-pseudourid... 431 1.8e-54 2
SGD|S000001895 - symbol:DEG1 "tRNA:pseudouridine synthase... 548 6.3e-53 1
FB|FBgn0034703 - symbol:CG3045 species:7227 "Drosophila m... 545 1.3e-52 1
ASPGD|ASPL0000040109 - symbol:AN3170 species:162425 "Emer... 214 3.1e-44 4
WB|WBGene00006473 - symbol:tag-124 species:6239 "Caenorha... 448 2.5e-42 1
UNIPROTKB|G4MKS9 - symbol:MGG_16154 "tRNA-pseudouridine s... 184 1.1e-40 4
UNIPROTKB|E9PRI9 - symbol:PUS3 "tRNA pseudouridine syntha... 240 5.6e-20 1
TAIR|locus:2077552 - symbol:AT3G06950 species:3702 "Arabi... 219 3.5e-16 1
UNIPROTKB|F1NZ90 - symbol:PUS1 "tRNA pseudouridine syntha... 204 8.0e-14 1
FB|FBgn0038811 - symbol:CG4159 species:7227 "Drosophila m... 199 3.9e-13 1
ASPGD|ASPL0000001573 - symbol:AN6165 species:162425 "Emer... 136 2.8e-12 2
RGD|1311871 - symbol:Pus1 "pseudouridylate synthase 1" sp... 191 2.8e-12 1
UNIPROTKB|Q4KM92 - symbol:Pus1 "tRNA pseudouridine syntha... 191 2.8e-12 1
MGI|MGI:1929237 - symbol:Pus1 "pseudouridine synthase 1" ... 190 3.6e-12 1
UNIPROTKB|E1BDL3 - symbol:PUS1 "tRNA pseudouridine syntha... 190 3.9e-12 1
UNIPROTKB|F1RFR2 - symbol:PUS1 "tRNA pseudouridine syntha... 187 8.5e-12 1
TAIR|locus:2199726 - symbol:AT1G76120 species:3702 "Arabi... 113 8.6e-12 3
ZFIN|ZDB-GENE-041212-26 - symbol:pus1 "pseudouridine synt... 185 1.3e-11 1
TAIR|locus:2012898 - symbol:AT1G20370 species:3702 "Arabi... 112 1.4e-11 3
UNIPROTKB|J9NVH5 - symbol:PUS1 "tRNA pseudouridine syntha... 183 1.9e-11 1
UNIPROTKB|G4N3B4 - symbol:MGG_07663 "tRNA pseudouridine s... 138 2.1e-11 2
UNIPROTKB|E2QW32 - symbol:PUS1 "tRNA pseudouridine syntha... 183 2.5e-11 1
UNIPROTKB|E1BUI0 - symbol:PUSL1 "tRNA pseudouridine synth... 149 6.5e-11 2
UNIPROTKB|G8JLB3 - symbol:PUS1 "tRNA pseudouridine syntha... 178 6.6e-11 1
UNIPROTKB|Q9Y606 - symbol:PUS1 "tRNA pseudouridine syntha... 178 8.5e-11 1
UNIPROTKB|P65846 - symbol:truA "tRNA pseudouridine syntha... 111 1.7e-10 2
SGD|S000003031 - symbol:PUS2 "Mitochondrial tRNA:pseudour... 113 5.2e-10 3
DICTYBASE|DDB_G0281619 - symbol:DDB_G0281619 "tRNA pseudo... 137 5.6e-10 2
POMBASE|SPCC126.03 - symbol:pus1 "tRNA pseudouridine synt... 111 8.6e-10 3
DICTYBASE|DDB_G0286567 - symbol:DDB_G0286567 species:4468... 149 1.0e-09 2
SGD|S000006133 - symbol:PUS1 "tRNA:pseudouridine synthase... 101 1.2e-09 3
POMBASE|SPBC887.11 - symbol:pus2 "tRNA pseudouridine synt... 107 1.9e-09 3
UNIPROTKB|Q9KTA4 - symbol:truA "tRNA pseudouridine syntha... 124 7.2e-09 2
TIGR_CMR|VC_0999 - symbol:VC_0999 "tRNA pseudouridine syn... 124 7.2e-09 2
UNIPROTKB|F5H1S9 - symbol:PUS1 "tRNA pseudouridine syntha... 156 1.9e-08 1
TIGR_CMR|GSU_2877 - symbol:GSU_2877 "tRNA pseudouridine s... 137 4.1e-08 2
DICTYBASE|DDB_G0283061 - symbol:DDB_G0283061 "tRNA pseudo... 99 1.1e-07 2
TIGR_CMR|CBU_0892 - symbol:CBU_0892 "tRNA pseudouridine s... 121 1.3e-07 2
WB|WBGene00004248 - symbol:pus-1 species:6239 "Caenorhabd... 149 1.5e-07 1
TIGR_CMR|NSE_0020 - symbol:NSE_0020 "tRNA pseudouridine s... 137 8.0e-07 1
MGI|MGI:3047787 - symbol:Pusl1 "pseudouridylate synthase-... 124 8.3e-07 2
DICTYBASE|DDB_G0290987 - symbol:pus1 "tRNA pseudouridylat... 142 1.6e-06 1
UNIPROTKB|E9PNY6 - symbol:PUS3 "tRNA pseudouridine(38/39)... 115 3.4e-06 1
TIGR_CMR|DET_0504 - symbol:DET_0504 "tRNA pseudouridine s... 131 4.4e-06 1
UNIPROTKB|F5GY32 - symbol:PUS1 "tRNA pseudouridine syntha... 109 5.5e-06 2
UNIPROTKB|A6QP68 - symbol:PUSL1 "tRNA pseudouridine synth... 120 8.5e-06 2
POMBASE|SPCC16C4.06c - symbol:SPCC16C4.06c "tRNA pseudour... 81 8.7e-06 3
TIGR_CMR|SPO_3143 - symbol:SPO_3143 "tRNA pseudouridine s... 122 5.7e-05 1
UNIPROTKB|Q8N0Z8 - symbol:PUSL1 "tRNA pseudouridine synth... 110 6.5e-05 2
UNIPROTKB|J3KTG4 - symbol:PUSL1 "tRNA pseudouridine synth... 102 8.8e-05 1
UNIPROTKB|F1RJE9 - symbol:PUSL1 "tRNA pseudouridine synth... 107 0.00029 2
UNIPROTKB|F1PXJ5 - symbol:PUSL1 "tRNA pseudouridine synth... 104 0.00032 2
UNIPROTKB|J9P592 - symbol:PUSL1 "tRNA pseudouridine synth... 104 0.00033 2
FB|FBgn0083976 - symbol:CG34140 species:7227 "Drosophila ... 93 0.00034 2
>TAIR|locus:2009021 [details] [associations]
symbol:AT1G34150 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 KO:K01855 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032 EMBL:AF360187 EMBL:AY040002
IPI:IPI00521240 RefSeq:NP_564438.1 UniGene:At.19010
ProteinModelPortal:Q9C5K6 SMR:Q9C5K6 STRING:Q9C5K6 PaxDb:Q9C5K6
PRIDE:Q9C5K6 EnsemblPlants:AT1G34150.1 GeneID:840314
KEGG:ath:AT1G34150 TAIR:At1g34150 InParanoid:Q9C5K6 OMA:KFIGEHD
PhylomeDB:Q9C5K6 ProtClustDB:CLSN2688258 ArrayExpress:Q9C5K6
Genevestigator:Q9C5K6 Uniprot:Q9C5K6
Length = 446
Score = 1207 (429.9 bits), Expect = 9.2e-123, P = 9.2e-123
Identities = 236/395 (59%), Positives = 290/395 (73%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHD-GVEDGTTLVEENRKTESXXX 71
+++L L+NRVKELE +NAKLLS++S C+C+++E K HD + D ++LV R +
Sbjct: 22 ETELVFLRNRVKELEVENAKLLSQVSSCQCQQMEVK-HDRSLSDSSSLVRRRRVRKGDKN 80
Query: 72 XXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL 131
KRYVALK+MYFG+RFYGF+++ MEP++ESE+FKALE+TRL
Sbjct: 81 SIPSHLIS-----------KRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRL 129
Query: 132 LVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC-NTNNASMGETVQEEQIEDEID 190
LV DKK+S YSRCGRTDKGVSS GQVIA++LRS +K + A + E E D
Sbjct: 130 LVGDKKDSCYSRCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGERP---EYD 186
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
YVRVLNR LP DIRVIGWSPAP DF ARFSC +REYKYFFWR+NLNLSAM+ AGKKF+GE
Sbjct: 187 YVRVLNRALPDDIRVIGWSPAPIDFHARFSCYAREYKYFFWRQNLNLSAMDFAGKKFIGE 246
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
HDFRNFCKMD ANVH Y R VT FE+SPC S EG+QLC +RGSAFLWHQ+RCMVAVL
Sbjct: 247 HDFRNFCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVL 306
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRL 370
FMIGQG+ES+DVI++LLDT PRKPQY +A EIPLVL++C+F+ + F CS A LR
Sbjct: 307 FMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEFENVDFICSPGAAESLRS 366
Query: 371 HLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSS 405
H +NE YQL++ I+ EAL NCLPL+N + S
Sbjct: 367 HFKNESLTYQLESVIYQEALRNCLPLSNNVSTEES 401
>UNIPROTKB|F1P3X5 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AADN02042043 EMBL:AADN02042044
IPI:IPI00588906 Ensembl:ENSGALT00000001417 Uniprot:F1P3X5
Length = 379
Score = 706 (253.6 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
Identities = 142/320 (44%), Positives = 208/320 (65%)
Query: 89 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
H +R+VAL++ Y G + GFAS N T+E ++F+AL+KTRL V D++ S+Y RCGRTD
Sbjct: 56 HGRRHVALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTRL-VDDRQTSNYHRCGRTD 114
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETV-QEEQIEDEIDYVRVLNRVLPKDIRVIG 207
KGVS+ GQVI++ LRSN+ E N G++ + + E+E+ Y +LNRVLP DIRV+
Sbjct: 115 KGVSAFGQVISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEELRYTHILNRVLPPDIRVLA 174
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHN 266
W+P DFSARFSC+ R Y+YFF +L+++ M +A +++VG HDFRN CKMD AN V N
Sbjct: 175 WAPVEPDFSARFSCLKRTYRYFFPCADLDVALMHTAAQRYVGTHDFRNLCKMDVANGVIN 234
Query: 267 YKRHVTSFEISPCYISFEGN-----QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESID 321
++R + S +++ E +LC ++ G AFL+HQVRCM+A+LF+IGQ +E +
Sbjct: 235 FQRTILSAQVTWADGGAESGLRDPFRLCQFEVTGQAFLYHQVRCMMAILFLIGQRMEGPE 294
Query: 322 VIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQL 381
+I+ LLD PRKPQY+MA E PLVL C+F+ +++ + HL+ Y +
Sbjct: 295 IIDELLDVEKNPRKPQYSMAVEFPLVLYDCEFENIQWHYDREVQEFNVTHLQQLWASYAV 354
Query: 382 QAAIFHEAL--LNCLPLANG 399
+ + H L L+ P+A G
Sbjct: 355 KTQVLHSMLRGLDTAPMAAG 374
Score = 41 (19.5 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 17 EALQNRVKELEADNAKLLSKLS 38
E L RV++LE + +L KLS
Sbjct: 4 EQLLRRVRDLEEEVKQLQEKLS 25
>UNIPROTKB|F1N5P3 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
IPI:IPI00688075 UniGene:Bt.33259 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:DAAA02063102
Ensembl:ENSBTAT00000019065 Uniprot:F1N5P3
Length = 481
Score = 683 (245.5 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 146/326 (44%), Positives = 206/326 (63%)
Query: 43 EKIEDKVHDGVEDGTTLVEE--NRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMY 100
EK+ +V + ++ L +E N K + + H +R+VALK+ Y
Sbjct: 12 EKLLKRVQELEQEVKRLKKEQANNKDSNIRENSSGAGGKPKRAFDFSAHGQRHVALKIAY 71
Query: 101 FGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAI 160
G + GFAS N T+E ++F+AL KTRL V +++ S+Y RCGRTDKGVS+ GQVI++
Sbjct: 72 LGWGYQGFASQENTSNTIEEKLFEALTKTRL-VENRQTSNYHRCGRTDKGVSAFGQVISL 130
Query: 161 YLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
LRS+I K ++ + ++ V + + EI Y +LNRVLP DIRV+ W+P T FSARF
Sbjct: 131 DLRSHIPKGRDSEHFNLKNEVND--VATEIRYTHILNRVLPPDIRVLAWAPVETSFSARF 188
Query: 220 SCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISP 278
SC+ R Y+YFF R NL++ M A +K+VG HDFRN CKMD AN V N++R + S ++
Sbjct: 189 SCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQR 248
Query: 279 C--YISFEG----NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI 332
+ EG QLC ++ G AFL+HQVRCM+AVLF+IGQG+E +VI+ LL+
Sbjct: 249 VGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKN 308
Query: 333 PRKPQYNMAPEIPLVLQSCDFDGLKF 358
P+KPQY+MA E PLVL C F+ +K+
Sbjct: 309 PQKPQYSMAVEFPLVLYDCKFENIKW 334
Score = 38 (18.4 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 15 QLEALQNRVKELEADNAKLLSK 36
Q E L RV+ELE + K L K
Sbjct: 10 QTEKLLKRVQELEQE-VKRLKK 30
>UNIPROTKB|Q3SX07 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005634 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:BC104569 IPI:IPI00688075
RefSeq:NP_001029684.1 UniGene:Bt.33259 ProteinModelPortal:Q3SX07
STRING:Q3SX07 PRIDE:Q3SX07 GeneID:515824 KEGG:bta:515824 CTD:83480
HOGENOM:HOG000199032 HOVERGEN:HBG053769 InParanoid:Q3SX07
OrthoDB:EOG4B2SXG NextBio:20872016 Uniprot:Q3SX07
Length = 481
Score = 683 (245.5 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 146/326 (44%), Positives = 206/326 (63%)
Query: 43 EKIEDKVHDGVEDGTTLVEE--NRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMY 100
EK+ +V + ++ L +E N K + + H +R+VALK+ Y
Sbjct: 12 EKLLKRVQELEQEVKRLKKEQANNKDSNIRENSSGAGGKPKRAFDFSAHGQRHVALKIAY 71
Query: 101 FGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAI 160
G + GFAS N T+E ++F+AL KTRL V +++ S+Y RCGRTDKGVS+ GQVI++
Sbjct: 72 LGWGYQGFASQENTSNTIEEKLFEALTKTRL-VENRQTSNYHRCGRTDKGVSAFGQVISL 130
Query: 161 YLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
LRS+I K ++ + ++ V + + EI Y +LNRVLP DIRV+ W+P T FSARF
Sbjct: 131 DLRSHIPKGRDSEHFNLKNEVND--VATEIRYTHILNRVLPPDIRVLAWAPVETSFSARF 188
Query: 220 SCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISP 278
SC+ R Y+YFF R NL++ M A +K+VG HDFRN CKMD AN V N++R + S ++
Sbjct: 189 SCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQR 248
Query: 279 C--YISFEG----NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI 332
+ EG QLC ++ G AFL+HQVRCM+AVLF+IGQG+E +VI+ LL+
Sbjct: 249 VGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKN 308
Query: 333 PRKPQYNMAPEIPLVLQSCDFDGLKF 358
P+KPQY+MA E PLVL C F+ +K+
Sbjct: 309 PQKPQYSMAVEFPLVLYDCKFENIKW 334
Score = 38 (18.4 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 15 QLEALQNRVKELEADNAKLLSK 36
Q E L RV+ELE + K L K
Sbjct: 10 QTEKLLKRVQELEQE-VKRLKK 30
>RGD|1310757 [details] [associations]
symbol:Pus3 "pseudouridylate synthase 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISO] [GO:0031119
"tRNA pseudouridine synthesis" evidence=IEA;ISO] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 RGD:1310757
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:BC158693 EMBL:CH474007
IPI:IPI00194825 RefSeq:NP_001101604.1 UniGene:Rn.22763
STRING:B0BN58 Ensembl:ENSRNOT00000017648 GeneID:315554
KEGG:rno:315554 UCSC:RGD:1310757 NextBio:669414
Genevestigator:B0BN58 Uniprot:B0BN58
Length = 479
Score = 662 (238.1 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 137/294 (46%), Positives = 196/294 (66%)
Query: 89 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V ++ S+Y RCGRTD
Sbjct: 59 HGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALIKTRL-VESRQTSNYHRCGRTD 117
Query: 149 KGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
KGVS+ GQVI++ LRS + ++ ++++ + + I EI Y +LNRVLP DIRV+
Sbjct: 118 KGVSAFGQVISLDLRSQFPRSRDSEDSNLKDGADD--IAKEIRYAHILNRVLPADIRVLA 175
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHN 266
W+PA FSARFSC+ R Y+YFF +L+++ M A +K+VG HDFRN CKMD AN V N
Sbjct: 176 WAPAEPSFSARFSCLERTYRYFFPCADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVTN 235
Query: 267 YKRHVTSFEI-----SPCYISFEGN-QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
++R + S ++ SP +G QLC ++ G AFL+HQVRCM+A+LF+IGQG+E
Sbjct: 236 FQRTILSAQVQTVAQSPGEEGRQGPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKP 295
Query: 321 DVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRL-HLR 373
++I+ LL+ P+KPQY+MA E PLVL C F+ K+ + H+ + HL+
Sbjct: 296 EIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEV-HEFNVTHLQ 348
Score = 47 (21.6 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 13 QSQLEALQNRVKELEADNAKL 33
++Q+E L +RVKELE + +L
Sbjct: 7 RNQIEKLLSRVKELEQEVERL 27
>MGI|MGI:1914299 [details] [associations]
symbol:Pus3 "pseudouridine synthase 3" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IDA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IDA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 MGI:MGI:1914299 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 UniGene:Mm.482285 GO:GO:0031119
KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG OMA:NHAVKTH EMBL:AF266505
EMBL:AK079095 EMBL:BC029253 IPI:IPI00331619 RefSeq:NP_075781.3
UniGene:Mm.425574 ProteinModelPortal:Q9JI38 SMR:Q9JI38
STRING:Q9JI38 PhosphoSite:Q9JI38 PRIDE:Q9JI38
Ensembl:ENSMUST00000034615 GeneID:67049 KEGG:mmu:67049
UCSC:uc009oth.2 GeneTree:ENSGT00510000047444 InParanoid:Q9JI38
BRENDA:4.2.1.70 NextBio:323424 Bgee:Q9JI38 CleanEx:MM_PUS3
Genevestigator:Q9JI38 GermOnline:ENSMUSG00000032103 Uniprot:Q9JI38
Length = 481
Score = 652 (234.6 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
