BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015260
(410 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297739353|emb|CBI29343.3| unnamed protein product [Vitis vinifera]
Length = 466
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 281/421 (66%), Positives = 329/421 (78%), Gaps = 26/421 (6%)
Query: 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKT 66
+LIS+LQSQL +L+NRV+ELEA+NAKL S++S C C KI +K+ D +LV+++ +
Sbjct: 17 DLISTLQSQLLSLRNRVQELEAENAKLSSQISSCHCHKIREKL-----DSISLVQQSDEL 71
Query: 67 ESGGCKTGKKKVKEKMSGT----LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEI 122
+ GG +T KKK+K K+ GT +NH KRYVALKVMYFG RFYGFAS+ +M+PTVESEI
Sbjct: 72 KPGGDETRKKKLKGKIPGTNMRTMNHISKRYVALKVMYFGPRFYGFASEAHMDPTVESEI 131
Query: 123 FKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQE 182
FKALEKT L V DKKE YSRCGRTDKGVSSVGQVIA++LRSN+KE + E V E
Sbjct: 132 FKALEKTWLAVGDKKELQYSRCGRTDKGVSSVGQVIALFLRSNLKEIGAREENSKEVVPE 191
Query: 183 EQIED-----------------EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISRE 225
EQ E+ EIDY+RVLNRVLPKDIRV+GW P P F ARFSC+SRE
Sbjct: 192 EQYEERREVKDEGGGDSLASEGEIDYMRVLNRVLPKDIRVMGWCPVPIGFHARFSCLSRE 251
Query: 226 YKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEG 285
YKYFFWR NLN+ AMESAGKKFVGEHDFRNFCKMDA NVHNY+RH+ SFEI+P ++G
Sbjct: 252 YKYFFWRGNLNILAMESAGKKFVGEHDFRNFCKMDAVNVHNYRRHIISFEIAPTNNRYDG 311
Query: 286 NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIP 345
NQL AIKI+GSAFLWHQVRCMVAVLFMIGQGLES DV+++LLDT RKPQY MAPEIP
Sbjct: 312 NQLWAIKIKGSAFLWHQVRCMVAVLFMIGQGLESPDVVDALLDTERTSRKPQYAMAPEIP 371
Query: 346 LVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSS 405
LVL+SC+F+GLKF CS DAG LR+HL NEC+ YQLQAAIFHEALL+CLP AN E +S
Sbjct: 372 LVLESCEFEGLKFICSSDAGQALRMHLENECRTYQLQAAIFHEALLSCLPSANSAEKQNS 431
Query: 406 L 406
L
Sbjct: 432 L 432
>gi|255572341|ref|XP_002527109.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223533532|gb|EEF35272.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 438
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 273/396 (68%), Positives = 315/396 (79%), Gaps = 17/396 (4%)
Query: 8 LISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTE 67
+I L+SQ+ +L+++VKELEA+NAKL S L+ CRC + E+K+ N T
Sbjct: 27 VIIKLKSQIASLKSKVKELEAENAKLSSTLANCRCNQAEEKL-------------NVSTG 73
Query: 68 SGGCKTGKKKVKEKMSG----TLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIF 123
K KKK EK SG +NHH KRYVALKVMYFGQRFYGF+S+G M+PTVESEIF
Sbjct: 74 EHNIKNIKKKTIEKNSGHATTIMNHHLKRYVALKVMYFGQRFYGFSSEGQMDPTVESEIF 133
Query: 124 KALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE 183
KALE+TRLL+ DKKE YSRCGRTDKGVS+VGQVIA+ LRS +K+ + GET ++
Sbjct: 134 KALERTRLLIGDKKEIQYSRCGRTDKGVSAVGQVIALLLRSKVKDIDEIGKVFGETASQK 193
Query: 184 QIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESA 243
E EIDYVRVLNRVLP DIR+IGW P P DFSARFSC+SREYKYFF +NLNL AMESA
Sbjct: 194 HSEGEIDYVRVLNRVLPNDIRIIGWCPVPNDFSARFSCLSREYKYFFRGDNLNLLAMESA 253
Query: 244 GKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
GKKF+GEHDFRNFCKMDA NVHNY+R++TSFEISPC+ +EGNQL AIKIRGSAFLWHQV
Sbjct: 254 GKKFIGEHDFRNFCKMDAMNVHNYRRNITSFEISPCHERYEGNQLFAIKIRGSAFLWHQV 313
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
RCMVAVLFMIGQGLES DVI+ LLDT PRKPQY MAPEIPLVL SCDF+GL+FTCS D
Sbjct: 314 RCMVAVLFMIGQGLESPDVIDVLLDTVRTPRKPQYPMAPEIPLVLHSCDFEGLQFTCSTD 373
Query: 364 AGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANG 399
AG LR HL NEC++YQLQAAIFHEA+ +CLPL+NG
Sbjct: 374 AGKALRTHLENECRLYQLQAAIFHEAIFSCLPLSNG 409
>gi|356534023|ref|XP_003535557.1| PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max]
Length = 426
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 270/408 (66%), Positives = 316/408 (77%), Gaps = 25/408 (6%)
Query: 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKT 66
ELI+SLQ+ RVKELE +NAKLLS+L+ CR ++E KV+ E G + NRK+
Sbjct: 9 ELITSLQA-------RVKELETENAKLLSQLADCRSHEMEKKVYVPDERGGKSKKGNRKS 61
Query: 67 ESGGCKTGKKKVKEKMSGT----LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEI 122
E +K+ EKM G ++HH +RYVALKVMYFG+RFYGFAS+ MEPTVESE+
Sbjct: 62 E--------EKI-EKMPGYNTRFMSHHSRRYVALKVMYFGKRFYGFASEAQMEPTVESEL 112
Query: 123 FKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQE 182
FKA EKTRLLV +KKES YSRCGRTDKGVSSVGQVIA++LRSN+K TNN + G V +
Sbjct: 113 FKAFEKTRLLVGNKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISETNNGNSG-VVLD 171
Query: 183 EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMES 242
EQ E EIDYVRVLNRVLP DIR++GW PAP DF ARFSC+SREYKYFFW+ENLN+ AMES
Sbjct: 172 EQHEGEIDYVRVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIQAMES 231
Query: 243 AGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQ 302
AG K VGEHDFRNFCKMDAANVHNY+R + FEISP + + NQL IKIRGSAFLWHQ
Sbjct: 232 AGNKLVGEHDFRNFCKMDAANVHNYRRRIKLFEISPTDVRYNDNQLWVIKIRGSAFLWHQ 291
Query: 303 VRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSL 362
VRCMV VLFM+G+GLES +VI+ LLDT I RKPQY MA E+PLVLQSC+FD +KF CS
Sbjct: 292 VRCMVVVLFMVGKGLESPNVIDMLLDTARILRKPQYTMASEVPLVLQSCEFDNIKFMCSS 351
Query: 363 DAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSLIHLH 410
+AG L +HL NECQ+YQLQAAIFHEALLNC+PL+N SL+H
Sbjct: 352 EAGEALHVHLVNECQIYQLQAAIFHEALLNCVPLSN----DQSLLHFQ 395
>gi|356574565|ref|XP_003555416.1| PREDICTED: tRNA pseudouridine synthase 3-like [Glycine max]
Length = 426
Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/396 (67%), Positives = 313/396 (79%), Gaps = 21/396 (5%)
Query: 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKT 66
ELI++LQ+ R KELEA+NAKLLS+L+ CRC ++E K+H E G + NRK+
Sbjct: 9 ELIATLQA-------RAKELEAENAKLLSQLADCRCHEMEKKLHIPDEKGRESKKGNRKS 61
Query: 67 ESGGCKTGKKKVKEKMSGT----LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEI 122
E +K+ EKM G ++HH KRYVALKV YFG+RFYGFAS+ MEPTVESE+
Sbjct: 62 E--------EKI-EKMPGYNTRFMSHHSKRYVALKVTYFGKRFYGFASEAQMEPTVESEL 112
Query: 123 FKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQE 182
FKA EKTRLLV DKKES YSRCGRTDKGVSSVGQVIA++LRSN+K TNN + G V +
Sbjct: 113 FKAFEKTRLLVGDKKESQYSRCGRTDKGVSSVGQVIALFLRSNLKISATNNGNSG-VVLD 171
Query: 183 EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMES 242
EQ E EIDYV VLNRVLP DIR++GW PAP DF ARFSC+SREYKYFFW+ENLN+ A+E
Sbjct: 172 EQHEGEIDYVGVLNRVLPNDIRIMGWCPAPVDFHARFSCLSREYKYFFWKENLNIPAIEV 231
Query: 243 AGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQ 302
AG K VGEHDFRNFCKMDAANVHNY+R +T FEIS + + NQL IKIRGSAFLWHQ
Sbjct: 232 AGNKLVGEHDFRNFCKMDAANVHNYRRCITLFEISSTDVRYNDNQLWVIKIRGSAFLWHQ 291
Query: 303 VRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSL 362
VRCMVAVLFM+G+GLES +VI+ LLDT+ I RKPQY MA E+PLVLQSC+FD +KF CS
Sbjct: 292 VRCMVAVLFMVGKGLESPNVIDMLLDTSRILRKPQYTMASEVPLVLQSCEFDNIKFMCSS 351
Query: 363 DAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLAN 398
DAG LR+HL NECQ+YQLQAAIFHEALLNC+PL+N
Sbjct: 352 DAGEALRVHLVNECQIYQLQAAIFHEALLNCVPLSN 387
>gi|224066589|ref|XP_002302151.1| predicted protein [Populus trichocarpa]
gi|222843877|gb|EEE81424.1| predicted protein [Populus trichocarpa]
Length = 465
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 271/427 (63%), Positives = 324/427 (75%), Gaps = 30/427 (7%)
Query: 1 MSEAKQELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLV 60
MSE +E+I+ L+SQ+ LQNRV+ELE +NAK S+LS CRC+++++K E L
Sbjct: 1 MSEEAEEIIN-LRSQITFLQNRVQELEEENAKFSSRLSSCRCDELQEK--KPKEKCENLG 57
Query: 61 EENRKTESGGCKTGKKKVKEKMSG----TLNHHFKRYVALKVMYFGQRFYGFASDGNMEP 116
EE + SG K+G+KK K G +NHH +RYVALKVMYFGQRFYGF+ + M+P
Sbjct: 58 EERGEMNSGCKKSGRKKATPKTPGYDTRIMNHHPRRYVALKVMYFGQRFYGFSLEAQMDP 117
Query: 117 TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASM 176
TVESEIFKALE TRLL+ D+KE YSRCGRTDKGVS+VGQVIA+YLRS +K+ + +N
Sbjct: 118 TVESEIFKALETTRLLIGDRKEIQYSRCGRTDKGVSAVGQVIALYLRSKLKDIDAHNKHS 177
Query: 177 GETVQEEQ--IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN 234
GETV EEQ EIDYVRVLN VLPKDIR++GW P P+DFSARFSC+SREYKYFFW +N
Sbjct: 178 GETVPEEQDGQPGEIDYVRVLNGVLPKDIRIVGWCPVPSDFSARFSCLSREYKYFFWNDN 237
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYIS------------ 282
LNL ME+AGKK +GEHDFRNFCKMDA VHNY+R+V SFEISPC +S
Sbjct: 238 LNLLVMETAGKKLIGEHDFRNFCKMDAVKVHNYRRNVMSFEISPCDMSHSSGMGSVKWMI 297
Query: 283 --------FEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPR 334
FEG+QL AIKI+GSAFLWHQVRCMVAVLFMIGQGLES +VI++LLDT + R
Sbjct: 298 TKPSIRTRFEGHQLYAIKIKGSAFLWHQVRCMVAVLFMIGQGLESPEVIDALLDTRTL-R 356
Query: 335 KPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCL 394
KPQY MAPEIPLVL SC+F+GLKF+CS DAG L +HL NEC++Y LQAAIF EALL+ L
Sbjct: 357 KPQYLMAPEIPLVLLSCEFEGLKFSCSSDAGQALHVHLENECRLYHLQAAIFQEALLSHL 416
Query: 395 PLANGLE 401
PL+ G E
Sbjct: 417 PLSIGAE 423
>gi|449446486|ref|XP_004141002.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Cucumis
sativus]
Length = 455
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 254/391 (64%), Positives = 297/391 (75%), Gaps = 15/391 (3%)
Query: 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTES 68
I+SLQSQL LQ+RVKELE N+KL S+L+ C C E +++ G D + +E+++ ES
Sbjct: 34 IASLQSQLRLLQDRVKELEEKNSKLSSRLASCCCS--ERRMNFG--DRSRSIEKSK--ES 87
Query: 69 GGCKTGKKKVKEKMSG----TLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFK 124
G T KKK EK +G L+H KRY+ALKVMYFGQRFYGFAS+ MEPTVESEIF+
Sbjct: 88 G---TTKKKSVEKTTGYNTRILDHCSKRYIALKVMYFGQRFYGFASEAQMEPTVESEIFR 144
Query: 125 ALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184
ALEK RLLV +KES YSRCGRTDKGVSSVGQVIA+YLRSN+K+ S EEQ
Sbjct: 145 ALEKARLLVGGRKESCYSRCGRTDKGVSSVGQVIALYLRSNLKDPPNGENSCHNG--EEQ 202
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244
+ EIDYVRV+N+VLP DIRV+GW P FSARFSC+ R+YKYFFW NLN+SAME AG
Sbjct: 203 HDGEIDYVRVINKVLPNDIRVLGWCSVPVGFSARFSCLRRKYKYFFWGANLNISAMERAG 262
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
KKFVGEHDFRNFCKMDAANVHNY+R + SF+ISPC + EGN L A I GSAFLWHQVR
Sbjct: 263 KKFVGEHDFRNFCKMDAANVHNYRRRIMSFDISPCDVRTEGNPLWAFNIEGSAFLWHQVR 322
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
CMVAV+FM+GQ LE DVI+ LLD PRKPQY MA E LVL SC+F+G+KF CS DA
Sbjct: 323 CMVAVVFMVGQDLEDPDVIDILLDPLRTPRKPQYVMASENSLVLHSCEFEGVKFWCSSDA 382
Query: 365 GHDLRLHLRNECQVYQLQAAIFHEALLNCLP 395
G L+LHL NE + Y+LQAAIF EALL+CLP
Sbjct: 383 GEALQLHLSNEIRTYKLQAAIFKEALLSCLP 413
>gi|297846396|ref|XP_002891079.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp.
lyrata]
gi|297336921|gb|EFH67338.1| hypothetical protein ARALYDRAFT_473569 [Arabidopsis lyrata subsp.
lyrata]
Length = 443
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/388 (60%), Positives = 292/388 (75%), Gaps = 17/388 (4%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
+++L L+NRVKELE +NAKLLS++S C+C+++E K V D ++LV R K
Sbjct: 22 ETELVFLRNRVKELEVENAKLLSQVSSCQCQQMEVKHDRSVSDSSSLVRRRRVR-----K 76
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
K + + KRYVALK+MYFG+RFYGF+++ MEP++ESE+FKALE+TRLL
Sbjct: 77 GDKNSIPSHLIS------KRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLL 130
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASM--GETVQEEQIEDEID 190
V DKK+S YSRCGRTDKGVSS GQVIA++LRS +K ++ + G+T + E D
Sbjct: 131 VGDKKDSCYSRCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGKTGERP----EYD 186
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
YVRVLNR LP DIRVIGWSPAP DF ARFSC +REYKYFFWR+NLNLSAM+ AGKKF+GE
Sbjct: 187 YVRVLNRALPDDIRVIGWSPAPVDFHARFSCYAREYKYFFWRQNLNLSAMDIAGKKFIGE 246
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
HDFRNFCKMD ANVH Y R VT FE+SPC S EG+QLC +RGSAFLWHQ+RCMVAVL
Sbjct: 247 HDFRNFCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVL 306
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRL 370
FMIGQG+ES+DVI++LLDT PRKPQY +A EIPLVL++C+F+ + F CS A LR
Sbjct: 307 FMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEFENVDFICSPGAAESLRS 366
Query: 371 HLRNECQVYQLQAAIFHEALLNCLPLAN 398
H +NE YQL++ I+ EAL NCLPL+N
Sbjct: 367 HFKNESLTYQLESVIYQEALRNCLPLSN 394
>gi|18399149|ref|NP_564438.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
gi|13430550|gb|AAK25897.1|AF360187_1 unknown protein [Arabidopsis thaliana]
gi|14532756|gb|AAK64079.1| unknown protein [Arabidopsis thaliana]
gi|332193556|gb|AEE31677.1| pseudouridine synthase-like protein [Arabidopsis thaliana]
Length = 446
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/395 (59%), Positives = 292/395 (73%), Gaps = 17/395 (4%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
+++L L+NRVKELE +NAKLLS++S C+C+++E K HD ++ + R+ G
Sbjct: 22 ETELVFLRNRVKELEVENAKLLSQVSSCQCQQMEVK-HDRSLSDSSSLVRRRRVRKGD-- 78
Query: 73 TGKKKVKEKMSGTLNHHF--KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTR 130
++ H KRYVALK+MYFG+RFYGF+++ MEP++ESE+FKALE+TR
Sbjct: 79 ----------KNSIPSHLISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTR 128
Query: 131 LLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID 190
LLV DKK+S YSRCGRTDKGVSS GQVIA++LRS +K ++ + E+ E D
Sbjct: 129 LLVGDKKDSCYSRCGRTDKGVSSTGQVIALFLRSRLKSPPGDSKAQVNGRTGER--PEYD 186
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
YVRVLNR LP DIRVIGWSPAP DF ARFSC +REYKYFFWR+NLNLSAM+ AGKKF+GE
Sbjct: 187 YVRVLNRALPDDIRVIGWSPAPIDFHARFSCYAREYKYFFWRQNLNLSAMDFAGKKFIGE 246
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
HDFRNFCKMD ANVH Y R VT FE+SPC S EG+QLC +RGSAFLWHQ+RCMVAVL
Sbjct: 247 HDFRNFCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQLCTFTMRGSAFLWHQIRCMVAVL 306
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRL 370
FMIGQG+ES+DVI++LLDT PRKPQY +A EIPLVL++C+F+ + F CS A LR
Sbjct: 307 FMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLVLRTCEFENVDFICSPGAAESLRS 366
Query: 371 HLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSS 405
H +NE YQL++ I+ EAL NCLPL+N + S
Sbjct: 367 HFKNESLTYQLESVIYQEALRNCLPLSNNVSTEES 401
>gi|10086461|gb|AAG12521.1|AC015446_2 Putative pseudouridine synthase [Arabidopsis thaliana]
Length = 442
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/411 (56%), Positives = 291/411 (70%), Gaps = 38/411 (9%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
+++L L+NRVKELE +NAKLLS++S C+C+++E K HD ++ + R+ G
Sbjct: 22 ETELVFLRNRVKELEVENAKLLSQVSSCQCQQMEVK-HDRSLSDSSSLVRRRRVRKG--- 77
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
+K S + KRYVALK+MYFG+RFYGF+++ MEP++ESE+FKALE+TRLL
Sbjct: 78 -------DKNSIPSHLISKRYVALKIMYFGKRFYGFSAEAQMEPSIESEVFKALERTRLL 130
Query: 133 VADKKESHYSRCGRTDKGVSSVGQ-------------------------VIAIYLRSNIK 167
V DKK+S YSRCGRTDKGVSS GQ VIA++LRS +K
Sbjct: 131 VGDKKDSCYSRCGRTDKGVSSTGQFKNQFLIVLMFFQNPVMGAFPNVYKVIALFLRSRLK 190
Query: 168 ECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYK 227
++ + E+ E DYVRVLNR LP DIRVIGWSPAP DF ARFSC +REYK
Sbjct: 191 SPPGDSKAQVNGRTGER--PEYDYVRVLNRALPDDIRVIGWSPAPIDFHARFSCYAREYK 248
Query: 228 YFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQ 287
YFFWR+NLNLSAM+ AGKKF+GEHDFRNFCKMD ANVH Y R VT FE+SPC S EG+Q
Sbjct: 249 YFFWRQNLNLSAMDFAGKKFIGEHDFRNFCKMDVANVHCYTRRVTFFEVSPCQNSHEGDQ 308
Query: 288 LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLV 347
LC +RGSAFLWHQ+RCMVAVLFMIGQG+ES+DVI++LLDT PRKPQY +A EIPLV
Sbjct: 309 LCTFTMRGSAFLWHQIRCMVAVLFMIGQGVESVDVIDTLLDTKKTPRKPQYLLASEIPLV 368
Query: 348 LQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLAN 398
L++C+F+ + F CS A LR H +NE YQL++ I+ EAL NCLPL+N
Sbjct: 369 LRTCEFENVDFICSPGAAESLRSHFKNESLTYQLESVIYQEALRNCLPLSN 419
>gi|194706182|gb|ACF87175.1| unknown [Zea mays]
gi|195612012|gb|ACG27836.1| hypothetical protein [Zea mays]
gi|414867030|tpg|DAA45587.1| TPA: pseudouridylate synthase isoform 1 [Zea mays]
gi|414867031|tpg|DAA45588.1| TPA: pseudouridylate synthase isoform 2 [Zea mays]
gi|414867032|tpg|DAA45589.1| TPA: pseudouridylate synthase isoform 3 [Zea mays]
gi|414867033|tpg|DAA45590.1| TPA: pseudouridylate synthase isoform 4 [Zea mays]
Length = 457
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/413 (53%), Positives = 279/413 (67%), Gaps = 38/413 (9%)
Query: 12 LQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKV-----HDGVE------------ 54
L+ ++ AL+ RV+ELEA+N +L S C C E V H V+
Sbjct: 12 LRGEVAALRMRVQELEAENQRLARIASTCTCGFKEGSVGSITAHHNVKFHQNSTMEKDLS 71
Query: 55 ---DGTTL-----VEENRKTESGGCKTGKKKVKEKMS---GTLNHHFKRYVALKVMYFGQ 103
D T + ++ NR + G K ++ G L+H KR VALKVMYFGQ
Sbjct: 72 SPFDHTVISNANEMQCNRNADDNGLPEDSSKHTKRTGRKVGILSHCPKRLVALKVMYFGQ 131
Query: 104 RFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLR 163
RFYGF+S+GN+EPTVESEIFKALE+ +L+VA++KES YSRCGRTDKGVS+ GQVI++YLR
Sbjct: 132 RFYGFSSEGNIEPTVESEIFKALERAKLMVANRKESCYSRCGRTDKGVSATGQVISLYLR 191
Query: 164 SNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCIS 223
SNIK+ G+ + E EIDYV+VLNR+LP+DIRV+GW P P DF ARF+C+S
Sbjct: 192 SNIKDVG------GDMLDERS---EIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLS 242
Query: 224 REYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISF 283
REYKY FW+ +L++ M+ A KF+GEHDFRNFCKMDAANV NY+RH+T F IS C
Sbjct: 243 REYKYLFWKGDLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRS 302
Query: 284 EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPE 343
++LC++ I+GSAFLWHQVRCMVAVLF+IGQGLES V++SLLD RKPQY MAPE
Sbjct: 303 NNDELCSMTIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPE 362
Query: 344 IPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPL 396
+PL+LQSC FD F CS DA L HL +E + + LQA IFH A +CLP
Sbjct: 363 LPLILQSCLFDKANFMCSADASRSLTEHLNDEYRHHMLQAEIFHIA-SSCLPF 414
>gi|242040775|ref|XP_002467782.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
gi|241921636|gb|EER94780.1| hypothetical protein SORBIDRAFT_01g033960 [Sorghum bicolor]
Length = 459
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 221/420 (52%), Positives = 275/420 (65%), Gaps = 40/420 (9%)
Query: 12 LQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKV------HDG-VEDGTTL----- 59
L++++ L+ RV+ELEA+N +L S C C E V H+ +TL
Sbjct: 14 LRAEVATLRTRVQELEAENQRLARIASSCTCGFKESNVGSITAQHNAKFRQSSTLEKDLS 73
Query: 60 -------------VEENRKTESGGCKTGKKKVKEKMS---GTLNHHFKRYVALKVMYFGQ 103
V+ N E G K ++ G L+H KR VALKVMYFGQ
Sbjct: 74 FQFDHTVVSTANEVQCNVNAEGNGLPDDSSKRTKRTGRHVGNLSHCPKRLVALKVMYFGQ 133
Query: 104 RFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLR 163
RFYGF+S+GN EPTVESEIFKALE+ +L+V +KES YSRCGRTDKGVS+ GQVI++YLR
Sbjct: 134 RFYGFSSEGNTEPTVESEIFKALERAKLMVGSRKESCYSRCGRTDKGVSATGQVISLYLR 193
Query: 164 SNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCIS 223
SNIK+ G+ + E EIDYV+VLNR+LP+DIRV+GW P P DF ARF+C+S
Sbjct: 194 SNIKDVG------GDMLDERS---EIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLS 244
Query: 224 REYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISF 283
REYKY FW+ +L++ M+ A KF+GEHDFRNFCKMDAANV NY+R +T F IS C
Sbjct: 245 REYKYLFWKGDLDILEMQKAASKFIGEHDFRNFCKMDAANVSNYRRRITEFTISACDRRS 304
Query: 284 EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPE 343
++LC++ I+GSAFLWHQVRCMVAVLF+IGQGLES V++SLLD PRKPQY MAPE
Sbjct: 305 NNDELCSMMIKGSAFLWHQVRCMVAVLFLIGQGLESPSVVDSLLDITKTPRKPQYKMAPE 364
Query: 344 IPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPL--ANGLE 401
+PL+L+SC FD F CS DA L H +E + LQA IFH A +CLP N LE
Sbjct: 365 LPLILRSCLFDKANFMCSSDASQSLTEHFNDEYHHHMLQAEIFHIA-SSCLPFPEPNSLE 423
>gi|357119728|ref|XP_003561586.1| PREDICTED: tRNA pseudouridine synthase 3-like [Brachypodium
distachyon]
Length = 450
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/408 (53%), Positives = 276/408 (67%), Gaps = 33/408 (8%)
Query: 11 SLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTL-----VEENRK 65
SL++++ AL+ RV ELE +N +L S C C ++ V D + V+ N K
Sbjct: 10 SLRTEVAALRLRVLELERENQRLAQIASSCSCVSKDNFPSTLVADASLYGCDQEVQNNGK 69
Query: 66 TE-----------SGGCKTGKKKVKEKMS-------GTLNHHFKRYVALKVMYFGQRFYG 107
+ +G G K++ K + G ++H KR VALK+MYFGQRFYG
Sbjct: 70 SHESRTSGHDCNVNGEGLDGLSKIQSKRANRAGHQVGVVSHCQKRLVALKIMYFGQRFYG 129
Query: 108 FASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIK 167
FAS+ + EPTVESEIFK LE+ RLLV +KES YSRCGRTDKGVS+ GQVI++YLRSN+K
Sbjct: 130 FASEAHTEPTVESEIFKVLERARLLVGSRKESCYSRCGRTDKGVSATGQVISLYLRSNLK 189
Query: 168 ECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYK 227
+ G V +E+ EIDYV+VLNR+LP+DIRVIGW P DF ARFSC+ REYK
Sbjct: 190 D-------PGGNVLDER--SEIDYVKVLNRMLPRDIRVIGWCPVAADFLARFSCLGREYK 240
Query: 228 YFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQ 287
Y FW+ L++ M+ A KF+GEHDFRNFCKMDAANV NY+RH+T F+IS ++
Sbjct: 241 YLFWKGGLDVPKMQKAASKFIGEHDFRNFCKMDAANVSNYRRHITDFDISAYDERSNNDE 300
Query: 288 LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLV 347
L A+ I+GSAFLWHQVRCMVAVLF+IGQGLES V++SLLD PRKPQY MAPE+PL+
Sbjct: 301 LWAMNIKGSAFLWHQVRCMVAVLFLIGQGLESPCVVDSLLDITRTPRKPQYTMAPELPLI 360
Query: 348 LQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLP 395
L+SC FD + F S DA L HL++E Y LQAAIFHEA L+CLP
Sbjct: 361 LRSCKFDKVSFMSSSDASQALIEHLKDEHHQYMLQAAIFHEA-LSCLP 407
>gi|226533212|ref|NP_001145731.1| uncharacterized protein LOC100279238 [Zea mays]
gi|219884209|gb|ACL52479.1| unknown [Zea mays]
gi|414867029|tpg|DAA45586.1| TPA: pseudouridylate synthase [Zea mays]
Length = 486
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/325 (61%), Positives = 246/325 (75%), Gaps = 16/325 (4%)
Query: 72 KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL 131
+TG+K G L+H KR VALKVMYFGQRFYGF+S+GN+EPTVESEIFKALE+ +L
Sbjct: 135 RTGRK------VGILSHCPKRLVALKVMYFGQRFYGFSSEGNIEPTVESEIFKALERAKL 188
Query: 132 LVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDY 191
+VA++KES YSRCGRTDKGVS+ GQVI++YLRSNIK+ G+ + E EIDY
Sbjct: 189 MVANRKESCYSRCGRTDKGVSATGQVISLYLRSNIKDVG------GDMLDERS---EIDY 239
Query: 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251
V+VLNR+LP+DIRV+GW P P DF ARF+C+SREYKY FW+ +L++ M+ A KF+GEH
Sbjct: 240 VKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYKYLFWKGDLDILEMQKAASKFIGEH 299
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
DFRNFCKMDAANV NY+RH+T F IS C ++LC++ I+GSAFLWHQVRCMVAVLF
Sbjct: 300 DFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELCSMTIKGSAFLWHQVRCMVAVLF 359
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLH 371
+IGQGLES V++SLLD RKPQY MAPE+PL+LQSC FD F CS DA L H
Sbjct: 360 LIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQSCLFDKANFMCSADASRSLTEH 419
Query: 372 LRNECQVYQLQAAIFHEALLNCLPL 396
L +E + + LQA IFH A +CLP
Sbjct: 420 LNDEYRHHMLQAEIFHIA-SSCLPF 443
>gi|359495192|ref|XP_002264487.2| PREDICTED: uncharacterized protein LOC100244254 [Vitis vinifera]
Length = 1576
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 169/221 (76%), Positives = 189/221 (85%)
Query: 186 EDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGK 245
E EIDY+RVLNRVLPKDIRV+GW P P F ARFSC+SREYKYFFWR NLN+ AMESAGK
Sbjct: 1322 EGEIDYMRVLNRVLPKDIRVMGWCPVPIGFHARFSCLSREYKYFFWRGNLNILAMESAGK 1381
Query: 246 KFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRC 305
KFVGEHDFRNFCKMDA NVHNY+RH+ SFEI+P ++GNQL AIKI+GSAFLWHQVRC
Sbjct: 1382 KFVGEHDFRNFCKMDAVNVHNYRRHIISFEIAPTNNRYDGNQLWAIKIKGSAFLWHQVRC 1441
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
MVAVLFMIGQGLES DV+++LLDT RKPQY MAPEIPLVL+SC+F+GLKF CS DAG
Sbjct: 1442 MVAVLFMIGQGLESPDVVDALLDTERTSRKPQYAMAPEIPLVLESCEFEGLKFICSSDAG 1501
Query: 366 HDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSL 406
LR+HL NEC+ YQLQAAIFHEALL+CLP AN E +SL
Sbjct: 1502 QALRMHLENECRTYQLQAAIFHEALLSCLPSANSAEKQNSL 1542
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/239 (48%), Positives = 149/239 (62%), Gaps = 44/239 (18%)
Query: 7 ELISSLQSQLEALQNRVK----------------------------------ELEADNAK 32
+LIS+LQSQL +L+NRV+ ELEA+NAK
Sbjct: 17 DLISTLQSQLLSLRNRVQIVIKEKVKRTTTVMEAYILLLYEFLFPNLKSITQELEAENAK 76
Query: 33 LLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGT----LNH 88
L S++S C C KI +K+ D +LV+++ + + GG +T KKK+K K+ GT +NH
Sbjct: 77 LSSQISSCHCHKIREKL-----DSISLVQQSDELKPGGDETRKKKLKGKIPGTNMRTMNH 131
Query: 89 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
KRYVALKVMYFG RFYGFAS+ +M+PTVESEIFKALEKT L V DKKE YSRCGRTD
Sbjct: 132 ISKRYVALKVMYFGPRFYGFASEAHMDPTVESEIFKALEKTWLAVGDKKELQYSRCGRTD 191
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
KGVSSVGQVIA++LRSN+KE + E V EEQ +++ R V P+ ++G
Sbjct: 192 KGVSSVGQVIALFLRSNLKEIGAREENSKEVVPEEQYVRDLEAKR-FCLVFPEGTGLVG 249
>gi|125544113|gb|EAY90252.1| hypothetical protein OsI_11824 [Oryza sativa Indica Group]
Length = 403
Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 192/390 (49%), Positives = 246/390 (63%), Gaps = 52/390 (13%)
Query: 12 LQSQLEALQNRVKELEADNAKLLSKLSLCRC-------EKIEDKVHDGVEDGTTLVEENR 64
+++++ AL+ RV+ELE +N +L S C C V + + ++N
Sbjct: 15 MRAEVAALRLRVQELERENQRLGKIASRCTCGSSKDDSAASSPVVSESLSSSKQEPQKNV 74
Query: 65 KTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFK 124
K+ GC+ G ++H KR +ALK+MYFGQRFYGFAS+ + EPTVESEIFK
Sbjct: 75 KSHCRGCQVG----------VVSHCPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFK 124
Query: 125 ALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184
ALE+ +LLV +KES YSRCGRTDKGVS+ GQVI+++LRSNIK+ +
Sbjct: 125 ALERAKLLVGSRKESCYSRCGRTDKGVSATGQVISLFLRSNIKDAKLD------------ 172
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244
VL+ DF ARFSC+ REYKY FW+ +LN+S M+ A
Sbjct: 173 ---------VLDN-------------KSGDFLARFSCLGREYKYLFWKGDLNISEMQKAA 210
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
KF+GEHD+RNFCKMDAANV NY+RH+T F IS ++L AI I+GSAFLWHQVR
Sbjct: 211 LKFIGEHDYRNFCKMDAANVSNYRRHITDFNISAYDQRSNYDELWAITIKGSAFLWHQVR 270
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
CMVAVLF+IGQGLES +++SLLD PRKPQY MA EIPL+L+SC FD + F CS +A
Sbjct: 271 CMVAVLFLIGQGLESPCIVDSLLDITKTPRKPQYKMASEIPLILRSCLFDEVNFMCSSEA 330
Query: 365 GHDLRLHLRNECQVYQLQAAIFHEALLNCL 394
L HL++E Y LQAAIF EA L+CL
Sbjct: 331 SQALIEHLKDEYHQYMLQAAIFCEA-LSCL 359
>gi|222625021|gb|EEE59153.1| hypothetical protein OsJ_11064 [Oryza sativa Japonica Group]
Length = 403
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 191/390 (48%), Positives = 246/390 (63%), Gaps = 52/390 (13%)
Query: 12 LQSQLEALQNRVKELEADNAKLLSKLSLCRC-------EKIEDKVHDGVEDGTTLVEENR 64
+++++ AL+ RV+ELE +N +L S C C V + + ++N
Sbjct: 15 MRAEVAALRLRVQELERENQRLGKIASRCTCGSSKDDSAASSPVVSESLSSSKQEPQKNV 74
Query: 65 KTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFK 124
K+ GC+ G ++H KR +ALK+MYFGQRFYGFAS+ + EPTVESEIFK
Sbjct: 75 KSHCRGCQVG----------VVSHCPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFK 124
Query: 125 ALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184
ALE+ +LLV +KES YSRCGRTDKGVS+ GQVI+++LRSNIK+ +
Sbjct: 125 ALERAKLLVGSRKESCYSRCGRTDKGVSATGQVISLFLRSNIKDAKLD------------ 172
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244
VL+ DF ARFSC+ REYKY FW+ +LN+S M+ A
Sbjct: 173 ---------VLDN-------------KSGDFLARFSCLGREYKYLFWKGDLNISEMQKAA 210
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
KF+GEHD+RNFCKMDAANV NY+RH+T F IS ++L AI I+GSAFLWHQVR
Sbjct: 211 LKFIGEHDYRNFCKMDAANVSNYRRHITDFNISAYDQRSNYDELWAITIKGSAFLWHQVR 270
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
CMVAVLF+IGQGLE+ +++SLLD PRKPQY MA EIPL+L+SC FD + F CS +A
Sbjct: 271 CMVAVLFLIGQGLETPCIVDSLLDITKTPRKPQYKMASEIPLILRSCLFDEVNFMCSSEA 330
Query: 365 GHDLRLHLRNECQVYQLQAAIFHEALLNCL 394
L HL++E Y LQAAIF EA L+CL
Sbjct: 331 SQALIEHLKDEYHQYMLQAAIFCEA-LSCL 359
>gi|40882706|gb|AAR96247.1| putative pseudouridine synthase [Oryza sativa Japonica Group]
gi|108708473|gb|ABF96268.1| tRNA pseudouridine synthase A family protein [Oryza sativa Japonica
Group]
Length = 411
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 191/390 (48%), Positives = 246/390 (63%), Gaps = 52/390 (13%)
Query: 12 LQSQLEALQNRVKELEADNAKLLSKLSLCRC-------EKIEDKVHDGVEDGTTLVEENR 64
+++++ AL+ RV+ELE +N +L S C C V + + ++N
Sbjct: 15 MRAEVAALRLRVQELERENQRLGKIASRCTCGSSKDDSAASSPVVSESLSSSKQEPQKNV 74
Query: 65 KTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFK 124
K+ GC+ G ++H KR +ALK+MYFGQRFYGFAS+ + EPTVESEIFK
Sbjct: 75 KSHCRGCQVG----------VVSHCPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFK 124
Query: 125 ALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184
ALE+ +LLV +KES YSRCGRTDKGVS+ GQVI+++LRSNIK+ +
Sbjct: 125 ALERAKLLVGSRKESCYSRCGRTDKGVSATGQVISLFLRSNIKDAKLD------------ 172
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244
VL+ DF ARFSC+ REYKY FW+ +LN+S M+ A
Sbjct: 173 ---------VLDN-------------KSGDFLARFSCLGREYKYLFWKGDLNISEMQKAA 210
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
KF+GEHD+RNFCKMDAANV NY+RH+T F IS ++L AI I+GSAFLWHQVR
Sbjct: 211 LKFIGEHDYRNFCKMDAANVSNYRRHITDFNISAYDQRSNYDELWAITIKGSAFLWHQVR 270
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
CMVAVLF+IGQGLE+ +++SLLD PRKPQY MA EIPL+L+SC FD + F CS +A
Sbjct: 271 CMVAVLFLIGQGLETPCIVDSLLDITKTPRKPQYKMASEIPLILRSCLFDEVNFMCSSEA 330
Query: 365 GHDLRLHLRNECQVYQLQAAIFHEALLNCL 394
L HL++E Y LQAAIF EA L+CL
Sbjct: 331 SQALIEHLKDEYHQYMLQAAIFCEA-LSCL 359
>gi|302808177|ref|XP_002985783.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii]
gi|300146290|gb|EFJ12960.1| hypothetical protein SELMODRAFT_181988 [Selaginella moellendorffii]
Length = 372
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 174/368 (47%), Positives = 226/368 (61%), Gaps = 43/368 (11%)
Query: 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTES 68
I L++ + AL R+K LE +NA L ++LS + H EN+ +S
Sbjct: 6 IRELENDVAALSARIKALEVENANLTARLS---------QQHG----------ENQSLKS 46
Query: 69 GGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEK 128
K K++ G +R+VALK+MY G ++GFAS G TVESEIF AL++
Sbjct: 47 KRTHKNHKNHKKENQGNFK---RRFVALKIMYIGSCYHGFASQGCAFNTVESEIFAALQR 103
Query: 129 TRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECN-TNNASMG---------- 177
T L+V +++YSRCGRTD+GVS+ QVIA+YLRS K + T + G
Sbjct: 104 TNLVVGSIADANYSRCGRTDRGVSATAQVIALYLRSKKKALDDTEESGYGSKDRVIVARS 163
Query: 178 -----ETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR 232
E E +DEIDYV LNR LP DIRV+GW P P F ARFSC+ REYKYFF
Sbjct: 164 SREEEEMFAAETDDDEIDYVSSLNRALPADIRVLGWCPVPPGFHARFSCLYREYKYFFID 223
Query: 233 ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIK 292
+ LN+ AM+ A ++ +GEHDFRNFCKMDA N+HNY R + +F+I P L +
Sbjct: 224 DGLNIDAMKQASQRLLGEHDFRNFCKMDADNIHNYTRQILAFDILPI-----EECLWVMH 278
Query: 293 IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCD 352
+RG+AFLWHQVRCM AVLFMIG+G E++ +I+ LLD + RKPQY MAPE+PLVLQSC
Sbjct: 279 VRGNAFLWHQVRCMAAVLFMIGRGHETLTIIDDLLDVDKTMRKPQYVMAPELPLVLQSCA 338
Query: 353 FDGLKFTC 360
F GL+F C
Sbjct: 339 FQGLRFYC 346
>gi|168049023|ref|XP_001776964.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671665|gb|EDQ58213.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 680
Score = 300 bits (769), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 164/385 (42%), Positives = 212/385 (55%), Gaps = 78/385 (20%)
Query: 72 KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVE---------SEI 122
K + K + M +++H+ R+VALKVMY G + GFAS TVE +E+
Sbjct: 195 KGKRNKKRNAMEKSMSHYCSRHVALKVMYLGTGYQGFASQAGSPNTVEVQNSLIGGQTEL 254
Query: 123 FKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIK--------------- 167
F AL +TR++ E+ Y+RCGRTDKGVS+VGQV+A+YLRS I+
Sbjct: 255 FAALHRTRMITGTAAEAKYTRCGRTDKGVSAVGQVVALYLRSKIQPRRQENIVSTGDAEE 314
Query: 168 ECNTNNASMGETV------------------------------------QEEQI-----E 186
E N+ ++ + V +EEQ E
Sbjct: 315 ELNSKSSISAQGVPEGEDGSFTKNSGFVMDLSCIDHSGDRVAMARASRKEEEQFARTAYE 374
Query: 187 DEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNL--------- 237
DE DYV +LNR LP+DIRV+GW P P F+ARFSC+ REYKYFF + LN+
Sbjct: 375 DEYDYVGILNRALPEDIRVLGWCPVPPGFNARFSCMYREYKYFFIDDGLNIDVWTLIYAF 434
Query: 238 ----SAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKI 293
+ M+ A K+F GEHDF NFCKMDAANVHNY R +T F+I P + G + + +
Sbjct: 435 NRQYNVMKFACKQFEGEHDFTNFCKMDAANVHNYMRTITHFDIIPSNEKWGGKSVWIMNV 494
Query: 294 RGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G+AFLWHQVRCM AVLFM+G G E ++E LLD I RKPQY MA E PL+L C +
Sbjct: 495 KGTAFLWHQVRCMAAVLFMVGAGHEKPTIVEELLDVKKIVRKPQYIMASETPLLLFHCGY 554
Query: 354 DGLKFTCSLDAGHDLRLHLRNECQV 378
GL F C DA LRLHL + Q
Sbjct: 555 QGLSFRCHPDAVKRLRLHLESLLQT 579
>gi|224083654|ref|XP_002193509.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Taeniopygia guttata]
Length = 462
Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 166/400 (41%), Positives = 234/400 (58%), Gaps = 35/400 (8%)
Query: 17 EALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKK 76
E L RV+ELE + +L KL EDK G + GK
Sbjct: 11 EQLLRRVQELEVEVKRLQEKLQ-------EDKEGAGKREAPP-------------APGKG 50
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK 136
+ +++ H +R+VAL++ Y G + GFAS N T+E ++F+AL+KTRL V D+
Sbjct: 51 RKRQQRPFDFAAHSRRHVALRIAYLGWGYQGFASQENTPNTIEEKLFEALKKTRL-VDDR 109
Query: 137 KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLN 196
+ S+Y RCGRTDKGVS+ GQVI++ LRS++ E N GE QEE + Y +LN
Sbjct: 110 QTSNYHRCGRTDKGVSAFGQVISLDLRSSLPEGQQLNGHGGEGQQEE-----LRYTHILN 164
Query: 197 RVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNF 256
RVLP DIRV+ W+P +FSARFSC+SR Y+YFF L+++ M++A +++VG HDFRN
Sbjct: 165 RVLPPDIRVLAWAPVGPEFSARFSCLSRTYRYFFPCAQLDVALMDTAAQRYVGTHDFRNL 224
Query: 257 CKMDAAN-VHNYKRHVTSFEISPCYISFEGN-----QLCAIKIRGSAFLWHQVRCMVAVL 310
CKMD AN V N++R + ++ E QLC ++ G AFL+HQVRCM+AVL
Sbjct: 225 CKMDVANGVLNFQRTILRARVTRVSGGGEARPRDPFQLCQFEVTGQAFLYHQVRCMMAVL 284
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRL 370
F+IGQG+ES DVI+ LL+ PRKPQY+MA E PLVL C+F L++ +
Sbjct: 285 FLIGQGMESPDVIDELLNVEKNPRKPQYSMAVEFPLVLYDCEFPDLQWLYDPEVQGFNVT 344
Query: 371 HLRNECQVYQLQAAIFHEAL--LNCLPLANGLEIG-SSLI 407
HL+ + ++ + + L L+ P+A G G SSL+
Sbjct: 345 HLQQLWASHAVKTHVLRDMLAGLDAAPMATGKGRGRSSLV 384
>gi|363742565|ref|XP_417852.3| PREDICTED: tRNA pseudouridine synthase 3 [Gallus gallus]
Length = 459
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 160/404 (39%), Positives = 241/404 (59%), Gaps = 30/404 (7%)
Query: 11 SLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGG 70
S + E L RV++LE + +L KLS E K V+D +
Sbjct: 5 SWATDREQLLRRVRDLEEEVKQLQEKLS-------EGKEGTAVKDTPS------------ 45
Query: 71 CKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTR 130
+ K K +++ + H +R+VAL++ Y G + GFAS N T+E ++F+AL+KTR
Sbjct: 46 -TSRKSKKQQQRPFDFSAHGRRHVALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTR 104
Query: 131 LLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETV-QEEQIEDEI 189
L V D++ S+Y RCGRTDKGVS+ GQVI++ LRSN+ E N G++ + + E+E+
Sbjct: 105 L-VDDRQTSNYHRCGRTDKGVSAFGQVISLDLRSNLSEEKKLNGCTGDSEGKSSKSEEEL 163
Query: 190 DYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVG 249
Y +LNRVLP DIRV+ W+P DFSARFSC+ R Y+YFF +L+++ M +A +++VG
Sbjct: 164 RYTHILNRVLPPDIRVLAWAPVEPDFSARFSCLKRTYRYFFPCADLDVALMHTAAQRYVG 223
Query: 250 EHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGN-----QLCAIKIRGSAFLWHQV 303
HDFRN CKMD AN V N++R + S +++ E +LC ++ G AFL+HQV
Sbjct: 224 THDFRNLCKMDVANGVINFQRTILSAQVTWADGGAESGLRDPFRLCQFEVTGQAFLYHQV 283
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
RCM+A+LF+IGQ +E ++I+ LLD PRKPQY+MA E PLVL C+F+ +++ +
Sbjct: 284 RCMMAILFLIGQRMEGPEIIDELLDVEKNPRKPQYSMAVEFPLVLYDCEFENIQWHYDRE 343
Query: 364 AGHDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGLEIGSS 405
HL+ Y ++ + H L L+ P+A G + G++
Sbjct: 344 VQEFNVTHLQQLWASYAVKTQVLHSMLRGLDTAPMAAGKDPGNA 387
>gi|194696534|gb|ACF82351.1| unknown [Zea mays]
Length = 257
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 131/210 (62%), Positives = 159/210 (75%), Gaps = 1/210 (0%)
Query: 188 EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKF 247
EIDYV+VLNR+LP+DIRV+GW P P DF ARF+C+SREYKY FW+ +L++ M+ A KF
Sbjct: 7 EIDYVKVLNRILPRDIRVLGWCPVPADFHARFTCLSREYKYLFWKGDLDILEMQKAASKF 66
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
+GEHDFRNFCKMDAANV NY+RH+T F IS C ++LC++ I+GSAFLWHQVRCMV
Sbjct: 67 IGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELCSMTIKGSAFLWHQVRCMV 126
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
AVLF+IGQGLES V++SLLD RKPQY MAPE+PL+LQSC FD F CS DA
Sbjct: 127 AVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQSCLFDKANFMCSADASRS 186
Query: 368 LRLHLRNECQVYQLQAAIFHEALLNCLPLA 397
L HL +E + + LQA IFH A +CLP
Sbjct: 187 LTEHLNDEYRHHMLQAEIFHIA-SSCLPFP 215
>gi|326933214|ref|XP_003212702.1| PREDICTED: tRNA pseudouridine synthase 3-like [Meleagris gallopavo]
Length = 710
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 159/398 (39%), Positives = 237/398 (59%), Gaps = 32/398 (8%)
Query: 11 SLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGG 70
S + E L RV++LE + +L KLS E K V+D
Sbjct: 5 SWATDREQLLRRVQDLEEEVKQLQEKLS-------EGKEGTAVKD--------------- 42
Query: 71 CKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTR 130
+ +K K++ + H +R+VAL++ Y G + GFAS N T+E ++F+AL+KTR
Sbjct: 43 TPSTSRKSKQQRPFDFSAHGRRHVALRIAYLGWGYQGFASQENTSNTIEEKLFEALKKTR 102
Query: 131 LLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEI 189
L V ++ S+Y RCGRTDKGVS+ GQVI++ LRSN+ KE N + + + E+E+
Sbjct: 103 L-VDSRQTSNYHRCGRTDKGVSAFGQVISLDLRSNLSKEKKLNGCTGDSEGKSSKSEEEL 161
Query: 190 DYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVG 249
Y +LNRVLP DIRV+ W+P DFSARFSC+ R Y+YFF +L+++ M++A +++VG
Sbjct: 162 RYTHILNRVLPPDIRVLAWAPVEPDFSARFSCLKRTYRYFFPCADLDVALMQAAAQRYVG 221
Query: 250 EHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGN-----QLCAIKIRGSAFLWHQV 303
HDFRN CKMD AN V N++R + S +++ EG +LC ++ G AFL+HQV
Sbjct: 222 THDFRNLCKMDVANGVINFQRTILSAQVTWVDGGAEGGLRDPFRLCQFEVTGQAFLYHQV 281
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
RCM+A+LF+IGQ +E ++I+ LLD PRKPQY+MA E PLVL C+F+ +++ +
Sbjct: 282 RCMMAILFLIGQRMEGPEIIDELLDVEKNPRKPQYSMAVEFPLVLYDCEFENIQWHYDQE 341
Query: 364 AGHDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANG 399
HL+ Y ++ + H+ L L+ P+A G
Sbjct: 342 VQEFNITHLQQLWASYAVKTQVLHDMLRGLDAAPVAAG 379
>gi|444731902|gb|ELW72237.1| tRNA pseudouridine synthase 3 [Tupaia chinensis]
Length = 479
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 163/391 (41%), Positives = 226/391 (57%), Gaps = 35/391 (8%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
+SQ E L RV+ELE + +L R E+ ++ V G
Sbjct: 8 RSQTEKLLERVRELEREVCRL-------RKERASNQKDPAV---------------GRSA 45
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
+G K K + H +R+VAL++ Y G + GFAS N TVE ++F+AL KTRL
Sbjct: 46 SGAGKAKRAFD--FSAHGRRHVALRIAYLGWGYQGFASQENTSNTVEEQLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTD+GVS+ GQVI++ LRS + S V+ EI Y
Sbjct: 103 VESRQTSNYHRCGRTDRGVSAFGQVISLDLRSQLPR---GRGSEDVHVEGTDTAQEIRYT 159
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIRV+ W+P FSARFSC+ R Y+YFF R +L++ +M SA +K+VG HD
Sbjct: 160 HILNRVLPPDIRVLAWAPVEPGFSARFSCLERTYRYFFPRADLDVESMNSAAQKYVGTHD 219
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISFEGN-QLCAIKIRGSAFLWHQVRC 305
FRNFCKMD AN V N++R V S ++ SP + + QLC ++ G AFL+HQVRC
Sbjct: 220 FRNFCKMDVANGVVNFQRTVLSAQVQRVGQSPGEHTQQAPFQLCQFQVTGQAFLYHQVRC 279
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
M+AVLF+IGQGLE +VI+ LLD P+KPQY+MA E PLVL C F+ +++ +A
Sbjct: 280 MMAVLFLIGQGLERPEVIDELLDIESNPQKPQYSMAVEFPLVLYDCTFENIRWVYDREAQ 339
Query: 366 HDLRLHLRNECQVYQLQAAIFHEALLNCLPL 396
HL+ + +QA + + L P+
Sbjct: 340 ELNITHLQQLWAKHAVQAHMLYSLLQGLDPV 370
>gi|109109191|ref|XP_001111887.1| PREDICTED: tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/361 (43%), Positives = 220/361 (60%), Gaps = 37/361 (10%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L R E+ ++K ED RK SG K
Sbjct: 7 RNQTEKLLKRVQELEQEVQRL-------RTEQAKNK-----EDSNI-----RKNSSGAGK 49
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 50 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALSKTRL- 101
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ--IEDEID 190
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS S V+EE +EI
Sbjct: 102 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR---GRDSEDFNVKEEANATAEEIR 158
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
Y +LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ AM+ A +K+VG
Sbjct: 159 YTHILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGT 218
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQV 303
HDFRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQV
Sbjct: 219 HDFRNLCKMDVANGVINFQRTILSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQV 278
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
RCM+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +
Sbjct: 279 RCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQE 338
Query: 364 A 364
A
Sbjct: 339 A 339
>gi|355567201|gb|EHH23580.1| hypothetical protein EGK_07068 [Macaca mulatta]
gi|355752776|gb|EHH56896.1| hypothetical protein EGM_06391 [Macaca fascicularis]
gi|380816966|gb|AFE80357.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|383422019|gb|AFH34223.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
gi|384949702|gb|AFI38456.1| tRNA pseudouridine synthase 3 [Macaca mulatta]
Length = 480
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/361 (43%), Positives = 220/361 (60%), Gaps = 37/361 (10%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L R E+ ++K ED RK SG K
Sbjct: 7 RNQTEKLLKRVQELEQEVQRL-------RTEQAKNK-----EDSNI-----RKNSSGAGK 49
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 50 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALSKTRL- 101
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ--IEDEID 190
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS S V+EE +EI
Sbjct: 102 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR---GRDSEDFNVKEEANATAEEIR 158
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
Y +LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ AM+ A +K+VG
Sbjct: 159 YTHILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGT 218
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQV 303
HDFRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQV
Sbjct: 219 HDFRNLCKMDVANGVINFQRTILSAQVRLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQV 278
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
RCM+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +
Sbjct: 279 RCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQE 338
Query: 364 A 364
A
Sbjct: 339 A 339
>gi|157822367|ref|NP_001101604.1| tRNA pseudouridine synthase 3 [Rattus norvegicus]
gi|149027806|gb|EDL83266.1| pseudouridylate synthase 3 (predicted) [Rattus norvegicus]
gi|165971639|gb|AAI58694.1| Pseudouridylate synthase 3 [Rattus norvegicus]
Length = 479
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/379 (41%), Positives = 231/379 (60%), Gaps = 41/379 (10%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q+E L +RVKELE + E+++ + + ++D T V EN S GC
Sbjct: 7 RNQIEKLLSRVKELEQE------------VERLKKEQANNIKD--TSVREN----SLGCG 48
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
K+ + H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 49 KAKRAFD------FSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALIKTRL- 101
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDY 191
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS + ++ ++++ + + I EI Y
Sbjct: 102 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPRSRDSEDSNLKDGADD--IAKEIRY 159
Query: 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251
+LNRVLP DIRV+ W+PA FSARFSC+ R Y+YFF +L+++ M A +K+VG H
Sbjct: 160 AHILNRVLPADIRVLAWAPAEPSFSARFSCLERTYRYFFPCADLDIATMNYAAQKYVGTH 219
Query: 252 DFRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISFEGN-QLCAIKIRGSAFLWHQVR 304
DFRN CKMD AN V N++R + S ++ SP +G QLC ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVTNFQRTILSAQVQTVAQSPGEEGRQGPFQLCQFEVIGQAFLYHQVR 279
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
CM+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ K+
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENTKWI----- 334
Query: 365 GHDLRLHLRNECQVYQLQA 383
+D +H N + QL A
Sbjct: 335 -YDHEVHEFNVTHLQQLWA 352
>gi|296471772|tpg|DAA13887.1| TPA: tRNA pseudouridine synthase 3 [Bos taurus]
Length = 481
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 215/340 (63%), Gaps = 16/340 (4%)
Query: 27 EADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTL 86
E D ++ ++ L R +++E +V ++ + N + S G K K +
Sbjct: 3 ENDVDRIQTEKLLKRVQELEQEVKRLKKEQANNKDSNIRENSSGAGG-----KPKRAFDF 57
Query: 87 NHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
+ H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V +++ S+Y RCGR
Sbjct: 58 SAHGQRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-VENRQTSNYHRCGR 116
Query: 147 TDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
TDKGVS+ GQVI++ LRS+I K ++ + ++ V + + EI Y +LNRVLP DIRV
Sbjct: 117 TDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVND--VATEIRYTHILNRVLPPDIRV 174
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-V 264
+ W+P T FSARFSC+ R Y+YFF R NL++ M A +K+VG HDFRN CKMD AN V
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGV 234
Query: 265 HNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
N++R + S ++ + E QLC ++ G AFL+HQVRCM+AVLF+IGQG+E
Sbjct: 235 INFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGME 294
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+VI+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 295 KPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKW 334
>gi|77735971|ref|NP_001029684.1| tRNA pseudouridine(38/39) synthase [Bos taurus]
gi|119391067|sp|Q3SX07.1|PUS3_BOVIN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|74356305|gb|AAI04570.1| Pseudouridylate synthase 3 [Bos taurus]
Length = 481
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 215/340 (63%), Gaps = 16/340 (4%)
Query: 27 EADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTL 86
E D ++ ++ L R +++E +V ++ + N + S G K K +
Sbjct: 3 ENDVDRIQTEKLLKRVQELEQEVKRLKKEQANNKDSNIRENSSGAGG-----KPKRAFDF 57
Query: 87 NHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
+ H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V +++ S+Y RCGR
Sbjct: 58 SAHGQRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-VENRQTSNYHRCGR 116
Query: 147 TDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
TDKGVS+ GQVI++ LRS+I K ++ + ++ V + + EI Y +LNRVLP DIRV
Sbjct: 117 TDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVND--VATEIRYTHILNRVLPPDIRV 174
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-V 264
+ W+P T FSARFSC+ R Y+YFF R NL++ M A +K+VG HDFRN CKMD AN V
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGV 234
Query: 265 HNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
N++R + S ++ + E QLC ++ G AFL+HQVRCM+AVLF+IGQG+E
Sbjct: 235 INFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGME 294
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+VI+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 295 KPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKW 334
>gi|440894412|gb|ELR46876.1| tRNA pseudouridine synthase 3 [Bos grunniens mutus]
Length = 481
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 214/340 (62%), Gaps = 16/340 (4%)
Query: 27 EADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTL 86
E D ++ ++ L R +++E +V ++ N + S G K K +
Sbjct: 3 ENDVDRIQTEKLLKRVQELEQEVKRLKKEQANNKNSNIRENSSGAGG-----KPKRAFDF 57
Query: 87 NHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
+ H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V +++ S+Y RCGR
Sbjct: 58 SAHGQRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-VENRQTSNYHRCGR 116
Query: 147 TDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
TDKGVS+ GQVI++ LRS+I K ++ + ++ V + + EI Y +LNRVLP DIRV
Sbjct: 117 TDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVND--VATEIRYTHILNRVLPPDIRV 174
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-V 264
+ W+P T FSARFSC+ R Y+YFF R NL++ M A +K+VG HDFRN CKMD AN V
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPRANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGV 234
Query: 265 HNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
N++R + S ++ + E QLC ++ G AFL+HQVRCM+AVLF+IGQG+E
Sbjct: 235 INFQRTILSAQVQRVGQNLGEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGME 294
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+VI+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 295 KPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKW 334
>gi|402895728|ref|XP_003910970.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Papio anubis]
Length = 481
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 157/361 (43%), Positives = 220/361 (60%), Gaps = 37/361 (10%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L R E+ ++K ED R+ SG K
Sbjct: 8 RNQTEKLLKRVQELEQEVQRL-------RKEQTKNK-----EDSNI-----RENSSGAGK 50
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 51 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ--IEDEID 190
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS S V+EE +EI
Sbjct: 103 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR---GRDSEDFNVKEEANATAEEIR 159
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
Y +LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ AM+ A +K+VG
Sbjct: 160 YTHILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVAMDYAAQKYVGT 219
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQV 303
HDFRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQV
Sbjct: 220 HDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQV 279
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
RCM+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +
Sbjct: 280 RCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQE 339
Query: 364 A 364
A
Sbjct: 340 A 340
>gi|350588615|ref|XP_003482688.1| PREDICTED: tRNA pseudouridine synthase 3-like [Sus scrofa]
Length = 479
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 150/352 (42%), Positives = 216/352 (61%), Gaps = 36/352 (10%)
Query: 15 QLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTG 74
Q E L RV+ELE + +L + + + K+ R++ SGG +
Sbjct: 10 QTEKLLKRVQELEQEVQRLKQEQANNKDSKV------------------RESSSGGRRA- 50
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA 134
K + + H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V
Sbjct: 51 ------KRAFDFSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-VE 103
Query: 135 DKKESHYSRCGRTDKGVSSVGQVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVR 193
+++ S+Y RCGRTDKGVS+ GQVI++ LRS+ +K+ ++ + ++ + V + EI Y
Sbjct: 104 NRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFLKDKDSEDINLKDEVND--ATKEIRYTH 161
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
+LNRVLP DIRV+ W+P FSARFSC+ R Y+YFF +L++ M A +K+VG HDF
Sbjct: 162 ILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPHADLDIVTMNYAAQKYVGTHDF 221
Query: 254 RNFCKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCM 306
RN CKMD AN V N++R + S ++ S E QLC ++ G AFL+HQVRCM
Sbjct: 222 RNLCKMDVANGVTNFQRTILSAQVQLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCM 281
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+AVLF+IGQG+E +VI+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 282 MAVLFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKW 333
>gi|57085889|ref|XP_536533.1| PREDICTED: tRNA pseudouridine synthase 3 [Canis lupus familiaris]
Length = 480
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/340 (42%), Positives = 213/340 (62%), Gaps = 17/340 (5%)
Query: 27 EADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTL 86
E D +L + L R +++E++V ++ + N + S G + K+ +
Sbjct: 3 ENDTDRLQIEKLLKRVQELEEEVQRLKKEQANNKDSNARENSLGARKAKR------AFDF 56
Query: 87 NHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
+ H +R+VALK+ Y G + GFAS N T+E ++F AL KTRL V ++ S+Y RCGR
Sbjct: 57 SAHGRRHVALKIAYLGWGYQGFASQENTNNTIEEKLFDALTKTRL-VESRQTSNYHRCGR 115
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTN-NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
TDKGVS+ GQVI++ LRS+ E +T+ ++++ V + + EI Y +LNRVLP DIRV
Sbjct: 116 TDKGVSAFGQVISLDLRSHFPEGSTSEDSNLKNEVND--VAKEIRYTHILNRVLPPDIRV 173
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-V 264
+ W+P FSARFSC+ R Y+YFF R +L++ M A +K+VG HDFRN CKMD AN V
Sbjct: 174 LAWAPVEPSFSARFSCLERTYRYFFPRADLDIITMNYAAQKYVGTHDFRNLCKMDVANGV 233
Query: 265 HNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
N++R V ++ S E QLC ++ G AFL+HQVRCM+A+LF+IGQG+E
Sbjct: 234 INFQRTVLFAQVELVGQSLDKEQWQEPFQLCQFEVVGQAFLYHQVRCMMAILFLIGQGME 293
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
++I+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 294 KPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKW 333
>gi|296216591|ref|XP_002754614.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Callithrix jacchus]
Length = 477
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/359 (43%), Positives = 218/359 (60%), Gaps = 37/359 (10%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED N + SG K
Sbjct: 8 RNQTEKLLRRVQELEHEVQRL-------KKEQAKNK-----EDS------NIRENSGAGK 49
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 50 T-------KRAFDFSTHGRRHVALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 101
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS S V+EE E EI Y
Sbjct: 102 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR---RRDSEDFNVKEEAAE-EIRYT 157
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG HD
Sbjct: 158 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHD 217
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGN------QLCAIKIRGSAFLWHQVRC 305
FRN CKMD AN V N++R + S ++ P S + QLC ++ G AFL+HQVRC
Sbjct: 218 FRNLCKMDVANGVINFQRTILSAQVQPVGQSPDEERWQVPFQLCQFEVTGQAFLYHQVRC 277
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +++ +A
Sbjct: 278 MMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVEWIYDQEA 336
>gi|426370989|ref|XP_004052438.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Gorilla gorilla
gorilla]
Length = 481
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 161/399 (40%), Positives = 235/399 (58%), Gaps = 39/399 (9%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED R+ SG K
Sbjct: 8 RNQTEKLLKRVQELEQEVQRL-------KKEQAKNK-----EDSNI-----RENSSGAGK 50
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 51 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ--IEDEID 190
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS S V+EE +EI
Sbjct: 103 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR---GRDSEDFNVKEEANVAAEEIR 159
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
Y +LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG
Sbjct: 160 YTHILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGT 219
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQV 303
HDFRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQV
Sbjct: 220 HDFRNLCKMDVANGVINFQRTILSAQVQLVRQSPGEGRWQEPFQLCQFEVTGQAFLYHQV 279
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
RCM+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +
Sbjct: 280 RCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQE 339
Query: 364 AGHDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGL 400
A HL+ + ++ + + L L+ +P+ G+
Sbjct: 340 AQKFNITHLQQLWANHAVKTHMLYSMLQGLDSVPVPCGI 378
>gi|354481125|ref|XP_003502753.1| PREDICTED: tRNA pseudouridine synthase 3 [Cricetulus griseus]
gi|344255032|gb|EGW11136.1| tRNA pseudouridine synthase 3 [Cricetulus griseus]
Length = 480
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 152/386 (39%), Positives = 228/386 (59%), Gaps = 35/386 (9%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q+E L NRVKELE + ++++ + + +D + + EN
Sbjct: 7 RNQIEKLLNRVKELEQE------------VKRLKKEQANSTKDSS--IREN------SLG 46
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
+GK K S H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 47 SGKAKRAFDFSA----HGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL- 101
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC-NTNNASMGETVQEEQIEDEIDY 191
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS +++++ + + + + + EI Y
Sbjct: 102 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPRGRDSDDSDLKD--EADDVAKEIRY 159
Query: 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251
+LNRVLP DIRV+ W+P FSARF+C+ R Y+YFF R +L++ M A +K+VG H
Sbjct: 160 THILNRVLPADIRVLAWAPVEPGFSARFNCLERTYRYFFPRADLDIVTMNYAAQKYVGTH 219
Query: 252 DFRNFCKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVR 304
DFRN CKMD AN V N++R + S ++ S E QLC ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVINFQRTILSAQVQLVTWSLGEERRQEPFQLCQFEVIGQAFLYHQVR 279
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
CM+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ K+ +
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENTKWIYDHEV 339
Query: 365 GHDLRLHLRNECQVYQLQAAIFHEAL 390
HL+ C + ++ + + L
Sbjct: 340 QEFNVTHLQQLCANHAVKTHMLYSKL 365
>gi|426251725|ref|XP_004019572.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Ovis aries]
Length = 481
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/340 (42%), Positives = 214/340 (62%), Gaps = 16/340 (4%)
Query: 27 EADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTL 86
E D ++ ++ L R +++E +V ++ + N + S G K K +
Sbjct: 3 ENDADRIQTEKLLQRVQELEQEVKRLKKEQANNKDANIRENSSGAGG-----KAKRAFDF 57
Query: 87 NHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
+ H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V +++ S+Y RCGR
Sbjct: 58 SAHGQRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-VENRQTSNYHRCGR 116
Query: 147 TDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
TDKGVS+ GQVI++ LRS+ K ++ + ++ + V + + EI Y +LNRVLP DIRV
Sbjct: 117 TDKGVSAFGQVISLDLRSHFPKGRDSEDFNLKDEVND--VATEIRYTHILNRVLPPDIRV 174
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-V 264
+ W+P T FSARFSC+ R Y+YFF NL++ M A +K+VG HDFRN CKMD AN V
Sbjct: 175 LAWAPVETSFSARFSCLERTYRYFFPCANLDIVTMNYAAQKYVGTHDFRNLCKMDVANGV 234
Query: 265 HNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
N++R + S ++ + E QLC ++ G AFL+HQVRCM+A+LF+IGQG+E
Sbjct: 235 TNFQRTILSAQVQRVGQNLAEEGWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGME 294
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+VI+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 295 KPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKW 334
>gi|327282044|ref|XP_003225754.1| PREDICTED: tRNA pseudouridine synthase 3-like [Anolis carolinensis]
Length = 455
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 146/351 (41%), Positives = 215/351 (61%), Gaps = 30/351 (8%)
Query: 14 SQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKT 73
S+ E L +++ELE +++E+++ + E +T + N+ T
Sbjct: 6 SETEKLLKKIQELEET------------VQRLEERLANHKEAPSTAI--NQPT------L 45
Query: 74 GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV 133
GK K ++ + + +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V
Sbjct: 46 GKTKRHQQRPFDFDAYGRRHVALKIAYLGWEYQGFASQENTNNTIEEKLFEALGKTRL-V 104
Query: 134 ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR 193
+++ S+Y RCGRTDKGVS+ GQVI++ LRSN+ E N T + + +EI Y
Sbjct: 105 KNRQTSNYHRCGRTDKGVSAFGQVISLDLRSNLPE---NKPGDTATNKATKASEEIHYTH 161
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
+LN+VLP DIRV+ W+P +FSARF+C+ R Y+YFF L+++ M A +KFVG HDF
Sbjct: 162 ILNQVLPPDIRVLAWAPVEPNFSARFNCLKRTYRYFFPCATLDVALMNRAAQKFVGTHDF 221
Query: 254 RNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGNQ-----LCAIKIRGSAFLWHQVRCMV 307
RN CKMD AN V ++ R + + E+ P E Q + ++ G AFL+HQVRCM+
Sbjct: 222 RNLCKMDVANGVTSFHRTILAAEVQPVDGESETEQQNPFRMYYFEVTGQAFLYHQVRCMM 281
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
A+LF+IGQ +E ++I+ LLD PRKPQY+MA E PLVL CDF+ L++
Sbjct: 282 AILFLIGQRMERPEIIDELLDIEKNPRKPQYSMAVEFPLVLYDCDFENLQW 332
>gi|227499255|ref|NP_075781.3| tRNA pseudouridine(38/39) synthase [Mus musculus]
gi|52783242|sp|Q9JI38.2|PUS3_MOUSE RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|22137577|gb|AAH29253.1| Pseudouridine synthase 3 [Mus musculus]
gi|148693450|gb|EDL25397.1| pseudouridine synthase 3, isoform CRA_c [Mus musculus]
Length = 481
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 215/355 (60%), Gaps = 35/355 (9%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q+E L NRVKELE + +L K + + + ++D + + EN
Sbjct: 7 RNQIEKLLNRVKELEQEVERL----------KKKKEQANNIKDSS--IREN------SLG 48
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
+GK K S H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 49 SGKAKRAFDFSA----HGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL- 103
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEID 190
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS T+ S ++ E + EI
Sbjct: 104 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP---TSRDSEDSNLKHEADDLAKEIR 160
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
Y +LNRVLP DIRV+ W+P FSARFSC+ R Y+YFF R +L+++ M A +K+VG
Sbjct: 161 YTHILNRVLPADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGT 220
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQV 303
HDFRN CKMD AN V N++R + ++ S E QLC ++ G AFL+HQV
Sbjct: 221 HDFRNLCKMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQV 280
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
RCM+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ K+
Sbjct: 281 RCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCKFENTKW 335
>gi|26347775|dbj|BAC37536.1| unnamed protein product [Mus musculus]
Length = 481
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 153/355 (43%), Positives = 215/355 (60%), Gaps = 35/355 (9%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q+E L NRVKELE + +L K + + + ++D + + EN
Sbjct: 7 RNQIEKLLNRVKELEQEVERL----------KKKKEQANNIKDSS--IREN------SLG 48
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
+GK K S H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 49 SGKAKRAFDFSA----HGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL- 103
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEID 190
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS T+ S ++ E + EI
Sbjct: 104 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP---TSRDSEDSNLKHEADDLAKEIR 160
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
Y +LNRVLP DIRV+ W+P FSARFSC+ R Y+YFF R +L+++ M A +K+VG
Sbjct: 161 YTHILNRVLPADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGT 220
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQV 303
HDFRN CKMD AN V N++R + ++ S E QLC ++ G AFL+HQV
Sbjct: 221 HDFRNLCKMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQV 280
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
RCM+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ K+
Sbjct: 281 RCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCKFENTKW 335
>gi|410972303|ref|XP_003992599.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Felis catus]
Length = 480
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 145/336 (43%), Positives = 210/336 (62%), Gaps = 15/336 (4%)
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE 138
K K + + H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V ++
Sbjct: 49 KAKRAFDFSAHGRRHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-VESRQT 107
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNR 197
S+Y RCGRTDKGVS+ GQVI++ LRS+ K+ + + ++ + V + EI Y +LNR
Sbjct: 108 SNYHRCGRTDKGVSAFGQVISLDLRSHFPKDRASEDCNLKDEVSD--AAKEIRYTHILNR 165
Query: 198 VLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFC 257
VLP DIRV+ W+P FSARFSC+ R Y+YFF R +L++ AM A +K+VG HDFRN C
Sbjct: 166 VLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIVAMNDAAQKYVGTHDFRNLC 225
Query: 258 KMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVL 310
KMD AN V N++R + S ++ S E QLC ++ G AFL+HQVRCM+A+L
Sbjct: 226 KMDVANGVINFQRTILSAQVQLVGQSLDKERWQEPFQLCQFEVIGQAFLYHQVRCMMAIL 285
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRL 370
F+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +
Sbjct: 286 FLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDREVQEFNVT 345
Query: 371 HLRNECQVYQLQAAIFHEAL--LNC--LPLANGLEI 402
HL+ + ++ + + L L+C +P G E+
Sbjct: 346 HLQQLWANHAVKTHMLYSMLQGLDCVAVPCGTGPEM 381
>gi|47214586|emb|CAG00940.1| unnamed protein product [Tetraodon nigroviridis]
Length = 412
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 159/381 (41%), Positives = 220/381 (57%), Gaps = 21/381 (5%)
Query: 14 SQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKT 73
S EAL RVKELEA+ KL S+L EK + E + E N K
Sbjct: 1 SMSEALLQRVKELEAELEKLKSQL-----EKRSNDAKPIPEPSPSSAETNCPPTGNAIKR 55
Query: 74 GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV 133
GKK VK + H +R+VAL++ Y G + GFA N + TVE+ +F+AL KT L+
Sbjct: 56 GKKAVKNRPLDFFAHP-RRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKT-CLI 113
Query: 134 ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE----DEI 189
D++ S+Y RCGRTDKGVS+ QVI I RS + C + E V ++ E+
Sbjct: 114 QDRQSSNYHRCGRTDKGVSAFSQVITIESRST-QFCGGLGVKLPENVDADKKSQTAVSEL 172
Query: 190 DYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVG 249
YV++LNRVLP DIR+ W+PA FSARF C SR Y+Y+F R +LN+ M A +++ G
Sbjct: 173 PYVKMLNRVLPHDIRIWNWAPAAEGFSARFDCQSRTYRYYFPRGSLNVELMADAAERYEG 232
Query: 250 EHDFRNFCKMDAAN-VHNYKRHVTSFEISPC----YISFEGNQLCAIKIRGSAFLWHQVR 304
HDFRN CKMD N V ++R + S ++P S + + ++RG AFL+HQVR
Sbjct: 233 THDFRNLCKMDVGNGVLQFERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVR 292
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
CM+A+L +IGQ LE+ ++I LLD PRKPQY+MA + PLVL C F+GL + S D
Sbjct: 293 CMMALLLLIGQKLEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLYHCHFEGLDWQQSNDE 352
Query: 365 GHDLRLHLRNECQVYQLQAAI 385
+ H+ + Q + Q+A+
Sbjct: 353 AN----HVLSTLQHHWTQSAV 369
>gi|149716663|ref|XP_001505142.1| PREDICTED: tRNA pseudouridine synthase 3 [Equus caballus]
Length = 479
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 149/340 (43%), Positives = 211/340 (62%), Gaps = 18/340 (5%)
Query: 27 EADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTL 86
E D ++ ++ L R +++E +V E R+ SG TGK K S
Sbjct: 3 ENDIDRIQTEKLLKRVQELEQEVQRLKEQTNNKDSNIRENYSG---TGKAKRAFDFSA-- 57
Query: 87 NHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL V ++ S+Y RCGR
Sbjct: 58 --HGRRHVALRIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-VESRQTSNYHRCGR 114
Query: 147 TDKGVSSVGQVIAIYLRSNIKEC-NTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
TDKGVS+ GQVI++ LRS+ ++ + ++ + V + EI Y +LNRVLP DIRV
Sbjct: 115 TDKGVSAFGQVISLDLRSHFPNGRDSEDFNLKDEVND--AAKEIRYTHILNRVLPPDIRV 172
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-V 264
+ W+P FSARFSC+ R Y+YFF R +L++ M SA +K+VG HDFRN CKMD AN V
Sbjct: 173 LAWAPVEPSFSARFSCLERTYRYFFPRADLDIITMNSAAQKYVGTHDFRNLCKMDVANGV 232
Query: 265 HNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
N++R + S ++ S E QLC ++ G AFL+HQVRCM+A+LF+IGQG+E
Sbjct: 233 INFQRTILSAQVQLVGQSLAEERGQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGME 292
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+VI+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 293 KPEVIDELLNIQKNPQKPQYSMAVEFPLVLYDCKFENIKW 332
>gi|291383625|ref|XP_002708689.1| PREDICTED: CG3045-like [Oryctolagus cuniculus]
Length = 480
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/339 (42%), Positives = 207/339 (61%), Gaps = 15/339 (4%)
Query: 27 EADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTL 86
E D + ++ L R +++E +V ++ + N + + G TGK K S
Sbjct: 3 ENDTDRNQTEKLLKRIQELEQEVQRLKKEQGNYKDSNIRENASG--TGKAKRTFDFSA-- 58
Query: 87 NHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL V ++ S+Y RCGR
Sbjct: 59 --HGRRHVALRIAYLGWGYQGFASQENTTNTIEEKLFEALTKTRL-VESRQTSNYHRCGR 115
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ GQVI++ LRS ++ S + + +EI Y +LNRVLP DIR++
Sbjct: 116 TDKGVSAFGQVISLDLRSQFPMAK-DSESCNSKDEANDVAEEIRYTHILNRVLPPDIRIL 174
Query: 207 GWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VH 265
W+P FSARFSC+ R Y YFF R +L++ M A +K+VG HDFRN CKMD AN V
Sbjct: 175 AWAPVDPGFSARFSCLERTYHYFFPRADLDIVTMNCAAQKYVGTHDFRNLCKMDVANGVI 234
Query: 266 NYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
N++R + S ++ S E QLC ++ G AFL+HQVRCM+A+LF+IGQG+E
Sbjct: 235 NFQRTILSAKVQLVGQSLGEERWQEHFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEK 294
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
D+I+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 295 PDIIDELLNVEKNPQKPQYSMAVEFPLVLHDCKFENIKW 333
>gi|347800645|ref|NP_001231651.1| pseudouridylate synthase 3 [Sus scrofa]
Length = 479
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 215/352 (61%), Gaps = 36/352 (10%)
Query: 15 QLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTG 74
Q E L RV+ELE + +L + E+ DK D R++ SGG +
Sbjct: 10 QTEKLLKRVQELEQEVQRL-------KQEQANDK------DSKV-----RESSSGGRRA- 50
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA 134
K + + H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V
Sbjct: 51 ------KRAFDFSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-VE 103
Query: 135 DKKESHYSRCGRTDKGVSSVGQVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVR 193
+++ S+Y RCGRTDKGVS+ GQVI++ LRS+ +K+ ++ + ++ + V + EI Y
Sbjct: 104 NRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFLKDKDSEDINLKDEVND--ATKEIRYTH 161
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
+LNRVLP DIRV+ W+P FSARFSC+ R Y+YFF +L++ M A +K+ G HDF
Sbjct: 162 ILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPHADLDIVTMNYAAQKYDGTHDF 221
Query: 254 RNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGN------QLCAIKIRGSAFLWHQVRCM 306
RN CKMD AN V N++R + S ++ S E QLC ++ G AFL+HQVRCM
Sbjct: 222 RNLCKMDVANGVTNFQRTILSAQVQLLSQSLEEERWQEAFQLCQFEVVGQAFLYHQVRCM 281
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+AVLF IGQG+E +VI+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 282 MAVLFPIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKW 333
>gi|348573933|ref|XP_003472745.1| PREDICTED: tRNA pseudouridine synthase 3-like [Cavia porcellus]
Length = 480
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/341 (43%), Positives = 210/341 (61%), Gaps = 18/341 (5%)
Query: 27 EADNAKLLSKLSLCRCEKIEDKVHD-GVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGT 85
EAD + +++ L R +++E +V E + + N K S G K+
Sbjct: 3 EADTDRNQTEMLLKRIQELEQEVQRLKKEQSNNIKDPNIKENSSGSAKAKRVF------D 56
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCG 145
+ H +R VAL++ Y G + GFAS N + T+E ++F+A+ KTRL + ++ S Y RCG
Sbjct: 57 FSAHSRRRVALRIAYLGWGYQGFASQENTDNTIEEKLFEAMTKTRL-IESRQTSSYHRCG 115
Query: 146 RTDKGVSSVGQVIAIYLRSNIKEC-NTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQVI++ LRS ++ + ++ V ++ EI Y +LNRVLP DIR
Sbjct: 116 RTDKGVSAFGQVISLDLRSQFPRGKDSEDLNLKNEVSDD--AKEIRYTHILNRVLPPDIR 173
Query: 205 VIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN- 263
V+ W+P FSARFSC+ R Y+YFF +L++ M A +K+VG HDFRN CKMD AN
Sbjct: 174 VLAWAPVEPSFSARFSCLERTYRYFFPLADLDIVRMNYAAQKYVGTHDFRNLCKMDVANG 233
Query: 264 VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V N++R + S E+ S C S+ E QLC ++ G AFL+HQVRCM+AVLF+IGQG+
Sbjct: 234 VINFQRTILSAEVRLVGQSLCAESWQEPFQLCQFEVTGQAFLYHQVRCMMAVLFLIGQGM 293
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
E VI+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 294 EEPQVIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKW 334
>gi|348508841|ref|XP_003441961.1| PREDICTED: tRNA pseudouridine synthase 3-like [Oreochromis
niloticus]
Length = 467
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 153/361 (42%), Positives = 216/361 (59%), Gaps = 20/361 (5%)
Query: 17 EALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTE--SGGCKTG 74
+ L R+KELEA+ KL S+L K + D + + E+ K++ +G K
Sbjct: 3 DVLIQRIKELEAELEKLRSQL------KESSETGDVEMSSSPSLNEDCKSDGNAGSSKKE 56
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA 134
+KK + + H +R+VAL++ Y G + GFA N + TVE+ +F+AL KTRL +
Sbjct: 57 RKKSGKDRPFDFSAHPRRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALLKTRL-IQ 115
Query: 135 DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQ-----EEQIEDEI 189
D++ S+Y RCGRTDKGVS+ QVI I LRS + C ++ E V E+
Sbjct: 116 DRQSSNYHRCGRTDKGVSAFSQVITIDLRST-QFCAGLGITLPENVDVSTKATSSATSEL 174
Query: 190 DYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVG 249
YV++LNRVLP+DIRV+ W+P FSARF C SR Y+Y+F R +L+++ M A K++ G
Sbjct: 175 PYVKMLNRVLPQDIRVLDWAPVAEGFSARFDCQSRTYRYYFPRGSLDVALMAEAAKRYEG 234
Query: 250 EHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYI----SFEGNQLCAIKIRGSAFLWHQVR 304
HDFRN CKMD N V ++R + S + P S + L +I+G AFL+HQVR
Sbjct: 235 THDFRNLCKMDVGNGVLQFERTILSATVKPAQPQHASSTDQYDLFIFEIKGLAFLYHQVR 294
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
CM+AVL +IGQ LE++D+I LLD PRKPQY+MA + PLVL C F+GL +T +
Sbjct: 295 CMMAVLLLIGQKLEALDIINQLLDVENNPRKPQYSMAVDYPLVLYDCHFEGLSWTRESEE 354
Query: 365 G 365
G
Sbjct: 355 G 355
>gi|16550495|dbj|BAB70990.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/397 (39%), Positives = 234/397 (58%), Gaps = 35/397 (8%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED R+ SG K
Sbjct: 8 RNQTEKLLKRVRELEQEVQRL-------KKEQAKNK-----EDSNI-----RENSSGAGK 50
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 51 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS ++ + + +EI Y
Sbjct: 103 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR-GRDSEDLNVKEEANAAAEEIRYT 161
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG HD
Sbjct: 162 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHD 221
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQVRC 305
FRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQVRC
Sbjct: 222 FRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRC 281
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +A
Sbjct: 282 MMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQ 341
Query: 366 HDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGL 400
HL+ + ++ + + L L+ +P+ G+
Sbjct: 342 EFNITHLQQLWANHAVKTHMLYSMLQGLDTVPVPCGI 378
>gi|9652099|gb|AAF91402.1|AF266505_1 pseudouridine synthase 3 [Mus musculus]
Length = 481
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 215/355 (60%), Gaps = 35/355 (9%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q+E L NRVKELE + +L K + + + ++D + + EN
Sbjct: 7 RNQIEKLLNRVKELEQEVERL----------KKKKEQANNIKDSS--IREN------SLG 48
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
+GK K S H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 49 SGKAKRAFDFSA----HGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL- 103
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEID 190
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS T+ S ++ E + EI
Sbjct: 104 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP---TSRDSEDSNLKHEADDLAKEIR 160
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
Y +LNRVLP DIRV+ W+P FSARFSC+ R Y+YFF R +L+++ M A +K+VG
Sbjct: 161 YTHILNRVLPADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGT 220
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQV 303
HDFRN CKMD AN V +++R + ++ S E QLC ++ G AFL+HQV
Sbjct: 221 HDFRNLCKMDVANGVIDFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQV 280
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
RCM+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ K+
Sbjct: 281 RCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQYSMAVEFPLVLYDCKFENTKW 335
>gi|297690638|ref|XP_002822721.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pongo abelii]
Length = 481
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/359 (42%), Positives = 217/359 (60%), Gaps = 33/359 (9%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED R+ SG K
Sbjct: 8 RNQTEKLLKRVQELEQEVQRL-------KKEQAKNK-----EDSNI-----RENSSGAGK 50
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 51 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS ++ + +EI Y
Sbjct: 103 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR-GKDSEDFNVKGEANAAAEEIRYT 161
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG HD
Sbjct: 162 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHD 221
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQVRC 305
FRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQVRC
Sbjct: 222 FRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRC 281
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +A
Sbjct: 282 MMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAIEFPLVLYDCKFENVKWIYDQEA 340
>gi|403262406|ref|XP_003923581.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Saimiri boliviensis
boliviensis]
Length = 477
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/359 (42%), Positives = 219/359 (61%), Gaps = 37/359 (10%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED N + SG K
Sbjct: 8 RNQTEKLLRRVQELEHEVQRL-------KKEQAKNK-----EDS------NIRENSGAGK 49
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 50 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 101
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ ++Y RCGRTDKGVS+ GQVI++ LRS S V+EE E EI Y
Sbjct: 102 VESRQTANYHRCGRTDKGVSAFGQVISLDLRSQFPR---GRDSEDFNVKEEAAE-EIRYT 157
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG HD
Sbjct: 158 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHD 217
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISFEGN-QLCAIKIRGSAFLWHQVRC 305
FRN CKMD AN V N++R + S ++ SP ++ QLC ++ G AFL+HQVRC
Sbjct: 218 FRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEERWQVPFQLCQFEVTGQAFLYHQVRC 277
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +A
Sbjct: 278 MMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEA 336
>gi|334330487|ref|XP_001371991.2| PREDICTED: tRNA pseudouridine synthase 3-like [Monodelphis
domestica]
Length = 576
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 152/389 (39%), Positives = 230/389 (59%), Gaps = 37/389 (9%)
Query: 14 SQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKT 73
+Q E L R++ELE + +L + + R I+ D +T V
Sbjct: 9 NQTETLLKRIQELEREVQRLQQEQANKRSPNIKG-------DSSTEV------------- 48
Query: 74 GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV 133
GK K +++ + + + +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V
Sbjct: 49 GKPKKRQQRAFDFSAYGQRHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-V 107
Query: 134 ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYV 192
++ S+Y RCGRTDKGVS+ GQVI++ LRS + ++ + + ++ +TV + +EI Y
Sbjct: 108 ESRQTSNYHRCGRTDKGVSAFGQVISLNLRSQLPRDKDPEDKNLKDTVNDS--VEEICYT 165
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIRV+ W+ + FSARFSC+ R Y+YFF NL++ AM A +K+VG HD
Sbjct: 166 HILNRVLPPDIRVLAWATVESSFSARFSCLERTYRYFFPCANLDIEAMNDAAQKYVGTHD 225
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEISPCYISF----------EGNQLCAIKIRGSAFLWH 301
FRN CKMD AN V N++R + S ++ ++F E QLC ++ G AFL+H
Sbjct: 226 FRNLCKMDVANGVINFQRTILSAKVQ--LVAFGSPEEKLQQQESFQLCQFEVIGQAFLYH 283
Query: 302 QVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCS 361
QVRCM+A+LF+IGQ +E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 284 QVRCMMAILFLIGQRMEKAEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYD 343
Query: 362 LDAGHDLRLHLRNECQVYQLQAAIFHEAL 390
+ HL+ Y ++ + + L
Sbjct: 344 REVQEFNVTHLQQLWASYAVKTHMLYSML 372
>gi|114641137|ref|XP_001148378.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan troglodytes]
gi|410211820|gb|JAA03129.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410257886|gb|JAA16910.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410299778|gb|JAA28489.1| pseudouridylate synthase 3 [Pan troglodytes]
gi|410328501|gb|JAA33197.1| pseudouridylate synthase 3 [Pan troglodytes]
Length = 481
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/397 (39%), Positives = 234/397 (58%), Gaps = 35/397 (8%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED R+ SG K
Sbjct: 8 RNQTEKLLKRVRELEQEVQRL-------KKEQAKNK-----EDSNI-----RENSSGAGK 50
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 51 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS+ ++ + +EI Y
Sbjct: 103 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFPR-GRDSEDFNVKEEANAAAEEIRYT 161
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG HD
Sbjct: 162 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHD 221
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQVRC 305
FRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQVRC
Sbjct: 222 FRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRC 281
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +A
Sbjct: 282 MMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQ 341
Query: 366 HDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGL 400
HL+ + ++ + + L L+ +P+ G+
Sbjct: 342 EFNITHLQQLWANHAVKTHMLYSMLQGLDTVPVPCGI 378
>gi|119588071|gb|EAW67667.1| pseudouridylate synthase 3 [Homo sapiens]
Length = 481
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 157/397 (39%), Positives = 233/397 (58%), Gaps = 35/397 (8%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED R+ SG K
Sbjct: 8 RNQTEKLLKRVRELEQEVQRL-------KKEQAKNK-----EDSNI-----RENSSGAGK 50
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 51 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS ++ + +EI Y
Sbjct: 103 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYT 161
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG HD
Sbjct: 162 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHD 221
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQVRC 305
FRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQVRC
Sbjct: 222 FRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRC 281
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +A
Sbjct: 282 MMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQ 341
Query: 366 HDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGL 400
HL+ + ++ + + L L+ +P+ G+
Sbjct: 342 EFNITHLQQLWANHAVKTHMLYSMLQGLDTVPVPCGI 378
>gi|14919399|gb|AAH04822.1| Pseudouridylate synthase 3 [Homo sapiens]
gi|124000287|gb|ABM87652.1| pseudouridylate synthase 3 [synthetic construct]
gi|124000289|gb|ABM87653.1| pseudouridylate synthase 3 [synthetic construct]
gi|157928602|gb|ABW03597.1| pseudouridylate synthase 3 [synthetic construct]
gi|157929242|gb|ABW03906.1| pseudouridylate synthase 3 [synthetic construct]
Length = 481
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 157/397 (39%), Positives = 233/397 (58%), Gaps = 35/397 (8%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED R+ SG K
Sbjct: 8 RNQTEKLLKRVRELEQEVQRL-------KKEQAKNK-----EDSNI-----RENSSGAGK 50
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 51 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS ++ + +EI Y
Sbjct: 103 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYT 161
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG HD
Sbjct: 162 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHD 221
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQVRC 305
FRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQVRC
Sbjct: 222 FRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRC 281
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +A
Sbjct: 282 MMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQ 341
Query: 366 HDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGL 400
HL+ + ++ + + L L+ +P+ G+
Sbjct: 342 EFNITHLQQLWANHAVKTHMLYSMLQGLDTVPVPCGI 378
>gi|126302589|sp|Q9BZE2.3|PUS3_HUMAN RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|12276176|gb|AAG50280.1|AF325689_1 FKSG32 [Homo sapiens]
gi|189055315|dbj|BAG36917.1| unnamed protein product [Homo sapiens]
Length = 481
Score = 267 bits (683), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 156/397 (39%), Positives = 233/397 (58%), Gaps = 35/397 (8%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED R+ +G K
Sbjct: 8 RNQTEKLLKRVRELEQEVQRL-------KKEQAKNK-----EDSNI-----RENSAGAGK 50
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 51 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS ++ + +EI Y
Sbjct: 103 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYT 161
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG HD
Sbjct: 162 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHD 221
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQVRC 305
FRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQVRC
Sbjct: 222 FRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRC 281
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +A
Sbjct: 282 MMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQ 341
Query: 366 HDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGL 400
HL+ + ++ + + L L+ +P+ G+
Sbjct: 342 EFNITHLQQLWANHAVKTHMLYSMLQGLDTVPVPCGI 378
>gi|344291496|ref|XP_003417471.1| PREDICTED: tRNA pseudouridine synthase 3-like [Loxodonta africana]
Length = 480
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 145/354 (40%), Positives = 218/354 (61%), Gaps = 36/354 (10%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E++ +K + +R+ +S G +
Sbjct: 8 RNQTEKLVKRVQELEEEVQRL-------KKEQLNNK------------DTSRREDSSGSR 48
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
K+ + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 49 KAKR------AFDFSAHGRRHVALRIAYLGWSYQGFASQENTNNTIEEKLFEALTKTRL- 101
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDY 191
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS+ K+ ++ + + + + EI Y
Sbjct: 102 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFPKDKDSEDFQLKDEANDSA--KEIRY 159
Query: 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L+++ M A +K+VG H
Sbjct: 160 THILNRVLPPDIRILAWAPVEPAFSARFSCLERTYRYFFPRADLDIAIMSYAAQKYVGTH 219
Query: 252 DFRNFCKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVR 304
DFRN CKMD AN V N++R + S ++ S E QLC ++ G AFL+HQVR
Sbjct: 220 DFRNLCKMDVANGVINFQRTILSAQVQLVGQSRGEDRWEESFQLCQFEVTGQAFLYHQVR 279
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
CM+A+LF+IGQG+E ++I+ LL+ +KPQY+MA E PLVL C F+ +K+
Sbjct: 280 CMMAILFLIGQGMEKPEIIDELLNIEKNSQKPQYSMAVEFPLVLYDCKFENIKW 333
>gi|199559785|ref|NP_112597.3| tRNA pseudouridine(38/39) synthase isoform 1 [Homo sapiens]
Length = 481
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 156/397 (39%), Positives = 233/397 (58%), Gaps = 35/397 (8%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED R+ +G K
Sbjct: 8 RNQTEKLLKRVRELEQEVQRL-------KKEQAKNK-----EDSNI-----RENSAGAGK 50
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 51 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS ++ + +EI Y
Sbjct: 103 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYT 161
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG HD
Sbjct: 162 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHD 221
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQVRC 305
FRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQVRC
Sbjct: 222 FRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRC 281
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +A
Sbjct: 282 MMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQ 341
Query: 366 HDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGL 400
HL+ + ++ + + L L+ +P+ G+
Sbjct: 342 EFNITHLQQLWANHAVKTHMLYSMLQGLDTVPVPCGI 378
>gi|395846476|ref|XP_003795929.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Otolemur garnettii]
Length = 480
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 209/353 (59%), Gaps = 34/353 (9%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L R E+ +K D R+ SG K
Sbjct: 8 RNQTEKLLKRVRELEQEVQRL-------RKERANNKDSDI-----------RENPSGSGK 49
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
K + + H +R++ALK+ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 50 A-------KRAFDFSAHGRRHIALKMAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL- 101
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS + ++ + EI Y
Sbjct: 102 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR-DRDSEDFNLKDEASSAAKEIRYT 160
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF +L++ M A +K+VG HD
Sbjct: 161 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPHADLDIETMNYAAQKYVGTHD 220
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRC 305
FRNFCKMD AN V N++R + S ++ S E QLC ++ G AFL+HQVRC
Sbjct: 221 FRNFCKMDVANGVINFQRTILSAQVQLVGQSLSEERWQEPFQLCQFEVIGQAFLYHQVRC 280
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 281 MMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAIEFPLVLYDCKFENIKW 333
>gi|281338704|gb|EFB14288.1| hypothetical protein PANDA_016156 [Ailuropoda melanoleuca]
Length = 479
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 137/289 (47%), Positives = 189/289 (65%), Gaps = 13/289 (4%)
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE 138
K K + + H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V ++
Sbjct: 49 KAKRAFDFSAHGRRHVALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL-VESRQT 107
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEIDYVRVLN 196
S+Y RCGRTDKGVS+ GQVI++ LRS+ + AS V++E EI Y +LN
Sbjct: 108 SNYHRCGRTDKGVSAFGQVISLDLRSHFLK---GRASEDFHVKDEVSDAAKEIRYTHILN 164
Query: 197 RVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNF 256
RVLP DIRV+ W+P FSARFSC+ R Y+YFF R +L++ M A +K+VG HDFRN
Sbjct: 165 RVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMNYAAQKYVGTHDFRNL 224
Query: 257 CKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAV 309
CKMD AN V N++R + S ++ S E QLC ++ G AFL+HQVRCM+A+
Sbjct: 225 CKMDVANGVINFQRTILSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAI 284
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +++
Sbjct: 285 LFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIQW 333
>gi|301782183|ref|XP_002926505.1| PREDICTED: tRNA pseudouridine synthase 3-like [Ailuropoda
melanoleuca]
Length = 480
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/289 (47%), Positives = 189/289 (65%), Gaps = 13/289 (4%)
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE 138
K K + + H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V ++
Sbjct: 49 KAKRAFDFSAHGRRHVALKIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL-VESRQT 107
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEIDYVRVLN 196
S+Y RCGRTDKGVS+ GQVI++ LRS+ + AS V++E EI Y +LN
Sbjct: 108 SNYHRCGRTDKGVSAFGQVISLDLRSHFLK---GRASEDFHVKDEVSDAAKEIRYTHILN 164
Query: 197 RVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNF 256
RVLP DIRV+ W+P FSARFSC+ R Y+YFF R +L++ M A +K+VG HDFRN
Sbjct: 165 RVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMNYAAQKYVGTHDFRNL 224
Query: 257 CKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAV 309
CKMD AN V N++R + S ++ S E QLC ++ G AFL+HQVRCM+A+
Sbjct: 225 CKMDVANGVINFQRTILSAQVQLVGQSLDKETWQEAFQLCQFEVTGQAFLYHQVRCMMAI 284
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +++
Sbjct: 285 LFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENIQW 333
>gi|397498358|ref|XP_003819951.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Pan paniscus]
Length = 481
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 156/397 (39%), Positives = 233/397 (58%), Gaps = 35/397 (8%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED R+ SG K
Sbjct: 8 RNQTEKLLKRVRELEQEVQRL-------KKEQAKNK-----EDSNI-----RENSSGAGK 50
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 51 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS+ ++ + +EI Y
Sbjct: 103 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSHFPR-GRDSEDFNVKEEANAAAEEIRYT 161
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG HD
Sbjct: 162 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHD 221
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQVRC 305
FRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQVRC
Sbjct: 222 FRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRC 281
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ + + +A
Sbjct: 282 MMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVNWIYDQEAQ 341
Query: 366 HDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGL 400
HL+ + ++ + + L L+ +P+ G+
Sbjct: 342 EFNITHLQQLWANHAVKTHMLYSMLQGLDTVPVPCGI 378
>gi|410895609|ref|XP_003961292.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Takifugu
rubripes]
Length = 447
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 158/394 (40%), Positives = 229/394 (58%), Gaps = 36/394 (9%)
Query: 1 MSEAKQELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLV 60
MS+ + + L+++LE L++++KE +D A LLS LS CE +
Sbjct: 1 MSKDLMQRVKELEAELEKLKSQLKEGSSD-AALLSDLSPSPCE--------------SQC 45
Query: 61 EENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVES 120
N + K GK+ + + H +R+VAL++ Y G + GFA N TVE+
Sbjct: 46 TPNDNVSTRRKKAGKRPLD------FSAHPRRHVALRLAYLGWSYQGFAVQENTGHTVEA 99
Query: 121 EIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETV 180
+F+AL+KT L+ D++ S+Y RCGRTDKGVS+ QVI I LRS + C + ETV
Sbjct: 100 RLFEALQKT-CLIQDRQTSNYHRCGRTDKGVSAFSQVITIDLRST-QFCGGLGVRLPETV 157
Query: 181 ----QEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLN 236
+ + E+ YV++LNRVLP+DIR++ W+PA FSARF C SR Y+Y+F R LN
Sbjct: 158 DAGAKTKAAVSELPYVKMLNRVLPQDIRILDWAPAEEGFSARFDCQSRTYRYYFPRGALN 217
Query: 237 LSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPC----YISFEGNQLCAI 291
L M A K++ G+HDFRN CKMD N V ++R + S I P S + +
Sbjct: 218 LELMADAAKRYEGKHDFRNLCKMDVGNGVLQFERTILSASIRPVNPIHASSTDQYDIFIF 277
Query: 292 KIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSC 351
+++G AFL+HQVRCM+A+L +IGQ LE+ ++I LLD PRKPQY+MA + PLVL C
Sbjct: 278 EVKGLAFLYHQVRCMMALLLLIGQELEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLHDC 337
Query: 352 DFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAI 385
F+GL + S D + H+ + Q + Q+A+
Sbjct: 338 HFEGLDWQQSNDEVN----HVLSTLQHHWTQSAV 367
>gi|355714592|gb|AES05053.1| pseudouridylate synthase 3 [Mustela putorius furo]
Length = 479
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 135/288 (46%), Positives = 191/288 (66%), Gaps = 11/288 (3%)
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE 138
K K + + H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V ++
Sbjct: 49 KAKRAFDFSAHGRRHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-VESRQT 107
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNR 197
S+Y RCGRTDKGVS+ GQVI++ LRS+ +K + + ++ + V + EI Y +LNR
Sbjct: 108 SNYHRCGRTDKGVSAFGQVISLDLRSHFLKGRASEDCNVKDDVYD--AAKEIRYTHILNR 165
Query: 198 VLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFC 257
VLP DIRV+ W+P FSARFSC+ R Y+YFF R +L++ M A +K+VG HDFRN C
Sbjct: 166 VLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDILTMNHAAQKYVGTHDFRNLC 225
Query: 258 KMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVL 310
KMD AN V N++R + S ++ + E QLC ++ G AFL+HQVRCM+A+L
Sbjct: 226 KMDVANGVINFQRTILSAQVQLVGQTLDEETWQEPFQLCQFEVIGQAFLYHQVRCMMAIL 285
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
F+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 286 FLIGQGMEKPEIIDELLNVEKNPQKPQYSMAVEFPLVLYDCKFENIKW 333
>gi|41056053|ref|NP_956361.1| tRNA pseudouridine synthase 3 [Danio rerio]
gi|29436973|gb|AAH49516.1| Zgc:56653 [Danio rerio]
Length = 460
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/390 (38%), Positives = 225/390 (57%), Gaps = 43/390 (11%)
Query: 17 EALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKK 76
E L+ RVK LE + +L ++L R E EE +T G + K+
Sbjct: 4 EVLRVRVKALEEELERLKAQL---RAE----------------TEEKSQTSESGSRQKKQ 44
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK 136
+V++ + H +R+VAL++ Y G ++ GFA N + TVE+ +F+AL KT+L + D+
Sbjct: 45 RVEKPFD--FSAHPRRHVALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKL-IQDR 101
Query: 137 KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE------QIEDEID 190
+ S Y RCGRTDKGVS+ QVI+I LRS +G TV + DE+
Sbjct: 102 QTSCYHRCGRTDKGVSAFSQVISIDLRST-----QYGGGLGVTVPADVDVKGKTSADELP 156
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
YV++LNRVLP DIR++ W+P + FSARF C SR Y+Y+F R +L+L M A K++ G
Sbjct: 157 YVKILNRVLPHDIRILQWAPVESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGT 216
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISF-----EGNQLCAIKIRGSAFLWHQVR 304
HDFRN CKMD N V ++R + S + P + + +QL +++G A L+HQVR
Sbjct: 217 HDFRNLCKMDVGNGVLQFQRTILSASVQPAQLPHPSVHNDPHQLFVFQVKGLALLYHQVR 276
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
CM+A+L +IGQ LE+ +VI+ LLD PRKPQY+MA + PLVL C F+G+ + ++
Sbjct: 277 CMMALLLLIGQKLEAPEVIDQLLDVEKNPRKPQYSMAVDYPLVLYDCHFEGVNWRNEIEE 336
Query: 365 GHDLRLHLRNECQVYQLQAAIFHEALLNCL 394
+H+ N + +Q A+ + LL +
Sbjct: 337 ----EIHILNTFHQHWVQNAVKTQILLGMI 362
>gi|332208632|ref|XP_003253411.1| PREDICTED: tRNA pseudouridine(38/39) synthase isoform 1 [Nomascus
leucogenys]
Length = 481
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 151/359 (42%), Positives = 216/359 (60%), Gaps = 33/359 (9%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q E L RV+ELE + +L + E+ ++K ED R+ SG K
Sbjct: 8 RNQTEKLLKRVQELEQEVQRL-------KKEQAKNK-----EDSNI-----RENSSGAGK 50
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
T K + + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 51 T-------KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRL- 102
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS + + +EI Y
Sbjct: 103 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR-GRESEDFNVKEEANAAAEEIRYT 161
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP DIR++ W+P FSARFSC+ R Y+YFF R +L++ M+ A +K+VG HD
Sbjct: 162 HILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHD 221
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQVRC 305
FRN CKMD AN V N++R + S ++ SP + E QLC ++ G AFL+HQVRC
Sbjct: 222 FRNLCKMDVANGVVNFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRC 281
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
M+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +A
Sbjct: 282 MMAILFLIGQGMEKPELIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEA 340
>gi|417401673|gb|JAA47712.1| Putative pseudouridylate synthase [Desmodus rotundus]
Length = 480
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 134/289 (46%), Positives = 190/289 (65%), Gaps = 11/289 (3%)
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE 138
K + + + H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL V ++
Sbjct: 49 KARRAFDFSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL-VESRQT 107
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNR 197
++Y RCGRTDKGVS+ GQVI++ LRS K+ ++ + ++ + V + EI Y +LNR
Sbjct: 108 ANYHRCGRTDKGVSAFGQVISLDLRSYFPKDRDSEDLNIKDGVGD--AAKEIRYTHILNR 165
Query: 198 VLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFC 257
VLP DIRV+ W+P FSARFSC+ R Y+YFF R +L++ AM A K+VG HDFRN C
Sbjct: 166 VLPADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIEAMNCAAHKYVGTHDFRNLC 225
Query: 258 KMDAAN-VHNYKRHVTSFEISPCYISFEGN------QLCAIKIRGSAFLWHQVRCMVAVL 310
KMD AN V N++R + S ++ S + QLC ++ G AFL+HQVRCM+AVL
Sbjct: 226 KMDVANGVINFQRTILSAQVKLVGQSLAEDGWQAPFQLCQFEVTGQAFLYHQVRCMMAVL 285
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359
F+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ + +
Sbjct: 286 FLIGQGMEEPEIIDELLNVEKNPQKPQYSMAVEFPLVLYDCKFENIPWV 334
>gi|395520653|ref|XP_003764440.1| PREDICTED: tRNA pseudouridine(38/39) synthase [Sarcophilus
harrisii]
Length = 506
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/359 (40%), Positives = 211/359 (58%), Gaps = 42/359 (11%)
Query: 14 SQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKT 73
+Q E L R++ELE + +L + + D T + TE
Sbjct: 36 NQTETLLKRIQELEREVQRLQQEQA----------------DKKTNIRGQSSTE-----V 74
Query: 74 GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV 133
GK K + + + + + +R+VAL++ Y G + GFAS N T+E ++F+AL KTRL V
Sbjct: 75 GKPKKRHERAFNFSAYGQRHVALRIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-V 133
Query: 134 ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI-----KECNTNNASMGETVQEEQIEDE 188
++ S+Y RCGRTDKGVS+ GQVI++ LRS + E + S+ +TV +E
Sbjct: 134 ESRQTSNYHRCGRTDKGVSAFGQVISLNLRSQLIGSKKPEDQSLKDSINDTV------EE 187
Query: 189 IDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFV 248
I Y +LNRVLP DIRV+ W+P FSARFSC+ R Y+YFF +L++ AM A +K+V
Sbjct: 188 IRYTHILNRVLPPDIRVLAWAPVEPSFSARFSCLERTYRYFFPCADLDIEAMNDAAQKYV 247
Query: 249 GEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYI--------SFEGNQLCAIKIRGSAFL 299
G HDFRN CKMD AN V N++R + S + + E QLC ++ G AFL
Sbjct: 248 GTHDFRNLCKMDVANGVINFQRTILSANVQLVALRDLEEKLQQQEPFQLCQFEVIGQAFL 307
Query: 300 WHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+HQVRCM+A+LF+IGQ +E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 308 YHQVRCMMAILFLIGQRMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLHDCKFENIKW 366
>gi|47208381|emb|CAF93145.1| unnamed protein product [Tetraodon nigroviridis]
Length = 409
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 153/377 (40%), Positives = 215/377 (57%), Gaps = 16/377 (4%)
Query: 14 SQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKT 73
S EAL RVKELEA+ KL S+L EK + E + E N K
Sbjct: 1 SMSEALLQRVKELEAELEKLKSQL-----EKRRNDAKPIPEPSPSSAETNCPPTGNAIKR 55
Query: 74 GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV 133
GKK VK + H +R+VAL++ Y G + GFA N + TVE+ +F+AL KT L+
Sbjct: 56 GKKAVKNRPLDFFAHP-RRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALHKT-CLI 113
Query: 134 ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR 193
D++ S+Y RCGRTDKGVS+ QV A+ ++ + + E+ YV+
Sbjct: 114 QDRQSSNYHRCGRTDKGVSAFSQVTAVQSLHTPPFSFKLPENVDADKKSQTAVSELPYVK 173
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
+LNRVLP DIR+ W+PA FSARF C SR Y+Y+F R +LN+ M A +++ G HDF
Sbjct: 174 MLNRVLPHDIRIWNWAPAAEGFSARFDCQSRTYRYYFPRGSLNVELMADAAERYEGTHDF 233
Query: 254 RNFCKMDAAN-VHNYKRHVTSFEISPC----YISFEGNQLCAIKIRGSAFLWHQVRCMVA 308
RN CKMD N V ++R + S ++P S + + ++RG AFL+HQVRCM+A
Sbjct: 234 RNLCKMDVGNGVLQFERTILSSSVTPVNPEHASSTDQYDIFVFEVRGLAFLYHQVRCMMA 293
Query: 309 VLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDL 368
+L +IGQ LE+ ++I LLD PRKPQY+MA + PLVL C F+GL + S D +
Sbjct: 294 LLLLIGQKLEAPEIINQLLDVQSNPRKPQYSMAVDYPLVLYHCHFEGLDWQQSNDEAN-- 351
Query: 369 RLHLRNECQVYQLQAAI 385
H+ + Q + Q+A+
Sbjct: 352 --HVLSTLQHHWTQSAV 366
>gi|432923365|ref|XP_004080439.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Oryzias
latipes]
Length = 471
Score = 264 bits (674), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 149/356 (41%), Positives = 212/356 (59%), Gaps = 24/356 (6%)
Query: 17 EALQNRVKELEADNAKLLSKLSLCR-----CEKIEDKVHDGVEDGTTLVEENRKTESGGC 71
++L R+KELEA+ KL S+L R E + D V D R +E
Sbjct: 3 DSLIGRIKELEAELEKLKSQLKESREAGGDVEMMSSSSADDVTD--------RGSEGNCT 54
Query: 72 KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL 131
+ +KK ++ H +R+VAL++ Y G + GFA N + TVE+ +F+AL KTRL
Sbjct: 55 RKERKKSGKERPFDFAAHPRRHVALRLAYLGWAYQGFAVQENTDNTVEARLFEALLKTRL 114
Query: 132 LVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGE----TVQEEQIED 187
+ D++ S+Y RCGRTDKGVS+ QVI I LRS + C ++ E +++ +
Sbjct: 115 -IQDRQSSNYHRCGRTDKGVSAFSQVITIDLRST-QFCGGLGVTVPEKVDPSIKSKAASS 172
Query: 188 EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKF 247
E+ YV++LNRVLP+DIR++ +P FSARF C SR Y+Y+F R +L+++ ME A K++
Sbjct: 173 ELPYVKMLNRVLPQDIRILDCAPVAEGFSARFDCQSRTYRYYFPRGSLDVALMEDAAKRY 232
Query: 248 VGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCY----ISFEGNQLCAIKIRGSAFLWHQ 302
G HDFRN CKMD N V ++R + S I P + S + L +++G AFL+HQ
Sbjct: 233 EGTHDFRNLCKMDVGNGVLQFERTILSATIRPMWSQQASSMDQYSLFVFEVKGLAFLYHQ 292
Query: 303 VRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
VRCM+AVL +IGQ LE +I LLD PRKPQY+MA + PLVL C F+GL +
Sbjct: 293 VRCMMAVLLLIGQKLEDPQIISQLLDVENNPRKPQYSMAVDYPLVLHHCHFEGLSW 348
>gi|345317522|ref|XP_001519338.2| PREDICTED: tRNA pseudouridine synthase 3-like [Ornithorhynchus
anatinus]
Length = 734
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 224/394 (56%), Gaps = 38/394 (9%)
Query: 19 LQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKV 78
L+ RV+ELE + ++++ DG ED +GG K
Sbjct: 15 LRQRVQELERE------------VQRLQRGRADGRED----------PAAGGAKK----- 47
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE 138
+++ + +R+VAL++ Y G + GFAS N T+E +F+AL KTRL + ++
Sbjct: 48 RQQRPFDFGAYGRRHVALRIAYLGWGYQGFASQENTNNTIEERLFEALTKTRL-IERRQT 106
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRV 198
++Y RCGRTDKGVS+ GQVI++ LRS G + + EI Y +LNRV
Sbjct: 107 ANYHRCGRTDKGVSAFGQVISLDLRSQT--VRGGQEEEGSKDRMDARTAEIRYTHILNRV 164
Query: 199 LPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCK 258
LP DIRV+ W+P + FSARF+C+ R Y+YFF R +L+L AM+ A +K+VG HDFRN CK
Sbjct: 165 LPPDIRVLAWAPVGSGFSARFNCLQRTYRYFFPRADLDLEAMDRAAQKYVGTHDFRNLCK 224
Query: 259 MDAAN-VHNYKRHVTSFEISPCYISFEGN-----QLCAIKIRGSAFLWHQVRCMVAVLFM 312
MD AN V +++R + S ++ S E + +LC ++ G AFL+HQVRCM+A+LF+
Sbjct: 225 MDVANGVTSFQRTILSAQVRRVDQSEETDRRDPFRLCQFEVTGQAFLYHQVRCMMAILFL 284
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHL 372
+GQ +E +VI+ LLD PRKPQY+MA E+PLVL C F+ L++ + HL
Sbjct: 285 VGQRMEGPEVIDELLDVEKNPRKPQYSMAVELPLVLYDCQFEKLEWIYDREVQEFNVRHL 344
Query: 373 RNECQVYQLQAAIFHEAL--LNCLPLANGLEIGS 404
+ + +Q + L L+ P+A G G+
Sbjct: 345 QQLWASHAVQTQLLFSMLQGLDSAPVAPGPGSGT 378
>gi|196007746|ref|XP_002113739.1| hypothetical protein TRIADDRAFT_26740 [Trichoplax adhaerens]
gi|190584143|gb|EDV24213.1| hypothetical protein TRIADDRAFT_26740, partial [Trichoplax
adhaerens]
Length = 279
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 134/293 (45%), Positives = 186/293 (63%), Gaps = 24/293 (8%)
Query: 89 HFKRY----VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC 144
HF RY VA K+ Y G +YG AS +E T+E+E+F AL KT L+ ++ S+YSR
Sbjct: 2 HFHRYNQRRVAFKLAYIGWDYYGLASQEGIEKTIEAELFNALTKT-CLIENRTNSNYSRS 60
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
GRTDKGVS++GQVI++ +R+N+ + G V E + E+ YV++LN+VLP DIR
Sbjct: 61 GRTDKGVSALGQVISLNVRTNL--------ASGPGVIVETV-SELSYVKLLNKVLPGDIR 111
Query: 205 VIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANV 264
++ W+P DFSARF+ +SR YKY+F R N+N+ AM A ++ GEHDFRNFCKMD ANV
Sbjct: 112 ILAWAPVDNDFSARFNTVSRTYKYYFPRANMNIEAMNEAAQRLKGEHDFRNFCKMDLANV 171
Query: 265 HNYKRHVTSFEI----SPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
N++R + S ++ +P + +G ++C I + G AFLWHQVRCMVA+LF+IGQGLE
Sbjct: 172 SNFRREILSIKVQSIETPYVLQNQGFEMCEIIVCGKAFLWHQVRCMVAILFLIGQGLEDA 231
Query: 321 DVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLR 373
++I +LD +KPQY MA + +S D H L HLR
Sbjct: 232 NIINYMLDIEKCNKKPQYGMASGMRTYARSL------LGLLSDDYHSLYFHLR 278
>gi|326429850|gb|EGD75420.1| hypothetical protein PTSG_06496 [Salpingoeca sp. ATCC 50818]
Length = 460
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 146/339 (43%), Positives = 206/339 (60%), Gaps = 17/339 (5%)
Query: 72 KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL 131
K+GKK K + + + KR +ALKV Y G++++G A + T+E+ +F+ALEK++L
Sbjct: 42 KSGKKS-KPQKPFDFSRYSKRKIALKVAYLGEKYHGLAIQISAPDTIEAHLFEALEKSKL 100
Query: 132 LVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECN---TNNASMGETVQEEQIEDE 188
V D K + YSRCGRTDKGVS+ QV+++ +RSN+ EC + + + + DE
Sbjct: 101 -VEDIKTADYSRCGRTDKGVSAYCQVVSLVVRSNLNECRGFISKPSVEPAKKKAKATVDE 159
Query: 189 IDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFV 248
+DY ++LN +LP +IRV+ W TDFSARFSC +R YKYFF R N++ +AM++A V
Sbjct: 160 LDYTKILNGLLPPEIRVVDWGAVDTDFSARFSCNARHYKYFFHRANMDTAAMQAACDHLV 219
Query: 249 GEHDFRNFCKMD-AANVHNYKRHVTSFEISPCYI------SFEGN-QLCAIKIRGSAFLW 300
GEHDFRNFCK D A V N+ R + + P I S +G+ L I G AFLW
Sbjct: 220 GEHDFRNFCKADVAGGVTNFVRTIKEARVCPAEIGDASVHSSDGDFDLWEFNIIGHAFLW 279
Query: 301 HQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTC 360
HQVRCM+AVLFM+G+G E ++ LL+ + KPQY MA E+PLVL C FDG+ ++
Sbjct: 280 HQVRCMMAVLFMVGRGDEQPGMVRHLLNIDECTHKPQYVMASELPLVLYDCKFDGIDWSG 339
Query: 361 SLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANG 399
+ D H R+H ++Q + ALL C A G
Sbjct: 340 N-DEQHAARIHTHWR-SLWQTNS--IRNALLRCFMTAFG 374
>gi|156369650|ref|XP_001628088.1| predicted protein [Nematostella vectensis]
gi|156215055|gb|EDO36025.1| predicted protein [Nematostella vectensis]
Length = 464
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 141/351 (40%), Positives = 205/351 (58%), Gaps = 28/351 (7%)
Query: 61 EENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVES 120
+E R+ + + + K K + + + R +AL++ Y G +GFAS ++ TVE+
Sbjct: 49 KETREFDPDCVQIKRAKSKPRKEFDFSRYNTRRIALRLSYLGWDMHGFASQEKIDNTVEA 108
Query: 121 EIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI---------KECNT 171
+F AL K LV ++ YSRCGRTDKGVS+ GQVI++ +R+N+ +E +
Sbjct: 109 HLFDALIKA-CLVKSRESCSYSRCGRTDKGVSAFGQVISLNVRTNLDKGPGVILRQESSV 167
Query: 172 NNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFW 231
+ G+T++E I YV +LN+VLPK+IRV+ W+P DF ARFSC R+YKY F
Sbjct: 168 GRDTKGKTMKE------ILYVDILNKVLPKEIRVLAWAPVELDFDARFSCSYRKYKYLFP 221
Query: 232 RENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISF------- 283
NL++ M A KK GEHDFRNFCKMD AN V + R++TSF++ +
Sbjct: 222 SANLDIDLMNLASKKLEGEHDFRNFCKMDVANGVIQFTRNITSFKVQKVSNATYSAPGEN 281
Query: 284 ----EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYN 339
G ++C I GSAFLWHQVRCM+++L M+GQGLE +VI+ LLD P++PQYN
Sbjct: 282 KAKQRGYEMCEAVICGSAFLWHQVRCMMSILLMVGQGLEQPEVIDWLLDIEKCPQRPQYN 341
Query: 340 MAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL 390
MA E+PLVL C ++G+ + + +L+ Y +A + E L
Sbjct: 342 MASELPLVLYDCVYEGITWIYDPQVLESVTKNLQQLWNTYATKATLAQELL 392
>gi|384248918|gb|EIE22401.1| tRNA pseudouridine synthase, partial [Coccomyxa subellipsoidea
C-169]
Length = 277
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 129/259 (49%), Positives = 176/259 (67%), Gaps = 22/259 (8%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD--KKESHYSRCGRTD 148
+RYVAL V Y G R++GFAS + E TVE +F+A+ KT+L+ + YSRCGRTD
Sbjct: 10 RRYVALGVFYVGWRYHGFASQADSEETVEGHLFRAMRKTKLIPEGLGWEGLGYSRCGRTD 69
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
KGVS++GQV+A++LRS K + ++G +++E+DY LNR LP DIRV+GW
Sbjct: 70 KGVSALGQVVALWLRSGAK---ADEPALG-------VDEEMDYAVTLNRALPDDIRVLGW 119
Query: 209 SPAPTDFSARFSCISREYKYFF-WRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNY 267
+P P FSAR S YF R +L+L+AM+ A FVG+HDFRNFCK+DA +V ++
Sbjct: 120 TPVPEGFSARCS------SYFIVQRGDLDLAAMQEAAGHFVGDHDFRNFCKVDAQHVSSF 173
Query: 268 KRHVTSFEISPCYISFEGN-QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
+R + F I P + +G Q+CA+ +RG+AFLWHQVRCM AVL ++G+GLES D++ L
Sbjct: 174 RRTILDFRIVP--VGLQGAAQVCALHVRGTAFLWHQVRCMAAVLLLVGRGLESPDIVRRL 231
Query: 327 LDTNGIPRKPQYNMAPEIP 345
LD P KPQYNMAPE+P
Sbjct: 232 LDVEVTPLKPQYNMAPEVP 250
>gi|431904392|gb|ELK09777.1| tRNA pseudouridine synthase 3 [Pteropus alecto]
Length = 481
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 139/339 (41%), Positives = 202/339 (59%), Gaps = 15/339 (4%)
Query: 27 EADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTL 86
E D ++ ++ L R +++E +V + N + S G K+
Sbjct: 3 ENDIDRIQTEKLLKRVQELEQEVQRLKNKQANTKDSNVRENSSGVGKAKRAFD------F 56
Query: 87 NHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
+ H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL + ++ S+Y RCGR
Sbjct: 57 SAHGRRHVALKIAYLGWGYQGFASQENTNNTIEEKLFEALTKTRL-IESRQTSNYHRCGR 115
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ GQVI++ LRS+ + ++ T + EI Y +LNRVLP DIRV+
Sbjct: 116 TDKGVSAFGQVISLDLRSHFPK-GRDSEDFNLTDEVNDAAKEIRYTHILNRVLPPDIRVL 174
Query: 207 GWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VH 265
W+ FSARFSC+ R Y+YFF R +L++ M A +K+VG HDFRN CKMD AN V
Sbjct: 175 AWASVEPSFSARFSCLERTYRYFFPRADLDIVTMNCAAQKYVGTHDFRNLCKMDVANGVI 234
Query: 266 NYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
N+ R + S ++ E Q+C ++ G AFL+HQVRCM+A+LF+IGQG+E
Sbjct: 235 NFHRTILSAQVQLVGQGLAEERWQEPFQICQFEVTGQAFLYHQVRCMMAILFLIGQGMEK 294
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
++I+ LL+ P+KPQY+MA E PLVL C F+ +K+
Sbjct: 295 PEIIDELLNVEKNPQKPQYSMAVEFPLVLYDCKFENIKW 333
>gi|384496190|gb|EIE86681.1| hypothetical protein RO3G_11392 [Rhizopus delemar RA 99-880]
Length = 450
Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 197/323 (60%), Gaps = 24/323 (7%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNME--PTVESEIFKALEKTRLLVADKKESHYSR 143
+ + KR +AL+V Y G + GFAS + E PT+E +FKAL++ +L+ Y+R
Sbjct: 53 MTKYTKRKIALRVAYIGWNYIGFASQQDPERIPTIEDMLFKALKECKLVAEIDDSIDYTR 112
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDI 203
CGRTD+GVS +GQVIA+++RS K+ ++ + + + EQ E YV LNR+LP DI
Sbjct: 113 CGRTDRGVSGLGQVIALWVRS--KKLTSDPSP--DLLPAEQ---EFPYVDTLNRMLPPDI 165
Query: 204 RVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA- 262
RV+ W+P P DFSAR+ C SR YKYFF R +++ M K F GEHDFRNFCKMD A
Sbjct: 166 RVLAWAPVPEDFSARYHCTSRTYKYFFSRGKMDIEKMRQGCKYFEGEHDFRNFCKMDPAK 225
Query: 263 NVHNYKRHVTSFEISP------CYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
N+ +Y RH+ S + P +I +G ++++G+AFLWHQVR M++VLF++GQG
Sbjct: 226 NIQSYDRHILSMTVRPVDHTQTAHIG-DGTDFYEVELKGTAFLWHQVRYMMSVLFLVGQG 284
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG------HDLRL 370
LE + I +LD +P KP + MA ++PLVL C+F +++ S A LR+
Sbjct: 285 LEPPETIRDVLDIEKVPSKPDFPMASDLPLVLYDCEFKDIEWFYSFKASTYDPFPSSLRI 344
Query: 371 HLR-NECQVYQLQAAIFHEALLN 392
+L NE Q+ ++ ++ L
Sbjct: 345 YLHYNELWNVQMIRSLTYQYYLT 367
>gi|153792349|ref|NP_001093370.1| pseudouridylate synthase 3 [Xenopus laevis]
gi|148745611|gb|AAI42593.1| LOC100101318 protein [Xenopus laevis]
Length = 507
Score = 257 bits (656), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 160/404 (39%), Positives = 221/404 (54%), Gaps = 52/404 (12%)
Query: 11 SLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGG 70
S ++++ L+ RVKELE K+L CR E + H
Sbjct: 2 SQENEVTQLRQRVKELEE---KVLHLEGQCRGEGDQGLRH-------------------- 38
Query: 71 CKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTR 130
K+K + + + + H KR+VAL++ Y G + GFAS N + TVE +F AL KTR
Sbjct: 39 -TNPKQKERPQRAFDFSAHPKRHVALRLAYLGWGYQGFASQENTKNTVEETVFNALLKTR 97
Query: 131 LLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID 190
L V ++ S+Y RCGRTD+GVS++ QVI++ LR C+ + EI
Sbjct: 98 L-VESRQTSNYHRCGRTDRGVSALAQVISLDLR-----CSAEG------------KPEIR 139
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
YV +LNRVLP DIRV+ W+P P FSARFSC SR Y+Y F L++ AM+ A + G
Sbjct: 140 YVHILNRVLPPDIRVLSWAPVPPSFSARFSCGSRTYRYLFPCAQLDVEAMDKAARLLEGT 199
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGN----QLCAIKIRGSAFLWHQVRC 305
HDFRN CKMD AN V N+ R V S + P G+ QL ++I G AFL+HQVRC
Sbjct: 200 HDFRNLCKMDVANGVLNFTRTVLSARVGPV-PEIPGDMGPFQLYHLQITGLAFLYHQVRC 258
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
++ VLF++GQG E +VI LLD PRKPQYNMA E PLVL +C FD +++ +A
Sbjct: 259 IMGVLFLVGQGKEKPEVITELLDVVKNPRKPQYNMAVEFPLVLYNCHFDDVQWVSEKEAQ 318
Query: 366 HDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGLEIGSSLI 407
HL+ ++ I A+ L+ +P++ LE G +
Sbjct: 319 SLTVAHLQRLWTQEAVKTQILFMAIGGLDSIPIS--LETGQDPV 360
>gi|241713555|ref|XP_002412103.1| pseudouridylate synthase, putative [Ixodes scapularis]
gi|215505180|gb|EEC14674.1| pseudouridylate synthase, putative [Ixodes scapularis]
Length = 398
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/277 (48%), Positives = 174/277 (62%), Gaps = 11/277 (3%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE-SHYSRCGRTDK 149
KR+VAL+ +Y G + G+ + TVE+ +F+AL++TRLL D +E S+Y RCGRTDK
Sbjct: 1 KRHVALRFLYLGWNYDGYVVQEDTANTVEAALFQALQRTRLL--DLRETSNYHRCGRTDK 58
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE---QIEDEIDYVRVLNRVLPKDIRVI 206
GVS+ QVI+I LRSN+ E A ++ E+DYV++LN VLP DIRV+
Sbjct: 59 GVSAFSQVISIDLRSNLTEGPEGTAPSARSIHSVISVARSTELDYVKILNGVLPPDIRVL 118
Query: 207 GWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VH 265
W+PA FSARF C +R Y+YF + NL + M A K VGEHDFRN CKMD N V
Sbjct: 119 AWAPAEPSFSARFDCQARTYRYFLPKGNLVVQRMREAAKLLVGEHDFRNLCKMDVGNGVT 178
Query: 266 NYKRHVTSFEISPCYISFEGN----QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESID 321
Y R + S E+ +G Q+ ++I G AFLWHQVRC+VA+L ++GQGLE +
Sbjct: 179 RYVRRILSTELYDGEPEGDGGSSGYQMLCLEIVGQAFLWHQVRCIVAILLLVGQGLEEPE 238
Query: 322 VIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
V+ LLD P KPQY MA EIPLVL C F+GL +
Sbjct: 239 VVSKLLDVEAHPCKPQYGMASEIPLVLYDCQFEGLDW 275
>gi|159487841|ref|XP_001701931.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
gi|158281150|gb|EDP06906.1| tRNA pseudouridine synthase [Chlamydomonas reinhardtii]
Length = 287
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/283 (44%), Positives = 179/283 (63%), Gaps = 17/283 (6%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL--VADKK--ESHY 141
+ RYVAL++MY G F GFA N E T+E +F AL KT+L+ A K E Y
Sbjct: 5 FGRYRTRYVALELMYVGWAFQGFARQDNTENTIEGVLFSALRKTKLIPEAAAKPISELAY 64
Query: 142 SRCGRTDKGVSSVGQVIAIYLRSNIKE----CNTNNASMGETVQEE-----QIEDEIDYV 192
SRCGRTD+GVS++GQV+A+ LRS + ++ SM +E E DY
Sbjct: 65 SRCGRTDRGVSALGQVVALQLRSCARPGGGGLGYHDPSMCGPARESLQCPSWCVQEFDYP 124
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
R++N+ LP ++R++GW+P P DF+AR C R ++ + + +L++ AM +A F+GEHD
Sbjct: 125 RLINKALPPEVRILGWTPVPADFNAR--CGGRAGEWVYQQHSLDIQAMRTAAAHFIGEHD 182
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFE--GNQLCAIKIRGSAFLWHQVRCMVAVL 310
FRNFCK D A V +++R + SF + P S +Q+ A+ +RG+AFLWHQVRCM A+L
Sbjct: 183 FRNFCKPDVATVRSFRRRILSFTVEPVTTSAADAAHQVYALTVRGTAFLWHQVRCMAAIL 242
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
M+G+G E+ DV+ LLD PRKPQY+MAPE PL+L +C F
Sbjct: 243 LMVGRGQEAPDVVARLLDVEACPRKPQYSMAPEEPLLLYACGF 285
>gi|89266772|emb|CAJ81267.1| pseudouridine synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 224/404 (55%), Gaps = 49/404 (12%)
Query: 11 SLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGG 70
S + ++ L+ RV+ELE K+L CR E GV G +
Sbjct: 2 SQEDEVTQLRQRVRELED---KVLRLEEQCRGEAPPQ----GVVQGPSHT---------- 44
Query: 71 CKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTR 130
K+K + + + + H K++VAL++ Y G + GFAS N + TVE +F AL KTR
Sbjct: 45 ----KQKQRLQRAFDFSAHPKQHVALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTR 100
Query: 131 LLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID 190
L V ++ S+Y RCGRTD+GVS++GQVI++ LR + GE + EI
Sbjct: 101 L-VESRQTSNYHRCGRTDRGVSALGQVISLDLRCS-----------GEG------KPEIR 142
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
YV +LNRVLP DIRV+ W+ P FSARFSC SR Y+Y F L++ AM+ A + G
Sbjct: 143 YVHILNRVLPPDIRVLSWAAVPPSFSARFSCRSRTYRYLFSCAQLDVEAMDKAARLLEGT 202
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGN----QLCAIKIRGSAFLWHQVRC 305
HDFRN CKMD AN V N+ R V S + P G+ QL ++I G AFL+HQVRC
Sbjct: 203 HDFRNLCKMDVANGVMNFIRTVLSARVEPV-PEIPGDMGPFQLYRLQITGLAFLYHQVRC 261
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
++ VLF++GQG E +VI LLD PRKPQYNMA E PLVL +C FD +++ +A
Sbjct: 262 IMGVLFLVGQGKEKPEVITELLDVAKNPRKPQYNMAVEFPLVLYNCHFDDVQWVSEKEAQ 321
Query: 366 HDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGLEIGSSLI 407
HL+ ++ I A+ L+ +P++ LE G L+
Sbjct: 322 SLTVSHLQRLWTQEAVKTQILFMAIGGLDSIPIS--LETGQDLV 363
>gi|45360593|ref|NP_988969.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
gi|38174435|gb|AAH61416.1| pseudouridylate synthase 3 [Xenopus (Silurana) tropicalis]
Length = 505
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 224/404 (55%), Gaps = 49/404 (12%)
Query: 11 SLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGG 70
S + ++ L+ RV+ELE K+L CR E GV G +
Sbjct: 2 SQEDEVTQLRQRVRELED---KVLRLEEQCRGEAPPQ----GVVQGPSHT---------- 44
Query: 71 CKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTR 130
K+K + + + + H K++VAL++ Y G + GFAS N + TVE +F AL KTR
Sbjct: 45 ----KQKQRLQRAFDFSAHPKQHVALRLAYLGWGYQGFASQENTKNTVEETVFNALIKTR 100
Query: 131 LLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID 190
L V ++ S+Y RCGRTD+GVS++GQVI++ LR + GE + EI
Sbjct: 101 L-VESRQTSNYHRCGRTDRGVSALGQVISLDLRCS-----------GEG------KPEIR 142
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
YV +LNRVLP DIRV+ W+ P FSARFSC SR Y+Y F L++ AM+ A + G
Sbjct: 143 YVHILNRVLPPDIRVLSWAAVPPSFSARFSCRSRTYRYLFPCAQLDVEAMDKAARLLEGT 202
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGN----QLCAIKIRGSAFLWHQVRC 305
HDFRN CKMD AN V N+ R V S + P G+ QL ++I G AFL+HQVRC
Sbjct: 203 HDFRNLCKMDVANGVMNFIRTVLSARVEPV-PEIPGDMGPFQLYRLQITGLAFLYHQVRC 261
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
++ VLF++GQG E +VI LLD PRKPQYNMA E PLVL +C FD +++ +A
Sbjct: 262 IMGVLFLVGQGKEKPEVITELLDVAKNPRKPQYNMAVEFPLVLYNCHFDDVQWVSEKEAQ 321
Query: 366 HDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGLEIGSSLI 407
HL+ ++ I A+ L+ +P++ LE G L+
Sbjct: 322 SLTVSHLQRLWTQEAVKTQILFMAIGGLDYIPIS--LETGQDLV 363
>gi|317419455|emb|CBN81492.1| tRNA pseudouridine synthase 3 [Dicentrarchus labrax]
Length = 472
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/279 (46%), Positives = 183/279 (65%), Gaps = 11/279 (3%)
Query: 89 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
H +R+VAL++ Y G + GFA N + TVE+ +F+AL KTRL + D++ S+Y RCGRTD
Sbjct: 68 HPRRHVALRLAYLGWSYQGFAVQENTDNTVEARLFEALLKTRL-IQDRQSSNYHRCGRTD 126
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETV----QEEQIEDEIDYVRVLNRVLPKDIR 204
KGVS+ QVI I LRS + C ++ E V + + E+ YV++LNRVLP+DIR
Sbjct: 127 KGVSAFSQVITIDLRST-QFCGGLGVTLPENVDVRSKNKASGSELPYVKMLNRVLPQDIR 185
Query: 205 VIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN- 263
++ W+PA FSARF C SR Y+Y+F R +L+++ M A K++ G HDFRN CKMD N
Sbjct: 186 ILDWAPAAEGFSARFDCQSRTYRYYFPRGSLDVALMAEAAKRYEGTHDFRNLCKMDVGNG 245
Query: 264 VHNYKRHVTSFEISPCYI----SFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
V ++R + S + P S + +L +I+G AFL+HQVRCM+A+L +IGQ LE+
Sbjct: 246 VLQFERTILSASVKPVQPQHVSSTDQYELFMFEIKGLAFLYHQVRCMMALLLLIGQKLEA 305
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
++I L+D PRKPQY+MA + PLVL C F+GL +
Sbjct: 306 PEIINQLMDVQSNPRKPQYSMAVDYPLVLYDCHFEGLSW 344
>gi|427798085|gb|JAA64494.1| Putative pseudouridylate synthase, partial [Rhipicephalus
pulchellus]
Length = 439
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/324 (43%), Positives = 185/324 (57%), Gaps = 29/324 (8%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+R+VAL+++Y G + G+ + TVE+ +F+ALE+TRLL D+ ++HY RCGRTDKG
Sbjct: 70 RRHVALRLLYLGWDYSGYVLQEDTGRTVEAALFEALERTRLL-EDRTDAHYHRCGRTDKG 128
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMG--ETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
VS+ QVI+I LR+N+ E A G E +E+DYV++LN VLP +IRV+ W
Sbjct: 129 VSAFSQVISIDLRTNLSEGVGVFAQEGYQPNSSEASRTEELDYVKILNGVLPPEIRVLAW 188
Query: 209 SPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNY 267
+P FSARF C R Y+YFF R +L++ M VGEHDFRN CKMD AN V NY
Sbjct: 189 APVDQAFSARFDCRQRTYRYFFPRGSLDVERMCEGAALLVGEHDFRNLCKMDVANGVTNY 248
Query: 268 KRHVTSFEI-------SPCYISFEGN------------------QLCAIKIRGSAFLWHQ 302
R + I SP S G L ++I G AFLWHQ
Sbjct: 249 MRRILRTSIFRWPPSKSPLVASPAGEDSSHTATFHKDGFTEDSYDLLCLEIVGQAFLWHQ 308
Query: 303 VRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSL 362
VRC+VAVL +IGQ LE VI LLD PRKPQY MA E+PLVL C F+GL++ S
Sbjct: 309 VRCIVAVLLLIGQRLEEPQVISELLDVAKNPRKPQYAMAAELPLVLYDCQFEGLEWQQSS 368
Query: 363 DAGHDLRLHLRNECQVYQLQAAIF 386
+ HL+ +++ +F
Sbjct: 369 AEAEAVATHLQALWTQARIKXRVF 392
>gi|255088059|ref|XP_002505952.1| predicted protein [Micromonas sp. RCC299]
gi|226521223|gb|ACO67210.1| predicted protein [Micromonas sp. RCC299]
Length = 290
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 134/278 (48%), Positives = 177/278 (63%), Gaps = 11/278 (3%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADK--KESHYSRCGR 146
R+VAL VMY G + GFAS G TVE +F+AL++ RL+ D K Y+RCGR
Sbjct: 13 RHVALHVMYAGWDYRGFASQGAERDGVRTVEEALFRALKRVRLIAPDATWKTCDYTRCGR 72
Query: 147 TDKGVSSVGQVIAIYLRSNI--KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
TD GVS++GQV++ LR + ++ + ++ + ET + + DEIDY VLNR LP+DIR
Sbjct: 73 TDAGVSALGQVVSARLRCRVPRRDDDDDDDDLSETGRLHE-GDEIDYPAVLNRALPRDIR 131
Query: 205 VIGWSPAPTDFSARFSCISREYKYFFWREN-LNLSAMESAGKKFVGEHDFRNFCKMDAAN 263
++GW+ P FSARF C R YKYFF N L++ AM A FVGEHDFRNFCKMDA N
Sbjct: 132 ILGWTYVPPAFSARFDCDYRHYKYFFTDWNGLDVRAMNEAASAFVGEHDFRNFCKMDARN 191
Query: 264 VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVI 323
VHNY+R + S + + E + I++ G+AFLWHQVRC+ +VLF++G G E V+
Sbjct: 192 VHNYRRRIDSCRV--VLAAGEPPGVAHIEVVGTAFLWHQVRCIASVLFLVGLGREPPGVV 249
Query: 324 ESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCS 361
+LD PRKPQY MAPE PL+L C F + F S
Sbjct: 250 AHMLDLARCPRKPQYEMAPEEPLLLWRCGFRDVSFRLS 287
>gi|330804770|ref|XP_003290364.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum]
gi|325079531|gb|EGC33127.1| hypothetical protein DICPUDRAFT_154861 [Dictyostelium purpureum]
Length = 449
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 191/311 (61%), Gaps = 27/311 (8%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD 135
KK +K + + +RYVA KV Y G ++GFA+ + T+E + KAL++T L ++D
Sbjct: 52 KKKDKKPNVNFDKCHRRYVAFKVSYVGWPYHGFAAQDCTDETIEGHLIKALKRTSL-ISD 110
Query: 136 KKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGET---------------- 179
K S+Y++ GRTDKGVS+ GQVI++Y+RSN+ E A + ++
Sbjct: 111 IKTSNYAKSGRTDKGVSAFGQVISLYVRSNLTEGEGIIAPLDQSGGPISNRPSKNNNNNS 170
Query: 180 -----VQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN 234
Q+ + ++E YV++LN VLP +IRV+GW+P P F++RFS + R YKYFF N
Sbjct: 171 NSNNQKQQNKAKEEFPYVKMLNGVLPPEIRVLGWAPIPFHFNSRFSTLFRTYKYFFTLNN 230
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIR 294
++L+ M+ AG ++GEHDF NFCKMD NV ++KR + F I P N L I+
Sbjct: 231 MDLNLMKEAGNHYLGEHDFSNFCKMDIENVKSFKRVILEFSIEPVN---NHNDLYVATIK 287
Query: 295 GSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT-NGIPRKPQYNMAPEIPLVLQSCDF 353
G AFLWHQ+RCM+A+LF+IGQ + +I LLDT NGI KP Y MA EIPLVL C +
Sbjct: 288 GYAFLWHQIRCMMAMLFLIGQKKFPVSIIPELLDTSNGI-TKPPYEMASEIPLVLFDCGY 346
Query: 354 DGLKFTCSLDA 364
+ L+F DA
Sbjct: 347 EDLEFIIDNDA 357
>gi|321464475|gb|EFX75483.1| hypothetical protein DAPPUDRAFT_323292 [Daphnia pulex]
Length = 429
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 131/272 (48%), Positives = 171/272 (62%), Gaps = 18/272 (6%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
KR+V L+V Y G + GF + E T+E+E+FKALEKTRLL ++ S+Y RCGRTDKG
Sbjct: 66 KRHVLLQVAYVGWDYAGFVVQEHTEKTIEAEVFKALEKTRLL-ESRETSNYHRCGRTDKG 124
Query: 151 VSSVGQVIAIYLRSNIKE------CNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
VSS GQ I+I LRSN+ E + + A +G TV EIDYV +LN+VLP +IR
Sbjct: 125 VSSFGQAISIDLRSNLSEGKGVFIPDGHQAKVGNTV-------EIDYVGILNKVLPPEIR 177
Query: 205 VIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN- 263
+I W+P SARF C R Y Y+F + NLN+ M A + +GEHDFRN CKMD N
Sbjct: 178 MIAWAPINQSLSARFDCRQRTYHYYFPKANLNIERMRVASQSLIGEHDFRNLCKMDVGNG 237
Query: 264 VHNYKRHVTSFEISPCYISFEGNQLCAIKIR--GSAFLWHQVRCMVAVLFMIGQGLESID 321
V + R + +I + N I+++ G AFLWHQVRC+VA+LF+IGQG E
Sbjct: 238 VIKFDRRIMDIQIE-AIDDDKANSYSMIRLKLIGQAFLWHQVRCIVAILFLIGQGKEETT 296
Query: 322 VIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+I+ LL+ PRKPQY MA EIPL L +C +
Sbjct: 297 IIQELLNVERNPRKPQYGMASEIPLNLFTCTY 328
>gi|12847644|dbj|BAB27651.1| unnamed protein product [Mus musculus]
Length = 316
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 143/335 (42%), Positives = 202/335 (60%), Gaps = 35/335 (10%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q+E L NRVKELE + +L K + + + ++D + + EN
Sbjct: 7 RNQIEKLLNRVKELEQEVERL----------KKKKEQANNIKDSS--IREN------SLG 48
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
+GK K S H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 49 SGKAKRAFDFSA----HGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL- 103
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEID 190
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS T+ S ++ E + EI
Sbjct: 104 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP---TSRDSEDSNLKHEADDLAKEIR 160
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
Y +LNRVLP DIRV+ W+P FSARFSC+ R Y+YFF R +L+++ M A +K+VG
Sbjct: 161 YTHILNRVLPADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGT 220
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQV 303
HDFRN CKMD AN V N++R + ++ S E QLC ++ G AFL+HQV
Sbjct: 221 HDFRNLCKMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQV 280
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQY 338
RCM+A+LF+IGQG+E ++I+ LL+ P+KPQY
Sbjct: 281 RCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQY 315
>gi|148693449|gb|EDL25396.1| pseudouridine synthase 3, isoform CRA_b [Mus musculus]
Length = 322
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 143/335 (42%), Positives = 202/335 (60%), Gaps = 35/335 (10%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q+E L NRVKELE + +L K + + + ++D + + EN
Sbjct: 13 RNQIEKLLNRVKELEQEVERL----------KKKKEQANNIKDSS--IREN------SLG 54
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
+GK K S H +R+VALK+ Y G + GFAS N T+E ++F+AL KTRL
Sbjct: 55 SGKAKRAFDFSA----HGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTRL- 109
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEID 190
V ++ S+Y RCGRTDKGVS+ GQVI++ LRS T+ S ++ E + EI
Sbjct: 110 VESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP---TSRDSEDSNLKHEADDLAKEIR 166
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
Y +LNRVLP DIRV+ W+P FSARFSC+ R Y+YFF R +L+++ M A +K+VG
Sbjct: 167 YTHILNRVLPADIRVLAWAPVEPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGT 226
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQV 303
HDFRN CKMD AN V N++R + ++ S E QLC ++ G AFL+HQV
Sbjct: 227 HDFRNLCKMDVANGVINFQRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQV 286
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQY 338
RCM+A+LF+IGQG+E ++I+ LL+ P+KPQY
Sbjct: 287 RCMMAILFLIGQGMEKPEIIDELLNIQKNPQKPQY 321
>gi|340724310|ref|XP_003400525.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus terrestris]
Length = 424
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 198/354 (55%), Gaps = 48/354 (13%)
Query: 26 LEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGT 85
LE + +LLSK L +E L EEN + K + K+KEK
Sbjct: 13 LEKEELQLLSKTEL-------------IEKIIKLEEENEQL-----KAARHKIKEKSKNK 54
Query: 86 LNHHF----------KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD 135
H KR++ LK Y G + GF + + T+E +F+AL K+ +
Sbjct: 55 DIHKLQKPFDFSKCNKRHILLKFYYLGWNYNGFVVQESTDNTIEEHLFEALIKS-CCIES 113
Query: 136 KKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ--IEDEIDYVR 193
++ S+Y RCGRTDKGVSS QVI+I LRS + E+Q +EDE+ Y +
Sbjct: 114 RETSNYHRCGRTDKGVSSFSQVISIDLRSKLNP-------------EDQCKLEDELPYCK 160
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
+LNR+LP +IR I W PA ++FSARF+C R YKYFF R NLN+ +M+ A K +GEHDF
Sbjct: 161 ILNRLLPSNIRCIAWCPASSNFSARFNCKFRTYKYFFPRGNLNIDSMDKAVKYTIGEHDF 220
Query: 254 RNFCKMDAAN-VHNYKRHVTSFEISPCYISFE---GNQLCAIKIRGSAFLWHQVRCMVAV 309
RN CKMD AN V NY+R V ++ F G +C + I AFLWHQ+RC++ V
Sbjct: 221 RNICKMDVANGVTNYQRKVIDAKVCLYRRDFRNISGYDVCQLIITSQAFLWHQIRCLMGV 280
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
LF+IGQG E ++I LLD PRKPQYN+A EIPL L C++D +++ D
Sbjct: 281 LFLIGQGNEKPEIILELLDIEKYPRKPQYNLAHEIPLNLWYCEYDTMEWYIDKD 334
>gi|350420811|ref|XP_003492633.1| PREDICTED: tRNA pseudouridine synthase 3-like [Bombus impatiens]
Length = 424
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/349 (41%), Positives = 198/349 (56%), Gaps = 48/349 (13%)
Query: 26 LEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGT 85
LE + +LLSK L +E L EEN++ K K K+KEK
Sbjct: 13 LEKEELQLLSKAEL-------------IEKIIKLEEENKQL-----KAAKNKIKEKSKNK 54
Query: 86 LNHHF----------KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD 135
H KR++ LK Y G + G+ + + T+E +F+AL K+ +
Sbjct: 55 DIHKSQKPFDFSKCNKRHILLKFYYLGWNYNGYVVQESTDNTIEEHLFEALIKS-CCIES 113
Query: 136 KKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ--IEDEIDYVR 193
++ S+Y RCGRTDKGVSS QVI+I LRS + E+Q +EDE+ Y +
Sbjct: 114 RETSNYHRCGRTDKGVSSFSQVISIDLRSKLNP-------------EDQCKLEDELPYCK 160
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
+LNR+LP +IR I W PA ++FSARF+C R YKYFF R NLN+ +M+ A K +GEHDF
Sbjct: 161 ILNRLLPSNIRCIAWCPASSNFSARFNCKFRTYKYFFPRGNLNIDSMDKAVKYTIGEHDF 220
Query: 254 RNFCKMDAAN-VHNYKRHVTSFEISPCYISFE---GNQLCAIKIRGSAFLWHQVRCMVAV 309
RN CKMD AN V NY+R V ++ F G +C + I AFLWHQ+RC++ V
Sbjct: 221 RNICKMDVANGVTNYQRKVIDAKVCLYRRDFRNISGYDVCQLIITSQAFLWHQIRCLMGV 280
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
LF+IGQG E ++I LLD PRKPQYN+A EIPL L C++D +++
Sbjct: 281 LFLIGQGNEKPEIILELLDIEKCPRKPQYNLAHEIPLNLWYCEYDTMEW 329
>gi|351703596|gb|EHB06515.1| tRNA pseudouridine synthase 3 [Heterocephalus glaber]
Length = 448
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/310 (43%), Positives = 189/310 (60%), Gaps = 24/310 (7%)
Query: 89 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
H +R+VAL++ Y G + GFAS N + T+E ++F AL KTRL V ++ S+Y RCGRTD
Sbjct: 28 HSQRHVALRIAYLGWAYQGFASQENTDNTIEEKLFVALTKTRL-VESRQTSNYHRCGRTD 86
Query: 149 KGVSSVGQVIAIYLRSNIKEC-NTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
KGVS+ GQVI++ LRS ++ + ++ + V ++ E Y +L+RVLP DIRV+
Sbjct: 87 KGVSAFGQVISLDLRSQFPRGKDSKDLNLKDEVSDD--AKEARYTHILSRVLPPDIRVLA 144
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHN 266
W+P FSARFSC+ Y YFF +LN M A +K+VG H FRN CKMD AN V N
Sbjct: 145 WAPVECSFSARFSCLEHTYHYFFPCADLNSVRMNYAAQKYVGTHVFRNLCKMDVANGVIN 204
Query: 267 YKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
++R + S ++ S E QLC +++ G AFL+HQVRCM+A+LF+IGQG+E
Sbjct: 205 FQRTILSAQVQLVGQSLGEERWQEPFQLCQLEVTGQAFLYHQVRCMMAILFLIGQGMEKP 264
Query: 321 DVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTC-------------SLDAGHD 367
+VI+ LL P+KPQY+MA E PLVL C F+ +K+ L A H
Sbjct: 265 EVIDELLKIEKNPQKPQYSMAVEFPLVLYDCKFENIKWIYDQVVQEFNVTHLQQLWANHA 324
Query: 368 LRLHLRNECQ 377
++ H+ N Q
Sbjct: 325 VKSHMYNMLQ 334
>gi|449273859|gb|EMC83213.1| tRNA pseudouridine synthase 3, partial [Columba livia]
Length = 373
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/338 (41%), Positives = 198/338 (58%), Gaps = 22/338 (6%)
Query: 67 ESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKAL 126
E T K + K H +R+ ALKV Y G + GF+S N TVE ++F AL
Sbjct: 28 EKPQTPTKKPRNGPKRPFDFGAHGRRHAALKVAYLGWGYQGFSSQENTRNTVEEQLFHAL 87
Query: 127 EKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE 186
+ TRL V D++ + Y RCGRTDKGVS+ GQVI++ LRSN+K+ + + +
Sbjct: 88 QTTRL-VPDRQSARYQRCGRTDKGVSAFGQVISLDLRSNLKQPSGDETA----------- 135
Query: 187 DEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKK 246
E+ Y +LNRVLP DIRV+ W+P +FSARFS R + R L+++ M A ++
Sbjct: 136 GELRYPHMLNRVLPPDIRVLAWAPVGPEFSARFSFFYRYFFP---RGPLDVALMHRAAQR 192
Query: 247 FVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGNQ----LCAIKIRGSAFLWH 301
+VG HDFRNFCKMD AN V N++R V ++P + + + L ++ G AFL+H
Sbjct: 193 YVGTHDFRNFCKMDVANGVTNFQRTVLGAAVTPADAAQKSPENPFGLWCFEVTGQAFLYH 252
Query: 302 QVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCS 361
QVRCMVAVLF+IGQG+E ++I+ LLD PRKPQY+MA E PLVL C F+ L++
Sbjct: 253 QVRCMVAVLFLIGQGMERPEIIDELLDVEKNPRKPQYSMAVEFPLVLHDCQFENLRWIYD 312
Query: 362 LDAGHDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLA 397
D HL+ + ++ I H+ L L+ P+A
Sbjct: 313 QDVHEFTVSHLQQLWAAHAVKTHILHDMLHGLDAAPVA 350
>gi|449664207|ref|XP_002153998.2| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Hydra
magnipapillata]
Length = 426
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 196/321 (61%), Gaps = 19/321 (5%)
Query: 76 KKVKEKMSGTLNHHFKRY----VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL 131
K +K+K HF+ Y +ALK +Y G + G A+ T+E IF A+ K +
Sbjct: 59 KNIKKKEHKQRPFHFESYRSHRIALKFLYLGWDYQGLANQETTNNTIEDAIFNAMIKAK- 117
Query: 132 LVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDY 191
L+ D+ YSRCGRTDKGVS+ GQVIA+ +RSN +EE +EI Y
Sbjct: 118 LIEDRVLCKYSRCGRTDKGVSAFGQVIALNVRSNTL-----------VSEEEDTREEISY 166
Query: 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251
VR+LN++LP +IR++ ++ P DF ARF C +R YKYFF + +++ M++A +KFVGE
Sbjct: 167 VRLLNKILPPEIRMLAFARVPQDFDARFDCDTRMYKYFFPAKRMDIKLMDAAAQKFVGEK 226
Query: 252 DFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
DFRNFCK+D NV+++ R++ SF++ + + +C ++I G AFLWHQVRCMVAVL
Sbjct: 227 DFRNFCKVDVGNNVNHFIRNIVSFKVQMLN-NVDLVDICEMEITGLAFLWHQVRCMVAVL 285
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG-LKFTCSLDAGHDLR 369
+IG G+E ++I+ LLD P++PQY +A EIPLVL C +D + + +++
Sbjct: 286 LLIGLGVEKPEIIDHLLDVESCPKRPQYELASEIPLVLYDCTYDDKINWCYDIESNTQNV 345
Query: 370 LHLRNECQVYQLQAAIFHEAL 390
L+ + ++ +Q+AI L
Sbjct: 346 NILQKKFTIFTVQSAIIASML 366
>gi|380027544|ref|XP_003697482.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Apis florea]
Length = 400
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/334 (41%), Positives = 193/334 (57%), Gaps = 23/334 (6%)
Query: 26 LEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGT 85
L+ + +LLSK L IE V+ E+ N K E K +K ++ +
Sbjct: 13 LQKEELQLLSKSEL-----IERIVNLEKENKQLKTVTNEKNEKSKNKNIIRKSQKPFDFS 67
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCG 145
+ KR++ LK Y G + GF ++ T+E +F+AL K+ + ++ S+Y RCG
Sbjct: 68 KCN--KRHILLKFYYLGWNYNGFVVQESINNTIEEHLFEALIKS-CCIESRETSNYHRCG 124
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTDKGVSS QVI++ +RS + + ++EDE+ Y ++LNR+LP +IR
Sbjct: 125 RTDKGVSSFSQVISLDIRSKLN-----------PEDQYKLEDELPYCKMLNRLLPSNIRC 173
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-V 264
I W P P DFSARF+C R YKYFF R NLN+ AM+ A K +GEHDFRN CKMD AN V
Sbjct: 174 IAWCPVPNDFSARFNCKFRTYKYFFPRGNLNIDAMDKAVKYIIGEHDFRNICKMDVANGV 233
Query: 265 HNYKRHVTSFEISPCYISFE---GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESID 321
NY R V + E+ F G +C + I AFLWHQ+RC++ VLF+IG+G E +
Sbjct: 234 TNYIRKVINAEVCMYRQDFRNISGYDMCQLIITSQAFLWHQIRCLMGVLFLIGEGKEEAE 293
Query: 322 VIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355
++ LLD P+KPQYN+A EIPL L C++D
Sbjct: 294 IMLKLLDIENCPKKPQYNLAHEIPLNLWYCEYDA 327
>gi|328873128|gb|EGG21495.1| tRNA pseudouridylate synthase [Dictyostelium fasciculatum]
Length = 510
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 186/320 (58%), Gaps = 34/320 (10%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+R+VALKV Y G ++GFA+ E T+E +F AL+KT L+ D KE +Y++ GRTDKG
Sbjct: 90 RRFVALKVAYLGWHYHGFAAQQCTEETIEGHLFSALQKT-CLIRDIKECNYTKSGRTDKG 148
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED----------------------- 187
VS+ GQVI++Y+RSN+K+ G+ + I D
Sbjct: 149 VSAFGQVISLYVRSNLKQ--------GDGIIPPVIPDDDNKNQQQKNKNNNKKNNNHVTP 200
Query: 188 -EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKK 246
E YVR+LN VLP IRV+ W+P P F+ARFS + R YKY+F L++ AM+ AG
Sbjct: 201 IEYPYVRMLNGVLPPYIRVLAWTPVPFHFNARFSTLYRTYKYYFNPAGLDIEAMKEAGNH 260
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYIS-FEGNQLCAIKIRGSAFLWHQVRC 305
F+G HDF NFCK+D V ++ R + SF+I+P + F+ L I G AFLWHQ+RC
Sbjct: 261 FLGSHDFSNFCKIDLEAVKSFTRVILSFDIAPVPVGQFQSGGLYEATICGYAFLWHQIRC 320
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
M+A+L +IGQ +I+ LLDT+ KP Y MA EIPLVL C ++ L+F D+
Sbjct: 321 MMAMLLLIGQKKFPTTIIKDLLDTSSAIAKPSYEMASEIPLVLYDCGYEDLEFIYENDSH 380
Query: 366 HDLRLHLRNECQVYQLQAAI 385
L + N + ++AA+
Sbjct: 381 QKLISSMFNVWNDHYIKAAV 400
>gi|443732826|gb|ELU17390.1| hypothetical protein CAPTEDRAFT_127384, partial [Capitella teleta]
Length = 372
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 182/314 (57%), Gaps = 22/314 (7%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
KR+VA K Y G F GFA T+E+ +F A KT+L + + S Y RCGRTDKG
Sbjct: 3 KRHVAFKFTYLGWDFNGFADQETSSKTIEAAVFDAFVKTKL-IESRDTSKYQRCGRTDKG 61
Query: 151 VSSVGQVIAIYLRSNIKE-----CNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
VS+ QVI++ +R+N+ E +NAS G+ E+ + ++LN LP +IRV
Sbjct: 62 VSAFTQVISLEVRTNLLEGPGVRVPEDNASRGK---------EMPFSKMLNGCLPPEIRV 112
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-V 264
I W P DFSARFSC SR YKYFF R LNL M +A K +G HDFRNFCKMD N V
Sbjct: 113 IAWCPVDEDFSARFSCQSRTYKYFFPRAQLNLDVMRAAAAKLIGLHDFRNFCKMDVRNGV 172
Query: 265 HNYKRHVTSFEISPCYISF----EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
Y R ++ I P + +G +C + + G +FLWHQVRC+ A+L +IG+G E+
Sbjct: 173 IEYMRRISEIHIEPFNSEYAAEDDGYSMCVMTVHGKSFLWHQVRCIAAILLIIGEGKETP 232
Query: 321 DVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQ 380
++I+ LL+ P++PQY MA EIPLVL +F+G ++ DA DL + + Q++
Sbjct: 233 ELIDDLLNVEKHPQRPQYMMASEIPLVLFGAEFEGTEWV--YDAAEDLESTVHHFQQMWA 290
Query: 381 LQAAIFHEALLNCL 394
A LL L
Sbjct: 291 SHAVKLVSGLLWIL 304
>gi|193666867|ref|XP_001946781.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 1
[Acyrthosiphon pisum]
gi|328702018|ref|XP_003241780.1| PREDICTED: tRNA pseudouridine synthase 3-like isoform 2
[Acyrthosiphon pisum]
Length = 402
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/343 (39%), Positives = 197/343 (57%), Gaps = 36/343 (10%)
Query: 59 LVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTV 118
L E+NRK K G+K K K + + KR+V K++Y G ++GFA+ E T+
Sbjct: 30 LKEQNRK------KLGRKITKPKRTIDFTKYHKRHVVFKILYLGWDYHGFATQDVSEKTI 83
Query: 119 ESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGE 178
E E+F+AL L+ ++ S+Y RCGRTDKGVSS QVI++ +RSN +
Sbjct: 84 EYELFRALTIC-CLIESRQTSNYHRCGRTDKGVSSFSQVISLTVRSNGDD---------- 132
Query: 179 TVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLS 238
+E+ Y ++LNR+LPKDIRV+ W P DFSARF C SR YKY+F R +L++
Sbjct: 133 -------SEELPYCKMLNRLLPKDIRVVAWGPVKDDFSARFDCGSRTYKYWFPRGDLDVD 185
Query: 239 AMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGNQ--------LC 289
M A ++ VG HDFRN CKMD AN V + R +TS +I C E NQ +C
Sbjct: 186 LMNQAIQQVVGTHDFRNLCKMDVANGVVQFYRRITSADIKICS---ENNQFSKNRDYDMC 242
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
+ I G AFLWHQ+RC+V+VL ++G E+ ++ + LL+ PRKPQY +A ++PL L
Sbjct: 243 ELTIVGKAFLWHQIRCIVSVLILVGCRKENPNIFKDLLNIENCPRKPQYCLASDLPLNLF 302
Query: 350 SCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLN 392
C F+ + + ++ ++ L+ + ++A + E L N
Sbjct: 303 DCQFENVNWVIEDESISEVITSLQCSWATHMIKATMLGEMLKN 345
>gi|308807767|ref|XP_003081194.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
gi|116059656|emb|CAL55363.1| Exopolyphosphatases and related proteins (ISS) [Ostreococcus tauri]
Length = 813
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 185/329 (56%), Gaps = 32/329 (9%)
Query: 72 KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDG--NMEPTVESEIFKALEKT 129
K + K + + R +ALKV Y G + GFAS G PTVE +F+AL KT
Sbjct: 434 KVRRAKTSDARAFDFAARPSRAIALKVAYLGWPYRGFASQGPEATTPTVEWTLFEALAKT 493
Query: 130 RLLVADK---KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE 186
RL+ A K + Y+RCGRTD+GVS +GQ++ + +RSN G + E
Sbjct: 494 RLVAAAADVFKTASYARCGRTDRGVSGLGQIVTLQVRSN-----------GASDPRE--- 539
Query: 187 DEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN-LNLSAMESAGK 245
E+DYV +LNR LP D+R +GW+P + +ARF C R+YKYFF + L+L AM A +
Sbjct: 540 -ELDYVGLLNRALPSDVRALGWAPVDEELNARFDCKWRQYKYFFEKTTALDLEAMGEAAR 598
Query: 246 KFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGN-QLCAIKIRGSAFLWHQVR 304
F G HDFRNFC+MDA NV ++ R V C I G+ +L I +RG+AFLWHQVR
Sbjct: 599 AFEGVHDFRNFCRMDAENVKSFTRRVLE-----CTIEEAGDGKLMYINVRGTAFLWHQVR 653
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTC---- 360
M +VLFM+G G E V+E LLD PRKPQY MAPE L+L +D +
Sbjct: 654 NMASVLFMVGLGHEPPSVVERLLDLERTPRKPQYPMAPEESLLLWRSGYDESRLDVERMH 713
Query: 361 -SLDAGHDLRLHLRNECQVYQLQAAIFHE 388
S A L H+ ++ +++AAI E
Sbjct: 714 ISDGALSQLEAHVASQMHSQRVRAAIHEE 742
>gi|281200681|gb|EFA74899.1| tRNA pseudouridylate synthase [Polysphondylium pallidum PN500]
Length = 1052
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/291 (44%), Positives = 178/291 (61%), Gaps = 20/291 (6%)
Query: 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSR---CGR 146
+KRY+ALKV Y G ++GFA+ E T+E + +AL+KT L+ D K +YS+ GR
Sbjct: 765 YKRYIALKVAYLGWDYHGFAAQQITEETIEGHLIRALQKT-CLINDIKNCNYSKYALSGR 823
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQI-------------EDEIDYVR 193
TDKGVS+ GQVI++Y+RSN+ E N+ + +E I +E +V+
Sbjct: 824 TDKGVSAFGQVISLYVRSNLTE--GNDLIPPTVIDDEAIAKKKANLLKNKKTHEEFQFVK 881
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
+LN VLP IRV+GWSP P F+ARFS + R YKYFF NL+L+ M+ AGK ++GEHDF
Sbjct: 882 MLNGVLPPYIRVLGWSPIPFHFNARFSTLYRTYKYFFDPSNLDLNLMKEAGKSYIGEHDF 941
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYI-SFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
NFCK+D +V ++ R + SF+I P F + + I G AFLWHQ+RCM+A+LF+
Sbjct: 942 SNFCKIDLESVKSFTRVILSFDIQPVESGDFSTSGMYVATICGYAFLWHQIRCMMAMLFL 1001
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
IGQ +I LLD + KP Y MA E+PLVL C ++ L F D
Sbjct: 1002 IGQKKFPTTIIADLLDLSKGIVKPPYEMASEVPLVLFDCGYEDLNFIYDKD 1052
>gi|328777716|ref|XP_393954.4| PREDICTED: tRNA pseudouridine synthase 3-like [Apis mellifera]
Length = 400
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 122/269 (45%), Positives = 167/269 (62%), Gaps = 16/269 (5%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
KR++ LK Y G + GF +++ T+E +F+AL K+ + ++ S+Y RCGRTDKG
Sbjct: 54 KRHILLKFYYLGWDYNGFVVQESIDNTIEEHLFEALIKS-CCIESRETSNYHRCGRTDKG 112
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
VSS QVI++ +RS + + ++EDE+ Y ++LNR+LP +IR I W P
Sbjct: 113 VSSFSQVISLDIRSKLN-----------PEDQYKLEDELPYCKILNRLLPSNIRCIAWCP 161
Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKR 269
P DFSARF+C R YKYFF R NLN+ AM A K +GEHDFRN CKMD AN V NY R
Sbjct: 162 VPNDFSARFNCKFRTYKYFFPRGNLNIDAMNKAVKYIIGEHDFRNICKMDVANGVINYIR 221
Query: 270 HVTSFEISPCYISFE---GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
V + E+ F G + + I AFLWHQ+RC++ VLF+IG+G E +++ L
Sbjct: 222 KVINAEVRMYRQDFRNISGYDMYQLIITSQAFLWHQIRCLMGVLFLIGEGKEEAEIMLEL 281
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355
LD P+KPQYN+A EIPL L C++D
Sbjct: 282 LDIENCPKKPQYNLAHEIPLNLWYCEYDA 310
>gi|383863340|ref|XP_003707139.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Megachile
rotundata]
Length = 420
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 185/320 (57%), Gaps = 26/320 (8%)
Query: 51 DGVEDGTTLVEENRKTESGGCKTGKKK------VKEKMSGTLNHHFKRYVALKVMYFGQR 104
D +E L EEN++ + K +K K + + +KR++ LK Y G
Sbjct: 25 DLIEKLIQLEEENKQLNAIINKRNEKSKDKDTTCKSQKPFDFSKCYKRHILLKFYYLGWD 84
Query: 105 FYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRS 164
GF N + T+E IF AL K+ + ++ S+Y RCGRTDKGVSS QVI++ +RS
Sbjct: 85 CNGFVVQENTDNTIEQHIFAALIKS-CCIESRETSNYHRCGRTDKGVSSFSQVISLDIRS 143
Query: 165 NIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISR 224
+K + N ++EDE+ Y ++LNR+LP +IR W P D SARF C R
Sbjct: 144 KLKPEDQN-----------KLEDELPYCKILNRLLPSNIRCTAWCPVSDDVSARFDCKFR 192
Query: 225 EYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEIS-----P 278
YKYFF R NLN+ AM+ A K +GEHDFRN CKMD AN V NY R + S E+S
Sbjct: 193 TYKYFFPRGNLNIDAMDKAVKYIIGEHDFRNICKMDVANGVVNYMRTIMSAEVSLYRQNS 252
Query: 279 CYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQY 338
+IS G +C + I AFLWHQ+RC++ VL ++GQ E +VI LLD + PRKPQY
Sbjct: 253 KHIS--GYDICQLIITSQAFLWHQIRCLMGVLLLVGQEKEKPEVILELLDISKCPRKPQY 310
Query: 339 NMAPEIPLVLQSCDFDGLKF 358
N+A E+PL L C+++ ++
Sbjct: 311 NLAHEVPLNLWYCEYEAKQW 330
>gi|320163253|gb|EFW40152.1| tRNA-pseudouridine synthase [Capsaspora owczarzaki ATCC 30864]
Length = 548
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 196/336 (58%), Gaps = 30/336 (8%)
Query: 51 DGVEDGTTLVEENRKTE----SGGCKTGKKKVKEKMSGTLNHHF------KRYVALKVMY 100
DG E TT E+ + SGG +K + S F KR++ALK+ Y
Sbjct: 89 DGSETCTTDDVESDSAQASMGSGGAAAESEKPAKGKSSKPERAFDFARFHKRHIALKIAY 148
Query: 101 FGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAI 160
G ++ G A ++E TVE + AL KT +L+ D ++YSRCGRTD GVS+ GQV+++
Sbjct: 149 LGWKYNGLAIQPDVE-TVEGHLISAL-KTCMLIPDLSWANYSRCGRTDAGVSAFGQVVSL 206
Query: 161 YLRSNIKEC-----NTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
+R+N+ E + + + E E++YV LNR LP DIRV+ W+P P F
Sbjct: 207 DVRTNLTEGVGVIQQESAIPFQKGRKTEATHAELEYVFKLNRQLPADIRVVAWTPVPLAF 266
Query: 216 SARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSF 274
ARFSC+ R+YKYFF + N+N+ AM+ A + FVG HD+RNFCK + N V ++ R + +F
Sbjct: 267 DARFSCLYRKYKYFFPKNNMNIEAMQRAAQYFVGTHDYRNFCKTNFDNGVKSFVRRILAF 326
Query: 275 EI--SPCY--------ISFEGN--QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322
++ S C EG ++ + + G AFL+HQVRCM ++LFM+GQGLE +V
Sbjct: 327 DVVKSTCLPINSATDATDLEGQAAEMYELNVLGFAFLYHQVRCMTSILFMVGQGLEPPEV 386
Query: 323 IESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+E +LD P +P YNMA ++PLVL C F+ L++
Sbjct: 387 VEHMLDIEKCPNRPNYNMASDVPLVLYDCVFEDLEW 422
>gi|391333028|ref|XP_003740926.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Metaseiulus
occidentalis]
Length = 457
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/334 (40%), Positives = 192/334 (57%), Gaps = 16/334 (4%)
Query: 34 LSKLSLCRCEKIED---KVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHF 90
L +L+L + + IED H + GT+ K K++ K +MS +
Sbjct: 46 LLRLALSQRQCIEDFKKAAHGSTKCGTSPAGPEDKPSDLRYPKAKRR-KNRMSFDFSRFK 104
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
R+VALK +Y G + GF + + T+E+ IF+AL +T+L V D++ S+Y RCGRTDKG
Sbjct: 105 LRHVALKFLYLGWDYKGFVVQDDTDRTIEAVIFEALYRTKL-VRDRETSNYHRCGRTDKG 163
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE-DEIDYVRVLNRVLPKDIRVIGWS 209
VS+ QVI + LRSN+++ QI +EIDYV++LNRVLP +IR+I WS
Sbjct: 164 VSAFSQVITLDLRSNLEDGVGVVTPPDYRAGRTQISGEEIDYVKILNRVLPAEIRMIAWS 223
Query: 210 PAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYK 268
P SARF C R Y+YFF R L + +M A + GE+DFRN CKMD N V ++
Sbjct: 224 PVDPRLSARFDCRMRSYRYFFPRGRLKVESMREASRLLEGENDFRNLCKMDVGNGVTQFR 283
Query: 269 RHVTSFEISPCYISF----EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIE 324
R V C+I E +C IR +AFLWHQ+RC+VAVL ++G+G ES ++
Sbjct: 284 RRVEK-----CWIEAPDGSEAADMCCFVIRSNAFLWHQIRCIVAVLLLVGEGKESPSIVS 338
Query: 325 SLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
LLD PRKPQY+MA E+ L L ++D ++
Sbjct: 339 DLLDVGKNPRKPQYSMASEVALCLYDSEYDSFEW 372
>gi|430813781|emb|CCJ28906.1| unnamed protein product [Pneumocystis jirovecii]
Length = 353
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 181/281 (64%), Gaps = 19/281 (6%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNME--PTVESEIFKALEKTRLLVADKKESHYSR 143
++++ +RY+A K Y G + G + GN PTVE IF AL+K +L + ++ ++SR
Sbjct: 1 MSNYNQRYIAFKFAYLGWYYNGLVTQGNKTQLPTVEETIFFALKKAKL-IDHERNCNFSR 59
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDI 203
CGRTDKGV+++GQV+A+ +RSN E +E+ EI Y+ +LN++LPK I
Sbjct: 60 CGRTDKGVTAIGQVMALNVRSN--------KPFNEDSEEKW--SEIKYIDILNKLLPKTI 109
Query: 204 RVIGW-SPAPTDFSARFSCISREYKYFFWREN----LNLSAMESAGKKFVGEHDFRNFCK 258
R++ W S P+DFSARFSC R YKY F++++ LN+ M A F+G+HDFRNFCK
Sbjct: 110 RILAWCSDLPSDFSARFSCQKRHYKYLFFKDSPNVQLNIEKMSKAASYFIGKHDFRNFCK 169
Query: 259 MDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+D + + N+ R +T EI+ + E + L + G+AFLWHQVR M+AVLF++GQ L
Sbjct: 170 LDTSKQITNFTRIITRSEINKYNTAEENDSLYVFDLEGTAFLWHQVRSMIAVLFLVGQDL 229
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
E ++I++LLDT+ +KP YN+A ++PL+L C F L +
Sbjct: 230 EKPEIIKTLLDTSKTSQKPIYNIAHDLPLILYDCHFQNLNW 270
>gi|452825099|gb|EME32098.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 433
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 135/332 (40%), Positives = 186/332 (56%), Gaps = 38/332 (11%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCG 145
N H KR +AL++ Y G RF GFAS + + TVE +F+AL KT+L + +++ S YSR
Sbjct: 61 FNKHGKRKIALRICYLGWRFDGFASQPHSDNTVEEHLFRALLKTKL-IENREGSCYSRAA 119
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTDKGVS++ V+++ +RS+I + E E+DY R+LN VLP I +
Sbjct: 120 RTDKGVSAIENVVSLTVRSHI-------------IPPSNGEVELDYPRILNGVLPSGIWI 166
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVH 265
GW+ DF ARFS R Y Y+F E+LNLSAM+ A + FVGEHDFRNFCK D V
Sbjct: 167 TGWTSVDPDFHARFSASYRVYHYYFRPEHLNLSAMQRAAQFFVGEHDFRNFCKADVTQVQ 226
Query: 266 NYKRHVTSFEI-------------------SPCYISFEGNQ----LCAIKIRGSAFLWHQ 302
+++R + S +I + C + N L + ++G AFLWHQ
Sbjct: 227 SFRRVIYSCDIKIVSMTHKSRFEWHLPPESATCSLQSSKNTSSICLAKLVVKGQAFLWHQ 286
Query: 303 VRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSL 362
+RCM ++LFM+G+GLE D+++ +L KP Y MA EIPLVL F GL F S
Sbjct: 287 IRCMASILFMVGEGLEKEDIVKDMLQHECFGAKPLYRMASEIPLVLSQIGFGGLSFQISS 346
Query: 363 DAGHDLRLHLRNECQVYQLQAAIFHEALLNCL 394
A D+ L+ C +AAI + LLN L
Sbjct: 347 KAYTDVEKFLQEACTSLLCKAAILKD-LLNSL 377
>gi|156537085|ref|XP_001602396.1| PREDICTED: tRNA pseudouridine synthase 3-like [Nasonia vitripennis]
Length = 421
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 183/296 (61%), Gaps = 29/296 (9%)
Query: 73 TGKKKVKEKMSGTLNHHF------KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKAL 126
T +KK KEK+S T N F KR++ LK Y G + GFA+ + T+E +F AL
Sbjct: 48 TAEKK-KEKVSST-NKKFDFAKCHKRHIFLKFYYLGWDYQGFAAQEDTTSTIEYYLFAAL 105
Query: 127 EKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE 186
K+ L+ ++ S+Y RCGRTDKGVS+ QVI++ +RS + E +++ +
Sbjct: 106 TKS-CLIESRETSNYHRCGRTDKGVSAFSQVISLDIRSRL-----------EPEKQDNLS 153
Query: 187 DEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKK 246
DE+ Y ++LNR+LPK+IR WSPA + SARF C R YKYFF R NLN+ AM+ A K
Sbjct: 154 DELHYCKMLNRLLPKNIRCFSWSPAHPEMSARFDCKFRSYKYFFPRGNLNIEAMDKAAKL 213
Query: 247 FVGEHDFRNFCKMDAAN-VHNYKRHVTSFEIS------PCYISFEGNQLCAIKIRGSAFL 299
VG HDFRN CKMD AN V N+ R++ + +++ P IS G +C + I+ +AFL
Sbjct: 214 TVGSHDFRNLCKMDVANGVVNFFRNIVNAQVTCIKREDPEKIS--GYDMCELSIKSNAFL 271
Query: 300 WHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355
WHQ+RC++ +L ++G+ E +VI LLD PRKPQYN+ IPL L C++DG
Sbjct: 272 WHQIRCIMGILLLVGREQEKPEVITDLLDVEKCPRKPQYNLGHYIPLNLFYCEYDG 327
>gi|66805521|ref|XP_636482.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
gi|60464862|gb|EAL62978.1| tRNA pseudouridylate synthase [Dictyostelium discoideum AX4]
Length = 491
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 126/297 (42%), Positives = 179/297 (60%), Gaps = 34/297 (11%)
Query: 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
+KR+VA K+ Y G F+GFA+ E T+E+ + KA KT L+ D K ++Y + GRTDK
Sbjct: 83 YKRHVAFKLSYVGWPFFGFAAQDCSEETIENYLIKAFLKTS-LIPDIKTANYFKSGRTDK 141
Query: 150 GVSSVGQVIAIYLRSNIKE--------------------------CNTNNASMGETVQEE 183
GVS+ GQVI++Y+RSN+KE N+ ++
Sbjct: 142 GVSAYGQVISLYVRSNLKEGEGIIPPKDQSGGPISNRTKSNKTELTKNNDNEKARKGNKK 201
Query: 184 QIED--EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAME 241
IED E+ Y+++LN VLP +IR++ W+P P F+ARFS +SR YKYFF L+L+ M+
Sbjct: 202 SIEDDEELPYIKMLNGVLPPEIRILAWAPVPFHFNARFSTLSRTYKYFFNPNGLDLNLMK 261
Query: 242 SAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWH 301
A K ++GEH++ NFCK+D NV ++ R + F+I E ++L I+G AFLWH
Sbjct: 262 EASKLYLGEHNYINFCKID-VNVKSFMRVILQFDIEKV----ENSELYVATIKGFAFLWH 316
Query: 302 QVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
Q+RCM+AVLF+IGQ +I +I LLDTN KP Y MA E+PLVL C +D + F
Sbjct: 317 QIRCMMAVLFLIGQKKANISLITQLLDTNKTITKPPYEMASEVPLVLFDCGYDDIDF 373
>gi|301122837|ref|XP_002909145.1| tRNA pseudouridine synthase, putative [Phytophthora infestans
T30-4]
gi|262099907|gb|EEY57959.1| tRNA pseudouridine synthase, putative [Phytophthora infestans
T30-4]
Length = 510
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/284 (42%), Positives = 176/284 (61%), Gaps = 18/284 (6%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCG 145
++++ R VA+K +Y G+++ GFA +M TVE + +AL +++L + + ++ YSRCG
Sbjct: 67 MSNYTMRAVAVKFLYLGEKYAGFARQDHMPETVERYLLEALVRSKL-IENIDDAGYSRCG 125
Query: 146 RTDKGVSSVGQVIAIYLRSNIKE-------CNTNNASMGETVQ------EEQIEDEIDYV 192
RTD+GVS+ GQV+A+ +RSN+ + ++ GE Q EE+ E+DY
Sbjct: 126 RTDRGVSAFGQVVALRVRSNLPATAELLSAASIDDVRPGEKFQVRLATGEEKTLTEVDYA 185
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+NR LP DIRV + +FSARF C +R Y+YFF R +L++ M +A + VG+HD
Sbjct: 186 SHINRALPADIRVYAVASCRPEFSARFDCKARMYRYFFVRRDLDIEKMRTAAQYLVGKHD 245
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPC---YISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
FRNFC++D N H ++R+V SFEI C Q+ ++ G AFLWHQVRCMV V
Sbjct: 246 FRNFCRID-PNCHVFERNVRSFEIVECPGQRADDPSQQMYRCEVFGRAFLWHQVRCMVEV 304
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
LF+IG G E +I LLD PRKPQY+MA ++PLVL C F
Sbjct: 305 LFLIGSGREEPSIIPKLLDIAQTPRKPQYDMASDLPLVLHDCYF 348
>gi|440803221|gb|ELR24130.1| tRNA pseudouridine synthase A, putative [Acanthamoeba castellanii
str. Neff]
Length = 488
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 123/315 (39%), Positives = 182/315 (57%), Gaps = 20/315 (6%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCG 145
++ + +RY+ALK+ Y G ++ G A + + T+E+ + AL++ +L + D+ S+Y+R G
Sbjct: 96 MSRYHQRYIALKLAYLGWQYDGLAVQNDTDNTIETHLIAALKRVKL-ITDRPSSNYNRSG 154
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETV--------QEEQIEDEIDYVRVLNR 197
RTDKGVS++G V RSN+K N + + + V + ++E+ Y++++N
Sbjct: 155 RTDKGVSALGNV-----RSNLKPANPIDENGAKAVIYADTPLDTSDPRKEEMPYLKMINS 209
Query: 198 VLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFC 257
LP DI+V+ W+ P DFSARFS R YKYFF ENL L M A KK GEHDFR+FC
Sbjct: 210 ALPPDIQVLAWTTVPKDFSARFSTKHRTYKYFFLAENLQLERMREAAKKIEGEHDFRHFC 269
Query: 258 KMDAANVHNYKRHVTSFEISPCYISF-----EGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
KMD NVHN+ R + SF+I+P EG+ + + I G AFLWHQVR M A+LF+
Sbjct: 270 KMDVVNVHNFVRTIYSFDIAPAESGVVPGVAEGS-MYTMTICGQAFLWHQVRMMAAILFL 328
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHL 372
+G G E V++ LLD +P Y MA EIPLV +D +++T A +
Sbjct: 329 VGSGQEEPTVVDELLDVAKFEGRPHYQMASEIPLVFWEAAYDEIEWTYDPVAVSQVHKVF 388
Query: 373 RNECQVYQLQAAIFH 387
+ +Q A+ H
Sbjct: 389 SERWKWLSIQTAVAH 403
>gi|325186551|emb|CCA21092.1| tRNA pseudouridine synthase putative [Albugo laibachii Nc14]
Length = 493
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 191/324 (58%), Gaps = 23/324 (7%)
Query: 59 LVEENRKTESGGCKTGKKKVKEKMSGT----LNHHFKRYVALKVMYFGQRFYGFASDGNM 114
++ E+ K KT K+ KE S + ++ +R VA+K +Y G+R+ GFA ++
Sbjct: 41 IIAESIKNTLQAKKTKKRLPKENSSDKRIFCMENYRQRMVAMKFLYSGERYCGFARQDHI 100
Query: 115 EPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIK------- 167
E T+E +F +++T+L+ + + YSRCGRTDKGVS+ GQVI I +RSN+
Sbjct: 101 EETIEKYLFDTMQRTKLITS-IDDCCYSRCGRTDKGVSAFGQVIGIKVRSNVPIDAELLD 159
Query: 168 -ECNTNNASMGET---VQEEQIED--EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSC 221
+ AS G Q+ +I E+DY LNR LP DIRV AP +FSARF+C
Sbjct: 160 VDSLDQVASGGRVRVKTQDGRIRKITEVDYAASLNRTLPSDIRVYSVVNAPNNFSARFNC 219
Query: 222 -ISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCY 280
R Y+YFF +++L++ M A F G HDFRNFC++D N + R+V SF+I
Sbjct: 220 DRGRSYRYFFMKKDLDIEKMRLAAIGFEGLHDFRNFCRIDT-NCQTFDRNVRSFKIKSSD 278
Query: 281 ISFEGN---QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQ 337
+ N Q+ +I G+AFLWHQVRCMV++LF+IGQG E +++ +LD PRKPQ
Sbjct: 279 EIGDKNPYRQMYYFEIHGNAFLWHQVRCMVSILFLIGQGREEPSIVKKMLDIEKYPRKPQ 338
Query: 338 YNMAPEIPLVLQSCDFDGLKFTCS 361
Y +AP+ PLVL C FD + F S
Sbjct: 339 YAIAPDHPLVLHDCRFDSINFDYS 362