Identities = 134/279 (48%), Positives = 183/279 (65%)
Query: 89 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V ++ S+Y RCGRTD
Sbjct: 61 HGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-VESRQTSNYHRCGRTD 119
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEIDYVRVLNRVLPKDIRVI 206
KGVS+ GQVI++ LRS T+ S ++ E + EI Y +LNRVLP DIRV+
Sbjct: 120 KGVSAFGQVISLDLRSQFP---TSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVL 176
Query: 207 GWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VH 265
W+P FSARFSC+ R Y+YFF R +L+++ M A +K+VG HDFRN CKMD AN V
Sbjct: 177 AWAPVEPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVI 236
Query: 266 NYKRHVTSFEISPCYIS------FEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
N++R + ++ S E QLC ++ G AFL+HQVRCM+A+LF+IGQG+E
Sbjct: 237 NFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEK 296
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
++I+ LL+ P+KPQY+MA E PLVL C F+ K+
Sbjct: 297 PEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCKFENTKW 335
Score = 55 (24.4 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 13 QSQLEALQNRVKELEADNAKLLSK 36
++Q+E L NRVKELE + +L K
Sbjct: 7 RNQIEKLLNRVKELEQEVERLKKK 30
>UNIPROTKB|E2RGS6 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 OMA:NHAVKTH
GeneTree:ENSGT00510000047444 EMBL:AAEX03003383 RefSeq:XP_536533.1
ProteinModelPortal:E2RGS6 Ensembl:ENSCAFT00000016731 GeneID:479397
KEGG:cfa:479397 NextBio:20854586 Uniprot:E2RGS6
Length = 480
Score = 666 (239.5 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 143/325 (44%), Positives = 200/325 (61%)
Query: 43 EKIEDKVHDGVEDGTTLVEE--NRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMY 100
EK+ +V + E+ L +E N K +S + H +R+VALK+ Y
Sbjct: 12 EKLLKRVQELEEEVQRLKKEQANNK-DSNARENSLGARKAKRAFDFSAHGRRHVALKIAY 70
Query: 101 FGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAI 160
G + GFAS N T+E ++F AL KTRL V ++ S+Y RCGRTDKGVS+ GQVI++
Sbjct: 71 LGWGYQGFASQENTNNTIEEKLFDALTKTRL-VESRQTSNYHRCGRTDKGVSAFGQVISL 129
Query: 161 YLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFS 220
LRS+ E +T+ S + + + EI Y +LNRVLP DIRV+ W+P FSARFS
Sbjct: 130 DLRSHFPEGSTSEDSNLKN-EVNDVAKEIRYTHILNRVLPPDIRVLAWAPVEPSFSARFS 188
Query: 221 CISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPC 279
C+ R Y+YFF R +L++ M A +K+VG HDFRN CKMD AN V N++R V ++
Sbjct: 189 CLERTYRYFFPRADLDIITMNYAAQKYVGTHDFRNLCKMDVANGVINFQRTVLFAQVELV 248
Query: 280 YISFEGNQ------LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
S + Q LC ++ G AFL+HQVRCM+A+LF+IGQG+E ++I+ LL+ P
Sbjct: 249 GQSLDKEQWQEPFQLCQFEVVGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNP 308
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKF 358
+KPQY+MA E PLVL C F+ +K+
Sbjct: 309 QKPQYSMAVEFPLVLYDCKFENVKW 333
Score = 40 (19.1 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 15 QLEALQNRVKELEADNAKL 33
Q+E L RV+ELE + +L
Sbjct: 10 QIEKLLKRVQELEEEVQRL 28
>UNIPROTKB|Q9BZE2 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005634 GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:AF325689 EMBL:AK055702
EMBL:AK314251 EMBL:BC004822 EMBL:BC013427 IPI:IPI00306260
RefSeq:NP_112597.3 UniGene:Hs.660922 ProteinModelPortal:Q9BZE2
SMR:Q9BZE2 STRING:Q9BZE2 PhosphoSite:Q9BZE2 DMDM:126302589
PaxDb:Q9BZE2 PRIDE:Q9BZE2 DNASU:83480 Ensembl:ENST00000227474
Ensembl:ENST00000530811 GeneID:83480 KEGG:hsa:83480 UCSC:uc001qcy.2
GeneCards:GC11M125763 H-InvDB:HIX0010246 HGNC:HGNC:25461
HPA:HPA038040 neXtProt:NX_Q9BZE2 PharmGKB:PA134874048
InParanoid:Q9BZE2 OMA:NHAVKTH PhylomeDB:Q9BZE2 GenomeRNAi:83480
NextBio:72425 ArrayExpress:Q9BZE2 Bgee:Q9BZE2 CleanEx:HS_PUS3
Genevestigator:Q9BZE2 GermOnline:ENSG00000110060 Uniprot:Q9BZE2
Length = 481
Score = 666 (239.5 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 149/371 (40%), Positives = 218/371 (58%)
Query: 43 EKIEDKVHDGVEDGTTLVEENRKT--ESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMY 100
EK+ +V + ++ L +E K +S + H +R+VAL++ Y
Sbjct: 12 EKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAHGRRHVALRIAY 71
Query: 101 FGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAI 160
G + GFAS N T+E ++F+AL KTRL V ++ S+Y RCGRTDKGVS+ GQVI++
Sbjct: 72 MGWGYQGFASQENTNNTIEEKLFEALTKTRL-VESRQTSNYHRCGRTDKGVSAFGQVISL 130
Query: 161 YLRSNIKECNTNNASMGETVQEEQ--IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSAR 218
LRS S V+EE +EI Y +LNRVLP DIR++ W+P FSAR
Sbjct: 131 DLRSQFPR---GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSAR 187
Query: 219 FSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEIS 277
FSC+ R Y+YFF R +L++ M+ A +K+VG HDFRN CKMD AN V N++R + S ++
Sbjct: 188 FSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQ 247
Query: 278 PCYIS-FEGN-----QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
S EG QLC ++ G AFL+HQVRCM+A+LF+IGQG+E ++I+ LL+
Sbjct: 248 LVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEK 307
Query: 332 IPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL- 390
P+KPQY+MA E PLVL C F+ +K+ +A HL+ + ++ + + L
Sbjct: 308 NPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHMLYSMLQ 367
Query: 391 -LNCLPLANGL 400
L+ +P+ G+
Sbjct: 368 GLDTVPVPCGI 378
Score = 40 (19.1 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 13 QSQLEALQNRVKELEADNAKL 33
++Q E L RV+ELE + +L
Sbjct: 8 RNQTEKLLKRVRELEQEVQRL 28
>UNIPROTKB|F1S759 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:NHAVKTH GeneTree:ENSGT00510000047444
EMBL:CU928873 RefSeq:XP_003482688.1 Ensembl:ENSSSCT00000016588
GeneID:100739830 KEGG:ssc:100739830 Uniprot:F1S759
Length = 479
Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
Identities = 143/326 (43%), Positives = 205/326 (62%)
Query: 43 EKIEDKVHDGVEDGTTLVEE--NRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMY 100
EK+ +V + ++ L +E N K +S + H +R+VALK+ Y
Sbjct: 12 EKLLKRVQELEQEVQRLKQEQANNK-DSKVRESSSGGRRAKRAFDFSAHGRRHVALKIAY 70
Query: 101 FGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAI 160
G + GFAS N T+E ++F+AL KTRL V +++ S+Y RCGRTDKGVS+ GQVI++
Sbjct: 71 LGWGYQGFASQENTSNTIEEKLFEALTKTRL-VENRQTSNYHRCGRTDKGVSAFGQVISL 129
Query: 161 YLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
LRS+ +K+ ++ + ++ + V + EI Y +LNRVLP DIRV+ W+P FSARF
Sbjct: 130 DLRSHFLKDKDSEDINLKDEVNDAT--KEIRYTHILNRVLPPDIRVLAWAPVEPSFSARF 187
Query: 220 SCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISP 278
SC+ R Y+YFF +L++ M A +K+VG HDFRN CKMD AN V N++R + S ++
Sbjct: 188 SCLERTYRYFFPHADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQL 247
Query: 279 CYISFEGN------QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI 332
S E QLC ++ G AFL+HQVRCM+AVLF+IGQG+E +VI+ LL+
Sbjct: 248 LSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKN 307
Query: 333 PRKPQYNMAPEIPLVLQSCDFDGLKF 358
P+KPQY+MA E PLVL C F+ +K+
Sbjct: 308 PQKPQYSMAVEFPLVLYDCKFENIKW 333
>UNIPROTKB|F1RVF1 [details] [associations]
symbol:LOC100739830 "tRNA pseudouridine synthase"
species:9823 "Sus scrofa" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047444 OMA:CQVISID
Ensembl:ENSSSCT00000012144 Uniprot:F1RVF1
Length = 479
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 142/326 (43%), Positives = 204/326 (62%)
Query: 43 EKIEDKVHDGVEDGTTLVEE--NRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMY 100
EK+ +V + ++ L +E N K +S + H +R+VALK+ Y
Sbjct: 12 EKLLKRVQELEQEVQRLKQEQANNK-DSKVRESSSGGRRAKRAFDFSAHGRRHVALKIAY 70
Query: 101 FGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAI 160
G + GFAS N T+E ++F+AL KTRL V +++ S+Y RCGRTDKGVS+ GQVI++
Sbjct: 71 LGWGYQGFASQENTSNTIEEKLFEALTKTRL-VENRQTSNYHRCGRTDKGVSAFGQVISL 129
Query: 161 YLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
LRS+ +K+ ++ + ++ + V + EI Y +LNRVLP DIRV+ W+P FSARF
Sbjct: 130 DLRSHFLKDKDSEDINLKDEVNDAT--KEIRYTHILNRVLPPDIRVLAWAPVEPSFSARF 187
Query: 220 SCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISP 278
SC+ R Y+YFF +L++ M A +K+VG HDFRN CKMD AN V N++R + S ++
Sbjct: 188 SCLERTYRYFFPHADLDIVTMNYAAQKYVGTHDFRNLCKMDVANGVTNFQRTILSAQVQL 247
Query: 279 CYISFEGN------QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI 332
S E QLC ++ G AFL+HQVRCM+AVLF+IGQG+E +VI+ LL+
Sbjct: 248 LSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCMMAVLFLIGQGMEKPEVIDELLNIEKN 307
Query: 333 PRKPQYNMAPEIPLVLQSCDFDGLKF 358
P+K QY+MA E PLVL C F+ +K+
Sbjct: 308 PQKHQYSMAVEFPLVLYDCKFENIKW 333
>ZFIN|ZDB-GENE-030131-9433 [details] [associations]
symbol:pus3 "pseudouridylate synthase 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 ZFIN:ZDB-GENE-030131-9433 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 CTD:83480 HOGENOM:HOG000199032
HOVERGEN:HBG053769 OrthoDB:EOG4B2SXG EMBL:BC049516 IPI:IPI00509994
RefSeq:NP_956361.1 UniGene:Dr.79340 ProteinModelPortal:Q7ZW97
PRIDE:Q7ZW97 GeneID:337487 KEGG:dre:337487 InParanoid:Q7ZW97
NextBio:20812266 ArrayExpress:Q7ZW97 Bgee:Q7ZW97 Uniprot:Q7ZW97
Length = 460
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 137/325 (42%), Positives = 201/325 (61%)
Query: 89 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
H +R+VAL++ Y G ++ GFA N + TVE+ +F+AL KT+L + D++ S Y RCGRTD
Sbjct: 55 HPRRHVALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKL-IQDRQTSCYHRCGRTD 113
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGET-VQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
KGVS+ QVI+I LRS + V+ + DE+ YV++LNRVLP DIR++
Sbjct: 114 KGVSAFSQVISIDLRSTQYGGGLGVTVPADVDVKGKTSADELPYVKILNRVLPHDIRILQ 173
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHN 266
W+P + FSARF C SR Y+Y+F R +L+L M A K++ G HDFRN CKMD N V
Sbjct: 174 WAPVESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGTHDFRNLCKMDVGNGVLQ 233
Query: 267 YKRHVTSFEISPCYISF-----EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESID 321
++R + S + P + + +QL +++G A L+HQVRCM+A+L +IGQ LE+ +
Sbjct: 234 FQRTILSASVQPAQLPHPSVHNDPHQLFVFQVKGLALLYHQVRCMMALLLLIGQKLEAPE 293
Query: 322 VIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQL 381
VI+ LLD PRKPQY+MA + PLVL C F+G+ + ++ +H+ N + +
Sbjct: 294 VIDQLLDVEKNPRKPQYSMAVDYPLVLYDCHFEGVNWRNEIEE----EIHILNTFHQHWV 349
Query: 382 QAAIFHEALLNCLP-LAN-GLEIGS 404
Q A+ + LL + L N E+GS
Sbjct: 350 QNAVKTQILLGMIQGLQNTSTEMGS 374
>DICTYBASE|DDB_G0288909 [details] [associations]
symbol:pus3 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004730 "pseudouridylate
synthase activity" evidence=ISS] [GO:0016853 "isomerase activity"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0288909 GO:GO:0005634 GO:GO:0005737
EMBL:AAFI02000126 GenomeReviews:CM000154_GR GO:GO:0003723
GO:GO:0006396 GO:GO:0008033 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0004730 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
RefSeq:XP_636482.1 ProteinModelPortal:Q54I97 STRING:Q54I97
EnsemblProtists:DDB0231223 GeneID:8626865 KEGG:ddi:DDB_G0288909
InParanoid:Q54I97 OMA:PPYEMAS Uniprot:Q54I97
Length = 491
Score = 446 (162.1 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 92/207 (44%), Positives = 130/207 (62%)
Query: 155 GQVIAIYLRSNIKECNTNNAS-MGETVQEEQIED--EIDYVRVLNRVLPKDIRVIGWSPA 211
G I+ +SN E NN + ++ IED E+ Y+++LN VLP +IR++ W+P
Sbjct: 172 GGPISNRTKSNKTELTKNNDNEKARKGNKKSIEDDEELPYIKMLNGVLPPEIRILAWAPV 231
Query: 212 PTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHV 271
P F+ARFS +SR YKYFF L+L+ M+ A K ++GEH++ NFCK+D NV ++ R +
Sbjct: 232 PFHFNARFSTLSRTYKYFFNPNGLDLNLMKEASKLYLGEHNYINFCKIDV-NVKSFMRVI 290
Query: 272 TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
F+I E ++L I+G AFLWHQ+RCM+AVLF+IGQ +I +I LLDTN
Sbjct: 291 LQFDIE----KVENSELYVATIKGFAFLWHQIRCMMAVLFLIGQKKANISLITQLLDTNK 346
Query: 332 IPRKPQYNMAPEIPLVLQSCDFDGLKF 358
KP Y MA E+PLVL C +D + F
Sbjct: 347 TITKPPYEMASEVPLVLFDCGYDDIDF 373
Score = 200 (75.5 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 40/79 (50%), Positives = 57/79 (72%)
Query: 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
+KR+VA K+ Y G F+GFA+ E T+E+ + KA KT L + D K ++Y + GRTDK
Sbjct: 83 YKRHVAFKLSYVGWPFFGFAAQDCSEETIENYLIKAFLKTSL-IPDIKTANYFKSGRTDK 141
Query: 150 GVSSVGQVIAIYLRSNIKE 168
GVS+ GQVI++Y+RSN+KE
Sbjct: 142 GVSAYGQVISLYVRSNLKE 160
>CGD|CAL0000624 [details] [associations]
symbol:orf19.6297 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 CGD:CAL0000624 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:AACQ01000212
EMBL:AACQ01000211 RefSeq:XP_711136.1 RefSeq:XP_711154.1
ProteinModelPortal:Q59N30 STRING:Q59N30 GeneID:3647251
GeneID:3647265 KEGG:cal:CaO19.13676 KEGG:cal:CaO19.6297
Uniprot:Q59N30
Length = 489
Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
Identities = 129/285 (45%), Positives = 171/285 (60%)
Query: 92 RYVALKVMYFGQRFYGFAS--DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
R+VA K Y G + G A + PTVE KAL K +L+ +E +SRCGRTDK
Sbjct: 130 RFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFSRCGRTDK 189
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--IG 207
GVS++ QVI+I +RSNI N +N + EIDY+ VLN LP DI+V I
Sbjct: 190 GVSAMNQVISINVRSNITLENQSNPEFDDL--------EIDYISVLNANLPSDIKVHSIC 241
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHN 266
P P DF ARFSC+SR Y+Y F +++L++ M K + G HDFRNFCK+D + + N
Sbjct: 242 LRPPP-DFDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITN 300
Query: 267 YKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
+ R + +I I + C ++GSAFLWHQVRCMVA+LF IGQ LES +I L
Sbjct: 301 FVREIYQSQI----IHLHQDYYC-FDLKGSAFLWHQVRCMVAILFTIGQSLESPSIITDL 355
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLH 371
+DTN P KPQY MA +IPLVL C+F +++ + D + RLH
Sbjct: 356 MDTNKFPTKPQYEMAHDIPLVLYDCEFPSMEWKSTDD---EYRLH 397
>POMBASE|SPAC25B8.05 [details] [associations]
symbol:SPAC25B8.05 "tRNA-pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPAC25B8.05 GO:GO:0005829 GO:GO:0005634 EMBL:CU329670
GO:GO:0003723 GO:GO:0016829 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000199032 OMA:KFSRCGR OrthoDB:EOG46T69C PIR:T50192
RefSeq:NP_594465.1 ProteinModelPortal:Q9UTB3 STRING:Q9UTB3
EnsemblFungi:SPAC25B8.05.1 GeneID:2541578 KEGG:spo:SPAC25B8.05
NextBio:20802672 Uniprot:Q9UTB3
Length = 450