>gi|303275814|ref|XP_003057201.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461553|gb|EEH58846.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 281
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 125/272 (45%), Positives = 163/272 (59%), Gaps = 16/272 (5%)
Query: 92 RYVALKVMYFGQRFYGFASDGN-----MEPTVESEIFKALEKTRLLVADKK--ESHYSRC 144
R++AL V Y G ++GFAS GN PT+E +F AL++TRL+ D + Y+RC
Sbjct: 16 RHIALHVAYAGWDYHGFASQGNDAAEARSPTIEGALFAALKRTRLIADDATWTDVDYTRC 75
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
GRTD GVS++GQ++++ RS + + DE+DY +LNR LP DIR
Sbjct: 76 GRTDAGVSAMGQLVSLRARSR-----GTRYTPPSPPPPAKDADELDYPSILNRALPDDIR 130
Query: 205 VIGWSPAPTDFSARFSCISREYKYFFWREN--LNLSAMESAGKKFVGEHDFRNFCKMDAA 262
V GW FSARF C R YKYFF + L+L M A ++ GEHDFRNFCKMD
Sbjct: 131 VTGWCYVDEAFSARFDCEWRHYKYFFTLHDGGLDLEKMRDAARRLEGEHDFRNFCKMDVK 190
Query: 263 NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322
NVHN+ R + E + S +LC I ++G+AFLWHQVRC+ AVLF++G G E V
Sbjct: 191 NVHNHARRI--LESASSSASGAPPRLCYISVKGTAFLWHQVRCVAAVLFLVGLGKEPPSV 248
Query: 323 IESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
I+ LLD RKPQY MAPE PL+L + FD
Sbjct: 249 IDDLLDLEKTTRKPQYEMAPEEPLLLWASGFD 280
>gi|449528776|ref|XP_004171379.1| PREDICTED: tRNA pseudouridine(38/39) synthase-like [Cucumis
sativus]
Length = 198
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/156 (71%), Positives = 125/156 (80%)
Query: 240 MESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFL 299
ME AGKKFVGEHDFRNFCKMDAANVHNY+R + SF+ISPC + EGN L A I GSAFL
Sbjct: 1 MERAGKKFVGEHDFRNFCKMDAANVHNYRRRIMSFDISPCDVRTEGNPLWAFNIEGSAFL 60
Query: 300 WHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359
WHQVRCMVAV+FM+GQ LE DVI+ LLD PRKPQY MA E PLVL SC+F+G+KF
Sbjct: 61 WHQVRCMVAVVFMVGQDLEDPDVIDILLDPLRTPRKPQYVMASENPLVLHSCEFEGVKFR 120
Query: 360 CSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLP 395
CS DAG L+LHL NE + Y+LQAAIF EALL+CLP
Sbjct: 121 CSSDAGEALQLHLSNEIRTYKLQAAIFKEALLSCLP 156
>gi|332024452|gb|EGI64650.1| tRNA pseudouridine synthase 3 [Acromyrmex echinatior]
Length = 443
Score = 237 bits (605), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 176/298 (59%), Gaps = 23/298 (7%)
Query: 72 KTGKKKVKEKMSGTLNHHF------KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKA 125
+T K KE+ G + F KR++ LK Y G ++GFA + T+E +F A
Sbjct: 48 RTDTKMKKEETPGKVRKSFDFSRCHKRHILLKFYYLGWDYHGFAVQEDNTDTIEHHLFAA 107
Query: 126 LEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQI 185
L K+ + ++ S+Y RCGRTDKGVSS QVI++ +RS ++ N +N S
Sbjct: 108 LLKS-CCIESRESSNYHRCGRTDKGVSSFSQVISLDVRSRLEPENQDNLS---------- 156
Query: 186 EDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGK 245
DE+ Y ++LNR+LP +IR I W P + FSARF C R Y+YFF R NL++ AM+ A K
Sbjct: 157 -DELPYCKILNRLLPANIRCIAWCPVSSIFSARFDCKFRSYRYFFPRGNLDIEAMDKAAK 215
Query: 246 KFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPC----YISFEGNQLCAIKIRGSAFLW 300
+G+HDFRN CKMD AN V N+KR V ++ G +C ++I AFLW
Sbjct: 216 YVIGDHDFRNICKMDVANGVINFKRTVMDARVNSLNDQNVEKSTGYDMCELEITSQAFLW 275
Query: 301 HQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
HQ+RC++ +L +IGQ E ++I LLD P+KPQYNMA ++PL L CD++ + +
Sbjct: 276 HQIRCLMGILLLIGQRKEEPEIILKLLDIETCPQKPQYNMAHQVPLNLWYCDYESINW 333
>gi|348675907|gb|EGZ15725.1| hypothetical protein PHYSODRAFT_346666 [Phytophthora sojae]
Length = 553
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/284 (42%), Positives = 175/284 (61%), Gaps = 18/284 (6%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCG 145
++++ R VA+K +Y G+++ GFA +M TVE + +AL +++L + + ++ YSRCG
Sbjct: 110 MSNYTMRAVAVKFLYLGEKYAGFARQDHMPETVERYLLEALVRSKL-IENVDDAGYSRCG 168
Query: 146 RTDKGVSSVGQVIAIYLRSNIKEC-------NTNNASMGETVQ------EEQIEDEIDYV 192
RTD+GVS+ GQV+A+ +RSN+ + ++ G+ Q E + E+DY
Sbjct: 169 RTDRGVSAFGQVVALRIRSNLPATAELLSAPSIDDVRPGDKFQVRLESGEIKTLTEVDYA 228
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+NR LP DIRV + +FSARF C +R Y+YFF R +L++ M +A + VG+HD
Sbjct: 229 SHINRALPADIRVYSVASCRPEFSARFDCKARMYRYFFVRRDLDIEKMRTAAQFLVGKHD 288
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPC---YISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
FRNFC++D N H Y+R+V SFEI C Q+ ++ G AFLWHQVRCMV V
Sbjct: 289 FRNFCRID-PNCHVYERNVRSFEIVECPGQRADDPSQQMFRCEVFGRAFLWHQVRCMVEV 347
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
LF+IG G E +I LLD PRKPQY+MA ++PLVL C F
Sbjct: 348 LFLIGSGQEEPSIIPRLLDIAQTPRKPQYDMASDLPLVLHDCYF 391
>gi|384499620|gb|EIE90111.1| hypothetical protein RO3G_14822 [Rhizopus delemar RA 99-880]
Length = 444
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 181/285 (63%), Gaps = 20/285 (7%)
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA 134
K K + ++ + +R +ALKV Y G + GFA + N+ PTVE EIFKAL+K L+ +
Sbjct: 58 KDKSRRPFDISQYGQRRIALKVAYLGWNYCGFAHLKEKNI-PTVEGEIFKALQKCSLITS 116
Query: 135 DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRV 194
+E +YSR GRTDKGVS +GQVIA+ +RS ++ ++E + ++ Y+ +
Sbjct: 117 -PEECNYSRGGRTDKGVSGLGQVIALDVRSTQRKL----------IKEHGDDRDLPYINM 165
Query: 195 LNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFR 254
+N LP+DIR++ W+P T F+ARF C+SR YKYFF +E ++ M A +G HDFR
Sbjct: 166 INSFLPEDIRILAWAPVATTFNARFDCLSRTYKYFFKKEGQDIERMREAASYMIGSHDFR 225
Query: 255 NFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
NFC +DAA N+ +Y R + SFEI+P F +K++G+ FLWHQVR +++VLF++
Sbjct: 226 NFCLLDAARNLQHYTREIISFEINPVEQDF-----YEVKLKGTGFLWHQVRYIMSVLFLV 280
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
GQ LE +I+ LL+ + IP +P Y +A IPL+L C+ +K+
Sbjct: 281 GQRLEHPAIIQDLLNIDKIPARPDYPLASGIPLMLYDCEIQNIKW 325
>gi|145350766|ref|XP_001419769.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580001|gb|ABO98062.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 257
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/271 (45%), Positives = 165/271 (60%), Gaps = 27/271 (9%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNMEP----TVESEIFKALEKTRLLVADK---KE 138
+ H R +AL V Y G ++GFAS G TVE +F AL KT+L+ + + K
Sbjct: 5 FSKHAARKIALHVCYLGWDYHGFASQGAANAAAPRTVEQALFDALAKTKLVESARDVFKV 64
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRV 198
+ Y+RCGRTD+GVS +GQ++ + RSN E +++E+DYV +LNR
Sbjct: 65 ADYARCGRTDRGVSGLGQIVTLRARSN---------------GAEGVDEELDYVALLNRA 109
Query: 199 LPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN-LNLSAMESAGKKFVGEHDFRNFC 257
LP D+R +GW+P + +ARF C R+YKYFF + N L+L AM A + F G HDFRNFC
Sbjct: 110 LPNDVRALGWAPVDDELNARFDCEWRQYKYFFEKTNGLDLGAMREAARAFEGVHDFRNFC 169
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+MDA NV ++ R+V I + +L I +RG+AFLWHQVRCM +VLFM+G G
Sbjct: 170 RMDAENVKSFTRNVLECTIEESH----DGKLMYINVRGTAFLWHQVRCMASVLFMVGLGH 225
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
ES V+ LLD PRKPQY MAPE L+L
Sbjct: 226 ESPTVVTELLDLERTPRKPQYPMAPEHALLL 256
>gi|357625661|gb|EHJ76033.1| putative pseudouridylate synthase [Danaus plexippus]
Length = 504
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 167/268 (62%), Gaps = 18/268 (6%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R V L ++YFG ++G A + T+E +F AL K+ L+ +++S Y RCGRTDKGV
Sbjct: 76 RRVLLHIIYFGWDYHGLAVQEDSTHTIEHYLFNALVKS-CLIESREQSQYHRCGRTDKGV 134
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
S+ GQ+I+I LRS ++ +T+ +S EI Y ++LNR+ P+DI+ + W P
Sbjct: 135 SAFGQIISISLRSKLEPSSTDYSS------------EIQYCKILNRLFPRDIKAVAWMPI 182
Query: 212 P---TDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNY 267
P DFSARF C R+YKY+F + NLN++AM A ++ +G HDFR+ CKMD N V +
Sbjct: 183 PDDRPDFSARFDCKGRQYKYYFPKSNLNITAMREACRQLIGSHDFRHLCKMDVGNGVTEF 242
Query: 268 KRHVTSFEISPCYISFE-GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
R V S +I E + A+ I G+AFLWHQ+RC++ VL ++GQG ES +I L
Sbjct: 243 TRRVVSADIIALDKDCEQTTSMYALVIEGNAFLWHQIRCIMGVLLLVGQGHESPGIIAEL 302
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
LD PRKPQYNMA ++PL L C +D
Sbjct: 303 LDVEANPRKPQYNMALDLPLNLFCCRYD 330
>gi|238882564|gb|EEQ46202.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 491
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 172/285 (60%), Gaps = 22/285 (7%)
Query: 92 RYVALKVMYFGQRFYGFAS--DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
R+VA K Y G + G A + PTVE KAL K +L+ +E +SRCGRTDK
Sbjct: 132 RFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFSRCGRTDK 191
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--IG 207
GVS++ QVI+I +RSNI N +N + EIDY+ VLN LP DI+V I
Sbjct: 192 GVSAMNQVISINVRSNITLENQSNPEFDDL--------EIDYISVLNANLPSDIKVHSIC 243
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHN 266
P P DF ARFSC+SR Y+Y F +++L++ M K + G HDFRNFCK+D + + N
Sbjct: 244 LRPPP-DFDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITN 302
Query: 267 YKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
+ R + +I I + C ++GSAFLWHQVRCMVA+LF IGQGLES +I L
Sbjct: 303 FVREIYQSQI----IHLHQDYYC-FDLKGSAFLWHQVRCMVAILFTIGQGLESPSIITDL 357
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLH 371
+DTN P KPQY MA +IPLVL C+F +++ + D + +LH
Sbjct: 358 MDTNKFPTKPQYEMAHDIPLVLYDCEFPSMEWKSTDD---EYKLH 399
>gi|322786132|gb|EFZ12740.1| hypothetical protein SINV_14818 [Solenopsis invicta]
Length = 444
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 183/302 (60%), Gaps = 23/302 (7%)
Query: 66 TESGGCKTGKKKVKEKMSGTLNHH--FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIF 123
T++ K+ K++ K+ T + KR++ LK Y G ++GF + T+E +F
Sbjct: 64 TKNTDIKSKKEETSWKVRKTFDFSRCHKRHILLKFYYLGWDYHGFTVQEDNCNTIEHHLF 123
Query: 124 KALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE 183
AL K+ + ++ ++Y RCGRTDKGVSS QVI++ +RS + + N S
Sbjct: 124 AALLKS-CCIESRESANYHRCGRTDKGVSSFSQVISLDIRSKLAPEDQGNLS-------- 174
Query: 184 QIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESA 243
+E+ Y ++LNR+LP +IR + W P ++FSARF C R YKYFF R NL++ AM A
Sbjct: 175 ---NELPYCKMLNRLLPTNIRCVAWCPVASNFSARFDCKYRRYKYFFPRGNLDIDAMNKA 231
Query: 244 GKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFE------GNQLCAIKIRGS 296
K VG+HDFRN CKMD AN + N+KR V ++S +++ + G +C ++I
Sbjct: 232 AKYVVGDHDFRNICKMDVANGIINFKRTVIDAKVS--FVNEQSMEKSTGYDMCELEITSQ 289
Query: 297 AFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL 356
AFLWHQ+RC++ +L ++GQ E +VI LLDT P+KPQYNMA ++PL L CD++ +
Sbjct: 290 AFLWHQIRCLMGILLLVGQRKEEPEVILKLLDTETCPQKPQYNMAHQVPLNLWHCDYENI 349
Query: 357 KF 358
K+
Sbjct: 350 KW 351
>gi|307177137|gb|EFN66370.1| tRNA pseudouridine synthase 3 [Camponotus floridanus]
Length = 345
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 176/284 (61%), Gaps = 16/284 (5%)
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE 138
K + S + + KR++ LK Y G ++GF + T+E +F AL K+ + ++
Sbjct: 4 KVRKSFDFSRYHKRHILLKFYYLGWDYHGFTVQEDNNDTIEHHLFTALLKS-CCIESRES 62
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRV 198
++Y RCGRTDKGVSS QVI++ +RS ++ N +N S +E+ Y ++LNR+
Sbjct: 63 ANYHRCGRTDKGVSSFSQVISLDIRSRLEPENQHNLS-----------EELPYCKILNRL 111
Query: 199 LPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCK 258
LP +IR I W P +FSARF C R YKYFF + NL++ AM+ + K +G+HDFRN CK
Sbjct: 112 LPTNIRCIAWCPVSPNFSARFDCKYRTYKYFFPKSNLDIDAMDKSVKYAIGDHDFRNICK 171
Query: 259 MDAAN-VHNYKRHVTSFEISPCYISFE---GNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
MD AN V N+KR V ++S + E G +C ++I AFLWHQ+RC++ +L ++G
Sbjct: 172 MDVANGVINFKRTVIDAKVSMSNQNVEKITGYNMCELEITSQAFLWHQIRCLMGILLLVG 231
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
Q E ++I LL+ P+KPQYNMA E+PL L CD++G+++
Sbjct: 232 QRKEEPEIILKLLNIETCPQKPQYNMAHEVPLNLWYCDYEGIEW 275
>gi|320582058|gb|EFW96276.1| Non-essential tRNA:pseudouridine synthase [Ogataea parapolymorpha
DL-1]
Length = 404
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 125/270 (46%), Positives = 173/270 (64%), Gaps = 18/270 (6%)
Query: 91 KRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLV-ADKKESHYSRCGRT 147
KR +ALK Y G ++G A +D + PTVE I KALEKT+L+ D + +SRCGRT
Sbjct: 57 KRRIALKFSYLGWNYHGLAYQNDTSNIPTVELFILKALEKTKLIRNLDPTDCDFSRCGRT 116
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV-- 205
DKGVS++ QVI++ +RSN+ + M + + + E+DYV++LN+VLP+DIR+
Sbjct: 117 DKGVSAMNQVISLVVRSNLTQ-----DEMANPLNDVK---ELDYVKILNKVLPEDIRIHS 168
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NV 264
I P P F ARFSC+SR YKYFF + NLN+ M+ A FVGE DFRNFCK+D + +
Sbjct: 169 ICLRP-PEGFDARFSCLSRHYKYFFEQANLNIEKMQQAASYFVGEQDFRNFCKVDGSKQI 227
Query: 265 HNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIE 324
NYKR + S I G++ +RGSAFLWHQVR M+++LF++GQ LE +++
Sbjct: 228 VNYKRKIISSSIERTKF---GHKTYVFSLRGSAFLWHQVRSMMSILFLVGQELEEPEIVR 284
Query: 325 SLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
LLD P +P Y +A +PLVL C+FD
Sbjct: 285 KLLDVKLFPGRPNYTIASPLPLVLYDCEFD 314
>gi|68490066|ref|XP_711154.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|68490103|ref|XP_711136.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|46432414|gb|EAK91897.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
gi|46432433|gb|EAK91915.1| likely tRNA pseudouridine synthase [Candida albicans SC5314]
Length = 489
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 171/285 (60%), Gaps = 22/285 (7%)
Query: 92 RYVALKVMYFGQRFYGFAS--DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
R+VA K Y G + G A + PTVE KAL K +L+ +E +SRCGRTDK
Sbjct: 130 RFVAFKFAYLGWNYNGLALQLEPTPLPTVEEVFLKALAKVKLIKEPIEEVKFSRCGRTDK 189
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--IG 207
GVS++ QVI+I +RSNI N +N + EIDY+ VLN LP DI+V I
Sbjct: 190 GVSAMNQVISINVRSNITLENQSNPEFDDL--------EIDYISVLNANLPSDIKVHSIC 241
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHN 266
P P DF ARFSC+SR Y+Y F +++L++ M K + G HDFRNFCK+D + + N
Sbjct: 242 LRPPP-DFDARFSCLSRHYRYIFRKQDLDIELMNQGAKLYQGIHDFRNFCKLDGSKQITN 300
Query: 267 YKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
+ R + +I I + C ++GSAFLWHQVRCMVA+LF IGQ LES +I L
Sbjct: 301 FVREIYQSQI----IHLHQDYYC-FDLKGSAFLWHQVRCMVAILFTIGQSLESPSIITDL 355
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLH 371
+DTN P KPQY MA +IPLVL C+F +++ + D + RLH
Sbjct: 356 MDTNKFPTKPQYEMAHDIPLVLYDCEFPSMEWKSTDD---EYRLH 397
>gi|290562699|gb|ADD38745.1| tRNA pseudouridine synthase 3 [Lepeophtheirus salmonis]
Length = 420
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 184/306 (60%), Gaps = 12/306 (3%)
Query: 70 GCKTGKKKVKEKMSGT-LNHHF--KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKAL 126
G KK V+ K G +H KR V ++ YFG ++GF + + T+E+ +FKAL
Sbjct: 33 GDSRDKKIVRHKKKGREFDHSLYKKRKVLFQITYFGWNYHGFTTQEDSCMTIEAHLFKAL 92
Query: 127 EKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKE-CNTNNASMGETVQEEQI 185
T L+ ++ S+Y RCGRTDKGVS+ QVI+I +R+N+KE + + +
Sbjct: 93 LTT-CLIQSRETSNYHRCGRTDKGVSAFRQVISIDVRTNLKEGIGVFDYPDCKADSRPDM 151
Query: 186 EDEIDYVRVLNRVLPKDIRVIGWSPAPT-DFSARFSCISREYKYFFWRENL-NLSAMESA 243
EIDY++++N LP DI++I W+PA + SARF C R YKYFF ++ +LS M A
Sbjct: 152 PHEIDYIKIINSNLPPDIQLIAWTPAQNRELSARFDCKKRTYKYFFPLGSIKSLSKMNEA 211
Query: 244 GKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGN----QLCAIKIRGSAF 298
G K VG HDFRNFCKMD +N V Y R + + S S E LC +K+ G+AF
Sbjct: 212 GAKLVGSHDFRNFCKMDVSNGVLTYIRRMVNVSTSVLEPSKEKESSPYDLCVLKVEGNAF 271
Query: 299 LWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
LWHQ+RC+V VLF IGQG E ++I+ LLD P +PQY +A EIPL L C ++GL +
Sbjct: 272 LWHQIRCIVTVLFHIGQGREEPELIDELLDIEKNPCRPQYGLASEIPLNLFDCSYEGLTW 331
Query: 359 TCSLDA 364
+L++
Sbjct: 332 DYNLES 337
>gi|290984657|ref|XP_002675043.1| predicted protein [Naegleria gruberi]
gi|284088637|gb|EFC42299.1| predicted protein [Naegleria gruberi]
Length = 430
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 202/362 (55%), Gaps = 35/362 (9%)
Query: 46 EDKVHDG-VEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQR 104
+D H+ V+ T EE RK+ESG + KKK K++ + R++ALK+ Y G
Sbjct: 21 KDMTHEELVKIATLYQEEKRKSESGNKQNKKKKKKKEQVIDWSTQTYRHIALKIAYLGFN 80
Query: 105 FYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRS 164
+ G + + T+E +F+AL KT L+ + +++CGRTDKGVS++GQV++ R
Sbjct: 81 YQGLSKQLHTPNTIEHHLFEAL-KTLKLIEHEDNCEFTKCGRTDKGVSALGQVVSFNCRY 139
Query: 165 NIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISR 224
N K+ DYVR++N +LP DIRV+ W P DF ARF C+ R
Sbjct: 140 NPKKN--------------------DYVRLINSLLPDDIRVLAWCPVSKDFDARFGCLQR 179
Query: 225 EYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEI--SPCYIS 282
YKY+F R+NLN+ M+ A FVGEHDFRNFCK++ V N++R + S EI S
Sbjct: 180 TYKYYFIRQNLNIEKMKQAAAHFVGEHDFRNFCKINEE-VTNFRRRILSMEIIKSDLLHQ 238
Query: 283 FEGN----QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQY 338
GN ++ I + G++FLWHQVRCM A+LF+IG+G E VI LLD +P Y
Sbjct: 239 QHGNDEYFEIYEIVVCGTSFLWHQVRCMTAILFLIGEGKEEPSVIPELLDIEKYKARPVY 298
Query: 339 NMAPEIPLVLQSCDFDGLKFTCSLD---AGHDLRLHLRNECQVYQLQAA---IFHEALLN 392
++A E PLVL C F+ LK+ + D + DL H + L++ IF++A N
Sbjct: 299 HIASEFPLVLYDCVFEDLKWIHTNDMISSQADLTNHFYEMWRSSSLKSTMYNIFYQAANN 358
Query: 393 CL 394
L
Sbjct: 359 TL 360
>gi|255726904|ref|XP_002548378.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404]
gi|240134302|gb|EER33857.1| tRNA pseudouridine synthase 3 [Candida tropicalis MYA-3404]
Length = 437
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 177/306 (57%), Gaps = 19/306 (6%)
Query: 70 GCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALE 127
G T K K K + R+VA K Y G + G F + PTVE I K L
Sbjct: 52 GTSTLPKVKKSKKQFDWSKQNMRFVAFKFAYLGWNYNGLAFQLEPTPLPTVEEIILKTLA 111
Query: 128 KTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED 187
K +L+ +E +SRCGRTDKGVS++ QVI+I LRSN+ + + N + +
Sbjct: 112 KVKLIKEPIEEVKFSRCGRTDKGVSAMNQVISIELRSNLSKEDQANPELDDK-------- 163
Query: 188 EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGK 245
E+DY+ +LN LP DI+V I P P DF ARFSCISR Y+Y F ++NL++ M
Sbjct: 164 EVDYLSILNANLPSDIKVHSICLRP-PEDFDARFSCISRHYRYIFKKQNLDIDLMNQGAS 222
Query: 246 KFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
+ G HDFRNFCK+D + + N++R + S +I + + C ++GSAFLWHQVR
Sbjct: 223 LYQGIHDFRNFCKLDGSKQITNFQREIYSSKI----LHLHDDYYC-FDLKGSAFLWHQVR 277
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
CMVA+LF IGQGLE +++ L+D P KPQY MA +IPLVL C+F +++ + D
Sbjct: 278 CMVAILFTIGQGLEKPEIVTELMDMEKYPTKPQYEMAHDIPLVLYDCEFPEMEWKVTKDE 337
Query: 365 GHDLRL 370
LR+
Sbjct: 338 HKFLRV 343
>gi|403375889|gb|EJY87920.1| Pseudouridine synthase [Oxytricha trifallax]
Length = 482
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/373 (37%), Positives = 209/373 (56%), Gaps = 45/373 (12%)
Query: 9 ISSLQSQLEALQNRV-------KELEAD--NAKL-LSKLSLCRCEKIEDKVHD-GVEDGT 57
IS+ +QLE QN + ++LE D N+ SK++L D + ED
Sbjct: 11 ISNQSNQLEQNQNSLANDKEVAEQLENDQNNSNFHYSKINLTEKSLTLDHLSKFNKEDLI 70
Query: 58 TLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPT 117
L+ EN+ + K+ + S + H + +A K Y G+ + G A N + T
Sbjct: 71 NLIIENK--QKLIPPKSHHKIFNQRSFDFSKHKQVKIAFKFSYLGKDYKGLAIQTNTDET 128
Query: 118 VESEIFKALEKTRLLVADKK--ESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNAS 175
+E IF AL++ L+ D +S Y+RCGRTDKGVS++G V+++Y+R
Sbjct: 129 IEGRIFAALKRACLVQPDIPIFKSQYTRCGRTDKGVSALGNVLSLYVR------------ 176
Query: 176 MGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENL 235
+++D+ +Y +VLN LP DIR+I +S P F +RFSCI REYKYFF ++N+
Sbjct: 177 --------KLKDD-NYCQVLNHCLPADIRMISFSEVPAHFDSRFSCIYREYKYFFVQQNM 227
Query: 236 NLSAMESAGKKFVGEHDFRNFCKMDAA-------NVHNYKRHVTSFEISPCYISFEGNQL 288
N+ M+ A +K++G HDFRNFCK D + + N+ R + F+I +I+ + +L
Sbjct: 228 NIEKMKQAARKYLGIHDFRNFCKKDESVKLEDDEDDQNFMRRIYRFDIVQQHINVQNEKL 287
Query: 289 CA--IKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPL 346
+ IRGSAFLWHQVRCM+AVLFMIG+G E VI+ L D +P +P YN+A E L
Sbjct: 288 SIWHVVIRGSAFLWHQVRCMMAVLFMIGRGEEDESVIDLLYDIEKLPERPNYNIASEFGL 347
Query: 347 VLQSCDFDGLKFT 359
+L C FD ++++
Sbjct: 348 ILNECGFDDIEWS 360
>gi|302309334|ref|NP_986663.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|299788309|gb|AAS54487.2| AGL003Wp [Ashbya gossypii ATCC 10895]
gi|374109914|gb|AEY98819.1| FAGL003Wp [Ashbya gossypii FDAG1]
Length = 432
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 200/353 (56%), Gaps = 28/353 (7%)
Query: 57 TTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA--SDGNM 114
T++ E+ K + K K K + + R++ALK Y G + G A D
Sbjct: 47 TSVASEDPKRKKTNENAKKVKTKTPKEFDFSKYNTRFIALKFAYLGWNYNGLAIQKDPTP 106
Query: 115 EPTVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN 173
PTVE I +A+ K R++ + + + +SRCGRTDKGVS++ QVI++ +RSN
Sbjct: 107 LPTVEGTILEAMNKCRMVPSMVPQDYKFSRCGRTDKGVSAMNQVISLRVRSN-------- 158
Query: 174 ASMGETVQEEQIED--EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYF 229
+ QE+ D EI Y+ +LN++LP DIR+ I P P F ARFSC R YKY
Sbjct: 159 --LTPQEQEDPANDAREIPYIHILNQLLPDDIRISAICLRP-PKGFDARFSCKYRHYKYL 215
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F + L+LS ME A + + GEHDFRNFCK+D + + N+KR + S +I + +G+
Sbjct: 216 FNKSGLDLSKMEEAARLYEGEHDFRNFCKLDGSKQITNFKRTILSAKI----LHVDGDMY 271
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
C + GSAFLWHQVRCM+A LF++GQGLE + +I +LLD P+KP Y+MA +IPL+L
Sbjct: 272 C-FDLLGSAFLWHQVRCMMANLFIVGQGLEPLTLINNLLDVEKNPQKPVYDMASDIPLIL 330
Query: 349 QSCDFDGLKFTCSLDAGHDLRLHLRNECQV---YQLQAAIFHEALLNCLPLAN 398
C FD +++ + R+ + YQL+AA+ N LP A+
Sbjct: 331 YDCKFDDMEWQLPDLSAEKAFKTTRSVDGIYLDYQLKAAV-STIFKNTLPRAD 382
>gi|448124451|ref|XP_004204922.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
gi|358249555|emb|CCE72621.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
Length = 432
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/276 (43%), Positives = 173/276 (62%), Gaps = 20/276 (7%)
Query: 89 HFKRYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLLVA-DKKESHYSRCG 145
H KR++A+K Y G + G F + PTVE EI KALEK +L+ A D SRCG
Sbjct: 72 HSKRFIAIKFAYLGWNYSGLSFQYEPTPLPTVEEEILKALEKAKLIPAVDPLSCDLSRCG 131
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTD+GVS++ QV+++ +RSN+ ++ S E+ Y+ +LN +LP DIRV
Sbjct: 132 RTDRGVSAMNQVMSLTVRSNLAPEEQDSTSNDGR--------ELPYLAILNSLLPPDIRV 183
Query: 206 IG--WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA- 262
P P DF+ARFSC+ R Y+YFF +L++ M A KK+ G HDFRNFCK+D +
Sbjct: 184 TAVCLHPPP-DFNARFSCLYRHYRYFFRPHDLDVELMSKAAKKYEGVHDFRNFCKIDGSK 242
Query: 263 NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322
+ NYKR + S ++ P ++L ++++G+AFLWHQVRCM AVLF++GQ ESIDV
Sbjct: 243 QITNYKREILSADVLPY-----NDELYMLELKGTAFLWHQVRCMAAVLFLVGQKHESIDV 297
Query: 323 IESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
I+ LL+ + P KP + MA +IPLVL C + +++
Sbjct: 298 IDELLNVDKYPSKPNFEMANDIPLVLFDCAYPSMEW 333
>gi|225718836|gb|ACO15264.1| tRNA pseudouridine synthase 3 [Caligus clemensi]
Length = 423
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/281 (45%), Positives = 169/281 (60%), Gaps = 20/281 (7%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCG 145
N + +R V L++ YFG ++GFA + T+E +F AL +T L+ ++ S+Y RCG
Sbjct: 54 FNLYKQRKVLLQICYFGWSYHGFAVQEDSPMTIEGHLFNALSRT-CLIRSRETSNYHRCG 112
Query: 146 RTDKGVSSVGQVIAIYLRSNI---------KECNTNNASMGETVQEEQIEDEIDYVRVLN 196
RTDKGVS+ QV++I LRSN+ EC ++ T +EIDY ++LN
Sbjct: 113 RTDKGVSAFRQVVSIELRSNLLEGPGVFDYPECRAHSRPNPTT------NEEIDYCKILN 166
Query: 197 RVLPKDIRVIGWSPAPT-DFSARFSCISREYKYFF-WRENLNLSAMESAGKKFVGEHDFR 254
LP DI+VI W+P DFSARF C REYKY F +LS ++ AG K +G HDFR
Sbjct: 167 SNLPPDIQVIAWAPLTNRDFSARFDCKIREYKYIFPLGAARDLSRIQEAGAKLLGSHDFR 226
Query: 255 NFCKMDAAN-VHNYKRHVTSFEISPC-YISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
NFCKMD +N V Y R + +SP S + L +KI G+AFLWHQ+RC+V VLF
Sbjct: 227 NFCKMDVSNGVLTYIRRMLEVSVSPLESSSTDSYSLVELKIVGNAFLWHQIRCIVTVLFH 286
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
IGQGLE +I+ LLD PR+PQY +A EIPL L C +
Sbjct: 287 IGQGLEEPSLIDELLDVEKHPRRPQYGLASEIPLNLFDCSY 327
>gi|400597275|gb|EJP65010.1| pseudouridine synthase 3 [Beauveria bassiana ARSEF 2860]
Length = 776
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/344 (40%), Positives = 190/344 (55%), Gaps = 65/344 (18%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGF--ASDGNMEPTVESEIFKALEKTRLL 132
K KVK KM + + R++ALK+ Y G+ + GF + GN +PT+E E++ AL K L+
Sbjct: 54 KPKVKRKMDPS--KYSTRFIALKLAYLGKNYGGFEFQAVGN-QPTIEEELWNALTKACLI 110
Query: 133 VADKKE------SHYSRCGRTDKGVSSVGQVIAIYLRSN------IKECNTNNASMGETV 180
+ ++ YS+CGRTD+GVS+ GQVI I +RSN K+ A+ +T
Sbjct: 111 FPEDEKIVDFNICEYSKCGRTDRGVSAFGQVIGIRVRSNKPLPKEAKQTVDGVATEDQTE 170
Query: 181 QEEQ---------IEDEIDYVRVLNRVLPKDIRVIGWSPAPT-DFSARFSCISREYKYFF 230
+EQ I DEI Y VLNR+LP +IR++ W P+P DFSARFSC R+Y+YFF
Sbjct: 171 GQEQEAKERPFDPIADEIPYPMVLNRLLPPEIRILAWCPSPPPDFSARFSCRERQYRYFF 230
Query: 231 WREN-----------------LNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKR--- 269
+ L+++AM A K+F GE DFRN CK+D A + N+ R
Sbjct: 231 TQPAFAPEPSDDGGGGAKSGWLDIAAMRDAAKRFEGEQDFRNVCKVDPAKLITNWSRTIF 290
Query: 270 ---------------HVTSFEISPCYISFEGN--QLCAIKIRGSAFLWHQVRCMVAVLFM 312
+VT SP ++ G ++ +RGSAFLWHQ+R MVAVLF+
Sbjct: 291 ESDIVEVQDAATALPYVTGAGFSPAHLEKGGKFPRVYYFHVRGSAFLWHQIRHMVAVLFL 350
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL 356
+GQGLE ++ LLD + PRKP Y MA E+PLVL C F L
Sbjct: 351 VGQGLEKPSIVTELLDVDKYPRKPGYAMADEVPLVLWDCVFPDL 394
>gi|367011433|ref|XP_003680217.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
gi|359747876|emb|CCE91006.1| hypothetical protein TDEL_0C01170 [Torulaspora delbrueckii]
Length = 437
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/279 (43%), Positives = 173/279 (62%), Gaps = 18/279 (6%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA-DKKESHYS 142
+ + +R++ALK Y G + G A + PTVE I +AL K +L+ + D + +S
Sbjct: 78 FSKYSRRFIALKFAYLGWNYNGLAVQKEPTPLPTVEGVIIEALNKCKLVPSLDPHDFRFS 137
Query: 143 RCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
RCGRTDKGVS++ QVI++++RSN+ E E + EI YV +LN++LP+D
Sbjct: 138 RCGRTDKGVSAMSQVISLFVRSNLSE--------EEQSDPKNDSKEIQYVNILNQLLPED 189
Query: 203 IRVIGWS-PAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDA 261
IRV S P F ARFSC R Y+Y F ++ L++ M+ A F GEHDFRNFCK+D
Sbjct: 190 IRVSAVSLRPPKGFDARFSCQYRHYRYLFHKDGLDVGRMDQAAALFKGEHDFRNFCKLDG 249
Query: 262 A-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
+ + NY R++ S +I P G+ C + GSAFLWHQVRCM+A LF++GQGLE++
Sbjct: 250 SKQITNYARNIISAKIIP----LSGDFYC-FDLIGSAFLWHQVRCMMANLFLVGQGLENV 304
Query: 321 DVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359
+I +LD + PRKP Y+MA +IPL+L C F +++
Sbjct: 305 SLISDMLDVDKTPRKPIYDMASDIPLILYDCKFPDIEWV 343
>gi|156844606|ref|XP_001645365.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
gi|156116026|gb|EDO17507.1| hypothetical protein Kpol_1058p44 [Vanderwaltozyma polyspora DSM
70294]
Length = 446
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 186/310 (60%), Gaps = 26/310 (8%)
Query: 58 TLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA--SDGNME 115
+ V + RK+ + KK K + + R++ALK Y G + G A +
Sbjct: 61 SYVGKKRKSANSDIGVESKKPKAAKKFDFSKYDTRFIALKFAYLGWNYNGLAIQKEPTPL 120
Query: 116 PTVESEIFKALEKTRLLVA-DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI---KECNT 171
PTVE I +A+ K RL+ + + ++ +SRCGRTDKGVS++ QVI++ +RSN+ ++ N+
Sbjct: 121 PTVEGVILEAMNKCRLVPSMNPQDYKFSRCGRTDKGVSAMSQVISLKVRSNLTPEEQANS 180
Query: 172 NNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYF 229
+N S EI YV +LN++LP DIRV + P P DF ARFSC R YKY
Sbjct: 181 DNDS-----------KEIQYVDILNQLLPDDIRVSAVCLRP-PKDFDARFSCKHRHYKYL 228
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F +E L+L ME A K + GE+DFRNFCK+D + + NYKR + IS + G+
Sbjct: 229 FNKEGLDLEKMEQAAKYYEGENDFRNFCKLDGSKQITNYKRTI----ISASIMHVSGDFY 284
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
C + GSAFLWHQVRCM+A LF++GQGLE +I+ +LD PRKP Y+MA ++PL+L
Sbjct: 285 C-FDLIGSAFLWHQVRCMMANLFLVGQGLEDHTLIKDMLDIEKTPRKPIYDMASDVPLIL 343
Query: 349 QSCDFDGLKF 358
C F+ +++
Sbjct: 344 YDCKFEDMEW 353
>gi|307212020|gb|EFN87913.1| tRNA pseudouridine synthase 3 [Harpegnathos saltator]
Length = 368
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 164/267 (61%), Gaps = 16/267 (5%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
KR++ LK+ Y G + GF + T+E +F AL K+ + ++ S+Y RCGRTDKG
Sbjct: 16 KRHILLKLYYLGWNYDGFTVQEDSNATIEHHLFAALTKS-CCIESRETSNYHRCGRTDKG 74
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
VSS QVI++ +RS + E Q+ + E+ Y ++LN++LP +IR I W P
Sbjct: 75 VSSFCQVISLDIRSKL-----------EPEQQSNLSKELPYCKILNKLLPTNIRCIAWCP 123
Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKR 269
+DFSARF C R+YKYFF R NL++ AM+ A K +GE DFRN CKMD AN V N+KR
Sbjct: 124 ISSDFSARFDCKYRKYKYFFPRGNLDIDAMDKAVKYVIGEFDFRNICKMDVANGVTNFKR 183
Query: 270 HVTSFEISPCYISFE---GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
V +IS + + G +C ++I AFLWHQ+RC++ +L ++G+ E ++I L
Sbjct: 184 KVIDAKISMNNQAVDKSTGYDICELEITSQAFLWHQIRCLMGILLLVGKKREEPEIISKL 243
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDF 353
LD P+KPQYNMA E+PL L D+
Sbjct: 244 LDIETCPQKPQYNMAHEVPLNLWYSDY 270
>gi|302789057|ref|XP_002976297.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii]
gi|300155927|gb|EFJ22557.1| hypothetical protein SELMODRAFT_105100 [Selaginella moellendorffii]
Length = 175
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 104/173 (60%), Positives = 127/173 (73%), Gaps = 5/173 (2%)
Query: 188 EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKF 247
EIDYV LNR LP DIRV+GW P P F ARFSC+ REYKYFF + LN+ AM+ A ++
Sbjct: 1 EIDYVSSLNRALPADIRVLGWCPVPPGFHARFSCLYREYKYFFIDDGLNIDAMKQASQRL 60
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
+GEHDFRNFCKMDA N+HNY R + +F+I P L + +RG+AFLWHQVRCM
Sbjct: 61 LGEHDFRNFCKMDADNIHNYTRQILAFDILPI-----EECLWVMHVRGNAFLWHQVRCMA 115
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTC 360
AVLFMIG+G E++ +I+ LLD + RKPQY MAPE+PLVLQSC F GL+F C
Sbjct: 116 AVLFMIGRGHETLTIIDDLLDVDKTMRKPQYVMAPELPLVLQSCAFQGLRFYC 168
>gi|367000836|ref|XP_003685153.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
gi|357523451|emb|CCE62719.1| hypothetical protein TPHA_0D00760 [Tetrapisispora phaffii CBS 4417]
Length = 434
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 187/314 (59%), Gaps = 26/314 (8%)
Query: 89 HFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA-DKKESHYSRCG 145
+ KR+VALK Y G + G A D PT+E + +A++K + + + + K+ +SRCG
Sbjct: 84 YHKRHVALKFCYLGWDYNGLALQKDKTPLPTIEGILLEAMKKCKFIPSMNPKDFKFSRCG 143
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTDKGVS++ Q+I++ +RS + +A+ EI+Y +LN++LP IR+
Sbjct: 144 RTDKGVSALNQIISLDMRSELPPAEQVDANFDHK--------EINYTAILNQILPPAIRI 195
Query: 206 IG--WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA- 262
+P P DF ARF+CISR YKYFF +NL+++ M A K F GE+DFRNFCK+D +
Sbjct: 196 TAVCLNP-PKDFDARFNCISRHYKYFFKLDNLDITLMREAAKHFEGENDFRNFCKLDGSK 254
Query: 263 NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322
+ NY+R + SF+IS + I SAFLWHQVR MVA+LF++GQ LE +
Sbjct: 255 QIKNYERTIFSFDISKV-----KEDIYCFDIIASAFLWHQVRYMVAILFLVGQKLEPSSI 309
Query: 323 IESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCS-LDAGHDLRLHLRNECQVYQL 381
++ LLD N PRKP Y+MA + PLVL C++ +K+ S ++ ++ E YQL
Sbjct: 310 VKDLLDVNKYPRKPIYDMAADFPLVLYDCNYSDMKWIKSNINDYKAIKFRKSLEAIDYQL 369
Query: 382 Q-----AAIFHEAL 390
Q A+IF E L
Sbjct: 370 QIKATIASIFLEEL 383
>gi|46138645|ref|XP_391013.1| hypothetical protein FG10837.1 [Gibberella zeae PH-1]
Length = 538
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 137/352 (38%), Positives = 187/352 (53%), Gaps = 68/352 (19%)
Query: 72 KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTR 130
K+ K KVK KM N + RY+ALK+ Y G+ + GF P++E E++ AL K
Sbjct: 43 KSTKPKVKRKMDP--NKYTTRYIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKAC 100
Query: 131 LLVADKKE------SHYSRCGRTDKGVSSVGQVIAIYLRS------------NIKECNTN 172
L+ + + YS+CGRTDKGVS+ GQVI + +RS E
Sbjct: 101 LIFPEDERIVDFDCCEYSKCGRTDKGVSAFGQVIGLRVRSARPVPKKRRRMSEAGEAMVV 160
Query: 173 NASMGETVQEE---------QIEDEIDYVRVLNRVLPKDIRVIGWSPAPT-DFSARFSCI 222
+ GE +EE I+DE+ Y R+LNRVLP DIR++ W P+P DFSARFSC
Sbjct: 161 DEQSGENAEEEVEDNTPPFDPIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCR 220
Query: 223 SREYKYFFWREN--------------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNY 267
R+Y+YFF + L++ AM A K++ G+HDFRNFCK+D + N+
Sbjct: 221 ERQYRYFFTQPAFTPEPSAGGARNGWLDIEAMRDAAKRYEGDHDFRNFCKIDPGKQITNF 280
Query: 268 KRHVTSFEI--------------SPCYISFEG--------NQLCAIKIRGSAFLWHQVRC 305
+R + +I SP + EG ++ K+RGSAFLWHQ+R
Sbjct: 281 ERTIYEADIEEVQDVSSALPYLSSPQFAPAEGLPTDDAKYPKVYCFKVRGSAFLWHQIRH 340
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLK 357
MVAVLF+ GQ LE+ DV+ ++LD P KP Y MA E+PLVL C F K
Sbjct: 341 MVAVLFLAGQRLETPDVVTTMLDVAKNPCKPNYVMADEVPLVLWDCIFPSEK 392
>gi|190346281|gb|EDK38328.2| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 183/316 (57%), Gaps = 25/316 (7%)
Query: 57 TTLVEENRKTESGGCKTGKK-KVKEKMSGTLNHHFKRYVALKVMYFGQRFYG--FASDGN 113
+T VE +K + KK K K SG H KR++AL+ Y G + G F ++
Sbjct: 38 STSVETTKKNHTSNEPPAKKPKRKFDFSG----HSKRFIALRFAYAGWNYNGLAFQNEPT 93
Query: 114 MEPTVESEIFKALEKTRLLV-ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTN 172
PTVE EI +AL K RL+ D ++SRCGRTDKGVS++ QVI++ +RS + E
Sbjct: 94 PLPTVEQEILEALTKARLITEPDPLVCNFSRCGRTDKGVSAMNQVISLEVRSGLTE---- 149
Query: 173 NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG--WSPAPTDFSARFSCISREYKYFF 230
+ Q + EI Y+ +LN +LP IR+ G +P P F ARFSC R Y+Y F
Sbjct: 150 ----EQRSQPGADQKEIPYITILNSLLPPSIRITGICLNPPP-GFDARFSCSYRHYRYIF 204
Query: 231 WRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLC 289
R +L+L AM A KK+ GEHDFRNFCK+D + + NY R + S I P +
Sbjct: 205 RRYDLDLEAMTEAAKKYEGEHDFRNFCKIDGSKQITNYGRTILSANIMPL-----KDDYY 259
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
++G+AFLWHQVRCM+ +LF++G+ LE +++ LL+ + P KP Y+MA ++PLVL
Sbjct: 260 VFDLKGTAFLWHQVRCMMGILFLVGRKLEKPSLVDELLNVDVNPNKPNYDMANDVPLVLY 319
Query: 350 SCDFDGLKFTCSLDAG 365
C F +++T + D
Sbjct: 320 DCVFPDIEWTAATDTA 335
>gi|146417456|ref|XP_001484697.1| hypothetical protein PGUG_02426 [Meyerozyma guilliermondii ATCC
6260]
Length = 431
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 128/316 (40%), Positives = 183/316 (57%), Gaps = 25/316 (7%)
Query: 57 TTLVEENRKTESGGCKTGKK-KVKEKMSGTLNHHFKRYVALKVMYFGQRFYG--FASDGN 113
+T VE +K + KK K K SG H KR++AL+ Y G + G F ++
Sbjct: 38 STSVETTKKNHTSNEPPAKKPKRKFDFSG----HSKRFIALRFAYAGWNYNGLAFQNEPT 93
Query: 114 MEPTVESEIFKALEKTRLLV-ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTN 172
PTVE EI +AL K RL+ D ++SRCGRTDKGVS++ QVI++ +RS + E
Sbjct: 94 PLPTVEQEILEALTKARLITEPDPLVCNFSRCGRTDKGVSAMNQVISLEVRSGLTE---- 149
Query: 173 NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG--WSPAPTDFSARFSCISREYKYFF 230
+ Q + EI Y+ +LN +LP IR+ G +P P F ARFSC R Y+Y F
Sbjct: 150 ----EQRSQPGADQKEIPYITILNSLLPPSIRITGICLNPPP-GFDARFSCSYRHYRYIF 204
Query: 231 WRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLC 289
R +L+L AM A KK+ GEHDFRNFCK+D + + NY R + S I P +
Sbjct: 205 RRYDLDLEAMTEAAKKYEGEHDFRNFCKIDGSKQITNYGRTILSANIMPL-----KDDYY 259
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
++G+AFLWHQVRCM+ +LF++G+ LE +++ LL+ + P KP Y+MA ++PLVL
Sbjct: 260 VFDLKGTAFLWHQVRCMMGILFLVGRKLEKPSLVDELLNVDVNPNKPNYDMANDVPLVLY 319
Query: 350 SCDFDGLKFTCSLDAG 365
C F +++T + D
Sbjct: 320 DCVFPDIEWTAATDTA 335
>gi|349577915|dbj|GAA23082.1| K7_Deg1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 442
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/372 (37%), Positives = 208/372 (55%), Gaps = 49/372 (13%)
Query: 60 VEENRK---TESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP 116
+E+N+K ++ ++ KK +K + H R++AL+ Y G + G A P
Sbjct: 59 IEDNKKRKISQEEVTRSKAKKAPKKFD--FSKHNTRFIALRFAYLGWNYNGLAVQKEYTP 116
Query: 117 --TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN 173
TVE I +A+ K +L+ + + + +SRCGRTDKGVS++ QVI++ +RSN+ +
Sbjct: 117 LPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSNL-----TD 171
Query: 174 ASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYFFW 231
G+ + + EI YV VLN++LP DIR+ + P P +F ARFSC+ R YKY F
Sbjct: 172 EEQGDPTNDSR---EIPYVHVLNQLLPDDIRISAVCLRPPP-NFDARFSCVHRHYKYIFN 227
Query: 232 RENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCA 290
+NLN+ M A FVGE DFRNFCK+D + + N+KR + S +I P +F L
Sbjct: 228 GKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDLI- 286
Query: 291 IKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQS 350
GSAFLWHQVRCM+A+LF++GQ LE +++ L D P++P Y MA +IPL+L
Sbjct: 287 ----GSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYD 342
Query: 351 C-------------DFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLA 397
C D+ +KFT + +A L LH Y+L+AA+ + + LP A
Sbjct: 343 CKFPEMDWQEPTVDDYKAIKFTTATEA---LTLH-------YELKAAVCN-IFKDVLPTA 391
Query: 398 NGLEIGSSLIHL 409
N ++I+L
Sbjct: 392 NTNNFSKTIINL 403
>gi|312378112|gb|EFR24771.1| hypothetical protein AND_10418 [Anopheles darlingi]
Length = 376
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 202/366 (55%), Gaps = 41/366 (11%)
Query: 12 LQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGC 71
LQ + L +++K+LEA N++L +C +V++N K ++
Sbjct: 18 LQLSKQELIDKIKQLEAHNSQL-------KC----------------IVQKNLKPDTK-- 52
Query: 72 KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL 131
K K ++ + + KR++ L+ Y G + GFA+ + T+E +F AL+K
Sbjct: 53 KENGKPSNKRRAFDFSKCHKRHILLRFFYLGWDYQGFAAQEDSIETIEHHLFTALQKV-C 111
Query: 132 LVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDY 191
L+ ++ S+Y+RCGRTDKGVS+ QVI+I +RS I A + + E+ + E+DY
Sbjct: 112 LIESRETSNYNRCGRTDKGVSAFHQVISIDVRSKI-------APEDDQLSEDSLATELDY 164
Query: 192 VRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
+LNRVLP++IR + W P +SARF C SR Y+YFF R NL + AM+ A + VG
Sbjct: 165 CGMLNRVLPEEIRCLAWMPMVNPGYSARFDCRSRTYRYFFPRGNLRIDAMQEACRHLVGA 224
Query: 251 HDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEG---NQLCAIKIRGSAFLWHQVRCM 306
HDFRN CKMD N V N+ R + I G + +++RG AFLWHQVRC+
Sbjct: 225 HDFRNLCKMDVGNGVVNFVRSIDECTIHASQTDSSGMGSYDMMYLQLRGKAFLWHQVRCI 284
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTC---SLD 363
+AVL ++G G E +++ LLD + P KPQY+MA ++PL L C F+ S+
Sbjct: 285 MAVLLLVGDGKEDPTIVKELLDVDRNPCKPQYSMASDVPLNLYDCQFNEKSSDTSGESVT 344
Query: 364 AGHDLR 369
G DLR
Sbjct: 345 EGSDLR 350
>gi|380477720|emb|CCF43995.1| tRNA pseudouridine synthase A [Colletotrichum higginsianum]
Length = 482
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/346 (40%), Positives = 189/346 (54%), Gaps = 85/346 (24%)
Query: 87 NHHFKRYVALKVMYFGQRFYGF--ASDGNMEPTVESEIFKALEKTRLLVADKKES----- 139
+ + R++ALK Y G+R+ GF AS ++ PT+E E++ AL K L+ + E
Sbjct: 4 SRYSSRFIALKFAYLGKRYGGFEYASSASL-PTIEGELWNALTKACLIFPEDPEVVNFDC 62
Query: 140 -HYSRCGRTDKGVSSVGQVIAIYLRSN-----------IKECNTNNASMGETVQEE---- 183
YS+CGRTD+GVS+ GQVIA+ +RS+ I E + A G + E
Sbjct: 63 CEYSKCGRTDRGVSAFGQVIALRVRSSKPLPKKPEEQAIPETEGDTAMEGTVEKAEGEED 122
Query: 184 ---------QIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD-FSARFSCISREYKYFF--- 230
IEDEI YV+VLNR+LP DIRVI W PAP FSARFSC R+Y+YFF
Sbjct: 123 NKKPEKEWDDIEDEIPYVKVLNRLLPDDIRVIAWCPAPPPGFSARFSCEERQYRYFFTQP 182
Query: 231 -----------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVT 272
RE L++ AM A ++FVG+HDFRNFCK+D + + +T
Sbjct: 183 AFTPTAVTATDGAPPDGLREGYLDIEAMNEAARRFVGDHDFRNFCKVDGS------KQIT 236
Query: 273 SFE----------------ISPCYI---SFEGN----QLCAIKIRGSAFLWHQVRCMVAV 309
SFE + P Y+ + +GN ++ + IRG+AFLWHQ+R MV +
Sbjct: 237 SFERRMYEAGVEEXQDVGSVLP-YLGRDAADGNDKLPRVYSFNIRGTAFLWHQIRHMVTI 295
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355
LF++GQ LE DVI LLD PRKP Y++A E PLVL +C F G
Sbjct: 296 LFLVGQRLEGPDVITRLLDVEKTPRKPNYDLAHETPLVLWNCVFPG 341
>gi|365983330|ref|XP_003668498.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
gi|343767265|emb|CCD23255.1| hypothetical protein NDAI_0B02200 [Naumovozyma dairenensis CBS 421]
Length = 439
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/362 (38%), Positives = 203/362 (56%), Gaps = 49/362 (13%)
Query: 55 DGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA--SDG 112
+G ++ + RK + KKK + H R++ALK Y G + G A +
Sbjct: 50 EGLSIPHKKRKVDISTVTKKKKK-----EFDFSKHNSRFIALKFAYLGWNYNGLAMQKEA 104
Query: 113 NMEPTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNT 171
PTVE +I +A+ ++L+ + +E +SRCGRTDKGVS++ QVI++ +RSN+ +
Sbjct: 105 TPLPTVEGKIIEAMYTSKLVPSMVPQEYSFSRCGRTDKGVSAMSQVISLKVRSNLTD--- 161
Query: 172 NNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYF 229
E + E EI YV +LN++LP DIRV + P P F ARFSC SR YKY
Sbjct: 162 -----EEQKRPENDPREIRYVHILNQLLPDDIRVSAVCLRP-PEGFDARFSCDSRHYKYL 215
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F + L++S M+ A K+ G+HDFRNFCK+D + + N++R + S +I + EGN
Sbjct: 216 FEADGLDISKMKEASSKYEGDHDFRNFCKLDGSKQITNHRRTIISAKI----LHVEGNIY 271
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
C + G AFLWHQVRCM+A L ++GQGLE + +IE +LD P+KP Y+MA ++PL+L
Sbjct: 272 C-FDLVGRAFLWHQVRCMMANLLLVGQGLEEVSLIEDMLDIEKTPQKPIYDMADDLPLLL 330
Query: 349 QSCDF-------------DGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLP 395
C F D +K+ +++A L LH YQL+A I + N LP
Sbjct: 331 YDCKFPEMEWIESNLNNYDAVKYGKAVNA---LALH-------YQLKATIVN-IFKNTLP 379
Query: 396 LA 397
A
Sbjct: 380 TA 381
>gi|340378747|ref|XP_003387889.1| PREDICTED: tRNA pseudouridine synthase 3-like [Amphimedon
queenslandica]
Length = 434
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 121/328 (36%), Positives = 188/328 (57%), Gaps = 11/328 (3%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
KR+VA KV+Y G + G A T+E+++F AL KT+L + D +S+YSRCGRTDKG
Sbjct: 54 KRHVAFKVLYLGWDYSGLALQDTTTETIEAKLFDALLKTKL-IEDPSQSNYSRCGRTDKG 112
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED--EIDYVRVLNRVLPKDIRVIGW 208
VS+ GQVI + +R+ + E G E + + E+ Y+ +LNRVLPKDI++ W
Sbjct: 113 VSAFGQVITLDVRTALLEGEGVIVPEGSKAIERKGDKIIELPYLNMLNRVLPKDIKLSAW 172
Query: 209 SPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHN-- 266
+P P FSARF+ + R YKY+F ++++ M +KF+G HDFRNFCK D ++
Sbjct: 173 APVPPQFSARFNTMHRIYKYYFPMGSMDIELMREGARKFIGHHDFRNFCKYDTNDLATQS 232
Query: 267 --YKRHVTSFEISPCYIS---FEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESID 321
+ R + +I P + +QL A + G AFL HQ+RCM+++LF++G LE
Sbjct: 233 IKFDRTILDIKIEPLDQNSSVVSSHQLYACTVTGLAFLRHQIRCMMSLLFLVGHKLEQPS 292
Query: 322 VIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQL 381
+I+ +LD + P KPQY MA + PLVL C F +++ LD + + + Y +
Sbjct: 293 IIDYMLDISQCPGKPQYGMAADFPLVLHDCVFQDIEWQY-LDYSYVNVISELQKAWTYHM 351
Query: 382 QAAIFHEALLNCLPLANGLEIGSSLIHL 409
A+ +++++ L + SL+ L
Sbjct: 352 TQAMIVKSMIDQLEGIDTSSFSPSLLPL 379
>gi|398409422|ref|XP_003856176.1| hypothetical protein MYCGRDRAFT_89199 [Zymoseptoria tritici IPO323]
gi|339476061|gb|EGP91152.1| hypothetical protein MYCGRDRAFT_89199 [Zymoseptoria tritici IPO323]
Length = 534
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 186/353 (52%), Gaps = 61/353 (17%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRL 131
KK K + + R +ALK Y G + G+ N PT+E E+++AL K RL
Sbjct: 43 KKPRKAPKPFDPSRYNTRLIALKFAYLGGAYNGYEHHTNNTTPLPTIEEELWRALRKVRL 102
Query: 132 LVA----DKKES-------HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETV 180
+ +K E YS+CGRTD+GVS+ GQV+ I +RSN + + +A E
Sbjct: 103 IFPAFKPEKSEDDVEWEGCEYSKCGRTDRGVSAFGQVVGIRVRSNRPKPSPRSAENAEVE 162
Query: 181 QE--------------------EQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARF 219
+E + + DE+ Y+++LNRVLP DIR++ W P P+DFSARF
Sbjct: 163 EETAADAAKQDSTPDDTLEKPFDPVADELPYIQLLNRVLPSDIRILAWCPTPPSDFSARF 222
Query: 220 SCISREYKYFF----------------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
+C R Y+YFF W L++SAM+ A K+ G HDFRNFC
Sbjct: 223 NCKERRYRYFFTNPAYMPLPGSSASKRRGAEDGW---LDISAMQQAAAKYEGLHDFRNFC 279
Query: 258 KMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
K+DA+ + N++R + I + EG +L ++RGSAFLWHQVR +VAV+F++GQG
Sbjct: 280 KVDASKQIGNFERRIFHAGIHKVEGTGEGPELYWFEVRGSAFLWHQVRHLVAVVFLVGQG 339
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
E V++ LLD P KP Y MA ++PLVL C F + + D G R
Sbjct: 340 YEDPSVVDYLLDVEKTPGKPAYEMASDVPLVLWDCIFPNAEALANGDHGSGER 392
>gi|259146190|emb|CAY79449.1| Deg1p [Saccharomyces cerevisiae EC1118]
Length = 442
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 208/374 (55%), Gaps = 53/374 (14%)
Query: 60 VEENRK---TESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP 116
+E+N+K ++ ++ KK +K + H R++AL+ Y G + G A P
Sbjct: 59 IEDNKKRKISQEEVTRSKAKKAPKKFD--FSKHNTRFIALRFAYLGWNYNGLAVQKEFTP 116
Query: 117 --TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN 173
TVE I +A+ K +L+ + +++ +SRCGRTDKGVS++ QVI++ +RSN
Sbjct: 117 LPTVEGTILEAMNKCKLVPSMVLQNYKFSRCGRTDKGVSAMNQVISLEVRSN-------- 168
Query: 174 ASMGETVQEEQIED--EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYF 229
+ + Q + D EI YV VLN++LP DIR+ + P P +F ARFSC+ R YKY
Sbjct: 169 --LTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPP-NFDARFSCVHRHYKYI 225
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F +NLN+ M A FVGE DFRNFCK+D + + N+KR + S +I P +F L
Sbjct: 226 FNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDL 285
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
GSAFLWHQVRCM+A+LF++GQ LE +++ L D P++P Y MA +IPL+L
Sbjct: 286 I-----GSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLL 340
Query: 349 QSC-------------DFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLP 395
C D+ +KFT + +A L LH Y+L+AA+ + + LP
Sbjct: 341 YDCKFPEMDWQEPTVDDYKAIKFTTATEA---LTLH-------YELKAAVCN-IFKDVLP 389
Query: 396 LANGLEIGSSLIHL 409
AN ++I+L
Sbjct: 390 TANTNNFSKTIINL 403
>gi|323337774|gb|EGA79017.1| Deg1p [Saccharomyces cerevisiae Vin13]
gi|365765842|gb|EHN07347.1| Deg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 442
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 207/374 (55%), Gaps = 53/374 (14%)
Query: 60 VEENRK---TESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP 116
+E+N+K ++ ++ KK +K + H R++AL+ Y G + G A P
Sbjct: 59 IEDNKKRKISQEEVTRSKAKKAPKKFD--FSKHNTRFIALRFAYLGWNYNGLAVQKEFTP 116
Query: 117 --TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN 173
TVE I +A+ K +L+ + + + +SRCGRTDKGVS++ QVI++ +RSN
Sbjct: 117 LPTVEGTILEAMNKCKLVPSMVLQBYKFSRCGRTDKGVSAMNQVISLEVRSN-------- 168
Query: 174 ASMGETVQEEQIED--EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYF 229
+ + Q + D EI YV VLN++LP DIR+ + P P +F ARFSC+ R YKY
Sbjct: 169 --LTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPP-NFDARFSCVHRHYKYI 225
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F +NLN+ M A FVGE DFRNFCK+D + + N+KR + S +I P +F L
Sbjct: 226 FNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDL 285
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
GSAFLWHQVRCM+A+LF++GQ LE +++ L D P++P Y MA +IPL+L
Sbjct: 286 I-----GSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLL 340
Query: 349 QSC-------------DFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLP 395
C D+ +KFT + +A L LH Y+L+AA+ + + LP
Sbjct: 341 YDCKFPEMDWQEPTVDDYKAIKFTTATEA---LTLH-------YELKAAVCN-IFKDVLP 389
Query: 396 LANGLEIGSSLIHL 409
AN ++I+L
Sbjct: 390 TANTNNFSKTIINL 403
>gi|363755522|ref|XP_003647976.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892012|gb|AET41159.1| hypothetical protein Ecym_7325 [Eremothecium cymbalariae
DBVPG#7215]
Length = 431
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 192/322 (59%), Gaps = 34/322 (10%)
Query: 43 EKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFG 102
+++EDK H V KTE G K GK+K + + + R++ALK Y G
Sbjct: 47 DEVEDKKHKRV-----------KTE-GVAKKGKRKQYREFD--FSKYNTRFIALKFAYLG 92
Query: 103 QRFYGFA--SDGNMEPTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVSSVGQVIA 159
+ G A + PTVE I +A+ K +L+ + ++ ++SRCGRTDKGVS++ QVI+
Sbjct: 93 WNYNGLAIQKEPTPLPTVEGTILEAMSKCKLVPSMVPQDYNFSRCGRTDKGVSAMNQVIS 152
Query: 160 IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--IGWSPAPTDFSA 217
+ +RSN+ + E + EI YV +LN++LP DIRV + P P F A
Sbjct: 153 LSVRSNL--------TAEEQLDPANDSKEIPYVHILNQLLPDDIRVSAVCLRP-PEGFDA 203
Query: 218 RFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI 276
RFSC R YKY F +++LN+ M+ A K ++GEHDFRNFCK+D + + NYKR + S +I
Sbjct: 204 RFSCKYRHYKYLFKKDSLNIDLMQEAAKMYIGEHDFRNFCKLDGSKQITNYKRVILSSQI 263
Query: 277 SPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKP 336
+ +G+ C + GSAFLWHQVRCM+A LF+IGQ LE I +I +LL + P+KP
Sbjct: 264 ----LHIDGDMYC-FDLIGSAFLWHQVRCMMANLFLIGQELEDISLISNLLSPSKYPQKP 318
Query: 337 QYNMAPEIPLVLQSCDFDGLKF 358
Y +A +IPL+L C F+ +++
Sbjct: 319 IYELASDIPLILYDCKFENIEW 340
>gi|158298322|ref|XP_318500.4| AGAP010807-PA [Anopheles gambiae str. PEST]
gi|157014345|gb|EAA13705.4| AGAP010807-PA [Anopheles gambiae str. PEST]
Length = 485
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 194/347 (55%), Gaps = 46/347 (13%)
Query: 17 EALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKK 76
E L +R+K+LEA N +L S +V++N +S T K
Sbjct: 24 EELIDRIKQLEAHNTQLKS-----------------------IVQKN--LQSRDETTNGK 58
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK 136
K+ FKR++ L+ Y G + GFA+ + T+E +F AL+K L+ +
Sbjct: 59 AKKKHRPFDFAKCFKRHILLRFYYLGWDYQGFAAQEDSIETIEHHMFAALKKV-CLIESR 117
Query: 137 KESHYSRCGRTDKGVSSVGQVIAIYLRSNIK---ECNTNNASMGETVQEEQIEDEIDYVR 193
+ S+Y+RCGRTDKGVS+ QVI++ +RS + + NN + +E+DY
Sbjct: 118 ETSNYNRCGRTDKGVSAFHQVISLDVRSKFAPELQLDANN-----------LTNELDYCA 166
Query: 194 VLNRVLPKDIRVIGWSPAPTD-FSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LNRVLP++IR + W P +SARF C SR Y+YFF R +LN++AME + + VG HD
Sbjct: 167 MLNRVLPEEIRCLAWMPMVNPAYSARFDCRSRTYRYFFPRGDLNITAMEESARYLVGAHD 226
Query: 253 FRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGN----QLCAIKIRGSAFLWHQVRCMV 307
FRN CKMD N V ++ R + + I P E + + ++++G AFLWHQVRC++
Sbjct: 227 FRNLCKMDVGNGVVSFVRSIDAISIKPSQRDSERDGSSYDMMYLELQGKAFLWHQVRCIM 286
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
AVL ++GQG E V++ LLD P KPQY+MA ++PL L C F+
Sbjct: 287 AVLLLVGQGREKPSVVKDLLDVEQNPCKPQYSMASDVPLNLYDCQFN 333
>gi|323305104|gb|EGA58854.1| Deg1p [Saccharomyces cerevisiae FostersB]
Length = 431
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 207/374 (55%), Gaps = 53/374 (14%)
Query: 60 VEENRK---TESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP 116
+E+N+K ++ ++ KK +K + H R++AL+ Y G + G A P
Sbjct: 48 IEDNKKRKISQEEVTRSKAKKAPKKFD--FSKHNTRFIALRFAYLGWNYNGLAVQKEFTP 105
Query: 117 --TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN 173
TVE I +A+ K +L+ + + + +SRCGRTDKGVS++ QVI++ +RSN
Sbjct: 106 LPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSN-------- 157
Query: 174 ASMGETVQEEQIED--EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYF 229
+ + Q + D EI YV VLN++LP DIR+ + P P +F ARFSC+ R YKY
Sbjct: 158 --LTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPP-NFDARFSCVHRHYKYI 214
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F +NLN+ M A FVGE DFRNFCK+D + + N+KR + S +I P +F L
Sbjct: 215 FNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDL 274
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
GSAFLWHQVRCM+A+LF++GQ LE +++ L D P++P Y MA +IPL+L
Sbjct: 275 I-----GSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLL 329
Query: 349 QSC-------------DFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLP 395
C D+ +KFT + +A L LH Y+L+AA+ + + LP
Sbjct: 330 YDCKFPEMDWQEPTVDDYKAIKFTTATEA---LTLH-------YELKAAVCN-IFKDVLP 378
Query: 396 LANGLEIGSSLIHL 409
AN ++I+L
Sbjct: 379 TANTNNFSKTIINL 392
>gi|190406572|gb|EDV09839.1| tRNA pseudouridine synthase 3 [Saccharomyces cerevisiae RM11-1a]
gi|256268860|gb|EEU04212.1| Deg1p [Saccharomyces cerevisiae JAY291]
gi|323309245|gb|EGA62466.1| Deg1p [Saccharomyces cerevisiae FostersO]
Length = 442
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 207/374 (55%), Gaps = 53/374 (14%)
Query: 60 VEENRK---TESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP 116
+E+N+K ++ ++ KK +K + H R++AL+ Y G + G A P
Sbjct: 59 IEDNKKRKISQEEVTRSKAKKAPKKFD--FSKHNTRFIALRFAYLGWNYNGLAVQKEFTP 116
Query: 117 --TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN 173
TVE I +A+ K +L+ + + + +SRCGRTDKGVS++ QVI++ +RSN
Sbjct: 117 LPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSN-------- 168
Query: 174 ASMGETVQEEQIED--EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYF 229
+ + Q + D EI YV VLN++LP DIR+ + P P +F ARFSC+ R YKY
Sbjct: 169 --LTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPP-NFDARFSCVHRHYKYI 225
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F +NLN+ M A FVGE DFRNFCK+D + + N+KR + S +I P +F L
Sbjct: 226 FNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDL 285
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
GSAFLWHQVRCM+A+LF++GQ LE +++ L D P++P Y MA +IPL+L
Sbjct: 286 I-----GSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLL 340
Query: 349 QSC-------------DFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLP 395
C D+ +KFT + +A L LH Y+L+AA+ + + LP
Sbjct: 341 YDCKFPEMDWQEPTVDDYKAIKFTTATEA---LTLH-------YELKAAVCN-IFKDVLP 389
Query: 396 LANGLEIGSSLIHL 409
AN ++I+L
Sbjct: 390 TANTNNFSKTIINL 403
>gi|448122103|ref|XP_004204367.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
gi|358349906|emb|CCE73185.1| Piso0_000208 [Millerozyma farinosa CBS 7064]
Length = 430
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 181/304 (59%), Gaps = 20/304 (6%)
Query: 61 EENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYG--FASDGNMEPTV 118
E+ ++ ES K H KR++A+K Y G + G F + PTV
Sbjct: 42 EQPQEIESEPKAVSSKPENRPKQFDFGKHSKRFIAIKFAYLGWNYSGLSFQYEPAPLPTV 101
Query: 119 ESEIFKALEKTRLLVA-DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMG 177
E EI KALEK +++ A D SRCGRTD+GVS++ QV+++ +RSN+ ++ S
Sbjct: 102 EEEILKALEKAKIIPAVDPLCCDLSRCGRTDRGVSAMNQVMSLTVRSNLAPEEQDSTSND 161
Query: 178 ETVQEEQIEDEIDYVRVLNRVLPKDIRVIG--WSPAPTDFSARFSCISREYKYFFWRENL 235
E+ Y+ +LN +LP DIRV P P +F+ARFSC+ R+Y+YFF +L
Sbjct: 162 GR--------ELPYLAILNSLLPPDIRVTAVCLHPPP-NFNARFSCLYRQYRYFFRPHDL 212
Query: 236 NLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIR 294
++ M A KK+ G HDFR+FCK+D + + NYKR + S ++ P ++L ++++
Sbjct: 213 DVELMSKAAKKYEGVHDFRSFCKIDGSKQITNYKREILSADVLPY-----DDELYMLELK 267
Query: 295 GSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G+AFLWHQVRCM AVLF++GQ ESIDVI+ LL+ + P KP Y MA +IPLVL C +
Sbjct: 268 GTAFLWHQVRCMAAVLFLVGQKHESIDVIDELLNVDKYPSKPNYEMANDIPLVLFDCVYP 327
Query: 355 GLKF 358
+++
Sbjct: 328 SMEW 331
>gi|392299670|gb|EIW10763.1| Deg1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 442
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 207/374 (55%), Gaps = 53/374 (14%)
Query: 60 VEENRK---TESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP 116
+E+N+K ++ ++ KK +K + H R++AL+ Y G + G A P
Sbjct: 59 IEDNKKRKISQEEVTRSKAKKAPKKFD--FSKHNTRFIALRFAYLGWNYNGLAVQKEFTP 116
Query: 117 --TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN 173
TVE I +A+ K +L+ + + + +SRCGRTDKGVS++ QVI++ +RSN
Sbjct: 117 LPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSN-------- 168
Query: 174 ASMGETVQEEQIED--EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYF 229
+ + Q + D EI YV VLN++LP DIR+ + P P +F ARFSC+ R YKY
Sbjct: 169 --LTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPP-NFDARFSCVHRHYKYI 225
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F +NLN+ M A FVGE DFRNFCK+D + + N+KR + S +I P +F L
Sbjct: 226 FNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDL 285
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
GSAFLWHQVRCM+A+LF++GQ LE +++ L D P++P Y MA +IPL+L
Sbjct: 286 I-----GSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLL 340
Query: 349 QSC-------------DFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLP 395
C D+ +KFT + +A L LH Y+L+AA+ + + LP
Sbjct: 341 YDCKFPEMDWQEPSVDDYKAIKFTTATEA---LTLH-------YELKAAVCN-IFKDVLP 389
Query: 396 LANGLEIGSSLIHL 409
AN ++I+L
Sbjct: 390 TANTNNFSKTIINL 403
>gi|448515468|ref|XP_003867346.1| Deg1 protein [Candida orthopsilosis Co 90-125]
gi|380351685|emb|CCG21908.1| Deg1 protein [Candida orthopsilosis]
Length = 468
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 125/317 (39%), Positives = 180/317 (56%), Gaps = 23/317 (7%)
Query: 51 DGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGT----LNHHFKRYVALKVMYFGQRFY 106
D + + L ++ T S C K ++++K + H R++AL+ Y G +
Sbjct: 64 DLIAKISELEQKTAPTTSPTCTAPKPEIRQKSKKQKQFDWSRHNFRFIALRFAYLGWNYN 123
Query: 107 GFAS--DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRS 164
G A + PTVE I K L K +L+ + +SRCGRTDKGVS++ QV++I LRS
Sbjct: 124 GLAYQFEPTPLPTVEETILKTLSKIKLIPEPIDQVDFSRCGRTDKGVSAMNQVVSIKLRS 183
Query: 165 NIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCI 222
N+ S E + EIDY+ ++N LP DI+V I P P DF ARFSC
Sbjct: 184 NL--------SPEEQQDSTNDDKEIDYLTIINANLPSDIKVHSICLHPPP-DFDARFSCK 234
Query: 223 SREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYI 281
+R Y+Y F NL++ AM A + G+HDFRNFCK+D + + N++R + S +I I
Sbjct: 235 NRHYRYLFKASNLDIEAMNKAAGYYQGQHDFRNFCKLDGSKQITNFERFIYSSKI----I 290
Query: 282 SFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMA 341
E + C + G+AFLWHQVRCMVA+LF++GQ LE +++ L+D P KPQY MA
Sbjct: 291 HLENDLFC-FDLIGTAFLWHQVRCMVAILFLVGQHLEKPEIVTDLMDITKYPTKPQYEMA 349
Query: 342 PEIPLVLQSCDFDGLKF 358
+IPLVL C+F + +
Sbjct: 350 NDIPLVLYDCEFPPMDW 366
>gi|50309181|ref|XP_454596.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643731|emb|CAG99683.1| KLLA0E14345p [Kluyveromyces lactis]
Length = 444
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 184/314 (58%), Gaps = 24/314 (7%)
Query: 55 DGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRY----VALKVMYFGQRFYGFA- 109
+ T+ E +++ + ++K +K + F +Y VA K Y G + G A
Sbjct: 55 NSDTVAEVKKRSADAAVEAERRKNVKKPRKSREFDFSKYNTRFVAFKFAYLGWNYNGLAI 114
Query: 110 -SDGNMEPTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVSSVGQVIAIYLRSNIK 167
D PTVE I + + K +L+ + +E +SRCGRTD+GVS++ QVI++ +RSN+
Sbjct: 115 QKDATPLPTVEGTILETMNKCKLVPSMVPQEYKFSRCGRTDRGVSAMNQVISLRVRSNL- 173
Query: 168 ECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISRE 225
+ E + + EI YV +LN++LP+DIRV + P P F ARFSC SR
Sbjct: 174 -------TAEEQLDPSYDDKEIQYVNILNQILPEDIRVSAVCLRP-PKGFDARFSCKSRH 225
Query: 226 YKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFE 284
YKY F E L+L M+ A K + GEHDFRNFCK+D + + NYKR + S I ++S
Sbjct: 226 YKYLFSSEGLDLERMQLAAKHYEGEHDFRNFCKLDGSKQITNYKRTIKSSNI--MHVS-- 281
Query: 285 GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEI 344
+ + GSAFLWHQVRCMVA LF++GQGLE ++I+ +LD +PRKP Y MA +I
Sbjct: 282 -EDMYCFDLVGSAFLWHQVRCMVANLFLVGQGLEDPNLIKEMLDIEKMPRKPIYEMASDI 340
Query: 345 PLVLQSCDFDGLKF 358
PL+L C+F +++
Sbjct: 341 PLILYECEFSPMEW 354
>gi|14318522|ref|NP_116655.1| pseudouridine synthase DEG1 [Saccharomyces cerevisiae S288c]
gi|399356|sp|P31115.1|PUS3_YEAST RecName: Full=tRNA pseudouridine(38/39) synthase; AltName:
Full=Depressed growth-rate protein DEG1; AltName:
Full=tRNA pseudouridine synthase 3; AltName: Full=tRNA
pseudouridylate synthase 3; AltName: Full=tRNA-uridine
isomerase 3
gi|836755|dbj|BAA09239.1| depressed growth-rate protein [Saccharomyces cerevisiae]
gi|51013845|gb|AAT93216.1| YFL001W [Saccharomyces cerevisiae]
gi|285811895|tpg|DAA12440.1| TPA: pseudouridine synthase DEG1 [Saccharomyces cerevisiae S288c]
Length = 442
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 207/374 (55%), Gaps = 53/374 (14%)
Query: 60 VEENRK---TESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP 116
+E+N+K ++ ++ KK +K + H R++AL+ Y G + G A P
Sbjct: 59 IEDNKKRKISQEEVTRSKAKKAPKKFD--FSKHNTRFIALRFAYLGWNYNGLAVQKEYTP 116
Query: 117 --TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN 173
TVE I +A+ K +L+ + + + +SRCGRTDKGVS++ QVI++ +RSN
Sbjct: 117 LPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSN-------- 168
Query: 174 ASMGETVQEEQIED--EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYF 229
+ + Q + D EI YV VLN++LP DIR+ + P P +F ARFSC+ R YKY
Sbjct: 169 --LTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPP-NFDARFSCVHRHYKYI 225
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F +NLN+ M A FVGE DFRNFCK+D + + N+KR + S +I P +F L
Sbjct: 226 FNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDL 285
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
GSAFLWHQVRCM+A+LF++GQ LE +++ L D P++P Y MA +IPL+L
Sbjct: 286 V-----GSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLL 340
Query: 349 QSC-------------DFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLP 395
C D+ +KFT + +A L LH Y+L+AA+ + + LP
Sbjct: 341 YDCKFPEMDWQEPTVDDYKAIKFTTATEA---LTLH-------YELKAAVCN-IFKDVLP 389
Query: 396 LANGLEIGSSLIHL 409
AN ++I+L
Sbjct: 390 TANTNNFSKTIINL 403
>gi|151940762|gb|EDN59149.1| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789]
Length = 442
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 207/374 (55%), Gaps = 53/374 (14%)
Query: 60 VEENRK---TESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP 116
+E+N+K ++ ++ KK +K + H R++AL+ Y G + G A P
Sbjct: 59 IEDNKKRKISQEEVTRSKAKKAPKKFD--FSKHNTRFIALRFAYLGWNYNGLAVQKEYTP 116
Query: 117 --TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN 173
TVE I +A+ K +L+ + + + +SRCGRTDKGVS++ QVI++ +RSN
Sbjct: 117 LPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSN-------- 168
Query: 174 ASMGETVQEEQIED--EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYF 229
+ + Q + D EI YV VLN++LP DIR+ + P P +F ARFSC+ R YKY
Sbjct: 169 --LTDEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPP-NFDARFSCVHRHYKYI 225
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F +NLN+ M A FVGE DFRNFCK+D + + N+KR + S +I P +F L
Sbjct: 226 FNGKNLNIEKMSKAASYFVGERDFRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDL 285
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
GSAFLWHQVRCM+A+LF++GQ LE +++ L D P++P Y MA +IPL+L
Sbjct: 286 I-----GSAFLWHQVRCMMAILFLVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLL 340
Query: 349 QSC-------------DFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLP 395
C D+ +KFT + +A L LH Y+L+AA+ + + LP
Sbjct: 341 YDCKFPEMDWQEPTVDDYKAIKFTTATEA---LTLH-------YELKAAVCN-IFKDVLP 389
Query: 396 LANGLEIGSSLIHL 409
AN ++I+L
Sbjct: 390 TANTNNFSKTIINL 403
>gi|397630300|gb|EJK69716.1| hypothetical protein THAOC_09000 [Thalassiosira oceanica]
Length = 617
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 180/383 (46%), Gaps = 98/383 (25%)
Query: 70 GCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALE 127
G +KK +++ S H R+VALK Y G +F GFA + E ++E +F ALE
Sbjct: 62 GTNPSRKKTRKEASPP-GVHRTRHVALKFSYDGSQFTGFAENVGTEGDNSIEKALFTALE 120
Query: 128 KTRLLVAD---------KKESH--------------------YSRCGRTDKGVSSVGQVI 158
KTRLLV+ K+ SH YSRCGRTDKGV + GQVI
Sbjct: 121 KTRLLVSPEENGAFVLRKQSSHQEDESEEGHGNAISARTAAQYSRCGRTDKGVHAHGQVI 180
Query: 159 AIYLRSNIKECNTNNASMGETVQEEQIED------------------------------- 187
A+YL+S + A MG Q ED
Sbjct: 181 AMYLKSAFP-LSAKAAIMGSDDSRSQGEDLHDGSLPNNSLDKLECFVLPRRKKQGNAQVQ 239
Query: 188 ----------EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNL 237
E DY +VLN VLP IRVIGW P FSARFSC R Y+YFF R +LNL
Sbjct: 240 LPAHELRTISEYDYAKVLNNVLPSSIRVIGWCPVSPKFSARFSCSRRTYRYFFPRRDLNL 299
Query: 238 SAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQ---------- 287
A+ K +G HDFRN CKM+ V+N++R +TS ++ F Q
Sbjct: 300 DALAQGLKYMIGRHDFRNLCKMNCEQVYNFERVITSGDVVSPQKKFTLTQDPADSTVQLG 359
Query: 288 --------------LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
+C ++I G AFLWHQ+RC++++LF++G+ LE ++ LLD P
Sbjct: 360 ARKLESAAKESPHDICHVQIEGQAFLWHQIRCIMSILFLVGRELERPSIVRDLLDVKANP 419
Query: 334 RKPQYNMAPEIPLVLQSCDFDGL 356
KP Y+MA E LVL C F L
Sbjct: 420 AKPAYDMASETALVLHDCKFTRL 442
>gi|367054792|ref|XP_003657774.1| hypothetical protein THITE_75432 [Thielavia terrestris NRRL 8126]
gi|347005040|gb|AEO71438.1| hypothetical protein THITE_75432 [Thielavia terrestris NRRL 8126]
Length = 614
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 180/347 (51%), Gaps = 82/347 (23%)
Query: 87 NHHFKRYVALKVMYFGQRFYGFA-SDGNMEPTVESEIFKALEKTRLLVADKKES------ 139
+ + R VALK+ Y G+R+ GF G+ PTVE E+++AL +T L+ ++ +
Sbjct: 95 SKYATRLVALKLAYLGRRYGGFEHQPGSAVPTVEEELWRALVRTCLIWPEQPDKVDFGPW 154
Query: 140 HYSRCGRTDKGVSSVGQVIAIYLRSN--------------IKECNTNNASMGETVQE--- 182
YS+CGRTD+GVS+ GQVIAI LRSN KE + MGE +
Sbjct: 155 EYSKCGRTDRGVSAFGQVIAIRLRSNRPLDAAGKKGGDDKGKEGEAGDVEMGERGEAGEM 214
Query: 183 ------------EQIEDEIDYVRVLNRVLPKDIRVIGWSPA-PTDFSARFSCISREYKYF 229
+ I DEI+Y RVLNR+LP DIRV+ W+P P FSARFSC R+Y+YF
Sbjct: 215 AGAADGGAKPAWDPIADEINYPRVLNRLLPPDIRVLAWAPTLPPGFSARFSCWERQYRYF 274
Query: 230 F------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKR 269
F RE L++ AM A K F G HDFRNFCK+D A + +KR
Sbjct: 275 FTQPAFTPLPASLDPDGTRGREGWLDIDAMRRAAKLFEGVHDFRNFCKVDGAKQITTFKR 334
Query: 270 HVTSFEISPCYISFEGNQLCAIK-----------------------IRGSAFLWHQVRCM 306
V FE + G+ L + +RGSAFLWHQ+R M
Sbjct: 335 RV--FEADVVEVEGTGSALPYLALPDFRPEKLAEQGGTHPKVYYFHVRGSAFLWHQIRHM 392
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
VA+LF++GQGLE +I LLD PRKP Y +A E PLVL C F
Sbjct: 393 VAILFLVGQGLEKPSIITDLLDVEKNPRKPNYTLAAEAPLVLWDCIF 439
>gi|50293511|ref|XP_449167.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528480|emb|CAG62137.1| unnamed protein product [Candida glabrata]
Length = 438
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 118/273 (43%), Positives = 163/273 (59%), Gaps = 20/273 (7%)
Query: 92 RYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA-DKKESHYSRCGRTD 148
R++AL+ Y G + G A D PT+E I +AL K +L+ + +E +SRCGRTD
Sbjct: 86 RFIALRFAYLGWNYNGLAIQKDPTPLPTIEGTIIEALNKCKLVPSITPQEFEFSRCGRTD 145
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--I 206
KGVS++ QVI++ +RSN+ + E EI YV +LN++LP DIR+ +
Sbjct: 146 KGVSAMNQVISLRVRSNLTD--------EEQKDPRNDHKEIQYVAILNQLLPDDIRISAV 197
Query: 207 GWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVH 265
P P F ARFSC R YKY F ++ L+L M+ A K + GEHDFRNFCK+D + +
Sbjct: 198 CLRP-PNSFDARFSCEYRHYKYLFHKDGLDLDRMQKAAKLYEGEHDFRNFCKLDGSKQIT 256
Query: 266 NYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIES 325
NY R + S I Y N + GSAFLWHQVRCM A+LF++GQGLE +IE
Sbjct: 257 NYNRTMISANIKHVY-----NDFYCFDLIGSAFLWHQVRCMTAILFLVGQGLEEPTLIEK 311
Query: 326 LLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+LD +P+KP Y MA +IPL+L C F +++
Sbjct: 312 MLDVTSMPQKPMYEMASDIPLLLYDCKFPAMEW 344
>gi|354547215|emb|CCE43949.1| hypothetical protein CPAR2_501740 [Candida parapsilosis]
Length = 440
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/276 (43%), Positives = 167/276 (60%), Gaps = 21/276 (7%)
Query: 89 HFKRYVALKVMYFGQRFYGFAS--DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
H R+VAL+ Y G + G A + PTVE I K L K +L+ + +SRCGR
Sbjct: 79 HDLRFVALRFAYLGWNYNGLAYQFEPTPLPTVEETILKTLSKIKLIPEPIDQVEFSRCGR 138
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED-EIDYVRVLNRVLPKDIRV 205
TDKGVS++ QVI+I LRSN+ E Q +D EIDY+ ++N LP DI+V
Sbjct: 139 TDKGVSAMNQVISIKLRSNL---------TPEEQQSSTNDDREIDYLTIINANLPSDIKV 189
Query: 206 --IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA- 262
I P P DF ARFSC +R Y+Y F NL++ AM A + + G+HDFRNFCK+D +
Sbjct: 190 HSICLHP-PADFDARFSCKNRHYRYLFKSSNLDIDAMNKAAEYYQGQHDFRNFCKLDGSK 248
Query: 263 NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322
+ N++R + S +I I E + C + G+AFLWHQVRCMVA+LF++GQ LE ++
Sbjct: 249 QITNFERFIYSSKI----IHLEDDLYC-FDLVGTAFLWHQVRCMVAILFLVGQHLEKPEI 303
Query: 323 IESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+ L+D P KPQY MA +IPLVL C+F +++
Sbjct: 304 VTDLMDITKYPTKPQYEMANDIPLVLYDCEFPPMQW 339
>gi|401840675|gb|EJT43400.1| DEG1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 441
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 204/365 (55%), Gaps = 35/365 (9%)
Query: 60 VEENRKTESGGCKTGKKKVK-EKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP-- 116
EEN+K + + K K K + + H R +AL+ Y G + G A P
Sbjct: 58 TEENKKRKLPRKEVIKTKTKIAQKKFDFSRHNTRLIALRFAYLGWNYNGLAIQKEYTPLP 117
Query: 117 TVESEIFKALEKTRLLVA-DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNAS 175
TVE I +A+ K +L+ + +E +SRCGRTDKGVS++ QVI++ +RSN+
Sbjct: 118 TVEGIILEAMNKCKLVPSLVLQEYKFSRCGRTDKGVSAMNQVISLKVRSNL--------- 168
Query: 176 MGETVQEEQIED-----EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKY 228
EEQ++ EI YVRVLN++LP DIR+ + P P DF ARFSC+ R YKY
Sbjct: 169 ----TNEEQLDSANDCREISYVRVLNQLLPDDIRISAVCLRPPP-DFDARFSCVHRHYKY 223
Query: 229 FFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQ 287
F +NLN+ M A F+GE+DFRNFCK+D + + N+KR + S +I P +F
Sbjct: 224 VFNGKNLNIDKMSKAASYFLGENDFRNFCKLDGSKQITNFKRTMLSSKILPLSDTFYCFD 283
Query: 288 LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLV 347
L GSAFLWHQVRCM+A+LF+ GQ LE +++ LLD P++P Y+MA +IPL+
Sbjct: 284 LI-----GSAFLWHQVRCMMAILFLAGQELEEPEMVLRLLDIEKTPQRPIYDMADDIPLL 338
Query: 348 LQSCDFDGLKFT-CSLDAGHDLRLHLRNECQV--YQLQAAIFHEALLNCLPLANGLEIGS 404
L C+F L++ ++D +R+ E Y L+A + + LP A+
Sbjct: 339 LYDCEFPQLEWQETAVDDCKSIRVTTATEALTLHYGLKAMV-SNIFKDVLPTADTNNFTK 397
Query: 405 SLIHL 409
++I+L
Sbjct: 398 TIINL 402
>gi|157106978|ref|XP_001649570.1| pseudouridylate synthase [Aedes aegypti]
gi|108879706|gb|EAT43931.1| AAEL004663-PA [Aedes aegypti]
Length = 467
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/273 (42%), Positives = 168/273 (61%), Gaps = 25/273 (9%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
KR++ L+ Y G + G+AS + T+E +F AL + L+ +++ S+Y RCGRTDKG
Sbjct: 73 KRHILLRFYYLGWDYQGYASQEDSARTIEHLLFNALTRV-CLIENRETSNYHRCGRTDKG 131
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
VS+ QV+++ +RS N ++ E I +EI+Y ++LNRVLP+DIR + W P
Sbjct: 132 VSAFHQVVSLDVRSKFAPENQ--------LEPESIANEINYCQLLNRVLPQDIRCVAWMP 183
Query: 211 -APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKR 269
++SARF C SR Y+YFF R +LN+ AM+ A VG HDFRN CKMD N
Sbjct: 184 MVNPNYSARFDCRSRTYRYFFPRGSLNIDAMKEACTFLVGAHDFRNLCKMDVGN------ 237
Query: 270 HVTSFEISPCYISFEGNQ---------LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
V +F Y+S E +Q + +++RG AFLWHQVRC++AVLF++G+G E
Sbjct: 238 GVVTFTRRISYVSIEDSQSDAKESPYDMLYLELRGKAFLWHQVRCIMAVLFLVGEGKEEP 297
Query: 321 DVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
V++ LLD N P KPQY++A ++PL L C++
Sbjct: 298 SVVKELLDVNKNPCKPQYSLASDLPLNLYECEY 330
>gi|150865972|ref|XP_001385404.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054]
gi|149387228|gb|ABN67375.2| pseudouridine synthase [Scheffersomyces stipitis CBS 6054]
Length = 465
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/352 (37%), Positives = 193/352 (54%), Gaps = 39/352 (11%)
Query: 17 EALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKK 76
E L R+++LE ++KL S L + V D ++ R + +T
Sbjct: 33 EQLIERIQQLENSSSKLNSTLPVA---------SPVVNDAVASAKDIRSKKKKKVRTFD- 82
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA 134
+N + KR++ALK Y G + G A S+ PTVE + KAL +RL+
Sbjct: 83 ---------MNKYNKRFIALKFAYLGWNYNGLAYQSEPTPLPTVEEVVLKALTMSRLITE 133
Query: 135 DKKES-HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR 193
+ +SRCGRTDKGVS++ QVI++ +RSN+ E E + +E EI Y+
Sbjct: 134 PTPDKCKFSRCGRTDKGVSAMNQVISLVVRSNLNE--------EEQLLKENDHKEIKYLS 185
Query: 194 VLNRVLPKDIRVIG--WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251
++N +LP DIR+ P P F ARFSC R Y+Y F + +L++ M A K++G H
Sbjct: 186 IINALLPPDIRMTAVCLRPPPK-FDARFSCDYRHYRYLFKKHDLDIELMNEACIKYIGSH 244
Query: 252 DFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
DFRNFCK+D + + NY R V S +I I + + A+ ++GSAFLWHQVRCMVA+L
Sbjct: 245 DFRNFCKIDGSKQITNYVREVYSMKI----IHLK-DDFYAVDLKGSAFLWHQVRCMVAIL 299
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSL 362
F+IGQ LE+ +IE L D P KP Y MA +IPLVL C + +++ +
Sbjct: 300 FLIGQKLEATTIIEDLFDLEKYPTKPVYEMANDIPLVLYDCIYPEMEWLSPI 351
>gi|366990335|ref|XP_003674935.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
gi|342300799|emb|CCC68563.1| hypothetical protein NCAS_0B04790 [Naumovozyma castellii CBS 4309]
Length = 444
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 177/294 (60%), Gaps = 30/294 (10%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLV 133
KK K + H R+VAL+ Y G + G A ++ PT+E +I +AL +RL+
Sbjct: 70 KKAKRVRQFDFSQHSTRFVALRFAYLGWNYNGLAIQNEPTPLPTIEGKILEALHISRLVP 129
Query: 134 A-DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED----- 187
+ + +E +SRCGRTDKGVS++ QVI++ +RSN+ EEQ++
Sbjct: 130 SMNPREYQFSRCGRTDKGVSAMNQVISLRVRSNL-------------TPEEQLDPANDRR 176
Query: 188 EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGK 245
EI YV +LN++LP DIRV + P P F ARFSC SR YKY F + L++S M+
Sbjct: 177 EIKYVHILNQLLPDDIRVSAVCLRP-PEGFDARFSCESRHYKYLFSNDGLDISRMQEGAT 235
Query: 246 KFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
F+GEHDFRNFCK+D + + NYKR V S +I +I + L + + GSAFLWHQVR
Sbjct: 236 LFLGEHDFRNFCKLDGSKQITNYKRSVISAKI--LHIR---DDLYCLDLVGSAFLWHQVR 290
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
CM+A LF+IGQGLE +I + D P+KP Y+MA +IPL+L C F +++
Sbjct: 291 CMMAHLFLIGQGLEEPSLINDMFDIVKTPQKPIYDMASDIPLLLYDCKFPEMEW 344
>gi|365760937|gb|EHN02619.1| Deg1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 437
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 204/365 (55%), Gaps = 35/365 (9%)
Query: 60 VEENRKTESGGCKTGKKKVK-EKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP-- 116
EEN+K + + K K K + + H R +AL+ Y G + G A P
Sbjct: 58 TEENKKRKLPRKEVIKTKTKIGQKKFDFSRHNTRLIALRFAYLGWNYNGLAIQKEYTPLP 117
Query: 117 TVESEIFKALEKTRLLVA-DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNAS 175
TVE I +A+ K +L+ + +E +SRCGRTDKGVS++ QVI++ +RSN+
Sbjct: 118 TVEGIILEAMNKCKLVPSLVLQEYKFSRCGRTDKGVSAMNQVISLKVRSNL--------- 168
Query: 176 MGETVQEEQIED-----EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKY 228
EEQ++ EI YVRVLN++LP DIR+ + P P DF ARFSC+ R YKY
Sbjct: 169 ----TNEEQLDPANDCREISYVRVLNQLLPDDIRISAVCLRPPP-DFDARFSCVHRHYKY 223
Query: 229 FFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQ 287
F +NLN+ M A F+GE+DFRNFCK+D + + N+KR + S +I P +F
Sbjct: 224 VFNGKNLNIDKMSKAASYFLGENDFRNFCKLDGSKQITNFKRTMLSSKILPLSDTFYCFD 283
Query: 288 LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLV 347
L GSAFLWHQVRCM+A+LF+ GQ LE +++ LLD P++P Y+MA +IPL+
Sbjct: 284 LI-----GSAFLWHQVRCMMAILFLAGQELEEPEMVLRLLDIEKTPQRPIYDMADDIPLL 338
Query: 348 LQSCDFDGLKFT-CSLDAGHDLRLHLRNECQV--YQLQAAIFHEALLNCLPLANGLEIGS 404
L C+F L++ ++D +R+ E Y L+A + + LP A+
Sbjct: 339 LYDCEFPQLEWQETAVDDCKSIRVTTATEALTLHYGLKAMV-SNIFKDVLPTADTNNFTK 397
Query: 405 SLIHL 409
++I+L
Sbjct: 398 TIINL 402
>gi|312093536|ref|XP_003147717.1| hypothetical protein LOAG_12156 [Loa loa]
gi|307757118|gb|EFO16352.1| hypothetical protein LOAG_12156 [Loa loa]
Length = 414
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 125/320 (39%), Positives = 174/320 (54%), Gaps = 24/320 (7%)
Query: 63 NRKTESGGCKTGKKKVKEKMSG-TLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESE 121
++ + G GKK K K + H KR +AL MYFG + G + T+E E
Sbjct: 2 DKAIDIGSVSNGKKMRKRKTREFDFSRHPKRRIALMFMYFGWEYNGLVEQQEIAGTIEEE 61
Query: 122 IFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC-NTNNASMGETV 180
+ KAL KT+L V + ++RCGRTDKGVS+ QV ++ +RSN E ++ T
Sbjct: 62 MRKALMKTKL-VESWENCGWNRCGRTDKGVSAFKQVASLIVRSNEPEGEGVFWPAIAHTS 120
Query: 181 QEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAM 240
E ++ E+ YV++LN LP +IRV+ W+P P +FSAR+ C R Y Y F R N ++ AM
Sbjct: 121 SETAVKGELQYVKMLNSTLPTNIRVLAWAPVPENFSARYRCTQRTYTYAFPRANFDIEAM 180
Query: 241 ESAGKKFVGEHDFRNFCKMDAANVH---NYKRHVTSFEISPCYISFEGNQLCAIK----- 292
A + VGEHDFRNFC++D NY R ++ +IS N L A K
Sbjct: 181 RQACQFLVGEHDFRNFCRIDMNKGRVEMNYIRTISYADIS----LISNNSLLASKQSDEV 236
Query: 293 ---------IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPE 343
++GS FLWHQ+RC++A+L IG G E +VI LLD P KP Y +AP
Sbjct: 237 THYEFLQLTVKGSGFLWHQIRCIMALLCEIGLGNEKPEVISELLDIKLTPSKPIYGLAPA 296
Query: 344 IPLVLQSCDFDGLKFTCSLD 363
PL L C +DG++F+ D
Sbjct: 297 FPLCLFDCVYDGMEFSWKWD 316
>gi|328770686|gb|EGF80727.1| hypothetical protein BATDEDRAFT_3084 [Batrachochytrium
dendrobatidis JAM81]
Length = 289
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 168/272 (61%), Gaps = 18/272 (6%)
Query: 89 HFKRYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRT 147
H R++ALK+ Y G ++YGFAS N PTVES IFKALE RL+ +D +SRCGRT
Sbjct: 21 HRARHIALKISYIGDKYYGFASASNDSVPTVESYIFKALEVARLIPSDGGACAWSRCGRT 80
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
DKGVS+ QV+++++R+ A G+ ++ D++ Y+ +LNR+LP DIRV+
Sbjct: 81 DKGVSAFDQVVSVWVRT---------ARPGD--RDTLDWDQLPYLNILNRLLPDDIRVLA 129
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMD---AANV 264
WSP F ARF+C R+Y YFF L+L AM A +FVG HD R+ CK+D AA
Sbjct: 130 WSPVDPIFDARFTCSHRKYNYFFDGAGLDLIAMRDAASRFVGTHDCRHICKIDPTKAARE 189
Query: 265 HNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIE 324
+ R + +I P + ++ + ++G AFLWHQVR M+A+LF+IG+G+E D+I
Sbjct: 190 GFFVRTIMECDIVPVPVDGAPDRFHVLVVKGRAFLWHQVRNMMALLFLIGRGMEMPDMIS 249
Query: 325 SLLD-TNGIPR--KPQYNMAPEIPLVLQSCDF 353
+LD T P +P Y MAP+ PLVL C +
Sbjct: 250 DMLDLTKHAPAAGRPFYEMAPDGPLVLVECAY 281
>gi|241955317|ref|XP_002420379.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36]
gi|223643721|emb|CAX41457.1| tRNA pseudouridine synthase, putative [Candida dubliniensis CD36]
Length = 444
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/285 (43%), Positives = 166/285 (58%), Gaps = 22/285 (7%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
R+VA K Y G + G A G P TVE KAL K +L+ +E +SRCGRTDK
Sbjct: 87 RFVAFKFAYLGWNYNGLALQGEPTPLPTVEEMFLKALAKVKLIKEPIEEVKFSRCGRTDK 146
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--IG 207
GVS++ QVI+I +RSN+ N N + EIDY+ VLN LP DI+V I
Sbjct: 147 GVSAMNQVISIDVRSNLSLENQANPEFDD--------QEIDYISVLNANLPSDIKVHSIC 198
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHN 266
P P +F ARFSC+S Y+Y F +++LN+ M + G HDFRNFCK+D + + N
Sbjct: 199 LRPPP-EFDARFSCLSCHYRYIFRKQDLNIDLMNQGANLYQGIHDFRNFCKLDGSKQITN 257
Query: 267 YKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
+ R + +I + + C ++GSAFLWHQVRCMVA+LF IGQ LES +I L
Sbjct: 258 FVREIYQAQI----LHLHQDYYC-FDLKGSAFLWHQVRCMVAILFSIGQELESPSIITDL 312
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLH 371
+D P KPQY MA +IPLVL C+F +++ + D + RLH
Sbjct: 313 MDMTKYPTKPQYEMAHDIPLVLYDCEFPPMEWKSTND---EYRLH 354
>gi|194755854|ref|XP_001960194.1| GF13245 [Drosophila ananassae]
gi|190621492|gb|EDV37016.1| GF13245 [Drosophila ananassae]
Length = 492
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 197/345 (57%), Gaps = 22/345 (6%)
Query: 14 SQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKT 73
SQ E L +++ +LEA N +L + L +K+ D+ D E ++ T S K
Sbjct: 27 SQTE-LIDKIVQLEAYNFQLRNLLQ----KKLTDQDKDNEEYALLFAKDTDATVSKDAKI 81
Query: 74 GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV 133
++ + K + H +R+V LKV YFG + G A + T+ES +F+AL +T L+
Sbjct: 82 SSRQQQRKFDWSNAH--RRHVLLKVSYFGWDYQGLACQEDSNDTIESHLFRALTRT-CLI 138
Query: 134 ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR 193
+ S+Y RCGRTDK VS+ QVI+I LRS + +A+ I EIDY
Sbjct: 139 ESRATSNYHRCGRTDKEVSAFCQVISIDLRSKHPPESQLDAT--------SISSEIDYCG 190
Query: 194 VLNRVLPKDIRVIGWSP--APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251
+LNRVLPK+I+ + W P +P +SARF C++R Y+Y+F + +L++ AM+ A V
Sbjct: 191 LLNRVLPKNIQCVAWMPLRSPV-YSARFDCVARTYRYYFPKGDLDIPAMQEACNHLVRHA 249
Query: 252 DFRNFCKMDAAN-VHNYKRHVTSFEISPC--YISFEGNQLCAIKIRGSAFLWHQVRCMVA 308
DFRNFCKMD N V NY R++ S + C ++ G + ++I+ +AFLWHQ+RC++A
Sbjct: 250 DFRNFCKMDVHNGVTNYTRNLQSARVEACEETLTDSGYDMYYLEIQANAFLWHQIRCIMA 309
Query: 309 VLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
VL ++GQ E V+ LLD P KPQY A +PL L CDF
Sbjct: 310 VLILVGQKKEKPSVVTDLLDVEVNPCKPQYTPAIGLPLNLFRCDF 354
>gi|336379040|gb|EGO20196.1| hypothetical protein SERLADRAFT_363593 [Serpula lacrymans var.
lacrymans S7.9]
Length = 444
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 122/310 (39%), Positives = 178/310 (57%), Gaps = 36/310 (11%)
Query: 80 EKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNME-PTVESEIFKALEKTRLLVADK- 136
+K + H +R +A+K Y G + G A +G PTVE +F A KTRL+ DK
Sbjct: 46 QKKTFDFTSHPRRKIAVKFCYSGWEYNGLAFQNGPTPLPTVEEVLFNAFAKTRLVDPDKG 105
Query: 137 -KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVL 195
+ RCGRTD+GVS+ GQV+++++RS + E +A + E+ YV +L
Sbjct: 106 LDGCGWERCGRTDRGVSAAGQVVSLWVRSALDENRLKDA---------ETRSELRYVSIL 156
Query: 196 NRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRN 255
NRVLP IRV+ WSP + FSARF+C SR YKYFF + L+L M+ A + VGEHDFRN
Sbjct: 157 NRVLPPTIRVLAWSPISSTFSARFNCQSRHYKYFFSPQELDLGLMQQAADRLVGEHDFRN 216
Query: 256 FCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
CK+D A + N+ R V +ISP + LC +RG+AFL+HQVR ++A+LF++G
Sbjct: 217 LCKLDPAKQITNFNRRVLLAKISPI-----SDHLCVFDLRGTAFLYHQVRHIMAILFLVG 271
Query: 315 QGLESIDVIESLL----DTNG-----------IPRKPQYNMAPEIPLVLQSCDF--DGLK 357
GLE ++ +LL +TN + RKP+Y MA +PL+L C + ++
Sbjct: 272 TGLEHPSIVSTLLNVGKETNSPSELDNSPLEIVDRKPEYQMADGLPLMLWDCAYSDSDVQ 331
Query: 358 FTCSLDAGHD 367
+ +D G +
Sbjct: 332 WQTDIDTGEN 341
>gi|408390631|gb|EKJ70023.1| hypothetical protein FPSE_09868 [Fusarium pseudograminearum CS3096]
Length = 538
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 135/352 (38%), Positives = 185/352 (52%), Gaps = 68/352 (19%)
Query: 72 KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPT-VESEIFKALEKTR 130
K+ K KVK KM N + RY+ALK+ Y G+ + GF + +E E++ AL K
Sbjct: 43 KSTKPKVKRKMDP--NKYTTRYIALKLAYLGKNYGGFEFQAMANASSIEEELWNALTKAC 100
Query: 131 LLVADKKE------SHYSRCGRTDKGVSSVGQVIAIYLRS------------NIKECNTN 172
L+ + + YS+CGRTDKGVS+ GQVI + +RS E
Sbjct: 101 LIFPEDERIVDFDCCEYSKCGRTDKGVSAFGQVIGLRVRSARPVPKKRRRLSEAGEAMVV 160
Query: 173 NASMGETVQEE---------QIEDEIDYVRVLNRVLPKDIRVIGWSPAPT-DFSARFSCI 222
+ G+ +EE I+DE+ Y R+LNRVLP DIR++ W P+P DFSARFSC
Sbjct: 161 DEQSGDNAEEEVEDNTPPFDPIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCR 220
Query: 223 SREYKYFFWREN--------------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNY 267
R+Y+YFF + L++ AM A K++ G+HDFRNFCK+D + N+
Sbjct: 221 ERQYRYFFTQPAFTPEPSAGGSRNGWLDIEAMRDAAKRYEGDHDFRNFCKIDPGKQITNF 280
Query: 268 KRHVTSFEI--------------SPCYISFEG--------NQLCAIKIRGSAFLWHQVRC 305
+R + +I SP + EG ++ K+RGSAFLWHQ+R
Sbjct: 281 ERTIYEADIEEVRDVSSALPYLSSPQFAPAEGLPTDDAKYPKVYCFKVRGSAFLWHQIRH 340
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLK 357
MVAVLF+ GQ LE+ DV+ +LD P KP Y MA E+PLVL C F K
Sbjct: 341 MVAVLFLAGQRLETPDVVTMMLDVAKNPCKPNYVMADEVPLVLWDCIFPSEK 392
>gi|289742875|gb|ADD20185.1| pseudouridylate synthase [Glossina morsitans morsitans]
Length = 444
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 172/309 (55%), Gaps = 21/309 (6%)
Query: 51 DGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFAS 110
D +G +E TE K+ +K + FKR+V LK +YFG + GFA
Sbjct: 20 DSGTEGIEGIETMPTTEPNQEKSSSRKF------DFSKTFKRHVLLKFLYFGWDYQGFAC 73
Query: 111 DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECN 170
+ T+E +FKAL +T L+ + ++Y RCGRTDK VS+ QVI+I LRS E
Sbjct: 74 QEDSNNTIEFHLFKALTRT-CLIESRSSANYHRCGRTDKKVSAFCQVISIDLRSKFPE-- 130
Query: 171 TNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD-FSARFSCISREYKYF 229
+ +E +E EIDY ++NRVLPK+IR I W P FSARF CI+R Y+YF
Sbjct: 131 ------KQQFEESCLEKEIDYCGIMNRVLPKNIRCISWMPIRNHLFSARFDCITRTYRYF 184
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFE---- 284
F + NLN++AM+ A K DFRN CKMD N V NY RH+ + + C E
Sbjct: 185 FPKGNLNITAMQDACKLLQRHTDFRNLCKMDVHNGVTNYVRHIEAANVRLCPHQNESKNK 244
Query: 285 GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEI 344
G + ++I+ +AFLWHQ+RC++ VL +IGQ E VI LL+ P KPQY A
Sbjct: 245 GYAMHYLEIKANAFLWHQIRCIMTVLLLIGQEKEEPSVINELLNVEKNPCKPQYTPAMGF 304
Query: 345 PLVLQSCDF 353
PL L C+F
Sbjct: 305 PLNLYHCEF 313
>gi|342871954|gb|EGU74369.1| hypothetical protein FOXB_15103 [Fusarium oxysporum Fo5176]
Length = 546
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 203/405 (50%), Gaps = 85/405 (20%)
Query: 18 ALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKK 77
L +VKELEA+ + ++ G E + EN E K K K
Sbjct: 14 GLIQKVKELEAE---------------LRNRPAPGPEPKPEIQPENE--EGDEAKRTKPK 56
Query: 78 VKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPT-VESEIFKALEKTRLLVADK 136
K KM + + RY+ALK+ Y G+ + GF + +E E++ AL K L+ +
Sbjct: 57 GKRKMDPS--KYSTRYIALKLAYLGKNYGGFEFQAMANASSIEEELWNALTKACLIFPED 114
Query: 137 KE------SHYSRCGRTDKGVSSVGQVIAIYLRSN--IKECNTNNASMGET-VQEEQ--- 184
+ YS+CGRTDKGVS+ GQVI + +RSN + + + GE V +EQ
Sbjct: 115 ERIVDFDCCEYSKCGRTDKGVSAFGQVIGLRVRSNRPLPKKRRRLSEAGEAMVVDEQAGE 174
Query: 185 ---------------IEDEIDYVRVLNRVLPKDIRVIGWSPAPT-DFSARFSCISREYKY 228
I+DE+ Y R+LNRVLP DIR++ W P+P DFSARFSC R+Y+Y
Sbjct: 175 NAEEEPVEETPSFDDIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRY 234
Query: 229 FFWREN--------------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTS 273
FF + L++ AM A K++ GEHDFRNFCK+D + N+ R +
Sbjct: 235 FFTQPAFTPEPSAGGARNGWLDIEAMREAAKRYEGEHDFRNFCKIDPGKQITNFVRTIYE 294
Query: 274 FEI------SPCYISFEGNQ----------------LCAIKIRGSAFLWHQVRCMVAVLF 311
+I S G+Q + + +RGSAFLWHQ+R MVAVLF
Sbjct: 295 ADIEEVKDVSSTLPYLSGSQYVPAGGLPNDGTVYPKVYSFNVRGSAFLWHQIRHMVAVLF 354
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL 356
+ GQ LE+ DV+ +LLD P KP Y MA E+PLVL C F GL
Sbjct: 355 LAGQKLETPDVVTTLLDVKANPCKPNYVMADEVPLVLWDCIFPGL 399
>gi|323452423|gb|EGB08297.1| hypothetical protein AURANDRAFT_11850, partial [Aureococcus
anophagefferens]
Length = 266
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/290 (44%), Positives = 171/290 (58%), Gaps = 33/290 (11%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASD---GNMEPTVESEIFKALEKTRLL 132
KK K+K ++ + +R +AL + Y G + GFA G TVE ++F AL+KT L
Sbjct: 1 KKEKKKAGMDMSRYEQRCIALWISYEGGAYSGFAEQNIPGAGVDTVERQLFAALKKT-CL 59
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
V ++ YSRCGRTDKGVS++GQV+ + +RS A GE +DYV
Sbjct: 60 VESRESCGYSRCGRTDKGVSALGQVVGLRVRSA--------ARAGEP---------LDYV 102
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSA------MESAGKK 246
+LNRVLP D+R + W P +FSARFSC SR Y+YFF + N A M +A +
Sbjct: 103 NMLNRVLPDDVRALAWRPVVPEFSARFSCASRTYRYFFPATSPNTGAAYDVPAMAAAAAR 162
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
VG+HDFRNFCKMD +V N++R V + ++ F +I G AFLWH VR +
Sbjct: 163 LVGDHDFRNFCKMDVLHVKNFRRVVYAADVRKTGDGF------FFEIHGQAFLWHMVRSL 216
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL 356
VAVLF++G+GLE V+++LLD PRKPQY +A E PLVL C FD L
Sbjct: 217 VAVLFLVGEGLEPPAVVDALLDVARTPRKPQYLIADERPLVLHDCAFDTL 266
>gi|444317471|ref|XP_004179393.1| hypothetical protein TBLA_0C00580 [Tetrapisispora blattae CBS 6284]
gi|387512434|emb|CCH59874.1| hypothetical protein TBLA_0C00580 [Tetrapisispora blattae CBS 6284]
Length = 435
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/280 (42%), Positives = 172/280 (61%), Gaps = 20/280 (7%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA-DKKESHYS 142
+ + R++ALK Y G + G A D PTVE I +A+ K +L+ + ++ ++S
Sbjct: 78 FSKYHTRFIALKFAYLGWNYNGLAIQKDYTPLPTVEGTILEAMNKCKLVPSMSPQDYNFS 137
Query: 143 RCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
RCGRTDKGVS++ QVI++ +RSN+ S E + + DEI YV +LN+VLP D
Sbjct: 138 RCGRTDKGVSAMSQVISLNVRSNL--------SNEEQLNPLKDSDEIHYVDILNQVLPAD 189
Query: 203 IRV--IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMD 260
IR+ + P P+ F+ARFSC + F ++NL++ M+ A K + GEHDFRNFCK+D
Sbjct: 190 IRISAVCLRP-PSGFNARFSCYKSSLQVFIRKKNLDIEKMKIAAKLYQGEHDFRNFCKLD 248
Query: 261 AA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + NY R + S +I P G+ C + GSAFLWHQVRCM+A+LF+IGQGLE
Sbjct: 249 GSKQITNYNRTIISADILP----INGDFYC-FDLVGSAFLWHQVRCMMAILFLIGQGLEE 303
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359
+I +LD PRKP Y+MA ++PL+L C F + ++
Sbjct: 304 PSLINLMLDIEKTPRKPIYDMASDVPLILYDCKFPEMNWS 343
>gi|255710543|ref|XP_002551555.1| KLTH0A02222p [Lachancea thermotolerans]
gi|238932932|emb|CAR21113.1| KLTH0A02222p [Lachancea thermotolerans CBS 6340]
Length = 443
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 191/314 (60%), Gaps = 32/314 (10%)
Query: 92 RYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVAD-KKESHYSRCGRTD 148
R+VA K Y G + G A + PTVE I +A+ +L+ + ++ ++SRCGRTD
Sbjct: 87 RFVAFKFAYLGWNYNGLAIQKEPTPLPTVEGTILEAMNACKLVPSMVPQDYNFSRCGRTD 146
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--I 206
KGVS++ QVI++++RSN+ + E EE EIDY+ +LN++LP DIR+ +
Sbjct: 147 KGVSAMNQVISLHVRSNL--------TREEQQDEENDGREIDYIHILNQLLPDDIRISAV 198
Query: 207 GWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVH 265
P PT+F ARFSC R Y+Y F ++ L++ ME A + + GEHDFRNFCK+D + ++
Sbjct: 199 CLRP-PTNFDARFSCQYRHYRYLFHKDGLDIKKMEEAARMYEGEHDFRNFCKLDGSKQIN 257
Query: 266 NYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIES 325
NYKR++ I IS + C + + GSAFLWHQVRCM+A LF+IGQGLE +++
Sbjct: 258 NYKRNIERSRI----ISLSEDIYC-LDLIGSAFLWHQVRCMMANLFLIGQGLEDTTLLKD 312
Query: 326 LLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQ--- 382
L+D + +KP Y+MA +IPL+L C F +++ ++D+ + L+++ +VY L
Sbjct: 313 LMDVARVKQKPIYDMASDIPLILFDCKFPEMEWK-TVDSNN--FKSLQSDRRVYALSLDY 369
Query: 383 ------AAIFHEAL 390
A IF E L
Sbjct: 370 NLKSTVANIFRETL 383
>gi|195122857|ref|XP_002005927.1| GI20747 [Drosophila mojavensis]
gi|193910995|gb|EDW09862.1| GI20747 [Drosophila mojavensis]
Length = 500
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 140/366 (38%), Positives = 202/366 (55%), Gaps = 43/366 (11%)
Query: 4 AKQELISSLQSQLEA--------LQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVED 55
+K ELI + QLEA LQ ++ E + +N++ + L + DG E
Sbjct: 23 SKTELIDKI-VQLEAYNFQLKNLLQKKLSEADKNNSEYAAVL----------RGADGDEL 71
Query: 56 GTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNME 115
+V E K K K K++ + H +R+V +K+ YFG + GFA +
Sbjct: 72 PNKVVSETVKD------VPKNKDKQRKFNWASAH-QRHVLMKITYFGWDYQGFACQEDSA 124
Query: 116 PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNAS 175
T+E +F+ALE+T L+ + S+Y RCGRTDK VS+ QVI+I LRS S
Sbjct: 125 DTIEGYLFRALERT-CLIESRATSNYHRCGRTDKEVSAFCQVISINLRSK--------HS 175
Query: 176 MGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT-DFSARFSCISREYKYFFWREN 234
++ E + EIDY +LNRVLPK+I+ + W P D+SARF CISR Y+Y+F + +
Sbjct: 176 PDTQMKPESLNTEIDYCSLLNRVLPKNIQCVSWMPLRNPDYSARFDCISRTYRYYFPKGD 235
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYIS---FEGNQ--- 287
L++ +M+ A + V DFRNFCKMD N V NY R++ EI PC + E N
Sbjct: 236 LDIDSMQQACQLLVCHGDFRNFCKMDVHNGVTNYMRNLQHAEIRPCDNTERQLEQNSGYI 295
Query: 288 LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLV 347
+ ++I+ +AFLWHQ+RC++AVL ++GQ E +I LLD P KPQY A +PL
Sbjct: 296 MYYLEIKANAFLWHQIRCIMAVLLLVGQKNEQPSIITKLLDVGSNPCKPQYTPAIGLPLN 355
Query: 348 LQSCDF 353
L C+F
Sbjct: 356 LFHCEF 361
>gi|19115377|ref|NP_594465.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe
972h-]
gi|74698445|sp|Q9UTB3.1|YL85_SCHPO RecName: Full=Putative tRNA pseudouridine synthase C25B8.05
gi|6469292|emb|CAB61771.1| tRNA-pseudouridine synthase (predicted) [Schizosaccharomyces pombe]
Length = 450
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/279 (42%), Positives = 165/279 (59%), Gaps = 30/279 (10%)
Query: 93 YVALKVMYFGQRFYGFAS--DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+VA K Y G + G A + PTVE ++F+AL + L + D +SRCGRTDKG
Sbjct: 93 FVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHL-ITDPSSCSFSRCGRTDKG 151
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
VS++GQVI++ +R + + I Y VLNR+LP DIR+ G++
Sbjct: 152 VSAMGQVISLNVRHSERR-------------------PIIYCDVLNRLLPADIRITGYAF 192
Query: 211 APTDFSARFSCISREYKYFFWRE----NLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVH 265
P F ARFSC R YKY F ++ +L++ M A ++GEHDFRNFCK+DA+ +
Sbjct: 193 PPEGFDARFSCKQRHYKYLFTKDYPGGSLDIDRMNEAAALYLGEHDFRNFCKIDASKQIT 252
Query: 266 NYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIES 325
NY R + S ++ C G L A ++G+AFLWHQVRCM+A+LF+IGQ LE +I
Sbjct: 253 NYHRRILSSKVI-CIDPSTG--LYAFDLQGTAFLWHQVRCMMAILFLIGQKLEPASLIND 309
Query: 326 LLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
LLD +P KP Y+MA E PL+L CDFD +++T D+
Sbjct: 310 LLDIKKVPTKPIYDMASEYPLILYDCDFDNIEWTLPTDS 348
>gi|67484392|ref|XP_657416.1| pseudouridine synthase [Entamoeba histolytica HM-1:IMSS]
gi|56474668|gb|EAL52030.1| pseudouridine synthase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449706882|gb|EMD46641.1| tRNA pseudouridine synthase, putative [Entamoeba histolytica KU27]
Length = 366
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 175/296 (59%), Gaps = 30/296 (10%)
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGF-------ASDGNMEP-----TVESEIFK 124
++K+K + N++ R++A+++ Y G + G +D + T+E ++FK
Sbjct: 21 QLKKKKEFSFNNYKTRHIAIRLTYIGIDYNGIQCTLLNDVTDATFDSVINDGTIEYQLFK 80
Query: 125 ALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184
AL KTRL + + K+ Y+RCGRTDKGVS+ GQV+ +++RSN+K+ ET+ +
Sbjct: 81 ALFKTRL-IQNTKDCKYNRCGRTDKGVSAFGQVVDLWVRSNLKD---------ETILYTK 130
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244
E E+DY R+LN +LP DIR +GW P DF++RFSC SR Y Y+F + ++ M+ A
Sbjct: 131 REGELDYCRMLNGLLPTDIRCLGWCGVPDDFNSRFSCQSRTYHYYFDPSSYDVPKMKEAA 190
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
+ F+GEHDF NFCK D A H +R V SFE+ E + L + G+AF+WHQVR
Sbjct: 191 QLFLGEHDFTNFCKKDPAVSHCVRR-VNSFEVE------ETDGLSRFVVCGTAFVWHQVR 243
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTC 360
MV LF IGQG + I+ LLD + + AP PLVL C +DG++F C
Sbjct: 244 YMVGALFAIGQGANP-ESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKYDGVEFLC 298
>gi|195382396|ref|XP_002049916.1| GJ20484 [Drosophila virilis]
gi|194144713|gb|EDW61109.1| GJ20484 [Drosophila virilis]
Length = 509
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/347 (39%), Positives = 197/347 (56%), Gaps = 27/347 (7%)
Query: 19 LQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEEN----RKTESGGCKTG 74
L +++ +LEA N +L + L +K+ + + E L E+ + +S +G
Sbjct: 27 LIDKIVQLEAYNFQLKNLLQ----KKLTESDKNNYEYTAVLRREDEQELKPKDSEKDTSG 82
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA 134
KK + K + H KR+V +KVMYFG + GFA + T+E+ +F+AL +T L+
Sbjct: 83 KKDKQRKFNWASAH--KRHVLIKVMYFGWDYQGFACQEDSMDTIEAYLFRALIRT-CLIE 139
Query: 135 DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRV 194
+ S+Y RCGRTDK VS+ QVI+I LRS + + M + E + EIDY +
Sbjct: 140 SRATSNYHRCGRTDKEVSAFCQVISIDLRSK----HAPDVQM----EPEALSSEIDYCSL 191
Query: 195 LNRVLPKDIRVIGWSPAPTD-FSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
LNRVLPK+I+ + W P +SARF CISR Y+Y+F + +L++ AM A + V DF
Sbjct: 192 LNRVLPKNIQCVSWMPLRNPAYSARFDCISRTYRYYFPKGDLDIEAMRIACQSLVCHGDF 251
Query: 254 RNFCKMDAAN-VHNYKRHVTSFEISPC------YISFEGNQLCAIKIRGSAFLWHQVRCM 306
RNFCKMD N V NY R++ I PC S G + ++I+G+AFLWHQ+RC+
Sbjct: 252 RNFCKMDVHNGVTNYMRNLQGAAIKPCDNTDIQMHSNSGYAMYYLEIQGNAFLWHQIRCI 311
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+AVL ++GQ E VI LLD P KPQY A +PL L C+F
Sbjct: 312 MAVLLLVGQKHEQPCVISKLLDVVSNPCKPQYTPAIGLPLNLFRCEF 358
>gi|410076082|ref|XP_003955623.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
gi|372462206|emb|CCF56488.1| hypothetical protein KAFR_0B01890 [Kazachstania africana CBS 2517]
Length = 436
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 186/325 (57%), Gaps = 45/325 (13%)
Query: 87 NHHFKRYVALKVMYFGQRFYGFASDGNME--PTVESEIFKALEKTRLLVA-DKKESHYSR 143
+++ R++ALK Y G + G A + PTVE I +A+ K +L+ + +E ++SR
Sbjct: 81 SNYSTRFIALKFAYLGWNYNGLAIQKEVTKLPTVEGTILEAMNKCKLIPSMVPQEYNFSR 140
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED-----EIDYVRVLNRV 198
CGRTDKGVS++ QVI++ +RSN+ E EEQ++ EI YV +LN++
Sbjct: 141 CGRTDKGVSAMNQVISLRVRSNLTE-------------EEQMDPQNDVREIQYVTILNQL 187
Query: 199 LPKDIRVIGWS-PAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFC 257
LP DIRV S P F ARFSC +R YKY F LNL+ ME A K F GEHDFRNFC
Sbjct: 188 LPADIRVFAVSLRPPPGFDARFSCKARHYKYIFHNSGLNLTKMEEAAKFFEGEHDFRNFC 247
Query: 258 KMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
K+D + + NYKR + S +I + N C + GSAFLWHQVRCM+A LF++GQ
Sbjct: 248 KIDGSKQITNYKRTILSAKI----LKISNNFYC-FDLIGSAFLWHQVRCMMANLFLVGQE 302
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSC--------------DFDGLKFTCSL 362
LE +I ++D P+KP Y MA ++PL+L C D+ +K+ ++
Sbjct: 303 LEEPQLIPDMMDVVKTPQKPIYEMASDVPLLLYDCKFPDDVEWIETNVDDYKSIKYGKAV 362
Query: 363 DAGHDLRLHLRNECQVYQLQAAIFH 387
DA L L+ + + +V ++ I H
Sbjct: 363 DA---LTLNYQIKTKVAEVFKQILH 384
>gi|195171697|ref|XP_002026640.1| GL11833 [Drosophila persimilis]
gi|194111566|gb|EDW33609.1| GL11833 [Drosophila persimilis]
Length = 421
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 199/349 (57%), Gaps = 26/349 (7%)
Query: 14 SQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKT 73
SQ E L +++ +LEA N +L + L +K+ + E L +E T + +T
Sbjct: 27 SQTE-LIDKIVQLEAYNFQLRNLLH----KKLTEHDRSNAEYAELLGKETAATATAPKET 81
Query: 74 ----GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKT 129
GK K + K ++ H +R+V LK+ YFG + GFA + T+ES +F+AL +T
Sbjct: 82 TTHSGKVKKQRKFDWSIAH--QRHVLLKLTYFGWDYQGFACQEDSNDTIESHLFRALTRT 139
Query: 130 RLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEI 189
L+ + S+Y RCGRTDK VS+ QVI+I LRS + ++ + EI
Sbjct: 140 -CLIESRATSNYHRCGRTDKEVSAFCQVISIDLRSK--------HTPDTQLEPASLSSEI 190
Query: 190 DYVRVLNRVLPKDIRVIGWSP--APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKF 247
DY +LNRVLPK+I+ + W P +P +SARF C SR Y+Y+F + +L++ AM A K
Sbjct: 191 DYCGLLNRVLPKNIQCVAWMPLRSPV-YSARFDCTSRSYRYYFPKGDLDIEAMREACKLL 249
Query: 248 VGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPC--YISFEGNQLCAIKIRGSAFLWHQVR 304
VG DFRNFCKMD N V + R++ + + PC ++ G + ++I+ +AFLWHQ+R
Sbjct: 250 VGHSDFRNFCKMDVHNGVTKFIRNLQAARVEPCVEMLNNSGYDMYYLEIQANAFLWHQIR 309
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
C++AVL ++GQ E ++ LLD P KPQY A +PL L C+F
Sbjct: 310 CIMAVLLLVGQRRELPRIVSDLLDVETNPCKPQYTPALGLPLNLFHCNF 358
>gi|125811944|ref|XP_001362058.1| GA15853 [Drosophila pseudoobscura pseudoobscura]
gi|54637235|gb|EAL26638.1| GA15853 [Drosophila pseudoobscura pseudoobscura]
Length = 497
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 199/349 (57%), Gaps = 26/349 (7%)
Query: 14 SQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKT 73
SQ E L +++ +LEA N +L + L +K+ + E L +E T + +T
Sbjct: 27 SQTE-LIDKIVQLEAYNFQLRNLLH----KKLTEHDRSNAEYAELLGKETAATATAPKET 81
Query: 74 ----GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKT 129
GK K + K ++ H +R+V LK+ YFG + GFA + T+ES +F+AL +T
Sbjct: 82 TTHSGKVKKQRKFDWSIAH--QRHVLLKLTYFGWDYQGFACQEDSNDTIESHLFRALTRT 139
Query: 130 RLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEI 189
L+ + S+Y RCGRTDK VS+ QVI+I LRS + ++ + EI
Sbjct: 140 -CLIESRATSNYHRCGRTDKEVSAFCQVISIDLRSK--------HTPDTQLEPASLSSEI 190
Query: 190 DYVRVLNRVLPKDIRVIGWSP--APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKF 247
DY +LNRVLPK+I+ + W P +P +SARF C SR Y+Y+F + +L++ AM A K
Sbjct: 191 DYCGLLNRVLPKNIQCVAWMPLRSPV-YSARFDCTSRSYRYYFPKGDLDIEAMREACKLL 249
Query: 248 VGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPC--YISFEGNQLCAIKIRGSAFLWHQVR 304
VG DFRNFCKMD N V + R++ + + PC ++ G + ++I+ +AFLWHQ+R
Sbjct: 250 VGHSDFRNFCKMDVHNGVTKFIRNLQAARVEPCVEMLNNSGYDMYYLEIQANAFLWHQIR 309
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
C++AVL ++GQ E ++ LLD P KPQY A +PL L C+F
Sbjct: 310 CIMAVLLLVGQRRELPRIVSDLLDVETNPCKPQYTPALGLPLNLFHCNF 358
>gi|367007832|ref|XP_003688645.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
gi|357526955|emb|CCE66211.1| hypothetical protein TPHA_0P00530 [Tetrapisispora phaffii CBS 4417]
Length = 422
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 164/268 (61%), Gaps = 20/268 (7%)
Query: 92 RYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA-DKKESHYSRCGRTD 148
R++ALK Y G + G A + PTVE I A+ K +L+ + + + +SRCGRTD
Sbjct: 64 RFIALKFAYLGWNYNGLAIQKEPTALPTVEGVIVDAMNKCKLIPSINPSDFKFSRCGRTD 123
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV--I 206
KGVS++ QVI++ +RSN+ + + + E EI Y+ +LN++LP DIR+ +
Sbjct: 124 KGVSAMNQVISLNVRSNL--------TPEQQMNSEFDSKEIQYINILNQLLPDDIRISAV 175
Query: 207 GWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVH 265
P PT F ARFSC R YKY F ++ LN+SAME+A F GEHDFRNFCK+D + +
Sbjct: 176 CLRP-PTGFDARFSCQYRHYKYLFKKDGLNISAMETAASYFKGEHDFRNFCKLDGSKQIT 234
Query: 266 NYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIES 325
N+KR + S +I + + GSAFLWHQVRCM A+LF++GQ LE +++
Sbjct: 235 NFKRTMMSSQILQV-----NEEFYCFDLIGSAFLWHQVRCMTAILFLVGQNLEVPEIVSQ 289
Query: 326 LLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
L+D P+KP Y+MA +IPL+L C F
Sbjct: 290 LVDVASNPQKPIYDMASDIPLILYDCKF 317
>gi|407035846|gb|EKE37872.1| pseudouridine synthase, putative [Entamoeba nuttalli P19]
Length = 366
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/296 (40%), Positives = 174/296 (58%), Gaps = 30/296 (10%)
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGF-------ASDGNMEP-----TVESEIFK 124
++K+K + N++ R++A+ + Y G + G +D + T+E ++FK
Sbjct: 21 QLKKKKEFSFNNYKTRHIAIHLTYIGIDYNGIQCTLLNDVTDATFDSVVNDGTIEYQLFK 80
Query: 125 ALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184
AL KTRL + + K+ Y+RCGRTDKGVS+ GQV+ +++RSN+K+ ET+ +
Sbjct: 81 ALFKTRL-IQNTKDCKYNRCGRTDKGVSAFGQVVDLWVRSNLKD---------ETILYTK 130
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244
E E+DY R+LN +LP DIR +GW P DF++RFSC SR Y Y+F + ++ M+ A
Sbjct: 131 REGELDYCRMLNGLLPTDIRCLGWCGVPDDFNSRFSCQSRTYHYYFDPSSYDVPKMKEAA 190
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
+ F+GEHDF NFCK D A H +R V SFE+ E + L + G+AF+WHQVR
Sbjct: 191 QLFLGEHDFTNFCKKDPAVSHCVRR-VNSFEVE------ETDGLSRFVVCGTAFVWHQVR 243
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTC 360
MV LF IGQG + I+ LLD + + AP PLVL C +DG++F C
Sbjct: 244 YMVGALFAIGQGANP-ESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKYDGVEFLC 298
>gi|339243255|ref|XP_003377553.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
gi|316973638|gb|EFV57202.1| putative tRNA pseudouridine synthase tag-124 [Trichinella spiralis]
Length = 471
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 174/314 (55%), Gaps = 42/314 (13%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCG 145
+ + +R++AL V Y G GF + N + TVES+IFKAL +T+L + + ++YSRCG
Sbjct: 31 FSRYCRRHIALMVAYLGWDLDGFCAQNNSQNTVESKIFKALIETKL-IQSLETANYSRCG 89
Query: 146 RTDKGVSSVGQVIAIYLRSNI--------KECNTNNASMGETVQEEQIEDEIDYVRVLNR 197
RTDK VS+ QV+++ +RSN + N + + +E+DY ++LN
Sbjct: 90 RTDKTVSAFSQVLSLDVRSNQTTGVGVFEPDGYCPNEPKPTSRKTTPKSEELDYAKILNS 149
Query: 198 VLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSA------------------ 239
VLP++IRV+ W+P F+AR++C SR+YKYFF + LNL
Sbjct: 150 VLPQEIRVLAWAPVERTFNARYNCTSRQYKYFFPKGALNLKVSTVVDFLHFSAIVALFSN 209
Query: 240 ------------MESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEG-- 285
ME A K+ +GEHDFRNFCK+D + T F++ ++ G
Sbjct: 210 FRRGTICVYFQLMEQASKRLIGEHDFRNFCKIDMSKNEIQSCVRTVFDVQFTKVNAGGLN 269
Query: 286 -NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEI 344
LC I +AFLWHQ+RC+++VLF IG+G E DVIE LL+T P KPQY+M
Sbjct: 270 SRTLCCFTIVANAFLWHQIRCIMSVLFAIGEGKEQPDVIEWLLNTELCPAKPQYSMVVGW 329
Query: 345 PLVLQSCDFDGLKF 358
PLVL C +D L++
Sbjct: 330 PLVLYGCQYDNLEW 343
>gi|270006513|gb|EFA02961.1| hypothetical protein TcasGA2_TC030541 [Tribolium castaneum]
Length = 365
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/355 (35%), Positives = 186/355 (52%), Gaps = 35/355 (9%)
Query: 51 DGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFAS 110
D +ED T VE NR K S R+V LK +Y G + G+ +
Sbjct: 2 DNLEDRTKEVETNRSISKSKNNFFVPPFKLISSCKF-----RHVLLKFLYLGWDYQGYVT 56
Query: 111 DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECN 170
+ T+E +F AL KT L+ ++ ++Y RCGRTDK + S G
Sbjct: 57 QEDTVNTIEHHVFNALIKT-CLIENRSSANYHRCGRTDKDLRSNG--------------- 100
Query: 171 TNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF 230
+ E EI+Y ++LNRVLP++I+ + W P + FSARF C +R YKYFF
Sbjct: 101 ------------DDFESEINYCKILNRVLPENIQFVAWCPVESAFSARFDCKNRTYKYFF 148
Query: 231 WRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGNQLC 289
+ NL++ AM+ A VG HDFRNFCKMD N V +KR++ S +IS + E +
Sbjct: 149 PKSNLDIDAMKIAANYLVGTHDFRNFCKMDVNNGVVEFKRNILSVDIS-LFQEDERYSIQ 207
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
+ I+G+AFLWHQ+RC+V +L ++GQG E +V+ LLD PRKP Y+MA EIPL L
Sbjct: 208 VLTIKGNAFLWHQIRCIVGILILVGQGKEKPEVVLDLLDITRNPRKPDYHMASEIPLNLY 267
Query: 350 SCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGS 404
C +D + + +A + ++ L ++ A+ L++ A+ L+ S
Sbjct: 268 DCHYDNVNWIYDKEALNIVKAKLYKFWMFSSIKTAMMKSMLVDLEKEASELDHDS 322
>gi|380094960|emb|CCC07462.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 666
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/339 (38%), Positives = 177/339 (52%), Gaps = 74/339 (21%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKES------HYSRC 144
R +ALK Y G+ + GF + + P++E E++KAL K+ L+ ++ + YS+C
Sbjct: 142 RLIALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLVFPERPDEVDFGPWEYSKC 201
Query: 145 GRTDKGVSSVGQVIAIYLRSN-------IKECNTNNAS---MGETVQEE----------- 183
GRTD+GVS+ GQVI I +RSN ++ N M E Q+E
Sbjct: 202 GRTDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGGNGGDDVVMTEPQQQEAEKATDVEHQK 261
Query: 184 ----QIEDEIDYVRVLNRVLPKDIRVIGWSPA-PTDFSARFSCISREYKYFFWREN---- 234
I DE+ Y RVLNR+LP DIR++ W+PA P +FSARFSC R+Y+YFF +
Sbjct: 262 PEWDPIADEVPYCRVLNRLLPPDIRIMAWAPALPPNFSARFSCRERQYRYFFTQPAFAPM 321
Query: 235 ----------------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI- 276
L++ M A K F G HDFRNFCK+D + N+ R + +I
Sbjct: 322 PSSLEPLAKKQEKQGWLDIGKMREAAKMFEGVHDFRNFCKIDPGKQITNFSRRIFESDIV 381
Query: 277 -----------------SPCYISFEGN--QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
P EG+ ++ +RGSAFLWHQ+R MVAVLF++GQGL
Sbjct: 382 EVKDVESDLPYLGLPEFQPLAGGSEGSHPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGL 441
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL 356
E +++ LLD PRKP Y MA E+PLVL C F L
Sbjct: 442 EPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIFPKL 480
>gi|213406756|ref|XP_002174149.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|212002196|gb|EEB07856.1| tRNA pseudouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 426
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/276 (41%), Positives = 169/276 (61%), Gaps = 33/276 (11%)
Query: 92 RYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
+++AL+ Y G + G F ++ PTVE ++F+AL + L + D +SRCGRTDK
Sbjct: 72 KFIALRFAYLGWNYNGLAFQTEPTPLPTVEGKLFEALMRAHL-IKDPSTCSFSRCGRTDK 130
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GVS++GQV+++ +R + E I Y VLNR+LP+DIRVI +S
Sbjct: 131 GVSAMGQVVSLNVRYSE-------------------ERPIAYCDVLNRLLPEDIRVIAYS 171
Query: 210 PAPTD-FSARFSCISREYKYFFWRE----NLNLSAMESAGKKFVGEHDFRNFCKMDAA-N 263
P P + F ARFSC+ R YKY F ++ L++ M A ++GEHDFRNFCK+DA+
Sbjct: 172 PNPPEGFDARFSCVRRHYKYLFLKQYPGGELDIERMSQAAALYLGEHDFRNFCKIDASKQ 231
Query: 264 VHNYKRHVTSFEISPCYISFEGN-QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322
+ NY R + +I I + QL A ++G+AFLWHQVRCM+A+LF++GQ LE +D+
Sbjct: 232 ITNYNRGILHSKI----ICVDPQKQLYAFDLQGTAFLWHQVRCMMAILFLVGQHLEPVDI 287
Query: 323 IESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+ LL+ P KP Y+MA ++PLVL C FD +++
Sbjct: 288 VSELLNVEKNPCKPVYDMASDLPLVLYDCVFDNIQW 323
>gi|254565011|ref|XP_002489616.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
gi|238029412|emb|CAY67335.1| Non-essential tRNA:pseudouridine synthase [Komagataella pastoris
GS115]
Length = 438
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/287 (43%), Positives = 169/287 (58%), Gaps = 19/287 (6%)
Query: 92 RYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA-DKKESHYSRCGRTD 148
R +ALK Y G + G A + PT+E +I +AL + R++ + + + +SRCGRTD
Sbjct: 64 RQIALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSLNPIDCAFSRCGRTD 123
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
KGVS++ QVI + +RS + + E E E+DY+ +LN++LP DIR+ G
Sbjct: 124 KGVSAMNQVIGLNVRSRL--------TPEELESPENDIKELDYINILNQLLPSDIRIHGV 175
Query: 209 S-PAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHN 266
P F ARFSC R YKY F E L+L +M+ A F G HDFRNFCK+D A + N
Sbjct: 176 CLRPPKGFDARFSCRGRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRNFCKVDGAKQMTN 235
Query: 267 YKRHVTSFEISPCYISFEGNQ-LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIES 325
Y R V S +I P EG+ ++G+AFLWHQVRCMVA+L MIGQG ES D++
Sbjct: 236 YTRAVRSSQILP----LEGHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQGFESPDIVSK 291
Query: 326 LLDTNGIPRKPQYNMAPEIPLVLQSCDF-DGLKFTCSLDAGHDLRLH 371
LLD P+KP Y MA +IPLVL C + D + F + +A L+ H
Sbjct: 292 LLDIQSHPQKPVYVMAHDIPLVLYDCIYDDDVNFQPATNANKILKSH 338
>gi|328350038|emb|CCA36438.1| pseudouridylate synthase [Komagataella pastoris CBS 7435]
Length = 422
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 124/287 (43%), Positives = 169/287 (58%), Gaps = 19/287 (6%)
Query: 92 RYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA-DKKESHYSRCGRTD 148
R +ALK Y G + G A + PT+E +I +AL + R++ + + + +SRCGRTD
Sbjct: 48 RQIALKFSYLGWNYQGLAVQREATDLPTIEFKILEALRQCRMIPSLNPIDCAFSRCGRTD 107
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
KGVS++ QVI + +RS + + E E E+DY+ +LN++LP DIR+ G
Sbjct: 108 KGVSAMNQVIGLNVRSRL--------TPEELESPENDIKELDYINILNQLLPSDIRIHGV 159
Query: 209 S-PAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHN 266
P F ARFSC R YKY F E L+L +M+ A F G HDFRNFCK+D A + N
Sbjct: 160 CLRPPKGFDARFSCRGRHYKYVFQDEGLDLESMKKAAPMFEGVHDFRNFCKVDGAKQMTN 219
Query: 267 YKRHVTSFEISPCYISFEGNQ-LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIES 325
Y R V S +I P EG+ ++G+AFLWHQVRCMVA+L MIGQG ES D++
Sbjct: 220 YTRAVRSSQILP----LEGHPGYYVFDLKGTAFLWHQVRCMVAILLMIGQGFESPDIVSK 275
Query: 326 LLDTNGIPRKPQYNMAPEIPLVLQSCDF-DGLKFTCSLDAGHDLRLH 371
LLD P+KP Y MA +IPLVL C + D + F + +A L+ H
Sbjct: 276 LLDIQSHPQKPVYVMAHDIPLVLYDCIYDDDVNFQPATNANKILKSH 322
>gi|19922728|ref|NP_611646.1| CG3045 [Drosophila melanogaster]
gi|7291383|gb|AAF46811.1| CG3045 [Drosophila melanogaster]
gi|16182987|gb|AAL13605.1| GH14326p [Drosophila melanogaster]
gi|220945178|gb|ACL85132.1| CG3045-PA [synthetic construct]
gi|220955082|gb|ACL90084.1| CG3045-PA [synthetic construct]
Length = 499
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 137/341 (40%), Positives = 192/341 (56%), Gaps = 21/341 (6%)
Query: 19 LQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKV 78
L ++V +LEA N +L + L EK DK HD G E K + K +
Sbjct: 31 LIDKVIQLEAYNFQLRNLLQKKLSEK--DK-HDKEYSGLIGNEAEGKVSQVAKTSSKVQK 87
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE 138
K + H KR+V LK+ YFG + GFA + T+ES +F+AL +T L+ +
Sbjct: 88 IRKFDWSSAH--KRHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALART-CLIESRAT 144
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRV 198
S+Y RCGRTDK VS+ QVI+I LRS + + + T + EIDY +LNRV
Sbjct: 145 SNYHRCGRTDKEVSAFCQVISIDLRSK----HPPESQLDPTA----LSSEIDYCGLLNRV 196
Query: 199 LPKDIRVIGWSP--APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNF 256
LPK+I+ + W P +P +SARF C+SR Y+Y+F + +L+++AM A V DFRNF
Sbjct: 197 LPKNIQCVAWMPLRSPV-YSARFDCVSRTYRYYFPKGDLDIAAMRKACDLLVRHADFRNF 255
Query: 257 CKMDAAN-VHNYKRHVTSFEISPCYISFEGN---QLCAIKIRGSAFLWHQVRCMVAVLFM 312
CKMD N V NY R++ S + C + N + ++I+ +AFLWHQ+RC++AVL +
Sbjct: 256 CKMDVHNGVTNYMRNLQSARVEACDQTNHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLL 315
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+GQ E+ VI LLD P KPQY A +PL L CDF
Sbjct: 316 VGQKKENPGVISDLLDVESNPCKPQYTPAIGLPLNLFRCDF 356
>gi|195552156|ref|XP_002076382.1| GD15210 [Drosophila simulans]
gi|194202031|gb|EDX15607.1| GD15210 [Drosophila simulans]
Length = 498
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 194/340 (57%), Gaps = 20/340 (5%)
Query: 19 LQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKV 78
L ++V +LEA N +L + L + + E HD G E + K S KT K
Sbjct: 31 LIDKVVQLEAYNFQLRN---LLQKKLSEHDKHDKEYSGLFGNEADGKV-SQVAKTSNKVQ 86
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE 138
K +M + H KR+V LK+ YFG + GFA + T+ES +F+AL +T L+ +
Sbjct: 87 KIRMFDWSSAH-KRHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRT-CLIESRAT 144
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRV 198
S+Y RCGRTDK VS+ QVI+I LRS + + + T + EIDY +LNRV
Sbjct: 145 SNYHRCGRTDKEVSAFCQVISIDLRSK----HPPESQLDPT----SLSSEIDYCGLLNRV 196
Query: 199 LPKDIRVIGWSP--APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNF 256
LPK+I+ + W P +P +SARF C+SR Y+Y+F + +L+++AM A V DFRNF
Sbjct: 197 LPKNIQCVAWMPLRSPV-YSARFDCVSRSYRYYFPKGDLDIAAMRKACDLLVRHADFRNF 255
Query: 257 CKMDAAN-VHNYKRHVTSFEISPC--YISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
CKMD N V NY R++ S + C + G + ++I+ +AFLWHQ+RC++AVL ++
Sbjct: 256 CKMDVHNGVTNYMRNLQSARVEACDENHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLV 315
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
GQ E VI LLD P KPQY A +PL L CDF
Sbjct: 316 GQKKEKPAVISDLLDVESNPCKPQYTPAIGLPLNLFRCDF 355
>gi|330914180|ref|XP_003296528.1| hypothetical protein PTT_06654 [Pyrenophora teres f. teres 0-1]
gi|311331289|gb|EFQ95392.1| hypothetical protein PTT_06654 [Pyrenophora teres f. teres 0-1]
Length = 599
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 184/360 (51%), Gaps = 99/360 (27%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRLLV-----ADKKESH--- 140
R +ALK Y GQ++ GF N PT+E E++KAL KTRL+ +KES+
Sbjct: 78 RLIALKFAYLGQKYNGFEHHKNNTTPLPTIEEELWKALVKTRLITPIPTAGGEKESYERI 137
Query: 141 ---------------------YSRCGRTDKGVSSVGQVIAIYLRSN---IKECNTNNASM 176
YS+CGRTD+GVS+ GQVI + +RSN K + N ++
Sbjct: 138 DRKTFARWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNKPLPKALQSPNETL 197
Query: 177 GETVQEEQ------------------IEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSA 217
ET ++E + DE+ Y+++LNRVLP DIRV W P P DFSA
Sbjct: 198 -ETNEDENPPSSPASDSNPPPKPFNDLTDELPYIQLLNRVLPPDIRVYAWCPNPPADFSA 256
Query: 218 RFSCISREYKYFF------------------------WREN-LNLSAMESAGKKFVGEHD 252
RFSC R YKYFF RE L+++AM+ VG HD
Sbjct: 257 RFSCKERRYKYFFTNPCFAPVPGSSGRYNTSSTSPQAMREGWLDINAMKQGCAHLVGLHD 316
Query: 253 FRNFCKMDAA-NVHNYKR---HVTSFEISPCYI---------------SFEGNQLCAIKI 293
FRNFCK+DA+ + N++R H E+SP + + E +L + +
Sbjct: 317 FRNFCKIDASKQLTNFQRRIFHADIEEVSPLSVPAFLSHPALSTPGLPASEAPKLYSFTL 376
Query: 294 RGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
GSAFLWHQVR ++AVLF+IGQGLES D+I LLD P +P+Y MA + PLVL C F
Sbjct: 377 HGSAFLWHQVRSLIAVLFLIGQGLESPDIIPKLLDIEANPTRPKYEMASDAPLVLWDCIF 436
>gi|336272077|ref|XP_003350796.1| hypothetical protein SMAC_02466 [Sordaria macrospora k-hell]
Length = 603
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 129/339 (38%), Positives = 177/339 (52%), Gaps = 74/339 (21%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKES------HYSRC 144
R +ALK Y G+ + GF + + P++E E++KAL K+ L+ ++ + YS+C
Sbjct: 79 RLIALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLVFPERPDEVDFGPWEYSKC 138
Query: 145 GRTDKGVSSVGQVIAIYLRSN-------IKECNTNNAS---MGETVQEE----------- 183
GRTD+GVS+ GQVI I +RSN ++ N M E Q+E
Sbjct: 139 GRTDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGGNGGDDVVMTEPQQQEAEKATDVEHQK 198
Query: 184 ----QIEDEIDYVRVLNRVLPKDIRVIGWSPA-PTDFSARFSCISREYKYFFWREN---- 234
I DE+ Y RVLNR+LP DIR++ W+PA P +FSARFSC R+Y+YFF +
Sbjct: 199 PEWDPIADEVPYCRVLNRLLPPDIRIMAWAPALPPNFSARFSCRERQYRYFFTQPAFAPM 258
Query: 235 ----------------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI- 276
L++ M A K F G HDFRNFCK+D + N+ R + +I
Sbjct: 259 PSSLEPLAKKQEKQGWLDIGKMREAAKMFEGVHDFRNFCKIDPGKQITNFSRRIFESDIV 318
Query: 277 -----------------SPCYISFEGN--QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
P EG+ ++ +RGSAFLWHQ+R MVAVLF++GQGL
Sbjct: 319 EVKDVESDLPYLGLPEFQPLAGGSEGSHPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGL 378
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL 356
E +++ LLD PRKP Y MA E+PLVL C F L
Sbjct: 379 EPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIFPKL 417
>gi|336366370|gb|EGN94717.1| hypothetical protein SERLA73DRAFT_114183 [Serpula lacrymans var.
lacrymans S7.3]
Length = 464
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 175/308 (56%), Gaps = 40/308 (12%)
Query: 80 EKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNME-PTVESEIFKALEKTRLLVADK- 136
+K + H +R +A+K Y G + G A +G PTVE +F A KTRL+ DK
Sbjct: 46 QKKTFDFTSHPRRKIAVKFCYSGWEYNGLAFQNGPTPLPTVEEVLFNAFAKTRLVDPDKG 105
Query: 137 -KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVL 195
+ RCGRTD+GVS+ GQV++++ SM + +EE E+ YV +L
Sbjct: 106 LDGCGWERCGRTDRGVSAAGQVVSLW------------PSMRQPSREE-TRSELRYVSIL 152
Query: 196 NRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRN 255
NRVLP IRV+ WSP + FSARF+C SR YKYFF + L+L M+ A + VGEHDFRN
Sbjct: 153 NRVLPPTIRVLAWSPISSTFSARFNCQSRHYKYFFSPQELDLGLMQQAADRLVGEHDFRN 212
Query: 256 FCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
CK+D A + N+ R V +ISP + LC +RG+AFL+HQVR ++A+LF++G
Sbjct: 213 LCKLDPAKQITNFNRRVLLAKISPI-----SDHLCVFDLRGTAFLYHQVRHIMAILFLVG 267
Query: 315 QGLESIDVIESLL----DTNG-----------IPRKPQYNMAPEIPLVLQSCDF--DGLK 357
GLE ++ +LL +TN + RKP+Y MA +PL+L C + ++
Sbjct: 268 TGLEHPSIVSTLLNVGKETNSPSELDNSPLEIVDRKPEYQMADGLPLMLWDCAYSDSDVQ 327
Query: 358 FTCSLDAG 365
+ +D G
Sbjct: 328 WQTDIDTG 335
>gi|302899152|ref|XP_003047991.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256728923|gb|EEU42278.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 530
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 175/330 (53%), Gaps = 66/330 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLL------VADKKESHYSRC 144
R++ALK+ Y G+ + GF P++E E++ AL K L+ V D + YS+C
Sbjct: 55 RFIALKLAYLGKNYGGFEFQAMANAPSIEEELWNALTKACLIFPKDERVVDFECCEYSKC 114
Query: 145 GRTDKGVSSVGQVIAIYLRSN------------IKECNTNNASMGETVQEEQ-------- 184
GRTDKGVS+ GQVI + +RSN + + GE +EE
Sbjct: 115 GRTDKGVSAFGQVIGLRVRSNRPLPKKRRRLSEAGDAMVVDEPTGENGEEEDYIETSSFD 174
Query: 185 -IEDEIDYVRVLNRVLPKDIRVIGWSPAPT-DFSARFSCISREYKYFFWREN-------- 234
I+DE+ Y R+LNRVLP DIR++ W P+P DFSARFSC R+Y+YFF +
Sbjct: 175 PIKDELQYPRLLNRVLPPDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAFTPEPTAG 234
Query: 235 ------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI------SPCYI 281
L++ AM A K++ GEHDFRNFCK+D + N+ R++ +I S
Sbjct: 235 GAKNGWLDIEAMRDAAKRYEGEHDFRNFCKIDPGKQITNFVRNIFEADIKEVRDVSSALP 294
Query: 282 SFEGNQLCA----------------IKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIES 325
G+Q ++RGSAFLWHQ+R MV VLF++GQ LE +VI +
Sbjct: 295 YLSGSQYAPAGGVVDKDAVHPKVYMFQVRGSAFLWHQIRHMVGVLFLVGQRLEKPEVIST 354
Query: 326 LLDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355
LLD P KP Y MA E+PLVL C F G
Sbjct: 355 LLDVAKSPCKPNYVMADEVPLVLWDCIFPG 384
>gi|195488597|ref|XP_002092382.1| GE11697 [Drosophila yakuba]
gi|194178483|gb|EDW92094.1| GE11697 [Drosophila yakuba]
Length = 497
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/297 (42%), Positives = 177/297 (59%), Gaps = 18/297 (6%)
Query: 62 ENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESE 121
E+R T+ KT K K++ + H KR+V LK+ YFG + GFA + T+E+
Sbjct: 71 EDRVTQVA--KTSSKVQKQRKFDWSSAH-KRHVLLKITYFGWDYQGFACQEDSNDTIEAN 127
Query: 122 IFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQ 181
+F+AL +T L+ + S+Y RCGRTDK VS+ QVI+I LRS + + + T
Sbjct: 128 LFRALTRT-CLIESRATSNYHRCGRTDKEVSAFCQVISIDLRSK----HPPESQLDPTA- 181
Query: 182 EEQIEDEIDYVRVLNRVLPKDIRVIGWSP--APTDFSARFSCISREYKYFFWRENLNLSA 239
I EIDY +LNRVLPK+I+ + W P +P +SARF C+SR Y+Y+F + +L+++A
Sbjct: 182 ---ISTEIDYCGLLNRVLPKNIQCVAWMPLRSPV-YSARFDCVSRSYRYYFPKGDLDIAA 237
Query: 240 MESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPC--YISFEGNQLCAIKIRGS 296
M A V DFRNFCKMD N V NY R++ S + C + G + ++I+ +
Sbjct: 238 MSKACDLLVRHADFRNFCKMDVHNGVTNYMRNLQSARVEACDENHTNSGYDMYYLEIQAN 297
Query: 297 AFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
AFLWHQ+RC++AVL ++GQ E+ VI LLD P KPQY A +PL L CDF
Sbjct: 298 AFLWHQIRCIMAVLLLVGQKKENPAVISKLLDVESNPCKPQYTPAIGLPLNLFRCDF 354
>gi|195429481|ref|XP_002062787.1| GK19511 [Drosophila willistoni]
gi|194158872|gb|EDW73773.1| GK19511 [Drosophila willistoni]
Length = 495
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/289 (41%), Positives = 171/289 (59%), Gaps = 19/289 (6%)
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
+G K K + S KR+V LKV YFG + GFA + T+ES +F+AL +T L
Sbjct: 88 SGSKSNKRQRSFDWASAHKRHVLLKVTYFGWDYQGFACQEDSNDTIESNLFRALTRT-CL 146
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIK-ECNTNNASMGETVQEEQIEDEIDY 191
+ + S+Y RCGRTDK VS+ QVI+I LRS E + S+ EIDY
Sbjct: 147 IESRANSNYHRCGRTDKEVSAFCQVISIDLRSKYPAESQLDPTSLAT---------EIDY 197
Query: 192 VRVLNRVLPKDIRVIGWSP--APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVG 249
+LNRVLPK+I+ + W P +P +SARF CI+R Y+Y+F + +L++ AM+ A + V
Sbjct: 198 CGLLNRVLPKNIQCVAWMPLRSPV-YSARFDCIARSYRYYFPKGDLDIEAMQEACQLLVN 256
Query: 250 EHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYIS----FEGNQLCAIKIRGSAFLWHQVR 304
DFRNFCKMD N V ++ R++ + + PC + G + ++I+ +AFLWHQ+R
Sbjct: 257 HADFRNFCKMDVHNGVTSFMRNLQAARVQPCEQTRNEKVSGYAMFYLEIKANAFLWHQIR 316
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
C++A+L ++GQ E +I LLD N P KPQY A +PL L C+F
Sbjct: 317 CIMAILLLVGQRKEKSSIISDLLDVNVNPCKPQYTPAIGLPLNLFHCEF 365
>gi|195346649|ref|XP_002039870.1| GM15659 [Drosophila sechellia]
gi|194135219|gb|EDW56735.1| GM15659 [Drosophila sechellia]
Length = 498
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/281 (42%), Positives = 168/281 (59%), Gaps = 13/281 (4%)
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK 136
KV++K + KR+V LK+ YFG + GFA + T+ES +F+AL +T L+ +
Sbjct: 84 KVQKKRMFDWSSAHKRHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRT-CLIESR 142
Query: 137 KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLN 196
S+Y RCGRTDK VS+ QVI+I LRS + + + T + EIDY +LN
Sbjct: 143 ATSNYHRCGRTDKEVSAFCQVISIDLRSK----HPPESQLDPT----SLSSEIDYCGLLN 194
Query: 197 RVLPKDIRVIGWSPAPTD-FSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRN 255
RVLPK+I+ + W P + +SARF C+SR Y+YFF + +L+++AM A V DFRN
Sbjct: 195 RVLPKNIQCVAWMPLRSSVYSARFDCVSRSYRYFFPKGDLDIAAMRKACDLLVRHADFRN 254
Query: 256 FCKMDAAN-VHNYKRHVTSFEISPC--YISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
FCKMD N V NY R++ S + C + G + ++IR +AFLWHQ+RC++AVL +
Sbjct: 255 FCKMDVHNGVTNYMRNLQSARVEACDENHTNSGYDMYYLEIRANAFLWHQIRCIMAVLIL 314
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+GQ E +I LL+ P KPQY A +PL L CDF
Sbjct: 315 VGQKKEKPAIISDLLNVESNPCKPQYTPAIGLPLNLFRCDF 355
>gi|310794568|gb|EFQ30029.1| tRNA pseudouridine synthase A [Glomerella graminicola M1.001]
Length = 570
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 140/387 (36%), Positives = 202/387 (52%), Gaps = 82/387 (21%)
Query: 92 RYVALKVMYFGQRFYGF--ASDGNMEPTVESEIFKALEKTRLLVADKKES------HYSR 143
R++ALK+ Y G+R+ GF A+ ++ PT+E E++ AL K L+ + + YS+
Sbjct: 92 RFIALKLAYLGKRYGGFEYAASASL-PTIEGELWNALTKACLIFPEDPDVVNFDCCEYSK 150
Query: 144 CGRTDKGVSSVGQVIAIYLRSN------------IKECNTNNASMGETVQE--------- 182
CGRTD+GVS+ GQVI + +RSN E + +M T +E
Sbjct: 151 CGRTDRGVSAFGQVIGLRVRSNKPLPKKPEEEAAAAEAEEGDTAMAGTAEEEEKKKRQEQ 210
Query: 183 ------------EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT-DFSARFSCISREYKYF 229
+ I DEI YV+VLNR+LP DIR+ W P+P DFSARFSC R+Y+YF
Sbjct: 211 TQKQKKKPEKEWDDINDEIQYVKVLNRLLPDDIRITAWCPSPPPDFSARFSCEERQYRYF 270
Query: 230 F------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKR 269
F RE L++ AM A ++FVG+HDFRNFCK+D + + N++R
Sbjct: 271 FTQPAFTPTAATSDGTPSGLREGYLDIEAMNEAAQRFVGDHDFRNFCKVDGSKQITNFER 330
Query: 270 HVTSFEISPCYI-------------SFEGNQLCAI---KIRGSAFLWHQVRCMVAVLFMI 313
+ FE S + + +G QL + IRG+AFLWHQ+R MV +LF++
Sbjct: 331 RM--FEASVGEVRDVGSALPYLGCSAADGGQLPKVYSFNIRGTAFLWHQIRHMVTILFLV 388
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLR 373
GQ LE +++ LLD PRKP Y++A E PLVL +C F G + + +
Sbjct: 389 GQRLERPELVTELLDVEKSPRKPNYDLAHETPLVLWNCVFPGDPESRTTAGAEGALRWVH 448
Query: 374 NECQVYQLQAAIFHEALLNCLPLANGL 400
E V + A + E ++ L LAN L
Sbjct: 449 GEADVVESLWAHYREKKMDEL-LANRL 474
>gi|167377399|ref|XP_001734387.1| tRNA pseudouridine synthase [Entamoeba dispar SAW760]
gi|165904128|gb|EDR29463.1| tRNA pseudouridine synthase, putative [Entamoeba dispar SAW760]
Length = 366
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 173/300 (57%), Gaps = 30/300 (10%)
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGF-------ASDGNMEP-----TVES 120
T ++K+K N++ R++A+ + Y G + G +D + T+E
Sbjct: 17 TQSSQLKKKKDFNFNNYKTRHIAIHLTYIGIDYNGIQCTLLNDVTDSTFDSVVNDGTIEY 76
Query: 121 EIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETV 180
++FKAL KTRL + + K+ Y+RCGRTDKGVS+ GQV+ +++RSN+K+ ET+
Sbjct: 77 QLFKALFKTRL-IQNTKDCKYNRCGRTDKGVSAFGQVVDLWVRSNLKD---------ETI 126
Query: 181 QEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAM 240
+ E E+DY R+LN +LP DIR +GW P DF++RFSC SR Y Y+F + ++ M
Sbjct: 127 LYTKREGELDYCRMLNGLLPIDIRCLGWCGVPDDFNSRFSCQSRTYHYYFDPSSYDVPKM 186
Query: 241 ESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLW 300
+ A + F+GEHDF NFCK D A H +R V SFE+ E N L + G+AF+W
Sbjct: 187 KEAAQLFLGEHDFTNFCKKDPAVPHCIRR-VNSFEVE------EINGLSRFVVCGTAFVW 239
Query: 301 HQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTC 360
HQVR MV LF IGQG + I+ LLD + + AP PLVL C +D ++F C
Sbjct: 240 HQVRYMVGALFAIGQGANP-ESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKYDRVEFLC 298
>gi|260942163|ref|XP_002615380.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
gi|238850670|gb|EEQ40134.1| hypothetical protein CLUG_04262 [Clavispora lusitaniae ATCC 42720]
Length = 447
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 138/367 (37%), Positives = 198/367 (53%), Gaps = 50/367 (13%)
Query: 2 SEAKQELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVE 61
S +K +LI +Q +LEA +N K+ + AK SK E
Sbjct: 22 SWSKTQLIKRIQ-ELEAGENAPKDEDPQAAKEPSK------------------------E 56
Query: 62 ENRKTESG-GCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYG--FASDGNMEPTV 118
KT+ G G+KK K S H R+VA + Y G + G F ++ PTV
Sbjct: 57 PQPKTKPGKTAAAGQKKRKFDFS----KHNTRFVAFRFAYMGWNYNGLNFQNEPTPLPTV 112
Query: 119 ESEIFKALEKTRLLV-ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMG 177
E EI +A+ K +L+ AD ++SRCGRTDKGVS++ QVI++ +RS + S
Sbjct: 113 EEEILQAMTKAKLVPEADPASCNFSRCGRTDKGVSALNQVISLDVRSAL--------SKE 164
Query: 178 ETVQEEQIEDEIDYVRVLNRVLPKDIRVIG--WSPAPTDFSARFSCISREYKYFFWRENL 235
E +E+ E+ Y+ +LN +LP DIR+ P P +F+ARFSC R YKY F + +L
Sbjct: 165 EHADKEKDVKELPYLTILNALLPPDIRITAVCLRPPP-NFNARFSCKYRHYKYLFKKTDL 223
Query: 236 NLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIR 294
++ M+ A K+ G HDFRNFCK+D + + N+ R V S I + ++
Sbjct: 224 DVDLMQEAALKYEGPHDFRNFCKIDGSKQITNHCREVYS-----ARIEHFKDDFYVFDLK 278
Query: 295 GSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G+AFLWHQVRCMVAVLF +GQ LES +++ LL+ + P KP Y MA ++PLVL C F
Sbjct: 279 GTAFLWHQVRCMVAVLFSVGQKLESPSIVDDLLNVSKFPSKPIYEMANDVPLVLYDCVFP 338
Query: 355 GLKFTCS 361
+++ S
Sbjct: 339 EMEWLTS 345
>gi|346324635|gb|EGX94232.1| pseudouridylate synthase 3 [Cordyceps militaris CM01]
Length = 547
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 134/349 (38%), Positives = 189/349 (54%), Gaps = 71/349 (20%)
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGF--ASDGNMEPTVESEIFKALEKTR 130
T + KV+ KM + + R++ALK+ Y G+ + GF ++G+ +P++E E++ AL K
Sbjct: 49 TTRPKVRRKMDPS--KYSTRFIALKLAYLGKNYGGFEFQAEGH-QPSIEEELWIALTKAC 105
Query: 131 LL------VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSN---IKECN-TNNASMGETV 180
L+ + D YS+CGRTDKGVS+ GQVI+I +RSN KE T + G+
Sbjct: 106 LIFPENEKIVDFNICEYSKCGRTDKGVSAFGQVISIRVRSNRPLPKEPKPTVEGAAGQDT 165
Query: 181 QE----------EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT-DFSARFSCISREYKYF 229
++ + I DEI Y VLNR+LP DIR++ W P+P +FSARFSC R+Y+YF
Sbjct: 166 EQQEPEEEEKPFDPIADEIPYPMVLNRLLPPDIRILAWCPSPPPNFSARFSCRERQYRYF 225
Query: 230 F---------------------WRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNY 267
F W L++ AM A K+F G+ DFRN CK+D A + N+
Sbjct: 226 FTQPVFSPEPSYGTGTGTTHPGW---LDIDAMRDAAKRFEGDQDFRNLCKIDPAKLITNW 282
Query: 268 KRHVTSFEI--------SPCYISFEGNQLCAI------------KIRGSAFLWHQVRCMV 307
R + +I + Y++ G A+ +RGSAFLWHQ+R MV
Sbjct: 283 SRTIFESDIVEVRDAASALPYVTAAGFAPSALVGTSSFPKVYYFHVRGSAFLWHQIRHMV 342
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL 356
AVLF++G LE ++ LLD N PRKP Y MA E+PLVL C F L
Sbjct: 343 AVLFLVGLRLEKPSIVSELLDVNKYPRKPGYTMADEVPLVLWDCLFPDL 391
>gi|452844696|gb|EME46630.1| hypothetical protein DOTSEDRAFT_22677 [Dothistroma septosporum
NZE10]
Length = 667
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 173/332 (52%), Gaps = 61/332 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGN---MEPTVESEIFKALEKTRLLVADKKESH-------- 140
R +ALK Y G + GF N PTVE E++KAL+KTRL+ K
Sbjct: 65 RLIALKFAYLGGNYNGFEHHANNITPLPTVEEELWKALKKTRLIFPTLKPGQSEEGVSWE 124
Query: 141 ---YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASM----------GETVQEEQIE- 186
YS+CGRTD+GVS+ GQVI I +RS + A+ E +E IE
Sbjct: 125 GCDYSKCGRTDRGVSAFGQVIGIRVRSARPQVQPARAAAEDGADSPMPNAEQNEEPAIEF 184
Query: 187 ----DEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFFWREN------- 234
DE+ Y++++NRVLP DIR++ W P P +FSARF+C R Y+YFF
Sbjct: 185 NSVCDELPYIQLINRVLPSDIRILAWCPHTPENFSARFNCKERRYRYFFTNPAFIPLPGS 244
Query: 235 -------------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCY 280
LN+ AME A K + G HDFRNFCK+D + + N++R + +
Sbjct: 245 KGVAEDGSPDEGCLNVVAMEEAAKMYEGLHDFRNFCKVDPSKQISNFERRIFHAGVHEVN 304
Query: 281 ISFEGN-------QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
+G +L ++RGSAFLWHQVR +VA+LF++GQG E +++ LLD + P
Sbjct: 305 AGVKGESAASTSPKLYYFEVRGSAFLWHQVRHLVAILFLVGQGHEKPSIVQDLLDIHKTP 364
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
+P Y MA + PLVL C F LDAG
Sbjct: 365 ARPAYEMASDAPLVLWECIFPD---PAKLDAG 393
>gi|194882124|ref|XP_001975163.1| GG20714 [Drosophila erecta]
gi|190658350|gb|EDV55563.1| GG20714 [Drosophila erecta]
Length = 497
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 194/340 (57%), Gaps = 21/340 (6%)
Query: 19 LQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKV 78
L ++V +LEA N +L + L +K+ ++ D +E+ + + K KV
Sbjct: 31 LIDKVVQLEAYNFQLRNLLQ----KKLTEQ--DNLEEYSAVFGNEAKDGVTQVAKSSSKV 84
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE 138
+++ + KR+V LK+ YFG + GFA + T+ES +F+AL +T L+ +
Sbjct: 85 QKQRKFDWSSAHKRHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALSRT-CLIDSRAN 143
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRV 198
S+Y RCGRTDK VS+ QVI+I LRS ++ + T + EIDY +LNRV
Sbjct: 144 SNYHRCGRTDKEVSAFCQVISIDLRSK----HSPEFQLDPTA----LSTEIDYCGLLNRV 195
Query: 199 LPKDIRVIGWSP--APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNF 256
LPK+I+ + W P +P +SARF C+SR Y+Y+F + +L++ AM A DFRNF
Sbjct: 196 LPKNIQCVAWMPLRSPV-YSARFDCVSRSYRYYFPKGDLDIGAMSQACDLLERHADFRNF 254
Query: 257 CKMDAAN-VHNYKRHVTSFEISPC--YISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
CKMD N V NY R++ S + C + G + ++I+ +AFLWHQ+RC++AVL ++
Sbjct: 255 CKMDVHNGVTNYMRNLQSARVVACDENHTNSGYDMYYLEIQANAFLWHQIRCIMAVLLLV 314
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
GQ ES VI LLD P KPQY+ A +PL L CDF
Sbjct: 315 GQKKESPTVISELLDVESNPCKPQYSPAIGLPLNLFHCDF 354
>gi|344301779|gb|EGW32084.1| hypothetical protein SPAPADRAFT_61166 [Spathaspora passalidarum
NRRL Y-27907]
Length = 411
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/277 (41%), Positives = 163/277 (58%), Gaps = 26/277 (9%)
Query: 92 RYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVADKKES-HYSRCGRTD 148
R+VA++ Y G + G A + PTVE I AL K +L+ + +SRCGRTD
Sbjct: 45 RFVAIRFAYLGWNYNGLAYQKEETPLPTVEGTILDALHKAKLIKEPTVDCCKFSRCGRTD 104
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED-----EIDYVRVLNRVLPKDI 203
KGVS++ QVI++ +RS++ EEQ + E+ Y +LN +LP DI
Sbjct: 105 KGVSAMNQVISLNVRSSL-------------TPEEQADSSNDVKEVKYATILNSLLPPDI 151
Query: 204 RVIGWS-PAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA 262
R+ S P F ARFSC SR YKY F ++ L++ AM A + + G HDFRNFCK+D +
Sbjct: 152 RITAISLRPPPKFDARFSCESRHYKYLFLKQQLDIDAMNQAAQLYEGTHDFRNFCKVDGS 211
Query: 263 -NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESID 321
+ Y+R + S +I P + + C ++GSAFLWHQVRCMVAVLF++GQGLE +
Sbjct: 212 KQISRYERDIYSAKIMP--VDGIPDMYC-FDLKGSAFLWHQVRCMVAVLFLVGQGLEPVS 268
Query: 322 VIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
++ L+D + P KPQ+ MA + PLVL C F +++
Sbjct: 269 IVSDLMDVDKFPTKPQFEMANDAPLVLYDCTFPEMEW 305
>gi|317137489|ref|XP_003190065.1| pseudouridylate synthase 3 [Aspergillus oryzae RIB40]
Length = 617
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 186/367 (50%), Gaps = 105/367 (28%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G ++GN+ P T+E E++KAL KTRL+ + E+
Sbjct: 109 RFIALKFAYLGQRYNGLEHANGNVTPLPTIEEEMWKALRKTRLIFPENGEADGFEDTRGP 168
Query: 140 -------------HYSRCGRTDKGVSSVGQVIAIYLRS------NIKECNTNNASMGETV 180
YS+ GRTD+GVS+ GQVI + +RS ++ + + ++ + +T
Sbjct: 169 RELKPYLINWEGYQYSKAGRTDRGVSAFGQVIGLRVRSARPKRDDVAQADPSSDTTMQTG 228
Query: 181 QE------------EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD-FSARFSCISREYK 227
+E + I DE+ YV +LNRVLP+DIRV+ W P P + F ARFSC R YK
Sbjct: 229 EEASALDDTAQDNWDDIADELPYVSILNRVLPEDIRVLAWCPHPPEGFDARFSCRERHYK 288
Query: 228 YFF----------------------------WREN-LNLSAMESAGKKFVGEHDFRNFCK 258
YFF +RE L++ AM A K F G HDFRNFCK
Sbjct: 289 YFFTQPAFSPTPGPLGFTSRANNKAGDSRAKYREGWLDIEAMREAAKYFEGVHDFRNFCK 348
Query: 259 MDAA-NVHNYKRHVTSFEI-------SPC-YISFEG-----------------------N 286
+D + + N++R + +I SP Y+S G +
Sbjct: 349 LDTSKQIENFERVIYHSDIELLDPRSSPLGYVSQPGFQALEDPAAQQTPGSPESPSPTPS 408
Query: 287 QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPL 346
Q+ +RGSAFLWHQVR MV +LF++GQGLE ++ LLD PRKP Y MA + PL
Sbjct: 409 QVYVFNLRGSAFLWHQVRHMVGILFLVGQGLEPPTIVPDLLDITKNPRKPTYEMASDAPL 468
Query: 347 VLQSCDF 353
VL +C F
Sbjct: 469 VLWNCVF 475
>gi|238489663|ref|XP_002376069.1| pseudouridylate synthase 3 [Aspergillus flavus NRRL3357]
gi|220698457|gb|EED54797.1| pseudouridylate synthase 3 [Aspergillus flavus NRRL3357]
Length = 656
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/367 (36%), Positives = 186/367 (50%), Gaps = 105/367 (28%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G ++GN+ P T+E E++KAL KTRL+ + E+
Sbjct: 148 RFIALKFAYLGQRYNGLEHANGNVTPLPTIEEEMWKALRKTRLIFPENGEADGFEDTRGP 207
Query: 140 -------------HYSRCGRTDKGVSSVGQVIAIYLRS------NIKECNTNNASMGETV 180
YS+ GRTD+GVS+ GQVI + +RS ++ + + ++ + +T
Sbjct: 208 RELKPYLINWEGCQYSKAGRTDRGVSAFGQVIGLRVRSARPKRDDVAQADPSSDTTMQTG 267
Query: 181 QE------------EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD-FSARFSCISREYK 227
+E + I DE+ YV +LNRVLP+DIRV+ W P P + F ARFSC R YK
Sbjct: 268 EEASALDDAAQDNWDDIADELPYVSILNRVLPEDIRVLAWCPHPPEGFDARFSCRERHYK 327
Query: 228 YFF----------------------------WREN-LNLSAMESAGKKFVGEHDFRNFCK 258
YFF +RE L++ AM A K F G HDFRNFCK
Sbjct: 328 YFFTQPAFSPTPGPLGFTSRANNKAGDSRAKYREGWLDIEAMREAAKYFEGVHDFRNFCK 387
Query: 259 MDAA-NVHNYKRHVTSFEI-------SPC-YISFEG-----------------------N 286
+D + + N++R + +I SP Y+S G +
Sbjct: 388 LDTSKQIENFERVIYHSDIELLDPRSSPLGYVSQPGFQALEDPAAQQTPGSPESPSPTPS 447
Query: 287 QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPL 346
Q+ +RGSAFLWHQVR MV +LF++GQGLE ++ LLD PRKP Y MA + PL
Sbjct: 448 QVYVFNLRGSAFLWHQVRHMVGILFLVGQGLEPPTIVPDLLDITKNPRKPTYEMASDAPL 507
Query: 347 VLQSCDF 353
VL +C F
Sbjct: 508 VLWNCVF 514
>gi|406603476|emb|CCH45032.1| putative tRNA pseudouridine synthase [Wickerhamomyces ciferrii]
Length = 412
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 175/311 (56%), Gaps = 32/311 (10%)
Query: 62 ENRKTESGGC--KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPT 117
E K E G K +K K+ + H R++ALK Y G + G A + PT
Sbjct: 27 ETPKNEQNGTIIKRDQKPQKKSKPFDFSKHHTRFIALKFSYLGWNYNGLAIQKEPTPLPT 86
Query: 118 VESEIFKALEKTRLLVA-DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASM 176
VE I +AL K +L+ + + ++SRCGRTDKGVS++ QVI++ +RSN+
Sbjct: 87 VEGTIIEALNKCKLIPSLNPGNFNFSRCGRTDKGVSALNQVISLKVRSNL---------- 136
Query: 177 GETVQEEQIED-----EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYF 229
EEQ++ E DY+ +LN +LP DI++ I P P F ARFSC SR YKY
Sbjct: 137 ---TPEEQLDPNLDSKEFDYINILNGILPSDIKIHEISLRP-PQGFDARFSCTSRHYKYL 192
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F ++ L++ M+ A K + G HDFRNFCK+D + + NY+R + +I GN L
Sbjct: 193 FHQQGLDIELMQKAAKLYEGSHDFRNFCKIDGSKQISNYERTILKSQILDL-----GNGL 247
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
+ GSAFLWHQVR MVA+LF++GQ LES ++ L++ P +P ++M +IPL+L
Sbjct: 248 YCFDLEGSAFLWHQVRNMVAILFLVGQKLESPGIVTQLMNIQETPTRPLFDMGSDIPLIL 307
Query: 349 QSCDFDGLKFT 359
C F +++
Sbjct: 308 YDCKFPEMEWV 318
>gi|396496281|ref|XP_003844707.1| similar to pseudouridylate synthase 3 [Leptosphaeria maculans JN3]
gi|312221288|emb|CBY01228.1| similar to pseudouridylate synthase 3 [Leptosphaeria maculans JN3]
Length = 597
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/443 (33%), Positives = 217/443 (48%), Gaps = 110/443 (24%)
Query: 39 LCRCEKIEDKVHDG-VEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLN--HHFKRYVA 95
+ R +++E+++ + +D +++V E++ T G +K + + + R +A
Sbjct: 14 IARIQELENQLKNPEKQDHSSIVPESQATCDDAKTLGFRKAPKPAPKAFDASKYSTRLIA 73
Query: 96 LKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRLL-------------------- 132
LK Y GQR+ GF N PT+E E++KAL KTRL+
Sbjct: 74 LKFAYLGQRYNGFEHHKNNSTPLPTIEEELWKALVKTRLINPIPTQGDATGYSRVDRKTF 133
Query: 133 VADKKES--------HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNA---------- 174
A +E YS+CGRTD+GVS+ GQVI + +RSN T A
Sbjct: 134 AAWDREGADVNWEGCEYSKCGRTDRGVSAFGQVIGVRVRSNRPLPKTAKAQDELSASEQA 193
Query: 175 -------SMGETVQEEQ------IEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFS 220
SM ++ E + + DE+ Y++ LNRVLP DIRV W P P DFSARFS
Sbjct: 194 KTSEEPISMADSEPETEGKSFNDLTDELPYIQHLNRVLPPDIRVYAWCPNPPPDFSARFS 253
Query: 221 CISREYKYFFW--------------------------REN-LNLSAMESAGKKFVGEHDF 253
C R YKYFF RE L++ AM ++ +G HDF
Sbjct: 254 CKERRYKYFFTNPSFAPVPGSSGVYNTHTSSPTATRTREGWLDIEAMRKGCQQLIGLHDF 313
Query: 254 RNFCKMDAA-NVHNYKR---HVTSFEISPCYI-SF-----------------EGNQLCAI 291
RNFCK+DA+ + N++R H E+SP I SF + +L +
Sbjct: 314 RNFCKIDASKQLSNFQRRIFHADIEEVSPLSIPSFLSHPALQSPWANSPAVEQQPKLYSF 373
Query: 292 KIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSC 351
+ GSAFLWHQVR ++AVLF+IGQGLE +I SLLD + P +P+Y MA + PLVL C
Sbjct: 374 TLHGSAFLWHQVRSLIAVLFLIGQGLEPPSLISSLLDISANPTRPKYEMASDAPLVLWDC 433
Query: 352 DF---DGLKFTCSLDAGHDLRLH 371
F D ++ + + G++ RL+
Sbjct: 434 IFPHADEVEASEDREKGYEDRLN 456
>gi|322709808|gb|EFZ01383.1| putative pseudouridine synthase 3 [Metarhizium anisopliae ARSEF 23]
Length = 564
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/346 (37%), Positives = 184/346 (53%), Gaps = 79/346 (22%)
Query: 92 RYVALKVMYFGQRFYGF--ASDGNMEPTVESEIFKALEKTRLLVADKKE------SHYSR 143
R++ALK+ Y G+ + GF + GN +P++E E++ AL + L+ + + YS+
Sbjct: 79 RFIALKLAYLGKNYGGFEFQAMGN-QPSIEEELWNALTRACLIFPEDERIVQFDCCEYSK 137
Query: 144 CGRTDKGVSSVGQVIAIYLRSN----IKECNTNNASMGETVQEE---------------- 183
CGRTD+GVS+ GQVI + +RSN K T+ A+ + +
Sbjct: 138 CGRTDRGVSAFGQVIGLKVRSNRPLPKKRAETDVAAAEDIALADADPQGVKQAEEEVEAQ 197
Query: 184 -------QIEDEIDYVRVLNRVLPKDIRVIGWSPAPT-DFSARFSCISREYKYFFWREN- 234
I DE+ Y R+LNR+LP DIR++ W P+P DFSARFSC R+Y+YFF +
Sbjct: 198 EEDKPFDDIHDELCYPRILNRLLPDDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAF 257
Query: 235 --------------------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTS 273
L++ AM A K++ GEHDFRNFCK+D A + N+ R +
Sbjct: 258 APDPTSLDLSGASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQITNFHRRIFE 317
Query: 274 FEI--------------SPCYIS--FEGN----QLCAIKIRGSAFLWHQVRCMVAVLFMI 313
+I +P + S EG+ ++ +RGSAFLWHQ+R MVAVLF++
Sbjct: 318 SDIVEVQGAGSVMPYLQTPGFSSPGLEGSGPYPKVYYFHVRGSAFLWHQIRHMVAVLFLV 377
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359
GQGLES VI LLDT P +P Y MA E+PLVL C F L T
Sbjct: 378 GQGLESPTVISELLDTAKNPGRPSYVMADEVPLVLWDCIFPDLSKT 423
>gi|118350997|ref|XP_001008777.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila]
gi|89290544|gb|EAR88532.1| tRNA pseudouridine synthase A family protein [Tetrahymena
thermophila SB210]
Length = 481
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/277 (40%), Positives = 160/277 (57%), Gaps = 30/277 (10%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+++ ALK+ Y G + G A + TVE ++FKALEKT L+ ++ +++R GRTDKG
Sbjct: 111 QQHYALKMSYVGINYQGLAYQQETDNTVEEQLFKALEKT-TLIKNRDNCNFTRSGRTDKG 169
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
VS++GQVI I LR++IK +GE + DEID DIR++G S
Sbjct: 170 VSALGQVIGITLRTSIK--------IGENI------DEID-----------DIRILGCSK 204
Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRH 270
F+ARF C R YKY+F+ +++ M+ A F+GEHDFRNFCK+D NY R
Sbjct: 205 VDPAFNARFDCQKRIYKYYFFENQMDIQRMKEAANLFLGEHDFRNFCKIDVLQTLNYVRI 264
Query: 271 VTSFEISPCYISF----EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
+ +I +F ++L I+GSAFLWHQ+R M+A+LF++G+ E ++ L
Sbjct: 265 IYQLDIEEVQANFGTLDPRSKLYVATIQGSAFLWHQIRNMMAILFLVGRKQEEPSIVTEL 324
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
LD P KP Y MAP+ PLVL C ++ + F S D
Sbjct: 325 LDIQKNPSKPNYEMAPDYPLVLFDCLYNNVSFNYSSD 361
>gi|171689408|ref|XP_001909644.1| hypothetical protein [Podospora anserina S mat+]
gi|170944666|emb|CAP70777.1| unnamed protein product [Podospora anserina S mat+]
Length = 635
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 172/325 (52%), Gaps = 69/325 (21%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVA------DKKESHYSRC 144
R +ALK+ Y G+ + GF G P++E E++KAL K L+ D YS+C
Sbjct: 131 RLIALKLSYLGKNYGGFEHSGYSNVPSIEEELWKALVKGCLITPADPSKIDFAPFEYSKC 190
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQE---------------------- 182
GRTD+GVS+ GQVI+I +RSN + + + V E
Sbjct: 191 GRTDRGVSAFGQVISIRVRSNRPPSKSEQPAEEDVVMEGTPEQNNTPQLPGKKQQQNPQK 250
Query: 183 --EQIEDEIDYVRVLNRVLPKDIRVIGWSPA-PTDFSARFSCISREYKYFFWREN----- 234
E I DEI+Y +VLNR+LP DI+V+ W+P P FSARFSC R+Y+YFF +
Sbjct: 251 EWEDIVDEINYPKVLNRLLPPDIKVLAWAPTLPEGFSARFSCYERQYRYFFTNPSMAPTL 310
Query: 235 ---------LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFE--ISPCYIS- 282
L+++AM+ A K F G HDFRNFCK+D + +TSF+ I C I
Sbjct: 311 LAPGEKSGWLDIAAMKKAAKYFEGLHDFRNFCKVDGG------KQITSFQRRIFECDIEE 364
Query: 283 FEGNQLCAIK--------------IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLD 328
EG L + +RGSAFLWHQ+R MVA++F +GQGLE +V+ LLD
Sbjct: 365 VEGQDLGVVNFWGGEKKGKVYYFHVRGSAFLWHQIRHMVAIVFNVGQGLERPEVVRELLD 424
Query: 329 TNGIPRKPQYNMAPEIPLVLQSCDF 353
RKP Y MA E+PLVL C F
Sbjct: 425 VERNGRKPGYIMAEEVPLVLWDCVF 449
>gi|322698560|gb|EFY90329.1| putative pseudouridine synthase 3 [Metarhizium acridum CQMa 102]
Length = 564
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 182/346 (52%), Gaps = 79/346 (22%)
Query: 92 RYVALKVMYFGQRFYGF--ASDGNMEPTVESEIFKALEKTRLLVADKKE------SHYSR 143
R++ALK+ Y G+ + GF + GN +P++E E++ AL + L+ + + YS+
Sbjct: 79 RFIALKLAYLGKNYGGFEFQAMGN-QPSIEEELWNALTRACLIFPEDERIVQFNCCEYSK 137
Query: 144 CGRTDKGVSSVGQVIAIYLRSN---IKECNTNNASMGETVQE------------------ 182
CGRTD+GVS+ GQVI + +RSN K + + + E +
Sbjct: 138 CGRTDRGVSAFGQVIGLKVRSNRPLPKNGSKTDVAAAEDIAMAEAGPQGGKQAEEDVEVQ 197
Query: 183 ------EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT-DFSARFSCISREYKYFFWREN- 234
+ I DE+ Y R+LNR+LP DIR++ W P+P DFSARFSC R+Y+YFF +
Sbjct: 198 EEEKPFDDIHDELCYPRILNRLLPDDIRILAWCPSPPPDFSARFSCRERQYRYFFTQPAF 257
Query: 235 --------------------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTS 273
L++ AM A K++ GEHDFRNFCK+D A + N++R +
Sbjct: 258 APDPASLDLSGASKPLKAGWLDIDAMRDAAKRYEGEHDFRNFCKIDPAKQITNFRRRIFE 317
Query: 274 FEI------------------SPCYISFEGN--QLCAIKIRGSAFLWHQVRCMVAVLFMI 313
+I SP + G ++ +RGSAFLWHQ+R MVA+LF++
Sbjct: 318 SDIVEVQDASSVMPYLQTSGFSPPGLQGSGPYPKVYYFHVRGSAFLWHQIRHMVAILFLV 377
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359
GQGLES V+ LLDT P +P Y MA E+PLVL C F L T
Sbjct: 378 GQGLESPTVVSELLDTAKNPGRPSYVMADEVPLVLWDCIFPDLSET 423
>gi|425781472|gb|EKV19436.1| Pseudouridylate synthase 3 [Penicillium digitatum Pd1]
Length = 616
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 138/367 (37%), Positives = 181/367 (49%), Gaps = 94/367 (25%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLL---------VADKKES 139
R++ALK Y GQ + G ++GN P TVE ++KAL +TRL+ D++E
Sbjct: 116 RFIALKFAYLGQAYNGLEHTNGNTTPLPTVEEILWKALRRTRLISPETTSDMEPTDREER 175
Query: 140 -------------HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNA--------SMGE 178
YS+ GRTDKGVS+ GQVI + +RS T A S+
Sbjct: 176 VPMRPYHLHWDGCDYSKAGRTDKGVSAFGQVIGLRVRSQRPVPKTPAAGDDAMNVDSVST 235
Query: 179 TVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF------- 230
+ + + DE++Y+ VLNRVLP+DIRV+ W P P F ARFSC R YKYFF
Sbjct: 236 EKEWDDVADEMNYINVLNRVLPEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFTP 295
Query: 231 --------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDA-ANVHNYK 268
RE L++ AM A K F G HDFRNFCK+D + N++
Sbjct: 296 TPGSVGFQNRAQNGNGPRSELREGWLDIEAMREAAKHFEGLHDFRNFCKLDTNKQIDNFE 355
Query: 269 R--HVTSFE-----------------------------ISPCYISFEGNQLCAIKIRGSA 297
R H +S E +SP IS Q+ + GSA
Sbjct: 356 RIIHHSSIEAVNAKVNPVGYVGQPGFQAKEGCVPDPDLLSPDMISQNVPQVYTFNLHGSA 415
Query: 298 FLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLK 357
FLWHQVR MVA+LF++GQGLES ++ LLD PRKP Y+MA + PLVL C F L+
Sbjct: 416 FLWHQVRHMVAILFLVGQGLESPSIVPELLDITKNPRKPTYSMADDAPLVLWDCIFPDLE 475
Query: 358 FTCSLDA 364
LD+
Sbjct: 476 SGSHLDS 482
>gi|149237835|ref|XP_001524794.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451391|gb|EDK45647.1| tRNA pseudouridine synthase 3 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 491
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/277 (43%), Positives = 166/277 (59%), Gaps = 26/277 (9%)
Query: 92 RYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
R+VA+K Y G + G F +D PTVE I KAL K +L+ +E YS+CGRTDK
Sbjct: 129 RFVAIKFAYLGWNYNGLAFQNDPTPLPTVEEIILKALAKVKLIREPIEEVEYSKCGRTDK 188
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE----DEIDYVRVLNRVLPKDIRV 205
GVS++ QVI+I LRSN+ T QE+Q E+DY V+N LP DI+V
Sbjct: 189 GVSAMNQVISIKLRSNL------------TPQEQQDPAFDAKEVDYFTVINANLPADIKV 236
Query: 206 --IGWSPAPTDFSARFSCISREYKYFFWR-ENLNLSAMESAGKKFVGEHDFRNFCKMDAA 262
I P P +F ARFSC R Y+Y F + L++ M A + + G HDFRNFCK+D +
Sbjct: 237 HAICLRP-PENFDARFSCKERHYRYLFRKTSTLDIDLMAQAAEYYEGLHDFRNFCKLDGS 295
Query: 263 -NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESID 321
+ ++ R + +I P + +GN C + G+AFLWHQVRCMVA+LF++GQ LES +
Sbjct: 296 KQLTSFVRDIRRSKIIP--LDSDGNLYC-FDLIGNAFLWHQVRCMVAILFLVGQKLESPE 352
Query: 322 VIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+++ L+D P KP Y MA +IPLVL C F +++
Sbjct: 353 IVKDLMDVTKFPTKPMYEMANDIPLVLYDCVFPEMEW 389
>gi|425778119|gb|EKV16263.1| Pseudouridylate synthase 3 [Penicillium digitatum PHI26]
Length = 616
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 138/367 (37%), Positives = 181/367 (49%), Gaps = 94/367 (25%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLL---------VADKKES 139
R++ALK Y GQ + G ++GN P TVE ++KAL +TRL+ D++E
Sbjct: 116 RFIALKFAYLGQAYNGLEHTNGNTTPLPTVEEILWKALRRTRLISPETTSDMEPTDREER 175
Query: 140 -------------HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNA--------SMGE 178
YS+ GRTDKGVS+ GQVI + +RS T A S+
Sbjct: 176 VPMRPYHLHWDGCDYSKAGRTDKGVSAFGQVIGLRVRSQRPVPKTPAAGDDAMNVDSVST 235
Query: 179 TVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF------- 230
+ + + DE++Y+ VLNRVLP+DIRV+ W P P F ARFSC R YKYFF
Sbjct: 236 EKEWDDVADEMNYINVLNRVLPEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFTP 295
Query: 231 --------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDA-ANVHNYK 268
RE L++ AM A K F G HDFRNFCK+D + N++
Sbjct: 296 TPGSVGFQNRAQNGNGPRSELREGWLDIEAMREAAKHFEGLHDFRNFCKLDTNKQIDNFE 355
Query: 269 R--HVTSFE-----------------------------ISPCYISFEGNQLCAIKIRGSA 297
R H +S E +SP IS Q+ + GSA
Sbjct: 356 RIIHHSSIEAVNAKVNPVGYVGQPGFQAKEGCVPDPDLLSPDMISQNVPQVYTFNLHGSA 415
Query: 298 FLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLK 357
FLWHQVR MVA+LF++GQGLES ++ LLD PRKP Y+MA + PLVL C F L+
Sbjct: 416 FLWHQVRHMVAILFLVGQGLESPSIVPELLDITKNPRKPTYSMADDAPLVLWDCIFPDLE 475
Query: 358 FTCSLDA 364
LD+
Sbjct: 476 SGSHLDS 482
>gi|453086473|gb|EMF14515.1| pseudouridine synthase [Mycosphaerella populorum SO2202]
Length = 546
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 132/373 (35%), Positives = 190/373 (50%), Gaps = 83/373 (22%)
Query: 89 HFKRYVALKVMYFGQRFYGF---ASDGNMEPTVESEIFKALEKTRLLVADKKESH----- 140
+ R +ALK Y G + GF A++ PT+E E+++A+ K +L+ ++K
Sbjct: 56 YHTRLIALKFAYLGANYNGFEHHANNTTPLPTIEEELWRAMRKVKLIFPEQKPGQSEEDV 115
Query: 141 ------YSRCGRTDKGVSSVGQVIAIYLRS-NIKECN---TNNASMGETVQE-------- 182
YS+CGRTD+GVS+ GQVI + +RS IKE N S G Q