Score = 431 (156.8 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 89/199 (44%), Positives = 124/199 (62%)
Query: 174 ASMGETVQEEQIEDE---IDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF 230
++MG+ + E I Y VLNR+LP DIR+ G++ P F ARFSC R YKY F
Sbjct: 153 SAMGQVISLNVRHSERRPIIYCDVLNRLLPADIRITGYAFPPEGFDARFSCKQRHYKYLF 212
Query: 231 WRE----NLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEG 285
++ +L++ M A ++GEHDFRNFCK+DA+ + NY R + S ++ C G
Sbjct: 213 TKDYPGGSLDIDRMNEAAALYLGEHDFRNFCKIDASKQITNYHRRILSSKVI-CIDPSTG 271
Query: 286 NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIP 345
L A ++G+AFLWHQVRCM+A+LF+IGQ LE +I LLD +P KP Y+MA E P
Sbjct: 272 --LYAFDLQGTAFLWHQVRCMMAILFLIGQKLEPASLINDLLDIKKVPTKPIYDMASEYP 329
Query: 346 LVLQSCDFDGLKFTCSLDA 364
L+L CDFD +++T D+
Sbjct: 330 LILYDCDFDNIEWTLPTDS 348
Score = 149 (57.5 bits), Expect = 1.8e-54, Sum P(2) = 1.8e-54
Identities = 51/159 (32%), Positives = 76/159 (47%)
Query: 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKT 66
EL LQ +L N KE+E N + +K L +IE + H E LV ++
Sbjct: 20 ELDGKLQKNTNSLPN--KEIEGKNEVIKNKNKLDNGNEIEPQ-HLSQE----LVLQHALQ 72
Query: 67 ESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFAS--DGNMEPTVESEIFK 124
++ T+ +VA K Y G + G A + PTVE ++F+
Sbjct: 73 DASSLPKLKPVRPFQLEKTV------FVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFE 126
Query: 125 ALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLR 163
AL + L + D +SRCGRTDKGVS++GQVI++ +R
Sbjct: 127 ALLRAHL-ITDPSSCSFSRCGRTDKGVSAMGQVISLNVR 164
>SGD|S000001895 [details] [associations]
symbol:DEG1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;IMP;IDA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0016853 "isomerase
activity" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000001895 GO:GO:0005634 GO:GO:0005737 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 KO:K01855 BRENDA:5.4.99.12 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
GeneTree:ENSGT00510000047444 EMBL:AY693197 PIR:S14145
RefSeq:NP_116655.1 ProteinModelPortal:P31115 SMR:P31115
DIP:DIP-5151N IntAct:P31115 MINT:MINT-531752 STRING:P31115
PaxDb:P31115 PeptideAtlas:P31115 PRIDE:P31115 EnsemblFungi:YFL001W
GeneID:850550 KEGG:sce:YFL001W CYGD:YFL001w OMA:KFSRCGR
OrthoDB:EOG46T69C NextBio:966327 Genevestigator:P31115
GermOnline:YFL001W Uniprot:P31115
Length = 442
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 133/360 (36%), Positives = 198/360 (55%)
Query: 60 VEENRKTE-SXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP-- 116
+E+N+K + S + H R++AL+ Y G + G A P
Sbjct: 59 IEDNKKRKISQEEVTRSKAKKAPKKFDFSKHNTRFIALRFAYLGWNYNGLAVQKEYTPLP 118
Query: 117 TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNAS 175
TVE I +A+ K +L+ + + + +SRCGRTDKGVS++ QVI++ +RSN+ T+
Sbjct: 119 TVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSNL----TDEEQ 174
Query: 176 MGETVQEEQIEDEIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYFFWRE 233
T EI YV VLN++LP DIR+ + P P +F ARFSC+ R YKY F +
Sbjct: 175 RDPTNDSR----EIPYVHVLNQLLPDDIRISAVCLRPPP-NFDARFSCVHRHYKYIFNGK 229
Query: 234 NLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIK 292
NLN+ M A FVGE DFRNFCK+D + + N+KR + S +I P +F C
Sbjct: 230 NLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETF----YC-FD 284
Query: 293 IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCD 352
+ GSAFLWHQVRCM+A+LF++GQ LE +++ L D P++P Y MA +IPL+L C
Sbjct: 285 LVGSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCK 344
Query: 353 FDGLKFT-CSLDAGHDLRLHLRNECQV--YQLQAAIFHEALLNCLPLANGLEIGSSLIHL 409
F + + ++D ++ E Y+L+AA+ + + LP AN ++I+L
Sbjct: 345 FPEMDWQEPTVDDYKAIKFTTATEALTLHYELKAAVCN-IFKDVLPTANTNNFSKTIINL 403
>FB|FBgn0034703 [details] [associations]
symbol:CG3045 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE013599 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047444
EMBL:AY058376 RefSeq:NP_611646.1 UniGene:Dm.4296 SMR:Q9W282
STRING:Q9W282 EnsemblMetazoa:FBtr0071787 GeneID:37531
KEGG:dme:Dmel_CG3045 UCSC:CG3045-RA FlyBase:FBgn0034703
InParanoid:Q9W282 OMA:CQVISID OrthoDB:EOG4N5TCH GenomeRNAi:37531
NextBio:804123 Uniprot:Q9W282
Length = 499
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 137/353 (38%), Positives = 194/353 (54%)
Query: 6 QELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRK 65
+E + L +Q E + ++V +LEA N +L + L EK DK HD G E K
Sbjct: 20 REALEKL-TQTELI-DKVIQLEAYNFQLRNLLQKKLSEK--DK-HDKEYSGLIGNEAEGK 74
Query: 66 TESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKA 125
+ H KR+V LK+ YFG + GFA + T+ES +F+A
Sbjct: 75 VSQVAKTSSKVQKIRKFDWSSAH--KRHVLLKITYFGWDYQGFACQEDSNDTIESNLFRA 132
Query: 126 LEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQI 185
L +T L+ + S+Y RCGRTDK VS+ QVI+I LRS + + + T +
Sbjct: 133 LART-CLIESRATSNYHRCGRTDKEVSAFCQVISIDLRSK----HPPESQLDPTA----L 183
Query: 186 EDEIDYVRVLNRVLPKDIRVIGWSPAPTD-FSARFSCISREYKYFFWRENLNLSAMESAG 244
EIDY +LNRVLPK+I+ + W P + +SARF C+SR Y+Y+F + +L+++AM A
Sbjct: 184 SSEIDYCGLLNRVLPKNIQCVAWMPLRSPVYSARFDCVSRTYRYYFPKGDLDIAAMRKAC 243
Query: 245 KKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPC---YISFEGNQLCAIKIRGSAFLW 300
V DFRNFCKMD N V NY R++ S + C + G + ++I+ +AFLW
Sbjct: 244 DLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEACDQTNHTNSGYDMYYLEIQANAFLW 303
Query: 301 HQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
HQ+RC++AVL ++GQ E+ VI LLD P KPQY A +PL L CDF
Sbjct: 304 HQIRCIMAVLLLVGQKKENPGVISDLLDVESNPCKPQYTPAIGLPLNLFRCDF 356
>ASPGD|ASPL0000040109 [details] [associations]
symbol:AN3170 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:BN001306
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000199032
EnsemblFungi:CADANIAT00009900 OMA:LWDCIFP Uniprot:C8VIE4
Length = 664
Score = 214 (80.4 bits), Expect = 3.1e-44, Sum P(4) = 3.1e-44
Identities = 49/103 (47%), Positives = 63/103 (61%)
Query: 141 YSRCGRTDKGVSSVGQVIAIYLRS---NIKE------CNTNNASMGETVQEEQ---IEDE 188
YS+ GRTD+GVS+ GQVI + +RS KE N + ETV +E I DE
Sbjct: 240 YSKAGRTDRGVSAFGQVIGLKVRSARPKRKEPKPAQVSNDTAETTRETVADEDWDDIADE 299
Query: 189 IDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF 230
+ Y+ +LN+ LP+DIRV+ W P P DF AR+SC R YKYFF
Sbjct: 300 LPYISLLNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKYFF 342
Score = 204 (76.9 bits), Expect = 3.1e-44, Sum P(4) = 3.1e-44
Identities = 39/69 (56%), Positives = 48/69 (69%)
Query: 285 GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEI 344
G Q+ ++GSAFLWHQVR MV +LF++GQGLES V+ LLD PRKP Y MA +
Sbjct: 454 GCQVYVFNLQGSAFLWHQVRHMVGILFLVGQGLESPSVVRELLDVTKNPRKPMYEMASDA 513
Query: 345 PLVLQSCDF 353
PLVL +C F
Sbjct: 514 PLVLWNCVF 522
Score = 103 (41.3 bits), Expect = 3.1e-44, Sum P(4) = 3.1e-44
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 231 WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEI 276
+RE L++ AM A K F G HDFRNFCK+D + + N++R + +I
Sbjct: 367 YREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIENFERIIYRADI 414
Score = 95 (38.5 bits), Expect = 3.1e-44, Sum P(4) = 3.1e-44
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRLL 132
R++ALK Y GQR+ G N PT+E E++KAL +TRL+
Sbjct: 165 RFIALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMRTRLI 208
>WB|WBGene00006473 [details] [associations]
symbol:tag-124 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:Z47075 RefSeq:NP_496062.3
GeneID:174509 KEGG:cel:CELE_E02H1.3 CTD:174509 KO:K01855
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000199032
OMA:NHAVKTH GeneTree:ENSGT00510000047444 PIR:T20413
ProteinModelPortal:Q09524 SMR:Q09524 STRING:Q09524
EnsemblMetazoa:E02H1.3 UCSC:E02H1.3.1 WormBase:E02H1.3
InParanoid:Q09524 NextBio:884332 Uniprot:Q09524
Length = 402
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 102/276 (36%), Positives = 146/276 (52%)
Query: 89 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
H +R +A++ Y G G + + TVE+ I +AL KT L + D + +SRCGRTD
Sbjct: 27 HPRRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHL-IEDWTKCDFSRCGRTD 85
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED------EIDYVRVLNRVLPKD 202
KGVS+ Q A+ +RS + ++ QE Q D E+ YV++LN VLPK
Sbjct: 86 KGVSAFKQTAAMVVRSLCP--GDSGVFWSDSTQEHQKVDYKASGEELPYVKMLNGVLPKT 143
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA 262
IRV W+P F+ARF C R YKY F + +LNL M + VGEHDF NFC++D
Sbjct: 144 IRVFAWAPVAQTFNARFDCNRRTYKYSFAKADLNLEKMRQGAELLVGEHDFSNFCQIDMN 203
Query: 263 N---VHNYKRHVTSFEISPCYISFEGNQLCAIK--IRGSAFLWHQVRCMVAVLFMIGQGL 317
+ +Y R V ++ E + ++ + GS FLWH +R +V +L IG+
Sbjct: 204 EKRLLQSYVRKVYEVKVEQVSTHPENDMYSMVELTVSGSGFLWHMIRYIVTILQEIGREN 263
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
E +I LLD P +PQY +A + PL L C +
Sbjct: 264 EQPSLISQLLDLKKYPSRPQYTLASDTPLCLFDCGY 299
>UNIPROTKB|G4MKS9 [details] [associations]
symbol:MGG_16154 "tRNA-pseudouridine synthase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
EMBL:CM001231 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003709381.1 ProteinModelPortal:G4MKS9
EnsemblFungi:MGG_16154T0 GeneID:12984466 KEGG:mgr:MGG_16154
Uniprot:G4MKS9
Length = 694
Score = 184 (69.8 bits), Expect = 1.1e-40, Sum P(4) = 1.1e-40
Identities = 34/63 (53%), Positives = 43/63 (68%)
Query: 293 IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCD 352
+RGSAFLWHQ+R M+AVLF++GQ LE ++ LLD P KP Y MA + PLVL C
Sbjct: 463 VRGSAFLWHQIRHMIAVLFLVGQRLEKPSIVSELLDIEKYPGKPNYPMASDAPLVLWDCL 522
Query: 353 FDG 355
+ G
Sbjct: 523 YGG 525
Score = 157 (60.3 bits), Expect = 1.1e-40, Sum P(4) = 1.1e-40
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 92 RYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLLVADK---------KESH 140
RY+ALK+ Y G+ + G + G + P +E E++KAL KT L+ D K
Sbjct: 166 RYIALKLAYLGKNYNGLEYQPSGAL-PAIEEELWKALVKTCLIFPDPERDPSEVDFKVCD 224
Query: 141 YSRCGRTDKGVSSVGQVIAIYLRSN 165
YS+CGRTD+GVS+ GQV+A+ ++SN
Sbjct: 225 YSKCGRTDRGVSAFGQVVALRVKSN 249
Score = 136 (52.9 bits), Expect = 1.1e-40, Sum P(4) = 1.1e-40
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 186 EDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF 230
+ EI Y ++LN VLP DIRV+ W P P FSAR SC R+Y+YFF
Sbjct: 310 DKEIKYCKMLNAVLPVDIRVLAWCPNPPPGFSARHSCHERQYRYFF 355
Score = 113 (44.8 bits), Expect = 1.1e-40, Sum P(4) = 1.1e-40
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEI 276
L+L AM A + F GEHDFRNFCK+DA+ + N+KR + I
Sbjct: 385 LDLDAMREAARLFEGEHDFRNFCKIDASKQISNFKRLIREASI 427
>UNIPROTKB|E9PRI9 [details] [associations]
symbol:PUS3 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120
EMBL:AP000842 GO:GO:0031119 Gene3D:3.30.70.580 PANTHER:PTHR11142
HGNC:HGNC:25461 IPI:IPI00978468 ProteinModelPortal:E9PRI9
SMR:E9PRI9 Ensembl:ENST00000534158 ArrayExpress:E9PRI9 Bgee:E9PRI9
Uniprot:E9PRI9
Length = 169
Score = 240 (89.5 bits), Expect = 5.6e-20, P = 5.6e-20
Identities = 57/160 (35%), Positives = 85/160 (53%)
Query: 43 EKIEDKVHDGVEDGTTLVEENRKT--ESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMY 100
EK+ +V + ++ L +E K +S + H +R+VAL++ Y
Sbjct: 12 EKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAHGRRHVALRIAY 71
Query: 101 FGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAI 160
G + GFAS N T+E ++F+AL KTRL V ++ S+Y RCGRTDKGVS+ GQVI++
Sbjct: 72 MGWGYQGFASQENTNNTIEEKLFEALTKTRL-VESRQTSNYHRCGRTDKGVSAFGQVISL 130
Query: 161 YLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLP 200
LRS ++ + +EI Y +LNRVLP
Sbjct: 131 DLRSQFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLP 169
>TAIR|locus:2077552 [details] [associations]
symbol:AT3G06950 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:GKSFLWE EMBL:BT029513
IPI:IPI00532571 RefSeq:NP_187351.2 UniGene:At.18751
UniGene:At.40432 ProteinModelPortal:A1A6J3 SMR:A1A6J3 STRING:A1A6J3
EnsemblPlants:AT3G06950.1 GeneID:819880 KEGG:ath:AT3G06950
TAIR:At3g06950 InParanoid:A1A6J3 PhylomeDB:A1A6J3
ProtClustDB:CLSN2690754 Genevestigator:A1A6J3 Uniprot:A1A6J3
Length = 323
Score = 219 (82.2 bits), Expect = 3.5e-16, P = 3.5e-16
Identities = 89/305 (29%), Positives = 134/305 (43%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G RF G+ + PT++S + KAL ++ +KE GRTD GV + G
Sbjct: 45 LVIAYDGTRFAGWQYQES-PPTIQSMLEKAL--IQITELGRKELQLIGAGRTDAGVHAWG 101
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N ++ +A+ LN +LPKDIRV S A +F
Sbjct: 102 QVAHFVTPFNYTSLDSFHAA-------------------LNGLLPKDIRVRELSAAVPEF 142
Query: 216 SARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKM 259
ARFS S+ Y+Y + + LN S M A FVG+HDF F
Sbjct: 143 HARFSASSKVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANA 202
Query: 260 DAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG-QGL 317
+ V + + ++ F++ + L +++ GS FL+ QVR MVA+L IG + L
Sbjct: 203 TREDGVPDPLKTISRFDV------IQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEAL 256
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIP--LVLQSCDF--DGLKFTCSLDAGHDLRLHLR 373
+S D++ +L+T +Y P P L L S + D LK R H
Sbjct: 257 DS-DIVPMILETKDRRVLAKYTSLPASPHGLCLVSVKYKEDHLKLPLDCPVTSSGRHHTI 315
Query: 374 NECQV 378
+C++
Sbjct: 316 TKCKL 320
>UNIPROTKB|F1NZ90 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
EMBL:AADN02034827 IPI:IPI00587879 Ensembl:ENSGALT00000003714
Uniprot:F1NZ90
Length = 405
Score = 204 (76.9 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 77/321 (23%), Positives = 146/321 (45%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL ++ + D K+ + RC
Sbjct: 59 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMKKMSFQRC 118
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQ++++ +R I+D ++ + N LP IR
Sbjct: 119 ARTDKGVSAAGQIVSLKVRL--------------------IDDILEKI---NNHLPSHIR 155
Query: 205 VIGWSPAPTDFSARFSCISREYKY------FFWREN--------LNLSAMESAGK---KF 247
++G F+++ C +R Y Y F +++ L+ +E ++
Sbjct: 156 ILGLKRVTGGFNSKNKCDARTYAYMLPTFAFAHKDHDVQEEAHRLSRETLEKVNSLLARY 215
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R M+
Sbjct: 216 KGTHNFHNFTSQKGPKDPSARRYIMEMYCGEPFVR-EGIEFAVIKVKGQSFMMHQIRKMI 274
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
++ I +G ES+++ + K AP + LVL+ F+ K+ G+D
Sbjct: 275 GLVIAIVKGYAP----ESIIERSWGEEKVDVPKAPGLGLVLERVHFE--KYNRRF--GND 326
Query: 368 LRLHLRNECQVYQLQAAIFHE 388
LH E + + + A+F E