Sbjct: 116 CWDGIEYSKCGRTDRGVSAFGQVIGVRVRSARIKEKKQVLPNEVSAGAESQGADTIMPDV 175
Query: 183 ----------------EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD-FSARFSCISRE 225
+ I DE+ Y++++NRVLP DIR++ W P P D FSARF+C R
Sbjct: 176 SQDANAAAAPPAEKEFDPIRDELPYIQLINRVLPPDIRILAWCPEPGDGFSARFNCKERR 235
Query: 226 YKYFF-------------WREN------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVH 265
Y+YFF W L++ AM A KK+ G HDFRN CK+D + +
Sbjct: 236 YRYFFTNPAYAPLPGGKPWENGKPGEGFLDIEAMNVAAKKYEGLHDFRNLCKVDPSKQIT 295
Query: 266 NYKR---HVTSFEISPCYISFEGN----QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
N++R H E+ P + N +L ++RGSAFLWHQVR +VA+LF++GQG E
Sbjct: 296 NWERRIFHAGIHEVGPHSSAAVSNGDTPKLYYFEVRGSAFLWHQVRHLVAILFLVGQGHE 355
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL-KFTCSLDAGHDLRLHLRNECQ 377
V++ LL+ P KP Y MA ++PLVL C F + + + S AG+D
Sbjct: 356 QPSVVDDLLNVQKTPGKPHYEMASDVPLVLWDCIFPSVEELSTSDHAGND---------- 405
Query: 378 VYQLQAAIFHEAL 390
Q A +H+A+
Sbjct: 406 --QSMAGGYHDAM 416
>gi|254583638|ref|XP_002497387.1| ZYRO0F04334p [Zygosaccharomyces rouxii]
gi|238940280|emb|CAR28454.1| ZYRO0F04334p [Zygosaccharomyces rouxii]
Length = 431
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 171/295 (57%), Gaps = 18/295 (6%)
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA 134
K K + + + R++ALK Y G + G A D PTVE I AL K RL+ +
Sbjct: 65 KTKRRREFDFSKYNTRFIALKFSYLGWNYNGLAVQKDVTPLPTVEGVIIDALMKCRLVAS 124
Query: 135 DK-KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR 193
++ +SRCGRTDKGVS++ QVI++ +RSN+ + + S E+ Y +
Sbjct: 125 SNVQDFRFSRCGRTDKGVSAMNQVISLEVRSNLSDEEQKDPSNDTR--------ELQYAQ 176
Query: 194 VLNRVLPKDIRVIGWSPAPTD-FSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
+LN +LP+DI++ P + F AR+SC R YKY F + L L M+ A + GEHD
Sbjct: 177 ILNHLLPEDIKISAMCLRPPEGFDARYSCEYRHYKYLFSGKGLMLDRMQKAAALYHGEHD 236
Query: 253 FRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
FRNFCK+D + + NY R++ EI +IS N C + GSAFLWHQVRCM+A+LF
Sbjct: 237 FRNFCKLDGSKQITNYTRNILGSEIQ--HIS--DNMYC-FDLVGSAFLWHQVRCMMAILF 291
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGH 366
++GQGLE VI +LLD + P+KP Y MA ++PL+L C F +++ A +
Sbjct: 292 LVGQGLEEPSVITNLLDVDKTPQKPIYEMASDLPLILYDCKFPEMEWIQPTSADY 346
>gi|440298431|gb|ELP91067.1| tRNA pseudouridine synthase, putative [Entamoeba invadens IP1]
Length = 364
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 123/313 (39%), Positives = 177/313 (56%), Gaps = 37/313 (11%)
Query: 61 EENRKTESGGCKTGKKKVKEKMSGTLNHHFK-RYVALKVMYFGQRFYGFAS----DGNM- 114
E N+ TE KT K++V + + FK R++A+ + Y G + GFAS + N+
Sbjct: 10 EINQTTEKRETKTKKERVFDFSA------FKTRHIAVHLSYVGIGYCGFASSTLNEANLT 63
Query: 115 -------EPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIK 167
+ T+E +F++L KT+L + K++ YSRCGRTDK VS GQVI +++RS++K
Sbjct: 64 NYQKLQNDNTIEYYLFQSLFKTKL-INSKEDCKYSRCGRTDKDVSGFGQVIDLWVRSSLK 122
Query: 168 ECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYK 227
+ + Q + + DY R++N LP DIR +GW P DF++RFSC+SR Y
Sbjct: 123 T---------DIIDYTQHDGDYDYCRMINSTLPVDIRCLGWCGVPDDFNSRFSCLSRTYH 173
Query: 228 YFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQ 287
Y+F ++ AM+ A + FVGEHDF NFCK D A V + R V SFEI P
Sbjct: 174 YYFDPSGYDVEAMKQAAQYFVGEHDFTNFCKKDPA-VDHCNRKVLSFEIEPV------TH 226
Query: 288 LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLV 347
L ++G+AFLWHQVR MV LF++G G + I+ LLD N + + AP PLV
Sbjct: 227 LSRFVVKGTAFLWHQVRYMVGALFLVGSGTDP-KTIKDLLDVNNFTKPDFFKYAPAYPLV 285
Query: 348 LQSCDFDGLKFTC 360
L C++ + F C
Sbjct: 286 LFKCEYKEVDFVC 298
>gi|260781560|ref|XP_002585875.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae]
gi|229270936|gb|EEN41886.1| hypothetical protein BRAFLDRAFT_110975 [Branchiostoma floridae]
Length = 312
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 115/261 (44%), Positives = 158/261 (60%), Gaps = 18/261 (6%)
Query: 53 VEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLN--HHFKRYVALKVMYFGQRFYGFAS 110
+ED T +EE+ K + T KK+ ++K + + R+VALKV Y G + GF S
Sbjct: 27 LEDAVTKLEESTKNTTEQLTTQKKQRRQKPQRNFDFTKYNTRHVALKVAYLGWSYDGFQS 86
Query: 111 DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC- 169
+ T+E+ +F+AL KTRL + ++ S+Y RCGRTDKGVS+ GQVI++ LR+N+ +
Sbjct: 87 QETTDNTIEARLFEALTKTRL-IEKRQSSNYHRCGRTDKGVSAFGQVISLDLRTNLTDGA 145
Query: 170 -------NTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCI 222
T N G+ E I YV +LN+VLP DIRV+ W+P DFSARFSC
Sbjct: 146 GVIPRPEGTANHREGDKTTE------IKYVYILNKVLPPDIRVLAWAPVDPDFSARFSCQ 199
Query: 223 SREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYI 281
R YKYFF + NL++ +M AG+K VGEHDFRNFCKMD AN V + R + S +
Sbjct: 200 QRTYKYFFPKGNLDIQSMHLAGQKLVGEHDFRNFCKMDVANRVVTFIRRIISTHVCVTGE 259
Query: 282 SFEGNQLCAIKIRGSAFLWHQ 302
G Q+C ++ G+AFLWHQ
Sbjct: 260 ETGGYQMCEFQVVGNAFLWHQ 280
>gi|121706104|ref|XP_001271315.1| pseudouridylate synthase 3 [Aspergillus clavatus NRRL 1]
gi|119399461|gb|EAW09889.1| pseudouridylate synthase 3 [Aspergillus clavatus NRRL 1]
Length = 604
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 176/352 (50%), Gaps = 90/352 (25%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G ++GN+ P T+E EI+KA+ +TRL+ E
Sbjct: 110 RFIALKFAYLGQRYNGLEHANGNVTPLPTIEEEIWKAMRRTRLIFPTDAEPFDDSRGPRA 169
Query: 140 -----------HYSRCGRTDKGVSSVGQVIAIYLRS-----NIKECNTNNASMGETVQEE 183
YS+ GRTD+GVS+ GQVI I +RS E ++ G E
Sbjct: 170 LKPYSLSWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPATEVTSDVDMTGLDAPAE 229
Query: 184 Q----IEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF-------- 230
I DEI Y+ +LNRVLP+DIR++ W P P F ARFSC R+YKYFF
Sbjct: 230 DTWDDIADEIPYISMLNRVLPEDIRILAWCPQPPPGFDARFSCRERQYKYFFTQPAFSPT 289
Query: 231 --------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYK 268
+RE L++ AM A K F G HDFRNFCK+D + + N++
Sbjct: 290 PGPLGLALQAVDSANKIPAKYREGWLDIDAMREAAKHFEGVHDFRNFCKLDTSKQIENFE 349
Query: 269 R--------------HVTSFEISPCYISFEGN-------------QLCAIKIRGSAFLWH 301
R H + P + + E + Q+ + GSAFLWH
Sbjct: 350 RIIYHADIELVDPKHHPLGYVNQPGFQASENSVVGADTVAQATAAQVYVFNLHGSAFLWH 409
Query: 302 QVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
QVR MV++LF++GQGLES ++ LLD + PRKP Y MA + PLVL +C F
Sbjct: 410 QVRHMVSILFLVGQGLESPSIVAELLDVSKNPRKPTYEMASDAPLVLWNCIF 461
>gi|115391499|ref|XP_001213254.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624]
gi|114194178|gb|EAU35878.1| hypothetical protein ATEG_04076 [Aspergillus terreus NIH2624]
Length = 613
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 189/381 (49%), Gaps = 106/381 (27%)
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLV 133
K +M + H R++ALK Y GQR+ G ++GN+ P T+E E++KAL KTRL+
Sbjct: 95 KAPREMDPSKYH--TRFIALKFAYLGQRYNGLEHANGNVTPLPTIEEELWKALRKTRLIF 152
Query: 134 A------DKKESH----------------YSRCGRTDKGVSSVGQVIAIYLRS------- 164
D +E YS+ GRTD+GVS+ GQV+ I +RS
Sbjct: 153 PTGATADDMREFQEPRALKPYALNWEGCEYSKAGRTDRGVSAFGQVVGIRVRSARPKKKA 212
Query: 165 ---------NIKECNTNNASMGETVQE--EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+++ N + +V + + I DE+ Y+ +LNRVLP+DIRV+ W P P
Sbjct: 213 AVADPGADTPMQDGGEGNVTADRSVDDNWDDIADELPYINLLNRVLPEDIRVLAWCPHPP 272
Query: 214 D-FSARFSCISREYKYFF---------------------------WREN-LNLSAMESAG 244
+ F ARFSC R+YKYFF +RE L++ AM A
Sbjct: 273 EGFDARFSCRERQYKYFFTQPAFSPTPGPGGFAPRANDKAGSVPKYREGWLDIEAMREAA 332
Query: 245 KKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI--------------SPCYISFE----- 284
+ FVG HDFRNFCK+D + + N++R + +I P + + E
Sbjct: 333 RMFVGRHDFRNFCKLDTSKQIENFERIIYHSDIELVDPRSTPLGYVAQPGFTALESPSAE 392
Query: 285 ------------GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI 332
+Q+ ++GSAFLWHQVR MV+VLF++GQGLE ++ LLD +
Sbjct: 393 QGSGSLETPVPTASQVYVFSLQGSAFLWHQVRHMVSVLFLVGQGLEKPSIVSELLDVSKN 452
Query: 333 PRKPQYNMAPEIPLVLQSCDF 353
PRKP Y MA + PLVL C F
Sbjct: 453 PRKPSYEMASDAPLVLWDCIF 473
>gi|358396017|gb|EHK45404.1| hypothetical protein TRIATDRAFT_284330 [Trichoderma atroviride IMI
206040]
Length = 655
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 179/349 (51%), Gaps = 88/349 (25%)
Query: 92 RYVALKVMYFGQRFYGF--ASDGNMEPTVESEIFKALEKTRLLVADKKE------SHYSR 143
R++ALK+ Y G+ F GF + GN +P +E E++ AL K L+ + + YS+
Sbjct: 156 RFIALKLAYLGKNFGGFEFQAQGN-QPAIEEELWNALTKACLIFPEDENVVNFDCCEYSK 214
Query: 144 CGRTDKGVSSVGQVIAIYLRSN-----------------IKECNTNNASMGETVQE---- 182
CGRTD+GVS+ GQVI + +RSN +E A G+T ++
Sbjct: 215 CGRTDRGVSAFGQVIGLRVRSNRPLPKKQPEMDEEADLAKEEEGHEAAGDGQTKKQSKPK 274
Query: 183 ------EQIEDEIDYVRVLNRVLPKDIRVIGWSPA-PTDFSARFSCISREYKYFFWREN- 234
+ I DEI Y VLNR+LPK+IR++ W PA P DFSARFSC R+Y+YFF +
Sbjct: 275 APPKPFDDIRDEIPYPHVLNRLLPKEIRILAWCPAPPPDFSARFSCRERQYRYFFTQPAF 334
Query: 235 ---------------------------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHN 266
L++ AM A K++ GEHDFRN CK+D A + N
Sbjct: 335 APMPSLIEDSAAAKKGDQDEKLMKPGWLDIEAMRDAAKRYEGEHDFRNLCKVDPAKQITN 394
Query: 267 YKRHVTSFEI--------SPCYISFEG--------------NQLCAIKIRGSAFLWHQVR 304
+KR + +I + Y+ G ++ +RGSAFLWHQ+R
Sbjct: 395 FKRRMFESDIVEVKDAASALPYLKAAGFAPENLDLSSGEAFPKVYYFHVRGSAFLWHQIR 454
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
MVAVLF++GQGLE +I LLD PR+P Y MA E+PLVL C F
Sbjct: 455 HMVAVLFLVGQGLEKPSLISELLDIEKNPRRPNYVMADEVPLVLWDCIF 503
>gi|403215491|emb|CCK69990.1| hypothetical protein KNAG_0D02400 [Kazachstania naganishii CBS
8797]
Length = 418
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/291 (39%), Positives = 173/291 (59%), Gaps = 24/291 (8%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA-DKKESHYS 142
+ H R++AL+ Y G ++ G A + PTVE I + + K +L+ + + + ++S
Sbjct: 90 FSRHHTRFIALRFAYLGWKYNGLALQKEPTALPTVEETILEVMNKCKLVPSMEPLDYNFS 149
Query: 143 RCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
RCGRTDKGVS++ QVI++ +RSN+ S E E+ YV ++N +LP D
Sbjct: 150 RCGRTDKGVSAMNQVISLTVRSNL--------SPEEQRDPANDHQELQYVHMINHLLPDD 201
Query: 203 IRV--IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMD 260
IRV + P P DF AR SC R Y+Y F E L+L M A K + GEHDFRNFCK+D
Sbjct: 202 IRVSAVCLRP-PADFDARHSCKHRHYRYLFKAEQLDLEKMREAAKLYEGEHDFRNFCKID 260
Query: 261 AA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + NY+R + S +I I + C + G+AFLWHQVRCM+A LF++GQGLE
Sbjct: 261 GSKQITNYRRRIISGDI----IRVNEDFYC-FDLVGTAFLWHQVRCMMACLFLVGQGLEK 315
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT-CSLDAGHDLR 369
++ L++ + +P+KP Y+MA ++PL+L C F +++ C+L HD +
Sbjct: 316 PSIVTDLMNIDLMPQKPLYDMASDVPLLLYDCKFPDMEWIKCNL---HDYK 363
>gi|18376136|emb|CAD21201.1| related to pseudouridine synthase 3 [Neurospora crassa]
Length = 669
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 174/346 (50%), Gaps = 81/346 (23%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKES------HYSRC 144
R +ALK Y G+ + GF + + P++E E++KAL K+ L+ ++ + YS+C
Sbjct: 140 RLIALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLIFPERPDEVDFGPWEYSKC 199
Query: 145 GRTDKGVSSVGQVIAIYLRSN---IKE------CNTNNASMGETVQEE------------ 183
GRTD+GVS+ GQVI I +RSN KE ++ M E Q++
Sbjct: 200 GRTDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGNEEDDVVMVEAAQQQAKDSEKAAAEVD 259
Query: 184 -------QIEDEIDYVRVLNRVLPKDIRVIGWSPA-PTDFSARFSCISREYKYFFWREN- 234
I DEI Y RVLNR+LP DIR++ W+P P +FSARFSC R+Y+YFF +
Sbjct: 260 HQKPEWDPIADEIPYCRVLNRLLPPDIRIMAWAPDLPPNFSARFSCRERQYRYFFTQPAF 319
Query: 235 ------------------------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKR 269
L++ M A K F G HDFRNFCK+D + N+ R
Sbjct: 320 APMPSTLEPPLASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQITNFSR 379
Query: 270 HVTSFEI-------------------SPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
V +I P ++ +RGSAFLWHQ+R MVAVL
Sbjct: 380 RVFESDIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHMVAVL 439
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL 356
F++GQGLE +++ LLD PRKP Y MA E+PLVL C F L
Sbjct: 440 FLVGQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIFPKL 485
>gi|296423394|ref|XP_002841239.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637475|emb|CAZ85430.1| unnamed protein product [Tuber melanosporum]
Length = 483
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/322 (38%), Positives = 181/322 (56%), Gaps = 43/322 (13%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGF---ASDGNMEPTVESEIFKALEKTRLL 132
KK K K +L + R++AL++ Y G + GF A+ N T+E IFKAL K RL+
Sbjct: 10 KKPKRKFDPSL--YSTRHIALRIAYLGGNYTGFEYHANSPNTTNTIEEHIFKALLKARLV 67
Query: 133 VADKKE--------------SHYSRCGRTDKGVSSVGQVIAIYLRSN--IKECNTNNASM 176
+ E + YS+CGRTD GVS+ GQVI + +RSN + + T++ +
Sbjct: 68 PCNGIEGEEETVLGWPGDEVAEYSKCGRTDTGVSAFGQVIGVRVRSNRPLPKKPTDDVAE 127
Query: 177 GETVQE------EQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYF 229
+ + +DE+ Y ++LNR+LPKDIRV+ W P P FSARF+C R Y+YF
Sbjct: 128 EGGEEGKEKTEFDDEKDELPYPQILNRLLPKDIRVLAWCPHPPPTFSARFNCQQRHYRYF 187
Query: 230 FWRE-----------NLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEIS 277
F NL++ M A K +VG+HDFRNFCK+DA+ + + R + +I
Sbjct: 188 FTNPAIVPSPNSTVGNLDIDKMREAAKLYVGDHDFRNFCKLDASKQITRFDRVIHHADIV 247
Query: 278 PCYISFEGN--QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRK 335
S N ++ ++ GSAFLWHQVR M+A+LF+I QGLE ++ +LD + PRK
Sbjct: 248 ELPQSSPNNNPKVYYFELHGSAFLWHQVRHMIAILFLIAQGLEQPSLVTEMLDISKNPRK 307
Query: 336 PQYNMAPEIPLVLQSCDF-DGL 356
P Y++A + LVL C F DG+
Sbjct: 308 PMYDIANDRALVLWDCIFPDGM 329
>gi|85083865|ref|XP_957207.1| hypothetical protein NCU01784 [Neurospora crassa OR74A]
gi|28918294|gb|EAA27971.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 608
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 174/346 (50%), Gaps = 81/346 (23%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKES------HYSRC 144
R +ALK Y G+ + GF + + P++E E++KAL K+ L+ ++ + YS+C
Sbjct: 79 RLIALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLIFPERPDEVDFGPWEYSKC 138
Query: 145 GRTDKGVSSVGQVIAIYLRSN---IKE------CNTNNASMGETVQEE------------ 183
GRTD+GVS+ GQVI I +RSN KE ++ M E Q++
Sbjct: 139 GRTDRGVSAFGQVIGIRVRSNKPLPKEEPEQTGNEEDDVVMVEAAQQQAKDSEKAAAEVD 198
Query: 184 -------QIEDEIDYVRVLNRVLPKDIRVIGWSPA-PTDFSARFSCISREYKYFFWREN- 234
I DEI Y RVLNR+LP DIR++ W+P P +FSARFSC R+Y+YFF +
Sbjct: 199 HQKPEWDPIADEIPYCRVLNRLLPPDIRIMAWAPDLPPNFSARFSCRERQYRYFFTQPAF 258
Query: 235 ------------------------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKR 269
L++ M A K F G HDFRNFCK+D + N+ R
Sbjct: 259 APMPSTLEPPLASSGHKSGGKQGWLDIDMMRKAAKMFEGVHDFRNFCKIDPGKQITNFSR 318
Query: 270 HVTSFEI-------------------SPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
V +I P ++ +RGSAFLWHQ+R MVAVL
Sbjct: 319 RVFESDIVEVKDLESDLPYLGLPEFQPPAGSDGPHPKVYYFHVRGSAFLWHQIRHMVAVL 378
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL 356
F++GQGLE +++ LLD PRKP Y MA E+PLVL C F L
Sbjct: 379 FLVGQGLEPPSIVQQLLDVEKNPRKPNYVMADEVPLVLWDCIFPKL 424
>gi|392870780|gb|EAS32613.2| tRNA pseudouridine(38-40) synthase [Coccidioides immitis RS]
Length = 614
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 185/374 (49%), Gaps = 108/374 (28%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G+ ++GN+ P T+E E+FKAL K+RL+ E+
Sbjct: 98 RFIALKFAYLGQRYNGYEHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGN 157
Query: 140 -------------HYSRCGRTDKGVSSVGQVIAIYLRS-------NIKECNTNNASMGET 179
YS+CGRTD+GVS+ GQV+ + +RS +++ T + T
Sbjct: 158 RLLRPYSIDWEGCDYSKCGRTDRGVSAFGQVVGVRVRSAKPKKKKDVEPVKTPDTPSSVT 217
Query: 180 VQE-------------------EQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARF 219
E + I DE+ Y+++LN VLP+DIR++ W P P F ARF
Sbjct: 218 PVESPLGGLDIDVSDLEAEEAWDDIADELPYIQMLNGVLPEDIRILAWCPHPPPGFDARF 277
Query: 220 SCISREYKYFF-------------------------WREN-LNLSAMESAGKKFVGEHDF 253
SC R Y+YFF RE L++ AM K+F+G HDF
Sbjct: 278 SCRERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGWLDIDAMREGAKRFIGSHDF 337
Query: 254 RNFCKMDAA-NVHNYKRHVTSFEI--------SPCYISFEGNQL---------------- 288
RNFCK+DA+ + N+ R ++ +I P +++ +G Q
Sbjct: 338 RNFCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHPGQQERAASGSHN 397
Query: 289 CAIKI-----RGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPE 343
A+K+ GSAFLWHQVR MV +LF+IGQGLE ++ LLD + PR+P Y +A +
Sbjct: 398 AALKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTYEIASD 457
Query: 344 IPLVLQSCDFDGLK 357
PLVL C F G K
Sbjct: 458 APLVLWDCVFPGPK 471
>gi|451993927|gb|EMD86399.1| hypothetical protein COCHEDRAFT_1115979 [Cochliobolus
heterostrophus C5]
Length = 605
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 142/384 (36%), Positives = 188/384 (48%), Gaps = 105/384 (27%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRLLVA-------------D 135
R +ALK Y GQ++ GF N PT+E E++KAL KTRL+ D
Sbjct: 78 RLIALKFAYLGQKYNGFEHHKNNSTPLPTIEEELWKALVKTRLITPATTAEGEKAYERID 137
Query: 136 KKE---------------SHYSRCGRTDKGVSSVGQVIAIYLRSN-------------IK 167
KK YS+CGRTD+GVS+ GQVI + +RSN K
Sbjct: 138 KKTFASWDREGVDVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNKPLPKKPQPSEDTPK 197
Query: 168 ECNTNNASMGETVQEEQ--------IEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSAR 218
+ SM + QE + + DE+ Y+++LNRVLP DIRV W P P DFSAR
Sbjct: 198 AGQEDEDSMLSSKQEPESPPKPFNDLTDELPYIQLLNRVLPPDIRVYAWCPNPPPDFSAR 257
Query: 219 FSCISREYKYFF----------------------------WREN-LNLSAMESAGKKFVG 249
FSC R YKYFF RE L++ AM+ + +G
Sbjct: 258 FSCKERRYKYFFTNPCFAPVPGSSGLYNPNTPISSENKPKMREGWLDIDAMKQGCQHLIG 317
Query: 250 EHDFRNFCKMDAA----NVHNYKRHVTSFEISPCYI-----------SFEGN-----QLC 289
HDFRNFCK+DA+ N H H E+SP I S + N +L
Sbjct: 318 LHDFRNFCKIDASKQITNFHRRIFHADIEEVSPLSIPAFLSHPALQASNDTNTETQPKLY 377
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
+ + GSAFLWHQVR +VA+LF+IGQGLES +I LLD + P +P+Y MA + PLVL
Sbjct: 378 SFTLHGSAFLWHQVRSLVAILFLIGQGLESPSLIPVLLDISANPTRPKYEMASDAPLVLW 437
Query: 350 SCDF---DGLKFTCSLDAGHDLRL 370
C F D ++ + + G++ RL
Sbjct: 438 DCIFPHPDEVQSSDEREHGYEDRL 461
>gi|119186911|ref|XP_001244062.1| hypothetical protein CIMG_03503 [Coccidioides immitis RS]
Length = 537
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 185/374 (49%), Gaps = 108/374 (28%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G+ ++GN+ P T+E E+FKAL K+RL+ E+
Sbjct: 98 RFIALKFAYLGQRYNGYEHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGN 157
Query: 140 -------------HYSRCGRTDKGVSSVGQVIAIYLRS-------NIKECNTNNASMGET 179
YS+CGRTD+GVS+ GQV+ + +RS +++ T + T
Sbjct: 158 RLLRPYSIDWEGCDYSKCGRTDRGVSAFGQVVGVRVRSAKPKKKKDVEPVKTPDTPSSVT 217
Query: 180 VQE-------------------EQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARF 219
E + I DE+ Y+++LN VLP+DIR++ W P P F ARF
Sbjct: 218 PVESPLGGLDIDVSDLEAEEAWDDIADELPYIQMLNGVLPEDIRILAWCPHPPPGFDARF 277
Query: 220 SCISREYKYFF-------------------------WREN-LNLSAMESAGKKFVGEHDF 253
SC R Y+YFF RE L++ AM K+F+G HDF
Sbjct: 278 SCRERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGWLDIDAMREGAKRFIGSHDF 337
Query: 254 RNFCKMDAA-NVHNYKRHVTSFEI--------SPCYISFEGNQL---------------- 288
RNFCK+DA+ + N+ R ++ +I P +++ +G Q
Sbjct: 338 RNFCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHPGQQERAASGSHN 397
Query: 289 CAIKI-----RGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPE 343
A+K+ GSAFLWHQVR MV +LF+IGQGLE ++ LLD + PR+P Y +A +
Sbjct: 398 AALKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTYEIASD 457
Query: 344 IPLVLQSCDFDGLK 357
PLVL C F G K
Sbjct: 458 APLVLWDCVFPGPK 471
>gi|195026984|ref|XP_001986382.1| GH21331 [Drosophila grimshawi]
gi|193902382|gb|EDW01249.1| GH21331 [Drosophila grimshawi]
Length = 503
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 195/347 (56%), Gaps = 26/347 (7%)
Query: 19 LQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRK--TESGGCKTGKK 76
L +++++LEA N +L + L +K+ + + E T L + K T T KK
Sbjct: 27 LIDKIEQLEAYNFQLKNILQ----KKLTENDRNNAEYTTLLRGDTEKPVTLPTEENTSKK 82
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK 136
+ K++ + +R+V LKVMYFG + GFA + T+E+ +F+AL +T L+ +
Sbjct: 83 EGKQR-KFNWDSANRRHVLLKVMYFGWDYQGFACQEDSNETIEAFLFRALIRT-CLIESR 140
Query: 137 KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLN 196
S+Y RCGRTDK VS+ QVI+I LRS + ++ + + EIDY +LN
Sbjct: 141 ATSNYHRCGRTDKEVSAFCQVISIDLRSK--------HAPDVQLESDSLATEIDYCSLLN 192
Query: 197 RVLPKDIRVIGWSPAPTD-FSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRN 255
RVLPK+I+ + W P +SARF CISR Y+Y+F + +L++ AM A V DFRN
Sbjct: 193 RVLPKNIQCVSWMPLRNHVYSARFDCISRTYRYYFPKGDLDIEAMRMACDLIVCHGDFRN 252
Query: 256 FCKMDAAN-VHNYKRHVTSFEISPC---YISFE-----GNQLCAIKIRGSAFLWHQVRCM 306
FCKMD N V NY R++ + I C + E G + ++I+ +AFLWHQ+RC+
Sbjct: 253 FCKMDVHNGVTNYMRNLQAARIQACEGTAVEVENDLNSGYTMYYLEIQANAFLWHQIRCI 312
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+AVL ++GQ E +I LLD P KPQY A +PL L CDF
Sbjct: 313 MAVLLLVGQKHEEPVIISKLLDVVSNPCKPQYTPAIGLPLNLFRCDF 359
>gi|341038783|gb|EGS23775.1| pseudouridylate synthase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 590
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/349 (37%), Positives = 178/349 (51%), Gaps = 84/349 (24%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKES------HYSRC 144
R +ALK+ Y G+ + GF G+ PT+E E++KAL + L+ + + YS+C
Sbjct: 78 RVIALKLAYLGKNYGGFEYQGSANVPTIEEELWKALCRACLIWPENPDKVDFTPWEYSKC 137
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECN-----------TNNASMGETV------------- 180
GRTDKGVS+ GQVI I +RSN T+ + GE
Sbjct: 138 GRTDKGVSAFGQVITIKVRSNRPVSKKEEEVKEDVEMTDVPAEGEQTKGKKKGDDKKQKV 197
Query: 181 ---QEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA-PTDFSARFSCISREYKYFFW----- 231
+ + I DEI+Y RVLNR+LP DIR++ W+P P +FSAR+SC R+Y+YFF
Sbjct: 198 IKSEWDPIADEINYPRVLNRLLPPDIRILAWAPTLPPNFSARYSCYERQYRYFFTNPAFS 257
Query: 232 ---------------------REN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYK 268
RE L++ AM A K F G HDFRNFCK+D A + N+
Sbjct: 258 PLPPSLDPGLASSDGNDPNKPREGWLDIDAMRMAAKLFEGVHDFRNFCKVDGAKQISNFT 317
Query: 269 RHVTSFEI--------SPCYISFEGNQLCA-------------IKIRGSAFLWHQVRCMV 307
R V +I S +++ + L + +RGSAFLWHQ+R MV
Sbjct: 318 RRVFEADIVEVDDATSSLPFLTQRPDLLPSGFDRSDRYPKVYYFHVRGSAFLWHQIRHMV 377
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL 356
+VLF IGQGLE ++ LLD + PR+P Y MA E+PLVL C F L
Sbjct: 378 SVLFAIGQGLEKPSLVTELLDADSHPRRPNYAMADEVPLVLWDCIFPKL 426
>gi|303317424|ref|XP_003068714.1| pseudouridylate synthase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240108395|gb|EER26569.1| pseudouridylate synthase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 610
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 185/374 (49%), Gaps = 108/374 (28%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G+ ++GN+ P T+E E+FKAL K+RL+ E+
Sbjct: 94 RFIALKFAYLGQRYNGYEHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGN 153
Query: 140 -------------HYSRCGRTDKGVSSVGQVIAIYLRS-------NIKECNTNNASMGET 179
YS+CGRTD+GVS+ GQV+ + +RS +++ T + T
Sbjct: 154 RLLRPYSIDWEGCDYSKCGRTDRGVSAFGQVVGVRVRSAKPKKKKDVEPVKTPDIPSSVT 213
Query: 180 VQE-------------------EQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARF 219
E + I DE+ Y+++LN VLP+DIR++ W P P F ARF
Sbjct: 214 PVESPLGGLDIDVCDLEAEEAWDDIADELPYIQMLNGVLPEDIRILAWCPHPPPGFDARF 273
Query: 220 SCISREYKYFF-------------------------WREN-LNLSAMESAGKKFVGEHDF 253
SC R Y+YFF RE L++ AM K+F+G HDF
Sbjct: 274 SCRERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGWLDIDAMREGAKRFIGSHDF 333
Query: 254 RNFCKMDAA-NVHNYKRHVTSFEI--------SPCYISFEGNQL---------------- 288
RNFCK+DA+ + N+ R ++ +I P +++ +G Q
Sbjct: 334 RNFCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHLGQQERAASGGHN 393
Query: 289 CAIKI-----RGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPE 343
A+K+ GSAFLWHQVR MV +LF+IGQGLE ++ LLD + PR+P Y +A +
Sbjct: 394 AALKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTYEIASD 453
Query: 344 IPLVLQSCDFDGLK 357
PLVL C F G K
Sbjct: 454 APLVLWDCVFPGPK 467
>gi|67525425|ref|XP_660774.1| hypothetical protein AN3170.2 [Aspergillus nidulans FGSC A4]
gi|40744565|gb|EAA63741.1| hypothetical protein AN3170.2 [Aspergillus nidulans FGSC A4]
Length = 625
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 175/358 (48%), Gaps = 96/358 (26%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRLL---------VADKKES 139
R++ALK Y GQR+ G N PT+E E++KAL +TRL+ V D+K
Sbjct: 126 RFIALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMRTRLIFPTDMGDEDVPDRKAK 185
Query: 140 H--------------YSRCGRTDKGVSSVGQVIAIYLRS---------NIKECNTNNASM 176
YS+ GRTD+GVS+ GQVI + +RS + N +
Sbjct: 186 RKEIEPFNISWEGCEYSKAGRTDRGVSAFGQVIGLKVRSARPKRKEPKPAQVSNDTAETT 245
Query: 177 GETVQEEQ---IEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF-- 230
ETV +E I DE+ Y+ +LN+ LP+DIRV+ W P P DF AR+SC R YKYFF
Sbjct: 246 RETVADEDWDDIADELPYISLLNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKYFFTQ 305
Query: 231 ----------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHN 266
+RE L++ AM A K F G HDFRNFCK+D + + N
Sbjct: 306 PAFSPTPGPLGLLPRKGDAPPKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIEN 365
Query: 267 YKR------------------HVTSFEIS-------------PCYISFEGNQLCAIKIRG 295
++R +V E S P G Q+ ++G
Sbjct: 366 FERIIYRADIELLDPRNSPLGYVNRPEFSALNYPDTDSLTQKPAGSVPPGCQVYVFNLQG 425
Query: 296 SAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
SAFLWHQVR MV +LF++GQGLES V+ LLD PRKP Y MA + PLVL +C F
Sbjct: 426 SAFLWHQVRHMVGILFLVGQGLESPSVVRELLDVTKNPRKPMYEMASDAPLVLWNCVF 483
>gi|294656526|ref|XP_458796.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
gi|199431537|emb|CAG86940.2| DEHA2D07722p [Debaryomyces hansenii CBS767]
Length = 444
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 182/330 (55%), Gaps = 42/330 (12%)
Query: 54 EDGTTLVEEN------RKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYG 107
E+ T + +N + E + K K KE + + KR++AL+ Y G + G
Sbjct: 43 ENETAMTNDNSENNDIKPDEKNNKRLSKNKPKE---FDFSKYNKRFIALRFAYVGWDYNG 99
Query: 108 --FASDGNMEPTVESEIFKALEKTRLLV-ADKKESHYSRCGRTDKGVSSVGQVIAIYLRS 164
F + PTVE EI KAL K++L+ D ++SRCGRTDKGVS++ QVI++ +RS
Sbjct: 100 LNFQYEPTPLPTVEEEILKALAKSKLITQVDPACCNFSRCGRTDKGVSAMNQVISLDVRS 159
Query: 165 NIKECNTNNASMGETVQEEQI-----EDEIDYVRVLNRVLPKDIRVIG--WSPAPTDFSA 217
N+ + E+Q+ + E+ Y+ +LN +LP DIR+ P P F A
Sbjct: 160 NL-------------IPEDQLSSSNDDKELPYLAILNSLLPTDIRITAVCLRPPPK-FDA 205
Query: 218 RFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI 276
RFSC R Y+Y F + +L+L M+ K++ G DFRNFCK+D + + NYKR V S I
Sbjct: 206 RFSCSYRHYRYIFRKYDLDLDLMQEGAKRYEGVRDFRNFCKIDGSKQITNYKREVLSANI 265
Query: 277 SPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKP 336
F ++GSAFLWHQVRCM+AVLF +GQ LE+ +I+ L+D P KP
Sbjct: 266 IHLRDDF-----YIFDLKGSAFLWHQVRCMMAVLFAVGQKLEAPSIIDDLVDVEKFPGKP 320
Query: 337 QYNMAPEIPLVLQSCDFDGLKFTCSLDAGH 366
+ MA ++PLVL C F +++ LD H
Sbjct: 321 SFEMANDVPLVLYDCVFPEMEW---LDIQH 347
>gi|393227193|gb|EJD34883.1| pseudouridine synthase, partial [Auricularia delicata TFB-10046
SS5]
Length = 411
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 111/290 (38%), Positives = 164/290 (56%), Gaps = 34/290 (11%)
Query: 90 FKRYVALKVMYFGQRFYGFASDGNME--PTVESEIFKALEKTRLLVADKKES--HYSRCG 145
++R +ALK Y G + G AS G PTVE+ + +AL K RL+ + + + RCG
Sbjct: 47 YRRKIALKFCYDGWEYNGLASQGEPTALPTVEAVLQEALYKKRLIDPNAGPAGCDWDRCG 106
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTDKGVS+ QV+++++R+ KE YV +LNRVLP +R+
Sbjct: 107 RTDKGVSAASQVVSLWIRTAKKE--------------------FPYVSMLNRVLPPSLRI 146
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NV 264
+ W+P FSARF+C R YKYFF + ++L+ M + +GEHDFRN CK+DAA +
Sbjct: 147 LAWAPVADTFSARFNCRYRHYKYFFSPDGIDLARMRAGAALLLGEHDFRNLCKLDAAKQI 206
Query: 265 HNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIE 324
N++R + +IS + G L + G+AFLWHQVR ++AVLFM+G G E ++++
Sbjct: 207 SNFRRRIDRADISE--VEGTGGALYVFDLIGTAFLWHQVRHIMAVLFMVGSGAEPVELMR 264
Query: 325 SLLDTNG-------IPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
+LL+ +G + RKP+Y MA +PLVL C +D D D
Sbjct: 265 ALLNVDGADAEVETVDRKPEYQMADGLPLVLWDCAYDPADVPWVQDVDED 314
>gi|170068141|ref|XP_001868750.1| pseudouridylate synthase [Culex quinquefasciatus]
gi|167864259|gb|EDS27642.1| pseudouridylate synthase [Culex quinquefasciatus]
Length = 470
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/290 (38%), Positives = 169/290 (58%), Gaps = 21/290 (7%)
Query: 73 TGKKKVKEKMSGTLNHHF------KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKAL 126
TG K + + S F KR++ L+ Y G F G+A+ + T+E +F AL
Sbjct: 49 TGTKSDQPRSSNKNQRKFDFSKCHKRHILLRFFYLGWDFQGYATQEDSANTIEHHLFNAL 108
Query: 127 EKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE 186
+ L+ ++ S+Y RCGRTDKGVS+ QV+++ +RS + E ++
Sbjct: 109 TRV-CLIESRESSNYHRCGRTDKGVSAFHQVVSLDVRSKFPP--------ESQLAPESLQ 159
Query: 187 DEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFFWRENLNLSAMESAGK 245
+E++Y ++LNRVLP +IR + W P A ++SARF C SR Y+YFF R +L++ AM +
Sbjct: 160 NELNYCQLLNRVLPAEIRCVAWMPTANPNYSARFDCRSRTYRYFFPRGSLDVDAMRKGCE 219
Query: 246 KFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGN---QLCAIKIRGSAFLWH 301
VG HDFRN CKMD N V ++R+V + + + G+ + ++RG AFLWH
Sbjct: 220 FLVGSHDFRNLCKMDVGNGVVTFQRNV-HYAVIRDSLKDGGDSSYDMLYFELRGKAFLWH 278
Query: 302 QVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSC 351
QVRC++A+L ++GQG E VI LLD PRKPQY++A ++PL L C
Sbjct: 279 QVRCIMAILILVGQGREDPTVIRELLDVEKNPRKPQYSLANDVPLNLYEC 328
>gi|259485874|tpe|CBF83268.1| TPA: pseudouridylate synthase 3 (AFU_orthologue; AFUA_3G13350)
[Aspergillus nidulans FGSC A4]
Length = 664
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 175/358 (48%), Gaps = 96/358 (26%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRLL---------VADKKES 139
R++ALK Y GQR+ G N PT+E E++KAL +TRL+ V D+K
Sbjct: 165 RFIALKFAYLGQRYQGLEHANNNPTALPTIEEEMWKALMRTRLIFPTDMGDEDVPDRKAK 224
Query: 140 H--------------YSRCGRTDKGVSSVGQVIAIYLRS---------NIKECNTNNASM 176
YS+ GRTD+GVS+ GQVI + +RS + N +
Sbjct: 225 RKEIEPFNISWEGCEYSKAGRTDRGVSAFGQVIGLKVRSARPKRKEPKPAQVSNDTAETT 284
Query: 177 GETVQEEQ---IEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF-- 230
ETV +E I DE+ Y+ +LN+ LP+DIRV+ W P P DF AR+SC R YKYFF
Sbjct: 285 RETVADEDWDDIADELPYISLLNKALPEDIRVLAWCPNPPEDFDARYSCRERHYKYFFTQ 344
Query: 231 ----------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHN 266
+RE L++ AM A K F G HDFRNFCK+D + + N
Sbjct: 345 PAFSPTPGPLGLLPRKGDAPPKYREGWLDIDAMREAAKYFEGVHDFRNFCKVDTSKQIEN 404
Query: 267 YKR------------------HVTSFEIS-------------PCYISFEGNQLCAIKIRG 295
++R +V E S P G Q+ ++G
Sbjct: 405 FERIIYRADIELLDPRNSPLGYVNRPEFSALNYPDTDSLTQKPAGSVPPGCQVYVFNLQG 464
Query: 296 SAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
SAFLWHQVR MV +LF++GQGLES V+ LLD PRKP Y MA + PLVL +C F
Sbjct: 465 SAFLWHQVRHMVGILFLVGQGLESPSVVRELLDVTKNPRKPMYEMASDAPLVLWNCVF 522
>gi|320038677|gb|EFW20612.1| pseudouridylate synthase 3 [Coccidioides posadasii str. Silveira]
Length = 588
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 185/374 (49%), Gaps = 108/374 (28%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G+ ++GN+ P T+E E+FKAL K+RL+ E+
Sbjct: 98 RFIALKFAYLGQRYNGYEHANGNITPLPTIEEELFKALRKSRLIFPKTVENVDNVDRAGN 157
Query: 140 -------------HYSRCGRTDKGVSSVGQVIAIYLRS-------NIKECNTNNASMGET 179
YS+CGRTD+GVS+ GQV+ + +RS +++ T + T
Sbjct: 158 RLLRPYSIDWEGCDYSKCGRTDRGVSAFGQVVGVRVRSAKPKKKKDVEPVKTPDIPSSVT 217
Query: 180 VQE-------------------EQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARF 219
E + I DE+ Y+++LN VLP+DIR++ W P P F ARF
Sbjct: 218 PVESPPGGLDIDVCDLEAEEAWDDIADELPYIQMLNGVLPEDIRILAWCPHPPPGFDARF 277
Query: 220 SCISREYKYFF-------------------------WREN-LNLSAMESAGKKFVGEHDF 253
SC R Y+YFF RE L++ AM K+F+G HDF
Sbjct: 278 SCRERRYRYFFTQPAFCPTPGPFGFLKRPGDTSGAKMREGWLDIDAMREGAKRFIGSHDF 337
Query: 254 RNFCKMDAA-NVHNYKRHVTSFEI--------SPCYISFEGNQL---------------- 288
RNFCK+DA+ + N+ R ++ +I P +++ +G Q
Sbjct: 338 RNFCKVDASKQITNFVRKISHADIQVLDASKLPPAFLAQQGFQQFEHPGQQERAASGGHN 397
Query: 289 CAIKI-----RGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPE 343
A+K+ GSAFLWHQVR MV +LF+IGQGLE ++ LLD + PR+P Y +A +
Sbjct: 398 AALKVYYFSVHGSAFLWHQVRHMVGILFLIGQGLEPPSIVSELLDVSKNPRRPTYEIASD 457
Query: 344 IPLVLQSCDFDGLK 357
PLVL C F G K
Sbjct: 458 APLVLWDCVFPGPK 471
>gi|452983301|gb|EME83059.1| hypothetical protein MYCFIDRAFT_136942 [Pseudocercospora fijiensis
CIRAD86]
Length = 526
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 128/334 (38%), Positives = 176/334 (52%), Gaps = 61/334 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRLLVADKK--ES------- 139
R +ALK Y G + GF N PT+E E++KAL KT+L+ + K ES
Sbjct: 60 RLIALKFAYLGGNYNGFEHHNNNTTPLPTIEEELWKALNKTKLIFPEYKVGESGGGDVSW 119
Query: 140 ---HYSRCGRTDKGVSSVGQVIAIYLRSN---------IKECNTNNASMGETVQE----- 182
YS+CGRTD+GVS+ GQVI + +RS+ + S+G +
Sbjct: 120 EGVEYSKCGRTDRGVSAFGQVIGLRVRSSRPKEKEKVEVNVVVEEEESVGSDAEVEVEEK 179
Query: 183 ----EQIEDEIDYVRVLNRVLPKDIRVIGW-SPAPTDFSARFSCISREYKYFFWR----- 232
+ I DE+ Y+++LNRVLP DIRV+ W + P DFSARF+C R Y+YFF
Sbjct: 180 EKEWDHIRDELPYIQLLNRVLPPDIRVLAWCADPPEDFSARFNCKERRYRYFFTNPAFVP 239
Query: 233 --------EN-------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKR---HVTS 273
EN L++ AM+ A KK+ G HDFRN CK+D + + ++ R H
Sbjct: 240 LPGCKHKSENERPGEGWLDIEAMDQAAKKYEGLHDFRNLCKVDPSKQIADFSRRIFHAGI 299
Query: 274 FEISP---CYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
E+ + +L ++RGSAFLWHQVR +VAVLF++GQG ES +++ LLD
Sbjct: 300 HEVQSQGGSVVDPSSPKLFYFEVRGSAFLWHQVRHLVAVLFLVGQGYESPSIVDELLDIG 359
Query: 331 GIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
P KP Y MA +IPLVL C F + DA
Sbjct: 360 KTPAKPHYEMASDIPLVLWDCIFPSAEEPSYTDA 393
>gi|224035593|gb|ACN36872.1| unknown [Zea mays]
Length = 199
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Query: 240 MESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFL 299
M+ A KF+GEHDFRNFCKMDAANV NY+RH+T F IS C ++LC++ I+GSAFL
Sbjct: 1 MQKAASKFIGEHDFRNFCKMDAANVSNYRRHITEFTISACDRRSNNDELCSMTIKGSAFL 60
Query: 300 WHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359
WHQVRCMVAVLF+IGQGLES V++SLLD RKPQY MAPE+PL+LQSC FD F
Sbjct: 61 WHQVRCMVAVLFLIGQGLESPSVVDSLLDIMKTSRKPQYKMAPELPLILQSCLFDKANFM 120
Query: 360 CSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPL 396
CS DA L HL +E + + LQA IFH A +CLP
Sbjct: 121 CSADASRSLTEHLNDEYRHHMLQAEIFHIA-SSCLPF 156
>gi|189193015|ref|XP_001932846.1| pseudouridylate synthase 3 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187978410|gb|EDU45036.1| pseudouridylate synthase 3 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 599
Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 132/359 (36%), Positives = 174/359 (48%), Gaps = 97/359 (27%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRLLV-----ADKKESH--- 140
R +ALK Y GQ++ GF N PT+E E++KAL KTRL+ + ES+
Sbjct: 78 RLIALKFAYLGQKYNGFEHHKNNTTPLPTIEEELWKALVKTRLITPIPTAGGETESYERI 137
Query: 141 ---------------------YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGET 179
YS+CGRTD+GVS+ GQVI + +RSN +
Sbjct: 138 DRKTFARWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNKPLPKAPQSPEETP 197
Query: 180 VQE--------------------EQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSAR 218
+ DE+ Y+++LNRVLP DIRV W P P DFSAR
Sbjct: 198 ETNEEESPPSSPSSDSKPPPKPFNDLTDELPYIQLLNRVLPPDIRVYAWCPNPPADFSAR 257
Query: 219 FSCISREYKYFF------------------------WREN-LNLSAMESAGKKFVGEHDF 253
FSC R YKYFF RE L+++AM+ VG HDF
Sbjct: 258 FSCKERRYKYFFTNPCFAPVPGSSGRYNTSSTPPQAMREGWLDINAMKQGCAHLVGLHDF 317
Query: 254 RNFCKMDAA-NVHNYKR---HVTSFEISPCYI---------------SFEGNQLCAIKIR 294
RNFCK+DA+ + N++R H E+SP + + E +L + +
Sbjct: 318 RNFCKIDASKQLTNFQRRIFHADIEEVSPLSVPAFLSHPALTAPGLPASEAPKLYSFTLH 377
Query: 295 GSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
GSAFLWHQVR ++AVLF+IGQGLES D+I LLD P +P+Y MA + PLVL C F
Sbjct: 378 GSAFLWHQVRSLIAVLFLIGQGLESPDIIPQLLDIEANPTRPKYEMASDAPLVLWDCIF 436
>gi|258563566|ref|XP_002582528.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908035|gb|EEP82436.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 615
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 132/399 (33%), Positives = 194/399 (48%), Gaps = 121/399 (30%)
Query: 87 NHHFKRYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVA--------- 134
+ + R++ALK Y GQR+ G+ ++GN+ P T+E E++KAL K RL+
Sbjct: 91 SKYHTRFIALKFAYLGQRYNGYEHANGNITPLPTIEEELWKALRKARLIFPHIVENSENV 150
Query: 135 DKKESH--------------YSRCGRTDKGVSSVGQVIAIYLRSN--------------- 165
D+ S YS+CGRTD+GVS+ GQV+ + +RS+
Sbjct: 151 DESGSRSLSRPYSISWEGCDYSKCGRTDRGVSAFGQVVGVRVRSSRPKKTVEPVATPDTS 210
Query: 166 --------IKECNTNNASMGETVQEEQIE-------DEIDYVRVLNRVLPKDIRVIGWSP 210
K+ + +G V E ++E DE+ Y+++LN VLP+DIR++ W P
Sbjct: 211 TSVTPKLISKDVESPFGGLGIDVSELEVEEKWDDVADELPYIQMLNGVLPEDIRILAWCP 270
Query: 211 -APTDFSARFSCISREYKYFF-------------------------WREN-LNLSAMESA 243
P DF ARFSC R Y+YFF RE L++ AM
Sbjct: 271 RPPPDFDARFSCRERRYRYFFTQPAFCPTPGPLGFVKRPGDTPGSKMREGWLDIDAMREG 330
Query: 244 GKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI--------SPCYISFEGNQ------- 287
K+++G HDFRNFCK+DA+ + N+ R ++ +I P +++ +G Q
Sbjct: 331 AKRYIGSHDFRNFCKVDASKQITNFVRKISHADIQVLDAKNLPPAFLAQQGFQQYENVDR 390
Query: 288 --------------LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
+ + GSAFLWHQVR MVAVLF+IGQGLE ++ LLD + P
Sbjct: 391 ELRDSSDVQDPALKVYYFSVHGSAFLWHQVRHMVAVLFLIGQGLEPPSIVSQLLDVSTNP 450
Query: 334 RKPQYNMAPEIPLVLQSCDF--------DGLKFTCSLDA 364
R+P Y++A + PLVL C F DGL + + D
Sbjct: 451 RRPTYDIASDAPLVLWDCVFPKNGDENEDGLDWVYAGDP 489
>gi|451856829|gb|EMD70120.1| hypothetical protein COCSADRAFT_167047 [Cochliobolus sativus
ND90Pr]
Length = 605
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 180/368 (48%), Gaps = 104/368 (28%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRLLVA-------------D 135
R +ALK Y GQ++ GF N PT+E E++KAL KTRL+ D
Sbjct: 78 RLIALKFAYLGQKYNGFEHHKNNSTPLPTIEEELWKALVKTRLITPATTSEGEKAYERID 137
Query: 136 KKE---------------SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETV 180
KK YS+CGRTD+GVS+ GQVI + +RSN K + +T
Sbjct: 138 KKTFANWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSN-KPLPKESRPSEDTP 196
Query: 181 QEEQIE----------------------DEIDYVRVLNRVLPKDIRVIGWSP-APTDFSA 217
Q +Q + DE+ Y+++LNRVLP DIRV W P P +FSA
Sbjct: 197 QADQEDDDSILPSKQEPESPPKPFSDLIDELPYIQLLNRVLPPDIRVYAWCPNPPPEFSA 256
Query: 218 RFSCISREYKYFF----------------------------WREN-LNLSAMESAGKKFV 248
RFSC R YKYFF RE L+++AM+ + +
Sbjct: 257 RFSCKERRYKYFFTNPCFAPVPGSSGLYNSNISASSENKPKMREGWLDIAAMKKGCQHLI 316
Query: 249 GEHDFRNFCKMDAA----NVHNYKRHVTSFEISPCYI----------SFEGN------QL 288
G HDFRNFCK+DA+ N H H E+SP I + +G +L
Sbjct: 317 GLHDFRNFCKVDASKQITNFHRRIFHADIEEVSPLSIPAFLSHPALQAPDGTDTETQPKL 376
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
+ + GSAFLWHQVR +VA+LF+IGQGLES +I +LLD + P +P+Y MA + PLVL
Sbjct: 377 YSFTLHGSAFLWHQVRSLVAILFLIGQGLESPSLIPALLDISANPTRPKYEMASDAPLVL 436
Query: 349 QSCDFDGL 356
C F L
Sbjct: 437 WDCIFPHL 444
>gi|345563397|gb|EGX46398.1| hypothetical protein AOL_s00109g156 [Arthrobotrys oligospora ATCC
24927]
Length = 574
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/365 (35%), Positives = 181/365 (49%), Gaps = 92/365 (25%)
Query: 81 KMSGTLNHHFKRY----VALKVMYFGQRF----YGFASDGNMEPTVESEIFKALEKTRLL 132
K + + F+RY +ALK Y G + Y F SD + PTVE ++F+AL K RL+
Sbjct: 59 KSTAKPDFDFRRYTSRLIALKFAYIGGPYQGLEYHFGSDTPL-PTVEEKLFEALLKARLV 117
Query: 133 VA-------------------------------DKKESHYSRCGRTDKGVSSVGQVIAIY 161
D Y++CGRTD+GVS+ GQV+ +
Sbjct: 118 PPKTYYHPDGSIDTTQVFTSGSNTGIEDIGKWIDLDSWEYTKCGRTDRGVSAFGQVVGVR 177
Query: 162 LRSN------------------IKECNTNNASMGETVQEEQI-----EDEIDYVRVLNRV 198
+RSN I + +T + +++ +DE+ YV +LNR+
Sbjct: 178 VRSNRPKSKKEEILGENALVEDIDDSSTPKGPIEPAENDDETLDFEDKDELPYVTILNRL 237
Query: 199 LPKDIRVIGWSP-APTDFSARFSCISREYKYFFWREN-----------LNLSAMESAGKK 246
LP IRV+ W P P +FSARF+C +R Y YFF L++ AM++A K
Sbjct: 238 LPSTIRVLAWCPNPPENFSARFNCQARTYHYFFTNPPAPHNPGEPPRVLDIDAMKTAAKY 297
Query: 247 FVGEHDFRNFCKMDAA-NVHNYKRHV------------TSFEISPCYISFE----GNQLC 289
+ G HDFRN CK+DA+ + N+KR V +F + PC S ++
Sbjct: 298 YEGPHDFRNLCKIDASKQITNFKRRVEEADIVKVGGVTPAFSLEPCETSQRMLERRPEMY 357
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
K+ GSAFLWHQVR MVA+LF++GQ LE DV++ LLD +P KP YNMA + PLVL
Sbjct: 358 YFKLTGSAFLWHQVRHMVAILFLVGQKLEKPDVVKELLDVQNMPTKPFYNMADDRPLVLW 417
Query: 350 SCDFD 354
C FD
Sbjct: 418 DCLFD 422
>gi|255938179|ref|XP_002559860.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584480|emb|CAP92522.1| Pc13g14530 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 548
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 168/331 (50%), Gaps = 89/331 (26%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLL---------VADKKES 139
R++ALK Y GQ + G ++GN P TVE ++KAL +TRL+ +D+ E
Sbjct: 115 RFIALKFAYLGQAYNGLEHTNGNTTPLPTVEEVLWKALRRTRLISPETTSDLEPSDRAER 174
Query: 140 -------------HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE 186
YS+ GRTDKGVS+ GQVI + +R+
Sbjct: 175 VPMRPYHLYWDGCEYSKAGRTDKGVSAFGQVIGLRVRT---------------------- 212
Query: 187 DEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF--------------- 230
DE++Y+ VLNRVLP+DIRV+ W P P F ARFSC R YKYFF
Sbjct: 213 DEMNYINVLNRVLPEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFSPTPGSIGFQ 272
Query: 231 ------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDA-ANVHNYKR---HVTS 273
+RE L++ AM A K F G HDFRNFCK+D + N++R H S
Sbjct: 273 NRAQNGNGPRAEFREGWLDIEAMREAAKHFEGSHDFRNFCKLDTNKQIDNFERIIHHSIS 332
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
I Q+ + + GSAFLWHQVR MVA+LF++GQGLES ++ LLD P
Sbjct: 333 QSIP---------QVYSFNLHGSAFLWHQVRHMVAILFLVGQGLESPSIVPELLDVAKNP 383
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
RKP Y MA + PLVL C F ++ D+
Sbjct: 384 RKPTYAMADDAPLVLWDCIFPDVESGSRADS 414
>gi|428184071|gb|EKX52927.1| hypothetical protein GUITHDRAFT_161113 [Guillardia theta CCMP2712]
Length = 419
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 171/322 (53%), Gaps = 48/322 (14%)
Query: 59 LVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTV 118
L + E G K KKK +E + H R++A+++ Y G F GFAS + T+
Sbjct: 46 LAQPEEMAEQGAGKGSKKKEREGRKFDFSKHASRHIAIELSYLGWDFKGFASQEDTNETI 105
Query: 119 ESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGE 178
E +F AL KT L+ + S YSRC RTDKGVS++GQV+++
Sbjct: 106 EGHLFAALSKT-CLIPSRASSSYSRCARTDKGVSALGQVVSL------------------ 146
Query: 179 TVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLS 238
E+ Y++++N +LP IR I W F+C R YKYFF R ++N+
Sbjct: 147 --------RELPYLQMINALLPPTIRAIAW----------FACSMRSYKYFFVRADMNIE 188
Query: 239 AMESAGKKFVGEHDFRNFCKMDAANVH-NYKRHVTSFEISPCYISFEGNQ--LCAIKIRG 295
M +A K G HDFRNFCK+D++ + + RH+ SF+I P ++ + ++ I+
Sbjct: 189 GMRAAAKLLEGSHDFRNFCKIDSSKPNLTFTRHIISFDIIPVVEQETESRYSVWSMDIKA 248
Query: 296 SAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF-- 353
+AFLWHQVR M A+LF +G+G + + +LD + P+KP YN+A E PL+L C F
Sbjct: 249 TAFLWHQVRAMAAILFAVGRGELEENFVSYMLDISRCPQKPHYNIASEEPLLLYHCHFPR 308
Query: 354 DGLKFTCSLDAGHDLRLHLRNE 375
D + F L + H+RNE
Sbjct: 309 DLVCFVPPLAS------HVRNE 324
>gi|429862259|gb|ELA36915.1| pseudouridylate synthase 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 500
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 182/339 (53%), Gaps = 53/339 (15%)
Query: 63 NRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNMEPTVESE 121
++ + KK K K + + R++ALK+ Y G+R+ GF +D PT+E E
Sbjct: 35 SKAVDGAAAPPPAKKRKTKKGIDPSRYSTRFIALKLAYLGKRYGGFEYADSAALPTIEGE 94
Query: 122 IFKALEKTRLLVADKKES------HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNAS 175
++ AL K L+ + YS+CGRTD+GVS+ GQV+ + +RS+ K + +
Sbjct: 95 LWNALTKACLIFPEDPAVVNFDCCEYSKCGRTDRGVSAFGQVLGLRVRSS-KPLPKPDPA 153
Query: 176 MGETVQEEQI-----------------------EDEIDYVRVLNRVLPKDIRVIGWSPAP 212
E + + E EIDY++ LNR+LP DIR++ W P+P
Sbjct: 154 PTEGDADTPMEGTAEKTETEEETKKKPEVEWSDEKEIDYIKTLNRLLPDDIRILAWCPSP 213
Query: 213 TD-FSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRH 270
FSARFSC R+ R + AM++A + FVG+HDFRNFCK+D + N++R
Sbjct: 214 PPGFSARFSCEERQ------RATSTIEAMDAAAQLFVGDHDFRNFCKVDGGKQITNFERR 267
Query: 271 --------VTSFEISPCYI---SFEGNQLCAI---KIRGSAFLWHQVRCMVAVLFMIGQG 316
V + Y+ S +G++L + IRG+AFLWHQ+R MV++LF++GQ
Sbjct: 268 MFEAGVEEVKDVGSALPYLGLSSADGSKLPKVYSFNIRGTAFLWHQIRHMVSILFLVGQR 327
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355
LE +++ LLD PRKP Y++A + PLVL +C F G
Sbjct: 328 LEKPELVAELLDVEKTPRKPNYDLANDTPLVLWNCVFPG 366
>gi|385300994|gb|EIF45229.1| putative trna pseudouridine synthase [Dekkera bruxellensis
AWRI1499]
Length = 443
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 125/339 (36%), Positives = 190/339 (56%), Gaps = 44/339 (12%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDG--NMEPTVESEIFKALEKTRLL- 132
+K+ ++ + + R++ALK Y G + G A G PTVE I KAL++ RL+
Sbjct: 69 RKINKQRGIDFSKYETRHIALKFSYLGWDYQGLALQGLPTDRPTVEEVIIKALQQVRLVQ 128
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED----- 187
A+ + +SRCGRTD+GVS++ QVI++ +RS + +EQ++D
Sbjct: 129 SANPADFLFSRCGRTDRGVSAMNQVISLRVRSRL--------------TKEQLKDPANDN 174
Query: 188 -EIDYVRVLNRVLPKDIR--VIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244
E+DY+++LN VLP DIR I P P F ARFSC R+YKY F + L++ M A
Sbjct: 175 LELDYIKMLNHVLPADIRFHAICVRP-PKGFDARFSCQWRQYKYIFNSKGLDIDRMRKAA 233
Query: 245 KKFVGEHDFRNFCKMDAA-NVHNYKRHV-----TSFEISPCYISFEGNQLCAIKIRGSAF 298
+ FVG+HDFRNFCK+D + + N+ R V S E P + F+ ++GSAF
Sbjct: 234 QMFVGQHDFRNFCKVDGSKQLKNFTREVYSTAIESLEQEPGFSVFD--------LKGSAF 285
Query: 299 LWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD--GL 356
LWHQVR MVAVL IGQ LE +++ LL+ N P +P Y +A +IPL+L C +D +
Sbjct: 286 LWHQVRYMVAVLLTIGQKLEEPTIVKDLLNINMYPCRPAYKLAHDIPLILYDCGYDPQTV 345
Query: 357 KFTCSLDAGHDLRLHLRNECQVYQLQAAI--FHEALLNC 393
K+T + +L L Y++++ + + + ++ C
Sbjct: 346 KWTAGPSRKYVSQLALDGLTNNYKVKSIVVEYMQKIVEC 384
>gi|242781979|ref|XP_002479909.1| pseudouridylate synthase 3 [Talaromyces stipitatus ATCC 10500]
gi|218720056|gb|EED19475.1| pseudouridylate synthase 3 [Talaromyces stipitatus ATCC 10500]
Length = 621
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 135/407 (33%), Positives = 186/407 (45%), Gaps = 131/407 (32%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLL 132
KK+ +M T H R++ALK Y GQR+ GF ++GN+ P T+E EI+KAL KTRL+
Sbjct: 74 KKIPREMDHTKYH--TRHIALKFAYLGQRYNGFEHANGNITPLPTIEEEIWKALRKTRLI 131
Query: 133 VADKKES---------------------HYSRCGRTDKGVSSVGQVIAIYLRS------- 164
S YS+CGRTD+GVS+ GQVI I +RS
Sbjct: 132 FPTTSSSMELDFNKDDRARPFDLSWDGCQYSKCGRTDRGVSAFGQVIGIRVRSARPKRIV 191
Query: 165 ---------------------------NIKECNTNNASMGETVQE---------EQIEDE 188
+I + N +V+ + I DE
Sbjct: 192 ETATATSTTATTATSGETTVQQVDVEASIVDSTEENIGSAPSVEANETEVDDGWDDIRDE 251
Query: 189 IDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFFWRENLN----------- 236
+ Y+++LN VLP+DIR++ W P P DF ARFSC R+Y+YFF + N
Sbjct: 252 LPYIQILNGVLPRDIRILAWCPNPPPDFDARFSCRERQYRYFFTQPAFNPVPGELGFLRS 311
Query: 237 ------------------LSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKR-------- 269
+ AM A K+++G HDFRNFC++D + + N++R
Sbjct: 312 AAHHRGIAKKELRDGWLDIEAMREACKQYIGRHDFRNFCRVDTSKQIENFERIIYHASID 371
Query: 270 ----------HVTSFEISPCY----ISFEGNQ---------LCAIKIRGSAFLWHQVRCM 306
V S E P + EGN + + GSAFLWHQVR M
Sbjct: 372 LVDPNQHPLGFVGSKEFQPTRNLVDLDNEGNVNEERPSTPLVYTFTLHGSAFLWHQVRHM 431
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
VA+LF++GQG+E ++ LLD + PRKP Y MA + PLVL C F
Sbjct: 432 VAILFLVGQGVEDPSIVSELLDVSKHPRKPTYEMASDAPLVLWDCVF 478
>gi|320591696|gb|EFX04135.1| pseudouridylate synthase 3 [Grosmannia clavigera kw1407]
Length = 522
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 168/326 (51%), Gaps = 71/326 (21%)
Query: 81 KMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNMEPTVESEIFKALEKTRLLVADKKES 139
K S + + R++ALK+ Y G+R+ GF PT+E E++KAL K L+ S
Sbjct: 47 KKSMDPSRYASRFIALKLAYLGKRYGGFEYQPSGALPTIEEELWKALTKACLVFPAPGAS 106
Query: 140 ---------HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID 190
YS+CGRTD+GVS+ GQV+A+ +RSN +
Sbjct: 107 ADEVDLVRCEYSKCGRTDRGVSAFGQVVALRVRSNKRAV--------------------- 145
Query: 191 YVRVLNRVLPKDIRVIGW-SPAPTDFSARFSCISREYKYFFWREN--------------- 234
Y +VLNR+LP DIRV+ W + P DFSARFSC R+Y+YFF +
Sbjct: 146 YAKVLNRLLPPDIRVLAWCATPPADFSARFSCRERQYRYFFTQPAYFTEDGSRPGPTSSA 205
Query: 235 ----------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTS---FEISPCY 280
L++ AM A +FVG HDFRNFCK+D + + N++R + + E++ +
Sbjct: 206 GSASQPPDGWLDIDAMRDAATRFVGLHDFRNFCKVDPSKQITNFERRIFAAGITEVADVH 265
Query: 281 ISFE----------GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
S ++ + +RGSAFLWHQ+R MVAVLF++GQG E DV+ LL
Sbjct: 266 SSLRCLSSSASSVSFPRVYSFDVRGSAFLWHQIRHMVAVLFLVGQGREPADVVSQLLGVA 325
Query: 331 GIPRKPQYNMAPEIPLVLQSCDFDGL 356
P +P Y MA E PLVL C F L
Sbjct: 326 AQPGRPNYPMADETPLVLWDCIFPPL 351
>gi|353237530|emb|CCA69501.1| related to DEG1-pseudouridine synthase [Piriformospora indica DSM
11827]
Length = 423
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 176/325 (54%), Gaps = 42/325 (12%)
Query: 72 KTGKKKVKEKMSGTLNH-----------HFKRYVALKVMYFGQRFYGFASDGNMEP--TV 118
++ KK + +G +H + +R +ALK Y G + G A P TV
Sbjct: 20 ESKKKPTAQTENGPTSHPNNPRLFNFQAYAQRKIALKFCYHGWDYNGLAYQVTPTPLPTV 79
Query: 119 ESEIFKALEKTRLL--VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTN---- 172
E +F AL K RL+ A + +SRCGRTD+GVSS GQV+A+ +R +++ T
Sbjct: 80 EGVLFDALCKARLIDREAGFEGCDWSRCGRTDRGVSSAGQVVALRMRCSLRPVETVQPFE 139
Query: 173 ----NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKY 228
+ + E E E+ Y++VLNR+LP IRV+ W+P FSARF+C R YKY
Sbjct: 140 EAEVTPPTQPSTKSEPPELEVKYIQVLNRILPPSIRVLAWAPVDDTFSARFNCRYRHYKY 199
Query: 229 FFWREN-----LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISP-CYI 281
FF N LN+ M +A VGEHDFRNFCK+D + + Y R V S IS
Sbjct: 200 FFQPLNPPASPLNIDKMRNAASLLVGEHDFRNFCKLDGSKQIERYDRRVVSATISRLTSP 259
Query: 282 SFEGNQ-LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN--------GI 332
+ +G + + + GSAFLWHQVR ++ VLF++GQGLE ++ +LL+T+ +
Sbjct: 260 TIQGEKPMYVFDLVGSAFLWHQVRHIMGVLFLVGQGLEDASIVNALLNTDSSRPSFDPSL 319
Query: 333 PR---KPQYNMAPEIPLVLQSCDFD 354
P +P Y+MA +PLVL C FD
Sbjct: 320 PLLECRPLYDMAEGLPLVLWECGFD 344
>gi|242008043|ref|XP_002424822.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis]
gi|212508372|gb|EEB12084.1| tRNA pseudouridine synthase, putative [Pediculus humanus corporis]
Length = 430
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 160/280 (57%), Gaps = 16/280 (5%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
KR++ LK YFG GF N T+E +F AL+K L+ + + S+Y +CGRTDKG
Sbjct: 61 KRHIFLKFCYFGWDTSGFVIQENTSNTIEQFMFDALKKC-CLIENIETSNYQKCGRTDKG 119
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
VS+ QVI++ +RS ++ N NA E EI+Y +LNR+LP I+ W+
Sbjct: 120 VSAFSQVISLDVRSKLENPNHENA-----------EQEIEYCSMLNRLLPPFIKCYSWAH 168
Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKR 269
+D +R C R YKY+F + NL+++ M A K +G HDFRN CKMD AN + N+ R
Sbjct: 169 VGSDVGSRHDCSERTYKYYFPKGNLDINLMREAAKSLLGSHDFRNLCKMDVANGITNFNR 228
Query: 270 HVTSFEISPCYISFE---GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
++ +I PC E G Q +I+ FL+HQ+R +++VL ++GQ ES D+I L
Sbjct: 229 NIIYADIKPCSFLLEKQSGYQFYIFEIKSKCFLYHQIRSIMSVLLLVGQKKESPDIINDL 288
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGH 366
LD N P KPQY++A +PL L F + +++ +
Sbjct: 289 LDINKNPAKPQYDLALPMPLNLFEAQFTSISLKWNVNENN 328
>gi|134056983|emb|CAK44330.1| unnamed protein product [Aspergillus niger]
Length = 517
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/307 (39%), Positives = 160/307 (52%), Gaps = 60/307 (19%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTR---LLVADKKESHYSRCG 145
R++ALK Y GQR+ G ++GN P T+E E++KAL KTR + YS+ G
Sbjct: 107 RFIALKFAYLGQRYNGLEHANGNATPLPTIEEEMYKALRKTRETKPYYINWDGCEYSKAG 166
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTD+GVS+ GQVI I +R +E+ YV +LN+VLP+DIRV
Sbjct: 167 RTDRGVSAFGQVIGIRVR-----------------------NELPYVSMLNKVLPEDIRV 203
Query: 206 IGWSPAPTD-FSARFSCISREYKYFF-------------------------WREN-LNLS 238
+ W P P + F ARFSC R YKYFF RE L++
Sbjct: 204 LAWCPRPPEGFDARFSCGERHYKYFFTQPAFSPTPGASGFVPRDGTGKPPKLREGWLDIE 263
Query: 239 AMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSA 297
AM A K F G HDFRNFCK+D + ++ R + +P + Q+ + GSA
Sbjct: 264 AMRKAAKYFEGTHDFRNFCKLDVTKQIESFYRDIFQSSAAPLPTA---AQVYVFHLEGSA 320
Query: 298 FLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLK 357
FLWHQVR MV VLF++GQGLE +++ LLD PRKP Y MA + PLVL C + K
Sbjct: 321 FLWHQVRHMVNVLFLVGQGLEEPSIVQDLLDVTKNPRKPTYEMASDAPLVLWDCIYPDKK 380
Query: 358 FTCSLDA 364
D+
Sbjct: 381 SGSRADS 387
>gi|169604989|ref|XP_001795915.1| hypothetical protein SNOG_05510 [Phaeosphaeria nodorum SN15]
gi|160706683|gb|EAT86574.2| hypothetical protein SNOG_05510 [Phaeosphaeria nodorum SN15]
Length = 475
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/372 (36%), Positives = 187/372 (50%), Gaps = 92/372 (24%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRLL-------------VAD 135
R +ALK Y GQ++ GF N PT+E E++KAL KTRL+ AD
Sbjct: 72 RLIALKFAYLGQKYNGFEHHKNNSTPLPTIEEELWKALVKTRLINPIPTTGDTADYNKAD 131
Query: 136 KKE---------------SHYSRCGRTDKGVSSVGQVIAIYLRSN-------IKECNTN- 172
+K YS+CGRTD+GVS+ GQVI + +RSN KE +
Sbjct: 132 RKTFATWDREGADVNWDGCEYSKCGRTDRGVSAFGQVIGVRVRSNRPLPKQPAKEPESQE 191
Query: 173 NASMGE-------------TVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSAR 218
N E T ++ DE+ Y+++LNRVLP DIRV W P P +FSAR
Sbjct: 192 NPPAAEDELDILDSEPDAATKHFNEVTDELPYIQLLNRVLPPDIRVYAWCPNPPENFSAR 251
Query: 219 FSCISREYKYFF---------------------WRE-NLNLSAMESAGKKFVGEHDFRNF 256
FSC R YKYFF RE L+++AM+ A + +G HDFRN
Sbjct: 252 FSCKERRYKYFFTNPCFAPVPGSAGTYHTPSSPMREGTLDIAAMQLACESLIGLHDFRNM 311
Query: 257 CKMDAA-NVHNYKRHVTSFEIS-------PCYISF------EGNQLCAIKIRGSAFLWHQ 302
CK+DA+ + N+KR + I P Y+S + ++ A + GSAFLWHQ
Sbjct: 312 CKIDASKQLTNFKRRIFYAGIEEVSPLSVPSYLSHGAIAPPDQPKMYAFVLHGSAFLWHQ 371
Query: 303 VRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF---DGLKFT 359
VR +VA+LF+IGQ LE +++ LLD P +P+Y MA + PLVL C F D ++ +
Sbjct: 372 VRSIVAILFLIGQRLEPPSLVQQLLDIETNPTRPKYEMASDAPLVLWDCIFPHADEVQTS 431
Query: 360 CSLDAGHDLRLH 371
+ G+ RL
Sbjct: 432 EERETGYQDRLQ 443
>gi|242215757|ref|XP_002473691.1| predicted protein [Postia placenta Mad-698-R]
gi|220727176|gb|EED81103.1| predicted protein [Postia placenta Mad-698-R]
Length = 495
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 171/326 (52%), Gaps = 52/326 (15%)
Query: 89 HFKRYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLL--VADKKESHYSRC 144
H +R +ALK Y G + G F PTVE+ +F AL TRL+ + + +C
Sbjct: 45 HPRRKIALKFTYNGADYSGLEFQKTPTTLPTVEAVLFDALVHTRLIDPATGFEGCGWEKC 104
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNN-------------------ASMGE------- 178
GRTD+GVS+ GQVI++++RS + + A MGE
Sbjct: 105 GRTDRGVSAAGQVISLWVRSALGQARVRTSLEDANVMDVHPTGLEGDLALMGEWDETPTN 164
Query: 179 --TVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLN 236
Q +E+ Y+ +LN VLP IRVI WSP DFSARFSC R YKYFF E L+
Sbjct: 165 AARPATPQATNELRYITLLNNVLPPTIRVIAWSPVGPDFSARFSCRYRHYKYFFSPEGLD 224
Query: 237 LSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRG 295
L+AM+ A + VGEHDFRN CK+D + + + R + S ++P + L + + G
Sbjct: 225 LAAMQDAADRLVGEHDFRNLCKLDPSKQLTTFARKILSARLNPAQAD-GASTLYVLDLIG 283
Query: 296 SAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG----------------IPRKPQYN 339
+AFL++QVR ++AVLF++G LE VI++LL+ + IP KP+Y
Sbjct: 284 TAFLYNQVRHIMAVLFLVGTKLEHPSVIDALLNVDAAQPRAPSRPGEPFPQVIPSKPEYQ 343
Query: 340 MAPEIPLVLQSCDFDGLKFTCSLDAG 365
MA +PL+L C +D K T S G
Sbjct: 344 MADPLPLMLWECAYD--KDTVSWRTG 367
>gi|327307008|ref|XP_003238195.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
gi|326458451|gb|EGD83904.1| tRNA pseudouridine synthase [Trichophyton rubrum CBS 118892]
Length = 614
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 144/455 (31%), Positives = 207/455 (45%), Gaps = 122/455 (26%)
Query: 18 ALQNRVKELEAD-NAKLLSKLSL--CRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTG 74
+L NR+ ELE N + +S+ C K++ + T R T S +T
Sbjct: 17 SLINRIHELERQLNQCPQNAVSIPSTECLKVDKGLGQAERTPTDGRPRERSTSSNPSRTS 76
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNME--PTVESEIFKALEKTRL 131
KK + K+ + + R++A+K Y G+R+ G ++GN PT+E E++KAL KTRL
Sbjct: 77 SKK-RRKIDPS--KYSTRHIAIKFAYLGKRYNGLEHANGNYTEVPTIEEELWKALRKTRL 133
Query: 132 LVADKKES----------------------HYSRCGRTDKGVSSVGQVIAIYLRS----- 164
+ K+ YS+CGRTDKGVS+ GQVI I +RS
Sbjct: 134 IFPTHKDCTEEFSGKDNSPSRPYAIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPAE 193
Query: 165 ---------------------NIKECNTNN--ASMGETVQEEQIEDEIDYVRVLNRVLPK 201
+ + NT + + GE + I DE+ Y+++LN LP+
Sbjct: 194 PNPPVELKGGDVVNSVVATESGMGDKNTQSGVSDTGEAKGWDDIADELPYIQILNGALPE 253
Query: 202 DIRVIGWSP-APTDFSARFSCISREYKYFFW----------------------------R 232
DIRV+ W P P DF ARFSC R Y+YFF R
Sbjct: 254 DIRVLAWCPHLPPDFDARFSCRQRRYRYFFTQPAFCPTPGTRGIVRSPELKDDLSLARPR 313
Query: 233 EN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEIS------------- 277
E L++ AM A + FVG HDFRNFCK+D + + N+ R + +I
Sbjct: 314 EGWLDIEAMRKAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQ 373
Query: 278 -PCYISFE------------------GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
P + FE ++ + + G+AFLWHQ+R MV +LF++GQGLE
Sbjct: 374 MPGFEPFENGPRNTGVPGSINDINSAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLE 433
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
++ LLD PR+P Y MA + PLVL C F
Sbjct: 434 HPSIVPELLDVTKNPRRPVYEMASDSPLVLWDCIF 468
>gi|344228480|gb|EGV60366.1| hypothetical protein CANTEDRAFT_127546 [Candida tenuis ATCC 10573]
Length = 415
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/312 (36%), Positives = 172/312 (55%), Gaps = 26/312 (8%)
Query: 86 LNHHFKRYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLLVADKKES--HY 141
+ + R+VA++ Y G + G F + PTVE +I KAL +L V D + +
Sbjct: 46 FSKYHTRFVAIRFAYLGWNYNGLAFQFEDTPLPTVEEQILKALATAKL-VKDAEPGCCDF 104
Query: 142 SRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPK 201
SRCGRTDKGVS++ QVI++ +RS+ + S + EI Y+ +LN +LP
Sbjct: 105 SRCGRTDKGVSAMNQVISLRVRSDFSPEDQQLQSNDDK--------EIPYIFILNSILPP 156
Query: 202 DIRVIGWS-PAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMD 260
DIRV S P F ARFSC R Y+Y +E L+L +++A K+ G HDFRNFCK+D
Sbjct: 157 DIRVTAISLRPPPKFDARFSCEYRHYRYLIAKEGLDLDLLQAAAAKYKGSHDFRNFCKID 216
Query: 261 AA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + NY+R + +I P ++ + ++GSAFLWHQVR MVAV+ IGQG E
Sbjct: 217 GSKQITNYRREIYHSQIIPW-----DDEFVMLDLKGSAFLWHQVRYMVAVILSIGQGHEQ 271
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQV- 378
+ +I++L D P KP Y +A ++PL+L C + +++ D + R ++
Sbjct: 272 MSLIDNLFDVEKYPSKPNYELANDVPLILYDCVYPEMEWLVPSDFKRSFFKNSREYAKLN 331
Query: 379 -----YQLQAAI 385
YQL+A +
Sbjct: 332 GQVLDYQLKAQV 343
>gi|146093784|ref|XP_001467003.1| putative pseudouridine synthase A-like protein [Leishmania infantum
JPCM5]
gi|134071367|emb|CAM70054.1| putative pseudouridine synthase A-like protein [Leishmania infantum
JPCM5]
Length = 499
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 169/300 (56%), Gaps = 17/300 (5%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA 134
+KK + + + + + R +AL++ Y G G A + TVE + AL + RL+
Sbjct: 43 RKKQRTERAFLFDRYPSRKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPE 102
Query: 135 DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRV 194
D ++ RCGRTDKGVS++G +++ R++ T E +DY +
Sbjct: 103 DGPH-NFGRCGRTDKGVSALGNALSLTARASC------------TADAEPQLPPLDYCSM 149
Query: 195 LNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFR 254
LN VLP IR++G + F ARFSC+ R Y+Y+F+ LNL AM+ A F+G H+FR
Sbjct: 150 LNNVLPSTIRIVGCALVDDTFDARFSCVHRTYRYYFFHRGLNLEAMQEAAAFFLGTHNFR 209
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
NFCKMD NV N+ R V S + P E + ++IR ++FL+HQ+RC++ VLF++G
Sbjct: 210 NFCKMDVVNVSNFVRTVFSVGLHPSEALPE--LISYLEIRANSFLYHQIRCIMEVLFLVG 267
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRN 374
+GLE V+++LL+ RKP Y +A PLVL C FD +++ S A H + L++
Sbjct: 268 RGLEVPSVVQTLLERGD--RKPTYPLADGTPLVLWDCGFDNVQWQMSHCAFHAMEQELQD 325
>gi|358389001|gb|EHK26594.1| hypothetical protein TRIVIDRAFT_134370, partial [Trichoderma virens
Gv29-8]
Length = 462
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 170/322 (52%), Gaps = 73/322 (22%)
Query: 92 RYVALKVMYFGQRFYGF--ASDGNMEPTVESEIFKALEKTRLLVADKKE------SHYSR 143
RY+ALK+ Y G+ + GF + GN +P++E E++ AL K L+ + ++ YS+
Sbjct: 19 RYIALKLAYLGKNYGGFEFQAMGN-QPSIEEELWNALTKACLIFPEDEKLVDFDCCEYSK 77
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDI 203
CGRTD+GVS+ GQ N +T + I DEI Y VLNR+LPK+I
Sbjct: 78 CGRTDRGVSAFGQQ------------EENKKPEVQTKPFDDIRDEIPYPHVLNRLLPKEI 125
Query: 204 RVIGWSPA-PTDFSARFSCISREYKYFFWREN-------------------------LNL 237
R++ W P+ P DFSARFSC R+Y+YFF + L++
Sbjct: 126 RILAWCPSPPPDFSARFSCRERQYRYFFTQPAFAPTPSHIEGVPMKQRTRKIMKPGWLDI 185
Query: 238 SAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI------------------SP 278
AM A K++ GEHDFRN CK+D A + N+KR + +I +P
Sbjct: 186 EAMRDAAKRYEGEHDFRNLCKIDPAKQITNFKRRMFESDIVEVKDAASALPYLKAAGFAP 245
Query: 279 CYISFEGNQLCAI-------KIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
++ + + + +RGSAFLWHQ+R MVAVLF++GQGLE ++ LLD
Sbjct: 246 EDVALDDSPSGGVYPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGLEQPSLVSELLDVEK 305
Query: 332 IPRKPQYNMAPEIPLVLQSCDF 353
PR+P Y MA E+PLVL C F
Sbjct: 306 NPRRPNYVMADEVPLVLWDCIF 327
>gi|294901661|ref|XP_002777462.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
gi|239885099|gb|EER09278.1| tRNA pseudouridine synthase, putative [Perkinsus marinus ATCC
50983]
Length = 387
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 177/349 (50%), Gaps = 38/349 (10%)
Query: 64 RKTESGGCKTGKKKVKEKMSGTLNHHFKRY-VALKVMYFGQRFYGFASDGNMEP----TV 118
R + KTG+ +K GT F +ALKV Y + N E TV
Sbjct: 23 RGIDWSTAKTGRFVMKFAYVGTRQASFPSTTMALKVCVEAVLRYAGVAWQNQEAFGVNTV 82
Query: 119 ESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGE 178
E+E+FK L KT L+ + +SRCGRTDKGV + G + LR +K T
Sbjct: 83 ENELFKGLVKT-CLIESRMSCDFSRCGRTDKGVHARGNYATLRLR--LKPDGT------- 132
Query: 179 TVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD-FSARFSCISREYKYFFWRENLNL 237
E Y++++NRVLP DIRV+ P+D F ARFSC SR YKYFF L+L
Sbjct: 133 ---------EFPYIQMINRVLPDDIRVLRICSVPSDDFDARFSCKSRTYKYFFPSTGLDL 183
Query: 238 SAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSA 297
M A ++ VG+HD+RNFC+MD N++R + SFEI G+ + I GSA
Sbjct: 184 EVMAEAAQRLVGQHDYRNFCRMDVEQTTNFERTIYSFEIC------NGDVISHAVITGSA 237
Query: 298 FLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLK 357
FLWHQVRCM+ VL +IG+GLE +VI+ L D N P KP Y++A LVL C +D
Sbjct: 238 FLWHQVRCMMEVLMLIGKGLEKPEVIDMLFDINKTPGKPSYDLADGAGLVLFDCKYDAEW 297
Query: 358 FTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCL--PLANGLEIGS 404
F +++ + Q A+ L CL P+A E+ S
Sbjct: 298 FDQTVEDDEEAVAEFSRAAIAAQRDLAV-----LQCLAGPIAKTTEVQS 341
>gi|401884318|gb|EJT48486.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 2479]
Length = 532
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 124/324 (38%), Positives = 166/324 (51%), Gaps = 51/324 (15%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNMEPTVESEIFKALEKTRLLVA 134
+K KE + R++AL V Y G + G A + PTVE E+ KALEKT L+
Sbjct: 81 RKKKEPVQFQWGAQSTRHIALLVSYLGWPYSGLAIQPTSHYPTVEGELLKALEKTYLVGP 140
Query: 135 DKKES-HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMG--ETVQEEQI------ 185
E+ +SRCGRTD+GVS GQV+ +++RS KE + G + EE++
Sbjct: 141 GGWEACGFSRCGRTDRGVSGAGQVLNLWVRSTRKEGDGGYPLNGTWKPPSEERVPRQSKA 200
Query: 186 -----------------------------EDEIDYVRVLNRVLPKDIRVIGWSPAPTDFS 216
+ ++ Y R+LN VLP DIRV+ WSPAPTDF
Sbjct: 201 VEGMGEGAEGENTDALAEKQEKKKAKAPPQMDLGYPRLLNSVLPDDIRVLAWSPAPTDFD 260
Query: 217 ARFSCISREYKYFF------WRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKR 269
+RFSC R YKY F E L+L M A K +GEHDFRNFCK+D + + ++KR
Sbjct: 261 SRFSCDFRHYKYAFHIVPSPGVEPLDLDLMTEAAKLLLGEHDFRNFCKVDGSKQIESHKR 320
Query: 270 HVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
V Y E + + G+AFLWHQVR ++AVLF++G LE V+ L+D
Sbjct: 321 TVLQ-----AYFEKESEGVYIFNLVGNAFLWHQVRHIMAVLFLVGSRLEPPSVVTDLMDV 375
Query: 330 NGIPRKPQYNMAPEIPLVLQSCDF 353
P K +Y MA IPL L C F
Sbjct: 376 ERFPGKLKYKMADPIPLRLHECGF 399
>gi|358057869|dbj|GAA96114.1| hypothetical protein E5Q_02775 [Mixia osmundae IAM 14324]
Length = 834
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 136/376 (36%), Positives = 192/376 (51%), Gaps = 73/376 (19%)
Query: 81 KMSGTLNHHF------KRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLL 132
+ SG N F +R VAL+ Y G + G AS P TVE I A+ K RL+
Sbjct: 89 RPSGKANKTFDFRRFARRKVALRFCYDGWDYCGLASQSTPTPLPTVEDTILAAMRKARLI 148
Query: 133 VADKKESH-----YSRCGRTDKGVSSVGQVIAIYLRSNI------KEC------------ 169
A +SRCGRTD+GVS+ QVIA+YLRS + +EC
Sbjct: 149 PAQGDAPSLESLGFSRCGRTDRGVSAANQVIALYLRSQLSLEQLREECGDDARMSYNEAL 208
Query: 170 NTNNASMGETVQ-------------EEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFS 216
N + A TV +++ DE+DYV +LNR+LP IR++GWS +F
Sbjct: 209 NRDAARQRATVPGSGAITRVDCGPAPQRMYDELDYVGILNRILPASIRILGWSAVDAEFD 268
Query: 217 ARFSCISREYKYFFWRE--NLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTS 273
RF+C+ R+YKYFF L L M A + GEHDFR+ CK+DA+ + NY+R V S
Sbjct: 269 GRFACLWRQYKYFFSLSPLGLELDPMREAASRLEGEHDFRHMCKIDASKQITNYRRLVLS 328
Query: 274 FEISPCYISF----EGNQ-LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL-- 326
I P +G Q L + ++G+AFL++QVR M+A+LF++G ES DVI++L
Sbjct: 329 ATIDPVETGLGRDAKGQQDLYVLNLKGTAFLYNQVRHMMALLFLVGSKRESPDVIDALFN 388
Query: 327 --------LDTNGIPRKPQYNMAPEIPLVLQSCDF-DGL---KFTCSLDAGHDLRLHLRN 374
L T + KP Y MA ++PLVL C + DG+ + S+ + ++ RL L +
Sbjct: 389 VATEADPKLATGALLGKPAYEMADDLPLVLWDCGYPDGMLHWESDGSVASSNESRLALSS 448
Query: 375 ECQVYQLQAAIFHEAL 390
A+ H AL
Sbjct: 449 -------TPAVLHAAL 457
>gi|398019410|ref|XP_003862869.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
gi|322501100|emb|CBZ36178.1| pseudouridine synthase A-like protein, putative [Leishmania
donovani]
Length = 499
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 168/299 (56%), Gaps = 17/299 (5%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD 135
KK + + + + + R +AL++ Y G G A + TVE + AL + RL+ D
Sbjct: 44 KKQRTERAFLFDRYPSRKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPED 103
Query: 136 KKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVL 195
++ RCGRTDKGVS++G +++ R++ T E +DY +L
Sbjct: 104 GPH-NFGRCGRTDKGVSALGNALSLTARASC------------TADAEPQLPPLDYCSML 150
Query: 196 NRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRN 255
N VLP IR++G + F ARFSC+ R Y+Y+F+ LNL AM+ A F+G H+FRN
Sbjct: 151 NNVLPSTIRIVGCALVDDAFDARFSCVHRTYRYYFFHRGLNLEAMQEAAAFFLGTHNFRN 210
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FCKMD NV N+ R V S + P E + ++IR ++FL+HQ+RC++ VLF++G+
Sbjct: 211 FCKMDVVNVSNFVRTVFSVGLHPSEALPE--LISYLEIRANSFLYHQIRCIMEVLFLVGR 268
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRN 374
GLE V+++LL+ RKP Y +A PLVL C FD +++ S A H + L++
Sbjct: 269 GLEVPSVVQTLLERGD--RKPTYPLADGTPLVLWDCGFDNVQWQMSHCAFHAMEQELQD 325
>gi|358367989|dbj|GAA84607.1| pseudouridylate synthase 3 [Aspergillus kawachii IFO 4308]
Length = 609
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 145/453 (32%), Positives = 204/453 (45%), Gaps = 107/453 (23%)
Query: 19 LQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKV 78
L R+ ELE ++ + ++ ED D ++ + N+K S +KK
Sbjct: 26 LVARITELERQLHSRTAEYATPPAKQAEDAAKDAARSASSDGKVNQKEPSSPAAGAEKKK 85
Query: 79 KEKMSGTL--------NHHFKRYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALE 127
+ K + + R++ALK Y GQR+ G ++GN P T+E E++KAL
Sbjct: 86 QVKPPKPPKPRREIDPSRYNTRFIALKFAYLGQRYNGLEHANGNATPLPTIEEEMYKALR 145
Query: 128 KTRLLVADKK------ESH----------------YSRCGRTDKGVSSVGQVIAIYLRS- 164
KTRL+ ES+ YS+ GRTD+GVS+ GQVI I +RS
Sbjct: 146 KTRLIFPTDTTGDEFVESYAPRETKPYYINWDGCEYSKAGRTDRGVSAFGQVIGIRVRSA 205
Query: 165 --------------NIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
+ NT+ A+ + ++DE+ YV +LN+VLP+DIRV+ W P
Sbjct: 206 RPKRNEVVQSDENADTTMQNTDEANASADDGWDDVKDELPYVSMLNKVLPEDIRVLAWCP 265
Query: 211 APTD-FSARFSCISREYKYFF-------------------------WREN-LNLSAMESA 243
P + F ARFSC R YKYFF RE L++ AM A
Sbjct: 266 RPPEGFDARFSCGERHYKYFFTQPAFSPTPGASGFVPRDGSGKPPKLREGWLDIEAMRKA 325
Query: 244 GKKFVGEHDFRNFCKMDAA-NVHNYKRHV--------------------TSFEISPCYIS 282
K F G HDFRNFCK+D + ++ R + F+ P +
Sbjct: 326 AKYFEGTHDFRNFCKLDVTKQIESFYRDIFRADIELLDARTNPLGYVTQPEFQARPASGA 385
Query: 283 FE-----------GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
E Q+ + GSAFLWHQVR MV VLF++GQGLE +++ LLD
Sbjct: 386 DESAESSAAPLPTAAQVYVFHLEGSAFLWHQVRHMVNVLFLVGQGLEEPSIVQDLLDVTK 445
Query: 332 IPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
PRKP Y MA + PLVL C + K D+
Sbjct: 446 NPRKPTYEMASDAPLVLWDCIYPDKKSGSRADS 478
>gi|302851624|ref|XP_002957335.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
gi|300257294|gb|EFJ41544.1| tRNA pseudouridine synthase mitochondrial precursor [Volvox carteri
f. nagariensis]
Length = 642
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 160/294 (54%), Gaps = 41/294 (13%)
Query: 67 ESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKAL 126
E+ + KK+ + + + R+VAL++MY G + GFA N E T+E+ K
Sbjct: 84 EATTGQPAKKQRRAPREFDFSRYRTRFVALELMYVGWSYQGFARQDNTENTIEASSVK-- 141
Query: 127 EKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE 186
G V+A+ LRS A + E E +E
Sbjct: 142 -------------------------RGWGGVVALNLRSV--------ARVDEP--EAPLE 166
Query: 187 DEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKK 246
E DY R++N+ LP D+RV+GW+ P +F++R+ + R +L++ AM +A +
Sbjct: 167 LEYDYPRLVNKALPPDVRVLGWTAVPENFNSRY--VYHPDPPESCRYSLDIDAMRAAAAR 224
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFE--GNQLCAIKIRGSAFLWHQVR 304
FVGEHDFRNFCK D A V +++R + SF + P S +++ AI +RG+AFLWHQVR
Sbjct: 225 FVGEHDFRNFCKPDVATVRSFRRRILSFTLDPVPTSSSDGAHRVFAITVRGTAFLWHQVR 284
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
CM AVL M+G+G E +V+ LLD PRKPQY+MAPE PL+L +C F L+F
Sbjct: 285 CMAAVLLMVGRGQERPEVVSELLDVEAHPRKPQYSMAPEEPLLLYACGFSDLRF 338
>gi|406695768|gb|EKC99068.1| pseudouridylate synthase [Trichosporon asahii var. asahii CBS 8904]
Length = 532
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 161/308 (52%), Gaps = 51/308 (16%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEPTVESEIFKALEKTRLLVADKKES-HYSRCGRTDK 149
R++AL V Y G + G A + PTVE E+ KALEKT L+ E+ +SRCGRTD+
Sbjct: 97 RHIALLVSYLGWPYSGLAIQPTSHYPTVEGELLKALEKTYLVGPGGWEACGFSRCGRTDR 156
Query: 150 GVSSVGQVIAIYLRSNIKE-----------------------------------CNTNNA 174
GVS GQV+ +++RS KE NT+
Sbjct: 157 GVSGAGQVLNLWVRSTRKEGDGGYPLNGTWKPPSEERVPRQSKAVEGMGEGAEGENTDAL 216
Query: 175 SMGETVQEEQIEDEID--YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF-- 230
+ + + + ++D Y R+LN VLP DIRV+ WSPAPTDF +RFSC R YKY F
Sbjct: 217 AEKQEKKTAKAPPQMDLGYPRLLNSVLPDDIRVLAWSPAPTDFDSRFSCDFRHYKYAFHI 276
Query: 231 ----WRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEG 285
E L+L M A K +GEHDFRNFCK+D + + ++KR V Y E
Sbjct: 277 VPSPGAEPLDLDLMTEAAKLLLGEHDFRNFCKVDGSKQIESHKRTVLQ-----AYFEKES 331
Query: 286 NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIP 345
+ + G+AFLWHQVR ++AVLF++G LE V+ L+D P K +Y MA IP
Sbjct: 332 EGVYIFNLVGNAFLWHQVRHIMAVLFLVGSRLEPPSVVTDLMDVERFPGKLKYKMADPIP 391
Query: 346 LVLQSCDF 353
L L C F
Sbjct: 392 LRLHECGF 399
>gi|388583265|gb|EIM23567.1| pseudouridine synthase [Wallemia sebi CBS 633.66]
Length = 434
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 126/365 (34%), Positives = 189/365 (51%), Gaps = 46/365 (12%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLL 132
K+ K N + +R +A+K Y G + G A+ G P TVE ++ AL K RL+
Sbjct: 3 KQSKKNSRDFVFNAYSQRKIAIKFSYAGWAYNGLAAQGTPTPLPTVEQTLWDALAKGRLV 62
Query: 133 VADK--KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECN----------TNNASMGETV 180
+ K + + +SRCGRTDKGVSS GQV+A+++RS N + A +
Sbjct: 63 DSTKSFESAGWSRCGRTDKGVSSAGQVVALWVRSAYTPENKPSSIEAFKGPSQAKPIKLT 122
Query: 181 QEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF------WREN 234
+++Q E +++++LN +LP IR++ WSP F ARF C R YKY+F
Sbjct: 123 KDQQALVEYNFLQILNSLLPPTIRILAWSPVKNSFDARFDCKERHYKYYFDIKESPLGPG 182
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKI 293
L++ M A + GEHDFRNFCK+DA+ + N+ R + I P G+ L + +
Sbjct: 183 LDIHLMNGALELIKGEHDFRNFCKVDASKQIKNFHRRINDAWIDP---PEAGSNLHCVNL 239
Query: 294 RGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG---------IPRKPQYNMAPEI 344
RGSAFL+HQVRC++AVLF++G G E +++I L+ + KP Y+MA ++
Sbjct: 240 RGSAFLYHQVRCIMAVLFLVGCGREKVEIINDLMRVKPDDKDPSLPVVEGKPLYDMANDL 299
Query: 345 PLVLQSCDFDGLKFTCSLDAGHDL------RLHLRNEC-----QVY--QLQAAIFHEALL 391
PL L C FD + AG + R N Q+Y +LQ+A+ AL
Sbjct: 300 PLCLYDCVFDERSLSWRTQAGDEPTDEVEDRRQRTNTSKAIVDQLYELELQSAMLKNALS 359
Query: 392 NCLPL 396
P+
Sbjct: 360 QIKPI 364
>gi|296824052|ref|XP_002850540.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480]
gi|238838094|gb|EEQ27756.1| pseudouridylate synthase 3 [Arthroderma otae CBS 113480]
Length = 614
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 187/412 (45%), Gaps = 116/412 (28%)
Query: 58 TLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNME- 115
T V+ + S +K K++ + + R++ALK Y G+R+ G ++GN
Sbjct: 57 TTVQSRPRERSTSSNPPRKSEKKRRKIDPSKYSTRHIALKFAYLGKRYNGLEHANGNFTE 116
Query: 116 -PTVESEIFKALEKTRLLVADKKES------------------HYSRCGRTDKGVSSVGQ 156
PT+E E++KAL KTRL+ K+ YS+CGRTDKGVS+ GQ
Sbjct: 117 VPTIEEELWKALRKTRLIFPTHKDCIDDFAVPSRPQSIHWDGCQYSKCGRTDKGVSAFGQ 176
Query: 157 VIAIYLRS-------------NIKECNTNNASMGETVQE-------------------EQ 184
VI I +RS + + A++ E E +
Sbjct: 177 VIGIRVRSLKPAAPSLAAEGKGKRTTGSAAAAVSEPGDENILGSFDVSDKEEAKAPVWDD 236
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF------------- 230
I DE+ Y+++LN LP DIRV+ W P P DF ARFSC R Y+YFF
Sbjct: 237 IADELPYIQILNGALPDDIRVLAWCPHPPPDFDARFSCRQRRYRYFFTQPAFCPAPGARG 296
Query: 231 ---------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTS 273
RE L++ AM A + FVG HDFRNFCK+D + + N+ R +
Sbjct: 297 IVRAPELKQDLSLPKLREGWLDIEAMREAAQHFVGSHDFRNFCKVDTSKQITNFVRRILR 356
Query: 274 FEIS--------------PCYISFEGN------------------QLCAIKIRGSAFLWH 301
+I P + F+ + ++ + + G+AFLWH
Sbjct: 357 ADIELVDPQKTPLGFVQMPGFEQFDNSPRNTGVSESVSDTSPAAAKVYSFTVHGTAFLWH 416
Query: 302 QVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
Q+R MV +LF++GQGLE ++ LLD PR+P Y MA + PLVL C F
Sbjct: 417 QIRHMVGILFLVGQGLEPPSIVPQLLDVTKNPRRPVYEMASDSPLVLWDCIF 468
>gi|159127305|gb|EDP52420.1| pseudouridylate synthase 3 [Aspergillus fumigatus A1163]
Length = 610
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 171/354 (48%), Gaps = 92/354 (25%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G ++GN+ P T+E E++KA+ +TRL+ E+
Sbjct: 114 RFIALKFAYLGQRYNGLEHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPRE 173
Query: 140 -----------HYSRCGRTDKGVSSVGQVIAIYLRS-NIKECNTNNASMGETVQEEQ--- 184
YS+ GRTD+GVS+ GQVI I +RS K + S E Q
Sbjct: 174 LKPYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAETTSDVEMTSGGQADD 233
Query: 185 ----IEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF--------- 230
I DEI Y+ +LNRVLP DIR++ W P P F ARFSC R+YKYFF
Sbjct: 234 TWDDIADEIPYISILNRVLPDDIRILAWCPNPPPGFDARFSCRERQYKYFFTQPAFSPTP 293
Query: 231 ------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRH 270
RE L++ AM A + F G HDFRNFCK+D + + N++R
Sbjct: 294 GPLGFAMRGSGDKNASTHLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFERI 353
Query: 271 VTSFEI-----------------------SPCYISFEGNQLCA--------IKIRGSAFL 299
+ +I +P S E + + GSAFL
Sbjct: 354 IYHADIELLDPKDHPLGYVNQPGFQALQDAPARTSAESGTFTSPAAAKVYVFNLHGSAFL 413
Query: 300 WHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
WHQVR MV++LF++GQGLE ++ LLD + P KP Y MA + PLVL C F
Sbjct: 414 WHQVRHMVSILFLVGQGLEPPTIVRDLLDVSKNPCKPTYEMASDAPLVLWDCIF 467
>gi|317027085|ref|XP_001400055.2| pseudouridylate synthase 3 [Aspergillus niger CBS 513.88]
gi|350634868|gb|EHA23230.1| hypothetical protein ASPNIDRAFT_37245 [Aspergillus niger ATCC 1015]
Length = 608
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 132/372 (35%), Positives = 176/372 (47%), Gaps = 99/372 (26%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKK------ESH-- 140
R++ALK Y GQR+ G ++GN P T+E E++KAL KTRL+ ES+
Sbjct: 107 RFIALKFAYLGQRYNGLEHANGNATPLPTIEEEMYKALRKTRLIFPTDTTGDEFVESYAP 166
Query: 141 --------------YSRCGRTDKGVSSVGQVIAIYLRS---------------NIKECNT 171
YS+ GRTD+GVS+ GQVI I +RS + NT
Sbjct: 167 RETKPYYINWDGCEYSKAGRTDRGVSAFGQVIGIRVRSARPKRDEVVQSDENADTTMQNT 226
Query: 172 NNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD-FSARFSCISREYKYFF 230
+ A+ + I+DE+ YV +LN+VLP+DIRV+ W P P + F ARFSC R YKYFF
Sbjct: 227 DEANASVDDGWDDIKDELPYVSMLNKVLPEDIRVLAWCPRPPEGFDARFSCGERHYKYFF 286
Query: 231 -------------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-N 263
RE L++ AM A K F G HDFRNFCK+D
Sbjct: 287 TQPAFSPTPGASGFVPRDGTGKPPKLREGWLDIEAMRKAAKYFEGTHDFRNFCKLDVTKQ 346
Query: 264 VHNYKRHV--------------------TSFEISPCYISFE-----------GNQLCAIK 292
+ ++ R + F+ P + E Q+
Sbjct: 347 IESFYRDIFRADIELLDARTNPLGYVTQPEFQARPASGADESAESSAAPLPTAAQVYVFH 406
Query: 293 IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCD 352
+ GSAFLWHQVR MV VLF++GQGLE +++ LLD PRKP Y MA + PLVL C
Sbjct: 407 LEGSAFLWHQVRHMVNVLFLVGQGLEEPSIVQDLLDVTKNPRKPTYEMASDAPLVLWDCI 466
Query: 353 FDGLKFTCSLDA 364
+ K D+
Sbjct: 467 YPDKKSGSRADS 478
>gi|207345658|gb|EDZ72410.1| YFL001Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 315
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 118/291 (40%), Positives = 167/291 (57%), Gaps = 45/291 (15%)
Query: 137 KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED--EIDYVRV 194
++ +SRCGRTDKGVS++ QVI++ +RSN + + Q + D EI YV V
Sbjct: 13 QDYKFSRCGRTDKGVSAMNQVISLEVRSN----------LTDEEQRDPTNDSREIPYVHV 62
Query: 195 LNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252
LN++LP DIR+ + P P +F ARFSC+ R YKY F +NLN+ M A FVGE D
Sbjct: 63 LNQLLPDDIRISAVCLRPPP-NFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERD 121
Query: 253 FRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
FRNFCK+D + + N+KR + S +I P +F L GSAFLWHQVRCM+A+LF
Sbjct: 122 FRNFCKLDGSKQITNFKRTIISSKILPLSETFYCFDLI-----GSAFLWHQVRCMMAILF 176
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSC-------------DFDGLKF 358
++GQ LE +++ L D P++P Y MA +IPL+L C D+ +KF
Sbjct: 177 LVGQSLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKF 236
Query: 359 TCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSLIHL 409
T + +A L LH Y+L+AA+ + + LP AN ++I+L
Sbjct: 237 TTATEA---LTLH-------YELKAAVCN-IFKDVLPTANTNNFSKTIINL 276
>gi|401425633|ref|XP_003877301.1| putative pseudouridine synthase A-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493546|emb|CBZ28834.1| putative pseudouridine synthase A-like protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 499
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 171/300 (57%), Gaps = 19/300 (6%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD 135
KK + + + + + R +AL++ Y G G A + TVE + AL + RL+ D
Sbjct: 44 KKQRTERAFLFDRYPSRKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPED 103
Query: 136 KKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVL 195
++ RCGRTDKGVS++G +++ R++ T E +DY +L
Sbjct: 104 GPH-NFGRCGRTDKGVSALGNALSLTARASC------------TADAEPQLPPLDYCSML 150
Query: 196 NRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRN 255
N VLP IR++G + F ARFSC+ R Y+Y+F+ LNL+AM+ A F+G H+FRN
Sbjct: 151 NNVLPSTIRIVGCALVDDAFDARFSCVHRTYRYYFFHRGLNLAAMQEAAAFFLGTHNFRN 210
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCA-IKIRGSAFLWHQVRCMVAVLFMIG 314
FCKMD NV N+ R V S + P S E +L + ++IR ++FL+HQ+RC + VLF++G
Sbjct: 211 FCKMDVVNVSNFVRTVFSVGLYP---SEELPELISYLEIRANSFLYHQIRCTMEVLFLVG 267
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRN 374
+GLE+ V+++LL+ KP Y +A PLVL C FD +++ S A H + L++
Sbjct: 268 RGLEAPSVVQTLLELGDC--KPTYPLADGTPLVLWDCGFDNVQWEMSHCAFHAMEQELQD 325
>gi|326474345|gb|EGD98354.1| pseudouridylate synthase [Trichophyton tonsurans CBS 112818]
Length = 614
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 205/455 (45%), Gaps = 122/455 (26%)
Query: 18 ALQNRVKELEAD-NAKLLSKLSL--CRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTG 74
+L NR+ ELE N + +S+ C+K+ T R T S +
Sbjct: 17 SLINRIHELERQLNQCPQNAVSIPSTECQKVNKSRGQAERTPTDSQPRERSTSSNPSRKS 76
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNME--PTVESEIFKALEKTRL 131
KK + K+ + + R++A+K Y G+R+ G ++GN PT+E E++KAL KTRL
Sbjct: 77 DKK-RRKIDPS--KYSTRHIAIKFAYLGKRYNGLEHANGNYTEVPTIEEELWKALRKTRL 133
Query: 132 LVADKK-----------------ESH-----YSRCGRTDKGVSSVGQVIAIYLR------ 163
+ K E H YS+CGRTDKGVS+ GQVI I +R
Sbjct: 134 IFPTHKNCTEEFSGKDNSPSRPYEIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPAD 193
Query: 164 --------------------SNIKECNTNN--ASMGETVQEEQIEDEIDYVRVLNRVLPK 201
S + + NT N + G + I DE+ Y+++LN LP+
Sbjct: 194 PNPSADLKGGDVMDSVVATESGMADKNTQNGVSDTGAAKGWDDIADELPYIQILNGALPE 253
Query: 202 DIRVIGWSP-APTDFSARFSCISREYKYFFW----------------------------R 232
DIRV+ W P P DF ARFSC R Y+YFF R
Sbjct: 254 DIRVLAWCPHLPPDFDARFSCRQRRYRYFFTQPAFCPTPGARGIVRSPELKDDLSLARPR 313
Query: 233 EN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEIS------------- 277
E L++ AM A + FVG HDFRNFCK+D + + N+ R + +I
Sbjct: 314 EGWLDIEAMREAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQ 373
Query: 278 -PCYISFE------------------GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
P + FE ++ + + G+AFLWHQ+R MV +LF++GQGLE
Sbjct: 374 MPGFEPFENGPRNTGVPESVNDINPAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLE 433
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
++ LLD PR+P Y MA + PLVL C F
Sbjct: 434 HPSIVPELLDVTKNPRRPVYEMASDSPLVLWDCIF 468
>gi|145527104|ref|XP_001449352.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416940|emb|CAK81955.1| unnamed protein product [Paramecium tetraurelia]
Length = 414
Score = 200 bits (509), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/280 (38%), Positives = 168/280 (60%), Gaps = 34/280 (12%)
Query: 85 TLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC 144
+L+ F R VA K+ Y G ++G N + T+E+ +FKAL++ R+ + ++ + +Y+R
Sbjct: 43 SLDQKFTR-VAFKLAYVGINYHGLEQQINQQNTIENHLFKALQRVRM-IDNRDDCNYTRA 100
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
GRTDKGVS++G V+A+ +R +G++ D++ Y ++LNRVLP+DI+
Sbjct: 101 GRTDKGVSAIGNVVALNVRK-----------IGKS-------DKL-YAQILNRVLPEDIQ 141
Query: 205 VIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANV 264
++ F+AR+ CI R YKY+F++ + N+ M A F+GEHDFRNFCK+D
Sbjct: 142 ILDECIVDEKFNARYDCIKRVYKYYFYKMDYNIELMTEAMLLFIGEHDFRNFCKLDVIAN 201
Query: 265 HNYKR---HVTSFEISP-----CYISFEGN---QLCAIKIRGSAFLWHQVRCMVAVLFMI 313
N+ R ++T E+ P C F+ + +L + I G+AFLWHQ+R M+AVLF+I
Sbjct: 202 QNFVRTIMNITIEEVFPENAPRCSTLFKDDDRLRLYCVTIEGNAFLWHQIRYMMAVLFLI 261
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G+G+E VI L KP Y MAP+ PLVL +C+F
Sbjct: 262 GKGIEKSSVITDLF--TKFDGKPNYQMAPDYPLVLHNCEF 299
>gi|367035286|ref|XP_003666925.1| hypothetical protein MYCTH_58299 [Myceliophthora thermophila ATCC
42464]
gi|347014198|gb|AEO61680.1| hypothetical protein MYCTH_58299 [Myceliophthora thermophila ATCC
42464]
Length = 558
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/313 (40%), Positives = 157/313 (50%), Gaps = 63/313 (20%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEPTVESEIFKALEKTRLLVADKK------ESHYSRC 144
R VALK+ Y G+R+ GF G PTVE E++KAL K+ L+ D YS+C
Sbjct: 87 RLVALKLAYLGKRYGGFEYQAGVTVPTVEEELWKALVKSCLIWPDDPARVDFGPWEYSKC 146
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
GRTD+G E G + I DEI+Y RVLNR+LP DIR
Sbjct: 147 GRTDRGGEG----------EGEGEGEGEGEGDGGKPAWDPIADEINYPRVLNRLLPPDIR 196
Query: 205 VIGWSPA-PTDFSARFSCISREYKYFFWREN--------------------LNLSAMESA 243
V+ W+P P FSARFSC R+Y+YFF + L++ AM A
Sbjct: 197 VLAWAPTLPAGFSARFSCWERQYRYFFTQPAFTPLPASLDPEGKRGGKEGWLDIGAMRQA 256
Query: 244 GKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIK---------- 292
K F G HDFRNFCK+D A + N+ R V FE + G+ L +
Sbjct: 257 AKLFEGVHDFRNFCKVDGAKQITNFTRRV--FEADIVEVKDTGSALPYLDLPDFKADGSA 314
Query: 293 ------------IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNM 340
+RGSAFLWHQ+R MVAVLF+IGQGLE ++ LLD PRKP Y M
Sbjct: 315 DGTAYPKVYYFHVRGSAFLWHQIRHMVAVLFLIGQGLEKPSLVTDLLDVEKYPRKPNYTM 374
Query: 341 APEIPLVLQSCDF 353
A E+PLVL C F
Sbjct: 375 ADEVPLVLWDCIF 387
>gi|323348774|gb|EGA83014.1| Deg1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 315
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 165/287 (57%), Gaps = 45/287 (15%)
Query: 141 YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED--EIDYVRVLNRV 198
+SRCGRTDKGVS++ QVI++ +RSN + + Q + D EI YV VLN++
Sbjct: 17 FSRCGRTDKGVSAMNQVISLEVRSN----------LTDEEQRDPTNDSREIPYVHVLNQL 66
Query: 199 LPKDIRV--IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNF 256
LP DIR+ + P P +F ARFSC+ R YKY F +NLN+ M A FVGE DFRNF
Sbjct: 67 LPDDIRISAVCLRPPP-NFDARFSCVHRHYKYIFNGKNLNIEKMSKAASYFVGERDFRNF 125
Query: 257 CKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK+D + + N+KR + S +I P +F L GSAFLWHQVRCM+A+LF++GQ
Sbjct: 126 CKLDGSKQITNFKRTIISSKILPLSETFYCFDLI-----GSAFLWHQVRCMMAILFLVGQ 180
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSC-------------DFDGLKFTCSL 362
LE +++ L D P++P Y MA +IPL+L C D+ +KFT +
Sbjct: 181 SLEVPEIVLRLTDIEKTPQRPVYEMANDIPLLLYDCKFPEMDWQEPTVDDYKAIKFTTAT 240
Query: 363 DAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSLIHL 409
+A L LH Y+L+AA+ + + LP AN ++I+L
Sbjct: 241 EA---LTLH-------YELKAAVCN-IFKDVLPTANTNNFSKTIINL 276
>gi|261328820|emb|CBH11798.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 458
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 168/315 (53%), Gaps = 28/315 (8%)
Query: 55 DGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNM 114
D LV ++ G GK + KE+ + + R +AL++ Y G + G
Sbjct: 19 DSAILVSVKQELMLSGNTEGKPRSKERQFD-FSSYPSRKIALRLAYHGHIYCGLVRQAET 77
Query: 115 EPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNA 174
TVE+ + ALE+ R V +SRCGRTDKGVS++G V++ T+ A
Sbjct: 78 PNTVEAYLVAALERLRF-VEPSGPKDFSRCGRTDKGVSALGNVVSF----------TSRA 126
Query: 175 SMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN 234
S T +E + +DY LN VLP IR++GWS DF ARFSC R Y+Y+F
Sbjct: 127 SSWAT--DEHQQPPLDYCEKLNNVLPPTIRIVGWSYVNADFDARFSCTGRTYRYYFCNRG 184
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHV-----TSFEISPCYISFEGNQLC 289
LNL AM A G H+FRNFCK D NV+NY+RHV E+ P +S+
Sbjct: 185 LNLEAMRKAVGYLKGVHNFRNFCKTDVVNVNNYERHVRHADIVGSEMLPDLVSY------ 238
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
+I ++FL++Q+RC + VLF++G+ LE +V++ LLD RKP Y +A PLVL
Sbjct: 239 -FEIEANSFLYNQIRCTMEVLFLVGRCLEEPEVVKQLLDCGD--RKPVYPLADATPLVLW 295
Query: 350 SCDFDGLKFTCSLDA 364
C F+G+++ S A
Sbjct: 296 ECHFEGVRWNISQRA 310
>gi|70999131|ref|XP_754287.1| pseudouridylate synthase 3 [Aspergillus fumigatus Af293]
gi|66851924|gb|EAL92249.1| pseudouridylate synthase 3 [Aspergillus fumigatus Af293]
Length = 610
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 171/354 (48%), Gaps = 92/354 (25%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G ++GN+ P T+E E++KA+ +TRL+ E+
Sbjct: 114 RFIALKFAYLGQRYNGLEHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPRE 173
Query: 140 -----------HYSRCGRTDKGVSSVGQVIAIYLRS-NIKECNTNNASMGETVQE----- 182
YS+ GRTD+GVS+ GQVI I +RS K + S E
Sbjct: 174 LKPYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAETTSDVEMTSGGHADD 233
Query: 183 --EQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF--------- 230
+ I DEI Y+ +LNRVLP DIR++ W P P F ARFSC R+YKYFF
Sbjct: 234 TWDDIADEIPYISILNRVLPDDIRILAWCPNPPPGFDARFSCRERQYKYFFTQPAFSPTP 293
Query: 231 ------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRH 270
RE L++ AM A + F G HDFRNFCK+D + + N++R
Sbjct: 294 GPLGFAMRGSGDKNASTHLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFERI 353
Query: 271 VTSFEI-----------------------SPCYISFEGNQLCA--------IKIRGSAFL 299
+ +I +P S E + + GSAFL
Sbjct: 354 IYHADIELLDPKDHPLGYVNQPGFQALQDAPARTSAESGTFTSPAAAKVYVFNLHGSAFL 413
Query: 300 WHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
WHQVR MV++LF++GQGLE ++ LLD + P KP Y MA + PLVL C F
Sbjct: 414 WHQVRHMVSILFLVGQGLEPPTIVRDLLDVSKNPCKPTYEMASDAPLVLWDCIF 467
>gi|449304607|gb|EMD00614.1| hypothetical protein BAUCODRAFT_175867 [Baudoinia compniacensis
UAMH 10762]
Length = 607
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 182/368 (49%), Gaps = 93/368 (25%)
Query: 76 KKVKEKMSGTLN--HHFKRYVALKVMYFGQRFYGF---ASDGNMEPTVESEIFKALEKTR 130
KK+++K T + + R +ALK Y G + GF A++ PTVE E+++AL KT+
Sbjct: 81 KKLRKKAHKTFDPSKYTTRLIALKFAYLGGAYNGFEHHANNTTPLPTVEEELWRALRKTK 140
Query: 131 LLVAD---KKESH-------YSRCGRTDKGVSSVGQVIAIYLRSNIK--ECNTNNASM-G 177
L+ + + E YS+CGRTD+GVS+ GQV+ + +RS+ E + S+ G
Sbjct: 141 LIFPEFGGRSEDEVCWDGCEYSKCGRTDRGVSAFGQVVGLRVRSSRPKAEATVDVGSIPG 200
Query: 178 ETVQEEQ------------------------------IEDEIDYVRVLNRVLPKDIRVIG 207
E E+ + DE+ Y+++LN VLP DIRV+
Sbjct: 201 EKAAEDDKMRDVESAGLSPITEQGAFEHANRLQDWHSVRDELPYMQLLNHVLPTDIRVLA 260
Query: 208 WSP-APTDFSARFSCISREYKYFF----------------WRENLNLSAMESAGKKFVGE 250
W P P +FSARFSC R Y+YFF W L++ AM A +K G
Sbjct: 261 WCPHPPPNFSARFSCKERRYRYFFTNPAYATPPGPKSGEGW---LDIEAMRKAARKLEGL 317
Query: 251 HDFRNFCKMDAA-NVHNYKRHVTSFEIS------------------------PCYISFEG 285
HDFRN CK+D + + N++R V +I P
Sbjct: 318 HDFRNLCKVDPSKQITNFERRVFHADIHAVSSPRLPDSHLALSNGDLLNGEMPPIAKLSE 377
Query: 286 NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIP 345
L ++RGSAFLWHQVR +VAVLF++GQG E +I+ LLD G PR+P Y+MA + P
Sbjct: 378 PALYYFEVRGSAFLWHQVRHLVAVLFLVGQGYEQPSLIDHLLDIEGHPRRPFYDMADDRP 437
Query: 346 LVLQSCDF 353
LVL C F
Sbjct: 438 LVLWDCIF 445
>gi|226468594|emb|CAX69974.1| putative tRNA pseudouridine synthase 3 [Schistosoma japonicum]
Length = 388
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/349 (35%), Positives = 192/349 (55%), Gaps = 17/349 (4%)
Query: 54 EDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHF------KRYVALKVMYFGQRFYG 107
E +LV++N++ E+ K + EK N HF KR++ALK+ Y G ++ G
Sbjct: 28 EKAISLVKQNQRLEN---LVLKLRNPEKNISKTNRHFIFDKYKKRHIALKLSYLGWQYCG 84
Query: 108 FASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIK 167
G TV + ALEK +L + ++ E +S CGRTDKGVS + QV++ RS +
Sbjct: 85 LVPQGCYTLTVMDRLLDALEKAKL-IENRSECSFSVCGRTDKGVSGICQVVSFVSRSVVA 143
Query: 168 ECNTNNASMGETVQEEQ--IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISRE 225
E G + E Q + E+D+V +LNR LP+DIRV+ WSP +F+ARF C R
Sbjct: 144 EGVGVIEDSGCRISERQEVPDKEMDFVSILNRNLPRDIRVLAWSPVSPEFNARFDCRRRS 203
Query: 226 YKYFFWRENLNLSAMESAGKKFVGEHDFRNFC--KMDAANVHNYKRHVTSFEISPCYISF 283
Y+Y+F L++ +M AG + VG HDFRNFC +++ V ++ R + I+ S
Sbjct: 204 YEYYFPESGLDIESMIDAGNRLVGVHDFRNFCASRIEKDTV-SFVREIFEVVINVVDSSD 262
Query: 284 EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPE 343
+L + + S FL+HQ+R + ++LFM+G+G ES VI+ +LD P KPQY +A +
Sbjct: 263 HHTKLYCLCVSASGFLYHQIRYIASILFMVGRGYESPSVIDDMLDLTKTPAKPQYQLAAD 322
Query: 344 IPLVLQSCDF--DGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL 390
PL+ + + D L + S A DL H + + Y++++AI L
Sbjct: 323 YPLLFITGSYPEDCLNWETSEAAQLDLVKHYQRQWSEYRIRSAIVKRIL 371
>gi|72390247|ref|XP_845418.1| pseudouridine synthase A-like protein [Trypanosoma brucei TREU927]
gi|62360588|gb|AAX81000.1| pseudouridine synthase A-like protein, putative [Trypanosoma
brucei]
gi|70801953|gb|AAZ11859.1| pseudouridine synthase A-like protein, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 428
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/300 (38%), Positives = 164/300 (54%), Gaps = 28/300 (9%)
Query: 70 GCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKT 129
G GK + KE+ + + R +AL++ Y G + G TVE+ + ALE+
Sbjct: 4 GNTEGKPRSKERQF-DFSSYPSRKIALRLAYHGHIYCGLVRQAETPNTVEAYLVAALERL 62
Query: 130 RLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEI 189
R V +SRCGRTDKGVS++G V++ T+ AS T +EQ + +
Sbjct: 63 RF-VEPSGPKDFSRCGRTDKGVSALGNVVSF----------TSRASSWAT--DEQQQPPL 109
Query: 190 DYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVG 249
DY LN VLP IR++GWS DF ARFSC R Y+Y+F LNL AM A G
Sbjct: 110 DYCEKLNNVLPPTIRIVGWSYVNADFDARFSCTGRTYRYYFCNRGLNLEAMRKAVGYLKG 169
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEIS-----PCYISFEGNQLCAIKIRGSAFLWHQVR 304
H+FRNFCK D NV+NY+RHV +I P +S+ +I ++FL++Q+R
Sbjct: 170 VHNFRNFCKTDVVNVNNYERHVRHADIVGSDMLPDLVSY-------FEIEANSFLYNQIR 222
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
C + VLF++G+ LE +V++ LLD RKP Y +A PLVL C F+G+++ S A
Sbjct: 223 CTMEVLFLVGRCLEEPEVVKQLLDCGD--RKPVYPLADATPLVLWECHFEGVRWNISQRA 280
>gi|392587350|gb|EIW76684.1| pseudouridine synthase, partial [Coniophora puteana RWD-64-598 SS2]
Length = 493
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 188/387 (48%), Gaps = 70/387 (18%)
Query: 86 LNHHFKRYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLLVADK--KESHY 141
++H R +ALK Y G + G F D PTVE +FKAL KT+L+ D + +
Sbjct: 51 FSNHPTRKIALKFCYSGWEYNGLEFQKDATRLPTVEDVLFKALAKTKLIDEDGGFEACGW 110
Query: 142 SRCGRTDKGVSSVGQVIAIYLRSNIKE-------------CNTNNASMGETVQEEQIED- 187
+CGRTD GVS+ GQV+++++RS +E + N + E+ ED
Sbjct: 111 EKCGRTDIGVSAAGQVVSLWIRSAFEENRGARIPQSPPEDSSDNPNDISAVSAEDATEDV 170
Query: 188 ------------------EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYF 229
+ YV +LNRVLP +RV+ WSP FSARF+C R YKYF
Sbjct: 171 PPDFTSLTVRRRPTNELRGLRYVTMLNRVLPPTVRVLAWSPVEPTFSARFNCRHRHYKYF 230
Query: 230 FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQL 288
F L++S M+ A VGEHDFRN CK+D + + N+KR + +I + E + +
Sbjct: 231 FPSRELDISLMQQAADYLVGEHDFRNMCKLDPSKQITNFKRRILKAQIE--AVGQENSNM 288
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG-------------IPRK 335
+ GSAFL+HQVR ++A+LF++G GLE V+ SL++T+ + K
Sbjct: 289 YVFNLVGSAFLYHQVRHIMAILFLVGTGLEPPSVVLSLINTDADAAQELGLSADMLVDCK 348
Query: 336 PQYNMAPEIPLVLQSCDFDGLKFTCSLD-------AGHDLRLHLRNECQVYQLQAAI--- 385
P Y MA +PL+L C + +D AG DL +++ Q+ AA+
Sbjct: 349 PVYQMAEALPLMLWDCVYSDTDVDWHIDFEDKPAGAGADLHSQMQSVYDRSQIHAALDGH 408
Query: 386 -------FHEALLNCLPLA-NGLEIGS 404
+H C P + GL S
Sbjct: 409 FLASATRYHRPAPICFPFSQTGLSPAS 435
>gi|300175988|emb|CBK22205.2| unnamed protein product [Blastocystis hominis]
Length = 399
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 156/289 (53%), Gaps = 45/289 (15%)
Query: 102 GQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIY 161
Q+ G A D +VES IF AL++ L + D + HY RCGRTD GVS+ QVI++Y
Sbjct: 10 AQQIDGVADDN----SVESAIFSALKRVHL-IDDISKCHYQRCGRTDAGVSAFNQVISLY 64
Query: 162 LRSNIKE----------------CNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
LRSN++ NT+N + E DY VLN+VLP IR+
Sbjct: 65 LRSNLRSGVEFVDEFDPSIPYNAPNTSNQPQSAPSSSTPVT-EFDYASVLNKVLPPTIRI 123
Query: 206 IGWSPAPTDFSARFSC----------ISREYKYFFWRENLNLSAMESAGKKFVGEHDFRN 255
GW P FSAR+SC R Y+Y+F R N ++ M SA K F GEHDFRN
Sbjct: 124 TGWCPVDRSFSARYSCCGEDWAANLSAGRVYRYYFLRRNYDVELMRSAVKLFEGEHDFRN 183
Query: 256 FCKMDAANVHNYKRHVTSFEI-------SPCYISFEGNQLCAIKIRGSAFLWHQVRCMVA 308
FC++DA NV ++ R V ++ +P + + A++I G AFLWHQ+RCM++
Sbjct: 184 FCRIDAVNVCDFTRTVFRGDVVEIRKGETP------QHDVLAVEIVGRAFLWHQIRCMMS 237
Query: 309 VLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLK 357
+LF++ E +I LLD + P KPQY++A PLVL C F+ K
Sbjct: 238 ILFLVASKKEKQTIISDLLDVSKSPCKPQYHLADPEPLVLYDCVFNPGK 286
>gi|116199417|ref|XP_001225520.1| hypothetical protein CHGG_07864 [Chaetomium globosum CBS 148.51]
gi|88179143|gb|EAQ86611.1| hypothetical protein CHGG_07864 [Chaetomium globosum CBS 148.51]
Length = 553
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 162/310 (52%), Gaps = 60/310 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKES------HYSRC 144
R +ALK+ Y G+R+ GF + TVE E+++AL K+ L+ D YS+C
Sbjct: 108 RLIALKLAYLGKRYGGFEYQAGVSVSTVEEELWRALAKSCLIWPDDPSRVDFAPWEYSKC 167
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
GRTDKG ++ G+ + + DEI+Y R+LNR+LP DIR
Sbjct: 168 GRTDKGAGV-----------EVERGRGRGEEDGKRAWD-PVADEINYPRILNRLLPPDIR 215
Query: 205 VIGWSPA-PTDFSARFSCISREYKYFFWREN-------------------LNLSAMESAG 244
V+ W+P P DFSARFSC R+Y+YFF + L++ AM A
Sbjct: 216 VLAWAPTLPEDFSARFSCRERQYRYFFTQPAFAPLPISVDPERKKGSEGWLDIDAMRKAA 275
Query: 245 KKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI--------SPCYISFEG---------- 285
K F G HDFRNFCK+D + N+KR + ++ + Y++ +G
Sbjct: 276 KLFEGVHDFRNFCKVDGVKQISNFKRRMFEADVVEVEDAGSALPYLAQQGFKPESLVGGT 335
Query: 286 --NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPE 343
++ +RGSAFLWHQ+R MVA+LF++GQGLE ++ LLD PRKP Y MA E
Sbjct: 336 TYPKVYYFHVRGSAFLWHQIRHMVAILFLVGQGLEKPSIVTDLLDVEKNPRKPNYAMAEE 395
Query: 344 IPLVLQSCDF 353
+PLVL C F
Sbjct: 396 VPLVLWDCIF 405
>gi|157872401|ref|XP_001684749.1| putative pseudouridine synthase A-like protein [Leishmania major
strain Friedlin]
gi|68127819|emb|CAJ06260.1| putative pseudouridine synthase A-like protein [Leishmania major
strain Friedlin]
Length = 498
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 172/299 (57%), Gaps = 17/299 (5%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD 135
K+ + + + + + R +AL++ Y G G A + TVE + AL + RL+ D
Sbjct: 44 KQQRTERAFLFDRYPSRKIALRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRLRLIPED 103
Query: 136 KKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVL 195
++ RCGRTDKGVS++G ++ R++ T +A E Q+ +DY +L
Sbjct: 104 GPH-NFGRCGRTDKGVSALGNAFSLTARASC----TGDA-------EPQLP-PLDYCSML 150
Query: 196 NRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRN 255
N VLP IR++G + F ARFSC+ R Y+Y+F+ LNL+AM+ A F+G H+FRN
Sbjct: 151 NNVLPSTIRIVGCALVDDAFDARFSCVHRTYRYYFFHRGLNLAAMQEAAAFFLGTHNFRN 210
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FCKMD NV N+ R V S + P E + ++IR ++FL+HQ+RC++ VLF++G+
Sbjct: 211 FCKMDVVNVSNFVRTVFSVGLHPSEALPE--LISYLEIRANSFLYHQIRCIMEVLFLVGR 268
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRN 374
GLE V+++LL+ RKP Y +A PL+L C FD +++ S A H + L++
Sbjct: 269 GLEVPSVVQTLLELGD--RKPTYPLADGTPLILWDCGFDNVQWQMSHCAFHAMEQELQD 325
>gi|302656723|ref|XP_003020113.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517]
gi|291183894|gb|EFE39489.1| hypothetical protein TRV_05887 [Trichophyton verrucosum HKI 0517]
Length = 614
Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 140/458 (30%), Positives = 203/458 (44%), Gaps = 128/458 (27%)
Query: 18 ALQNRVKELE------ADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGC 71
+L NR+ ELE NA + + C+K++ + T R T
Sbjct: 17 SLINRIHELERQLNQCPQNA---ASIPSTECQKVDKGLGQPERTPTNSRPRERSTS---L 70
Query: 72 KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNME--PTVESEIFKALEK 128
+K K++ + + R++A+K Y G+R+ G ++GN PT+E E++KAL K
Sbjct: 71 NPSRKSDKKRRKIDPSKYSTRHIAIKFAYLGKRYNGLEHANGNYTEAPTIEEELWKALRK 130
Query: 129 TRLLVADKKES----------------------HYSRCGRTDKGVSSVGQVIAIYLR--- 163
T L+ K+ YS+CGRTDKGVS+ GQVI I +R
Sbjct: 131 THLIFPTHKDCTEEFSGKDNSPSRPYAIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLR 190
Query: 164 -----------------------SNIKECNTNN--ASMGETVQEEQIEDEIDYVRVLNRV 198
S + + NT + + GE + I DE+ Y+++LN
Sbjct: 191 PADPNPPADLEEGDVMDSDVATESGMGDRNTQSGVSDTGEAKGWDDIADELPYIQILNGA 250
Query: 199 LPKDIRVIGWSP-APTDFSARFSCISREYKYFF--------------------------- 230
LP+DIRV+ W P P DF ARFSC R Y+YFF
Sbjct: 251 LPEDIRVLAWCPHLPPDFDARFSCRQRRYRYFFTQPAFCPTPGARGIVRSSELKDDLSLA 310
Query: 231 -WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEIS---------- 277
RE L++ AM A + FVG HDFRNFCK+D + + N+ R + +I
Sbjct: 311 RLREGWLDIEAMREAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLG 370
Query: 278 ----PCYISFE------------------GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
P + FE ++ + + G+AFLWHQ+R MV +LF++GQ
Sbjct: 371 FVQMPGFEPFENGPRNTGVPESIDDINPAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQ 430
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
GLE ++ LLD PR+P Y MA + PLVL C F
Sbjct: 431 GLEHPSIVPELLDVTKNPRRPVYEMASDSPLVLWDCIF 468
>gi|440636881|gb|ELR06800.1| hypothetical protein GMDG_02238 [Geomyces destructans 20631-21]
Length = 628
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 131/389 (33%), Positives = 184/389 (47%), Gaps = 111/389 (28%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNME---PTVESEIFKALEKTRLL 132
KKV+ + + + + R +ALK+ Y G+ + GF N + PTVE +I++AL K RL+
Sbjct: 97 KKVRTEKAFDPSRYSTRLIALKLAYLGKGYNGFEHHLNNKTRLPTVEEKIWEALVKARLI 156
Query: 133 VA-----DKKES---------HYSRCGRTDKGVSSVGQVIAIYLRSN------------- 165
D+ + YS+CGRTDKGVS+ GQVI + +RSN
Sbjct: 157 FPKGASLDQHDGSGEINWDGCDYSKCGRTDKGVSAFGQVIGLRVRSNRPLPKYTAEGPKY 216
Query: 166 ---------------------------------IKECNTNNASMGETVQEEQIEDEIDYV 192
E + ++ E + + I DE+ Y
Sbjct: 217 ETDGFRHTKPRDGALEMASPALRPSIEESRSQVTPELSIDDPEFEEPLNFDPIADELPYC 276
Query: 193 RVLNRVLPKDIRVIGWSPAPT-DFSARFSCISREYKYFFWR-------EN---------- 234
+LNR+LP DIR++ W PAP FSARFSC R+YKYFF + EN
Sbjct: 277 HLLNRLLPPDIRILAWCPAPPLGFSARFSCKERQYKYFFTQPAFAPPPENPNIKSTNKNT 336
Query: 235 ------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI-----SPCYIS 282
L++ AM A FVG HDFRNFCK+D + + N++R + +I + +
Sbjct: 337 DVKDGWLDIDAMREAAGYFVGSHDFRNFCKIDGSKQIENFERTMFFADILEVDDTTPTLD 396
Query: 283 FEGN------------------QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIE 324
F G ++ + GSAFLWHQVRCMVA+LF++GQGLE +I+
Sbjct: 397 FVGKKEFLPAASITGSSEQISPKVYTFTLHGSAFLWHQVRCMVAILFLVGQGLEKPTIIK 456
Query: 325 SLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
LLD P +P Y MA + PLVL C F
Sbjct: 457 ELLDVERNPSRPAYEMAQDSPLVLWDCVF 485
>gi|340054160|emb|CCC48454.1| putative pseudouridine synthase A-like protein [Trypanosoma vivax
Y486]
Length = 439
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 170/314 (54%), Gaps = 27/314 (8%)
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK 136
K K + +++ R VA+++ Y G + G TVE I AL K L+ D
Sbjct: 19 KTKSERMFNFSNYPSRKVAMRLAYHGHIYNGLVRQLETPNTVEEHIVLALRKLHLVEPDG 78
Query: 137 KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLN 196
S SRCGRTDKGVS++G +++ +R++ +EQ + +DY +LN
Sbjct: 79 P-SDLSRCGRTDKGVSALGNALSLTVRAS------------SWPWDEQQKTPLDYCNMLN 125
Query: 197 RVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNF 256
VLP IR++GW+ + F ARFSC+ R Y+Y+F LNL AM A G H+FRNF
Sbjct: 126 NVLPPTIRIVGWTYVDSSFDARFSCVGRTYRYYFCHRGLNLEAMRDAAALLKGTHNFRNF 185
Query: 257 CKMDAANVHNYKRHVTSFEIS-----PCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
CK D NV NY+RHV EI P +S+ ++I ++FL++Q+RC + +LF
Sbjct: 186 CKTDVVNVDNYERHVRRAEIVKSEMLPELVSY-------LEIEANSFLYNQIRCTMEILF 238
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLH 371
+IG+GLE +V+ +LL T G +KP Y +A PLVL C F+G+ + S A +
Sbjct: 239 LIGRGLEESNVVTALL-TRG-DKKPVYPLADATPLVLWDCHFEGINWRISSRAFTFIEKE 296
Query: 372 LRNECQVYQLQAAI 385
L++ ++A +
Sbjct: 297 LQDIATALMIRATV 310
>gi|315055729|ref|XP_003177239.1| tRNA pseudouridine synthase 3 [Arthroderma gypseum CBS 118893]
gi|311339085|gb|EFQ98287.1| tRNA pseudouridine synthase 3 [Arthroderma gypseum CBS 118893]
Length = 616
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 145/458 (31%), Positives = 205/458 (44%), Gaps = 126/458 (27%)
Query: 18 ALQNRVKELEAD-NAKLLSKLSL--CRCEKIEDKVHDGVEDGTTLVEENRKTE-SGGCKT 73
+L NR+ ELE N + +S C+ +E K G + TT +NR E S
Sbjct: 17 SLINRIHELERQLNECPQTSVSAPSTECQSLEKKR--GQTERTTA--DNRPRERSTSTNP 72
Query: 74 GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNME--PTVESEIFKALEKTR 130
+K K++ + + R++A+K Y G+R+ G ++GN PT+E E++KAL KTR
Sbjct: 73 PRKSDKKRRKIDPSRYSTRHIAIKFAYLGKRYNGLEHANGNFTEVPTIEEELWKALRKTR 132
Query: 131 LLVADKKES----------------------HYSRCGRTDKGVSSVGQVIAIYLRS---- 164
L+ K+ YS+CGRTDKGVS+ GQVI I +RS
Sbjct: 133 LIFPTHKDCTEEFSGKDSSPSRPYSIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPA 192
Query: 165 ---NIKECNTNNASMGETVQE-----------------------EQIEDEIDYVRVLNRV 198
E N +A E + I DE+ Y+++LN
Sbjct: 193 DSSPPTEANGGDAMDSAVAVELGTGDENRRSGVPGTGEAKAAVWDDIADELPYIQILNGA 252
Query: 199 LPKDIRVIGWSP-APTDFSARFSCISREYKYFFW-------------------------- 231
LP+DIRV+ W P P DF ARFSC R Y+YFF
Sbjct: 253 LPEDIRVLAWCPHLPADFDARFSCRQRRYRYFFTQPAFCPTPGARGIVRAPELKDDPSSP 312
Query: 232 --REN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHV---------------- 271
RE L++ AM A + FVG HDFRNFCK+D + + N+ R +
Sbjct: 313 RPREGWLDIEAMREAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRADLELVDPQRTPLG 372
Query: 272 ----------------TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
T P I+ +++ + + G+AFLWHQ+R MV +LF++GQ
Sbjct: 373 FVQMPGFERLENSPRNTGIPEGPNDINPAASKVYSFTVHGTAFLWHQIRHMVGILFLVGQ 432
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
GLE ++ LLD PR+P Y MA + PLVL C F
Sbjct: 433 GLEHPSIVPELLDVTKNPRRPVYEMASDSPLVLWDCIF 470
>gi|412990717|emb|CCO18089.1| predicted protein [Bathycoccus prasinos]
Length = 473
Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 177/349 (50%), Gaps = 53/349 (15%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEP---------------TVESEIFKALEKTRLLVADK 136
R +AL++ Y G +GF+S G ++ T+E +F+AL+K RL+ K
Sbjct: 43 RKIALELAYCGANHFGFSSQGCLQASNAETTNAKNNSHIRTIEGALFEALKKCRLVDPSK 102
Query: 137 K-----ESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDY 191
+ YSRCGRTD+GVSS+G V+++ +R E ++ + +EIDY
Sbjct: 103 EIFGEPSVDYSRCGRTDRGVSSIGNVVSLNVRCK-GVGGGGGGEDEEDDEDGENGEEIDY 161
Query: 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR------------------- 232
V LNR LP D+R + W P FS+RF+C SR Y+Y F R
Sbjct: 162 VGNLNRALPDDVRALCWYAVPDGFSSRFNCTSRRYEYHFTRVVRQNLAPPPRGGEEAGKC 221
Query: 233 ---ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLC 289
E L++ M A +K VG HDFRNFCKM+ + +Y RH+ I L
Sbjct: 222 EPEEILDVGRMREACEKLVGTHDFRNFCKMNVKDCRDYTRHIKECRIEKKNTERTTGALL 281
Query: 290 -----AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEI 344
+ I GS+FLWH VRC+ AVLF +G ++ D+I+ LLD PRKP Y MAPE
Sbjct: 282 RETDWVLIIEGSSFLWHMVRCIAAVLFQVGLRADAPDIIDDLLDLTKTPRKPLYAMAPEH 341
Query: 345 PLVLQSCDFDGL-----KFTCSLDAGHDLRLHLRNECQVYQLQAAIFHE 388
LVL C++D K S +A L +H ++++L+A+++ E
Sbjct: 342 SLVLVGCEYDDSVINPGKRRVSEEARQGLEMHALAAARMHRLKASLWEE 390
>gi|340515588|gb|EGR45841.1| hypothetical protein TRIREDRAFT_80941 [Trichoderma reesei QM6a]
Length = 604
Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 131/382 (34%), Positives = 182/382 (47%), Gaps = 121/382 (31%)
Query: 92 RYVALKVMYFGQRFYGF--ASDGNMEPTVESEIFKALEKTRLL------VADKKESHYSR 143
RY+ALK+ Y G+ F GF + GN +P++E E++ AL K L+ + D + YS+
Sbjct: 71 RYIALKLAYLGKNFGGFEFQAMGN-QPSIEEELWNALTKACLIFPEDERIVDFECCEYSK 129
Query: 144 CGRTDKGVSSVGQVIAIYLRSN----------IKECNTN------NASMGETVQEEQ--- 184
CGRTD+GVS+ GQVI + +RSN +E + +AS + Q +Q
Sbjct: 130 CGRTDRGVSAFGQVIGLRVRSNRPLPKKPVEGAEEMDVEQTGPLASASAEQETQPQQDKD 189
Query: 185 -------------------------IEDEIDYVRVLNRVLPKDIRVIGWSPAPTD-FSAR 218
I DEI Y VLNR+LPK+IR++ W P+P FSAR
Sbjct: 190 DDNKAKAKAKAKAKKQPEPTRPFDDIRDEIPYPHVLNRLLPKEIRILAWCPSPPPGFSAR 249
Query: 219 FSCISREYKYFFWREN--------------------------------LNLSAMESAGKK 246
FSC R+Y+YFF + L++ AM A K+
Sbjct: 250 FSCRERQYRYFFTQPAFAPAPSHVDNTAAAAAATGQGGANGKAVKSGWLDIDAMRDAAKR 309
Query: 247 FVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI--------SPCYISFEG------------ 285
+ GEHDFRN CK+D A + N+KR + +I + Y+ G
Sbjct: 310 YEGEHDFRNLCKIDPAKQITNFKRRMFESDIVEVEDAASALPYLQAAGFAPENLEALDSS 369
Query: 286 --------------NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
++ +RGSAFLWHQ+R MVAVLF++GQGLE V+ LLD +
Sbjct: 370 SSSSSASGARKGMYPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGLEKPSVVSELLDVDK 429
Query: 332 IPRKPQYNMAPEIPLVLQSCDF 353
PR+P Y MA E+PLVL C F
Sbjct: 430 NPRRPNYVMADEVPLVLWDCIF 451
>gi|119490947|ref|XP_001263134.1| pseudouridylate synthase 3 [Neosartorya fischeri NRRL 181]
gi|119411294|gb|EAW21237.1| pseudouridylate synthase 3 [Neosartorya fischeri NRRL 181]
Length = 610
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 124/354 (35%), Positives = 171/354 (48%), Gaps = 92/354 (25%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G ++GN+ P T+E E++KA+ +TRL+ E+
Sbjct: 114 RFIALKFAYLGQRYNGLEHANGNVTPLPTIEEELWKAMRRTRLIFPKNAEAFDDSRGPRE 173
Query: 140 -----------HYSRCGRTDKGVSSVGQVIAIYLRS-NIKECNTNNASMGETVQE----- 182
YS+ GRTD+GVS+ GQVI I +RS K + S E
Sbjct: 174 LKPYAISWEGCDYSKAGRTDRGVSAFGQVIGIRVRSARPKRPDAEATSDVEMTSGAHADD 233
Query: 183 --EQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF--------- 230
+ I DEI Y+ +LNRVLP DIR++ W P P F ARFSC R+YKYFF
Sbjct: 234 TWDDIADEIPYISMLNRVLPDDIRILAWCPNPPPGFDARFSCRERQYKYFFTQPAFSPTP 293
Query: 231 ------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKR- 269
RE L++ AM A + F G HDFRNFCK+D + + N++R
Sbjct: 294 GPLGFAMRGSGDKNASAQLREGWLDIDAMREAARYFEGVHDFRNFCKLDTSKQIENFERI 353
Query: 270 -------------HVTSFEISPCYISFE-----------------GNQLCAIKIRGSAFL 299
H + P + + + ++ + GSAFL
Sbjct: 354 IYHAGIELLDPKNHPLGYVNQPGFQALQDAPAGTDAESGTITNSAAAKVYVFNLHGSAFL 413
Query: 300 WHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
WHQVR MV++LF++GQGLE ++ LLD + P KP Y MA + PLVL C F
Sbjct: 414 WHQVRHMVSILFLVGQGLEPPTIVRDLLDVSKNPCKPTYEMASDAPLVLWDCIF 467
>gi|167537271|ref|XP_001750305.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771295|gb|EDQ84964.1| predicted protein [Monosiga brevicollis MX1]
Length = 1025
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 161/307 (52%), Gaps = 55/307 (17%)
Query: 58 TLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPT 117
+L + ++ES G +K + H +R VAL+ Y G+ + G A + T
Sbjct: 4 SLQRQLHQSESKKNSAGSRKAFQ-----FQQHNQRKVALRFAYLGEHYRGLAFQDHQADT 58
Query: 118 VESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASM- 176
VE +F AL++ L+ D+ +SRCGRTDKGVS++ QV ++Y+R+N++EC +
Sbjct: 59 VEEHLFNALQRA-CLIDDRTSCEFSRCGRTDKGVSALSQVASLYVRTNLEECTSLKPRTE 117
Query: 177 -----GETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFW 231
Q E+ EIDY+ VLNR+LP DIRV W+P P DF AR SC + + F
Sbjct: 118 PLPPKKAEAQREKARQEIDYIHVLNRLLPHDIRVYAWAPVPADFDAR-SC---KKAHNFL 173
Query: 232 RENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAI 291
R N+ + RN +P Y LC I
Sbjct: 174 RGNMTSATFA------------RN---------------------TPYY------NLCCI 194
Query: 292 KIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSC 351
+ GSAFLWHQ+RCMV+VLF+IGQ LES ++ LLD +P KPQY+MAP++PLVL C
Sbjct: 195 TVHGSAFLWHQIRCMVSVLFLIGQQLESPSIVSRLLDVVSLPGKPQYDMAPDLPLVLWDC 254
Query: 352 DFDGLKF 358
++ + +
Sbjct: 255 EYTDVPW 261
>gi|148693448|gb|EDL25395.1| pseudouridine synthase 3, isoform CRA_a [Mus musculus]
Length = 361
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/217 (45%), Positives = 139/217 (64%), Gaps = 12/217 (5%)
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEIDYVRVLNRVLPKDIRVIGW 208
+S++ QVI++ LRS T+ S ++ E + EI Y +LNRVLP DIRV+ W
Sbjct: 2 LSTIPQVISLDLRSQFP---TSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAW 58
Query: 209 SPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNY 267
+P FSARFSC+ R Y+YFF R +L+++ M A +K+VG HDFRN CKMD AN V N+
Sbjct: 59 APVEPSFSARFSCLERTYRYFFPRADLDIATMNYAAQKYVGTHDFRNLCKMDVANGVINF 118
Query: 268 KRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESID 321
+R + ++ S E QLC ++ G AFL+HQVRCM+A+LF+IGQG+E +
Sbjct: 119 QRTILCAQVQLVAQSPGEERRQEPFQLCQFEVIGQAFLYHQVRCMMAILFLIGQGMEKPE 178
Query: 322 VIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+I+ LL+ P+KPQY+MA E PLVL C F+ K+
Sbjct: 179 IIDELLNIQKNPQKPQYSMAVEFPLVLYDCKFENTKW 215
>gi|154341677|ref|XP_001566790.1| putative pseudouridine synthase A-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134064115|emb|CAM40310.1| putative pseudouridine synthase A-like protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 499
Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 164/292 (56%), Gaps = 19/292 (6%)
Query: 74 GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV 133
G KK K + + + N + R + L++ Y G G A + TVE + AL + RL+
Sbjct: 42 GTKKEKTEKAFSFNRYPSRKIGLRLAYHGHVHDGLAKQKETDNTVEGLVCDALRRVRLIP 101
Query: 134 ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR 193
D ++ RCGRTDKGVS++G ++ R++ T + +DY
Sbjct: 102 EDGPH-NFGRCGRTDKGVSALGNAFSLTARASC------------TADADPQLPPLDYCS 148
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
+LN VLP IR++G + F ARFSC+ R Y+Y+F LNL+AM+ A F+G H+F
Sbjct: 149 MLNNVLPSTIRIVGCALVDDRFDARFSCVHRTYRYYFCHRGLNLAAMQEAAAFFLGTHNF 208
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCA-IKIRGSAFLWHQVRCMVAVLFM 312
RNFC+MD NV N+ R V S + P S E +L + ++I ++FL+HQ+RC + VLF+
Sbjct: 209 RNFCQMDVVNVSNFTRTVLSVGLHP---SEELPELISYLEITANSFLYHQIRCTMEVLFL 265
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
+G+GLE+ V++++L+ KP Y +A PL+L C FD +++ S A
Sbjct: 266 VGRGLEAPSVVQTMLELGDC--KPTYPLADGTPLILWDCAFDNVQWQLSHSA 315
>gi|321261750|ref|XP_003195594.1| pseudouridylate synthase [Cryptococcus gattii WM276]
gi|317462068|gb|ADV23807.1| pseudouridylate synthase, putative [Cryptococcus gattii WM276]
Length = 511
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/323 (35%), Positives = 157/323 (48%), Gaps = 44/323 (13%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA------SDGNMEPTVESEIFKALEK 128
K K K + + H R++AL + Y G + G A DG PTVE+E+ ALEK
Sbjct: 56 KSKKKAEKAFHFPAHPTRHIALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALEK 115
Query: 129 TRLLVADKKESH--YSRCGRTDKGVSSVGQVIAIYLRSNIKE------------------ 168
TRL+ K + RCGRTD+GVS GQVI +++RS+ +
Sbjct: 116 TRLIAEGKGWEGCGFGRCGRTDRGVSGEGQVINLWVRSSRRRDDGGGELGDGWRDAAEPE 175
Query: 169 ------CNTNNASMGE-----TVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
+ + G+ VQ + E Y ++LN VLP IRV+ WSP P+ F +
Sbjct: 176 VEKPVVVQEDGEAKGQEKKSKIVQPTRQPSEFPYPKLLNSVLPPSIRVLAWSPIPSSFDS 235
Query: 218 RFSCISREYKYFF------WRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRH 270
RFSC R Y+Y F L+L M + +GEHD+RNFCK+D + + N+ R
Sbjct: 236 RFSCTYRHYRYAFHTRPTPTSPELDLELMSQGAQLLLGEHDYRNFCKLDGSKQIENHTRG 295
Query: 271 VTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
V G + + G+AFLWHQVR +VAVLF+IG LE ++ LLD
Sbjct: 296 VLKAWFEGGESQGVGEGMMVFNLIGTAFLWHQVRHIVAVLFLIGAKLEPPSIVSDLLDVE 355
Query: 331 GIPRKPQYNMAPEIPLVLQSCDF 353
P KP Y M +PL L C +
Sbjct: 356 RFPSKPNYTMGHPLPLTLHHCGY 378
>gi|170097145|ref|XP_001879792.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645195|gb|EDR09443.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 446
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 158/288 (54%), Gaps = 37/288 (12%)
Query: 85 TLNHHFKRYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLL--VADKKESH 140
+ + H +R +ALK Y G + G F PTVE +F AL K RL+ A +
Sbjct: 43 SFSSHPRRKIALKFSYSGWEYGGLAFQLGPTPLPTVEGVLFDALAKARLIDQEAGFEGCG 102
Query: 141 YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLP 200
+ +CGRTD+GVS+ GQV++++ T+ + E DY+ +LNR+LP
Sbjct: 103 WEKCGRTDRGVSAAGQVVSLW-------ATTSKPTF-----------EHDYLSILNRLLP 144
Query: 201 KDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMD 260
IRV+ WSP FSARFSC+ R YKYFF L++ M+ A + VG+HDFRN CK+D
Sbjct: 145 DTIRVLAWSPVAPKFSARFSCLYRHYKYFFSPLGLDIPRMQQAALRLVGDHDFRNLCKLD 204
Query: 261 A-ANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ ++R V + EI P ++ G + + G+AFL+HQVR ++A+LF++G GLE
Sbjct: 205 PQKQITIFRRKVITAEIEPLSLAENGEGVYVFNLVGTAFLYHQVRHIMAILFLVGTGLEP 264
Query: 320 IDVIESLLDTNG--------------IPRKPQYNMAPEIPLVLQSCDF 353
V+ SLL+ + RKP+Y MA +PL+L C +
Sbjct: 265 PSVVSSLLNVEAGVEPTKDGDSPYEVVDRKPEYQMADALPLMLWECGY 312
>gi|134114618|ref|XP_774017.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256647|gb|EAL19370.1| hypothetical protein CNBH0640 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 514
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 170/369 (46%), Gaps = 57/369 (15%)
Query: 32 KLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFK 91
+L+ KL C + TT ++ RK+ KKK ++ H
Sbjct: 23 QLIQKLEALECPSLVPSQEPLPPQTTTATKQERKS--------KKKAEKPFH--FPAHPT 72
Query: 92 RYVALKVMYFGQRFYGFA------SDGNMEPTVESEIFKALEKTRLLVADK--KESHYSR 143
R++AL + Y G + G A DG PTVE+E+ ALEKTRL+ K + + R
Sbjct: 73 RHIALLISYHGWPYSGLALQAPATPDGPPVPTVEAELLAALEKTRLIAEGKGWEGCGFGR 132
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIK--------------------------------ECNT 171
CGRTD+GVS GQV+ +++RS+ K E
Sbjct: 133 CGRTDRGVSGEGQVVNLWVRSSRKRGDGGGELGDGWRDAVEPEVEKMEKTVIVQEDEEKG 192
Query: 172 NNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF- 230
+ +Q + E Y ++LN VLP IR++ WSP P F +RFSC R Y+Y F
Sbjct: 193 VKEKKSKVIQPPRQPSEFPYPKLLNSVLPPSIRILAWSPIPASFDSRFSCTYRHYRYAFH 252
Query: 231 -----WRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFE 284
L+L M + +GEHD+RNFCK+D + + N+ R V
Sbjct: 253 TRPTPTSPELDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTRGVLKAWFEGGESQGV 312
Query: 285 GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEI 344
G+ + + G+AFLWHQVR ++AVLF++G LE ++ LLD P KP Y M +
Sbjct: 313 GDGMMVFNLIGTAFLWHQVRHIIAVLFLVGAKLEPPSIVSDLLDVKRFPSKPNYTMGHPL 372
Query: 345 PLVLQSCDF 353
PL L C +
Sbjct: 373 PLTLHHCGY 381
>gi|405122442|gb|AFR97209.1| pseudouridylate synthase [Cryptococcus neoformans var. grubii H99]
Length = 499
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 118/366 (32%), Positives = 173/366 (47%), Gaps = 55/366 (15%)
Query: 32 KLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFK 91
+L+ KL C + H+ + TT ++ RK+ KKK ++ H
Sbjct: 11 QLIQKLEALECTSLVPS-HEPLPLQTTATKQERKS--------KKKAEKPFH--FPAHPT 59
Query: 92 RYVALKVMYFGQRFYGFA------SDGNMEPTVESEIFKALEKTRLLVADK--KESHYSR 143
R++AL + Y G + G A DG PTVE+E+ ALEKTRL+ K + + R
Sbjct: 60 RHIALLISYHGWPYSGLALQAPATPDGPPIPTVEAELLAALEKTRLIAEGKGWEGCGFGR 119
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIK-----------------------------ECNTNNA 174
CGRTD+GVS GQV+ +++RS+ K E
Sbjct: 120 CGRTDRGVSGEGQVVNLWVRSSRKRGDGGGELGDGWRDAAEPEVEKTVIVQEDEGQGGKE 179
Query: 175 SMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF---- 230
+ V+ + E Y ++LN VLP IR++ WSP P+ F +RFSC R Y+Y F
Sbjct: 180 EKSKIVRPPRQPSEFPYPKLLNSVLPPSIRILAWSPIPSSFDSRFSCTYRHYRYAFHTRP 239
Query: 231 --WRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQ 287
++L M + +GEHD+RNFCK+D + + N+ R V G
Sbjct: 240 TPTSPEVDLELMRQGAQLLLGEHDYRNFCKLDGSKQIENHTRGVLKAWFEGGESQGVGEG 299
Query: 288 LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLV 347
+ + G+AFLWHQVR ++AVLF++G LE ++ LLD P KP Y M +PL
Sbjct: 300 MMVFNLIGTAFLWHQVRHIIAVLFLVGAKLEPPSIVSDLLDVERFPSKPNYTMGHPLPLT 359
Query: 348 LQSCDF 353
L C +
Sbjct: 360 LHHCGY 365
>gi|346975263|gb|EGY18715.1| tRNA pseudouridine synthase [Verticillium dahliae VdLs.17]
Length = 580
Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 127/372 (34%), Positives = 179/372 (48%), Gaps = 102/372 (27%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNMEPTVESEIFKALEKTRLLV 133
KK+ K + + + RYVAL++ Y G+ + GF ++ T+ESE++ AL K L+
Sbjct: 62 KKRKKGAANIDPSRYSYRYVALRLAYLGKNYNGFEHQQSAVQATIESELWSALTKACLIF 121
Query: 134 A----------DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASM------- 176
+ KE YS+CGRTDKGVS+ GQVI + LRS+ K A +
Sbjct: 122 PPGEDIDQIDFNYKELDYSKCGRTDKGVSAFGQVIGLRLRSS-KPLPKTAAQLEEEARKK 180
Query: 177 GETVQEEQ------------------------------------IEDEIDYVRVLNRVLP 200
E +QE+Q I+DE+ Y + LNR+LP
Sbjct: 181 AEALQEKQKQQQHDGQGDVSMQDAAVEQQQQPSSPPPAPKPWDPIKDELPYCKTLNRLLP 240
Query: 201 KDIRVIGWSPA-PTDFSARFSCISREYKYFFWREN------------------------- 234
DIR++ W P+ P FSARFSC R+Y+Y+F +
Sbjct: 241 PDIRILAWCPSTPEGFSARFSCTERQYRYYFTQPAFAPAPEGLTPPKGPSQPRKKKDAAP 300
Query: 235 ----------LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFE---ISPCYI 281
L++ AM +A KKF G HDFRNFCK + A ++P
Sbjct: 301 PPPPRPKVGYLDIDAMRNAAKKFEGLHDFRNFCKPETAAAAAAHGGGRGGSGGGVTP--- 357
Query: 282 SFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMA 341
++ + +RGSAFLWHQ+R MV+VLF++GQGLE +V++ LLD PRKP Y +A
Sbjct: 358 -----KVYYLHVRGSAFLWHQIRHMVSVLFLVGQGLERPEVVDELLDVERHPRKPNYGLA 412
Query: 342 PEIPLVLQSCDF 353
E+PLVL C F
Sbjct: 413 HEVPLVLWDCIF 424
>gi|189236260|ref|XP_974416.2| PREDICTED: similar to pseudouridylate synthase [Tribolium
castaneum]
Length = 275
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/244 (41%), Positives = 147/244 (60%), Gaps = 25/244 (10%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R+V LK +Y G + G+ + + T+E +F AL KT L+ ++ ++Y RCGRTDKGV
Sbjct: 56 RHVLLKFLYLGWDYQGYVTQEDTVNTIEHHVFNALIKT-CLIENRSSANYHRCGRTDKGV 114
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
I++ LRSN + E EI+Y ++LNRVLP++I+ + W P
Sbjct: 115 ------ISLDLRSN----------------GDDFESEINYCKILNRVLPENIQFVAWCPV 152
Query: 212 PTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRH 270
+ FSARF C +R YKYFF + NL++ AM+ A VG HDFRNFCKMD N V +KR+
Sbjct: 153 ESAFSARFDCKNRTYKYFFPKSNLDIDAMKIAANYLVGTHDFRNFCKMDVNNGVVEFKRN 212
Query: 271 VTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
+ S +IS + E + + I+G+AFLWHQ+RC+V +L ++GQG E +V+ LLD
Sbjct: 213 ILSVDIS-LFQEDERYSIQVLTIKGNAFLWHQIRCIVGILILVGQGKEKPEVVLDLLDIT 271
Query: 331 GIPR 334
PR
Sbjct: 272 RNPR 275
>gi|212526856|ref|XP_002143585.1| pseudouridylate synthase 3 [Talaromyces marneffei ATCC 18224]
gi|210072983|gb|EEA27070.1| pseudouridylate synthase 3 [Talaromyces marneffei ATCC 18224]
Length = 630
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 136/415 (32%), Positives = 187/415 (45%), Gaps = 134/415 (32%)
Query: 70 GCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKAL 126
G T KK+ +E M T H R++ALK Y GQR+ GF ++GN P T+E EI+KAL
Sbjct: 79 GINTPKKQPRE-MDHTKYH--TRHIALKFAYLGQRYNGFEHANGNATPLPTIEEEIWKAL 135
Query: 127 EKTRLLVA-------------DKKES--------HYSRCGRTDKGVSSVGQVIAIYLRS- 164
KTRL+ D+ + YS+CGRTD+GVS+ GQVI I +RS
Sbjct: 136 RKTRLIFPTTTSPMELSLDRHDRTQPFDLSWDGCQYSKCGRTDRGVSAFGQVIGIRVRSA 195
Query: 165 --------------------------------NIKECNTNNASMGETVQ----------- 181
++ + +N V+
Sbjct: 196 RPKRKVETATSTNVTTTTTGEETTLQPVDVETSVIDSTKDNVEPNLDVEVQPLDEIEEDD 255
Query: 182 -EEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP-TDFSARFSCISREYKYFFWRENLN--- 236
+ I DE+ Y++VLN VLP+DIR++ W P P DF ARFSC R+Y+YFF + N
Sbjct: 256 GWDDIRDELPYIQVLNGVLPQDIRILAWCPNPGPDFDARFSCRERQYRYFFTQPAFNPIA 315
Query: 237 --------------------------LSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKR 269
+ AM A K +VG HDFRNFC++D + + N++R
Sbjct: 316 GELGFLRSAAHHRGIAKKELRDGWLDIEAMREACKHYVGRHDFRNFCRVDTSKQIENFER 375
Query: 270 ------------------HVTSFEISPCYISFEGNQ-------------LCAIKIRGSAF 298
+V S + P + + + GSAF
Sbjct: 376 IIYRASIDLVDPRTNPLGYVGSKDFQPTRNPVDMPNGSNVNEEQPSTPLVYTFTLHGSAF 435
Query: 299 LWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
LWHQVR MVAVLF++GQG+ES ++ LLD + P KP Y MA + PLVL C F
Sbjct: 436 LWHQVRHMVAVLFLVGQGVESPSIVPELLDISKNPCKPTYEMASDAPLVLWDCIF 490
>gi|403417441|emb|CCM04141.1| predicted protein [Fibroporia radiculosa]
Length = 543
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 119/346 (34%), Positives = 180/346 (52%), Gaps = 70/346 (20%)
Query: 89 HFKRYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLL--VADKKESHYSRC 144
H +R +ALK Y G ++ G + PTVE ++ AL TRL+ + + +C
Sbjct: 67 HPRRKIALKFSYNGSQYSGLEYQKTPTSTPTVEGVLYDALVHTRLIDPALGFEGCGWEKC 126
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNN----------ASMGETVQE------------ 182
GRTDKGVS GQV+++++RS ++E + + S+ VQ+
Sbjct: 127 GRTDKGVSGAGQVVSLWIRSALRETGSTSHRSEVERPETTSLSNEVQQHPPRSSEDDTGL 186
Query: 183 -----------------------EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
+QIE E+ YV LN VLP IR+I WSP DFSARF
Sbjct: 187 EGDFALMDDWDEPPTNAALPPPPKQIE-ELRYVSQLNHVLPPTIRIIAWSPVAPDFSARF 245
Query: 220 SCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISP 278
SC R YKYFF L+L+AM+ A + VGEHDFRN CK+D + + ++ R + S +I+P
Sbjct: 246 SCRYRHYKYFFSPRGLDLAAMQDAASRLVGEHDFRNLCKLDPSKQLTSFVRKILSAQINP 305
Query: 279 CYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN-------- 330
+ +G ++ +RG+AFL++QVR ++A+LF++G LE +I+SLL+ +
Sbjct: 306 --VQPDG-EIYVFDLRGTAFLYNQVRHIMAILFLVGTRLEQSCIIDSLLNVDPENPRPPA 362
Query: 331 ----GIP----RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDL 368
+P KP+Y MA +PL+L C +D + DA D+
Sbjct: 363 KEGESVPAVVVSKPEYQMADPLPLMLWECGYDPATVSWRADASPDV 408
>gi|50556320|ref|XP_505568.1| YALI0F18216p [Yarrowia lipolytica]
gi|49651438|emb|CAG78377.1| YALI0F18216p [Yarrowia lipolytica CLIB122]
Length = 443
Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 162/283 (57%), Gaps = 19/283 (6%)
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLV- 133
K K S ++ H R +A++ Y G + G A + PT+E I A+++ RL+
Sbjct: 69 KAKRNESYDISRHPVRKIAIRFSYLGWNYGGLAVQHEDTPLPTIEGTILSAMQRCRLIPE 128
Query: 134 -ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
A + +SRCGRTD+GVS+ QVIA+ +RS + +A+ E++Y+
Sbjct: 129 SASLFDLDFSRCGRTDRGVSAFSQVIALKVRSKLSPEEQQDAANDNK--------ELNYI 180
Query: 193 RVLNRVLPKDIRVIGWS-PAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251
+LN++LP DIR+ + P F +RFSC R Y+YFF + +L++ M A K ++GEH
Sbjct: 181 HILNQLLPPDIRIYSVALRLPEGFDSRFSCEYRHYRYFFHKGDLDIDLMRQAAKLYLGEH 240
Query: 252 DFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
D+RNFCK+D + + ++ R + EI + + ++G AFLWHQVRCM+A+L
Sbjct: 241 DYRNFCKVDGSKQLAHHNRVMLEAEIEQL-----SDDIYYFNLKGRAFLWHQVRCMMAIL 295
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
F++GQ LE VI LL+ P +P Y+MA ++PLVL C F
Sbjct: 296 FLVGQKLEKPSVITDLLNPEKYPGRPVYDMAHDVPLVLYDCTF 338
>gi|325090241|gb|EGC43551.1| pseudouridylate synthase [Ajellomyces capsulatus H88]
Length = 626
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 128/404 (31%), Positives = 176/404 (43%), Gaps = 142/404 (35%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G+ ++GN P T+E E++KAL K RL+ E+
Sbjct: 90 RFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEADGGEGVVGD 149
Query: 140 ------------------HYSRCGRTDKGVSSVGQVIAIYLRSN------IKECNTNNAS 175
YS+CGRTD+GVS+ GQV+ I +RS K N
Sbjct: 150 GESQGREERSYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPHKKAAKRSTGNGNG 209
Query: 176 MGETVQE-------------------------------------EQIEDEIDYVRVLNRV 198
G V + I DE+ Y+ +LNRV
Sbjct: 210 AGNIVSSAEPSTTTSTDAYNSGVENLLGGLSLSGSENSETEDSWDDIADELPYITILNRV 269
Query: 199 LPKDIRVIGWSP-APTDFSARFSCISREYKYFF--------------------------- 230
LP+DIRV+ W P P DF ARFSC R Y+YFF
Sbjct: 270 LPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCLGEG 329
Query: 231 --------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHV--------- 271
+RE L++ AM K +G HDFRNFCK+D + + N+ RH+
Sbjct: 330 SGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELLD 389
Query: 272 --------------TSFEISPCYISFEGN--------QLCAIKIRGSAFLWHQVRCMVAV 309
T+F+ + G+ ++ +I I GSAFLWHQVR + A+
Sbjct: 390 PKTKPLSYLRQHEFTTFDTENYKAAANGSIDDPSSNLKVYSITIHGSAFLWHQVRHLAAI 449
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
LF++GQGLE+ +I LLD PR+P Y +A + PLVL C F
Sbjct: 450 LFLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 493
>gi|240278982|gb|EER42488.1| pseudouridylate synthase [Ajellomyces capsulatus H143]
Length = 626
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 128/404 (31%), Positives = 176/404 (43%), Gaps = 142/404 (35%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G+ ++GN P T+E E++KAL K RL+ E+
Sbjct: 90 RFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEADGGEGVVGD 149
Query: 140 ------------------HYSRCGRTDKGVSSVGQVIAIYLRSN------IKECNTNNAS 175
YS+CGRTD+GVS+ GQV+ I +RS K N
Sbjct: 150 GESQGREERSYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPHKKAAKRSTGNGNG 209
Query: 176 MGETVQE-------------------------------------EQIEDEIDYVRVLNRV 198
G V + I DE+ Y+ +LNRV
Sbjct: 210 AGNIVSSAEPSTTTSTDAYNSGVENLLGGLSLSGSENSETEDSWDDIADELPYITILNRV 269
Query: 199 LPKDIRVIGWSP-APTDFSARFSCISREYKYFF--------------------------- 230
LP+DIRV+ W P P DF ARFSC R Y+YFF
Sbjct: 270 LPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCLGEG 329
Query: 231 --------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHV--------- 271
+RE L++ AM K +G HDFRNFCK+D + + N+ RH+
Sbjct: 330 SGAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELLD 389
Query: 272 --------------TSFEISPCYISFEGN--------QLCAIKIRGSAFLWHQVRCMVAV 309
T+F+ + G+ ++ +I I GSAFLWHQVR + A+
Sbjct: 390 PKTKPLSYLRQHEFTTFDTENYKAAANGSIDDPSSNLKVYSITIHGSAFLWHQVRHLAAI 449
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
LF++GQGLE+ +I LLD PR+P Y +A + PLVL C F
Sbjct: 450 LFLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 493
>gi|407416983|gb|EKF37879.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi
marinkellei]
Length = 459
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 176/340 (51%), Gaps = 29/340 (8%)
Query: 67 ESGGCKT--GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFK 124
++GG T +KK +E+ ++ R VA+++ Y G + G A TVE+ +
Sbjct: 43 DAGGPSTKLTRKKNREERPFLFANYPSRKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVA 102
Query: 125 ALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184
AL+ RL+ D S +RCGRTDKGVS++G ++ +R++ ++
Sbjct: 103 ALKHVRLIPQDGP-SDLARCGRTDKGVSALGNAFSLTVRASSWPTDSPQ----------- 150
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244
+ +DY +LN LP IR++GW+ F ARFSC+ R Y+Y+F LN+ AM A
Sbjct: 151 -KPPLDYCAMLNSALPVTIRIVGWAYVDDSFDARFSCVGRTYRYYFCHRGLNVKAMGDAA 209
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSF-----EISPCYISFEGNQLCAIKIRGSAFL 299
+ G H+FRNFCK D NV NY+R V S E P +S+ +I ++FL
Sbjct: 210 ARLKGVHNFRNFCKTDVVNVSNYERDVRSVGIFASETLPELVSY-------FEIHANSFL 262
Query: 300 WHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359
+HQ+RC + VLF++G+GLE +V+ LL+ RKP Y +A PLVL C F L++
Sbjct: 263 YHQIRCTMEVLFLVGRGLEDPEVVTQLLERGD--RKPVYPLADGTPLVLWDCHFKNLQWN 320
Query: 360 CSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPLANG 399
S A + L++ L+A++ + NG
Sbjct: 321 ISKRAFTAVEHELQDIATALFLRASVANSMRSQLFTWYNG 360
>gi|407852041|gb|EKG05708.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 526
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 176/333 (52%), Gaps = 27/333 (8%)
Query: 72 KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL 131
K +KK +E+ +++ R VA+++ Y G + G A TVE+ + AL+ RL
Sbjct: 117 KMTRKKNREERPFLFSNYPSRKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRL 176
Query: 132 LVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDY 191
+ D +RCGRTDKGVS++G V ++ +R++ ++ + +DY
Sbjct: 177 IPQDGP-IDLARCGRTDKGVSALGNVFSLTVRASSWPTDSPQ------------KPALDY 223
Query: 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251
+LN LP IR++GW+ F ARFSC+ R Y+Y+F LN+ AM +A + G H
Sbjct: 224 CAMLNSALPVTIRIVGWAYVDDTFDARFSCVGRTYRYYFCHRGLNVEAMGNAAARLKGVH 283
Query: 252 DFRNFCKMDAANVHNYKRHVTSF-----EISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+FRNFCK D NV NY+R V S E P +S+ ++I ++FL+HQ+RC
Sbjct: 284 NFRNFCKTDVVNVSNYERDVRSVGIFASEALPELVSY-------LEIHANSFLYHQIRCT 336
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGH 366
+ VLF++G+GLE +V+ LL+ RKP Y +A PLVL C F L++ S A
Sbjct: 337 MEVLFLVGRGLEDPEVVTQLLERGD--RKPVYPLADGTPLVLWDCHFKNLQWNISKRAFM 394
Query: 367 DLRLHLRNECQVYQLQAAIFHEALLNCLPLANG 399
+ L++ L+A++ + L NG
Sbjct: 395 AVEHELQDIATALFLRASLANSMRSQLLTWYNG 427
>gi|358338575|dbj|GAA57020.1| tRNA pseudouridine synthase 3, partial [Clonorchis sinensis]
Length = 368
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 155/279 (55%), Gaps = 18/279 (6%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
KR VA + Y G + G A N TV ++ A EK RL + D+ ++ CGRTDKG
Sbjct: 3 KRRVAFQFAYLGWNYSGLAIQ-NFGVTVMQKLMDAFEKARL-IEDRISCDFTVCGRTDKG 60
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEE-QIED-EIDYVRVLNRVLPKDIRVIGW 208
VS++GQV+++ +RS + G + E I D E+DYV +LN++LP DIR++ W
Sbjct: 61 VSALGQVVSLVVRSALVSGLGIVDDSGTAINERPSIPDVELDYVFLLNKLLPPDIRILAW 120
Query: 209 SPAPTDFSAR-----------FSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFC 257
SP DFSAR F+C R Y YF L+++ M A K+ G HDFRNFC
Sbjct: 121 SPVGADFSARYSVFFFYNCLRFTCCQRSYTYFIPCSGLDITMMAEAAKRLEGTHDFRNFC 180
Query: 258 KMDAAN-VHNYKRHVTSF--EISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
++ + + + R + S + + + +C I I GS FL+HQVRC+VA+L IG
Sbjct: 181 SINLEHELPVFVRRIDSVLVRLEDTSVMCDPTTMCEISITGSGFLYHQVRCIVALLVTIG 240
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G ES +I+ LLD P KPQY MA + PL+L ++
Sbjct: 241 RGYESPSLIDDLLDIEKTPAKPQYQMAADYPLILMGAEY 279
>gi|402076494|gb|EJT71917.1| tRNA-pseudouridine synthase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 672
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 129/396 (32%), Positives = 184/396 (46%), Gaps = 110/396 (27%)
Query: 67 ESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNME-PTVESEIFKA 125
E G K K + N+ R++ALK+ Y G + GF N + PT+E E++KA
Sbjct: 94 ERQGQARAPPPKKRKFADPSNYS-TRFIALKLAYLGGNYNGFEYQANGKLPTIEEELWKA 152
Query: 126 LEKTRLLVADKKESH-------YSRCGRTDKGVSSVGQVIAIYLRSNI------KECNTN 172
L KT L+ ++ YS+CGRTD+GVS+ GQV+A+ +RSN K+
Sbjct: 153 LVKTCLVFPERGPDEVDFASCEYSKCGRTDRGVSAFGQVVALRVRSNRPVPRARKQQQQQ 212
Query: 173 NAS-----------------------MGETVQEEQ---------------IEDEIDYVRV 194
+A+ GE + ++ + DEI Y ++
Sbjct: 213 HAAGSSAEAGDGAAVAAAAELEAPEATGEEGRRQEDDDDDDDDSDETPYPVADEIKYCKL 272
Query: 195 LNRVLPKDIRVIGWSPAPTD-FSARFSCISREYKYFFWREN------------------- 234
LNR LP DIR + W P P FSARFSC R+Y+YFF +
Sbjct: 273 LNRTLPPDIRALAWCPTPPPGFSARFSCRERQYRYFFTQPAFAPAPAVLEGAHHPSSSAG 332
Query: 235 ----------LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI------- 276
L + AM A + F G HDFRNFCK+DA+ + N++R V +I
Sbjct: 333 SGGRRVKDGYLGIEAMREAARHFEGSHDFRNFCKIDASKQIGNFERRVLEADIVEVPDTT 392
Query: 277 -------SPCYISFE---GNQLCA---------IKIRGSAFLWHQVRCMVAVLFMIGQGL 317
P ++ + G+ L +RG+AFLWHQ+R MVAVLF++GQGL
Sbjct: 393 SALPYLDRPEFLPGQDGNGDSLAVDPPRPRVYYFHVRGTAFLWHQIRHMVAVLFLVGQGL 452
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
E V+ LLD + P +P Y++A + PLVL C F
Sbjct: 453 EKPSVVADLLDVSRYPGRPNYHLASDAPLVLWDCLF 488
>gi|225560228|gb|EEH08510.1| pseudouridylate synthase [Ajellomyces capsulatus G186AR]
Length = 625
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/403 (31%), Positives = 176/403 (43%), Gaps = 141/403 (34%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G+ ++GN P T+E E++KAL K RL+ E+
Sbjct: 90 RFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEADGGEGVVGD 149
Query: 140 ------------------HYSRCGRTDKGVSSVGQVIAIYLRS-----NIKECNTNNASM 176
YS+CGRTD+GVS+ GQV+ I +RS + N
Sbjct: 150 GESQGREERSYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPHKKAAKSTGNGNGA 209
Query: 177 GETVQE-------------------------------------EQIEDEIDYVRVLNRVL 199
G V + I DE+ Y+ +LNRVL
Sbjct: 210 GNIVSSAEPSTTTSTDAYNSGVENLLGGLSLSGSENSETEDSWDDIADELPYITILNRVL 269
Query: 200 PKDIRVIGWSP-APTDFSARFSCISREYKYFF------------------------W--- 231
P+DIRV+ W P P DF ARFSC R Y+YFF W
Sbjct: 270 PEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCLWEGS 329
Query: 232 --------REN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHV---------- 271
RE L++ AM K +G HDFRNFCK+D + + N+ RH+
Sbjct: 330 GAPHNEQFREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELLDP 389
Query: 272 -------------TSFEISPCYISFEGN--------QLCAIKIRGSAFLWHQVRCMVAVL 310
T+F+ + G+ ++ +I I GSAFLWHQVR + A+L
Sbjct: 390 KTKPLSYLRQHEFTTFDTENDKAAANGSIDDPSSNLKVYSITIHGSAFLWHQVRHLAAIL 449
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
F++GQGLE+ +I LLD PR+P Y +A + PLVL C F
Sbjct: 450 FLVGQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 492
>gi|71665382|ref|XP_819661.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70884973|gb|EAN97810.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 429
Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/333 (33%), Positives = 175/333 (52%), Gaps = 27/333 (8%)
Query: 72 KTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL 131
K +KK +E+ ++ R VA+++ Y G + G A TVE+ + AL+ RL
Sbjct: 20 KMTRKKNREERPFLFANYPSRKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRL 79
Query: 132 LVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDY 191
+ D +RCGRTDKGVS++G V ++ +R++ ++ + +DY
Sbjct: 80 IPQDGPID-LARCGRTDKGVSALGNVFSLTVRASSWPTDSPQ------------KPALDY 126
Query: 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251
+LN LP IR++GW+ F ARFSC+ R Y+Y+F LN+ AM +A + G H
Sbjct: 127 CAMLNSALPVTIRIVGWAYVDDTFDARFSCVGRTYRYYFCHRGLNVEAMGNAAARLKGVH 186
Query: 252 DFRNFCKMDAANVHNYKRHVTSF-----EISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+FRNFCK D NV NY+R V S E P +S+ ++I ++FL+HQ+RC
Sbjct: 187 NFRNFCKTDVVNVSNYERDVRSVGIFASEAFPELVSY-------LEIHANSFLYHQIRCT 239
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGH 366
+ VLF++G+GLE +V+ LL+ RKP Y +A PLVL C F L++ S A
Sbjct: 240 MEVLFLVGRGLEDPEVVTQLLERGD--RKPVYPLADGTPLVLWDCHFKNLQWNISKRAFM 297
Query: 367 DLRLHLRNECQVYQLQAAIFHEALLNCLPLANG 399
+ L++ L+A++ + L NG
Sbjct: 298 AVEHELQDIATALFLRASLANSMRSQLLTWYNG 330
>gi|58271292|ref|XP_572802.1| pseudouridylate synthase [Cryptococcus neoformans var. neoformans
JEC21]
gi|57229061|gb|AAW45495.1| pseudouridylate synthase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 514
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/348 (32%), Positives = 161/348 (46%), Gaps = 51/348 (14%)
Query: 57 TTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFK----RYVALKVMYFGQRFYGFA--- 109
T+LV K++ + K HF R++AL + Y G + G A
Sbjct: 34 TSLVPSQEPLPPQTATATKQERRSKKKAEKPFHFPAHPTRHIALLISYHGWPYSGLALQA 93
Query: 110 ---SDGNMEPTVESEIFKALEKTRLLVADK--KESHYSRCGRTDKGVSSVGQVIAIYLRS 164
DG PTVE+E+ ALEKTRL+ K + + RCGRTD+GVS GQV+ +++RS
Sbjct: 94 PATPDGPPVPTVEAELLAALEKTRLIAEGKGWEGCGFGRCGRTDRGVSGEGQVVNLWVRS 153
Query: 165 NIK--------------------------------ECNTNNASMGETVQEEQIEDEIDYV 192
+ K E + +Q + E Y
Sbjct: 154 SRKRGDGGGELGDGWRDAVEPEVEKMEKTVIVQEDEEKGVKEKKSKVIQPPRQPSEFPYP 213
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF------WRENLNLSAMESAGKK 246
++LN VLP IR++ WSP P F +RFSC R Y+Y F L+L M +
Sbjct: 214 KLLNSVLPPSIRILAWSPIPASFDSRFSCTYRHYRYAFHTRPTPTSPELDLELMRQGAQL 273
Query: 247 FVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRC 305
+GEHD+RNFCK+D + + N+ R V G+ + + G+AFLWHQVR
Sbjct: 274 LLGEHDYRNFCKLDGSKQIENHTRGVLKAWFEGGKSQGVGDGMMVFNLIGTAFLWHQVRH 333
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
++AVLF++G LE ++ LLD P KP Y M +PL L C +
Sbjct: 334 IIAVLFLVGAKLEPPSIVSDLLDVKRFPSKPNYTMGHPLPLTLHHCGY 381
>gi|426193721|gb|EKV43654.1| hypothetical protein AGABI2DRAFT_188010 [Agaricus bisporus var.