Sbjct: 327 -GLHEPLEWKEEEEKIAVFKE 346
>FB|FBgn0038811 [details] [associations]
symbol:CG4159 species:7227 "Drosophila melanogaster"
[GO:0004730 "pseudouridylate synthase activity" evidence=ISS]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:AE014297 GO:GO:0003723 GO:GO:0008033
GO:GO:0016829 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 OMA:CDARTYF
RefSeq:NP_001163664.1 UniGene:Dm.27944 ProteinModelPortal:E1JIR1
SMR:E1JIR1 EnsemblMetazoa:FBtr0302323 GeneID:42440
KEGG:dme:Dmel_CG4159 FlyBase:FBgn0038811 PhylomeDB:E1JIR1
GenomeRNAi:42440 NextBio:828799 Bgee:E1JIR1 Uniprot:E1JIR1
Length = 442
Score = 199 (75.1 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 85/326 (26%), Positives = 143/326 (43%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGRTDKG 150
A+ + Y G +YG + M+ T+E E+FKA+ K + + D E S + R RTDKG
Sbjct: 105 AILLSYCGANYYGMQRNPGMQ-TIEEELFKAMLKHKWITEDSFEQIQISCFQRAARTDKG 163
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD---IRVIG 207
VS+ QV ++ L + + NA + + ++ +E RV KD R
Sbjct: 164 VSAARQVCSVKLPEEL-DLEAFNADLPQQIRLFGVE------RVTKGFNAKDQCNARTYT 216
Query: 208 WSPAPTDFSARFS-CISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHN 266
++ PT A F + + F L L ++ K + G +F NF + +
Sbjct: 217 YT-LPTVAFAPFEEKVDDVHDTFRISPEL-LQKVKETLKLYEGTKNFHNFTSKKSFLDPS 274
Query: 267 YKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
KR + SF S + S + + +K++G +F+ HQ+R MV + I +G + +E
Sbjct: 275 SKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERA 334
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQ-LQAAI 385
L + P MAP + LVL + ++ D H+ E QV + ++ I
Sbjct: 335 LTEERLDL-P---MAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQEFIEREI 390
Query: 386 FHEALLNCLPLANGLE-IGSSLIHLH 410
F + N L+ IG+ +H H
Sbjct: 391 FSQIYKTEAEQRNMLDWIGT--LHYH 414
>ASPGD|ASPL0000001573 [details] [associations]
symbol:AN6165 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=RCA] [GO:0004730 "pseudouridylate synthase activity"
evidence=RCA] [GO:0005634 "nucleus" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0031120 "snRNA pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 EMBL:BN001301 EMBL:AACD01000105
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
HOGENOM:HOG000213984 KO:K06173 OMA:IRKMISM OrthoDB:EOG48KVMJ
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_663769.1 ProteinModelPortal:Q5AZW5
STRING:Q5AZW5 EnsemblFungi:CADANIAT00006845 GeneID:2871138
KEGG:ani:AN6165.2 Uniprot:Q5AZW5
Length = 574
Score = 136 (52.9 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 36/121 (29%), Positives = 66/121 (54%)
Query: 237 LSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGS 296
L+ ++ A K+VG +F N+ + KRH+ SF+++P I +G + ++K+ G
Sbjct: 344 LARIQQALDKYVGTKNFYNYTIQKQYRDPSAKRHIKSFKLNPEPIIIDGTEWLSLKVHGQ 403
Query: 297 AFLWHQVRCMVAVLFMIGQ-GLESIDVIESLLDTN-GIPRKPQYNMAPEIPLVLQSCDFD 354
+F+ HQ+R MVA+ M+ + G + + +S + IP+ AP + L+L+ FD
Sbjct: 404 SFMMHQIRKMVAMATMVVRCGCDPARINDSYGEFKMAIPK------APGLGLLLERPVFD 457
Query: 355 G 355
G
Sbjct: 458 G 458
Score = 105 (42.0 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL----VADKKESHYSRCGR 146
K+ VA+ + Y G + G E T+E E+F A + AD K+S RC R
Sbjct: 78 KKKVAVLIGYSGTGYKGMQLS-TTEKTIEGELFTAFVAAGAISKANAADPKKSSLVRCAR 136
Query: 147 TDKGVSSVGQVIAIYL 162
TDKGV + G ++++ L
Sbjct: 137 TDKGVHAAGNIVSLKL 152
Score = 37 (18.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 30 NAKLLSKLSLCRCEKIEDKVH 50
NA K SL RC + + VH
Sbjct: 122 NAADPKKSSLVRCARTDKGVH 142
>RGD|1311871 [details] [associations]
symbol:Pus1 "pseudouridylate synthase 1" species:10116 "Rattus
norvegicus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISO]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;ISO]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA;ISO] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 191 (72.3 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 74/300 (24%), Positives = 133/300 (44%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLV----ADKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL + + D ++ + RC
Sbjct: 79 KRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRC 138
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + I+D +D + N LP IR
Sbjct: 139 ARTDKGVSAAGQVVSLKVWL--------------------IDDILDKI---NSHLPSHIR 175
Query: 205 VIGWSPAPTDFSARFSCISREYKY----FFWR--------ENLNLSA--MESAGKK---F 247
++G F+++ C +R Y Y F + E+ LSA ++ + +
Sbjct: 176 ILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCY 235
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R MV
Sbjct: 236 KGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVR-EGLEFAVIKVKGQSFMMHQIRKMV 294
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
++ I +G ES+L+ + K AP + LVL+ F+ D H+
Sbjct: 295 GLVVAIVKGYAP----ESVLERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGSDGLHE 350
>UNIPROTKB|Q4KM92 [details] [associations]
symbol:Pus1 "tRNA pseudouridine synthase A, mitochondrial"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 RGD:1311871 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
CTD:80324 HOGENOM:HOG000031229 HOVERGEN:HBG000489 EMBL:AC095390
IPI:IPI00190104 RefSeq:NP_001020734.1 UniGene:Rn.11475
ProteinModelPortal:Q4KM92 STRING:Q4KM92 Ensembl:ENSRNOT00000056780
GeneID:304567 KEGG:rno:304567 UCSC:RGD:1311871 NextBio:653267
ArrayExpress:Q4KM92 Genevestigator:Q4KM92
GermOnline:ENSRNOG00000037500 Uniprot:Q4KM92
Length = 423
Score = 191 (72.3 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 74/300 (24%), Positives = 133/300 (44%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLV----ADKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL + + D ++ + RC
Sbjct: 79 KRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRC 138
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + I+D +D + N LP IR
Sbjct: 139 ARTDKGVSAAGQVVSLKVWL--------------------IDDILDKI---NSHLPSHIR 175
Query: 205 VIGWSPAPTDFSARFSCISREYKY----FFWR--------ENLNLSA--MESAGKK---F 247
++G F+++ C +R Y Y F + E+ LSA ++ + +
Sbjct: 176 ILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCY 235
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R MV
Sbjct: 236 KGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVR-EGLEFAVIKVKGQSFMMHQIRKMV 294
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
++ I +G ES+L+ + K AP + LVL+ F+ D H+
Sbjct: 295 GLVVAIVKGYAP----ESVLERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGSDGLHE 350
>MGI|MGI:1929237 [details] [associations]
symbol:Pus1 "pseudouridine synthase 1" species:10090 "Mus
musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005667 "transcription
factor complex" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IMP] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IDA;IMP]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IDA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 MGI:MGI:1929237 GO:GO:0005739
GO:GO:0005730 GO:GO:0003677 GO:GO:0045944 GO:GO:0003723
GO:GO:0005667 GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031119 BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706 CTD:80324
HOVERGEN:HBG000489 OrthoDB:EOG4QRH44 EMBL:AF116237 EMBL:AF269250
EMBL:AB041563 EMBL:AK089258 EMBL:AK138570 EMBL:BC021446
EMBL:BC034359 IPI:IPI00123912 IPI:IPI00621502 IPI:IPI00623093
IPI:IPI00653171 RefSeq:NP_001020733.1 RefSeq:NP_062674.2
UniGene:Mm.23528 ProteinModelPortal:Q9WU56 SMR:Q9WU56 STRING:Q9WU56
PhosphoSite:Q9WU56 PRIDE:Q9WU56 DNASU:56361
Ensembl:ENSMUST00000031481 Ensembl:ENSMUST00000031483
Ensembl:ENSMUST00000112426 Ensembl:ENSMUST00000170468 GeneID:56361
KEGG:mmu:56361 UCSC:uc008yrm.1 UCSC:uc008yrn.1 UCSC:uc008yro.1
UCSC:uc008yrp.1 NextBio:312382 Bgee:Q9WU56 CleanEx:MM_PUS1
Genevestigator:Q9WU56 GermOnline:ENSMUSG00000029507 Uniprot:Q9WU56
Length = 423
Score = 190 (71.9 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 72/287 (25%), Positives = 130/287 (45%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLV----ADKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL + + D ++ + RC
Sbjct: 79 KRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRC 138
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + I+D +D + N LP IR
Sbjct: 139 ARTDKGVSAAGQVVSLKVWL--------------------IDDILDKI---NSHLPSHIR 175
Query: 205 VIGWSPAPTDFSARFSCISREYKY----FFWR--------ENLNLSA--MESAGKK---F 247
++G F+++ C +R Y Y F + E+ LSA ++ + +
Sbjct: 176 ILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACY 235
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R MV
Sbjct: 236 KGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVR-EGLEFAVIKVKGQSFMMHQIRKMV 294
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
++ I +G ES+L+ + K AP + LVL+ F+
Sbjct: 295 GLVVAIVKGYAP----ESVLERSWGEEKVDVPKAPGLGLVLERVHFE 337
>UNIPROTKB|E1BDL3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 CTD:80324 OMA:CDARTYF
EMBL:DAAA02044957 IPI:IPI00698653 RefSeq:XP_002694500.1
RefSeq:XP_593895.2 UniGene:Bt.7818 Ensembl:ENSBTAT00000017270
GeneID:515808 KEGG:bta:515808 NextBio:20872010 Uniprot:E1BDL3
Length = 433
Score = 190 (71.9 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 78/312 (25%), Positives = 138/312 (44%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL ++ + D ++ + RC
Sbjct: 89 KRKIVLLMAYSGKGYHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 148
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + + D+I + +N LP IR
Sbjct: 149 ARTDKGVSAAGQVVSLKV---------------------WLIDDI--LEKINSHLPSHIR 185
Query: 205 VIGWSPAPTDFSARFSCISREYKY----FFWR--------ENLNLSAMESAGKK------ 246
++G F+++ C +R Y Y F + E LSA E+ G+
Sbjct: 186 ILGLKRVTGGFNSKNKCDARTYVYMLPTFAFAHKDHDSQDETYRLSA-ETLGRVNRLLAC 244
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+ G H+F NF + + +R++ ++ EG + IK++G +F+ HQ+R M
Sbjct: 245 YKGTHNFHNFTSQKGPHEPSARRYILDMFCEEPFVR-EGMEFAVIKVKGQSFMTHQIRKM 303
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGH 366
V ++ I +G ES+L+ K AP + LVL+ F+ D H
Sbjct: 304 VGLVVAIVKGYAP----ESVLERCWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGHDGLH 359
Query: 367 DLRLHLRNECQV 378
+ R E +V
Sbjct: 360 EPLDWAREEAEV 371
>UNIPROTKB|F1RFR2 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031119 "tRNA
pseudouridine synthesis" evidence=IEA] [GO:0030374
"ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0030374 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
OMA:CDARTYF EMBL:CU469318 Ensembl:ENSSSCT00000010680 Uniprot:F1RFR2
Length = 433
Score = 187 (70.9 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 73/311 (23%), Positives = 137/311 (44%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL ++ + D ++ + RC
Sbjct: 89 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 148
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + + D+I + +N LP IR
Sbjct: 149 ARTDKGVSAAGQVVSLKV---------------------WLIDDI--LEKINSHLPSHIR 185
Query: 205 VIGWSPAPTDFSARFSCISREYKY------FFWREN--------LNLSAMESAGKK---F 247
++G F+++ C +R Y Y F +++ L+ ++ + +
Sbjct: 186 ILGLKRVTGGFNSKNKCDARTYFYMLPTFAFAHKDHDVQDETYRLSTETLQRVNRLLACY 245
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R MV
Sbjct: 246 KGTHNFHNFTSQKGPREPSARRYILDMFCEEPFVR-EGMEFAVIKVKGQSFMTHQIRKMV 304
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
++ I +G ES+L+ + K AP + LVL+ F+ D H+
Sbjct: 305 GLVVAIIKGYAP----ESVLERSWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGHDGVHE 360
Query: 368 LRLHLRNECQV 378
R E +V
Sbjct: 361 PLDWAREEAEV 371
>TAIR|locus:2199726 [details] [associations]
symbol:AT1G76120 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0006730
"one-carbon metabolic process" evidence=RCA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 EMBL:CP002684 GO:GO:0003723
GO:GO:0008033 EMBL:AC009978 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HOGENOM:HOG000030790
EMBL:AY086381 EMBL:AY123978 EMBL:BT000606 IPI:IPI00531649
RefSeq:NP_565126.1 UniGene:At.34703 ProteinModelPortal:Q9SGS1
EnsemblPlants:AT1G76120.1 GeneID:843944 KEGG:ath:AT1G76120
TAIR:At1g76120 InParanoid:Q9SGS1 OMA:HIGATER PhylomeDB:Q9SGS1
ProtClustDB:CLSN2689226 Genevestigator:Q9SGS1 Uniprot:Q9SGS1
Length = 463
Score = 113 (44.8 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 34/142 (23%), Positives = 63/142 (44%)
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+VG ++F NF A+ R + SF + I+ +G ++ G +F+ HQ+R M
Sbjct: 275 YVGSYNFHNFTTRTKADDPTANRQIISFTANTV-INLDGIDFIKCEVLGKSFMLHQIRKM 333
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGH 366
+ + I + S +I+S + P MAPE+ L L C F D+
Sbjct: 334 MGLAVAIMRNCASESLIQSAFSKDVNITVP---MAPEVGLYLDECFFTSYNRNFE-DSHE 389
Query: 367 DLRLHL-RNECQVYQLQAAIFH 387
++ + + E + ++L+ H
Sbjct: 390 EVSMEAYKEEAEAFKLKHIYSH 411
Score = 85 (35.0 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 174 ASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKY 228
+++G+ V I D + +V LN LP IR+ G+ FS++ C R Y Y
Sbjct: 85 SAVGQVVSGRFIVDPLGFVNRLNSNLPNQIRIFGYKHVTPSFSSKKFCDRRRYVY 139
Score = 76 (31.8 bits), Expect = 8.6e-12, Sum P(3) = 8.6e-12
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL---VADKKESH-YSRCGRTDK 149
VA+ + G + G + + T+E E+ +AL + + K + + ++R RTDK
Sbjct: 24 VAIIFAFCGVGYQGMQKNPGAK-TIEGELEEALFHAGAVPESIRGKPKLYDFARSARTDK 82
Query: 150 GVSSVGQVIA 159
GVS+VGQV++
Sbjct: 83 GVSAVGQVVS 92
>ZFIN|ZDB-GENE-041212-26 [details] [associations]
symbol:pus1 "pseudouridine synthase 1" species:7955
"Danio rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009451
"RNA modification" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0009982 "pseudouridine synthase
activity" evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 ZFIN:ZDB-GENE-041212-26
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
EMBL:CR450803 IPI:IPI00502878 Ensembl:ENSDART00000144859
Bgee:F1QWW1 Uniprot:F1QWW1
Length = 412
Score = 185 (70.2 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 74/293 (25%), Positives = 129/293 (44%)
Query: 91 KRYVALKVMYFGQRFYGFASDG-NME-PTVESEIFKALEKTRLL----VADKKESHYSRC 144
K+ VAL + Y G+ +YG + N + T+E E+ AL R + + K+ + R
Sbjct: 75 KKKVALLMAYSGKGYYGMQRNARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMSFQRS 134