bisporus H97]
Length = 612
Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 124/368 (33%), Positives = 183/368 (49%), Gaps = 81/368 (22%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVADK--KESHY 141
++H KR +ALK Y G + G A + PTVE+ +F+AL K RL+ D + +
Sbjct: 74 FSNHPKRKIALKFCYSGWEYGGLAYQTGPTQLPTVEAVLFEALAKARLIDRDGGMEGCRW 133
Query: 142 SRCGRTDKGVSSVGQVIAIYLRS---------------------NIKECNTNN------- 173
+CGRTDKGVS+ GQVI+++LRS ++E +TN
Sbjct: 134 EKCGRTDKGVSAAGQVISLWLRSAVGSVEEGQGKGKGKEVGLVNQVEEGSTNQHQDSGLP 193
Query: 174 ------------ASMGETVQEEQI--------EDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ G ++ +I E+DYV +LNR+LP IR++ W+P
Sbjct: 194 GLSEEDFGTLDLSEPGSPIEATKILQDSSSKSRHELDYVGILNRLLPPTIRILAWAPVAE 253
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDA-ANVHNYKRHVT 272
+FSARFSC R YKYFF L++SAM A +GEHDFRN CK+DA + ++R++
Sbjct: 254 NFSARFSCKYRHYKYFFSSHLLDISAMREAATHLIGEHDFRNLCKVDAQKQITMFRRNIL 313
Query: 273 SFEISPCYISFEGNQ---LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
+I P I GN + + GSAFL+HQVR ++A+LF++G GLE ++ L++
Sbjct: 314 RADIEPV-IDPSGNNGEGMFVFNLVGSAFLYHQVRHIMAILFLVGTGLEEPSLVTKLMNV 372
Query: 330 -NG---------------IPRKPQYNMAPEIPLVLQSCDF--------DGLKFTCSLDAG 365
+G + RKP+Y MA +PL+L C + G + D
Sbjct: 373 FDGAENRDLAICETRLEVLDRKPEYQMADALPLMLWDCAYAEEDVKWRTGTLEPSAQDHN 432
Query: 366 HDLRLHLR 373
HD H R
Sbjct: 433 HDTDEHSR 440
>gi|169854752|ref|XP_001834048.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130]
gi|116504845|gb|EAU87740.1| pseudouridine synthase [Coprinopsis cinerea okayama7#130]
Length = 511
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 119/337 (35%), Positives = 174/337 (51%), Gaps = 67/337 (19%)
Query: 91 KRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVADK--KESHYSRCGR 146
+R +ALK Y G + G A D PTVE +F AL L+ ++ + + RCGR
Sbjct: 57 RRKIALKFSYAGWDYGGLAYQPDDTPLPTVEGVLFDALSTAHLVDSNAGLEGCGWERCGR 116
Query: 147 TDKGVSSVGQVIAIYLRSNIKE----------------CNTNNASM------GETVQEE- 183
TD+GVS Q++++++RS +++ N+ A+M E V +E
Sbjct: 117 TDRGVSGARQIVSVWVRSALRKEELAEADIRPGPVAFPPNSRRAAMDDDDDLPERVDDEP 176
Query: 184 ----------------QIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYK 227
Q +E DYV +LNR+LP+ IRV WSP P+ FSARFSC R YK
Sbjct: 177 VIVNGQDLWKPDTVEPQSRNEHDYVSILNRLLPETIRVSAWSPVPSTFSARFSCNFRHYK 236
Query: 228 YFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGN 286
YFF + L++ M+ A + +GEHDFRN CK+D A + ++KR V S +I +
Sbjct: 237 YFFTPKGLDIVRMQEAAGRLIGEHDFRNLCKLDPAKQITSFKRKVMS-----AHIERLND 291
Query: 287 QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG--------------I 332
L + GSAFL+HQVR ++A+LF+IG G+ES ++ +LL+ +
Sbjct: 292 NLHVFNLTGSAFLYHQVRHIMAILFLIGMGMESPSLVSNLLNVTSDSEVPRADDLPYEIV 351
Query: 333 PRKPQYNMAPEIPLVLQSCDFDGLKF----TCSLDAG 365
RKP+Y MA +PL+L C + F T DAG
Sbjct: 352 DRKPEYQMADGLPLMLWDCGYPEGTFDWRTTGKPDAG 388
>gi|225681814|gb|EEH20098.1| pseudouridylate synthase [Paracoccidioides brasiliensis Pb03]
Length = 641
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 150/501 (29%), Positives = 215/501 (42%), Gaps = 164/501 (32%)
Query: 18 ALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKK 77
+L +R+ ELE +L+ + K DG ++ + + E + S + KK
Sbjct: 29 SLISRITELE-------RQLNYYQNNNDGKKQADGSKERISSITETAASHSPSRSSPNKK 81
Query: 78 VKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVA 134
++ N R++ALK Y GQR+ G+ S+GN+ P T+E E++KAL K RL+
Sbjct: 82 HRDIDPSKYN---TRFIALKFAYLGQRYGGYEHSNGNITPLPTIEEELWKALRKARLIFP 138
Query: 135 DKKES---------------------------HYSRCGRTDKGVSSVGQVIAIYLRSNIK 167
E YS+CGRTD+GVS+ GQV+ I +RS
Sbjct: 139 QSVEGDGQAQVERGEGEQGEGERLHTIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARP 198
Query: 168 E---------------------------CNTNNA--SMGETV----------------QE 182
+ T +A S ET +
Sbjct: 199 KKQVVTDGRGKEGPGAVGIAAVATPEISSTTPDAYRSGAETPLVGASGCASEESDNEDEW 258
Query: 183 EQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF----------- 230
+ I DE+ Y+ +LNRVLP+DIRV+ W P P+DF ARFSC R Y+YFF
Sbjct: 259 DDIADELPYITILNRVLPEDIRVLAWCPNPPSDFDARFSCRERRYRYFFTQPAFSPTPGP 318
Query: 231 ----------------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHN 266
RE L++ AM + +G HDFRNFCK+D + + N
Sbjct: 319 LGFLKRGSDQKSSGSDSSPSTELREGWLDIEAMREGARYLIGTHDFRNFCKIDPSKQITN 378
Query: 267 YKRHVTSFEI--------------SPCYISFE-GN-------------------QLCAIK 292
+ RH+ +I P + + E GN ++ +I
Sbjct: 379 HVRHIYHADIELLDPQTKPLSYLGQPEFQALEAGNGELDRNLVTKDSLLSSSNMKIYSIT 438
Query: 293 IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCD 352
I GSAFLWHQVR + A+LF+IGQGLE +I LLD PR+P Y +A + PLVL C
Sbjct: 439 IHGSAFLWHQVRHLAAILFLIGQGLERPSIIPELLDIEKNPRRPTYEIASDAPLVLWDCI 498
Query: 353 F---------DGLKFTCSLDA 364
F DGL + + D+
Sbjct: 499 FPHGRSGSREDGLDWVYAGDS 519
>gi|336468412|gb|EGO56575.1| hypothetical protein NEUTE1DRAFT_83903 [Neurospora tetrasperma FGSC
2508]
gi|350289332|gb|EGZ70557.1| pseudouridine synthase [Neurospora tetrasperma FGSC 2509]
Length = 540
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 158/318 (49%), Gaps = 73/318 (22%)
Query: 92 RYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKES------HYSRC 144
R +ALK Y G+ + GF + + P++E E++KAL K+ L+ ++ + YS+C
Sbjct: 59 RLIALKFAYLGKNYNGFEYQSSAKMPSIEEELWKALVKSCLIFPERPDEVDFGPWEYSKC 118
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
GRTD+G ++ E + + I DEI Y RVLNR+LP DIR
Sbjct: 119 GRTDRGAAA--------------EVDHQKPEW------DPIADEIPYCRVLNRLLPPDIR 158
Query: 205 VIGWSPA-PTDFSARFSCISREYKYFFWREN-------------------------LNLS 238
++ W+P P +FSARFSC R+Y+YFF + L++
Sbjct: 159 IMAWAPDLPPNFSARFSCRERQYRYFFTQPAFAPMPSTLEPPLASSGQKSGGKQGWLDID 218
Query: 239 AMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRH--------VTSFEISPCYISFEGNQLC 289
M A K F G HDFRNFCK+D + N+ R V E Y+ Q
Sbjct: 219 MMRKAAKMFEGVHDFRNFCKIDPGKQITNFSRRIFESDIVEVKDLESDLPYLGLPEFQPP 278
Query: 290 A-----------IKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQY 338
A +RGSAFLWHQ+R MVAVLF++GQGLE +++ LLD PRKP Y
Sbjct: 279 AGSDGSHPKVYYFHVRGSAFLWHQIRHMVAVLFLVGQGLEPPSIVQQLLDVEKNPRKPNY 338
Query: 339 NMAPEIPLVLQSCDFDGL 356
MA E+PLVL C F L
Sbjct: 339 VMADEVPLVLWDCIFPKL 356
>gi|123976924|ref|XP_001330657.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis
G3]
gi|121897278|gb|EAY02404.1| tRNA pseudouridine synthase A family protein [Trichomonas vaginalis
G3]
Length = 353
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 170/321 (52%), Gaps = 21/321 (6%)
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK 136
K K K + + + +R +AL++ Y G GF + TVE IF+AL++ +L + ++
Sbjct: 5 KPKTKKEFSWDQYHERQIALRIAYIGWNLKGFVLQNDTNETVEYHIFEALKRAKL-IRNE 63
Query: 137 KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASM---GETVQEEQIEDEIDYVR 193
E +YS CGRTD GVS VG VI++ +RS C T S+ G VQ+E E++Y +
Sbjct: 64 NECNYSLCGRTDAGVSGVGNVISVRVRS---VCPTGLGSIPREGAKVQKE----EMNYAQ 116
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
+LN +LP IRV G + DF+ARF C +R Y+YFF + + N+ M+ A + +GEHD+
Sbjct: 117 ILNGILPPSIRVTGVAYVKPDFNARFDCATRGYRYFFHKFDKNIDLMKEAAEHLLGEHDY 176
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
R FCK + + R +I C G + +I GS F+WHQ+RC+ ++LF +
Sbjct: 177 RAFCKFSPDSTKHCVR-----KIYKCEFGDAGGGVWYFEIVGSGFIWHQIRCIASILFAV 231
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLR 373
G G E + + LL+T P +P Y +A PLV + ++ + + ++ +
Sbjct: 232 GNGFEKPSITKELLNTAKYPGRPNYPIADPEPLVFWNAGYENIDWKIDEAVEKKMKTNF- 290
Query: 374 NECQVYQLQAAIFHEALLNCL 394
QL A A+L C
Sbjct: 291 ----ALQLIDAEMRAAVLRCF 307
>gi|295671354|ref|XP_002796224.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284357|gb|EEH39923.1| tRNA pseudouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 700
Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 134/427 (31%), Positives = 184/427 (43%), Gaps = 154/427 (36%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G+ S+GN+ P T+E E++KAL K RL+ E
Sbjct: 149 RFIALKFAYLGQRYGGYEHSNGNITPLPTIEEELWKALRKARLIFPQSVEGDGQVQVERG 208
Query: 140 ------------------HYSRCGRTDKGVSSVGQVIAIYLRS----------------- 164
YS+CGRTD+GVS+ GQV+ I +RS
Sbjct: 209 EGEQGEGERLHTIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKRVVTDGRGKEGQ 268
Query: 165 -----------NIKECNTNNASMG--------------ETVQE---EQIEDEIDYVRVLN 196
I + S G E+ E + I DE+ Y+ +LN
Sbjct: 269 GAVSIAAVATPEISSTTPDAYSSGAETPLVEAPSCASEESDNEGGWDDIADELPYITILN 328
Query: 197 RVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF------------------------- 230
RVLP+DIRV+ W P P+DF ARFSC R Y+YFF
Sbjct: 329 RVLPEDIRVLAWCPNPPSDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGSDQKSSV 388
Query: 231 --------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI---- 276
RE L++ AM + +G HDFRNFCK+D + + N+ RH+ +I
Sbjct: 389 SGSSPITELREGWLDIEAMREGARYLIGTHDFRNFCKIDPSKQITNHVRHIYHADIELLD 448
Query: 277 ----------SPCYISFEGN--------------------QLCAIKIRGSAFLWHQVRCM 306
P + + E ++ +I I GSAFLWHQVR +
Sbjct: 449 PQTKPLSYLGQPEFQALEARNGELGRNLVSKDSLLSSSNMKIYSITIHGSAFLWHQVRHL 508
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF---------DGLK 357
A+LF+IGQGLE +I LLD PR+P Y +A + PLVL C F DGL
Sbjct: 509 AAILFLIGQGLERPSIIPELLDFEKNPRRPTYEIASDAPLVLWDCIFPHGRSGSREDGLD 568
Query: 358 FTCSLDA 364
+ + D+
Sbjct: 569 WVYAGDS 575
>gi|392572819|gb|EIW65963.1| hypothetical protein TREMEDRAFT_35686 [Tremella mesenterica DSM
1558]
Length = 472
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 165/331 (49%), Gaps = 59/331 (17%)
Query: 79 KEKMSGTLNH--HFKRYVALKVMYFGQRFYGFA-------SDGNMEPTVESEIFKALEKT 129
K K+ + +H H R++AL Y G + G A + PTVE E+ KALEKT
Sbjct: 16 KPKVVKSYDHSSHPTRHIALLFAYNGWPYSGVAYQLPPAQQAKDPLPTVEGELLKALEKT 75
Query: 130 RLLVADK--KESHYSRCGRTDKGVSSVGQVIAIYLRS---------NIKECNTNNASM-- 176
RL+ + + Y RCGRTD+GVSS GQV ++++RS KE + +++S
Sbjct: 76 RLVRPNVGLEGCGYGRCGRTDRGVSSAGQVASLWVRSVRKDGVKLGAWKESSNHSSSTLE 135
Query: 177 ---------GETVQEEQI---------EDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSAR 218
E V+ E E+E+ Y R+LN VLP IRV+ W+P DF +R
Sbjct: 136 SNLTRLNEETEKVRNESSKRIKSKTTKEEELSYPRLLNSVLPPSIRVLAWAPVEEDFDSR 195
Query: 219 FSCISREYKYFFWRE---------------NLNLSAMESAGKKFVGEHDFRNFCKMDAAN 263
FSC R YKY F R+ L++ M A + +G HDFRNFCK+D +
Sbjct: 196 FSCEYRHYKYIFHRKIPGFHSTPNKHPPSRELDIPLMTLAAQSLIGTHDFRNFCKLDGSK 255
Query: 264 VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVI 323
HV I Y + G+AFLWHQVR +VA+LF+IG LES ++
Sbjct: 256 --QLLSHVR--RILQAYFEPSSPDTIVFNLIGTAFLWHQVRHIVAILFLIGSHLESPTLV 311
Query: 324 ESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+LLD P +P Y MA +PL L C +D
Sbjct: 312 SNLLDVEKFPARPNYAMAHPLPLTLWECKYD 342
>gi|71663014|ref|XP_818505.1| pseudouridine synthase A-like protein [Trypanosoma cruzi strain CL
Brener]
gi|70883761|gb|EAN96654.1| pseudouridine synthase A-like protein, putative [Trypanosoma cruzi]
Length = 409
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 174/330 (52%), Gaps = 27/330 (8%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA 134
+KK +E+ ++ R VA+++ Y G + G A TVE+ + AL+ RL+
Sbjct: 3 RKKNREERPFLFANYPSRKVAIRLAYHGHLYDGLAKQEETSNTVEAYVVAALKHVRLIPQ 62
Query: 135 DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRV 194
D +RCGRTDKGVS++G V ++ +R++ ++ + +DY +
Sbjct: 63 DGPID-LARCGRTDKGVSALGNVFSLTVRASSWPTDSPQ------------KPPLDYCAM 109
Query: 195 LNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFR 254
LN LP IR++GW+ F ARFSC+ R Y+Y+F LN+ AM +A + G H+FR
Sbjct: 110 LNSALPVTIRIVGWAYVDDTFDARFSCVGRTYRYYFCHRGLNVEAMGNAAARLKGVHNFR 169
Query: 255 NFCKMDAANVHNYKRHVTSF-----EISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
NFCK D NV NY+R V S E P +S+ ++I ++FL+HQ+RC + V
Sbjct: 170 NFCKTDVVNVSNYERDVRSVGIFASEAFPELVSY-------LEIHANSFLYHQIRCTMEV 222
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
LF++G+GLE +V+ LL+ RKP Y +A PL+L C F L++ S A +
Sbjct: 223 LFLVGRGLEDPEVVTQLLERGD--RKPVYPLADGTPLLLWDCHFKNLQWNISKRAFMVVE 280
Query: 370 LHLRNECQVYQLQAAIFHEALLNCLPLANG 399
L++ L+A++ + L NG
Sbjct: 281 HELQDIATALFLRASLANSMRSQLLTWYNG 310
>gi|154320712|ref|XP_001559672.1| hypothetical protein BC1G_01828 [Botryotinia fuckeliana B05.10]
Length = 575
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 172/378 (45%), Gaps = 116/378 (30%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVA-----------DKKE 138
R +ALK+ Y G+R+ GF + P T+E E+++AL K RL+ + +
Sbjct: 58 RLIALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIFPQGVNPLAPGEVNWEG 117
Query: 139 SHYSRCGRTDKGVSSVGQVIAI----------------------------------YLRS 164
YS+CGRTDKGVS+ GQVI I Y R
Sbjct: 118 CEYSKCGRTDKGVSAFGQVIGIRVRSNRPLPKSKVKPTQEEFVEGEAGAEEDIYNTYPRE 177
Query: 165 NIKECNT----------------------NNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
N E + ++ + E++ + I DEI Y +VLNR+LP D
Sbjct: 178 NGIEVTSAPLSPSAGVPGPQGSDSGTFRLSDPDIQESLDFDHITDEIPYPQVLNRLLPPD 237
Query: 203 IRVIGWSPAPT-DFSARFSCISREYKYFFWREN---------------------LNLSAM 240
IR++ W P+P DFSARFSC R Y+YFF + L++ AM
Sbjct: 238 IRILAWCPSPPIDFSARFSCRERRYRYFFTQPAFSPIPSQLEHGTSASKMKDGWLDIDAM 297
Query: 241 ESAGKKFVGEHDFRNFCKMDAA-NVHNYKRH--------VTSFEISPCYIS--------- 282
A + + G HDFRNFCK+D + N++R V + S Y++
Sbjct: 298 REAARLYEGLHDFRNFCKVDPGKQITNFERRIFYANIEEVDDYTSSLAYVNGGSFLDESV 357
Query: 283 -------FEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRK 335
+ ++ + GSAFLWHQVR MVA+LF++GQGLE V+ LLD P +
Sbjct: 358 RSKADGEIKAPKIYTFDLHGSAFLWHQVRHMVAILFLVGQGLEKPSVVTELLDVEKNPGR 417
Query: 336 PQYNMAPEIPLVLQSCDF 353
P Y MA + PLVL C F
Sbjct: 418 PTYEMATDTPLVLWDCIF 435
>gi|449544039|gb|EMD35013.1| hypothetical protein CERSUDRAFT_85755 [Ceriporiopsis subvermispora
B]
Length = 519
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 131/407 (32%), Positives = 188/407 (46%), Gaps = 101/407 (24%)
Query: 89 HFKRYVALKVMYFGQRFYGFASD--GNMEPTVESEIFKALEKTRLLVADKKES----HYS 142
H +R +AL+ Y G + G + PTVE +++AL T+L+ D KE +
Sbjct: 48 HPRRKIALRFSYNGGEYGGLEAQKIPTPLPTVEGVLYEALVHTKLI--DPKEGMDGCGWE 105
Query: 143 RCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGE------------TVQEEQIED--- 187
+CGRTDKGVS+ GQVI++++RS + E S E TV Q D
Sbjct: 106 KCGRTDKGVSAAGQVISLWVRSALGEVKAEADSAVEASTSSTSQDAKTTVGTSQPADAGE 165
Query: 188 --------------------------------EIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
E++YV +LN VLP IR+ W+P +F
Sbjct: 166 DATGLEGDFALMGDWDEPPTSNSLPPPTKPTTELNYVSLLNNVLPPTIRINAWAPVAPEF 225
Query: 216 SARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDA-ANVHNYKRHVTSF 274
SARFSC R YKYFF L+L AM A + VGEHDFRN CK+D + ++ R + S
Sbjct: 226 SARFSCRYRHYKYFFSPHGLDLDAMRDAASRLVGEHDFRNLCKVDPQKQLTSFARRILSA 285
Query: 275 EISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN---- 330
EI+P E + + +RG AFL++QVR ++AVLF++G LE V+++L++T+
Sbjct: 286 EINPAIPPHE--DMYVLDLRGQAFLYNQVRHIMAVLFLVGTRLEQPSVMDALMNTDPANP 343
Query: 331 ------GIP------RKPQYNMAPEIPLVLQSCDFD-------GLKFTCSLDAGHDLRLH 371
G P KP+Y MA PLVL C +D G D+G + H
Sbjct: 344 KPPSHPGEPAPPIVESKPEYQMAQPFPLVLWDCGYDPALVRWQGGPEGAECDSGEGVYTH 403
Query: 372 LRNECQVYQ----------LQAAI----------FHEALLNCLPLAN 398
+ +Y +QAA+ FH CLP+ +
Sbjct: 404 KQAASSLYGQLHALHERALVQAALDAHFLRAAEPFHAPPPQCLPVGH 450
>gi|347838967|emb|CCD53539.1| similar to pseudouridylate synthase 3 [Botryotinia fuckeliana]
Length = 608
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 123/378 (32%), Positives = 172/378 (45%), Gaps = 116/378 (30%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVA-----------DKKE 138
R +ALK+ Y G+R+ GF + P T+E E+++AL K RL+ + +
Sbjct: 91 RLIALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIFPQGVNPLAPGEVNWEG 150
Query: 139 SHYSRCGRTDKGVSSVGQVIAI----------------------------------YLRS 164
YS+CGRTDKGVS+ GQVI I Y R
Sbjct: 151 CEYSKCGRTDKGVSAFGQVIGIRVRSNRPLPKSKVKPTQEEFVEGEAGAEEDIYNTYPRE 210
Query: 165 NIKECNT----------------------NNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
N E + ++ + E++ + I DEI Y +VLNR+LP D
Sbjct: 211 NGIEVTSAPLSPSAGVPGPQGSDSGTFRLSDPDIQESLDFDHITDEIPYPQVLNRLLPPD 270
Query: 203 IRVIGWSPAPT-DFSARFSCISREYKYFFWREN---------------------LNLSAM 240
IR++ W P+P DFSARFSC R Y+YFF + L++ AM
Sbjct: 271 IRILAWCPSPPIDFSARFSCRERRYRYFFTQPAFSPIPSQLEHGTSASKMKDGWLDIDAM 330
Query: 241 ESAGKKFVGEHDFRNFCKMDAA-NVHNYKRH--------VTSFEISPCYIS--------- 282
A + + G HDFRNFCK+D + N++R V + S Y++
Sbjct: 331 REAARLYEGLHDFRNFCKVDPGKQITNFERRIFYANIEEVDDYTSSLAYVNGGSFLDESV 390
Query: 283 -------FEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRK 335
+ ++ + GSAFLWHQVR MVA+LF++GQGLE V+ LLD P +
Sbjct: 391 RSKADGEIKAPKIYTFDLHGSAFLWHQVRHMVAILFLVGQGLEKPSVVTELLDVEKNPGR 450
Query: 336 PQYNMAPEIPLVLQSCDF 353
P Y MA + PLVL C F
Sbjct: 451 PTYEMATDTPLVLWDCIF 468
>gi|389623455|ref|XP_003709381.1| tRNA-pseudouridine synthase [Magnaporthe oryzae 70-15]
gi|351648910|gb|EHA56769.1| tRNA-pseudouridine synthase [Magnaporthe oryzae 70-15]
Length = 694
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 175/361 (48%), Gaps = 98/361 (27%)
Query: 92 RYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLLVADKKES---------H 140
RY+ALK+ Y G+ + G + G + P +E E++KAL KT L+ D +
Sbjct: 166 RYIALKLAYLGKNYNGLEYQPSGAL-PAIEEELWKALVKTCLIFPDPERDPSEVDFKVCD 224
Query: 141 YSRCGRTDKGVSSVGQVIAIYLRSNIK----------------------ECNTNNASMGE 178
YS+CGRTD+GVS+ GQV+A+ ++SN +A+ +
Sbjct: 225 YSKCGRTDRGVSAFGQVVALRVKSNKPLRKKKQSAVQLDQDGSGEAASASTGAVDAAGAQ 284
Query: 179 TVQEEQ------------------IEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARF 219
V E+ + EI Y ++LN VLP DIRV+ W P P FSAR
Sbjct: 285 VVPEDSQPGQEDEQEGEEDDAPYPADKEIKYCKMLNAVLPVDIRVLAWCPNPPPGFSARH 344
Query: 220 SCISREYKYFF-----------------WREN--------LNLSAMESAGKKFVGEHDFR 254
SC R+Y+YFF ++E L+L AM A + F GEHDFR
Sbjct: 345 SCHERQYRYFFTQPIFSPVPARLDGVMGYKEPGSTHKDGYLDLDAMREAARLFEGEHDFR 404
Query: 255 NFCKMDAA-NVHNYKRHVTSFEI--------------SPCY-ISFEGNQ----LCAIKIR 294
NFCK+DA+ + N+KR + I +P + S E +Q + +R
Sbjct: 405 NFCKIDASKQISNFKRLIREASIVEVPEAASSLPYLDTPDFRPSGEDSQARPKVYYFHVR 464
Query: 295 GSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
GSAFLWHQ+R M+AVLF++GQ LE ++ LLD P KP Y MA + PLVL C +
Sbjct: 465 GSAFLWHQIRHMIAVLFLVGQRLEKPSIVSELLDIEKYPGKPNYPMASDAPLVLWDCLYG 524
Query: 355 G 355
G
Sbjct: 525 G 525
>gi|440469549|gb|ELQ38657.1| hypothetical protein OOU_Y34scaffold00533g41 [Magnaporthe oryzae
Y34]
gi|440485616|gb|ELQ65557.1| hypothetical protein OOW_P131scaffold00480g7 [Magnaporthe oryzae
P131]
Length = 625
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 175/361 (48%), Gaps = 98/361 (27%)
Query: 92 RYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLLVADKKES---------H 140
RY+ALK+ Y G+ + G + G + P +E E++KAL KT L+ D +
Sbjct: 97 RYIALKLAYLGKNYNGLEYQPSGAL-PAIEEELWKALVKTCLIFPDPERDPSEVDFKVCD 155
Query: 141 YSRCGRTDKGVSSVGQVIAIYLRSNIK----------------------ECNTNNASMGE 178
YS+CGRTD+GVS+ GQV+A+ ++SN +A+ +
Sbjct: 156 YSKCGRTDRGVSAFGQVVALRVKSNKPLRKKKQSAVQLDQDGSGEAASASTGAVDAAGAQ 215
Query: 179 TVQEEQ------------------IEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARF 219
V E+ + EI Y ++LN VLP DIRV+ W P P FSAR
Sbjct: 216 VVPEDSQPGQEDEQEGEEDDAPYPADKEIKYCKMLNAVLPVDIRVLAWCPNPPPGFSARH 275
Query: 220 SCISREYKYFF-----------------WREN--------LNLSAMESAGKKFVGEHDFR 254
SC R+Y+YFF ++E L+L AM A + F GEHDFR
Sbjct: 276 SCHERQYRYFFTQPIFSPVPARLDGVMGYKEPGSTHKDGYLDLDAMREAARLFEGEHDFR 335
Query: 255 NFCKMDAA-NVHNYKRHVTSFEI--------------SPCY-ISFEGNQ----LCAIKIR 294
NFCK+DA+ + N+KR + I +P + S E +Q + +R
Sbjct: 336 NFCKIDASKQISNFKRLIREASIVEVPEAASSLPYLDTPDFRPSGEDSQARPKVYYFHVR 395
Query: 295 GSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
GSAFLWHQ+R M+AVLF++GQ LE ++ LLD P KP Y MA + PLVL C +
Sbjct: 396 GSAFLWHQIRHMIAVLFLVGQRLEKPSIVSELLDIEKYPGKPNYPMASDAPLVLWDCLYG 455
Query: 355 G 355
G
Sbjct: 456 G 456
>gi|409075831|gb|EKM76207.1| hypothetical protein AGABI1DRAFT_108952 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 598
Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 181/368 (49%), Gaps = 81/368 (22%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVADK--KESHY 141
++H KR +ALK Y G + G A + PTVE+ +F+A K RL+ D + +
Sbjct: 74 FSNHPKRKIALKFCYSGWEYGGLAYQTGPTQLPTVEAVLFEAFAKARLIDRDGGMEGCGW 133
Query: 142 SRCGRTDKGVSSVGQVIAIYLRS---------------------NIKECNTNN------- 173
+CGRTDKGVS+ GQVI+++LRS ++E +TN
Sbjct: 134 EKCGRTDKGVSAAGQVISLWLRSAVGSVEEEQGKGKGTEIGLVNPVEEGSTNQHQDSGVP 193
Query: 174 ------------ASMGETVQEEQI--------EDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ +G + I E+DYV +LNR+LP IR++ W+P
Sbjct: 194 GLSEEDFGTLDLSELGSPIAATTILQDSSSKSRHELDYVGILNRLLPPTIRILAWAPVAE 253
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDA-ANVHNYKRHVT 272
+FSARFSC R YKYFF L++SAM A +GEHDFRN CK+DA + ++R++
Sbjct: 254 NFSARFSCKYRHYKYFFSSHLLDISAMREAATHLIGEHDFRNLCKVDAQKQITMFRRNIL 313
Query: 273 SFEISPCYISFEGNQ---LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
+I P + GN + + GSAFL+HQVR ++A+LF++G GLE ++ L++
Sbjct: 314 RADIEPV-VDPSGNNDEAMFVFNLVGSAFLYHQVRHIMAILFLVGTGLEEPSLVTKLMNA 372
Query: 330 -NG---------------IPRKPQYNMAPEIPLVLQSCDF--------DGLKFTCSLDAG 365
+G + RKP+Y MA +PL+L C + G + D
Sbjct: 373 FDGAENRDLAICETRLEVLDRKPEYQMADALPLMLWDCAYAEEDVKWRTGTLEPSAQDHN 432
Query: 366 HDLRLHLR 373
HD H R
Sbjct: 433 HDTDEHSR 440
>gi|156040419|ref|XP_001587196.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980]
gi|154696282|gb|EDN96020.1| hypothetical protein SS1G_12226 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 592
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 126/378 (33%), Positives = 170/378 (44%), Gaps = 116/378 (30%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVADKKES---------- 139
R +ALK+ Y G+R+ GF + P T+E E+++AL K RL+
Sbjct: 58 RLIALKLAYLGKRYNGFEHHAHPTPLTTIEEELWQALNKARLIFPQGVNPMAPGEVNWEG 117
Query: 140 -HYSRCGRTDKGVSSVGQVIAI----------------------------------YLRS 164
YS+CGRTDKGVS+ GQVI I Y R
Sbjct: 118 CEYSKCGRTDKGVSAFGQVIGIRVRSNRPLAKPKAKPASEESVEGKIAAEDDMYNTYPRE 177
Query: 165 NIKECNT----------------------NNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
N E + ++ + E++ I DEI Y +VLNR+LP D
Sbjct: 178 NGIEVTSAPLSPSAGIPGPRGTDSGAFVLSDPHIQESLDFNHITDEIPYPQVLNRLLPPD 237
Query: 203 IRVIGWSPAP-TDFSARFSCISREYKYFFWREN---------------------LNLSAM 240
IR++ W P+P DFSARFSC R Y+YFF + L++ AM
Sbjct: 238 IRILAWCPSPPVDFSARFSCRERRYRYFFTQPAFSPIPSQLEHGASASKMKDGWLDIEAM 297
Query: 241 ESAGKKFVGEHDFRNFCKMDAA-NVHNYKRH--------VTSFEISPCYI---SF----- 283
A K + G HDFRNFCK+D + N++R V + S Y+ SF
Sbjct: 298 REAAKLYEGLHDFRNFCKVDPGKQITNFERRIFYANIEEVKDYTSSLAYVNGDSFLDDSI 357
Query: 284 --------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRK 335
+ ++ + GSAFLWHQVR MVA+LF++GQGLE V+ LLD P +
Sbjct: 358 RSKIDGESKAPKVYTFDLHGSAFLWHQVRHMVAILFLVGQGLEKPSVVSELLDVEKNPGR 417
Query: 336 PQYNMAPEIPLVLQSCDF 353
P Y MA + PLVL C F
Sbjct: 418 PAYEMATDTPLVLWDCIF 435
>gi|351698951|gb|EHB01870.1| tRNA pseudouridine synthase 3 [Heterocephalus glaber]
Length = 292
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 121/178 (67%), Gaps = 7/178 (3%)
Query: 188 EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKF 247
EI Y +LNRVLP DIRV+ W+P + FSARFSC+ R Y+YFF +L++ M A +K+
Sbjct: 42 EIRYTHILNRVLPPDIRVLAWAPVESSFSARFSCLERTYRYFFPCADLDIVRMNYAAQKY 101
Query: 248 VGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLW 300
VG HDFRN CKMD AN V N++R + S ++ S E QLC ++ G AFL+
Sbjct: 102 VGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSLGEERWQEPFQLCQFEVTGQAFLY 161
Query: 301 HQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
HQVRCM+A+LF+IGQG+E +VI+ LL+ P+KPQY+MA E PL+L C F+ +K+
Sbjct: 162 HQVRCMMAILFLIGQGMEKPEVIDELLNIEKNPQKPQYSMAVEFPLILYDCKFENIKW 219
>gi|402588277|gb|EJW82210.1| pseudouridylate synthase [Wuchereria bancrofti]
Length = 353
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 144/255 (56%), Gaps = 15/255 (5%)
Query: 124 KALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC-NTNNASMGETVQE 182
KAL KT+L V + ++R GRTDKGVS+ QV ++ +RSN E + ++ E
Sbjct: 3 KALIKTKL-VESWENCSWNRSGRTDKGVSAFKQVASLIVRSNGPEGEDVFWPNVAHASSE 61
Query: 183 EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMES 242
++ E+ YV++LN LP +IRV+ W+P P +FSAR++C R Y Y F R N N+ AM
Sbjct: 62 TAVKGELQYVKMLNSTLPTNIRVLAWAPVPRNFSARYNCTQRTYTYAFPRNNFNIEAMRQ 121
Query: 243 AGKKFVGEHDFRNFCKMDAANVH---NYKRHVTSFEI--------SPCYISFEGN--QLC 289
A + VGEHDFRNFC++D NY R +T +I S +S E +
Sbjct: 122 ACRLLVGEHDFRNFCRIDMNKKRVEMNYIRTITYADISFISNNSMSSSKLSNEATRYEFL 181
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
+ I+G FLWHQ+RC++A+L IG G E ++I LLD IP KP Y +AP PL L
Sbjct: 182 QLTIKGKGFLWHQIRCIMALLCEIGLGNEKPNIITELLDIKLIPSKPIYGLAPAFPLCLF 241
Query: 350 SCDFDGLKFTCSLDA 364
C ++G + D
Sbjct: 242 DCSYEGTELPWRWDT 256
>gi|71985046|ref|NP_496062.3| Protein TAG-124 [Caenorhabditis elegans]
gi|1353139|sp|Q09524.1|TG124_CAEEL RecName: Full=Probable tRNA pseudouridine synthase tag-124;
AltName: Full=tRNA pseudouridylate synthase; AltName:
Full=tRNA-uridine isomerase
gi|3875428|emb|CAA87378.1| Protein TAG-124 [Caenorhabditis elegans]
Length = 402
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 156/297 (52%), Gaps = 18/297 (6%)
Query: 71 CKTGKKKVKEKMSGTLNH--HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEK 128
C VK K + TL+ H +R +A++ Y G G + + TVE+ I +AL K
Sbjct: 7 CPDANNSVKSKKAKTLDFLAHPRRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIK 66
Query: 129 TRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASM-GETVQEEQIED 187
T L + D + +SRCGRTDKGVS+ Q A+ +RS C ++ ++ QE Q D
Sbjct: 67 THL-IEDWTKCDFSRCGRTDKGVSAFKQTAAMVVRS---LCPGDSGVFWSDSTQEHQKVD 122
Query: 188 ------EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAME 241
E+ YV++LN VLPK IRV W+P F+ARF C R YKY F + +LNL M
Sbjct: 123 YKASGEELPYVKMLNGVLPKTIRVFAWAPVAQTFNARFDCNRRTYKYSFAKADLNLEKMR 182
Query: 242 SAGKKFVGEHDFRNFCKMDAAN---VHNYKRHVTSFEISPCYISFEGN--QLCAIKIRGS 296
+ VGEHDF NFC++D + +Y R V ++ E + + + + GS
Sbjct: 183 QGAELLVGEHDFSNFCQIDMNEKRLLQSYVRKVYEVKVEQVSTHPENDMYSMVELTVSGS 242
Query: 297 AFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
FLWH +R +V +L IG+ E +I LLD P +PQY +A + PL L C +
Sbjct: 243 GFLWHMIRYIVTILQEIGRENEQPSLISQLLDLKKYPSRPQYTLASDTPLCLFDCGY 299
>gi|407919213|gb|EKG12467.1| Pseudouridine synthase I TruA [Macrophomina phaseolina MS6]
Length = 609
Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 130/380 (34%), Positives = 170/380 (44%), Gaps = 119/380 (31%)
Query: 92 RYVALKVMYFGQRFYGF---ASDGNMEPTVESEIFKALEKTRLLVADKKES--------- 139
R +ALK Y G + GF A++ PT+E E++KAL KTRL++ K
Sbjct: 82 RLIALKFAYLGSNYNGFEHHANNMTPLPTIEEELWKALNKTRLILPTPKPGLKEDDINWE 141
Query: 140 --HYSRCGRTDKGVSSVGQVIAIYLRSN----------------IKECNTNNASMGETVQ 181
YS+CGRTD+GVS+ GQVI + +RSN A E V+
Sbjct: 142 GCEYSKCGRTDRGVSAFGQVIGVRVRSNRPKPKPKKKQKLEDGAAAAAQEGGADAMEGVE 201
Query: 182 E----------------------EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD-FSAR 218
+ ++DE+ Y RVLN VLP DIRV+ W P P D FSAR
Sbjct: 202 TGADAAVAAAEAGAEEEYEEPPFDDVKDEMPYCRVLNNVLPPDIRVLAWCPNPGDSFSAR 261
Query: 219 FSCISREYKYFF---------------------WREN-LNLSAMESAGKKFVGEHDFRNF 256
F+C R YKYFF RE L+++AM A G HDFRNF
Sbjct: 262 FNCKERRYKYFFTNPAFAPTPGAAGVYGGGEQSMREGWLDIAAMREAASYLEGLHDFRNF 321
Query: 257 CKMDAA-NVHNYKRHV--------------------TSFEISPCYISFE----------- 284
CK+D A + N++R + F+I P E
Sbjct: 322 CKVDPAKQITNFERRIFHASIDRWNGGSGFARYTQNPQFQI-PGLKPEERQSVVVGSGSG 380
Query: 285 -----------GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
G L + GSAFLWHQVR ++AVLF++GQGLE +++ LLD P
Sbjct: 381 SGNDRDGDENHGPGLFTFNVHGSAFLWHQVRHLIAVLFLVGQGLEKPTIVKELLDVRSNP 440
Query: 334 RKPQYNMAPEIPLVLQSCDF 353
KP+Y MA + PLVL C F
Sbjct: 441 TKPKYEMASDTPLVLWDCIF 460
>gi|328861209|gb|EGG10313.1| hypothetical protein MELLADRAFT_76951 [Melampsora larici-populina
98AG31]
Length = 568
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 133/437 (30%), Positives = 200/437 (45%), Gaps = 109/437 (24%)
Query: 17 EALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKK 76
E L +++K+LE +LS + K+ + E NR GKK
Sbjct: 15 EELISKIKDLEG-------RLSTLKVSKLSKDLLQSTSGIQNQQEGNRIDLMTTPAIGKK 67
Query: 77 KVKEKMSGTLNHHFKRY----VALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTR 130
K FK+Y +AL+++Y G G A + P TVE E+FKAL R
Sbjct: 68 LKHIKQQSQKKFEFKKYPTRKIALQIVYQGWNHGGLAWQPEITPLTTVEGELFKALLSAR 127
Query: 131 LL----------------------VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI-- 166
L+ D + YSR GRTD GVS GQV+++++RSN+
Sbjct: 128 LVEMSEEFQEEDREEILKTEEWREAVDLEGWEYSRAGRTDAGVSGSGQVVSLWVRSNLLD 187
Query: 167 -------------------------KECNTNNASMGETVQEEQI----EDEIDYVRVLNR 197
+ + N + + I ++E+ Y+ +LN
Sbjct: 188 SKLRQELLDSKQSPPGSFRDPEGFERSTDEENEEVHPKILNSSISNKPQEELPYISILNS 247
Query: 198 VLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR------ENLNLSAMESAGKKFVGEH 251
+LP+ I+VI WSP T+F ARFSC R YKYFF + ++L++ M KK +GEH
Sbjct: 248 LLPESIKVIAWSPVSTEFDARFSCKGRHYKYFFTKFESDLNQSLDIEMMREGAKKLIGEH 307
Query: 252 DFRNFCKMD-AANVHNYKRHVTSFEIS--------PCYISFEG-------------NQLC 289
DFRN CK+D + + N+KR + S EI+ P + +G NQ+
Sbjct: 308 DFRNLCKLDKSKQIENFKREIYSAEINLVDENAIGPEFNKNDGLEGSVGQDGLGEKNQMY 367
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG---------------IPR 334
+RGSAFL++QVR ++A+LF+IG LES ++I+ LL T+ + R
Sbjct: 368 VFDLRGSAFLYNQVRNIMAILFLIGSRLESPNLIDGLLYTDSSAQKPEGLGLITDEFVDR 427
Query: 335 KPQYNMAPEIPLVLQSC 351
KP+ +A E+PL+L C
Sbjct: 428 KPEMAIASELPLLLWDC 444
>gi|402224351|gb|EJU04414.1| pseudouridine synthase [Dacryopinax sp. DJM-731 SS1]
Length = 506
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 117/327 (35%), Positives = 158/327 (48%), Gaps = 65/327 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLL--VADKKESHYSRCGR 146
KR +ALK Y G + G P TVES + AL TRL+ V + + Y + GR
Sbjct: 55 KRKIALKFCYHGWEYCGLEKQKGYTPIPTVESVLESALIATRLIDPVEGFEGAGYGKSGR 114
Query: 147 TDKGVSSVGQVIAIYLRSNIK--------------------------------------- 167
TD+GVS+ GQV+++++RS +
Sbjct: 115 TDRGVSAAGQVVSLWVRSMVAGGANDGERKEAEEVNLALDDEEVDDSFEPLTESMELVSQ 174
Query: 168 ---ECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISR 224
E +T + +T E EI Y RVLNRVLP IRV+ WSP +DF ARFSCI R
Sbjct: 175 LLAEQDTPEVLVDDTQHLLPTEGEIPYARVLNRVLPPSIRVLAWSPVHSDFEARFSCIGR 234
Query: 225 EYKYFF-WRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVH-NYKRHVTSFEISPCYIS 282
YKYFF L+LS M A + G HD+RNFC++D + Y R + + P
Sbjct: 235 HYKYFFRLHPGLDLSRMRDAAARMKGTHDWRNFCRLDGSKGDVRYVRTIEDVTLEPV-AK 293
Query: 283 FEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT---NGIPR----- 334
E L + ++G FLWHQ+R + AVLF++GQGLE V+ S+L+T N +P
Sbjct: 294 DEDPTLYVLNVQGHGFLWHQIRHIAAVLFLVGQGLEHPSVVTSMLNTDQSNPLPPFREDE 353
Query: 335 --------KPQYNMAPEIPLVLQSCDF 353
KP Y MA +PLVL C +
Sbjct: 354 PLPEIVEGKPNYEMADALPLVLWDCRY 380
>gi|353229978|emb|CCD76149.1| putative pseudouridylate synthase [Schistosoma mansoni]
Length = 1030
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 153/272 (56%), Gaps = 15/272 (5%)
Query: 129 TRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ--IE 186
T+ + D+ E +S CGRTD+GVS + QVI++ RS I G + E Q +
Sbjct: 682 TKPFIFDRNECDFSVCGRTDRGVSGMCQVISLVSRSLIARGVGVIEDSGPCISERQDVPD 741
Query: 187 DEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKK 246
+E+DYV LNR LP+DIRV+ WSP DFSARF C R Y+Y+F L++ +M AG +
Sbjct: 742 EEMDYVSALNRNLPRDIRVLAWSPVSPDFSARFMCCKRSYEYYFPESGLDIKSMIDAGNR 801
Query: 247 FVGEHDFRNFC--KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
VG HDFRNFC +++ V + R + +S ++LC I I S FL+HQ+R
Sbjct: 802 LVGVHDFRNFCASRIEKDTV-TFIREIFEVVVSDVDSCDHHSKLCRISISASGFLYHQIR 860
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL------QSCDFDGLKF 358
++++LFM+G+G ES V++ +LD + P KPQY +A + PL+ +SC L +
Sbjct: 861 FVMSILFMVGRGYESPSVVDDMLDLSKTPAKPQYQLAADFPLLFIAGIYPESC----LNW 916
Query: 359 TCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL 390
S A DL H + Y +++AI L
Sbjct: 917 ETSEAARLDLVKHYQKLWSEYGIRSAIVRRML 948
>gi|256087925|ref|XP_002580112.1| pseudouridylate synthase [Schistosoma mansoni]
Length = 1304
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 153/272 (56%), Gaps = 15/272 (5%)
Query: 129 TRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ--IE 186
T+ + D+ E +S CGRTD+GVS + QVI++ RS I G + E Q +
Sbjct: 956 TKPFIFDRNECDFSVCGRTDRGVSGMCQVISLVSRSLIARGVGVIEDSGPCISERQDVPD 1015
Query: 187 DEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKK 246
+E+DYV LNR LP+DIRV+ WSP DFSARF C R Y+Y+F L++ +M AG +
Sbjct: 1016 EEMDYVSALNRNLPRDIRVLAWSPVSPDFSARFMCCKRSYEYYFPESGLDIKSMIDAGNR 1075
Query: 247 FVGEHDFRNFC--KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
VG HDFRNFC +++ V + R + +S ++LC I I S FL+HQ+R
Sbjct: 1076 LVGVHDFRNFCASRIEKDTV-TFIREIFEVVVSDVDSCDHHSKLCRISISASGFLYHQIR 1134
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL------QSCDFDGLKF 358
++++LFM+G+G ES V++ +LD + P KPQY +A + PL+ +SC L +
Sbjct: 1135 FVMSILFMVGRGYESPSVVDDMLDLSKTPAKPQYQLAADFPLLFIAGIYPESC----LNW 1190
Query: 359 TCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL 390
S A DL H + Y +++AI L
Sbjct: 1191 ETSEAARLDLVKHYQKLWSEYGIRSAIVRRML 1222
>gi|164659606|ref|XP_001730927.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966]
gi|159104825|gb|EDP43713.1| hypothetical protein MGL_1926 [Malassezia globosa CBS 7966]
Length = 604
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 119/349 (34%), Positives = 176/349 (50%), Gaps = 45/349 (12%)
Query: 19 LQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKV 78
L R+ +LE A L + + E + + GV +T E + + C KK+
Sbjct: 15 LLRRIAQLEGRAASL--GVDVPPAEPADARAA-GV--ASTNAESDTTVQPSICSPAKKQP 69
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASD-GNMEP--TVESEIFKALEKTRLLVAD 135
+ ++ R +AL+ Y G + G A+ G M P TVE I++AL RL+ A
Sbjct: 70 RHY---DVSAQPSRKIALRFCYDGGSYSGLAAQMGQMTPLPTVEETIWEALCTARLVDAT 126
Query: 136 KK--ESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQE--EQIEDEIDY 191
K + +SRCGRTD GVS+ GQV+A+++RS + GE + ++E+ Y
Sbjct: 127 KSMDDVDWSRCGRTDAGVSAAGQVVALWIRSRCVDERPLRYKTGEAAIPLTDTSDEELPY 186
Query: 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF---------WRE--------N 234
V LNR+LP IR+ WSP FSARF C+ R YKYFF W+
Sbjct: 187 VATLNRLLPPTIRIQAWSPVRPTFSARFDCVYRHYKYFFTLGAPSTLVWQPESLSQFSGR 246
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCA--- 290
L+L M A + VGEHDFRN CK+DA+ + N++R + I P + + A
Sbjct: 247 LDLDRMRDAAARLVGEHDFRNMCKVDASKQITNFRRRIDGASIDPVCRGWSDRPIPAPDP 306
Query: 291 ---------IKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
+ +RGSAFL+HQVR ++AVLFM+G LE +++ LL+ +
Sbjct: 307 HSTDEPMYVLNLRGSAFLYHQVRHIMAVLFMVGARLEDPSIVDELLNVH 355
>gi|261201021|ref|XP_002626911.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis SLH14081]
gi|239593983|gb|EEQ76564.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis SLH14081]
Length = 718
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 127/409 (31%), Positives = 171/409 (41%), Gaps = 147/409 (35%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G+ ++GN P T+E E++KAL K RL+ E
Sbjct: 165 RFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSEDDM 224
Query: 140 ----------------------HYSRCGRTDKGVSSVGQVIAIYLRSNIKE--------- 168
YS+CGRTD+GVS+ GQV+ I +RS +
Sbjct: 225 GGVNAEQDRGDGRAYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKRVEVKSDG 284
Query: 169 --------CNTNNASMGETVQ--------------------------EEQIEDEIDYVRV 194
T S G + + I DE+ Y+ +
Sbjct: 285 TGTDVGAVVTTAEVSAGASTNVYDSGVESPLGGLSFSGSENSDTEDDWDDIADELPYITI 344
Query: 195 LNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFFW---------------------- 231
LNRVLP+DIRV+ W P P DF ARFSC R Y+YFF
Sbjct: 345 LNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQG 404
Query: 232 -------------REN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI 276
RE L++ AM K +G HDFRNFCK+D + + N+ RH+ +I
Sbjct: 405 SERSPNGAHTEQPREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADI 464
Query: 277 --------------SPCY------------------ISFEGNQLCAIKIRGSAFLWHQVR 304
P + S ++ I I GSAFLWHQVR
Sbjct: 465 ELLDPKTKPLSYLGQPGFRPLKSEHDRTTANESTWDTSTSNIKIYTITIHGSAFLWHQVR 524
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ A+LF++GQGLE +I LLD PR+P Y +A + PLVL C F
Sbjct: 525 HLAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVF 573
>gi|327351094|gb|EGE79951.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis ATCC 18188]
Length = 718
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 127/409 (31%), Positives = 171/409 (41%), Gaps = 147/409 (35%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G+ ++GN P T+E E++KAL K RL+ E
Sbjct: 165 RFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSEDDM 224
Query: 140 ----------------------HYSRCGRTDKGVSSVGQVIAIYLRSNIKE--------- 168
YS+CGRTD+GVS+ GQV+ I +RS +
Sbjct: 225 GGVNAEQDRGDGRAYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKRVEVKSDG 284
Query: 169 --------CNTNNASMGETVQ--------------------------EEQIEDEIDYVRV 194
T S G + + I DE+ Y+ +
Sbjct: 285 TGTDVGAVVTTAEVSAGASTNVYDSGVESPLGGLSFSGSENSDTEDDWDDIADELPYITI 344
Query: 195 LNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFFW---------------------- 231
LNRVLP+DIRV+ W P P DF ARFSC R Y+YFF
Sbjct: 345 LNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQG 404
Query: 232 -------------REN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI 276
RE L++ AM K +G HDFRNFCK+D + + N+ RH+ +I
Sbjct: 405 SERSPNGAHTEQPREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADI 464
Query: 277 --------------SPCY------------------ISFEGNQLCAIKIRGSAFLWHQVR 304
P + S ++ I I GSAFLWHQVR
Sbjct: 465 ELLDPKTKPLSYLGQPGFGPLKSEHDRTTANESTWDTSTSNIKIYTITIHGSAFLWHQVR 524
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ A+LF++GQGLE +I LLD PR+P Y +A + PLVL C F
Sbjct: 525 HLAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVF 573
>gi|239607141|gb|EEQ84128.1| pseudouridylate synthase 3 [Ajellomyces dermatitidis ER-3]
Length = 664
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 128/409 (31%), Positives = 174/409 (42%), Gaps = 147/409 (35%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKES--------- 139
R++ALK Y GQR+ G+ ++GN P T+E E++KAL K RL+ E
Sbjct: 111 RFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEGEGVGSEDDM 170
Query: 140 ----------------------HYSRCGRTDKGVSSVGQVIAIYLRS------------- 164
YS+CGRTD+GVS+ GQV+ I +RS
Sbjct: 171 GGVNAEQDRGDGRAYKIDWTGCQYSKCGRTDRGVSAFGQVVGIRVRSARPKKRVEVKSDG 230
Query: 165 ---NIKECNTN---NASMGETVQEEQIE------------------------DEIDYVRV 194
++ TN +A V + +E DE+ Y+ +
Sbjct: 231 TGTDVGAVVTNAEVSAGASTNVYDSGVESPLGGLSFSGSENSDTEDDWDDIADELPYITI 290
Query: 195 LNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFFW---------------------- 231
LNRVLP+DIRV+ W P P DF ARFSC R Y+YFF
Sbjct: 291 LNRVLPEDIRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGRQEQG 350
Query: 232 -------------REN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI 276
RE L++ AM K +G HDFRNFCK+D + + N+ RH+ +I
Sbjct: 351 SERSPNGAHTEQPREGWLDIEAMREGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADI 410
Query: 277 --------------SPCY------------------ISFEGNQLCAIKIRGSAFLWHQVR 304
P + S ++ I I GSAFLWHQVR
Sbjct: 411 ELLDPKTKPLSYLGQPGFRPLKSEHDRTTANESTWDTSTSNIKIYTITIHGSAFLWHQVR 470
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ A+LF++GQGLE +I LLD PR+P Y +A + PLVL C F
Sbjct: 471 HLAAILFLVGQGLEPPSIIPELLDVERNPRRPTYEIASDAPLVLWDCVF 519
>gi|324501041|gb|ADY40469.1| tRNA pseudouridine synthase tag-124 [Ascaris suum]
gi|324504466|gb|ADY41930.1| tRNA pseudouridine synthase tag-124 [Ascaris suum]
Length = 388
Score = 184 bits (467), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 163/313 (52%), Gaps = 24/313 (7%)
Query: 99 MYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVI 158
+Y+G + G + TVE I AL +TRL+ + K + R GRTDKGVS+ Q+
Sbjct: 3 LYYGWEYEGLVQQQDTVNTVEEVIKDALLRTRLIESWNK-CEWIRSGRTDKGVSAFRQIA 61
Query: 159 AIYLRSNIKECN----TNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
++ +RS+ E NA + E+ Y+++LN VLPK+IRV+ W+P D
Sbjct: 62 SLIVRSSDPEGEHVFWPENADPHSRITPPH--SELMYLKMLNGVLPKNIRVLAWAPVALD 119
Query: 215 FSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVH---NYKRHV 271
F+ARFSC R YKY F R + +L A+ A +GEHDFRN C++D +Y R V
Sbjct: 120 FNARFSCTKRVYKYAFPRGDFDLEAIRKACSLLIGEHDFRNICRIDLNKARVEMSYVRMV 179
Query: 272 TSFEISPCYISFEGNQ------------LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
IS S E + L + S FLWHQ+RC++A+++ IG+G E
Sbjct: 180 FDASISVVLESGERVEVSSEPEPHSPYSLVEFTMISSGFLWHQIRCVMALMYEIGKGNEK 239
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD--GLKFTCSLDAGHDLRLHLRNECQ 377
+VI LLD PRKP Y +AP PL L C + LK+ L + H ++ HL N
Sbjct: 240 PEVISELLDIEKTPRKPAYGLAPSSPLCLFDCSYGDIDLKWNWDLISLHKIKSHLLNTWA 299
Query: 378 VYQLQAAIFHEAL 390
++ ++ I + +
Sbjct: 300 DFKTKSMILRKMI 312
>gi|390596437|gb|EIN05839.1| pseudouridine synthase [Punctularia strigosozonata HHB-11173 SS5]
Length = 538
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 114/329 (34%), Positives = 159/329 (48%), Gaps = 65/329 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASD--GNMEPTVESEIFKALEKTRLL--VADKKESHYSRCGR 146
+R +ALK Y G + G A + PTVE ++ AL TRL+ A + + +CGR
Sbjct: 66 RRKIALKFSYAGSEYSGLAYQKLPSALPTVEGVLWDALTYTRLVDGPAGMDATGWEKCGR 125
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQE---------EQIEDEID------- 190
TD GVSS GQVI+ ++RSN+ E N S + QE E ++D D
Sbjct: 126 TDAGVSSAGQVISFWVRSNLDENAVNTLSTARSQQEHPAPQQPSAESVQDSDDGPGLEGD 185
Query: 191 ---------------------------YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCIS 223
Y+ +LNRVLP IRV+ WSP DFSAR +C
Sbjct: 186 LGFMGDLEPEAGPVALPTHLQKKAEFRYISMLNRVLPPTIRVLAWSPVAPDFSARHNCKY 245
Query: 224 REYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYIS 282
R YKYFF E LN+ AM A + VGEHDFRN +D + + ++ R + EISP
Sbjct: 246 RHYKYFFDAERLNIDAMRDAASRLVGEHDFRNLSTLDPSKQLTSFNRRILRAEISPVAPE 305
Query: 283 FE-GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG---------- 331
+ + + G AFL++QVR ++AVL ++G LE V+ +LL+ +
Sbjct: 306 MKCAGGMHVFDLVGRAFLFNQVRRIMAVLMLVGTELEPPSVVSALLNADPEHPAPAWCDA 365
Query: 332 ------IPRKPQYNMAPEIPLVLQSCDFD 354
+ R P Y MA +PLVL C +D
Sbjct: 366 EDPPPVLERSPVYRMADPLPLVLWDCGYD 394
>gi|395326839|gb|EJF59244.1| tRNA pseudouridine synthase [Dichomitus squalens LYAD-421 SS1]
Length = 516
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 117/335 (34%), Positives = 168/335 (50%), Gaps = 71/335 (21%)
Query: 86 LNHHFKRYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLLVADK--KESHY 141
N + KR +ALK Y G + G F D + PTVE +F AL T+L+ D + +
Sbjct: 57 FNAYPKRKIALKFTYNGIHYGGMEFQRDPAL-PTVEGVLFDALVHTKLVDRDGGLEGCDW 115
Query: 142 SRCGRTDKGVSSVGQVIAIYLRSNIK-------ECNTNNAS------------------- 175
RCGRTDKGVS+ GQV+++++RSN+ E + NA
Sbjct: 116 QRCGRTDKGVSAGGQVVSLWVRSNLGSKTAAEIEEDVANAEPSTTTEQLPTSAEDAEGPG 175
Query: 176 -------MGETVQE------------EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFS 216
MG+ E Q E E YV LN +LP IRV+ WSP DFS
Sbjct: 176 LEGDFGLMGDLADEGPTNGSMHAQPPPQAELEFPYVFALNHILPPTIRVLAWSPVADDFS 235
Query: 217 ARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFE 275
ARFSC R YKYFF L+L+AM+ A + +GEHDFRN CK+DA+ + + R +
Sbjct: 236 ARFSCRWRHYKYFFSPSGLDLAAMQDAASRLLGEHDFRNLCKIDASKQITVFTRRILHAS 295
Query: 276 ISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG---- 331
I + +L +RG+AFL++ VR ++A+LF++G GLE ++ +LL+ +
Sbjct: 296 ID----RADKGELYVFNLRGNAFLYNMVRHIMAILFLVGSGLERPSIMSALLNADPARPL 351
Query: 332 --------IPR----KPQYNMAPEIPLVLQSCDFD 354
+P KP Y +A +PL+L C +D
Sbjct: 352 PPFREGEDVPPLVTGKPDYQIADPLPLMLWECGYD 386
>gi|390365271|ref|XP_794710.3| PREDICTED: tRNA pseudouridine(38/39) synthase-like
[Strongylocentrotus purpuratus]
Length = 282
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 129/213 (60%), Gaps = 4/213 (1%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R+VALK+ Y G ++GF + TVE +F+AL KT+L + ++ S+YSRCGRTDKGV
Sbjct: 71 RHVALKITYLGWDYHGFVVQEDSNNTVEHHLFEALTKTKL-IESRQTSNYSRCGRTDKGV 129
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEIDYVRVLNRVLPKDIRVIGWS 209
S+ GQVIAI LR+N+ + + T E +EI+Y +LNRVLP +IRVI W+
Sbjct: 130 SAFGQVIAIDLRTNLLQGVGVIQRLDGTAHERTGNTTEEINYPLMLNRVLPSEIRVIAWT 189
Query: 210 PAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN-VHNYK 268
PA F ARF + R YKYFF +L+ M A +K VG DFRNFCKMD N V +
Sbjct: 190 PAEPSFHARFDTLHRTYKYFFPAGDLDTKLMNEASQKLVGTFDFRNFCKMDVGNGVVKFV 249
Query: 269 RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWH 301
R + S EI S G Q+C I G AFL+H
Sbjct: 250 RTIRSAEIRKLDDSSGGFQMCEFSISGLAFLYH 282
>gi|226288982|gb|EEH44494.1| tRNA pseudouridine synthase [Paracoccidioides brasiliensis Pb18]
Length = 574
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 132/434 (30%), Positives = 196/434 (45%), Gaps = 97/434 (22%)
Query: 18 ALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKK 77
+L +R+ ELE +L+ + K DG ++ + + E + S + KK
Sbjct: 29 SLISRITELE-------RQLNYYQNNNDGKKQADGSKEHISSITETAASHSPSRSSPNKK 81
Query: 78 VKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVA 134
++ N R++ALK Y GQR+ G+ S+GN+ P T+E E++KAL K RL+
Sbjct: 82 HRDIDPSKYN---TRFIALKFAYLGQRYGGYEHSNGNITPLPTIEEELWKALRKARLIFP 138
Query: 135 DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKE--CNTNNASMGETVQEEQ---IEDEI 189
E + RS + + + E+ E++ I DE+
Sbjct: 139 QSVEGDGQAQVERAVATPEISSTTPDAYRSGAETPLVGASGCASEESDNEDEWDDIADEL 198
Query: 190 DYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFF------------------ 230
Y+ +LN+VLP+DIRV+ W P P+DF ARFSC R Y+YFF
Sbjct: 199 PYITILNKVLPEDIRVLAWCPNPPSDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRG 258
Query: 231 ---------------WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTS 273
RE L++ AM + +G HDFRNFCK+D + + N+ RH+
Sbjct: 259 SDQKSSGSDSYPSTELREGWLDIEAMREGARYLIGTHDFRNFCKIDPSKQITNHVRHIYH 318
Query: 274 FEI--------------SPCYISFE-GN-------------------QLCAIKIRGSAFL 299
+I P + + E GN ++ +I I GSAFL
Sbjct: 319 ADIELLDPQTKPLSYLGQPEFQALEAGNGEVDRNLVTKDSLLSSSNMKIYSITIHGSAFL 378
Query: 300 WHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF------ 353
WHQVR + A+LF+IGQGLE +I LLD PR+P Y +A + PLVL C F
Sbjct: 379 WHQVRHLAAILFLIGQGLERPSIIPELLDIEKNPRRPTYEIASDAPLVLWDCIFPHGRSG 438
Query: 354 ---DGLKFTCSLDA 364
DGL + + D+
Sbjct: 439 SREDGLDWVYAGDS 452
>gi|154276726|ref|XP_001539208.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414281|gb|EDN09646.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 555
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 163/340 (47%), Gaps = 85/340 (25%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRLLVADKKE------SHYS 142
R++ALK Y GQR+ G+ ++GN P T+E E++KAL K RL+ E + S
Sbjct: 90 RFIALKFAYLGQRYNGYEHANGNTTPLPTIEEELWKALRKARLIFPQAVEADGVSSTEPS 149
Query: 143 RCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
TD S V ++ S + T ++ + I DE+ Y+ +LNRVLP+D
Sbjct: 150 TATSTDAYNSGVENLLGGLSLSGSENSETEDSW-------DDIADELPYITILNRVLPED 202
Query: 203 IRVIGWSP-APTDFSARFSCISREYKYFF------------------------------- 230
IRV+ W P P DF ARFSC R Y+YFF
Sbjct: 203 IRVLAWCPNPPPDFDARFSCRERRYRYFFTQPAFSPTPGPLGFLKRGREENCLGEGSGAP 262
Query: 231 ----WREN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHV------------- 271
+RE L++ AM K +G HDFRNFCK+D + + N+ RH+
Sbjct: 263 HNEQFREGWLDIEAMRKGAKYLIGSHDFRNFCKVDPSKQITNHVRHIYHADIELLDPKTK 322
Query: 272 ----------TSFEISPCYISFEGN--------QLCAIKIRGSAFLWHQVRCMVAVLFMI 313
T+F+ + G+ ++ +I I GSAFLWHQVR + A+LF++
Sbjct: 323 PLSYLRQHEFTTFDTENDKAAANGSIGDPSSNLKVYSITIHGSAFLWHQVRHLAAILFLV 382
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
GQGLE+ +I LLD PR+P Y +A + PLVL C F
Sbjct: 383 GQGLEAPSIIPELLDVEKHPRRPTYEIASDTPLVLWDCIF 422
>gi|49899182|gb|AAH75766.1| Zgc:56653 protein [Danio rerio]
Length = 386
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 146/250 (58%), Gaps = 33/250 (13%)
Query: 17 EALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKK 76
E L+ RVK LE + +L ++L R E EE +T G + K+
Sbjct: 4 EVLRVRVKALEEELERLKAQL---RAE----------------TEEKSQTPESGSRQKKQ 44
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK 136
+V++ + H +R+VAL++ Y G ++ GFA N + TVE+ +F+AL KT+L + D+
Sbjct: 45 RVEKPFD--FSAHPRRHVALRLAYLGWQYQGFAVQENTDNTVEARLFEALLKTKL-IQDR 101
Query: 137 KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE------QIEDEID 190
+ S Y RCGRTDKGVS+ QVI+I LRS +G TV + DE+
Sbjct: 102 QTSCYHRCGRTDKGVSAFSQVISIDLRST-----QYGGGLGVTVPADVDVKGKTSADELP 156
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
YV++LNRVLP+DIR++ W+P + FSARF C SR Y+Y+F R +L+L M A K++ G
Sbjct: 157 YVKILNRVLPQDIRILQWAPVESGFSARFDCQSRTYRYYFPRGDLDLELMAEAAKRYEGT 216
Query: 251 HDFRNFCKMD 260
HDFRN CKMD
Sbjct: 217 HDFRNLCKMD 226
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIF 386
+D PRKPQY+MA + PL L C F+G+ + + +H+ N + +Q A+
Sbjct: 225 MDVEKNPRKPQYSMAVDYPLALYDCHFEGVNWRNETEE----EIHILNTFHQHWVQNAVK 280
Query: 387 HEALLNCL 394
+ LL +
Sbjct: 281 TQILLGMI 288
>gi|342181526|emb|CCC91005.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 446
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 152/290 (52%), Gaps = 27/290 (9%)
Query: 80 EKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKES 139
+K + ++ R +AL++ Y G + G TVE+ + AL + L V
Sbjct: 31 QKRTFAFENYPSRKIALRLAYHGHVYNGLVRQAETPNTVEAFVVDALRRLNL-VDPSGPK 89
Query: 140 HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVL 199
SRCGRTDKGVS++G ++ RS+ + N + +DY +LN VL
Sbjct: 90 DLSRCGRTDKGVSALGNALSFTARSSSWPADENQ------------KQPLDYCAMLNNVL 137
Query: 200 PKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
P IR++GW+ F ARFSC+ R Y+Y+F + LNL AM A G H+FR+FCK
Sbjct: 138 PPTIRIVGWAYVEDCFDARFSCVGRTYRYYFCHQGLNLEAMREAVGYLKGVHNFRSFCKT 197
Query: 260 DAANVHNYKRHV-----TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
D NV NY+RHV + ++ P +S+ +I ++FL++Q+RC + VLF++G
Sbjct: 198 DVVNVSNYERHVRHASIVTSDLLPDVVSY-------FEIEANSFLYNQIRCTMEVLFLVG 250
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
+ LE DV+ LL+ KP Y + PLVL C F+ +++ S A
Sbjct: 251 RCLEEPDVVLKLLERGDC--KPVYPLVDPTPLVLWECHFENVQWNISRRA 298
>gi|268529206|ref|XP_002629729.1| C. briggsae CBR-TAG-124 protein [Caenorhabditis briggsae]
Length = 401
Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/288 (33%), Positives = 151/288 (52%), Gaps = 12/288 (4%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD 135
K+ K+ + H +R +A++ Y G G N + TVE + +AL KT + + D
Sbjct: 14 KEAKKPRIFDFSAHPRRKIAIQFFYLGWEHDGLVQQPNTQNTVEHHLMEALIKTHI-IED 72
Query: 136 KKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTN---NASMGETVQE--EQIEDEID 190
+ +SRCGRTDKGVS+ Q A RS + + N + S E V+ + ++E+
Sbjct: 73 SIKCDFSRCGRTDKGVSAFKQTAAFLARSTCPD-HPNVFWSDSTAEDVKNSYKSKDEELP 131
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
Y+++LN VLPK IRV W+P F+ARF C R YKY F + L+L M A K +GE
Sbjct: 132 YIKMLNGVLPKTIRVFAWAPVAPTFNARFDCNRRTYKYSFPKAGLDLEKMREAAKLLIGE 191
Query: 251 HDFRNFCKMDAANV---HNYKRHVTSFEISPCYISFEGN--QLCAIKIRGSAFLWHQVRC 305
HD+ NFC++D + +Y R + + E + + + + GS FLWH +R
Sbjct: 192 HDYSNFCQIDMNKMRLEQSYTRKIYDVTVEQVSTHSENDIYSMVELTVSGSGFLWHMIRY 251
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+V VL + +G E ++ LLD + P +P Y ++ + PL L C +
Sbjct: 252 IVTVLQEVARGNEQPSLVSDLLDLSKYPSRPHYTLSSDTPLCLFDCGY 299
>gi|409043129|gb|EKM52612.1| hypothetical protein PHACADRAFT_211852 [Phanerochaete carnosa
HHB-10118-sp]
Length = 548
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 163/340 (47%), Gaps = 75/340 (22%)
Query: 89 HFKRYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLL--VADKKESHYSRC 144
H R +ALK Y G F G F D PTVE +++AL TRL+ + + +C
Sbjct: 74 HPTRKIALKFSYDGTFFNGLEFQRDPTPLPTVEEVLWRALLHTRLVDPAGGMEGVGWEKC 133
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASM------------GETVQEEQIEDE---- 188
GRTD GVS+ GQV++ +RS ++ T + + G T + ++DE
Sbjct: 134 GRTDCGVSAAGQVVSFRIRSALRGLQTPASIISSSQAPSSEVREGTTAEAPSLDDEHEST 193
Query: 189 ------------------------------------IDYVRVLNRVLPKDIRVIGWSPAP 212
+ YV LN +LP IRV+ WSP
Sbjct: 194 GLENVFGALSTWDEPPTNTVLPPANNIRMSSDNNDELKYVSSLNNILPPSIRVLAWSPVS 253
Query: 213 TDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHV 271
DFSAR++C R YKYFF LN AM ++ VGEHDFRN K+D A + ++R +
Sbjct: 254 EDFSARYNCRYRHYKYFFLSRGLNTKAMCDGAERLVGEHDFRNLHKLDPAKQLTTFRRRI 313
Query: 272 TSFEISPCYISFEG--NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
EI+P I+ G +Q+ + G+AFL++QVR ++A+LF+IG GLE ++ +LL+T
Sbjct: 314 LRAEINPVDITDRGSPSQMYVFDLVGTAFLYNQVRHIMAILFLIGAGLEEPSIMTTLLNT 373
Query: 330 N----------GIP------RKPQYNMAPEIPLVLQSCDF 353
+ G P KP Y MA +PLVL F
Sbjct: 374 DPDNPYPSYRLGEPVPSVVTTKPIYQMADALPLVLWDTGF 413
>gi|302676700|ref|XP_003028033.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
gi|300101721|gb|EFI93130.1| hypothetical protein SCHCODRAFT_60363 [Schizophyllum commune H4-8]
Length = 455
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 149/271 (54%), Gaps = 21/271 (7%)
Query: 91 KRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVADKKES----HYSRC 144
+R +ALK Y G F G A D PTVE ++F AL + RL+ D K + RC
Sbjct: 78 RRKIALKFCYGGWDFGGLAIQKDRTPLPTVEGKLFGALVRARLV--DPKGGLEGCGWERC 135
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
GRTD+GVS+ GQVI++++RS + S E +E ++ ++NR LP I+
Sbjct: 136 GRTDRGVSAAGQVISLWVRSAL--------SQEELTPTATPTEEHPFIYMINRHLPDTIK 187
Query: 205 VIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-N 263
++ WSP FS+R+SC R YKYFF L+++AM +A G HDFRN CK+D
Sbjct: 188 ILAWSPVDPSFSSRYSCTWRHYKYFFSPVGLDVAAMRAACAYLPGTHDFRNLCKIDPTKQ 247
Query: 264 VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVI 323
+ ++R + ISP S G + ++GS+FL+H VR ++ VL IG LE ++
Sbjct: 248 LDQFRRDILHASISPVDASNPGG-MHVFDLKGSSFLYHMVRNIMGVLLSIGARLEPPTLL 306
Query: 324 ESLLDTNGIPR-KPQYNMAPEIPLVLQSCDF 353
+L+ N P +P+Y MA +PL L C +
Sbjct: 307 PALM--NVAPGCRPEYMMADALPLTLWDCGY 335
>gi|341882334|gb|EGT38269.1| hypothetical protein CAEBREN_00927 [Caenorhabditis brenneri]
Length = 413
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 153/295 (51%), Gaps = 24/295 (8%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA 134
++K K+ + H KR +A + Y G G + TVE + AL KT++ +
Sbjct: 25 QQKAKKPKILDFSAHPKRKIAFQFYYLGWEHDGLVQQLDTANTVEKHLMDALLKTKM-IE 83
Query: 135 DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE-------D 187
+ +SRCGRTDKGVS+ Q A+ +RS C + + E ++ +
Sbjct: 84 SWENCEFSRCGRTDKGVSAFKQTAAVVVRST---CPQDPDVFWDESTPEDVKNNYKSKPE 140
Query: 188 EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKF 247
E+ YV++LN +LPK IRV W+P +F+ARF C R YKY F + +L+L M A
Sbjct: 141 ELPYVKMLNGLLPKTIRVFAWAPVKREFNARFDCNRRTYKYSFAKADLDLEKMREAASLL 200
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTS-----FEISPCYIS-FEGNQLCA---IKIRGSAF 298
+GEHD+ NFC+MD N KR + +E+ +S GN + + + + GS F
Sbjct: 201 IGEHDYINFCQMDL----NEKRLTQATVRKIYEVKVEQVSTHPGNDIYSMVELTVSGSGF 256
Query: 299 LWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
LWH +R +V VL IG+G E ++ LLDT P +P Y ++ + PL L C +
Sbjct: 257 LWHMIRYIVTVLQEIGRGNEQPTLVSELLDTQKYPGRPHYTLSSDTPLCLFDCGY 311
>gi|198426359|ref|XP_002130657.1| PREDICTED: similar to tRNA pseudouridine synthase 3 (tRNA-uridine
isomerase 3) (tRNA pseudouridylate synthase 3) [Ciona
intestinalis]
Length = 557
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 116/341 (34%), Positives = 171/341 (50%), Gaps = 59/341 (17%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R +ALKV Y G + G + N++ T+E + +AL + RL+ AD + ++SRCGRTDK V
Sbjct: 101 RRIALKVAYLGWDYEGLQENENLDDTIERILREALRRVRLVPAD-RSIYFSRCGRTDKEV 159
Query: 152 SSVGQVIAIYLRS-------------------------------NIKECNT--------- 171
S+ QVI + +RS + K N
Sbjct: 160 SAFSQVIVVKVRSLLASGPGVITANVAYPAEEENQEEGEEEDSHDPKHSNQNFLPEVSVP 219
Query: 172 -NNASMGETVQEEQ-------------IED-EIDYVRVLNRVLPKDIRVIGWSPAPT-DF 215
NN + T EQ IE+ E ++ +LNRVLP +I+V+ W+P +F
Sbjct: 220 ENNGDVEMTDGAEQSKTPEINDENPIKIEENEYEFTGMLNRVLPAEIKVLAWAPVENEEF 279
Query: 216 SARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFE 275
SAR C+ REY+Y+F R N +++AM A K F G HDFRNF K++ N NY R + FE
Sbjct: 280 SARKHCLGREYRYYFHRGNADITAMNEAAKLFCGLHDFRNFGKVNVVNCVNYVRRINHFE 339
Query: 276 ISPCYISFEGN--QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
IS C ++C +I GS F++HQVR M+AVL++IG GLE ++I L + P
Sbjct: 340 ISFCDEEKGAGPYRMCFARIIGSGFIYHQVRSMMAVLYLIGVGLEKPEIITELFNIEKHP 399
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRN 374
+KP + + LVL + + LK+ + H +N
Sbjct: 400 KKPWFGLVKPHALVLFNSIYPDLKWRIVNQDAQRVLEHFQN 440
>gi|219117902|ref|XP_002179737.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408790|gb|EEC48723.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 216
Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 139/239 (58%), Gaps = 25/239 (10%)
Query: 117 TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASM 176
+VE +F+AL +RL V + S YSRCGRTDKGVS+ GQ LR
Sbjct: 1 SVEKALFRALRTSRL-VESRASSGYSRCGRTDKGVSAAGQQTDPPLR------------- 46
Query: 177 GETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN-L 235
+++ E Y ++LN +LP DIRV+GW P DFSARFS SR Y+YFF R L
Sbjct: 47 -----QQRALREHAYDKILNNLLPDDIRVLGWIPVSDDFSARFSATSRTYRYFFRRRRTL 101
Query: 236 NLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQ-LCAIKIR 294
++ AM + G HDFRNFCKMD V+N++R + EI ++ E + + I
Sbjct: 102 DVEAMRQGLHRMQGTHDFRNFCKMDVEKVYNFERRIDKAEI----VNMERDTGVSYFLIV 157
Query: 295 GSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G AFLWHQ+R M ++LF IGQGLE+ +++ ++LD P KP Y +A E PLVL C +
Sbjct: 158 GQAFLWHQIRYMASILFAIGQGLETPELVTAMLDIAQNPGKPAYPLADEQPLVLHDCGY 216
>gi|341879449|gb|EGT35384.1| hypothetical protein CAEBREN_20868 [Caenorhabditis brenneri]
Length = 413
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 153/295 (51%), Gaps = 24/295 (8%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA 134
++K K+ + H KR +A + Y G G + TVE + AL KT++ +
Sbjct: 25 QQKAKKPKILDFSAHPKRKIAFQFYYLGWEHDGLVQQLDTANTVEKHLMDALLKTKM-IE 83
Query: 135 DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE-------D 187
+ +SRCGRTDKGVS+ Q A+ +RS C + + E ++ +
Sbjct: 84 SWENCEFSRCGRTDKGVSAFKQTAAVVVRST---CPQDPDVFWDESTPEDVKNNYKSKPE 140
Query: 188 EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKF 247
E+ YV++LN +LPK IRV W+P +F+ARF C R YKY F + +L+L M A
Sbjct: 141 ELPYVKMLNGLLPKTIRVFAWAPVKREFNARFDCNRRTYKYSFAKADLDLEKMREAASLL 200
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTS-----FEISPCYIS-FEGNQLCA---IKIRGSAF 298
+GEHD+ NFC+MD N KR + +E+ +S GN + + + + GS F
Sbjct: 201 IGEHDYINFCQMDL----NEKRLTQTTVRKIYEVKVEQVSTHPGNDIYSMVELTVSGSGF 256
Query: 299 LWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
LWH +R +V VL IG+G E ++ LLDT P +P Y ++ + PL L C +
Sbjct: 257 LWHMIRYIVTVLQEIGRGNEHPTLVSELLDTQKYPGRPHYTLSSDTPLCLFDCGY 311
>gi|392563519|gb|EIW56698.1| tRNA pseudouridine synthase [Trametes versicolor FP-101664 SS1]
Length = 503
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 171/347 (49%), Gaps = 72/347 (20%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLL 132
+ V++ + + +R +ALK Y G + G F D + PTVE +F A+ T+L+
Sbjct: 28 PEPVRQAKTLDFTAYPRRKIALKFTYNGIHYGGMEFQRDPAL-PTVEGVLFDAMVHTKLV 86
Query: 133 VADKKES----HYSRCGRTDKGVSSVGQVIAIYLRS------------------------ 164
D++ + RCGRTDKGVS+ GQV+++++RS
Sbjct: 87 --DREGGLDGCGWQRCGRTDKGVSAGGQVVSLWVRSSSNGKTIASGSSLQSVEQPTLHTD 144
Query: 165 -------------------NIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
+ E TN + + E+ +D YV LN +LP IR+
Sbjct: 145 PEDLPEDGPGLEGDFGLMGDFDEPPTNGSMTTKPAPEDAEDDNTAYVYKLNHILPPTIRI 204
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NV 264
+ WSP DFSAR SC R YKYFF L+L+AM A + +GEHDFRN CK+DA+ +
Sbjct: 205 LAWSPVADDFSARHSCRWRHYKYFFSPHGLDLAAMSDAASRLLGEHDFRNLCKVDASKQL 264
Query: 265 HNYKRHVTSFEISPC-YISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVI 323
+ R + + P + EG + +RG+AFL++ VR ++A+L ++G GLE V+
Sbjct: 265 TVFTRRILHASVDPVDPANPEG--MHVFNLRGNAFLYNMVRHLMAILLLVGTGLEHPSVM 322
Query: 324 ESLLDTN----------GIPR------KPQYNMAPEIPLVLQSCDFD 354
+LL+ + G P KP+Y +A +PL+L +C +D
Sbjct: 323 TALLNADPSRPLPPFREGEPAPPLVTGKPEYIIADPLPLMLWACGYD 369
>gi|393219515|gb|EJD05002.1| tRNA pseudouridine synthase [Fomitiporia mediterranea MF3/22]
Length = 523
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 116/386 (30%), Positives = 185/386 (47%), Gaps = 72/386 (18%)
Query: 91 KRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLL--VADKKESHYSRCGR 146
+R +ALK Y G + G +D PTVE ++ AL +L+ A + + RCGR
Sbjct: 55 RRKIALKFCYSGWEYNGLVIQNDKTRLPTVEGTLYNALASCKLIDGAAGPQACGWERCGR 114
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIED----------------- 187
TD GVSS QV+++++RSNI + + + +IED
Sbjct: 115 TDVGVSSAAQVVSLWVRSNIGQADEQTGPPSNQTESSSIRIEDGQENPDSDFLPDPESEL 174
Query: 188 ------------------------EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCIS 223
E+ Y+ +LNR+LP IR+I WSP + FS+RF+C
Sbjct: 175 PQLDASEVESAPLPAIHELVERRQELRYLTILNRILPPSIRIIAWSPVSSSFSSRFNCKH 234
Query: 224 REYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYI- 281
R YKYFF E L++ AM A + VG+HDFRN CK+D + + ++R+++ +ISP +
Sbjct: 235 RHYKYFFSPEGLSIDAMRDAAARLVGDHDFRNLCKLDPSKQLTVFRRNISRADISPASVL 294
Query: 282 -----SFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG----- 331
+ + + + + G+AFL++QVR ++A+L ++G GLE V+ SLL+ +
Sbjct: 295 ANDDLASDRSHMYVFDLIGNAFLYNQVRHIMAILLLVGAGLEPPCVMTSLLNADPERPEP 354
Query: 332 -----------IPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQ 380
+ KP+Y MA +PLVL C +D D+ + H +YQ
Sbjct: 355 PFLESDPPPELVTCKPEYQMADPLPLVLWECAYDDKDVKWQTDSPE--KKHSAAANNLYQ 412
Query: 381 LQAAIFHEALLNCLPLANGLEIGSSL 406
AI +L++ A L+ S+
Sbjct: 413 ELHAIHTRSLIHSALDATFLKAASAF 438
>gi|308161029|gb|EFO63491.1| Pseudouridylate synthase, putative [Giardia lamblia P15]
Length = 515
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 116/365 (31%), Positives = 170/365 (46%), Gaps = 56/365 (15%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL--VADKKESHYSRCGRTDK 149
R++A++V Y G + G A N E T+E + AL L+ A + H+ R GRTD+
Sbjct: 81 RHIAIQVCYDGTEYAGLAQQPNKEYTIEELLLNALRDAALIPQYATASDVHFERSGRTDR 140
Query: 150 GVSSVGQVIAIYLRSNIK------------------------ECNTNNASMGETVQEEQ- 184
GVS+ GQV + Y R+N K N+ G+ V E+
Sbjct: 141 GVSAAGQVFSFYARTNNKAMTPQSIPVPDPRFYRDRRDGLTPPAKPNDNVDGDLVNSEKE 200
Query: 185 -------IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR-ENLN 236
E EIDYV +N LP+ IRV+GW+P +FSAR S SR Y Y F + +LN
Sbjct: 201 PELKQVPQEQEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRHYIYTFGQIGSLN 260
Query: 237 LSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEG----------- 285
+ M A K VG HDFRN CK ++ ++R + S CY+ +G
Sbjct: 261 IRRMAEACTKLVGFHDFRNICKPSLDSIKTFERVIFS-----CYLEIDGQPYECENDRMV 315
Query: 286 ---NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAP 342
N ++ + GSAFL+HQ+RC+ ++L IG LE +I LL+ P KP Y +AP
Sbjct: 316 IKENSSLSLVVCGSAFLYHQIRCIASLLLHIGAELEPPSLISDLLNIENFPGKPDYPIAP 375
Query: 343 EIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNE--CQVYQLQAAIFHEALLNCLPLANGL 400
L+ + ++ + +G R +N Q L A + A LN L A
Sbjct: 376 GELLLFEKAEYTSTRLPKFYLSGPSYRFLTKNIRFLQSKALARARVYGAALNLLSEARTC 435
Query: 401 EIGSS 405
++ S+
Sbjct: 436 QVVSN 440
>gi|443900339|dbj|GAC77665.1| pseudouridylate synthase [Pseudozyma antarctica T-34]
Length = 654
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 159/303 (52%), Gaps = 66/303 (21%)
Query: 92 RYVALKVMYFGQRFYGFAS-------DGNMEPTVESEIFKALEKTRLL--VADKKESHYS 142
R +AL+ Y G + G A+ G+ PTVE+ ++ A+ RL+ + +S
Sbjct: 117 RKIALRFSYDGAGYSGLAAQNTSVPGSGSSLPTVEAVLWDAMCTARLVDPALGMDGAGFS 176
Query: 143 RCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMG-------------------ETVQEE 183
RCGRTD+GVS+ GQV+A+++RS K+ N A + E +
Sbjct: 177 RCGRTDRGVSAAGQVVALWVRS--KKLNHWTARLEHQAKFSSDPVPLSEDHEALEAKRNA 234
Query: 184 QIED-EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF------------ 230
++ED E+ YV++LNR+LP IR+ WSP DFS+RF C+ R YKYFF
Sbjct: 235 RLEDTELPYVQILNRILPPTIRIHAWSPVRADFSSRFDCVYRHYKYFFPAGPPSLLLAQS 294
Query: 231 ----------WRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEIS-- 277
L++ M A + VGEHDFRN CK+DA+ + NY+R + I
Sbjct: 295 SCSSSAIAEAASTRLDIGRMRDAAARLVGEHDFRNLCKIDASKQITNYRRRIDGVSIDRV 354
Query: 278 -------PCYI--SFEGN-QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLL 327
P I + EG+ ++ + +RG+AFL+HQVR ++A+LF++G LE V+E L+
Sbjct: 355 SSHWPTQPSNINDTPEGDEEMYVLNLRGTAFLYHQVRNIMAILFLVGARLEEPSVVEELM 414
Query: 328 DTN 330
+T+
Sbjct: 415 NTH 417
>gi|253744705|gb|EET00865.1| Pseudouridylate synthase, putative [Giardia intestinalis ATCC
50581]
Length = 507
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 167/357 (46%), Gaps = 50/357 (14%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV--ADKKESHYSRCGRTDK 149
R++A++V Y G + G A N E T+E + AL L+ A + H+ R GRTD+
Sbjct: 70 RHIAIQVCYDGTEYAGLAQQSNKEYTIEELLLNALRDAALIPQHATANDIHFERSGRTDR 129
Query: 150 GVSSVGQVIAIYLRSNIKECNT----------------------------------NNAS 175
GV + GQV + Y R+N KE + S
Sbjct: 130 GVIAAGQVFSFYARTNNKEITPRPIPAPDPRFYRDRRDGMAPPTKPNDNFDETRGGDTVS 189
Query: 176 MGETVQEEQI--EDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR- 232
+G+ + +Q+ E EIDYV +N LP+ IRV+GW+P +FSAR S SR Y Y F +
Sbjct: 190 VGKEPELKQVPQEVEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRRYIYTFGQV 249
Query: 233 ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS--FEISPCYISFEGNQLC- 289
+LN+ M A VG HDFRN CK NV ++R + S EI EG++
Sbjct: 250 GSLNIQRMAEACTTLVGFHDFRNICKPSLDNVKTFERVIFSCQLEIDGQPYECEGSRAAV 309
Query: 290 ------AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPE 343
++ + GSAFL+HQVRC+ ++L IG LE +I LLD P KP Y +AP
Sbjct: 310 SEDSSLSLVVCGSAFLYHQVRCIASLLLHIGAELEPPSIISDLLDVTRFPGKPDYPIAPG 369
Query: 344 IPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNE--CQVYQLQAAIFHEALLNCLPLAN 398
L+ + ++ + +G + +N Q L A + A L L AN
Sbjct: 370 ELLIFEKAEYTPTRLPKLYLSGPSYQFLTKNLRFLQSKALAKARMYSAALKLLSEAN 426
>gi|159118829|ref|XP_001709633.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803]
gi|157437750|gb|EDO81959.1| Pseudouridylate synthase, putative [Giardia lamblia ATCC 50803]
Length = 531
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 158/338 (46%), Gaps = 60/338 (17%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV--ADKKESHYSRCGRTDK 149
R++A++V Y G + G A N E T+E + AL L+ A+ + H+ R GRTD+
Sbjct: 91 RHIAIQVCYDGTEYAGLAQQPNREYTIEELLLNALRGAALIPQHAEASDVHFERSGRTDR 150
Query: 150 GVSSVGQVIAIYLRSNIK------------------------------ECNTNNASMGET 179
GVS+ GQV + Y+R+N K + + G+
Sbjct: 151 GVSAAGQVFSFYVRTNNKGMGPQPIPAPDPRFYRDRRDGLTPPAKPSDSATDDRGADGDL 210
Query: 180 VQEEQ--------IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFW 231
V E+ E EIDYV +N LP+ IRV+GW+P +FSAR S SR Y Y F
Sbjct: 211 VNAEKEPELKQVPQEQEIDYVSAINMRLPETIRVLGWAPVDENFSARHSTSSRRYVYMFG 270
Query: 232 R-ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEG----- 285
+LN+ M A K VG HDFRN CK ++ ++R + S C++ +G
Sbjct: 271 EVGSLNIRRMAEACTKLVGFHDFRNICKPSLDSIKTFERVIFS-----CFLEIDGQPYDC 325
Query: 286 ---------NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKP 336
N ++ + GSAFL+HQ+RC+ ++L IG LE +I LL+ P KP
Sbjct: 326 ENDRMAMKENSTLSLVVCGSAFLYHQIRCIASLLLHIGAELEPPSLISDLLNVEQFPGKP 385
Query: 337 QYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRN 374
Y +AP L+ + ++ + +G R +N
Sbjct: 386 DYPIAPGELLLFERAEYTSTRLPKFYLSGPSYRFLTKN 423
>gi|313229675|emb|CBY18490.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 159/311 (51%), Gaps = 21/311 (6%)
Query: 91 KRYVALKVMYFGQRFYGFASDG--NMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
KR +AL+ Y G ++ G + T+E IF A+ +T++ V D + Y GRTD
Sbjct: 64 KRKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDAILRTKV-VDDIGTADYIAGGRTD 122
Query: 149 KGVSSVGQVIAIYLRSNIKECNTN-NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
KGV +V VI++++ S + E N N ++GE ++V ++NR LP DI +
Sbjct: 123 KGVHAVNNVISLFVNSRLSEDEINENVTVGER----------NFVAIINRQLPDDIWITS 172
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNY 267
W+P DFSARFSC SR Y Y F L++ M+ A +GEHDFRNF + N
Sbjct: 173 WAPISFDFSARFSCKSRHYNYIFDSSGLDVELMKEAASYLIGEHDFRNFSQAQLER-QNT 231
Query: 268 KRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLL 327
R + +I + +C I+ S FL+HQ+R +A+L ++G LE +++ LL
Sbjct: 232 VRVCFAADIKQVP---NMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELL 288
Query: 328 DTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAI-F 386
D PR+P Y A LVL C+++ +++ D L + N ++Y ++ +
Sbjct: 289 DVEKYPRRPSYKYANPDGLVLIDCEYENVEWIDGEDQSRFLASKIEN--KMYNMKIGLSV 346
Query: 387 HEALLNCLPLA 397
HE + L +
Sbjct: 347 HELIKKTLDIG 357
>gi|351712567|gb|EHB15486.1| Bone morphogenetic protein receptor type-2 [Heterocephalus glaber]
Length = 1257
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 155/266 (58%), Gaps = 36/266 (13%)
Query: 13 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCK 72
++Q+E L RV+ELE + ++++ + + ++D ++EN
Sbjct: 8 RNQIEKLLKRVQELEQ------------KVQRLKKEQSNNIKDPD--IKEN--------S 45
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
+G K + + H +R+VAL R GFAS N + T+E ++F+ L KTRL
Sbjct: 46 SGSGKAQRAFD--FSAHSQRHVAL-------RIAGFASQENTDNTIEEKLFETLTKTRL- 95
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDY 191
+ ++ S+Y CGRTDKGVS+ GQVI++ LRS K ++ + ++ + V ++ EI Y
Sbjct: 96 IESRQTSNYHWCGRTDKGVSAFGQVISLDLRSQFPKGKDSKDLNLKDEVSDDA--KEIRY 153
Query: 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251
+L+RVLP DIRV+ W+P + FSARFSC+ R Y YFF +L++ M A +K+VG H
Sbjct: 154 THILSRVLPPDIRVLAWAPVESSFSARFSCLERTYCYFFPCADLDIVRMNYAAQKYVGTH 213
Query: 252 DFRNFCKMDAAN-VHNYKRHVTSFEI 276
DFRN CKMD AN V N++R + S ++
Sbjct: 214 DFRNLCKMDVANGVINFQRTIQSAQV 239
>gi|302677288|ref|XP_003028327.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
gi|300102015|gb|EFI93424.1| hypothetical protein SCHCODRAFT_42694 [Schizophyllum commune H4-8]
Length = 296
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 146/271 (53%), Gaps = 28/271 (10%)
Query: 91 KRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVADKKES----HYSRC 144
+R +ALK Y G + G A D PTVE ++F AL + RL+ D K + RC
Sbjct: 45 RRKIALKFCYGGWDYGGLAIQKDRTPLPTVEGKLFGALVRARLV--DPKGGLEGCGWERC 102
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
GRTD+GVS+ GQVI++++RS + QEE + Y+ +NR LP I+
Sbjct: 103 GRTDRGVSAAGQVISLWVRSALS-------------QEELLPHPFTYM--INRHLPDPIK 147
Query: 205 VIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-N 263
++ WSP FS+R+SC R YKYFF L++ AM +A G H+FRN CK+D
Sbjct: 148 ILAWSPVDLSFSSRYSCTWRHYKYFFPPVGLDIPAMRAACAYLPGTHEFRNLCKIDPTKQ 207
Query: 264 VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVI 323
+ ++R + IS S G + ++GS+FL+H VR ++ VL IG LE ++
Sbjct: 208 LDQFRRDILHASISHVDASNPGG-MHVFDLKGSSFLYHMVRNIMGVLLSIGARLEPPTLL 266
Query: 324 ESLLDTNGIPR-KPQYNMAPEIPLVLQSCDF 353
SL+ N P +P+Y MA +PL L C +
Sbjct: 267 PSLM--NVAPGCRPEYMMADALPLTLWDCGY 295
>gi|170583043|ref|XP_001896407.1| tRNA pseudouridine synthase family protein [Brugia malayi]
gi|158596407|gb|EDP34752.1| tRNA pseudouridine synthase family protein [Brugia malayi]
Length = 234
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 126/220 (57%), Gaps = 5/220 (2%)
Query: 70 GCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKT 129
G + KKVK+K + H KR +AL MYFG + G + TVE E+ KAL KT
Sbjct: 8 GSLSNNKKVKKKREFDFSQHPKRRIALMFMYFGWEYNGLVEQREIARTVEEEMRKALIKT 67
Query: 130 RLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC-NTNNASMGETVQEEQIEDE 188
+L V + + ++R GRTDKGVS+ QV ++ +RSN E ++ E ++ E
Sbjct: 68 KL-VENWENCSWNRSGRTDKGVSAFKQVASVIVRSNEPEGEGVFWPNVAHASSETAMKGE 126
Query: 189 IDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFV 248
+ YV++LN LP +IRV+ W+P P +FSAR++C R Y Y F R N N+ AM A + V
Sbjct: 127 LQYVKMLNSTLPTNIRVLAWAPVPRNFSARYNCTQRTYTYAFPRTNFNIEAMRQACQFLV 186
Query: 249 GEHDFRNFCKMDAANVH---NYKRHVTSFEISPCYISFEG 285
GEHDFRNFC++D NY R +T +IS SF G
Sbjct: 187 GEHDFRNFCRIDMNKKRVEMNYIRTITYADISFISYSFNG 226
>gi|449017039|dbj|BAM80441.1| pseudouridine synthase 3 [Cyanidioschyzon merolae strain 10D]
Length = 467
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 152/316 (48%), Gaps = 69/316 (21%)
Query: 92 RYVALKVMYFGQRF-YGFAS-------------DGNMEPTVESEIFKALEKT-------- 129
R +ALK+ Y G F GFA+ G +VES +F ALEK
Sbjct: 50 RKIALKLAYQGWSFPSGFAAQPADFSTSSAGKLSGIAFKSVESALFYALEKVNLVPNLHW 109
Query: 130 ---------------RLLVADK-------KESHYSRCGRTDKGVSSVGQVIAIYLRSNIK 167
R L +K K Y+R GRTDKGVS++GQV+++ +R
Sbjct: 110 FVGSDGTCATGVSPNRPLSREKFGETWAVKGWQYARGGRTDKGVSAIGQVVSLLVRCPPP 169
Query: 168 ECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYK 227
TN DY+ +LNR LP +RV W+P DFSARFS SR YK
Sbjct: 170 GTGTNF---------------YDYIHLLNRELPASVRVYAWAPVADDFSARFSAYSRTYK 214
Query: 228 YFFWR--ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVT---SFEISP--CY 280
YF + + +M +A KK VG HDF NFCK DA V + E++ Y
Sbjct: 215 YFVPNVFSDEGICSMVAAAKKMVGRHDFANFCKFDAETTKGNTERVILQCTVELAKDEFY 274
Query: 281 ISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPR---KPQ 337
+ + I G AFL+HQVR M+A+L IG+G E+I +++SLL +G PR +PQ
Sbjct: 275 RALFPRGILEFTIEGQAFLYHQVRFMIALLLEIGRGTENISLVDSLLGLDGSPRIDPRPQ 334
Query: 338 YNMAPEIPLVLQSCDF 353
Y APE PLVL + +
Sbjct: 335 YVQAPEHPLVLWNIHY 350
>gi|343425503|emb|CBQ69038.1| related to DEG1-pseudouridine synthase [Sporisorium reilianum SRZ2]
Length = 652
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 157/313 (50%), Gaps = 75/313 (23%)
Query: 92 RYVALKVMYFGQRFYGFASD--------GNMEPTVESEIFKALEKTRLL--VADKKESHY 141
R +AL+ Y G + G A+ G+ PTVE ++ AL RL+ + +
Sbjct: 82 RKIALRFSYDGAGYSGLAAQNAVAGGGAGSTLPTVEGVLWDALCTARLVDPALGMDGAGF 141
Query: 142 SRCGRTDKGVSSVGQVIAIYLRSN--------IKECNTNNASMGETVQEEQ--------- 184
SRCGRTD+GVS+ GQV+A+++RS +++ + S+ EE+
Sbjct: 142 SRCGRTDRGVSAAGQVVALWVRSKKLNQWSERLEQQEQFSPSLAAKPSEEEWQALQAKRE 201
Query: 185 --IED-EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF----------- 230
+ED E+ YV +LNR+LP IR+ WSP ++FS+RF C R YKYFF
Sbjct: 202 AKLEDTELPYVSILNRILPPSIRIQAWSPVRSNFSSRFDCTYRHYKYFFPSGPPSIFYPP 261
Query: 231 ------------------WRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHV 271
L++ M A ++ +GEHDFRN CK+DA+ + NY+R +
Sbjct: 262 ASSTSTASASAGMPSQDAGATRLDIGRMRDAARRLLGEHDFRNLCKVDASKQITNYRRRI 321
Query: 272 ---------TSFEISPCYISFEG------NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
T + + C I+ + + + +RG+AFL+HQVR ++A+LF++G
Sbjct: 322 DGVSIDRVSTHWPSTHCRITDDAVDGKDTEHMYVLNLRGTAFLYHQVRNIMAILFLVGAR 381
Query: 317 LESIDVIESLLDT 329
LE V+E L++T
Sbjct: 382 LEHPSVVEELMNT 394
>gi|378727214|gb|EHY53673.1| hypothetical protein HMPREF1120_01858 [Exophiala dermatitidis
NIH/UT8656]
Length = 713
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 130/443 (29%), Positives = 173/443 (39%), Gaps = 176/443 (39%)
Query: 87 NHHFKRYVALKVMYFGQRFYGFA-SDGNMEP--TVESEIFKALEKTRL------------ 131
+ + R++ALK Y G R+ G+ ++GN+ P T+E ++KAL K RL
Sbjct: 110 SKYTTRHIALKFAYLGGRYNGYEHANGNVAPLPTIEEVLWKALCKARLISPPVAEGADQS 169
Query: 132 ------------LVADKKES------------------HYSRCGRTDKGVSSVGQVIAIY 161