Query: 145 GRTDKGVSSVGQVIA--IYLRSNIKE-CNTNNASMGETVQEEQIEDEID-----YVRVLN 196
RTDKGVS+VGQV++ +++ NI E N + + +++ + Y R +
Sbjct: 135 ARTDKGVSAVGQVVSLKVWMIENILEKINAHLPPQIRVLGCKRVTGGFNSKNNCYARTYS 194
Query: 197 RVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNF 256
+LP + +SP D++ +E F + L + + G H+F NF
Sbjct: 195 YMLP----TVAFSPK--DYN-------QEDTSFRLTSD-TLQTVNRLFGLYKGTHNFHNF 240
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ R++T +I + + I +RG +F+ HQ+R M+ ++ + +G
Sbjct: 241 TSQKGHRDPSAMRYITHMSCGEPFIR-KDVEFAVITVRGQSFMMHQIRKMIGLVIAVVKG 299
Query: 317 LESIDVIESLLDTN--GIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
VIE G+P+ AP + LVL+ FDG D H+
Sbjct: 300 YVDEGVIEKSWGEEKVGVPK------APGLGLVLERVHFDGYNKRFGGDGIHE 346
>TAIR|locus:2012898 [details] [associations]
symbol:AT1G20370 species:3702 "Arabidopsis thaliana"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA;ISS;TAS] [GO:0005829
"cytosol" evidence=IDA] [GO:0006333 "chromatin assembly or
disassembly" evidence=RCA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829
GO:GO:0003723 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
EMBL:AC026234 eggNOG:COG0101 KO:K06173 OMA:IRKMISM
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 EMBL:AY035176 EMBL:AY059123 IPI:IPI00538439
PIR:E86337 RefSeq:NP_564112.1 UniGene:At.21336
ProteinModelPortal:Q9LN29 STRING:Q9LN29 PaxDb:Q9LN29 PRIDE:Q9LN29
EnsemblPlants:AT1G20370.1 GeneID:838625 KEGG:ath:AT1G20370
TAIR:At1g20370 HOGENOM:HOG000030790 InParanoid:Q9LN29
PhylomeDB:Q9LN29 ProtClustDB:CLSN2917029 ArrayExpress:Q9LN29
Genevestigator:Q9LN29 Uniprot:Q9LN29
Length = 549
Score = 112 (44.5 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+VG H+F NF A R++ SF + I+ +G ++ G +F+ HQ+R M
Sbjct: 328 YVGSHNFHNFTTRTKAADPAANRYILSFNANTV-INLDGKDFVKCEVVGQSFMLHQIRKM 386
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ + I + +IE+ + P MAPE+ L L C F
Sbjct: 387 IGLAVAIMRNYAPESLIEASFKKDVRINVP---MAPEVGLYLDECFF 430
Score = 87 (35.7 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV-ADK-KESHY--SRCGR 146
+R VA+ + G + G + + T+E E+ +AL + AD+ K +Y +R R
Sbjct: 57 RRKVAIVFAFCGVGYQGMQKNPGAK-TIEGELEEALFHAGAVPDADRNKPRNYEWARSAR 115
Query: 147 TDKGVSSVGQVIA 159
TDKGVS+VGQV++
Sbjct: 116 TDKGVSAVGQVVS 128
Score = 76 (31.8 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 174 ASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKY 228
+++G+ V D +V LN LP IRV G+ FS++ C R Y Y
Sbjct: 121 SAVGQVVSGRFYVDPPGFVERLNSKLPDQIRVFGYKRVAPSFSSKKFCDRRRYVY 175
>UNIPROTKB|J9NVH5 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:AAEX03014587
Ensembl:ENSCAFT00000047970 Uniprot:J9NVH5
Length = 398
Score = 183 (69.5 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 73/288 (25%), Positives = 131/288 (45%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL ++ + D ++ + RC
Sbjct: 60 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRC 119
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + + D+I + +N LP IR
Sbjct: 120 ARTDKGVSAAGQVVSLKV---------------------WLIDDI--LEKINSHLPPHIR 156
Query: 205 VIGWSPAPTDFSARFSCISREYKY----FFWR--------ENLNLSAMESAGKK------ 246
++G F+++ C +R Y Y F + E+ LSA E+ +
Sbjct: 157 ILGLKRVTGGFNSKNKCDARTYFYMLPTFAFAHKDHDVQDESYRLSA-ETLQRVNGLLAC 215
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+ G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R M
Sbjct: 216 YKGTHNFHNFTSQKGPQEASARRYILDMFCEEPFVR-EGMEFAVIKVKGQSFMTHQIRKM 274
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
V +L I +G ES+L+ + K AP + LVL+ F+
Sbjct: 275 VGLLVAIVKGYAP----ESVLERSWGDAKVDVPKAPGLGLVLERVHFE 318
>UNIPROTKB|G4N3B4 [details] [associations]
symbol:MGG_07663 "tRNA pseudouridine synthase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 EMBL:CM001233 GO:GO:0003723
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_003711599.1 ProteinModelPortal:G4N3B4
EnsemblFungi:MGG_07663T0 GeneID:2683583 KEGG:mgr:MGG_07663
Uniprot:G4N3B4
Length = 720
Score = 138 (53.6 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 39/152 (25%), Positives = 73/152 (48%)
Query: 200 PKDIRVIGWSPAPT---DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNF 256
PK+ + ++PA D A + R Y+ R + +++A K+VG H+F N+
Sbjct: 468 PKEEEHV-YTPAELAIRDIKATYVAAKRRYRVSQER----IGKLQAALDKYVGTHNFHNY 522
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ + KRH+ SF+++P I + ++K+ G +F+ HQ+R MVA+ + +
Sbjct: 523 TILKKFTDSSAKRHIKSFKVNPEPIQIGETEWVSLKVHGQSFMMHQIRKMVAMAVLTVRC 582
Query: 317 LESIDVIESLLDTN--GIPRKPQYNMAPEIPL 346
+D I + IP+ P + E P+
Sbjct: 583 GVPLDRITQSYEAKRISIPKAPGLGLLLERPV 614
Score = 97 (39.2 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL----VADKKESHYSRCGR 146
K+ VA+ + Y G + G + + E T+E ++F+A + +D K+ RC R
Sbjct: 111 KKKVAVLIGYAGTGYKGMQIN-HFEKTIEGDLFRAFVDAGAISKANASDPKKVSLMRCAR 169
Query: 147 TDKGVSSVGQVIAIYLRSNIKE 168
TDKGV + VI++ L ++E
Sbjct: 170 TDKGVHAASNVISLKLIVPLEE 191
Score = 82 (33.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 38/126 (30%), Positives = 54/126 (42%)
Query: 178 ETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD--FSARFSCISREYKYFFWRENL 235
+ EE E D V +N LP IRV W T+ FS +C SR Y+Y L
Sbjct: 277 QKASEEPAETMADLVARINSHLPDQIRV--WDILRTNNSFSCYQACDSRWYEYLMPTHAL 334
Query: 236 NLSAMES-AGKKFV------GEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQL 288
+S GKK + GE+D K+ A+++N+ +V EI P S +
Sbjct: 335 IPPHPDSYLGKKVISAVNEKGEYDD---WKLKFADLNNFWENVEEKEIKPLLESLDPEVR 391
Query: 289 CAIKIR 294
+K R
Sbjct: 392 KEVKSR 397
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 30 NAKLLSKLSLCRCEKIEDKVH 50
NA K+SL RC + + VH
Sbjct: 155 NASDPKKVSLMRCARTDKGVH 175
>UNIPROTKB|E2QW32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 OMA:CDARTYF EMBL:AAEX03014587
Ensembl:ENSCAFT00000010378 Uniprot:E2QW32
Length = 438
Score = 183 (69.5 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 73/288 (25%), Positives = 131/288 (45%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL ++ + D ++ + RC
Sbjct: 93 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMRKMSFQRC 152
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + + D+I + +N LP IR
Sbjct: 153 ARTDKGVSAAGQVVSLKV---------------------WLIDDI--LEKINSHLPPHIR 189
Query: 205 VIGWSPAPTDFSARFSCISREYKY----FFWR--------ENLNLSAMESAGKK------ 246
++G F+++ C +R Y Y F + E+ LSA E+ +
Sbjct: 190 ILGLKRVTGGFNSKNKCDARTYFYMLPTFAFAHKDHDVQDESYRLSA-ETLQRVNGLLAC 248
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+ G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R M
Sbjct: 249 YKGTHNFHNFTSQKGPQEASARRYILDMFCEEPFVR-EGMEFAVIKVKGQSFMTHQIRKM 307
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
V +L I +G ES+L+ + K AP + LVL+ F+
Sbjct: 308 VGLLVAIVKGYAP----ESVLERSWGDAKVDVPKAPGLGLVLERVHFE 351
>UNIPROTKB|E1BUI0 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9031
"Gallus gallus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:AADN02040857 EMBL:AADN02040858
IPI:IPI00574950 RefSeq:XP_417580.2 UniGene:Gga.10892
Ensembl:ENSGALT00000002630 GeneID:419419 KEGG:gga:419419
NextBio:20822478 Uniprot:E1BUI0
Length = 291
Score = 149 (57.5 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 38/127 (29%), Positives = 65/127 (51%)
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPC--YIS----FEGNQ 287
LN+ AM+ A + +G HDF FC +++ + + + +I P ++S + G Q
Sbjct: 154 LNVPAMQDAAQFLLGTHDFSTFCSLNSETPFRSPVKTILQADIQPSSGFLSHHYEYRGLQ 213
Query: 288 LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLV 347
+K + +FL+ QVR MV L +GQG + I+ LL+ P + MAP L
Sbjct: 214 FWELKFKSRSFLYRQVRRMVGALVAVGQGKLAPHHIKELLEMKDARAFPAFAMAPSSGLF 273
Query: 348 LQSCDFD 354
L+S +++
Sbjct: 274 LKSVEYN 280
Score = 66 (28.3 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 169 CNTNNASMGETVQEEQIEDEIDYVRVLNRVL-PKDIRVIGWSPAPTDFSARFSCISREYK 227
CN+ + + + ++ + + LN L P+ IR++ +F ARFS +SR Y
Sbjct: 67 CNSAHLDIQRAPGKPAFQERV-LIGCLNHHLKPEPIRILSAYRVTNNFHARFSALSRTYI 125
Query: 228 Y 228
Y
Sbjct: 126 Y 126
>UNIPROTKB|G8JLB3 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730
GO:GO:0003677 GO:GO:0045944 GO:GO:0003723 GO:GO:0005667
GO:GO:0030374 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
EMBL:AC131009 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 HGNC:HGNC:15508 ChiTaRS:PUS1
ProteinModelPortal:G8JLB3 SMR:G8JLB3 PRIDE:G8JLB3
Ensembl:ENST00000322060 Bgee:G8JLB3 Uniprot:G8JLB3
Length = 384
Score = 178 (67.7 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 70/287 (24%), Positives = 129/287 (44%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL ++ + D ++ + RC
Sbjct: 55 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 114
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + + D+I + +N LP IR
Sbjct: 115 ARTDKGVSAAGQVVSLKV---------------------WLIDDI--LEKINSHLPSHIR 151
Query: 205 VIGWSPAPTDFSARFSCISREYKY----FFWR--------ENLNLSA--MESAGKK---F 247
++G F+++ C +R Y Y F + E LSA ++ + +
Sbjct: 152 ILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACY 211
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + R++ ++ EG + I+++G +F+ HQ+R MV
Sbjct: 212 KGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVR-EGLEFAVIRVKGQSFMMHQIRKMV 270
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
++ I +G ES+L+ + K AP + LVL+ F+
Sbjct: 271 GLVVAIVKGYAP----ESVLERSWGTEKVDVPKAPGLGLVLERVHFE 313
>UNIPROTKB|Q9Y606 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase A, mitochondrial"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005667 "transcription
factor complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0004730
"pseudouridylate synthase activity" evidence=NAS] [GO:0008033 "tRNA
processing" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0005739
GO:GO:0005634 GO:GO:0005730 GO:GO:0003677 GO:GO:0045944
GO:GO:0003723 GO:GO:0005667 GO:GO:0008033 GO:GO:0030374
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0004730 GO:GO:0031119
BRENDA:5.4.99.12 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Orphanet:2598 EMBL:AF318369 EMBL:AK074659 EMBL:AK292242
EMBL:BC002901 EMBL:BC009505 EMBL:BC019320 EMBL:AF116238
IPI:IPI00001716 IPI:IPI00619930 RefSeq:NP_001002019.1
RefSeq:NP_001002020.1 RefSeq:NP_079491.2 UniGene:Hs.592004
ProteinModelPortal:Q9Y606 SMR:Q9Y606 STRING:Q9Y606
PhosphoSite:Q9Y606 DMDM:114152895 PaxDb:Q9Y606 PRIDE:Q9Y606
DNASU:80324 Ensembl:ENST00000376649 Ensembl:ENST00000440818
Ensembl:ENST00000443358 GeneID:80324 KEGG:hsa:80324 UCSC:uc001ujf.3
CTD:80324 GeneCards:GC12P132413 HGNC:HGNC:15508 HPA:HPA051636
MIM:600462 MIM:608109 neXtProt:NX_Q9Y606 PharmGKB:PA34047
HOGENOM:HOG000031229 HOVERGEN:HBG000489 InParanoid:Q9Y606
OMA:CDARTYF OrthoDB:EOG4QRH44 ChiTaRS:PUS1 GenomeRNAi:80324
NextBio:70847 ArrayExpress:Q9Y606 Bgee:Q9Y606 CleanEx:HS_PUS1
Genevestigator:Q9Y606 GermOnline:ENSG00000177192 Uniprot:Q9Y606
Length = 427
Score = 178 (67.7 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 70/287 (24%), Positives = 129/287 (44%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL ++ + D ++ + RC
Sbjct: 83 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 142
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + + D+I + +N LP IR
Sbjct: 143 ARTDKGVSAAGQVVSLKV---------------------WLIDDI--LEKINSHLPSHIR 179
Query: 205 VIGWSPAPTDFSARFSCISREYKY----FFWR--------ENLNLSA--MESAGKK---F 247
++G F+++ C +R Y Y F + E LSA ++ + +
Sbjct: 180 ILGLKRVTGGFNSKNRCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACY 239
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + R++ ++ EG + I+++G +F+ HQ+R MV
Sbjct: 240 KGTHNFHNFTSQKGPQDPSACRYILEMYCEEPFVR-EGLEFAVIRVKGQSFMMHQIRKMV 298
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
++ I +G ES+L+ + K AP + LVL+ F+
Sbjct: 299 GLVVAIVKGYAP----ESVLERSWGTEKVDVPKAPGLGLVLERVHFE 341
>UNIPROTKB|P65846 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0040007 GO:GO:0005618 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR EMBL:BX842583
GO:GO:0003723 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248674 ProtClustDB:PRK00021 OMA:TPFRNVH PIR:D70565
RefSeq:NP_217972.2 RefSeq:NP_338087.1 ProteinModelPortal:P65846
SMR:P65846 EnsemblBacteria:EBMYCT00000002601
EnsemblBacteria:EBMYCT00000071399 GeneID:887590 GeneID:922954
KEGG:mtc:MT3562 KEGG:mtu:Rv3455c PATRIC:18129561
TubercuList:Rv3455c Uniprot:P65846
Length = 297
Score = 111 (44.1 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 38/134 (28%), Positives = 61/134 (45%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ TV ++ AL T + + GRTD GV + G
Sbjct: 26 LDIAYDGTDFAGWAAQVGQR-TVAGDLDAAL--TTIF---RTPVRLRAAGRTDAGVHASG 79
Query: 156 QVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
QV + + ++ + +G+ + + +R L R LP D+R++ + AP
Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGDP-------EFLPLLRRLGRFLPADVRILDITRAPAG 132
Query: 215 FSARFSCISREYKY 228
F ARFS + R Y Y
Sbjct: 133 FDARFSALRRHYVY 146
Score = 106 (42.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 34/123 (27%), Positives = 51/123 (41%)
Query: 231 WRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCA 290
W L+L AM +A + +G HDF FC+ H + T ++ S G + A
Sbjct: 166 WPRELDLDAMTAASRDLMGLHDFAAFCR------HR-EGATTIRDLQRLDWSRAGTLVTA 218
Query: 291 IKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQS 350
+ AF W VR +V L +G+ + LL G R + +AP L L
Sbjct: 219 -HVTADAFCWSMVRSLVGALLAVGEHRRATTWCRELLTATG--RSSDFAVAPAHGLTLIQ 275
Query: 351 CDF 353
D+
Sbjct: 276 VDY 278
>SGD|S000003031 [details] [associations]
symbol:PUS2 "Mitochondrial tRNA:pseudouridine synthase"
species:4932 "Saccharomyces cerevisiae" [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IGI;IMP]
[GO:0009451 "RNA modification" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0031119 "tRNA pseudouridine synthesis"
evidence=IGI;IMP] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 SGD:S000003031 GO:GO:0005739 EMBL:BK006941
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119
RefSeq:NP_011452.4 GeneID:852817 KEGG:sce:YGL063W KO:K15452
RefSeq:NP_011456.5 GeneID:852821 KEGG:sce:YGL059W eggNOG:COG0101
HOGENOM:HOG000213984 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
GeneTree:ENSGT00510000047706 EMBL:X80674 EMBL:Z72585 PIR:S64067
ProteinModelPortal:P53167 SMR:P53167 DIP:DIP-5022N MINT:MINT-499274
STRING:P53167 EnsemblFungi:YGL063W CYGD:YGL063w OMA:CFISSES
BioCyc:MetaCyc:MONOMER-16706 NextBio:972357 Genevestigator:P53167
GermOnline:YGL063W Uniprot:P53167
Length = 370
Score = 113 (44.8 bits), Expect = 5.2e-10, Sum P(3) = 5.2e-10
Identities = 34/119 (28%), Positives = 59/119 (49%)
Query: 237 LSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGS 296
L A E+A +++VG H+F NF + +RH+ +S + +C ++I G
Sbjct: 200 LDAFEAAMQEYVGTHNFHNFTTGKLWGDPSAQRHIKKVVVSQASPGW----IC-VRIHGQ 254
Query: 297 AFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355
+F+ HQ+R MVA+ + + +++ + N PRK AP L+L+ FDG
Sbjct: 255 SFMLHQIRRMVALAVLAARCQLPPNIVRNYF--NAGPRK-YIPRAPAQGLLLEGPVFDG 310
Score = 84 (34.6 bits), Expect = 5.2e-10, Sum P(3) = 5.2e-10
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 190 DYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKY 228
D V LN LP +IRV G P F+AR +C SR Y+Y
Sbjct: 75 DTVAKLNAALPPEIRVWGIQPVNKKFNARSACDSRWYQY 113
Score = 55 (24.4 bits), Expect = 5.2e-10, Sum P(3) = 5.2e-10
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 100 YFGQRFYGFASDGNMEPTVESEIFKALEKTRLL-----VADKKESHYSRCGRTDKGVSSV 154
Y G +YG + + T+E EI L + +A KK S + RTDKGV ++
Sbjct: 5 YCGSGYYGMQYNPPHK-TIEGEILTKLFDVGAISEENSLAPKKNS-FMAAARTDKGVHAM 62
Query: 155 GQVIAI 160
++++
Sbjct: 63 LNLLSL 68
>DICTYBASE|DDB_G0281619 [details] [associations]
symbol:DDB_G0281619 "tRNA pseudouridine synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0281619
GO:GO:0003723 EMBL:AAFI02000042 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 ProtClustDB:CLSZ2846682
RefSeq:XP_640538.1 ProteinModelPortal:Q54TQ3
EnsemblProtists:DDB0304450 GeneID:8623148 KEGG:ddi:DDB_G0281619
InParanoid:Q54TQ3 OMA:FINGHIA Uniprot:Q54TQ3
Length = 504
Score = 137 (53.3 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 53/190 (27%), Positives = 84/190 (44%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKT-RLL---VADKKESHYSRCG 145
K VA+ Y G +YG +++ P++E+ I K L + +L V + K +S
Sbjct: 88 KLSVAMVFGYDGTGYYGLGYQVDIKYPSIENLIEKVLFRCGHILPSNVGELKRLKWSHSS 147
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTDKGV S+ VI+ +L + + NT + +T ++ +N LP IR+
Sbjct: 148 RTDKGVHSLATVISCFL---VVDDNTFKNDINQT-----------FIDTINNYLPSSIRL 193
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLN---LSAMESAGKKFVGEHDFRNFC-KMDA 261
F AR I R Y Y E LN + M + F+G + + NF K +
Sbjct: 194 FSACKVSRSFQARKKGIERSYNYMVPSEYLNNIKIDEMNKILQNFIGINSYHNFTSKRNT 253
Query: 262 -ANVHNYKRH 270
+ +N K H
Sbjct: 254 YLSNNNNKNH 263
Score = 80 (33.2 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 24/86 (27%), Positives = 39/86 (45%)
Query: 269 RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLD 328
R++ SF + I +G I G +F+ +Q+R MV I +G +++ +E L
Sbjct: 311 RNIKSFYVENEIIEIKGKGWYKFVIIGESFILYQIRRMVGFFLSIVKGYSTVEALELSLK 370
Query: 329 TNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ P AP PL L + FD
Sbjct: 371 S---PFSICVPTAPPFPLYLFNVKFD 393
>POMBASE|SPCC126.03 [details] [associations]
symbol:pus1 "tRNA pseudouridine synthase Lsp1"
species:4896 "Schizosaccharomyces pombe" [GO:0001522 "pseudouridine
synthesis" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IGI;IDA] [GO:0006400 "tRNA
modification" evidence=IDA] [GO:0009982 "pseudouridine synthase
activity" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PomBase:SPCC126.03 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003723 GO:GO:0006400
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 EMBL:AJ251329
PIR:T40907 RefSeq:NP_588446.1 ProteinModelPortal:O94396
STRING:O94396 EnsemblFungi:SPCC126.03.1 GeneID:2539082
KEGG:spo:SPCC126.03 eggNOG:COG0101 HOGENOM:HOG000213984 KO:K06173
OMA:IRKMISM OrthoDB:EOG48KVMJ NextBio:20800254 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
Uniprot:O94396
Length = 534
Score = 111 (44.1 bits), Expect = 8.6e-10, Sum P(3) = 8.6e-10
Identities = 29/111 (26%), Positives = 55/111 (49%)
Query: 237 LSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGS 296
LS + ++VG H+F NF A + N R + SF S ++ + + + K+ G
Sbjct: 321 LSVIRETLNQYVGVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGD-TEWISCKVHGQ 379
Query: 297 AFLWHQVRCMVAV-LFMIGQGLESIDVIESLLDTN-GIPRKPQYNMAPEIP 345
+F+ HQ+R M+A+ + ++ G + ++ T IP+ P + + E P
Sbjct: 380 SFMLHQIRKMIALAILVVRTGCPVERIQDAFKKTKINIPKGPGFGLLLESP 430
Score = 92 (37.4 bits), Expect = 8.6e-10, Sum P(3) = 8.6e-10
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA----DKKESHYSRCGR 146
KR VA V Y G ++G + + T+E ++F A K + + D K+ +R R
Sbjct: 43 KRKVACLVGYCGSGYHGMQLNPPSK-TIEGDLFDAFVKAGAVSSYNADDPKKVALARAAR 101
Query: 147 TDKGVSSVGQVIAIYL 162
TDKGV + G VI++ L
Sbjct: 102 TDKGVHAAGNVISLKL 117
Score = 54 (24.1 bits), Expect = 8.6e-10, Sum P(3) = 8.6e-10
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSPAPT--DFSARFSCISREYKY 228
+EDE + +N LP IR+ W T F+ R C SR Y+Y
Sbjct: 119 MEDE-KLIEKVNEHLPPSIRL--WDVIRTINSFNPRTYCESRIYEY 161
>DICTYBASE|DDB_G0286567 [details] [associations]
symbol:DDB_G0286567 species:44689 "Dictyostelium
discoideum" [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0286567 GO:GO:0003723 EMBL:AAFI02000089
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
RefSeq:XP_637536.1 ProteinModelPortal:Q54LM5
EnsemblProtists:DDB0187011 GeneID:8625675 KEGG:ddi:DDB_G0286567
InParanoid:Q54LM5 ProtClustDB:CLSZ2846682 Uniprot:Q54LM5
Length = 615
Score = 149 (57.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 53/174 (30%), Positives = 82/174 (47%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLL----VADKKESHYSRCG 145
K+ +AL Y G ++YG + ++ P +E+ I K+L + + + + K SR
Sbjct: 147 KKPMALCFAYNGSKYYGSSYSFDIRFPAIENLIEKSLIRNGHIALENIGNLKRIKLSRSS 206
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTDKGV SV VI+ +L + KE A G Q ++ +NR LP DIR+
Sbjct: 207 RTDKGVHSVSTVISAFLLID-KETE-RLAQFGTPPQY--------FIDNINRYLPSDIRL 256
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENL---NLSAMESAGKKFVGEHDFRNF 256
I + F AR + SR Y Y ++L ++ M S F+G F N+
Sbjct: 257 ISATKPSRTFRARPASKSRVYNYLVPMDHLKDISIDRMNSILSNFIGTSSFHNY 310
Score = 67 (28.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 23/86 (26%), Positives = 40/86 (46%)
Query: 269 RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES-IDVIESLL 327
R + +F + + FEG Q + G +FL +Q+R M+ + +G ++ I + SL
Sbjct: 396 RTIMNFYVEKETVLFEGKQWYRFVVVGDSFLMYQIRKMMGFFLSVVKGYQNEIGLQLSLK 455
Query: 328 DTNGIPRKPQYNMAPEIPLVLQSCDF 353
I P ++P PL L +F
Sbjct: 456 SPFSIC-SP---ISPPFPLFLYDVNF 477
>SGD|S000006133 [details] [associations]
symbol:PUS1 "tRNA:pseudouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IPI]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA;IDA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IDA]
[GO:0031120 "snRNA pseudouridine synthesis" evidence=IMP]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009451 "RNA modification" evidence=IEA]
[GO:0016853 "isomerase activity" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 SGD:S000006133 GO:GO:0005634
GO:GO:0003723 EMBL:BK006949 GO:GO:0009982 SUPFAM:SSF55120
GO:GO:0031120 GO:GO:0031119 eggNOG:COG0101 HOGENOM:HOG000213984
KO:K06173 OrthoDB:EOG48KVMJ Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 EMBL:X80673 EMBL:Z73568
PIR:S65231 RefSeq:NP_015112.1 ProteinModelPortal:Q12211
DIP:DIP-5344N IntAct:Q12211 MINT:MINT-513680 STRING:Q12211
PaxDb:Q12211 PeptideAtlas:Q12211 EnsemblFungi:YPL212C GeneID:855889
KEGG:sce:YPL212C CYGD:YPL212c GeneTree:ENSGT00510000047706
OMA:TEWISIT NextBio:980559 Genevestigator:Q12211 GermOnline:YPL212C
Uniprot:Q12211
Length = 544
Score = 101 (40.6 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK----KESHYSRCGR 146
KR VA+ V Y G ++G + PT+ES +FKA + + D K++ + R R
Sbjct: 74 KRKVAVMVGYCGTGYHGMQYNPP-NPTIESALFKAFVEAGAISKDNSNDLKKNGFMRAAR 132
Query: 147 TDKGVSSVGQVIAI 160
TDKGV + G +I++
Sbjct: 133 TDKGVHAGGNLISL 146
Score = 95 (38.5 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 30/114 (26%), Positives = 53/114 (46%)
Query: 237 LSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEIS-PCYISFEGNQLCAIKIRG 295
L+ ++ +++G H+F NF + R + ++S P I + +IKI G
Sbjct: 294 LAKFRASTSQYLGAHNFHNFTLGKDFKEPSAIRFMKDIKVSDPFVIGDAQTEWISIKIHG 353
Query: 296 SAFLWHQVRCMVAVLFMI---GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPL 346
+F+ HQ+R MV++ +I G +E I N IP+ P + E P+
Sbjct: 354 QSFMLHQIRKMVSMATLITRCGCPVERISQAYGQQKIN-IPKAPALGLLLEAPV 406
Score = 61 (26.5 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 177 GETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKY 228
G + + I ++ D + +N LP+ IRV F R C SR Y+Y
Sbjct: 141 GNLISLKMIIEDPDIKQKINEKLPEGIRVWDIERVNKAFDCRKMCSSRWYEY 192
>POMBASE|SPBC887.11 [details] [associations]
symbol:pus2 "tRNA pseudouridine synthase Pus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0009982 "pseudouridine synthase activity" evidence=ISO]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PomBase:SPBC887.11 GO:GO:0005634
GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 KO:K15452
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 TIGRFAMs:TIGR00071 PIR:T40736 RefSeq:NP_596485.1
ProteinModelPortal:O94295 EnsemblFungi:SPBC887.11.1 GeneID:2541236
KEGG:spo:SPBC887.11 OrthoDB:EOG4M952K NextBio:20802348
Uniprot:O94295
Length = 451
Score = 107 (42.7 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 29/107 (27%), Positives = 54/107 (50%)
Query: 226 YKYFFWR-ENLNLSAMESAGKKFVGEHDFRNFCKMD-AANVHNYKRHVTSFEISPCYISF 283
Y Y +R + L ++ KK+ G H+F NF D + + NY R + S ++ +
Sbjct: 262 YCYMNYRIKEDRLKVLQQLLKKYEGRHNFHNFTVTDDSTSPSNY-RFIESVTCGTPFV-Y 319
Query: 284 EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
E + + I+G++F+ +Q+R M+A + MI + +I+ D N
Sbjct: 320 ENWEWIPVTIKGNSFMLNQIRKMMAHVLMIIRSCAPTGLIDKAFDPN 366
Score = 75 (31.5 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 19/36 (52%), Positives = 21/36 (58%)
Query: 195 LNRVLPKDIRVIGWS--PAPTDFSARFSCISREYKY 228
LN L IRV WS PAP F+ R SC SR Y+Y
Sbjct: 126 LNEALCSQIRV--WSVFPAPKYFNPRISCESRTYEY 159
Score = 69 (29.3 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 17/66 (25%), Positives = 36/66 (54%)
Query: 100 YFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY---SRCGRTDKGVSSVGQ 156
Y G ++G + ++ T+E ++ L+K L + ++ + +R RTDKGV ++
Sbjct: 47 YSGYGYHGIQINNPLK-TIEGDVVAVLKKLGYLKTNNIDAEHLCIARAARTDKGVHTLRN 105
Query: 157 VIAIYL 162
+I++ L
Sbjct: 106 LISLNL 111
Score = 39 (18.8 bits), Expect = 1.9e-06, Sum P(3) = 1.9e-06
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 19 LQNRVKELEADNAKLLSKLSLCRCEKIE 46
+ N +K +E D +L KL + I+
Sbjct: 57 INNPLKTIEGDVVAVLKKLGYLKTNNID 84
>UNIPROTKB|Q9KTA4 [details] [associations]
symbol:truA "tRNA pseudouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 124 (48.7 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 46/167 (27%), Positives = 78/167 (46%)
Query: 178 ETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA-PTDFSARFSCISREYKYFFWRE--- 233
+T E Q+ + + N LPKDI V W+ A P +F ARFS +R Y+Y +
Sbjct: 64 DTTAERQM---VAWTMGANANLPKDIAV-RWAMAVPDEFHARFSATARRYRYVIYNHVYR 119
Query: 234 -------------NLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCY 280
L++ M+ AG+ +GE+DF +F + + + R+V ++
Sbjct: 120 PGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPW-RNVMHLNVTR-- 176
Query: 281 ISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLL 327
G + I I+ +AF+ H VR + L +G+G + + I+ LL
Sbjct: 177 ---HGRYV-VIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLL 219
Score = 73 (30.8 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
+AL + Y G +YG+ ++ +V+ + KAL K +A+ +C GRTD GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREVK-SVQEALEKALSK----IANHPVE--VQCAGRTDAGVH 55
Query: 153 SVGQVI 158
GQV+
Sbjct: 56 GTGQVV 61
>TIGR_CMR|VC_0999 [details] [associations]
symbol:VC_0999 "tRNA pseudouridine synthase A" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0009982 "pseudouridine synthase activity"
evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006400 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 PIR:A82253
RefSeq:NP_230645.1 ProteinModelPortal:Q9KTA4 SMR:Q9KTA4
DNASU:2614252 GeneID:2614252 KEGG:vch:VC0999 PATRIC:20081098
OMA:GKSFLWE Uniprot:Q9KTA4
Length = 264
Score = 124 (48.7 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 46/167 (27%), Positives = 78/167 (46%)
Query: 178 ETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA-PTDFSARFSCISREYKYFFWRE--- 233
+T E Q+ + + N LPKDI V W+ A P +F ARFS +R Y+Y +
Sbjct: 64 DTTAERQM---VAWTMGANANLPKDIAV-RWAMAVPDEFHARFSATARRYRYVIYNHVYR 119
Query: 234 -------------NLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCY 280
L++ M+ AG+ +GE+DF +F + + + R+V ++
Sbjct: 120 PGILNSGVSHYHGELDVEKMQQAGQYLLGENDFTSFRAVHCQSRSPW-RNVMHLNVTR-- 176
Query: 281 ISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLL 327
G + I I+ +AF+ H VR + L +G+G + + I+ LL
Sbjct: 177 ---HGRYV-VIDIKANAFVHHMVRNITGSLIAVGRGEQKPEWIQWLL 219
Score = 73 (30.8 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
+AL + Y G +YG+ ++ +V+ + KAL K +A+ +C GRTD GV
Sbjct: 3 IALGIEYDGTHYYGWQRQREVK-SVQEALEKALSK----IANHPVE--VQCAGRTDAGVH 55
Query: 153 SVGQVI 158
GQV+
Sbjct: 56 GTGQVV 61
>UNIPROTKB|F5H1S9 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AC131009 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1
IPI:IPI00795171 ProteinModelPortal:F5H1S9 SMR:F5H1S9 PRIDE:F5H1S9
Ensembl:ENST00000542167 UCSC:uc001uji.3 ArrayExpress:F5H1S9
Bgee:F5H1S9 Uniprot:F5H1S9
Length = 374
Score = 156 (60.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 63/259 (24%), Positives = 114/259 (44%)
Query: 117 TVESEIFKALEKTRLLVA----DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTN 172
T+E ++ AL ++ + D ++ + RC RTDKGVS+ GQV+++ +
Sbjct: 58 TIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVVSLKV---------- 107
Query: 173 NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKY---- 228
+ D+I + +N LP IR++G F+++ C +R Y Y
Sbjct: 108 -----------WLIDDI--LEKINSHLPSHIRILGLKRVTGGFNSKNRCDARTYCYLLPT 154
Query: 229 FFWR--------ENLNLSA--MESAGKK---FVGEHDFRNFCKMDAANVHNYKRHVTSFE 275
F + E LSA ++ + + G H+F NF + R++
Sbjct: 155 FAFAHKDRDVQDETYRLSAETLQQVNRLLACYKGTHNFHNFTSQKGPQDPSACRYILEMY 214
Query: 276 ISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRK 335
++ EG + I+++G +F+ HQ+R MV ++ I +G ES+L+ + K
Sbjct: 215 CEEPFVR-EGLEFAVIRVKGQSFMMHQIRKMVGLVVAIVKGYAP----ESVLERSWGTEK 269
Query: 336 PQYNMAPEIPLVLQSCDFD 354
AP + LVL+ F+
Sbjct: 270 VDVPKAPGLGLVLERVHFE 288
>TIGR_CMR|GSU_2877 [details] [associations]
symbol:GSU_2877 "tRNA pseudouridine synthase A"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 ProtClustDB:PRK00021 HOGENOM:HOG000248673
OMA:TPFRNVH RefSeq:NP_953919.1 ProteinModelPortal:P60350
GeneID:2688667 KEGG:gsu:GSU2877 PATRIC:22028615
BioCyc:GSUL243231:GH27-2866-MONOMER Uniprot:P60350
Length = 244
Score = 137 (53.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 54/176 (30%), Positives = 75/176 (42%)
Query: 195 LNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF--------------W--RENLNLS 238
LN +LP DI V A F+ RF+ + Y+Y W R LNL+
Sbjct: 79 LNALLPPDIAVRSADEALPGFNPRFAATGKHYRYTIHRGERRSPLVRLQSWHVRGALNLA 138
Query: 239 AMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAF 298
AM A + GE DF +F A R V + EIS +G L + + GS F
Sbjct: 139 AMREAARHLTGERDFASFRTAGCA-ARTTIRRVDAVEISD-----DGEML-TVDVHGSGF 191
Query: 299 LWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI-PRKPQYNMAPEIPLVLQSCDF 353
L + VR MV L +G+G + + + ++ G+ P P AP L LQ F
Sbjct: 192 LRNMVRIMVGTLVEVGRGKLTPEHVAQMVVCPGVVPAGPT---APPQGLCLQKVRF 244
Score = 48 (22.0 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G + G+ N +++ + AL RLL K+ GRTD GV
Sbjct: 2 RTIKLILEYDGTNYAGWQLQPN-GLSIQEVVEGAL--ARLL---KEPVRLRASGRTDAGV 55
Query: 152 SSVGQVIA 159
+ G V A
Sbjct: 56 HARGMVAA 63
>DICTYBASE|DDB_G0283061 [details] [associations]
symbol:DDB_G0283061 "tRNA pseudouridine synthase truA
family" species:44689 "Dictyostelium discoideum" [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0009451 "RNA
modification" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0016853
"isomerase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 dictyBase:DDB_G0283061 GO:GO:0003723 EMBL:AAFI02000049
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 KO:K06173 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 RefSeq:XP_639285.1 ProteinModelPortal:Q54RR6
STRING:Q54RR6 EnsemblProtists:DDB0218427 GeneID:8623854
KEGG:ddi:DDB_G0283061 InParanoid:Q54RR6 OMA:SISHIKI
ProtClustDB:CLSZ2728984 Uniprot:Q54RR6
Length = 343
Score = 99 (39.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 285 GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEI 344
G Q I+I+ AFL +QVR MVA L +G+G SI +E + D P +PE
Sbjct: 236 GLQYFGIEIKARAFLHNQVRIMVASLIKVGEGEISIQQLEEIKDKKDRGAAPP-TASPE- 293
Query: 345 PLVLQSCDFDGLK 357
PL L + +D K
Sbjct: 294 PLTLLTVSYDDPK 306
Score = 94 (38.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 49/176 (27%), Positives = 70/176 (39%)
Query: 100 YFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIA 159
Y G+ F GF P V+ + + LE + + K RTD GVS+VGQV
Sbjct: 11 YIGKSFTGFQR--LKYPVVKLPVQQVLEDSLEKIHGYKIPIVGS-SRTDHGVSAVGQVSH 67
Query: 160 IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
++K + + + E++ I+Y V L K IR+I F RF
Sbjct: 68 F----DVKTRTSKSGIEMPLLSPEELTMAINY-NVGKEYL-KSIRIIKTEIVDDKFHCRF 121
Query: 220 SCISREYKYFFW----REN---------------LNLSAMESAGKKFVGEHDFRNF 256
+ SR Y Y R+ LNL M A + F+G HDF +F
Sbjct: 122 NATSRTYLYRVMANCGRKQIPLELLDRVYLVGPILNLDEMRKASEMFIGTHDFSSF 177
>TIGR_CMR|CBU_0892 [details] [associations]
symbol:CBU_0892 "tRNA pseudouridine synthase A"
species:227377 "Coxiella burnetii RSA 493" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 KO:K06173 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 TIGRFAMs:TIGR00071
HOGENOM:HOG000248672 ProtClustDB:PRK00021 OMA:TPFRNVH
RefSeq:YP_338281.1 ProteinModelPortal:Q4AAX9 SMR:Q4AAX9
GeneID:1208785 KEGG:cbu:CBU_0892 PATRIC:17930485
BioCyc:CBUR227377:GJ7S-885-MONOMER Uniprot:Q4AAX9
Length = 261
Score = 121 (47.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 40/149 (26%), Positives = 68/149 (45%)
Query: 196 NRVLPKDIRVIGWSPA-PTDFSARFSCISREYKYFFWREN----------------LNLS 238
N LP DI ++ W+ A DF AR+S ++R Y+Y + L+
Sbjct: 80 NSNLPHDISIL-WAKAVEEDFHARYSAMARRYRYIVYNHEIRPAILRKAIGWHYRPLDEK 138
Query: 239 AMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAF 298
M++ + +GEHDF +F + R + EI + ++ I+++ +AF
Sbjct: 139 RMQAGAQYLIGEHDFSSF-QGAGCQSRTPVRKIFQIEI------YRIRRMVVIEVQANAF 191
Query: 299 LWHQVRCMVAVLFMIGQGLESIDVIESLL 327
L H VR + VL IG G + D +++L
Sbjct: 192 LLHMVRNIAGVLIAIGSGEKHPDWAQTVL 220
Score = 64 (27.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
+AL + Y G ++G+ ++ TV+ E+ KAL VA+ + C GRTD GV
Sbjct: 4 IALGIRYDGSAYHGWQVQEALK-TVQGEVEKALSA----VANHPV--FVTCAGRTDAGVH 56
Query: 153 SVGQV 157
+ QV
Sbjct: 57 ASAQV 61
>WB|WBGene00004248 [details] [associations]
symbol:pus-1 species:6239 "Caenorhabditis elegans"
[GO:0001522 "pseudouridine synthesis" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 EMBL:AL021572 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 GeneTree:ENSGT00510000047706
HOGENOM:HOG000031229 OMA:CDARTYF UniGene:Cel.1992 GeneID:180123
KEGG:cel:CELE_W06H3.2 UCSC:W06H3.2a CTD:180123 NextBio:908172
PIR:T26253 RefSeq:NP_507242.1 ProteinModelPortal:Q9XXN0 SMR:Q9XXN0
STRING:Q9XXN0 PRIDE:Q9XXN0 EnsemblMetazoa:W06H3.2a.1
EnsemblMetazoa:W06H3.2a.2 WormBase:W06H3.2a InParanoid:Q9XXN0
ArrayExpress:Q9XXN0 Uniprot:Q9XXN0
Length = 415
Score = 149 (57.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 61/272 (22%), Positives = 123/272 (45%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKES----HYSRCGRTDKG 150
A+ + Y G+++YG ++ PT+ES++ +A+E + +KE + R RTD+
Sbjct: 36 AMLLGYQGKKYYGMQLQKDL-PTIESKLLEAMETAGWITTAQKEKPFDFFFQRAARTDRA 94
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPK---DIRVIG 207
VS+ Q+ + L + + A + + I R N P+ D R
Sbjct: 95 VSAARQMCGMQLPRDDAKYQAEGAGILNNILPADIR-VFGMRRTTNFFHPQKQCDHRTYS 153
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNY 267
++ P+ A+ + ++ F L+ + S ++G H+F N+ A + +
Sbjct: 154 YT-CPSFVFAKPTELTNSS---FRLSPETLAEVNSILSIYLGTHNFFNYTAKRAYDDMSS 209
Query: 268 KRHVTSFEISPCYI---SF--EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322
R++ SFE ++ F E + I I+G +F+ HQ+R MV ++ + + L
Sbjct: 210 NRYIISFECKEPFLFRDDFRKEDVEFVQIVIKGQSFVLHQIRKMVGMVITVIRELH---- 265
Query: 323 IESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
++S + + ++ MAP + L+L+ +D
Sbjct: 266 LKSSIQRSFEGQRMDIPMAPGLGLLLERTHYD 297
>TIGR_CMR|NSE_0020 [details] [associations]
symbol:NSE_0020 "tRNA pseudouridine synthase A"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
RefSeq:YP_505923.1 ProteinModelPortal:Q2GF33 STRING:Q2GF33
GeneID:3932291 KEGG:nse:NSE_0020 PATRIC:22680151
ProtClustDB:CLSK2528006 BioCyc:NSEN222891:GHFU-58-MONOMER
Uniprot:Q2GF33
Length = 243
Score = 137 (53.3 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 75/278 (26%), Positives = 114/278 (41%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ V Y G F G+ + P+V+ E+ L L+ +K + + GRTD GV
Sbjct: 2 RYKAI-VEYVGTGFSGWQKQMSA-PSVQEELESVLS---FLLKEKIAVNVA--GRTDAGV 54
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++GQV R + T+Q QI + ++Y ++ I ++ +
Sbjct: 55 HALGQVFHFDARES-------------TLQPFQIVNAVNYHLKEKLIVLLKIEIVDET-- 99
Query: 212 PTDFSARFSCISREYKY----------FF----WR--ENLNLSAMESAGKKFVGEHDFRN 255
F ARFS I R Y+Y F W + LNL + + VG+HDF++
Sbjct: 100 ---FDARFSAIRRHYQYKITNRKTPLAVFKNRSWHVPQTLNLDLIREQAQYLVGKHDFQS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F + N R + E+ G ++ +FL HQVR MV L I
Sbjct: 157 F-RSSKCGASNAIRTLDRLEVEK-----NGEEMI-FHASAKSFLHHQVRIMVGTLVAIAS 209
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G + + V E L N R+ AP L L D+
Sbjct: 210 G-KLMSVTEILSKKN---RRYAGPTAPPCGLYLLKVDY 243
>MGI|MGI:3047787 [details] [associations]
symbol:Pusl1 "pseudouridylate synthase-like 1" species:10090
"Mus musculus" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 MGI:MGI:3047787 GO:GO:0003723 GO:GO:0008033
EMBL:AL670236 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
UniGene:Mm.259270 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 CTD:126789
HOGENOM:HOG000248674 HOVERGEN:HBG053770 OMA:WALPADC
OrthoDB:EOG4P5K9S EMBL:AK151452 EMBL:AK160236 IPI:IPI00458175
IPI:IPI00626517 IPI:IPI00875388 RefSeq:NP_001028662.1
ProteinModelPortal:A2ADA5 SMR:A2ADA5 STRING:A2ADA5
PhosphoSite:A2ADA5 PaxDb:A2ADA5 PRIDE:A2ADA5
Ensembl:ENSMUST00000097737 GeneID:433813 KEGG:mmu:433813
UCSC:uc008wfi.1 UCSC:uc012drb.1 GeneTree:ENSGT00510000048520
InParanoid:A2ADA5 NextBio:409016 Bgee:A2ADA5 Genevestigator:A2ADA5
Uniprot:A2ADA5
Length = 291
Score = 124 (48.7 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 38/129 (29%), Positives = 66/129 (51%)
Query: 233 ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPC----YISFEGN-- 286
E L+++AM+ A + +G HDF F + + V N R + +SP ++ EG+
Sbjct: 158 EYLDMAAMQEAAQHLLGTHDFSAF-QSAGSPVTNTVRTLRRVSVSPGPASPFVLPEGSRR 216
Query: 287 -QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIP 345
Q ++ +FL+ QVR M AVL +G G+ + ++ +L++ K Q +AP
Sbjct: 217 LQFWTLEFESQSFLYRQVRRMTAVLVAVGLGILAPTQVKVILESQDPLGKYQARVAPARG 276
Query: 346 LVLQSCDFD 354
L L+S +D
Sbjct: 277 LFLKSVLYD 285
Score = 55 (24.4 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 203 IRVIGWSPAPTDFSARFSCISREYKY 228
IRV+ P DF AR + SR Y+Y
Sbjct: 107 IRVLKAFRVPNDFHARHAATSRTYQY 132
>DICTYBASE|DDB_G0290987 [details] [associations]
symbol:pus1 "tRNA pseudouridylate synthase"
species:44689 "Dictyostelium discoideum" [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0009451 "RNA modification"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 dictyBase:DDB_G0290987
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 EMBL:AAFI02000174 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 RefSeq:XP_635437.1 ProteinModelPortal:Q54FA0
EnsemblProtists:DDB0231224 GeneID:8627937 KEGG:ddi:DDB_G0290987
InParanoid:Q54FA0 OMA:VEMVSIN Uniprot:Q54FA0
Length = 596
Score = 142 (55.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 65/266 (24%), Positives = 119/266 (44%)
Query: 85 TLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD----KKESH 140
T + K+ VA+ + Y G + G + ++ TVE E+ AL +T + D +++
Sbjct: 133 TTDESRKKKVAIILGYSGTNYAGMQKNPGLK-TVEEELEHALFRTGGISPDNMYYQQKVD 191
Query: 141 YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLP 200
+ RC RTDKGVS++ V+++ + + ++ + + ++ I +RV N
Sbjct: 192 WIRCARTDKGVSAIRNVVSLKMEMGPPDFEGMKIALNKELPKDITVFHI--MRVNNSFHA 249
Query: 201 K---DIRVIGWSPAPTD-FSARFS----CISREYKYFF-------WRENLN-LSAMESAG 244
K D R + PT F +FS I E W+ + LS +
Sbjct: 250 KNAVDARSYIYV-TPTHVFEPKFSKKNKSIVEEAANGGENNTQPPWKFTSDTLSILNKVL 308
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
++G H F N+ +N + R + SF S ++ EG ++ +I + G +F+ HQ+R
Sbjct: 309 SFYLGNHRFHNYTSRKESNDVSVFRKIHSFVCSEPFV-LEGVEMVSINVVGESFMLHQIR 367
Query: 305 CMVAVLF-MIGQGL-ESIDVIESLLD 328
M+ L I +G+ E + + D
Sbjct: 368 KMIGCLISFIRKGMFEDCETRDQAFD 393
>UNIPROTKB|E9PNY6 [details] [associations]
symbol:PUS3 "tRNA pseudouridine(38/39) synthase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0031119 "tRNA pseudouridine synthesis" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020103
GO:GO:0003723 GO:GO:0009982 SUPFAM:SSF55120 EMBL:AP000842
GO:GO:0031119 Gene3D:3.30.70.580 PANTHER:PTHR11142 HGNC:HGNC:25461
IPI:IPI00982332 ProteinModelPortal:E9PNY6 SMR:E9PNY6
Ensembl:ENST00000529801 ArrayExpress:E9PNY6 Bgee:E9PNY6
Uniprot:E9PNY6
Length = 105
Score = 115 (45.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 28/92 (30%), Positives = 46/92 (50%)
Query: 43 EKIEDKVHDGVEDGTTLVEENRKT--ESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMY 100
EK+ +V + ++ L +E K +S + H +R+VAL++ Y
Sbjct: 12 EKLLKRVRELEQEVQRLKKEQAKNKEDSNIRENSAGAGKTKRAFDFSAHGRRHVALRIAY 71
Query: 101 FGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
G + GFAS N T+E ++F+AL KTRL+
Sbjct: 72 MGWGYQGFASQENTNNTIEEKLFEALTKTRLV 103
>TIGR_CMR|DET_0504 [details] [associations]
symbol:DET_0504 "tRNA pseudouridine synthase A"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0009982 "pseudouridine synthase
activity" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016829 GO:GO:0009982
SUPFAM:SSF55120 GO:GO:0031119 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248673 OMA:YSINANR
RefSeq:YP_181248.1 ProteinModelPortal:Q3Z951 STRING:Q3Z951
GeneID:3230211 KEGG:det:DET0504 PATRIC:21608077
ProtClustDB:CLSK837466 BioCyc:DETH243164:GJNF-504-MONOMER
Uniprot:Q3Z951
Length = 248
Score = 131 (51.2 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 72/262 (27%), Positives = 108/262 (41%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ GF + T++ E+ A+ K L ++ ++ S GRTD GV +
Sbjct: 3 LVIEYEGTRYSGFQVQ-DKGATIQGELETAIRK---LTSE--QTRVSGSGRTDAGVHAAY 56
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRV-LNRVLPKDIRVIGWSPAPTD 214
QV++ YL + +S+G +D ++ LN LP DI V
Sbjct: 57 QVVS-YL---------SESSLG-----------LDKIKGGLNFYLPPDIAVKEVHFVAES 95
Query: 215 FSARFSCISREYKYFF--------------WRE--NLNLSAMESAGKKFVGEHDFRNFCK 258
F R ISREY Y W+ L++ ME A K GEHDF F
Sbjct: 96 FDVRRRAISREYSYQILNSKTRSPLARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFAS 155
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ R V + ++L I ++FL HQVR + L +G+G
Sbjct: 156 SLGPEIKKTVRRVNWTRLG-----IREDRLI-FNIEANSFLTHQVRNTIGTLVELGRGTM 209
Query: 319 SIDVIESLLD--TNGI--PRKP 336
S+ E+L + T G+ P P
Sbjct: 210 SMSEFEALFEAKTPGLAGPAAP 231
>UNIPROTKB|F5GY32 [details] [associations]
symbol:PUS1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005667 "transcription factor
complex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0030374 "ligand-dependent nuclear receptor transcription
coactivator activity" evidence=IEA] [GO:0031119 "tRNA pseudouridine
synthesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 GO:GO:0005730 GO:GO:0003677
GO:GO:0045944 GO:GO:0003723 GO:GO:0005667 GO:GO:0030374
GO:GO:0009982 SUPFAM:SSF55120 GO:GO:0031119 EMBL:AC131009
Gene3D:3.30.70.580 PANTHER:PTHR11142 HGNC:HGNC:15508 ChiTaRS:PUS1
IPI:IPI01009368 ProteinModelPortal:F5GY32 SMR:F5GY32
Ensembl:ENST00000538037 ArrayExpress:F5GY32 Bgee:F5GY32
Uniprot:F5GY32
Length = 154
Score = 109 (43.4 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 27/86 (31%), Positives = 50/86 (58%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL ++ + D ++ + RC
Sbjct: 55 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRC 114
Query: 145 GRTDKGVSSVGQVIA--IYLRSNIKE 168
RTDKGVS+ GQV++ ++L +I E
Sbjct: 115 ARTDKGVSAAGQVVSLKVWLIDDILE 140
Score = 38 (18.4 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 190 DYVRVLNRVLPKDIRVIG 207
D + +N LP IR++G
Sbjct: 137 DILEKINSHLPSHIRILG 154
>UNIPROTKB|A6QP68 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9913
"Bos taurus" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
eggNOG:COG0101 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 HOGENOM:HOG000248674 HOVERGEN:HBG053770
OMA:WALPADC OrthoDB:EOG4P5K9S GeneTree:ENSGT00510000048520
EMBL:DAAA02043243 EMBL:BC149176 IPI:IPI00698369 UniGene:Bt.62155
STRING:A6QP68 Ensembl:ENSBTAT00000044945 InParanoid:A6QP68
Uniprot:A6QP68
Length = 312
Score = 120 (47.3 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 38/128 (29%), Positives = 65/128 (50%)
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDA---ANVHNYKR-HVTSFEISPCYISFEGNQL-- 288
L+++AM+ A + +G HDF F + + V +R V+ SP + E QL
Sbjct: 181 LDVAAMQEAAQHLLGTHDFSAFQSAGSPASSPVRTLRRASVSPDPASPFVLPEESRQLQF 240
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
+++ +FL+ QVR M AVL +G G ++++L++ K Q +AP L L
Sbjct: 241 WSMEFESQSFLYKQVRRMTAVLVAVGLGALMPAQVKAILESRDPLGKHQSRVAPAHGLFL 300
Query: 349 QSCDFDGL 356
+S ++GL
Sbjct: 301 KSVLYEGL 308
Score = 51 (23.0 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 203 IRVIGWSPAPTDFSARFSCISREYKY 228
IRV+ P+ F AR + ISR Y Y
Sbjct: 128 IRVLQAFRVPSHFHARHAAISRTYLY 153
>POMBASE|SPCC16C4.06c [details] [associations]
symbol:SPCC16C4.06c "tRNA pseudouridine synthase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0001522
"pseudouridine synthesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0009982 "pseudouridine synthase activity"
evidence=ISO] [GO:0016829 "lyase activity" evidence=IEA]
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PomBase:SPCC16C4.06c GO:GO:0005634 GO:GO:0005737 EMBL:CU329672
GO:GO:0003723 GO:GO:0006400 GO:GO:0016829 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 OMA:CFISSES PIR:T41096 RefSeq:NP_587916.1
ProteinModelPortal:O74451 EnsemblFungi:SPCC16C4.06c.1
GeneID:2539359 KEGG:spo:SPCC16C4.06c NextBio:20800524
Uniprot:O74451
Length = 413
Score = 81 (33.6 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 24/79 (30%), Positives = 39/79 (49%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV---ADK-KESHYSRCGR 146
KR V V Y G F G + N++ T++ +F+A + +V AD K+ R
Sbjct: 36 KRMVYCVVSYRGTGFAGLQYNANVK-TIQDTLFQAFARVGAVVQVNADSPKKIRMCSAAR 94
Query: 147 TDKGVSSVGQVIAIYLRSN 165
TDKGV ++ V+ + + N
Sbjct: 95 TDKGVHAIVNVLGLKVLDN 113
Score = 74 (31.1 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 29/141 (20%), Positives = 55/141 (39%)
Query: 221 CISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCY 280
C++ F L ++ A F G H F ++ + + +R + + +
Sbjct: 201 CVANSLSEPFRLSKPKLDFLKHACTMFRGTHRFHSYTTEKGFSDASSRRFLLDVRVDNLH 260
Query: 281 ISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNM 340
I Q + G +F+ HQ+R MV +L + + + V+ + + + R P+
Sbjct: 261 IDKLNRQWVKLIFHGQSFMKHQIRKMVGILIHLTRTGWNAQVLLNTFNNSYRIRIPR--- 317
Query: 341 APEIPLVLQSCDFDGLKFTCS 361
AP L+L F CS
Sbjct: 318 APAEFLLLNQPIFQAFNKKCS 338
Score = 61 (26.5 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 192 VRVLNRVLPKDIRVIGWSPAPT--DFSARFSCISREYKYF 229
V ++N +LP IRV W A T FS C SR Y+Y+
Sbjct: 120 VNLVNDILPPCIRV--WKMARTFNSFSPHTVCDSRVYEYW 157
>TIGR_CMR|SPO_3143 [details] [associations]
symbol:SPO_3143 "tRNA pseudouridine synthase A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101 KO:K06173
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
TIGRFAMs:TIGR00071 HOGENOM:HOG000248672 OMA:RHYRYRI
ProtClustDB:PRK00021 RefSeq:YP_168346.1 ProteinModelPortal:Q5LNR0
GeneID:3193303 KEGG:sil:SPO3143 PATRIC:23379731 Uniprot:Q5LNR0
Length = 262
Score = 122 (48.0 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 61/253 (24%), Positives = 104/253 (41%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY ALKV Y G F G+ ++ P+V+ I AL RL + + GRTD GV
Sbjct: 3 RY-ALKVEYLGTPFAGWQRQKDL-PSVQGAIETAL--ARL---EPGPHTIAAAGRTDAGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+GQV C+ + ++ + ++Y + P+ + + +
Sbjct: 56 HGLGQVA---------HCD-----LTRDWDPFRLSEALNY-----HLKPQPVAITAAARV 96
Query: 212 PTDFSARFSCISREYKY--------------FFWR--ENLNLSAMESAGKKFVGEHDFRN 255
D+ ARFS R+Y + W+ L+ AM++A +G HDF
Sbjct: 97 AEDWHARFSATERQYLFRLLMRRAPATHDAGLVWQVGHRLDARAMQAAADLLLGRHDFTT 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F + + + + + SF G ++ +R +FL +QVR V L +G
Sbjct: 157 F-RSSICQAASPVKTLDELRVEAVE-SFSGPEI-RFHVRARSFLHNQVRSFVGTLERVGA 213
Query: 316 GLESIDVIESLLD 328
G + + + S L+
Sbjct: 214 GAWAPEDVRSALE 226
>UNIPROTKB|Q8N0Z8 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase-like 1"
species:9606 "Homo sapiens" [GO:0001522 "pseudouridine synthesis"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0009982
"pseudouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001406 InterPro:IPR020094
InterPro:IPR020095 InterPro:IPR020097 InterPro:IPR020103
Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723 EMBL:AL139287
EMBL:CH471183 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 eggNOG:COG0101 Gene3D:3.30.70.580
Gene3D:3.30.70.660 PANTHER:PTHR11142 EMBL:AK075292 EMBL:AK298218
EMBL:BC034304 IPI:IPI00166125 IPI:IPI00915388 RefSeq:NP_699170.1
UniGene:Hs.400659 ProteinModelPortal:Q8N0Z8 SMR:Q8N0Z8
STRING:Q8N0Z8 PhosphoSite:Q8N0Z8 DMDM:52783232 PRIDE:Q8N0Z8
DNASU:126789 Ensembl:ENST00000379031 GeneID:126789 KEGG:hsa:126789
UCSC:uc001aed.3 UCSC:uc010nyi.2 CTD:126789 GeneCards:GC01P001233
HGNC:HGNC:26914 HPA:HPA032057 neXtProt:NX_Q8N0Z8
PharmGKB:PA134947837 HOGENOM:HOG000248674 HOVERGEN:HBG053770
InParanoid:Q8N0Z8 OMA:WALPADC OrthoDB:EOG4P5K9S PhylomeDB:Q8N0Z8
ChiTaRS:PUSL1 GenomeRNAi:126789 NextBio:81916 Bgee:Q8N0Z8
CleanEx:HS_PUSL1 Genevestigator:Q8N0Z8 GermOnline:ENSG00000169972
Uniprot:Q8N0Z8
Length = 303
Score = 110 (43.8 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 38/135 (28%), Positives = 66/135 (48%)
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDA---ANVHNYKR-HVTSFEISPCYISFEGNQL-- 288
L++ AM+ A + +G HDF F + + V +R V+ + SP E +L
Sbjct: 160 LDMVAMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPGQASPLVTPEESRKLRF 219
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
++ +FL+ QVR M AVL +G G + ++++L++ K Q +AP L L
Sbjct: 220 WNLEFESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFL 279
Query: 349 QSCDFDGL-KFTCSL 362
+S + L +C+L
Sbjct: 280 KSVLYGNLGAASCTL 294
Score = 53 (23.7 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 203 IRVIGWSPAPTDFSARFSCISREYKY 228
IRV+ P+DF AR + SR Y Y
Sbjct: 107 IRVLRAFRVPSDFHARHAATSRTYLY 132
>UNIPROTKB|J3KTG4 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9606
"Homo sapiens" [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009982 "pseudouridine
synthase activity" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] InterPro:IPR001406 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416 GO:GO:0003723
EMBL:AL139287 GO:GO:0008033 GO:GO:0009982 GO:GO:0001522
SUPFAM:SSF55120 Gene3D:3.30.70.660 PANTHER:PTHR11142
HGNC:HGNC:26914 ChiTaRS:PUSL1 Ensembl:ENST00000467712
Uniprot:J3KTG4
Length = 126
Score = 102 (41.0 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 35/124 (28%), Positives = 59/124 (47%)
Query: 239 AMESAGKKFVGEHDFRNFCKMDA---ANVHNYKR-HVTSFEISPCYISFEGNQL--CAIK 292
AM+ A + +G HDF F + + V +R V+ + SP E +L ++
Sbjct: 3 AMQEAAQHLLGTHDFSAFQSAGSPVPSPVRTLRRVSVSPGQASPLVTPEESRKLRFWNLE 62
Query: 293 IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCD 352
+FL+ QVR M AVL +G G + ++++L++ K Q +AP L L+S
Sbjct: 63 FESQSFLYRQVRRMTAVLVAVGLGALAPAQVKTILESQDPLGKHQTRVAPAHGLFLKSVL 122
Query: 353 FDGL 356
+ L
Sbjct: 123 YGNL 126
>UNIPROTKB|F1RJE9 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9823
"Sus scrofa" [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0009982 "pseudouridine synthase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0001522 "pseudouridine
synthesis" evidence=IEA] HAMAP:MF_00171 InterPro:IPR001406
InterPro:IPR020094 InterPro:IPR020095 InterPro:IPR020097
InterPro:IPR020103 Pfam:PF01416 PIRSF:PIRSF001430 GO:GO:0003723
GO:GO:0008033 GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142 OMA:WALPADC
GeneTree:ENSGT00510000048520 EMBL:FP102596
Ensembl:ENSSSCT00000003707 Uniprot:F1RJE9
Length = 302
Score = 107 (42.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 39/142 (27%), Positives = 69/142 (48%)
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDA---ANVHNYKRHVTSFE-ISPCYISFE--GNQL 288
L+++AM+ A + +G HDF F + + V +R S E SP + E G +
Sbjct: 160 LDVAAMQEAAQHLLGTHDFSAFQSTGSPATSPVRTLRRASVSPEPSSPLVLPGESRGLRF 219
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
+++ +FL+ QVR M AVL +G G + ++ +L++ + Q +AP L L
Sbjct: 220 WSLEFESQSFLYRQVRRMTAVLVAVGLGALTPAQVKMILESRDPLGRHQSRVAPAHGLFL 279
Query: 349 QSCDFDGL---KFTCSLDAGHD 367
+S + L ++ + AG D
Sbjct: 280 KSVLYGDLGKRRWPKEVPAGSD 301
Score = 50 (22.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 203 IRVIGWSPAPTDFSARFSCISREYKY 228
IRV+ P+ F AR++ SR Y Y
Sbjct: 107 IRVLQAFRVPSHFHARYAATSRTYLY 132
>UNIPROTKB|F1PXJ5 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 OMA:WALPADC GeneTree:ENSGT00510000048520
EMBL:AAEX03003844 Ensembl:ENSCAFT00000030633 Uniprot:F1PXJ5
Length = 303
Score = 104 (41.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 35/127 (27%), Positives = 62/127 (48%)
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDA---ANVHNYKRHVTSFEI-SPCYISFEGN-QLC 289
L++ AM+ A + +G HDFR F + ++V +R S + SP ++ E
Sbjct: 160 LDVDAMQEAAQHLLGTHDFRAFQSAGSPTTSSVRTLRRASVSPDPGSPFVLAQEKRLHFW 219
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
++ +FL+ QVR M AVL +G G ++ +L++ + Q +AP L L+
Sbjct: 220 NLEFESRSFLYRQVRRMTAVLVAVGLGALRPAQVKVILESRDPLGRHQARVAPAHGLFLK 279
Query: 350 SCDFDGL 356
S ++ L
Sbjct: 280 SVLYENL 286
Score = 53 (23.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 203 IRVIGWSPAPTDFSARFSCISREYKY 228
IRV+ P+DF AR + SR Y Y
Sbjct: 107 IRVLQAFRVPSDFHARHAATSRTYLY 132
>UNIPROTKB|J9P592 [details] [associations]
symbol:PUSL1 "tRNA pseudouridine synthase" species:9615
"Canis lupus familiaris" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0001522
"pseudouridine synthesis" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 GO:GO:0003723 GO:GO:0008033 GO:GO:0009982
GO:GO:0001522 SUPFAM:SSF55120 Gene3D:3.30.70.580 Gene3D:3.30.70.660
PANTHER:PTHR11142 GeneTree:ENSGT00510000048520 EMBL:AAEX03003844
Ensembl:ENSCAFT00000048781 Uniprot:J9P592
Length = 305
Score = 104 (41.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 35/127 (27%), Positives = 62/127 (48%)
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDA---ANVHNYKRHVTSFEI-SPCYISFEGN-QLC 289
L++ AM+ A + +G HDFR F + ++V +R S + SP ++ E
Sbjct: 158 LDVDAMQEAAQHLLGTHDFRAFQSAGSPTTSSVRTLRRASVSPDPGSPFVLAQEKRLHFW 217
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
++ +FL+ QVR M AVL +G G ++ +L++ + Q +AP L L+
Sbjct: 218 NLEFESRSFLYRQVRRMTAVLVAVGLGALRPAQVKVILESRDPLGRHQARVAPAHGLFLK 277
Query: 350 SCDFDGL 356
S ++ L
Sbjct: 278 SVLYENL 284
Score = 53 (23.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 203 IRVIGWSPAPTDFSARFSCISREYKY 228
IRV+ P+DF AR + SR Y Y
Sbjct: 105 IRVLQAFRVPSDFHARHAATSRTYLY 130
>FB|FBgn0083976 [details] [associations]
symbol:CG34140 species:7227 "Drosophila melanogaster"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0009982 "pseudouridine synthase activity"
evidence=IEA] [GO:0001522 "pseudouridine synthesis" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] HAMAP:MF_00171
InterPro:IPR001406 InterPro:IPR020094 InterPro:IPR020095
InterPro:IPR020097 InterPro:IPR020103 Pfam:PF01416
PIRSF:PIRSF001430 EMBL:AE014296 GO:GO:0003723 GO:GO:0008033
GO:GO:0009982 GO:GO:0001522 SUPFAM:SSF55120 eggNOG:COG0101
Gene3D:3.30.70.580 Gene3D:3.30.70.660 PANTHER:PTHR11142
GeneTree:ENSGT00510000048520 EMBL:BT088434 RefSeq:NP_001036574.1
UniGene:Dm.21318 SMR:Q0E8K6 STRING:Q0E8K6
EnsemblMetazoa:FBtr0110975 GeneID:4379908 KEGG:dme:Dmel_CG34140
FlyBase:FBgn0083976 InParanoid:Q0E8K6 OMA:HHDFSSF OrthoDB:EOG4CNP7D
NextBio:855816 Uniprot:Q0E8K6
Length = 306
Score = 93 (37.8 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 29/103 (28%), Positives = 46/103 (44%)
Query: 228 YFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANV---HNY--KRHVTSFEISPCYI- 281
YF + ++ +++A + F+G HDFR F + V H R + I P
Sbjct: 161 YFLQSSSFDIKRVQAAARMFIGVHDFRTFMSVSRQKVCRDHPMFTVRKIDEINIRPGETR 220
Query: 282 SFEGNQLCA--------IKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ N + A I+IR +FL+ QVR +V L +G G
Sbjct: 221 ALSSNAIQAAETYNYWDIEIRAKSFLYKQVRRIVGALIALGNG 263
Score = 65 (27.9 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 37/145 (25%), Positives = 54/145 (37%)
Query: 92 RYVALKVMYFGQRFYGFASDGN-MEPT-VESEIFKA-LEKTRLLVADKKESHYSRCGRTD 148
RY+ L + Y G F G N +E + ++++ + LE + E H RTD
Sbjct: 3 RYL-LNISYIGTTFRGIQKTVNKLEQSRLDTKSIQGCLELALQVFHPTNEIHTVLSSRTD 61
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD---IRV 205
GV ++ + + L N T+ VLNR L K IRV
Sbjct: 62 AGVHALHSTVQVDLE------RPNGQPYDTTI----------LTGVLNRTLNKQRLPIRV 105
Query: 206 IGWSPAPTDFSARFSCISREYKYFF 230
+ F R+ I R Y Y F
Sbjct: 106 LSSKLVANSFHCRYDAIGRTYLYRF 130
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 410 394 0.00095 117 3 11 22 0.37 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 67
No. of states in DFA: 609 (65 KB)
Total size of DFA: 261 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 32.61u 0.09s 32.70t Elapsed: 00:00:02
Total cpu time: 32.62u 0.09s 32.71t Elapsed: 00:00:02
Start: Tue May 21 05:45:45 2013 End: Tue May 21 05:45:47 2013