L D K YS+CGRTD+GVS+ GQV+ I
Sbjct: 170 TDVVWEKHRRLLLYTDGKSGGKDEAKGKIRLDVNWDGCQYSKCGRTDRGVSAFGQVVGIR 229
Query: 162 LRSNIK-------------------------------ECNTNNASMG-------ETVQEE 183
+RSN E + +A M E ++ E
Sbjct: 230 VRSNRPIEKGKPRRQESQSKSSTSTATTNTVPPDGQSELDDQDALMMPMPSIDVEDLEAE 289
Query: 184 Q-------IEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFSARFSCISREYKYFFW---- 231
I+DE+ Y +LN +LP DIRV+ W P P +F ARFSC R YKYFF
Sbjct: 290 SYARPFDPIKDELPYANILNAILPPDIRVLAWCPDPPPNFDARFSCRQRRYKYFFTNPAF 349
Query: 232 -------------------------REN-LNLSAMESAGKKFVGEHDFRNFCK------- 258
RE L++ M A KK G HDFRN CK
Sbjct: 350 CPTPGPRGLRSTSAVAEGDEKQSQIREGWLDIEKMREAAKKLEGLHDFRNLCKIDPSKQM 409
Query: 259 -------------------------------------MDAANVHNY--------KRHVTS 273
+D+A+ N K S
Sbjct: 410 PSCERRITYADIVEWEDTGKMFSSHPALNQTGASSSGLDSASNSNGLNVAALLGKGDAYS 469
Query: 274 FEISPCYISF---EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
SP G ++ A + GSAFLWHQVRCMVA+LF++GQGLE +++ LLD
Sbjct: 470 SSPSPTVAGVGGASGPKVYAFCVHGSAFLWHQVRCMVAILFLVGQGLEQPSIVDDLLDVE 529
Query: 331 GIPRKPQYNMAPEIPLVLQSCDF 353
P +P Y MA + PLVL C F
Sbjct: 530 KTPTRPMYEMADDAPLVLWDCIF 552
>gi|71021049|ref|XP_760755.1| hypothetical protein UM04608.1 [Ustilago maydis 521]
gi|46100185|gb|EAK85418.1| hypothetical protein UM04608.1 [Ustilago maydis 521]
Length = 913
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 110/392 (28%), Positives = 176/392 (44%), Gaps = 79/392 (20%)
Query: 17 EALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKK 76
E+L R+ ELEA + + E + VE + + K
Sbjct: 54 ESLLARIVELEAQATSQRAAQARIDTEAHVARTSPATPTAVLTVEATEGRRTRQKQAAGK 113
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFAS-------DGNMEPTVESEIFKALEKT 129
KVK+ R +AL+ Y G + G A+ G+ PTVE ++ AL
Sbjct: 114 KVKKHKEFDFASAPCRKIALRFSYDGAGYSGLAAQNTTVPGSGSSLPTVEGVLWDALCTA 173
Query: 130 RLL--VADKKESHYSRCGRTDKGVSSVGQVIAIYLRS-----------NIKECNTNNASM 176
RL+ + +SRCGRTD+GVS+ GQV+A+++RS + ++ + +S+
Sbjct: 174 RLVDPALGMDGAGFSRCGRTDRGVSAAGQVVALWVRSKKLNQWPDRLEHQEQFSPLASSL 233
Query: 177 GETVQEEQIED------------EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISR 224
++ +D E+ YV++LNR+LP IR+ WSP ++FS+RF C+ R
Sbjct: 234 LSKPSPQEWDDLQEKRNAKLEGTELPYVQILNRILPSSIRIQAWSPVRSNFSSRFDCVYR 293
Query: 225 EYKYFF-------------------------------WRENLNLSAMESAGKKFVGEHDF 253
YKYFF L+++ M A ++ +GEHDF
Sbjct: 294 HYKYFFPAGPPRLFYPRSKTINGEDGVAFSVGGGQDAGATRLDIALMRDAARRLLGEHDF 353
Query: 254 RNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGN---------------QLCAIKIRGSA 297
RN CK+DA+ + NY+R + I + + + +RG+A
Sbjct: 354 RNLCKIDASKQITNYRRRIDGVSIDRVSSHWPSKNDGVEDDDGGEEGEEHMYVLNLRGTA 413
Query: 298 FLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
FL+HQVR ++A+LF++G LE VIE L++T
Sbjct: 414 FLYHQVRNIMAILFLVGARLEPPSVIEELMNT 445
>gi|313245560|emb|CBY40253.1| unnamed protein product [Oikopleura dioica]
Length = 402
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 159/311 (51%), Gaps = 21/311 (6%)
Query: 91 KRYVALKVMYFGQRFYGFASDG--NMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
KR +AL+ Y G ++ G + T+E IF A+ +T++ V D + Y GRTD
Sbjct: 64 KRKIALRFSYDGTKYNGLQRSPVPAGKTTIEDVIFDAMLRTKV-VDDIGTADYIAGGRTD 122
Query: 149 KGVSSVGQVIAIYLRSNIKECNTN-NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
KGV +V VI++++ S + E N N ++GE ++V ++NR LP DI +
Sbjct: 123 KGVHAVNNVISLFVNSRLSEDEINENVTVGER----------NFVAIINRQLPDDIWITS 172
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNY 267
W+ +DFSARF+C SR Y Y F L++ M+ A +GEHDFRNF + N
Sbjct: 173 WAQISSDFSARFNCKSRHYNYIFDSSGLDVELMKEAASYLIGEHDFRNFSQAQLER-QNT 231
Query: 268 KRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLL 327
R + +I + +C I+ S FL+HQ+R +A+L ++G LE +++ LL
Sbjct: 232 VRVCFAADIKQVP---NMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKELL 288
Query: 328 DTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAI-F 386
D PR+P Y A LVL C+++ +++ D L + N ++Y ++ +
Sbjct: 289 DVEKYPRRPSYKYANPDGLVLIDCEYENVEWIDGEDQSRFLASKIEN--KMYNMKIGLSV 346
Query: 387 HEALLNCLPLA 397
HE + L +
Sbjct: 347 HELIKKTLDIG 357
>gi|342321070|gb|EGU13008.1| Pseudouridine synthase [Rhodotorula glutinis ATCC 204091]
Length = 670
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 125/405 (30%), Positives = 174/405 (42%), Gaps = 120/405 (29%)
Query: 73 TGKKKVKEK-----MSGTLNHHFKRYVALKVMYFGQRFYGFASDG----NMEPTVESEIF 123
TGK+ K + + +L + KR++AL Y G G A PTVE I
Sbjct: 61 TGKRARKAQAATGPLPPSLANAPKRHIALLFSYEGWAHSGLAYQPKGVYTPLPTVEGCIL 120
Query: 124 KALEKTRLLVADKKESH-----YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGE 178
ALEK RL + ES + RCGRTD GVSS QVI +++RS++++ N G
Sbjct: 121 DALEKARL-IEPITESEGFGCGFERCGRTDAGVSSSAQVINLWVRSDLEDPMKLN---GR 176
Query: 179 TVQEEQIED--------------------------------------EIDYVRVLNRVLP 200
+ + E EI YV +LN+ LP
Sbjct: 177 EIDPDSPEGRRFARSGSPSRPRSSSSASSSSSDSVYGSGKRKAPSDVEIPYVTLLNKHLP 236
Query: 201 KDIRVIGWSPAPTDFSARFSCISREYKYFF------------------------------ 230
IR+ WSP FS+R+SCI R YKYFF
Sbjct: 237 PSIRMHAWSPISATFSSRYSCIWRHYKYFFSTSPISPLLASRFDFGAAYEAAGALPEHAA 296
Query: 231 -WRE----------NLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISP 278
W+E L++ M A K+ VGEHDFRN CK+D + + R V S I P
Sbjct: 297 EWQERLRRVDWNGLQLDVDLMRDAVKRLVGEHDFRNLCKIDPPKQLKLHIRTVNSASIDP 356
Query: 279 CYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT--------- 329
+ EG + + +RG AFL++QVR +VA+LF++G LE +++ LL T
Sbjct: 357 --LEGEGGDMFVLNLRGGAFLYNQVRHIVAILFLVGARLEHPSLVDKLLWTSDRTSHTVS 414
Query: 330 -NGIP----------RKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
N P +KP Y MA ++PL+L C F+ +F D
Sbjct: 415 QNAPPAGQPDHDILDQKPSYQMAEDLPLILWQCGFNSTEFDWRTD 459
>gi|108743218|dbj|BAE95388.1| pseudouridine synthase [Saccharomyces bayanus]
Length = 202
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 115/174 (66%), Gaps = 9/174 (5%)
Query: 188 EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGK 245
EI YV++LN++LP DIR+ + P P F ARFSC +R YKY F ++L+++ M A
Sbjct: 1 EIPYVQILNQLLPDDIRISAVCLRPPP-GFDARFSCTNRHYKYVFNGKHLDITKMSKAAS 59
Query: 246 KFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
F+GE+DFRNFCK+D + + N+KR + S +I P +F L GSAFLWHQVR
Sbjct: 60 YFLGENDFRNFCKLDGSKQLTNFKRSIVSAKILPVSDTFYCFDLV-----GSAFLWHQVR 114
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
CM+A+LF++GQ E +++ LLD P+KP Y+MA EIPL+L C+F +++
Sbjct: 115 CMMAILFLVGQTHEEPEIVLRLLDIEKTPQKPVYDMADEIPLLLYDCEFPQMEW 168
>gi|108743226|dbj|BAE95392.1| pseudouridine synthase [Saccharomyces bayanus]
Length = 215
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 80/174 (45%), Positives = 111/174 (63%), Gaps = 9/174 (5%)
Query: 188 EIDYVRVLNRVLPKDIRV--IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGK 245
EI YV++LN++LP DIR+ + P P F ARFSC R YKY F +L+++ M A
Sbjct: 1 EIPYVQILNQLLPDDIRISAVCLRPPP-GFDARFSCTRRHYKYVFNGRHLDITKMSKAAS 59
Query: 246 KFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
F+GE+DFRNFCK+D + + +KR + S EI P +F L GSAFLWHQVR
Sbjct: 60 YFLGENDFRNFCKLDGSKQLTKFKRTIVSAEILPVSDTFYCFDLV-----GSAFLWHQVR 114
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
CM+A+LF++GQ E +++ LLD P+KP Y+MA EIPL+L C F +++
Sbjct: 115 CMMAILFLVGQTHEEPEIVLCLLDIEKTPQKPVYDMADEIPLLLYDCTFPPMEW 168
>gi|198429149|ref|XP_002129315.1| PREDICTED: similar to Pseudouridylate synthase 3 [Ciona
intestinalis]
Length = 510
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 152/300 (50%), Gaps = 43/300 (14%)
Query: 92 RYVALKVMYFGQRFYGFA---------SDGNMEPTVESEIFKALEKTRLLVADKKESHYS 142
R +ALKV+Y G + G+A ++ VE + +AL + +L+ ++
Sbjct: 101 RRIALKVLYLGWDYVGYAFTKSSLAFSKPESISNVVERVLLEALLRQQLITGVGSVLNFD 160
Query: 143 RCGRTDKGVSSVGQVIAIYLRSNIKECN-------TNNASMGETVQE-EQIED------- 187
R GRTD+ VS + QV+++ +RSN+ + + + ++G T E E ED
Sbjct: 161 RAGRTDRQVSGLSQVVSVNVRSNLNKGHGVWYPKVEGSDNVGNTKPETEYFEDGFPVSDT 220
Query: 188 -----EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMES 242
E+ YV +LN+ LP DIR++ WSP FS R+ C SR Y+Y F R ++++ M
Sbjct: 221 TLDDGELPYVSLLNQALPPDIRILAWSPVKKTFSPRYQCRSRTYRYAFVRGSMDIELMNE 280
Query: 243 AGKKFVGEHDFRNFCKMDAANVH-NYKRHVTSFEISPCYISFEGNQ-------LCAIKIR 294
A +KFVG HD RNFCK+ + N + Y R + S ++ E NQ +C I
Sbjct: 281 AAQKFVGRHDMRNFCKVSSENAYRTYVRTINSIKVE------EFNQTNLPECDICVATIS 334
Query: 295 GSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
++++ Q+R M+++L IG G I+ +LD P+KP + + L L +FD
Sbjct: 335 AESYVYKQIRRMMSILGRIGSGEIPPSTIDEMLDVEKNPKKPSFKSWTPLNLTLIDAEFD 394
>gi|66361768|ref|XP_627406.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
gi|46228868|gb|EAK89738.1| Deg1p-like type II pseudouridylate synthase TruA [Cryptosporidium
parvum Iowa II]
Length = 283
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 152/299 (50%), Gaps = 47/299 (15%)
Query: 107 GFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI 166
F D + PT+E EI+KAL + RL + D RCGRTD+GV S G I++ LR+
Sbjct: 8 AFQKDDKI-PTIEGEIYKALLQLRL-IKDIDSCDLVRCGRTDRGVHSAGNYISVNLRTRA 65
Query: 167 KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREY 226
K N Y+ +LN VLP DIRVIG+ DFSARF C R Y
Sbjct: 66 KNLEPYN-----------------YMEMLNGVLPWDIRVIGYCEVRPDFSARFDCEYRLY 108
Query: 227 KYFFW--RENLNLSA-----------MESAGKKFVGEHDFRNFCKMDAANVHN--YKRHV 271
KYFF E +S M A K+F+G HD+R FCKMD N N Y R +
Sbjct: 109 KYFFPLNHERTKISKFPKIPPEQVPLMNVAAKQFLGTHDYRRFCKMDLKNRKNQTYIRTI 168
Query: 272 TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
F+I+ ++ E I+GSAFLWHQVR M+ +LF IGQ + +VI +L
Sbjct: 169 YEFDIN--FVD-ENRTFAVATIKGSAFLWHQVRLMMGILFEIGQQKFNPEVITQML--TD 223
Query: 332 IPRKP----QYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIF 386
+ +K + MA E+ LVL C F C+ ++ L+ L +E + +L+A+++
Sbjct: 224 VEQKNIAELSFQMATELGLVLWDCVFKEYDIQCNTNS---LKTFL-DESESLKLKASLY 278
>gi|403168693|ref|XP_003328281.2| hypothetical protein PGTG_09575 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167621|gb|EFP83862.2| hypothetical protein PGTG_09575 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 593
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 117/389 (30%), Positives = 173/389 (44%), Gaps = 113/389 (29%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLL----------- 132
+ H KR +AL + Y G+ G A D TVE E+F+AL RL+
Sbjct: 99 FDRHPKRKIALMISYQGELHGGLAWQPDVTRLSTVEGELFRALLVARLVEGAGEFEEQEE 158
Query: 133 --------VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI------------KECNTN 172
+ D + YSR GRTD GVS GQV+++++RS + K+ +++
Sbjct: 159 EDSERWRGLVDLNKWGYSRAGRTDAGVSGAGQVVSLWVRSQLRSVPAPFGFLPPKKTDSD 218
Query: 173 NASMGETVQEE----------QIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCI 222
+ S E E + E+E+ Y ++N +LP +RV+ WSP DF ARFSC
Sbjct: 219 DGSEEEPRGESAGPKQEQEQEEAEEELQYHTIINSILPNSVRVLAWSPVHHDFDARFSCQ 278
Query: 223 SREYKYFF------WRENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFE 275
+R YKYFF L++ AM A + +GEHDFRNFCK+D + + +++R + S E
Sbjct: 279 ARHYKYFFSLYESPQAPGLDIEAMNRAADRLIGEHDFRNFCKIDPSKQLAHFRRKILSAE 338
Query: 276 ISPCY----------------------------------ISFEGNQLCAIKIRGSAFLWH 301
I P ++ E N L + + G+AFL++
Sbjct: 339 IKPVLDPHHHHLLLLQQQQLSGPSGSSEKHPHPQIYPDALAPETNPLFVLDLVGTAFLYN 398
Query: 302 QVRCMVAVLFMIGQGLESIDVIESLLDT--NGIPR------------------------- 334
VR +V+VLF+IG G E I VI+ LL T N P
Sbjct: 399 MVRHIVSVLFLIGSGKEEISVIDRLLYTEPNEQPSIITTASEEGRSSSSSSCMVEKVEPI 458
Query: 335 --KPQYNMAPEIPLVLQSCDFDGLKFTCS 361
KP+Y A +PL+L C + F +
Sbjct: 459 DCKPEYPHASALPLLLYRCVYPEHSFRWT 487
>gi|406864676|gb|EKD17720.1| pseudouridylate synthase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 1054
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 124/262 (47%), Gaps = 49/262 (18%)
Query: 141 YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLP 200
Y+R G + ++ + + ++ E + + I DEI Y +LNR+LP
Sbjct: 643 YARPGSVEMASPALAPSRLSPQMTPTPDLGLSDPDYEEALNFDPIADEIPYCSLLNRLLP 702
Query: 201 KDIRVIGWSPAPT-DFSARFSCISREYKYFFWREN------------------------- 234
DIR++ W PAP DFSARFSC R+Y+YFF +
Sbjct: 703 PDIRILAWCPAPPQDFSARFSCRERQYRYFFTQPAFMPTPPQLEVPTQKGQTVAMEGKMR 762
Query: 235 ---LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEISPCYISFEG----- 285
LN+ M A K F G HDFRNFCK+D + N++R + +I S G
Sbjct: 763 DGWLNIKKMREAAKLFEGIHDFRNFCKVDPGKQISNFERRIFYADIEEVDDSTSGLAFVN 822
Query: 286 --------------NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
++ + GSAFLWHQVR MVAVLF++GQGLE ++ LLD
Sbjct: 823 GADFAPHSTRQAVNPKVYTFTLHGSAFLWHQVRHMVAVLFLVGQGLEKPSIVSELLDVET 882
Query: 332 IPRKPQYNMAPEIPLVLQSCDF 353
P +P Y MA + PLVL +C F
Sbjct: 883 NPGRPVYEMATDTPLVLWNCVF 904
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 22/182 (12%)
Query: 24 KELEADNAKLLS---KLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKE 80
K++EA+ K + K + EK+ ++V + T L +N ++ K KK +
Sbjct: 448 KKMEAETGKAQTTAEKYATWSQEKLIERV---TQLETELKIKNLSLDTTPEKKSFKKPRT 504
Query: 81 KMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVADKKE 138
+ + + R VA K+ Y G+R+ GF ++ P T+E E++KA K RL+ D
Sbjct: 505 ERRFDPSKYSTRLVAFKLAYLGKRYNGFECQKSVTPLPTIEEELWKAFNKARLIFPDVVN 564
Query: 139 SH-----------YSRCGRTDKGVSSVGQVIAIYLRSN--IKECNTNNASMGETVQEEQI 185
YS+CGRTDKGVS+ GQVI I +RSN + + AS E VQE
Sbjct: 565 PRQPGEVNWDGCEYSKCGRTDKGVSAFGQVIGIRVRSNRPLAKKREKRASE-EEVQEGAD 623
Query: 186 ED 187
ED
Sbjct: 624 ED 625
>gi|224007503|ref|XP_002292711.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971573|gb|EED89907.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 162
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 73/165 (44%), Positives = 97/165 (58%), Gaps = 3/165 (1%)
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
VLN VLP IR++GW P +FSARFSC R Y+YFF R NL+LSAM + +G HDF
Sbjct: 1 VLNNVLPPSIRILGWCPVSPEFSARFSCGQRTYRYFFPRRNLDLSAMAQGLQYMMGRHDF 60
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
RN CKM+ + E S +C ++I G AFLWHQ+RC++++LF +
Sbjct: 61 RNLCKMNCEQNEGEHPVIQPTEQSK---PSSSRDMCHVEIVGQAFLWHQIRCIMSILFYV 117
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
G+ LE+ +++ L D P KP Y MA E LVLQ C F L+
Sbjct: 118 GRQLETPQIVQQLFDIQTNPAKPSYEMASETALVLQDCTFGQLEL 162
>gi|195370371|ref|XP_002045883.1| GM20625 [Drosophila sechellia]
gi|194121623|gb|EDW43666.1| GM20625 [Drosophila sechellia]
Length = 248
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 123/205 (60%), Gaps = 11/205 (5%)
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK 136
KV++K + KR+V LK+ YFG + GFA + T+ES +F+AL +T L+ +
Sbjct: 33 KVQKKRMFDWSSAHKRHVLLKITYFGWDYQGFACQEDSNDTIESNLFRALTRT-CLIESR 91
Query: 137 KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLN 196
S+Y RCGRTDK VS+ QVI+I LRS + + + T + EIDY +LN
Sbjct: 92 ATSNYHRCGRTDKEVSAFCQVISIDLRSK----HPPESQLDPT----SLSSEIDYCGLLN 143
Query: 197 RVLPKDIRVIGWSPAPTD-FSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRN 255
RVLPK+I+ + W P + +SARF C+SR Y+YFF + +L+++AM A V DFRN
Sbjct: 144 RVLPKNIQCVAWMPLRSSVYSARFDCVSRSYRYFFPKGDLDIAAMRKACDLLVRHADFRN 203
Query: 256 FCKMDAAN-VHNYKRHVTSFEISPC 279
FCKMD N V NY R++ S + C
Sbjct: 204 FCKMDVHNGVTNYMRNLQSARVEAC 228
>gi|224082524|ref|XP_002306728.1| predicted protein [Populus trichocarpa]
gi|222856177|gb|EEE93724.1| predicted protein [Populus trichocarpa]
Length = 162
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/195 (49%), Positives = 111/195 (56%), Gaps = 40/195 (20%)
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
+LN VLPKDI + W+ F S + GKKF+GEHDF
Sbjct: 1 MLNGVLPKDIEL--WA------GVLFQVTSVQ------------------GKKFMGEHDF 34
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
RN CK DA R V F+G+QLCAIKI+GSAFL HQV CMVAVL MI
Sbjct: 35 RNLCKTDAVKC----RIVGDM--------FKGHQLCAIKIKGSAFLLHQVCCMVAVLLMI 82
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ--SCDFDGLKFTCSLDAGHDLRLH 371
GQGLES D+I++LLDT PRKPQY MAPEIPLVL S L +DA L H
Sbjct: 83 GQGLESPDLIDALLDTRRTPRKPQYLMAPEIPLVLLPVSLKVSSLHVLQCIDARQALHGH 142
Query: 372 LRNECQVYQLQAAIF 386
L NEC++YQL+AA F
Sbjct: 143 LENECRLYQLRAAAF 157
>gi|209882282|ref|XP_002142578.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
gi|209558184|gb|EEA08229.1| tRNA pseudouridine synthase A family protein [Cryptosporidium muris
RN66]
Length = 332
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 142/292 (48%), Gaps = 53/292 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
++ Y G +YG A PT+E E + A + +L + ++++ RCGRTDKGV S G
Sbjct: 29 FRISYIGTNYYGMAYQNETIPTIEREFYNACLRLKL-IKNREDCDLIRCGRTDKGVHSTG 87
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
I+I LR T + S +Y ++N VLP DIR++G+ +F
Sbjct: 88 NYISINLR-------TRDTS------------PYNYQEMINGVLPWDIRILGFCQVNNNF 128
Query: 216 SARFSCISREYKY-------------FFWRENLN-LSAMESAGKKFVGEHDFRNFCKMDA 261
SARF C SR YKY +F + N+N + M + K+F+G HDFR FCKMD
Sbjct: 129 SARFDCDSRVYKYIFPIDQIQNFEHNYFPKLNINHIDQMNKSCKQFIGTHDFRVFCKMDI 188
Query: 262 ANVHN--YKRHVTSFEI----------SPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
N N Y R + F + S S +L I I GSAFLWHQVR MV +
Sbjct: 189 KNRPNQTYVRTIYDFRVEVFNNNKISSSSFDNSINDTKLGVITIIGSAFLWHQVRLMVGI 248
Query: 310 LFMIGQGLESIDVIESLLDT----NGIPRKPQYNMAPEIPLVLQSCDFDGLK 357
LF I G + I LLD + IP P MA EI L+L C+F K
Sbjct: 249 LFEISLGKIRSECITKLLDNYFDKDEIPFFP---MASEIGLILWDCNFKEYK 297
>gi|388857792|emb|CCF48686.1| related to DEG1-pseudouridine synthase [Ustilago hordei]
Length = 650
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 152/317 (47%), Gaps = 81/317 (25%)
Query: 92 RYVALKVMYFGQRFYGFASD-------GNMEPTVESEIFKALEKTRLLVAD--KKESHYS 142
R +AL+ Y G + G A+ G+ PTVE ++ AL RL+ + +S
Sbjct: 78 RKIALRFSYDGAGYSGLAAQNVTPHGTGSSLPTVEGVLWDALCTARLVDPSLGMDGAGFS 137
Query: 143 RCGRTDKGVSSVGQVIAIYLRSNIKECN------------------TNNASMGETVQEEQ 184
RCGRTD+GVS+ GQV+A+++RS K+ N + E ++ +
Sbjct: 138 RCGRTDRGVSAAGQVVALWVRS--KKVNHWVDRVSLQSSFPSPSPLPPLSEELEEKRKAK 195
Query: 185 IED-EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR----------- 232
+E E+ YV++LNR+LP IR+ WSP +FSARF C R YKYFF
Sbjct: 196 LEKVELPYVQILNRILPPTIRIQAWSPVRANFSARFDCTYRHYKYFFPSGPPSVFLPPNS 255
Query: 233 ----------------ENLNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFE 275
L++ M A K+ +GEHDFRN CK+DA+ + NY+R +
Sbjct: 256 PFPSSSSTSAGVDAEATRLDIGLMRDAAKRLLGEHDFRNLCKVDASKQITNYRRRIDGVS 315
Query: 276 I----SPCYISFEGNQLC-------------------AIKIRGSAFLWHQVRCMVAVLFM 312
I S N + + +RG+AFL+HQVR ++A+LF+
Sbjct: 316 IDRVSSSSLWPTTSNPIGEGEVEGGESGEGGEGEGMFVLNLRGTAFLYHQVRNIMAILFL 375
Query: 313 IGQGLESIDVIESLLDT 329
IG LE +VIE L++T
Sbjct: 376 IGARLERPEVIEELMNT 392
>gi|302495964|ref|XP_003009994.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371]
gi|291173519|gb|EFE29349.1| hypothetical protein ARB_03805 [Arthroderma benhamiae CBS 112371]
Length = 409
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/259 (33%), Positives = 125/259 (48%), Gaps = 65/259 (25%)
Query: 160 IYLRSNIKECNTNN--ASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP-APTDFS 216
+ +S + + NT + + GE + I DE+ Y+++LN LP+DIRV+ W P P DF
Sbjct: 5 VATKSGMSDRNTQSGVSDTGEAKGWDDIADELPYIQILNGALPEDIRVLAWCPHLPPDFD 64
Query: 217 ARFSCISREYKYFFW----------------------------REN-LNLSAMESAGKKF 247
ARFSC R Y+YFF RE L++ AM A + F
Sbjct: 65 ARFSCRQRRYRYFFTQPAFCPTPGARGIVRSSELKDDLSLERPREGWLDIEAMREAAQYF 124
Query: 248 VGEHDFRNFCKMDAA-NVHNYKRHVTSFEIS--------------PCYISFE-------- 284
VG HDFRNFCK+D + + N+ R + +I P + FE
Sbjct: 125 VGSHDFRNFCKVDTSKQITNFVRRILRADIELVDPQRTPLGFVQMPGFEPFENGSRNTGV 184
Query: 285 ----------GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPR 334
++ + + G+AFLWHQ+R MV +LF++GQGLE ++ LLD PR
Sbjct: 185 PENINDINPAAGKVYSFTVHGTAFLWHQIRHMVGILFLVGQGLEHPSIVPELLDVTKNPR 244
Query: 335 KPQYNMAPEIPLVLQSCDF 353
+P Y MA + PLVL C F
Sbjct: 245 RPVYEMASDSPLVLWDCIF 263
>gi|307107300|gb|EFN55543.1| hypothetical protein CHLNCDRAFT_133992 [Chlorella variabilis]
Length = 593
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 97/158 (61%), Gaps = 5/158 (3%)
Query: 233 ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSF---EISPCYISFEGNQLC 289
E L++ M+ A F+GEHDFRNFCK+D A V N++R V E+ C ++ G +L
Sbjct: 284 EALDVGRMQEAAAFFLGEHDFRNFCKVDVAQVTNFRRRVLDCRVEELPAC--AWGGRRLL 341
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
+ IRG+AFLWHQVRCM AVL M+G+G E ++ +LLD +PRKPQY +A E PL+L
Sbjct: 342 QLHIRGTAFLWHQVRCMAAVLLMVGRGEEPPGIVATLLDPQQVPRKPQYTLASEEPLLLY 401
Query: 350 SCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFH 387
SC + GL+F S +R L + ++A + H
Sbjct: 402 SCAYGGLRFQRSRQNQDIVRGQLEGVLTSHLIRAGMLH 439
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 100/163 (61%), Gaps = 16/163 (9%)
Query: 74 GKKKVKEKMSGTLNHHF----KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKT 129
GK++ KE + F +RYVAL+++Y G + GFA + E T+E +F AL T
Sbjct: 57 GKRRRKELRGRGRDLDFSAYQQRYVALELLYLGHAYGGFARQEHTEQTIEGHLFAALRTT 116
Query: 130 RLLVADK--KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED 187
RL+ A+ +E YSR GRTDKGVS++GQV+A+ LRS A GE E +E
Sbjct: 117 RLVPAEASWQELRYSRGGRTDKGVSALGQVVALLLRSA--------ARTGEVQPEADVE- 167
Query: 188 EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF 230
+DY +LNRVLP+DIRV+GW+ P DFSARFS REYKY
Sbjct: 168 -LDYPSLLNRVLPQDIRVLGWADVPDDFSARFSAQYREYKYLI 209
>gi|401403432|ref|XP_003881470.1| hypothetical protein NCLIV_012350 [Neospora caninum Liverpool]
gi|325115883|emb|CBZ51437.1| hypothetical protein NCLIV_012350 [Neospora caninum Liverpool]
Length = 475
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 114/244 (46%), Gaps = 47/244 (19%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLV 133
K+ K+K + + + LK+ Y G + G A G TVE +F ALEKT
Sbjct: 71 KRRKQKRAFNWDAVHTAHFLLKLAYDGSAYSGIAYQGENSAVRTVEGALFDALEKT---- 126
Query: 134 ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR 193
C + + + + E+ DY
Sbjct: 127 -----------------------------------CLIRDRNAWQPAKRLFPEENYDYAA 151
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253
VLN VLP DIR++ +P P F ARF C R YKYFF E L+L M A ++FVGEH+F
Sbjct: 152 VLNAVLPGDIRIVASAPVPPGFDARFDCTGRVYKYFFHSEGLDLPRMHRAAQRFVGEHNF 211
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAI-KIRGSAFLWHQVRCMVAVLFM 312
R FCK+D N +R +TSF I P G+ CA+ I G +FLWHQVR M+A L
Sbjct: 212 RYFCKLDPRQYRNPRRTLTSFAIEPV-----GDSACAVATIAGRSFLWHQVRFMMAALLK 266
Query: 313 IGQG 316
+G+G
Sbjct: 267 VGRG 270
>gi|326482502|gb|EGE06512.1| pseudouridylate synthase [Trichophyton equinum CBS 127.97]
Length = 440
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 110/346 (31%), Positives = 156/346 (45%), Gaps = 90/346 (26%)
Query: 18 ALQNRVKELEAD-NAKLLSKLSL--CRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTG 74
+L NR+ ELE N + +S+ C+K+ T R T S +
Sbjct: 17 SLINRIHELERQLNQCPQNAVSIPSTECQKVNKSRGQAERTPTDSQPRERSTSSNPSRKS 76
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFA-SDGNME--PTVESEIFKALEKTRL 131
KK + K+ + + R++A+K Y G+R+ G ++GN PT+E E++KAL KTRL
Sbjct: 77 DKK-RRKIDPS--KYSTRHIAIKFAYLGKRYNGLEHANGNYTEVPTIEEELWKALRKTRL 133
Query: 132 LVADKK-----------------ESH-----YSRCGRTDKGVSSVGQVIAIYLR------ 163
+ K E H YS+CGRTDKGVS+ GQVI I +R
Sbjct: 134 IFPTHKNCTEEFSGKDNSPSRPYEIHWDGCQYSKCGRTDKGVSAFGQVIGIRVRSLRPAD 193
Query: 164 --------------------SNIKECNTNN--ASMGETVQEEQIEDEIDYVRVLNRVLPK 201
S + + NT N + G + I DE+ Y+++LN LP+
Sbjct: 194 PNPSADLKGGDVMDSVVATESGMADKNTQNGVSDTGAAKGWDDIADELPYIQILNGALPE 253
Query: 202 DIRVIGWSP-APTDFSARFSCISREYKYFFW----------------------------R 232
DIRV+ W P P DF ARFSC R Y+YFF R
Sbjct: 254 DIRVLAWCPHLPPDFDARFSCRQRRYRYFFTQPAFCPTPGARGIVRSPELKDDLSLARPR 313
Query: 233 EN-LNLSAMESAGKKFVGEHDFRNFCKMDAA-NVHNYKRHVTSFEI 276
E L++ AM A + FVG HDFRNFCK+D + + N+ R + +I
Sbjct: 314 EGWLDIEAMREAAQYFVGSHDFRNFCKVDTSKQITNFVRRILRADI 359
>gi|387592744|gb|EIJ87768.1| hypothetical protein NEQG_01840 [Nematocida parisii ERTm3]
gi|387595370|gb|EIJ92994.1| hypothetical protein NEPG_01949 [Nematocida parisii ERTm1]
Length = 326
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/306 (33%), Positives = 149/306 (48%), Gaps = 66/306 (21%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL-------------------L 132
R V LK+ Y GQ+++GFA + PTVE +F +L K + +
Sbjct: 6 RNVLLKLSYNGQQYHGFAYQPGL-PTVEHHLFLSLIKNKFVEINNGLPIQPSTFVWPKEI 64
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
+A Y +CGRTD GVS+ Q I+I+L SN E + Y
Sbjct: 65 LASIALMKYYKCGRTDAGVSAAAQFISIHLPSNT-------------------EKDYPYD 105
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN---LNLSAMESAGKKFVG 249
++N+ LP DIRV+GW +FSARF+CISREY+Y+F + LN+ M+ A KK +G
Sbjct: 106 IMINQHLPNDIRVLGWMFVDKEFSARFTCISREYEYYFSKRPASILNIETMKDASKKLLG 165
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISP------------CYISFE--------GNQLC 289
H F CK + + KR ++SP ISFE G ++
Sbjct: 166 THWFGRLCKQEKESSKQ-KRLEKKQKLSPDEVTAEESVRTVDLISFEKVCTDEITGVEVY 224
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
++IR +FL +QVR + ++LFM+G G S IE++L+ N + +K +A PLVL
Sbjct: 225 LMRIRARSFLHNQVRKIFSLLFMVGSG--SAIEIENILNKNEV-QKHDIKLAEPAPLVLS 281
Query: 350 SCDFDG 355
C F
Sbjct: 282 RCVFSN 287
>gi|330507400|ref|YP_004383828.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP6]
gi|328928208|gb|AEB68010.1| tRNA pseudouridine synthase A [Methanosaeta concilii GP6]
Length = 271
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 130/271 (47%), Gaps = 51/271 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G +YGF + TV+S++ +AL + ++ D + GRTD+GVS+
Sbjct: 3 VALKLAYLGDNYYGFQKQPD-RVTVDSQVRRALAQIGVIHGD-----FCYAGRTDRGVSA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRV--LNRVLPKDIRVIGWSPA 211
+GQVI ++ ED+ID R +N LP+DI WS A
Sbjct: 57 LGQVIDFWID----------------------EDKIDLTRPRCVNGRLPRDIWTWAWSIA 94
Query: 212 PTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHV 271
P FSAR++ + REY+Y W L+ ME A +GEHDFRNF +A V KR V
Sbjct: 95 PVGFSARWNALWREYQYLLWHPGLDRDLMEEAADMLLGEHDFRNFS---SAKVGTVKR-V 150
Query: 272 TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
EI E + L IR FLW+ VR +V +G G + + + LL
Sbjct: 151 EKLEIR------ERDGLFIFDIRADGFLWNMVRKIVGATEKVGSGQKDMRWFKDLL---- 200
Query: 332 IPRKPQYNM-APEIP---LVLQSCDFDGLKF 358
+P+ N AP P L+L +DGL +
Sbjct: 201 ---RPELNHGAPTAPAEGLILMEVGYDGLDW 228
>gi|428671151|gb|EKX72069.1| tRNA pseudouridine synthase A, putative [Babesia equi]
Length = 264
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 23/245 (9%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V + Y G+ +G A + E TVE +F AL+K +L D S Y R RTDKGV +
Sbjct: 13 VMIDFSYVGRDLHGLAYQKD-EDTVEGRLFDALDKVNML-KDLVSSRYERAARTDKGVHA 70
Query: 154 VGQVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEID-------------YVRVLNRVL 199
+ + ++ + + E ++ ++ E D R +N+ L
Sbjct: 71 LHNYCSFFVDPGFVLSLPDHLHRFYEFLKPSLVKFETDEERNLFRQTRISGMTRPINKHL 130
Query: 200 PKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
PK IRV + P +FSAR C R YKY+F EN+++ M A + FVG H+F FCK
Sbjct: 131 PKYIRVNSIAIVPPNFSARGDCTYRIYKYYFQPENMDIYLMREACQYFVGHHNFTQFCKT 190
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
D N + + + F I + L A I+GS+FLWHQVRCM+AVLF++G+G +
Sbjct: 191 DKRNPKDPNKTIYFFGIEKY-----NDLLHAAVIKGSSFLWHQVRCMMAVLFLVGKG--T 243
Query: 320 IDVIE 324
I+ +E
Sbjct: 244 INAVE 248
>gi|68072249|ref|XP_678038.1| tRNA pseudouridine synthase [Plasmodium berghei strain ANKA]
gi|56498378|emb|CAH98757.1| tRNA pseudouridine synthase, putative [Plasmodium berghei]
Length = 281
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 153/290 (52%), Gaps = 31/290 (10%)
Query: 107 GFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI 166
G A + TVE+++ + L++ L ++D S +SR RTDKGVS+ + I L++
Sbjct: 1 GSAYQKDNNNTVENKLIEKLQQLDL-ISDSNCS-FSRVSRTDKGVSARMNALTIRLKNKY 58
Query: 167 KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREY 226
+ S+ E + Y++ LN+ L K+I++I P +F AR +CI R Y
Sbjct: 59 PHLSI---SIIEKI----------YLKELNKKL-KNIQIIHIQCVPNNFDARLNCIQRTY 104
Query: 227 KYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGN 286
YFF +N N++ M A K F+GEH+F NFCK N ++ R + FEI +F
Sbjct: 105 VYFFINKNYNITKMNEATKIFLGEHNFSNFCKKRKNNT-SFIRTIHKFEIKNIDQNF--- 160
Query: 287 QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPL 346
KI+G++FL++Q+R MVA LF++G+ I+S+L+ N I K Y +A E L
Sbjct: 161 --YYFKIKGTSFLYNQIRHMVAALFLVGKNQLDGQDIKSMLENNSIKNK-NYKIADECGL 217
Query: 347 VLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNCLPL 396
+L S F F ++D + + L++ N+ +Q I +L C PL
Sbjct: 218 LLYSFKFSDFNFNFNID--NKIFLNVMNK----YIQTTILVVSL--CYPL 259
>gi|399215855|emb|CCF72543.1| unnamed protein product [Babesia microti strain RI]
Length = 270
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 127/265 (47%), Gaps = 24/265 (9%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ ++ Y G ++G A ++ TVES + AL K+ L+V D Y +C RTDKGV +
Sbjct: 14 ILVRYSYIGTNYHGSAYQKGVD-TVESHLINALTKSGLIV-DIYNCDYCKCSRTDKGVHA 71
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
I+++ +NI + + N + LN+ LP DI + P +
Sbjct: 72 RANYISLFALNNIPKLHLMN------------------INRLNKYLPNDICITKIFPVHS 113
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHN--YKRHV 271
FS R+ C R YKYFF NL + M A + F+GEHDF+ F K + + Y
Sbjct: 114 TFSCRYDCKGRIYKYFFNSTNLKICEMAEAAQLFIGEHDFKLFSKRNRGLTKSTMYGNTN 173
Query: 272 TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
S EI+ I+ + L I+ +FLWHQVRCM+ L MIG G ++ + +L
Sbjct: 174 CSKEITEFQIAAFASGLHVATIKARSFLWHQVRCMMGALIMIGSGQLTMQQLSDMLKLK- 232
Query: 332 IPRKPQYNMAPEIPLVLQSCDFDGL 356
Y MAP L+L C FD +
Sbjct: 233 -SNVKCYLMAPADGLLLYDCLFDNI 256
>gi|84489200|ref|YP_447432.1| tRNA pseudouridine synthase A [Methanosphaera stadtmanae DSM 3091]
gi|121725515|sp|Q2NHB4.1|TRUA_METST RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|84372519|gb|ABC56789.1| TruA [Methanosphaera stadtmanae DSM 3091]
Length = 274
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 141/294 (47%), Gaps = 41/294 (13%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R VALK+ Y G F+G+ N TVE E+ + ++T + + D +HYS GRTDKGV
Sbjct: 2 RRVALKIAYIGSNFHGYQRQPNYR-TVEGELLRVFKETNI-IEDTWTAHYSVAGRTDKGV 59
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
S G VI+ I DE ++ LN +LP DI++IG +
Sbjct: 60 HSTGNVISF------------------------ITDEDIHINQLNGLLPDDIKIIGEARV 95
Query: 212 PTDFSARFSCISREYKYF-----FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHN 266
P F RF ++R Y Y F ++NL+++ M A + F+G+H+FRNF K + N N
Sbjct: 96 PYGFKVRFP-LTRTYTYIQPISPFEKKNLDITKMHVAMESFIGKHNFRNFSKRNEKN-PN 153
Query: 267 YKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
K + E+ + F I G +FLW+ VR MV + +G G I+ I L
Sbjct: 154 RKIIDVNLEVDEDVLIFT--------IVGESFLWNMVRKMVTSIMEVGYGKLDINDINEL 205
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQ 380
L + + + AP L+L ++ +KF S A + L L+ E +++
Sbjct: 206 LKPKELRQFIRLQPAPANGLILSDMEYKNIKFKDSEYAKNKLVEFLKKEYMLHE 259
>gi|237844499|ref|XP_002371547.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49]
gi|211969211|gb|EEB04407.1| hypothetical protein TGME49_020220 [Toxoplasma gondii ME49]
Length = 370
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 79/128 (61%), Gaps = 6/128 (4%)
Query: 190 DYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVG 249
DY VLN VLP DIR++ +P F ARF C R YKYFF E L+L M A ++FVG
Sbjct: 17 DYAAVLNAVLPGDIRIVASAPVSPTFDARFDCTGRVYKYFFHSEGLDLQRMHQAAQRFVG 76
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAI-KIRGSAFLWHQVRCMVA 308
EH+FR FCK+D N +R +TSF + G+ +CA+ I G +FLWHQVR M+A
Sbjct: 77 EHNFRYFCKLDPRQYRNPRRTLTSFAVESA-----GDGVCAVATIAGRSFLWHQVRFMMA 131
Query: 309 VLFMIGQG 316
L +G+G
Sbjct: 132 ALLKVGRG 139
>gi|378754991|gb|EHY65019.1| hypothetical protein NERG_02075 [Nematocida sp. 1 ERTm2]
Length = 326
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 142/302 (47%), Gaps = 63/302 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKK-------------- 137
R V LK+ Y GQ ++GFA + PTVE +F + K + + A++K
Sbjct: 6 RNVLLKLSYNGQNYHGFAYQPGL-PTVEHHLFLSFVKAKFIQAEEKQVRPSTFVWPKEIL 64
Query: 138 ----ESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR 193
E Y +CGRTD GVS+ Q ++++L A G+ E Y
Sbjct: 65 SGIAERKYYKCGRTDAGVSAASQFVSLFL----------PAPAGK---------EYPYDL 105
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRE---NLNLSAMESAGKKFVGE 250
+LN+ LP+DIRV+GW FSARFSCISREY+Y+F R +L++ M +K +G
Sbjct: 106 ILNQHLPEDIRVLGWMFVDDQFSARFSCISREYEYYFSRRAGSSLSIEKMADESQKLLGT 165
Query: 251 HDFRNFCKM------------------DAANVHNYKRHVTSFEISPCY-ISFEGNQLCAI 291
H F CK D A R V S S G ++ +
Sbjct: 166 HWFGRLCKQEKEASKKKRLEKKQKVSPDEACAEEAVRTVDSIVFEKVSEDSVTGVEVYLM 225
Query: 292 KIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSC 351
+IR +FL +QVR + +VL M+G G S + ++L+ N P+K +A PLVL SC
Sbjct: 226 RIRAKSFLHNQVRKIFSVLHMLGTG--SDIELANILNKNQ-PQKKDIKLADPPPLVLASC 282
Query: 352 DF 353
F
Sbjct: 283 VF 284
>gi|156088547|ref|XP_001611680.1| tRNA pseudouridine synthase A family protein [Babesia bovis]
gi|154798934|gb|EDO08112.1| tRNA pseudouridine synthase A family protein [Babesia bovis]
Length = 248
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 13/225 (5%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
+ Y G ++G A + TVE +F+AL + +D + Y RCGRTD+ V ++
Sbjct: 15 MDFSYIGTGYHGLAYQSDEPNTVEGHLFRALSLANV-ASDVLNNGYERCGRTDRDVHALH 73
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIED--EID-YVRVLNRVLPKDIRVIGWSPAP 212
+ + C N+ + E + I+ + + +N+ LP+ IRV P
Sbjct: 74 NYASFF----PDPCPPNSPCSTVSPDERGVGPCYRINTFTKAINKHLPRGIRVNWVKHVP 129
Query: 213 TDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVT 272
DFS+R +C R YKYFF +++LS ++ A + F+G+H+F FCK D N + +
Sbjct: 130 DDFSSRRNCTFRVYKYFFQLGSMDLSLIQDACRHFLGQHNFNQFCKTDNRNPKDSHGTIY 189
Query: 273 SFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
SFE+ LC I G AFLWHQVRCM+ VLF +G+G+
Sbjct: 190 SFEVER-----YNELLCVATICGRAFLWHQVRCMMGVLFKVGEGI 229
>gi|430768618|ref|NP_001258914.1| tRNA pseudouridine(38/39) synthase isoform 2 [Homo sapiens]
Length = 273
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 105/170 (61%), Gaps = 9/170 (5%)
Query: 240 MESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIK 292
M+ A +K+VG HDFRN CKMD AN V N++R + S ++ SP + E QLC +
Sbjct: 1 MDYAAQKYVGTHDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFE 60
Query: 293 IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCD 352
+ G AFL+HQVRCM+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C
Sbjct: 61 VTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 120
Query: 353 FDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL--LNCLPLANGL 400
F+ +K+ +A HL+ + ++ + + L L+ +P+ G+
Sbjct: 121 FENVKWIYDQEAQEFNITHLQQLWANHAVKTHMLYSMLQGLDTVPVPCGI 170
>gi|297601003|ref|NP_001050239.2| Os03g0381100 [Oryza sativa Japonica Group]
gi|255674546|dbj|BAF12153.2| Os03g0381100 [Oryza sativa Japonica Group]
Length = 305
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 94/152 (61%), Gaps = 17/152 (11%)
Query: 12 LQSQLEALQNRVKELEADNAKLLSKLSLCRC-------EKIEDKVHDGVEDGTTLVEENR 64
+++++ AL+ RV+ELE +N +L S C C V + + ++N
Sbjct: 15 MRAEVAALRLRVQELERENQRLGKIASRCTCGSSKDDSAASSPVVSESLSSSKQEPQKNV 74
Query: 65 KTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFK 124
K+ GC+ G ++H KR +ALK+MYFGQRFYGFAS+ + EPTVESEIFK
Sbjct: 75 KSHCRGCQVG----------VVSHCPKRLIALKIMYFGQRFYGFASEAHTEPTVESEIFK 124
Query: 125 ALEKTRLLVADKKESHYSRCGRTDKGVSSVGQ 156
ALE+ +LLV +KES YSRCGRTDKGVS+ GQ
Sbjct: 125 ALERAKLLVGSRKESCYSRCGRTDKGVSATGQ 156
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNEC 376
+++ ++++SLLD PRKPQY MA EIPL+L+SC FD + F CS +A L HL++E
Sbjct: 177 MDAANIVDSLLDITKTPRKPQYKMASEIPLILRSCLFDEVNFMCSSEASQALIEHLKDEY 236
Query: 377 QVYQLQAAIFHEALLNCL 394
Y LQAAIF EA L+CL
Sbjct: 237 HQYMLQAAIFCEA-LSCL 253
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 240 MESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCY 280
M+ A KF+GEHD+RNFCKMDAAN+ + +T P Y
Sbjct: 158 MQKAALKFIGEHDYRNFCKMDAANIVDSLLDITKTPRKPQY 198
>gi|83409929|emb|CAI64350.1| tRNA pseudouridine synthase A [uncultured archaeon]
Length = 276
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 130/263 (49%), Gaps = 38/263 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ALK+ Y G ++G+ ++ PT+E E+F+ LE+ ++ + D K + Y GRTD GV++
Sbjct: 3 IALKIAYIGTEYHGYQIQPDV-PTIEKELFRTLEELKI-ITDPKSARYIGSGRTDAGVNA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQV+A NT+N + RV+N LP I V + P
Sbjct: 61 LGQVVAF---------NTDNPKLA-------------IPRVINSKLPPSIWVWSRAEVPD 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCK--MDAANVHNYKRHV 271
DF R +SREYKYF E LN+S + A K G HDF NF MD + V +R
Sbjct: 99 DFDPRRHAVSREYKYFVCGECLNISLLRKASKLLRGTHDFANFATPDMDKSTVRTVER-- 156
Query: 272 TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
I EG +L + I+ +F+WH VR +V L M+G ++ ++ +L +
Sbjct: 157 -------IDIRVEG-RLINLDIKADSFVWHMVRKIVTALRMVGDQTREVEWLKRMLHPDE 208
Query: 332 IPRKPQYNMAPEIPLVLQSCDFD 354
+ AP L+L++ ++D
Sbjct: 209 F--EEGLEPAPACGLLLKNVNYD 229
>gi|268324810|emb|CBH38398.1| tRNA pseudouridine synthase A [uncultured archaeon]
Length = 275
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 141/299 (47%), Gaps = 35/299 (11%)
Query: 94 VALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVS 152
VALK+ Y G ++GF E TVE E+FKAL++ +L D+K ++YS GRTDKGV
Sbjct: 8 VALKIGYLGTNYHGFQIQPQAELQTVEGELFKALKRLGIL-EDRKTANYSYAGRTDKGVH 66
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
++ QV++ +T N +M R++N +LP DI + +
Sbjct: 67 ALAQVVSF---------DTLNQNMTP--------------RMINTMLPNDIWALAIAKPH 103
Query: 213 TDFSARFSCISREYKYF-FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHV 271
F+AR I REY+YF F + L++S M A + +G HDF NF + D + + +
Sbjct: 104 AGFNARKEAIRREYRYFLFLQTELDISRMRDASELLIGAHDFSNFSQRDGLEGKSLIKEI 163
Query: 272 TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
I + + I I S FL VR +V+ L M+G G + I+ LLD
Sbjct: 164 KQVNI------VKSDLFIIIDIAASGFLRKMVREIVSALSMVGSGKRAKSWIQDLLD--- 214
Query: 332 IPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL 390
+ K Q AP LVL+ + L+F A + L+ + + AA+ + +
Sbjct: 215 LKIKEQIEPAPAFGLVLKDVSYHELEFVVDEYAKRRITARLKKDLFFHATMAAVLGDMI 273
>gi|70952957|ref|XP_745611.1| tRNA pseudouridine synthase [Plasmodium chabaudi chabaudi]
gi|56525989|emb|CAH74339.1| tRNA pseudouridine synthase, putative [Plasmodium chabaudi
chabaudi]
Length = 279
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 138/257 (53%), Gaps = 24/257 (9%)
Query: 107 GFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI 166
G A + TVE+++ + L + L ++D S +SR RTDKG + + A+ +R I
Sbjct: 1 GSAYQKDNNNTVENKLIERLHQLDL-ISDSNCS-FSRVSRTDKGSARMN---ALTIRLKI 55
Query: 167 KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREY 226
K + + S+ E + Y++ LN+ L K+I+++ P +F AR +CI R Y
Sbjct: 56 KYPHLS-ISIIEKI----------YLKELNKKL-KNIQIVHIQCVPNNFDARLNCIQRTY 103
Query: 227 KYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGN 286
YFF +N N+ M A K F+GEHDF NFCK N ++ R + FEI +F
Sbjct: 104 LYFFVNKNYNIPRMNEAAKIFLGEHDFSNFCK-KRKNTISFIRTIHKFEIKRIDQNFY-- 160
Query: 287 QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPL 346
KI+G++FL++Q+R MVA LF++G+G I+S+L+ N + K Y +A E L
Sbjct: 161 ---YFKIKGTSFLYNQIRHMVASLFLVGKGQLDEHDIKSMLENNSVKNK-NYKIADECGL 216
Query: 347 VLQSCDFDGLKFTCSLD 363
+L S F L F +D
Sbjct: 217 LLHSFKFSDLNFDVKVD 233
>gi|242398608|ref|YP_002994032.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739]
gi|259550478|sp|C6A238.1|TRUA_THESM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|242265001|gb|ACS89683.1| tRNA pseudouridine synthase A [Thermococcus sibiricus MM 739]
Length = 266
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 146/300 (48%), Gaps = 36/300 (12%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ALK+ Y G +FYGF ++ TVE E+ K L+K + + D KE+++ RTD+GVS+
Sbjct: 3 IALKIAYDGTKFYGFQRQPDLR-TVEGELIKVLKKLGI-IEDVKEANFKGASRTDRGVSA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G VIA NT + E R+LN L +DI ++G + P
Sbjct: 61 LGNVIAF---------NTAKPELAEA-------------RILNHHL-RDIWILGKAEVPE 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF RF ++ Y+Y+ + E +++ +++ + F+G HDF NF +++ R +
Sbjct: 98 DFHPRFWAKNKIYRYYLFDEGIDVIKLKACAEAFLGRHDFSNFARLE--EFRKPVREINR 155
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
++ F ++ ++I G +FLW R ++ L + G G+ SI +E +L
Sbjct: 156 IDV------FSRGRIIVVEIEGKSFLWEMTRRIITALKLCGLGVLSIGDVELMLKEKVDK 209
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLNC 393
+ P AP LVL ++G+KF A ++ + Y ++AI + L++
Sbjct: 210 KLPP---APPENLVLWEVGYEGIKFEVDAYAIEKVKREFLERFRKYLTKSAILEDWLISL 266
>gi|441644257|ref|XP_004090575.1| PREDICTED: tRNA pseudouridine(38/39) synthase isoform 2 [Nomascus
leucogenys]
Length = 273
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 89/132 (67%), Gaps = 7/132 (5%)
Query: 240 MESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIK 292
M+ A +K+VG HDFRN CKMD AN V N++R + S ++ SP + E QLC +
Sbjct: 1 MDYAAQKYVGTHDFRNLCKMDVANGVVNFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFE 60
Query: 293 IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCD 352
+ G AFL+HQVRCM+A+LF+IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C
Sbjct: 61 VTGQAFLYHQVRCMMAILFLIGQGMEKPELIDELLNIEKNPQKPQYSMAVEFPLVLYDCK 120
Query: 353 FDGLKFTCSLDA 364
F+ +K+ +A
Sbjct: 121 FENVKWIYDQEA 132
>gi|116754296|ref|YP_843414.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
gi|121692939|sp|A0B7V0.1|TRUA_METTP RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116665747|gb|ABK14774.1| tRNA pseudouridine synthase A [Methanosaeta thermophila PT]
Length = 267
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 124/249 (49%), Gaps = 45/249 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ALK+ Y G R+YGF + TVES + AL R+ VA+ + GRTD+GVS+
Sbjct: 3 IALKIAYLGDRYYGFQRQPGLR-TVESVMRDAL--LRIGVAN---GDFCYAGRTDRGVSA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQVI ++ E+ + + RV+N +LP D+ + AP
Sbjct: 57 LGQVIDFWI--------------------EEDRAYLAFPRVINSLLPSDVWAWARAVAPV 96
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
FSAR+S + REY+YF + +++LSA+ A VG HDFRNF + V +R
Sbjct: 97 GFSARWSALWREYRYFLFSPDIDLSAVREAAGHLVGTHDFRNFSM---SKVDTVRR---- 149
Query: 274 FEISPCYISFEGNQLCAI---KIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
IS + N C I +R F+W+ VR +V L +IG G + +D I LLD +
Sbjct: 150 ------IISIDVNAHCGIVVFDVRAEGFIWNMVRRIVGALELIGIGEKPVDWILELLDPS 203
Query: 331 ---GIPRKP 336
G P P
Sbjct: 204 TPHGAPTAP 212
>gi|408383137|ref|ZP_11180676.1| tRNA pseudouridine synthase A [Methanobacterium formicicum DSM
3637]
gi|407814245|gb|EKF84877.1| tRNA pseudouridine synthase A [Methanobacterium formicicum DSM
3637]
Length = 274
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 92/274 (33%), Positives = 128/274 (46%), Gaps = 53/274 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALKV Y G FYGF N+ TVE E+ KALEK+ + + +S YS GRTD+GV +
Sbjct: 4 VALKVAYLGTAFYGFQRQPNLR-TVEGELLKALEKSGA-ITNLGQSSYSIAGRTDRGVHA 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G V++ C D+ + +N VLP DIR++G P P
Sbjct: 62 LGNVVSF--------CT----------------DKEPIINQVNDVLPMDIRILGSCPVPQ 97
Query: 214 DFSARFSCISREYKYFFWR----ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKR 269
F R++ R Y+Y R E +L M+ A G H+F NF + N N R
Sbjct: 98 GFKTRYA-YKRHYRYVLCRKTGEEEWDLDKMQEAAHLMEGTHNFINFSR---RNERNPIR 153
Query: 270 HVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
V S I+ NQ C + + G +FLW+ VR MV +L +G+ I+ +E D
Sbjct: 154 KVDSVRITA------ENQGCLVDVEGESFLWNMVRKMVTILLCVGKHEMGIEEVEKCFD- 206
Query: 330 NGIPRKPQYN-----MAPEIPLVLQSCDFDGLKF 358
P+YN M PE L+L G+KF
Sbjct: 207 ------PEYNACIMPMPPE-SLILMDVFHKGVKF 233
>gi|126180241|ref|YP_001048206.1| tRNA pseudouridine synthase ACD [Methanoculleus marisnigri JR1]
gi|166228738|sp|A3CXX4.1|TRUA_METMJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|125863035|gb|ABN58224.1| tRNA pseudouridine synthase A [Methanoculleus marisnigri JR1]
Length = 270
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 136/289 (47%), Gaps = 46/289 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+A + YFG RF+G M+P TVE E A RL D +E++++ GRTD+G
Sbjct: 3 LAFRFSYFGDRFFG----SQMQPDLCTVEGEFIGACRLLRLF-DDWREANFATAGRTDRG 57
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV + T + E+ + LNRVLP DI GW+
Sbjct: 58 VHARSQVCSFL-----------------TDKPERA------IEALNRVLPADIWCTGWAE 94
Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRH 270
AP F R+S +SR Y+Y+F + +AM A ++F+G HDF F + A N +R
Sbjct: 95 APDGFHPRYSAVSRTYRYYFSAPG-DAAAMHEAAQEFLGRHDFSAFAR---AGDRNPERR 150
Query: 271 VTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
+ + + F + ++ G +FLW+ VRCM +L +G+G I LL T
Sbjct: 151 ILASRV------FIDGEFAVFEVTGESFLWNMVRCMATMLGRVGRGEAEAGEIARLL-TG 203
Query: 331 GIPRKPQYNMAPEIPLVLQSCDFDGLKFT-CSLDAGHDLRLHLRNECQV 378
+ R+ AP L+L D+ G+ FT +DAG L R+ V
Sbjct: 204 PVERR--VAAAPPEGLILWDIDY-GIPFTPLPIDAGSSRHLGDRHRYHV 249
>gi|221054442|ref|XP_002258360.1| tRNA pseudouridine synthase [Plasmodium knowlesi strain H]
gi|193808429|emb|CAQ39132.1| tRNA pseudouridine synthase, putative [Plasmodium knowlesi strain
H]
Length = 306
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 137/264 (51%), Gaps = 23/264 (8%)
Query: 100 YFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIA 159
Y G F G A + TVE+ + L L+ + +SR RTDKGVS+ ++ A
Sbjct: 13 YVGMGFNGSAYQKDNPNTVENRLMDCLHDMNLISG--VDQPFSRVSRTDKGVSA--RMNA 68
Query: 160 IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
+ +R I+ + T+Q+ Q YV+ +N+ L K+++VI P F AR
Sbjct: 69 LTIRLKIRHPHM-------TLQDIQRV----YVKEINKKL-KNMQVIDIRSVPNFFDARL 116
Query: 220 SCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPC 279
+CI R Y YFF +N N ++ K FVGEHDF NFCK N ++R + FE+
Sbjct: 117 NCIHRTYLYFFIDKNYNFDRIKQGCKLFVGEHDFSNFCK-KRKNSTCFRRTILKFEVRRM 175
Query: 280 YISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYN 339
+F KI+G++FL++Q+R MVA LF +G G ++ + ++L+ N K +
Sbjct: 176 DKNFH-----YFKIKGTSFLYNQIRHMVAALFQVGTGNLALGDLANMLN-NHPSSKKNFQ 229
Query: 340 MAPEIPLVLQSCDFDGLKFTCSLD 363
+A E L+L S F+ L F ++D
Sbjct: 230 IANEDGLLLYSFKFNDLNFHVNVD 253
>gi|296005181|ref|XP_001351959.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7]
gi|225631808|emb|CAD51770.2| tRNA pseudouridine synthase, putative [Plasmodium falciparum 3D7]
Length = 312
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 134/260 (51%), Gaps = 23/260 (8%)
Query: 100 YFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIA 159
YFG F G A + + TVE+++ + L K L+ D ++ SR RTDKGVS+ ++
Sbjct: 13 YFGMEFNGSAYQKDNDNTVENKLLENLYKLELI--DNYDTPLSRVSRTDKGVSA--RING 68
Query: 160 IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
I LR NIK N + E ++ E + K+I + F AR
Sbjct: 69 INLRLNIK---YENVPIFEIEKKYVKELK---------KKLKNIHIHDIKHVSNTFDARL 116
Query: 220 SCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPC 279
+CI R Y YFF +N N+ M+ A K F+GEHDF N CK NV + +R V F+I
Sbjct: 117 NCIQRTYVYFFINKNYNIEKMKKAAKLFIGEHDFSNCCK-KGKNVTSNRRTVLKFDIRNI 175
Query: 280 YISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYN 339
KI+G +FL++Q+R MVA+LF++G+GL + + ++L+ RK Y+
Sbjct: 176 -----DKHFYYFKIKGISFLYNQIRHMVAILFLVGKGLLDNNDVNNILNNTSTKRK-NYH 229
Query: 340 MAPEIPLVLQSCDFDGLKFT 359
+A E L+L S F+ K+
Sbjct: 230 IADENGLLLYSFKFNDYKYN 249
>gi|159117386|ref|XP_001708913.1| Pseudouridine synthase, putative [Giardia lamblia ATCC 50803]
gi|157437027|gb|EDO81239.1| Pseudouridine synthase, putative [Giardia lamblia ATCC 50803]
Length = 351
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 140/301 (46%), Gaps = 28/301 (9%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK--KESHYSRCGRTDKGV 151
VAL V + G F+G A TVE +F+ L+KT L ++ K+ R GRTD GV
Sbjct: 3 VALLVAFHGTAFHGNAYQPTGGSTVEGALFEGLQKTGYLKENETIKDIELERTGRTDAGV 62
Query: 152 SSVGQVIAIYLRSNIKECN---TNNASMGETVQEEQIEDEIDYVRV----------LNRV 198
S+ + + L + +N+ + ++ IE + LNRV
Sbjct: 63 SAECMLYTLQLGKLVPAVPCLPPHNSRVLGALEGLPIEPSSICIHTSGSATCLAFHLNRV 122
Query: 199 LPKDIRVIGWSPA-PTDFSARFSCISREYKYFF-WRENLNL-SAMESAGKKFVGEHDFRN 255
LP IRV+G S A P DFSAR SC++REY+Y + NL SA ++F+G + F N
Sbjct: 123 LPSQIRVLGLSTAIPKDFSARHSCVAREYEYILGYNVPPNLREKANSAAQRFLGSNSFHN 182
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC + + Y R + E+ +E C + GSAFL+HQVR M ++L I
Sbjct: 183 FCHHERDHKTVYNRQIYCSEV------YEHENACIFHVIGSAFLYHQVRYMASMLIHIMA 236
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLK----FTCSLDAGHDLRLH 371
GLE+ IE LL + + P L + + L F CS+ A +L H
Sbjct: 237 GLENESAIEYLLTKELSISGHSFPLVPSRYLTFKCGWYPPLPSSGSFYCSIRAYEELVKH 296
Query: 372 L 372
+
Sbjct: 297 V 297
>gi|19074961|ref|NP_586467.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1]
gi|19069686|emb|CAD26071.1| tRNA PSEUDOURIDINE SYNTHASE A [Encephalitozoon cuniculi GB-M1]
Length = 339
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 133/258 (51%), Gaps = 30/258 (11%)
Query: 68 SGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALE 127
SGG + ++ +K G L KR +ALK+ Y G+R+ G + E T+ + AL+
Sbjct: 38 SGGMERSRR---QKHRGALKCISKRTIALKISYDGRRYSGVSPQSGRE-TIGGYLEYALK 93
Query: 128 KTRL---LVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184
TRL LV GRTD GVS++G + + L S I+ N + A V E+
Sbjct: 94 STRLGEKLVY---------AGRTDAGVSAIGMIASGVLTSRIEMPNRSYA-----VAEDD 139
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244
+ E Y +LN LP DIRV+GW+P P FSARF+CI R+Y+Y+F ++ L++ M A
Sbjct: 140 YK-EYKYDVMLNNHLPPDIRVVGWAPVPDTFSARFTCIQRQYRYYFHKKGLDIDRMSKAA 198
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
+ G F F K N Y+R + C + +G+ L + IR AFL + VR
Sbjct: 199 SEIKGMSSFYCFSKHSDKNA-RYER-----TLDECRVVDDGD-LYYLDIRARAFLHNMVR 251
Query: 305 CMVAVLFMIGQGLESIDV 322
+V + G+G ES DV
Sbjct: 252 KIVWAIKKSGRG-ESYDV 268
>gi|449328632|gb|AGE94909.1| tRNA pseudouridine synthase a [Encephalitozoon cuniculi]
Length = 339
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 133/258 (51%), Gaps = 30/258 (11%)
Query: 68 SGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALE 127
SGG + ++ +K G L KR +ALK+ Y G+R+ G + E T+ + AL+
Sbjct: 38 SGGMERSRR---QKHRGALKCISKRTIALKISYDGRRYSGVSPQSGRE-TIGGYLEYALK 93
Query: 128 KTRL---LVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184
TRL LV GRTD GVS++G + + L S I+ N + A V E+
Sbjct: 94 STRLGEKLVY---------AGRTDAGVSAIGMIASGVLTSRIEMPNRSYA-----VAEDD 139
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244
+ E Y +LN LP DIRV+GW+P P FSARF+CI R+Y+Y+F ++ L++ M A
Sbjct: 140 YK-EYKYDVMLNNHLPPDIRVVGWAPVPDTFSARFTCIQRQYRYYFHKKGLDIDRMSKAA 198
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
+ G F F K N Y+R + C + +G+ L + IR AFL + VR
Sbjct: 199 SEIKGMSSFYCFSKHSDKNA-RYER-----TLDECRVVDDGD-LYYLDIRARAFLHNMVR 251
Query: 305 CMVAVLFMIGQGLESIDV 322
+V + G+G ES DV
Sbjct: 252 KIVWAIKKSGRG-ESYDV 268
>gi|327401434|ref|YP_004342273.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6]
gi|327316942|gb|AEA47558.1| tRNA pseudouridine synthase A [Archaeoglobus veneficus SNP6]
Length = 290
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/279 (31%), Positives = 129/279 (46%), Gaps = 36/279 (12%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G F GF + E TVE E+FKA E + V K S+Y GRTD GV +
Sbjct: 27 VALKLAYIGTDFAGFQYQPD-ERTVEGELFKAFESLGINV---KASNYKCAGRTDAGVHA 82
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV+A+ + S + V RV+N LP DI V W+ P
Sbjct: 83 FSQVVAL------------DVSDAKKVLP----------RVINANLPDDIVVWAWAKVPD 120
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF+ R++ SR Y Y + ++SAM A K +G HDF NF K + R + +
Sbjct: 121 DFNPRYAT-SRTYIYVLYSREYDISAMRKAAKLLLGTHDFTNFTKKFGEG-QSCVRTIYN 178
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
E+ +I G+AF W+ VRC++A L +G S++ E +L N
Sbjct: 179 VELRV------NGDFLIFEIEGNAFTWNMVRCIIAALEAVGSRHRSVEWFEEML--NPEK 230
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHL 372
+ + AP L+L+ + G++F A L+L L
Sbjct: 231 HRERIEPAPAYGLILKDIKYSGVEFEVDDYAWRSLQLKL 269
>gi|67624003|ref|XP_668284.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659475|gb|EAL38050.1| hypothetical protein Chro.80602 [Cryptosporidium hominis]
Length = 210
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 103/192 (53%), Gaps = 24/192 (12%)
Query: 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFW--RENLNLSA---------- 239
+ +LN VLP DIRVIG+ DFSARF C R YKYFF E +S
Sbjct: 1 MEMLNGVLPWDIRVIGYCEVRPDFSARFDCEYRLYKYFFPLNHERTKISKFPKIPPEQVP 60
Query: 240 -MESAGKKFVGEHDFRNFCKMDAANVHN--YKRHVTSFEISPCYISFEGNQLCAIKIRGS 296
M+ A K+F+G HD+R FCKMD N N Y R + F+I+ ++ E I+GS
Sbjct: 61 LMDIAAKQFLGTHDYRRFCKMDLKNRKNQTYIRTIYEFDIN--FVD-ENRTFAVATIKGS 117
Query: 297 AFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKP----QYNMAPEIPLVLQSCD 352
AFLWHQVR M+ +LF IGQ + +VI +L + +K + MA E+ LVL C
Sbjct: 118 AFLWHQVRLMMGILFEIGQQKFNPEVITQML--TDVEQKNIAELSFQMATELGLVLWDCV 175
Query: 353 FDGLKFTCSLDA 364
F C++++
Sbjct: 176 FKEYDIQCNINS 187
>gi|397781563|ref|YP_006546036.1| tRNA pseudouridine synthase A [Methanoculleus bourgensis MS2]
gi|396940065|emb|CCJ37320.1| tRNA pseudouridine synthase A [Methanoculleus bourgensis MS2]
Length = 268
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 122/269 (45%), Gaps = 44/269 (16%)
Query: 94 VALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+A++ YFG RF+G M+P TVE E A + L D +E+ + GRTD+G
Sbjct: 3 LAIRFSYFGDRFFG----SQMQPGLRTVEGEFIAACRRLGLF-EDWREAGFVTAGRTDRG 57
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV + + E +R LNRVLP+DI W+
Sbjct: 58 VHARCQVCSFF-----------------------TEKPDRAIRSLNRVLPEDIWCTAWAG 94
Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRH 270
P F R+S +SR Y+YFF+ N++ M A +FVG HDF F + A + +R+
Sbjct: 95 VPDRFHPRYSAMSRTYRYFFFPVPGNVALMHEAAGEFVGRHDFSAFAR---AGGRDPERN 151
Query: 271 VTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
V S + FE ++ G +FLW+ VR M L +G+G + I LL
Sbjct: 152 VLSARV------FENGPFAVFEVTGVSFLWNMVRGMATALERVGRGEADVGDIARLLAEP 205
Query: 331 GIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359
R P AP LVL + G+ FT
Sbjct: 206 PGRRLPA---APPEGLVLWDISY-GIPFT 230
>gi|386002925|ref|YP_005921224.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
gi|357210981|gb|AET65601.1| tRNA pseudouridine synthase A [Methanosaeta harundinacea 6Ac]
Length = 269
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/268 (28%), Positives = 126/268 (47%), Gaps = 40/268 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VA K+ Y G+ ++GF PTV++ + +AL + + + GRTD+GVS+
Sbjct: 3 VAFKLGYLGRGYHGFQLQ-PAAPTVQAVVGRALRSLGI-----NDGSFCYAGRTDRGVSA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQVI Y+ + + ++ RV+N LP D+ W+P P
Sbjct: 57 LGQVIDFYV--------------------QPAKADLAVPRVVNSRLPTDVWAWAWAPVPE 96
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
+FSAR + + REY+Y L+L AM A + +G HDFRN + + R++
Sbjct: 97 NFSARHAALWREYRYHLPGGGLDLEAMREAAGELLGVHDFRN---LSSEKRGPSIRNLMK 153
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
+++ E + I +R FLW+ VR M VL ++G G + +E+LLD P
Sbjct: 154 LDLT------EERGIVVIDVRADGFLWNMVRKMAKVLELVGSGDRDLAWVEALLD----P 203
Query: 334 RKPQ-YNMAPEIPLVLQSCDFDGLKFTC 360
R + AP LV+ + G+ +
Sbjct: 204 RTNRGVAPAPAEGLVMMDVGYPGVNWNI 231
>gi|298674065|ref|YP_003725815.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
gi|298287053|gb|ADI73019.1| tRNA pseudouridine synthase A [Methanohalobium evestigatum Z-7303]
Length = 277
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 122/268 (45%), Gaps = 42/268 (15%)
Query: 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
K+ +ALK+ Y G ++G + PT+E E+FK+L K ++ D K +++ GRTD
Sbjct: 1 MKKRMALKLAYIGTEYHGSQVQPEL-PTIEGELFKSL-KNLEIIDDPKSANFVSSGRTDT 58
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV S+GQV+ +T+N + RV+N LP+ I ++
Sbjct: 59 GVHSLGQVVTF---------DTDNPRLAVP-------------RVINSQLPESIWAWAYA 96
Query: 210 PAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKR 269
P +F+ R SR Y Y E ++S + +A K +G HDF NFC K
Sbjct: 97 VVPDEFNPRHGAFSRRYLYIMSGEEYDISRIRTASKYLIGTHDFANFCT-------PVKG 149
Query: 270 HVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
T + I +G L I I+ +FLW VR +V L M+G G + +E +L+
Sbjct: 150 KSTVRTVQRINIRVKGT-LTLIDIQADSFLWKMVRKIVTALMMVGYGTRDTEWLEQMLNP 208
Query: 330 ----NGIPRKPQYNMAPEIPLVLQSCDF 353
GI P Y L+L+ D+
Sbjct: 209 EYYEEGIEPAPSYG------LILKDVDY 230
>gi|308159447|gb|EFO61978.1| Pseudouridine synthase, putative [Giardia lamblia P15]
Length = 351
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 121/256 (47%), Gaps = 34/256 (13%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK--KESHYSRCGRTDKGVS 152
AL V + G F G A + TVE +F+ L++ L ++ ++ R GRTD GVS
Sbjct: 4 ALLVAFNGAAFRGNAYQPTRDSTVERALFEGLQRIGYLKENETIRDIELERTGRTDAGVS 63
Query: 153 SVGQVIAIYLR---SNIKECNTNNASMGETVQEEQIEDEIDYVRV----------LNRVL 199
+ + + L ++ +N ++ IE YV LNRVL
Sbjct: 64 AECMLYTVRLSKIIPDVPHLPPHNPRALGALEAFPIESSSIYVHTSGIATCLVFHLNRVL 123
Query: 200 PKDIRVIGWSPA-PTDFSARFSCISREYKYFF-------WRENLNLSAMESAGKKFVGEH 251
P +RV+G A P DFSAR SC++REY+Y RE N SA ++F+G +
Sbjct: 124 PSQVRVLGLLTAIPKDFSARHSCVAREYEYILGYNIPPHLREKAN-----SAARRFLGSN 178
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
F NFC + + Y R + E+ +E +C + GSAFL+HQVR M ++L
Sbjct: 179 SFHNFCHHEKDHKTVYNRQIYCSEV------YEHENVCIFHVIGSAFLYHQVRYMASMLV 232
Query: 312 MIGQGLESIDVIESLL 327
I GLE IE LL
Sbjct: 233 HIMAGLERESAIEYLL 248
>gi|52548278|gb|AAU82127.1| pseudouridylate synthase [uncultured archaeon GZfos10C7]
Length = 284
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 138/274 (50%), Gaps = 34/274 (12%)
Query: 91 KRYVALKVMYFGQRFYGFA-SDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
K +ALK+ Y G ++GF + PT+E E+FKAL+K + ++ D+K ++YS GRTD
Sbjct: 7 KERIALKIGYIGTNYHGFQIQPRSALPTIEGELFKALKK-QGIIEDRKTANYSAAGRTDT 65
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPK-DIRVIGW 208
GV ++ QV++ ++ SN NT R++N VLP I V
Sbjct: 66 GVHALAQVVS-FVTSN---QNTTP-------------------RMINSVLPDGSIWVSAI 102
Query: 209 SPAPTDFSARFSCISREYKYFFWRE---NLNLSAMESAGKKFVGEHDFRNFCKMDAANVH 265
+ + F+AR ISREY+Y+ + + +L+++ M A + FVG HDF NF + N +
Sbjct: 103 AKPYSGFNARRDAISREYRYYLFLQTELDLDITRMREASELFVGTHDFSNFSLLQ-GNEY 161
Query: 266 NYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIES 325
+ T +I + + I I S FL VR +V+ L M+G G++ IE
Sbjct: 162 EVAGYSTIRDIKRIEVKTK-KPFVIIDIEASGFLRKMVRKIVSALRMVGSGMKDKRWIED 220
Query: 326 LLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359
LLD + K AP LVL++ + +KF
Sbjct: 221 LLD---LRIKEGIEPAPAFGLVLKNVSYRDVKFV 251
>gi|21227597|ref|NP_633519.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452210068|ref|YP_007490182.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
gi|34395892|sp|Q8PWT1.1|TRUA_METMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|20905982|gb|AAM31191.1| tRNA pseudouridine synthase A [Methanosarcina mazei Go1]
gi|452099970|gb|AGF96910.1| tRNA pseudouridine synthase A [Methanosarcina mazei Tuc01]
Length = 269
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 123/252 (48%), Gaps = 36/252 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G F+G ++E TVE E+FKAL R+ + K ++Y GRTD GV +
Sbjct: 3 VALKLAYIGTEFHGSQIQPSVE-TVEKELFKALRNLRI-IESPKSANYICAGRTDAGVHA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQVIA +T+ ++ R++N LP I V + P
Sbjct: 61 LGQVIAF---------DTDRPNLA-------------IPRIINSGLPPTIWVWAHAEVPY 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF AR +SR Y+Y E ++S M A K +G HDF NF + + K V +
Sbjct: 99 DFDARRHAVSRHYRYVISGEGYDISKMREASKLLLGTHDFENFSRSNGE-----KSTVRT 153
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN--- 330
E + +G+ + I + G++FLW+ VR +V L MIG+G+ D + +L+ +
Sbjct: 154 LE--RINVRVDGD-ITKIDVVGNSFLWNMVRKIVTALSMIGKGVRDNDWLIQMLNPDIYE 210
Query: 331 -GIPRKPQYNMA 341
GI P Y +
Sbjct: 211 EGIEPAPAYGLT 222
>gi|432332241|ref|YP_007250384.1| pseudouridylate synthase I [Methanoregula formicicum SMSP]
gi|432138950|gb|AGB03877.1| pseudouridylate synthase I [Methanoregula formicicum SMSP]
Length = 280
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 121/272 (44%), Gaps = 49/272 (18%)
Query: 87 NHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
+H +A +V Y G RF+G + E TVE E A ++ L +D +++ + GR
Sbjct: 10 SHPAPVRLAFRVSYLGSRFFGSQMQVS-ERTVEGEFVAACQRLSLF-SDWRDAGFLFAGR 67
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TD+GV ++GQV A+ V E V +N LP D
Sbjct: 68 TDRGVHAIGQV----------------AAFSTDVPERA-------VATINLQLPPDCWCT 104
Query: 207 GWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHN 266
++ F R+ R Y+YFF R + AM A +FVG H+F +F +MD N
Sbjct: 105 AYAEVSPTFHPRYDAKKRTYRYFFSRAPPCIDAMAHAAARFVGSHNFSSFARMDGRN--- 161
Query: 267 YKRHVTSFEISPCYISF------EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
PC + EG +C +++ +FLWHQVRCM L IG+G E +
Sbjct: 162 -----------PCRTVYSARVLEEGGFVC-LEVTAESFLWHQVRCMATALLRIGEGEEDV 209
Query: 321 DVIESLLDTNGIPRKPQYNMAPEIPLVLQSCD 352
D+I+ LL P K + AP LVL D
Sbjct: 210 DLIDHLLTAE--PEK-ALSPAPAEGLVLWDTD 238
>gi|147919589|ref|YP_686671.1| tRNA pseudouridine synthase A [Methanocella arvoryzae MRE50]
gi|121687867|sp|Q0W2P8.1|TRUA_UNCMA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|110622067|emb|CAJ37345.1| tRNA pseudouridine synthase [Methanocella arvoryzae MRE50]
Length = 266
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 123/269 (45%), Gaps = 45/269 (16%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
ALK+ Y G FYG + + PTVESE+ KALE+ + K + + GRTD GV +
Sbjct: 3 TALKIAYVGTNFYGSQAQPGL-PTVESELRKALEEAGAI---KLGTKIAMAGRTDAGVHA 58
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQV+A EQ + ++ R++N LPKD+ + P
Sbjct: 59 LGQVVAF----------------------EQADPKLTAPRIINSKLPKDLWAYARAEVPD 96
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF R SREY+Y + ++ ++ +F+G HDF NF ++A R VT
Sbjct: 97 DFDPRRHATSREYRYILYAPDVIERRLKECSSRFLGTHDFTNFSSVEAGKYP--VRTVTR 154
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
+I+ + I I +FLW+ VR +V L ++G+ IE + D
Sbjct: 155 LDIA------KRGDFYIIDIEADSFLWNMVRKIVTALRLVGENKRPDGWIEKMFD----- 203
Query: 334 RKPQY--NMAPEIP--LVLQSCDFDGLKF 358
P+Y + P P L L ++DG+ F
Sbjct: 204 --PEYREGIPPAAPGGLYLSRVNYDGIAF 230
>gi|333986897|ref|YP_004519504.1| tRNA pseudouridine synthase A [Methanobacterium sp. SWAN-1]
gi|333825041|gb|AEG17703.1| tRNA pseudouridine synthase A [Methanobacterium sp. SWAN-1]
Length = 271
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 137/302 (45%), Gaps = 44/302 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VA KV Y G FYGF N TVE E+ A +K L+ D K S YS GRTD+GV +
Sbjct: 4 VAFKVAYIGTDFYGFQRQPNRR-TVEEELLNAFKKANLM-DDPKSSRYSIAGRTDRGVHA 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G V++ S + + +N L +I++IG + P
Sbjct: 62 MGNVVSFVTDSKV------------------------IINQINDYLVDEIQIIGKAEVPY 97
Query: 214 DFSARFSCISREYKYFFWRE-----NLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYK 268
+F RF+ SR Y+Y + +L+++ M A K F G H+F NF K N +
Sbjct: 98 NFKPRFAE-SRYYRYVLVDDPLDGRDLDVNKMIKASKIFEGTHNFSNFSK---RNERSPI 153
Query: 269 RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLD 328
R + I E L + + G +FLW+ VR MVAVL +G+G ++ + LL
Sbjct: 154 RTIEDINI------IEKKGLIMVDVVGESFLWNMVRRMVAVLLKVGRGQMELNEVAELL- 206
Query: 329 TNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHE 388
N I P + + P+ L+L +DG++F A L+ E + AA+ E
Sbjct: 207 -NSISYAPIFLVPPD-GLILMDVKYDGVEFEYDRYARKKFLKTLKTEYLQKKTIAAVQKE 264
Query: 389 AL 390
+
Sbjct: 265 MM 266
>gi|336476042|ref|YP_004615183.1| tRNA pseudouridine synthase A [Methanosalsum zhilinae DSM 4017]
gi|335929423|gb|AEH59964.1| tRNA pseudouridine synthase A [Methanosalsum zhilinae DSM 4017]
Length = 271
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/265 (29%), Positives = 125/265 (47%), Gaps = 39/265 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ALK+ Y G ++G +++ TVE ++F+ALE + ++D ++Y+ GRTD V +
Sbjct: 3 IALKLAYIGSDYHGSQVQPDVD-TVEGQLFRALENLGI-ISDPHSANYASAGRTDASVHA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+A + N ++ RV+N LP+ I + P
Sbjct: 61 AGQVVAF-------DTEAPNLAIP---------------RVINSKLPESIWAWAHAEVPD 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF R + +R Y+Y EN+++S + +A + F G HDF NFC D N R V
Sbjct: 99 DFDPRRNAKTRSYRYIMSGENIDISKIRAASRYFTGTHDFLNFCTNDGD--RNTVRTVNR 156
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT---- 329
+I IS L I I FLW+ VR +V L M+G G+ I+ ++ +LD
Sbjct: 157 IDIR---IS---GPLVKIDIDADGFLWNMVRKIVTALRMVGSGVRDIEWVKQMLDPATYE 210
Query: 330 NGIPRKPQYN---MAPEIPLVLQSC 351
GI Y M + P+ ++ C
Sbjct: 211 EGIEPAKAYGLTLMNVDYPMPIEWC 235
>gi|303391559|ref|XP_003074009.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC
50506]
gi|303303158|gb|ADM12649.1| tRNA pseudouridine synthase A [Encephalitozoon intestinalis ATCC
50506]
Length = 317
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 122/246 (49%), Gaps = 28/246 (11%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKT----R 130
+++ KEK T +R VAL++ Y G+R+ G A E TV + AL+ T +
Sbjct: 18 ERRSKEKQRKTFQCLSRRTVALRISYDGRRYSGMAPQSGKE-TVGGHLENALKFTGLGEK 76
Query: 131 LLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID 190
L+ A GRTD GVS++ V++ S I+ N + V E E
Sbjct: 77 LVYA----------GRTDAGVSAISMVVSGVFISRIEMPNRS------YVVTESDYKEYK 120
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
Y +LN LP DIRVIGW+P P FSARF+CI R+Y+Y+F +E+L+ M +
Sbjct: 121 YDMILNSHLPSDIRVIGWAPVPDTFSARFTCIQRQYRYYFHKEDLDADRMREMASRIKKM 180
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
+F F K N Y+R ++ C I EG+ + + IR AFL + VR +V +
Sbjct: 181 ENFYYFSKHSDKNAR-YER-----KLDECRIVDEGD-VYYLDIRARAFLHNMVRKIVWAI 233
Query: 311 FMIGQG 316
G+G
Sbjct: 234 QKAGKG 239
>gi|410722308|ref|ZP_11361613.1| pseudouridylate synthase I [Methanobacterium sp. Maddingley MBC34]
gi|410597279|gb|EKQ51909.1| pseudouridylate synthase I [Methanobacterium sp. Maddingley MBC34]
Length = 274
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 128/274 (46%), Gaps = 53/274 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALKV Y G FYGF N+ TVE E+ AL+K+ +++ +S+YS GRTD+GV +
Sbjct: 4 VALKVAYLGTDFYGFQRQPNLR-TVEGELISALKKSGA-ISNLGQSNYSIAGRTDRGVHA 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G V++ + D+ + +N +LP DIR++G P
Sbjct: 62 LGNVVSF------------------------LTDKEPIINQVNDLLPMDIRILGSCRVPL 97
Query: 214 DFSARFSCISREYKYFFWR----ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKR 269
F R++ R Y+Y R + ++ M+ A G H+F NF + N N R
Sbjct: 98 GFKTRYAH-KRHYRYVLCRKVGEDEWDVDKMQGAAHLMEGTHNFLNFSR---RNERNPMR 153
Query: 270 HVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
V S + NQ+C + + G +FLW+ VR M+ VL +G+ I+ ++ D
Sbjct: 154 KVDSVRFT------SKNQVCLVDVEGESFLWNMVRKMMTVLISVGKHEMGIEDVKKCFD- 206
Query: 330 NGIPRKPQYN-----MAPEIPLVLQSCDFDGLKF 358
P+YN M PE L+L G+KF
Sbjct: 207 ------PEYNASITPMPPE-SLILMDVLHQGVKF 233
>gi|15678860|ref|NP_275977.1| tRNA pseudouridine synthase A [Methanothermobacter
thermautotrophicus str. Delta H]
gi|3915162|sp|O26928.1|TRUA_METTH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2621931|gb|AAB85338.1| pseudouridylate synthase I [Methanothermobacter thermautotrophicus
str. Delta H]
Length = 275
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 131/277 (47%), Gaps = 45/277 (16%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R +ALKV Y G ++GF ++ PTVE ++ +ALE + + D K + + GRTD+GV
Sbjct: 2 RKIALKVAYIGTNYHGFQRQPDV-PTVEGKLLEALEGAGI-IEDPKRARFQIAGRTDRGV 59
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++G ++ + +I +V +N +LP+DIRV+ W+
Sbjct: 60 HALGNFVSFFTEEDI------------------------HVNQINDLLPRDIRVLAWASV 95
Query: 212 PTDFSARFSCISREYKYFFWRE-NLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRH 270
F R+ + R Y+Y RE +++ +M A F G HDF NF + ++ +R
Sbjct: 96 MYPFKVRYP-LERHYRYILHREESMDTYSMAEAAAHFRGTHDFSNFSR--RSDRDPVRR- 151
Query: 271 VTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
I+ IS G+ + I + G +FLW VR MV L M+ +G + D + LLDT+
Sbjct: 152 -----INDVRISEVGDSII-IDVYGESFLWQMVRKMVRALLMVSEGELAPDDMAGLLDTD 205
Query: 331 GIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
R+ P L+L LK+ + HD
Sbjct: 206 ---RRVFLEPMPPENLILMD-----LKYGVKIKLRHD 234
>gi|375083694|ref|ZP_09730712.1| tRNA pseudouridine synthase A [Thermococcus litoralis DSM 5473]
gi|374741694|gb|EHR78114.1| tRNA pseudouridine synthase A [Thermococcus litoralis DSM 5473]
Length = 262
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 138/293 (47%), Gaps = 36/293 (12%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
+K+ Y G+RFYGF N+ TVE+EI + L K + + + K++++ RTD+GVS+ G
Sbjct: 1 MKIAYDGRRFYGFQRQPNLR-TVEAEIIRVLTKLGI-IENPKDANFKGASRTDRGVSAFG 58
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
V+A NT + E+ R+LN L +D+ V+G + P DF
Sbjct: 59 NVVAF---------NT-------------FKPELTSPRILNHHL-RDVWVLGRAQVPEDF 95
Query: 216 SARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFE 275
RF + Y+Y+ E ++ M+S + FVG HDF NF K++ N R + E
Sbjct: 96 HPRFWSKGKVYRYYLLNEGFDIEKMKSCAEIFVGVHDFSNFAKLEEDK--NPIRKIDRIE 153
Query: 276 ISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRK 335
+ + ++ +++ G +FLW VR ++ L + G SI+ ++ +L+ +
Sbjct: 154 V------LQRGKVITVEVEGESFLWEMVRRIITALKLCASGALSIEEVKRMLEEEVDKKL 207
Query: 336 PQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHE 388
P AP LVL +D + F A + + + A+IF +
Sbjct: 208 PP---APPENLVLWEVKYDEIFFEKDPYAVEKAKREFFERFAQHLITASIFED 257
>gi|253742628|gb|EES99427.1| Pseudouridine synthase, putative [Giardia intestinalis ATCC 50581]
Length = 351
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 138/302 (45%), Gaps = 30/302 (9%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK--KESHYSRCGRTDKGV 151
VAL + + G F G A TVE + L+K + ADK ++ R GRTD GV
Sbjct: 3 VALLIAFNGTAFCGNAFQPAGGLTVEGALLDGLQKLGYVKADKTIRDIGLERAGRTDAGV 62
Query: 152 SSVGQVIAIYLRSNIKECNT---NNASMGETVQEEQIEDEIDYVRVL----------NRV 198
S+ + + L +I E +N ++ +E Y+ + NRV
Sbjct: 63 SAECMLYTVCLSRSIPEAPQFPLHNPRTINGLKASPLEPSSIYISAMGPATCLVFHFNRV 122
Query: 199 LPKDIRVIGWSPA-PTDFSARFSCISREYKYFF-WRENLNL-SAMESAGKKFVGEHDFRN 255
LP IRV+G A P +FS R SC +REY+Y + L+L + SA ++F+G + F N
Sbjct: 123 LPPQIRVLGVMTALPENFSPRHSCAAREYEYILGYNIPLDLCTKANSAAQRFLGSNSFHN 182
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC + Y R V E+ + +C + GSAFL+HQVR M ++L I
Sbjct: 183 FCHWEKEQELVYNRQVYCSEV------YVRENVCIFHVVGSAFLYHQVRYMASMLAHIMA 236
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF-----DGLKFTCSLDAGHDLRL 370
GLE +IE LL T + + + + P L + C + F CS A +L
Sbjct: 237 GLERESIIEYLLTTEQLRPRRSFPLLPSQYLTFK-CGWYHPPMGSRSFYCSTKAYEELVK 295
Query: 371 HL 372
H+
Sbjct: 296 HV 297
>gi|315230173|ref|YP_004070609.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP]
gi|315183201|gb|ADT83386.1| tRNA pseudouridine synthase A [Thermococcus barophilus MP]
Length = 266
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 137/297 (46%), Gaps = 36/297 (12%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ALK+ Y G +FYGF + TVE EI + L+K + + + +++ RTD+GVS+
Sbjct: 3 IALKIAYDGSKFYGFQRQPGLR-TVEGEIIRVLQKLDV-IESPENANFKGASRTDRGVSA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G VIA NT N + + RVLN L +DI V+G +
Sbjct: 61 LGNVIAF---------NTENPKLAQP-------------RVLNHHL-RDIWVLGVAQVSD 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF RF S+ Y+Y+ E +++AM+ + FVG HDF F +++ + R V
Sbjct: 98 DFHPRFWAKSKIYRYYLVDEGFDVNAMKECARLFVGTHDFSAFARVE--KFKDPIREVNR 155
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
EI P L I+I G +FLW VR +V L + G G+ + I +L+
Sbjct: 156 LEIIP------RGDLIIIEIEGKSFLWEMVRRIVTALKLCGFGIVETEDIRKMLEGRTDK 209
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL 390
+ P +P LVL ++ + F + ++ + ++A +F + L
Sbjct: 210 KLPP---SPPENLVLWEIKYENIIFQIDEYSLRKIKQEFFERFSSFLVKAGMFKDWL 263
>gi|340507598|gb|EGR33533.1| tRNA pseudouridine synthase a family protein, putative
[Ichthyophthirius multifiliis]
Length = 133
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 79/134 (58%), Gaps = 6/134 (4%)
Query: 235 LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSF---EISPCYISFEGNQL--C 289
+N+ ++ A K F+GEHDFRN CK+D N+ R + EI+P + ++ +++
Sbjct: 1 MNVDKIKEAAKLFIGEHDFRNLCKIDVLQTTNFIRTIHFINIDEINPG-VQYQDSRMKQY 59
Query: 290 AIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQ 349
I G+AFLWHQ+R ++AVLF+IG+G E ++ LLD RKP Y MA E PLVL
Sbjct: 60 VATISGNAFLWHQIRNIMAVLFLIGKGQEDTSIVTDLLDIQKYSRKPNYEMASEFPLVLY 119
Query: 350 SCDFDGLKFTCSLD 363
C +D L F D
Sbjct: 120 DCQYDQLDFQYEKD 133
>gi|304314991|ref|YP_003850138.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
gi|302588450|gb|ADL58825.1| tRNA pseudouridine synthase A [Methanothermobacter marburgensis
str. Marburg]
Length = 273
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 132/277 (47%), Gaps = 45/277 (16%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R +ALKV Y G ++GF ++ PTVE ++ AL++ ++ + +S + GRTD+GV
Sbjct: 2 RKIALKVAYIGTNYHGFQRQPDV-PTVEGKLLDALKEAGVIRS-PGDSRFQIAGRTDRGV 59
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++G ++ + EE+I +V +N +LP DI+V+ W+
Sbjct: 60 HALGNFVSFF-------------------TEEEI-----HVNQINDLLPHDIKVLAWASV 95
Query: 212 PTDFSARFSCISREYKYFFWR-ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRH 270
F R+ + R Y+Y R E++++ AM A + F G HDF NF + N R
Sbjct: 96 MYPFKVRYP-LERHYRYILHRGESMDIDAMAKAAEHFRGTHDFSNFSR---RRDRNPIRK 151
Query: 271 VTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
+ +S E + + + G +FLW VR MV VL ++ +G S D + LLDT+
Sbjct: 152 INDVRVS------EDDNSILVDVYGESFLWQMVRKMVRVLLLVSEGELSPDDVPRLLDTD 205
Query: 331 GIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
+ + AP L+L LK+ + HD
Sbjct: 206 ---ERVFIDPAPPENLILMD-----LKYGVKIKLRHD 234
>gi|357017355|gb|AET50706.1| hypothetical protein [Eimeria tenella]
Length = 319
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
YV +LNR+LP DIRV+ + P F ARF C+ R YKYFF L++S M +A K+F+G
Sbjct: 18 YVPLLNRLLPPDIRVLAATQVPPTFDARFDCLFRVYKYFFGTAGLDISRMRAAAKQFLGM 77
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
H+F FCK+D + R + F+ + + + I G +FLWHQVR M+A L
Sbjct: 78 HNFLRFCKVDRKQERSLWRRIIRFD-----LELQEDGFGVATIVGVSFLWHQVRYMMAAL 132
Query: 311 FMIGQGLESIDVIESLL 327
+G+G + I +LL
Sbjct: 133 MEVGRGAWAAACISTLL 149
>gi|91773587|ref|YP_566279.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242]
gi|121691685|sp|Q12VJ7.1|TRUA_METBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|91712602|gb|ABE52529.1| tRNA pseudouridine synthase A [Methanococcoides burtonii DSM 6242]
Length = 275
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 36/237 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G F+G N +PTVE E+FK L++ ++ D + +++ GRTD GV +
Sbjct: 3 VALKIAYIGSNFHGSQVQLN-DPTVEGELFKVLKELGIM-EDPRTANFISSGRTDSGVHA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQV+A + + N +M RV+N LP I + P
Sbjct: 61 MGQVVAF-------DTDAPNLAMP---------------RVINSKLPGTIWAWAHAIVPE 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA--NVHNYKRHV 271
+F R +SR Y+Y + E ++S + SA K +G HDF NF + V KR
Sbjct: 99 NFDPRRHALSRSYRYILYGEQFDISKIRSASKLLLGSHDFSNFSTSRGSKKTVRIVKR-- 156
Query: 272 TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLD 328
I GN L I + ++FLW+ VR +VA L M+G G+ + + +LD
Sbjct: 157 -------IDIRVSGN-LTRIDVEANSFLWNMVRKIVAALMMVGSGVRDEEWLGHMLD 205
>gi|20089106|ref|NP_615181.1| tRNA pseudouridine synthase A [Methanosarcina acetivorans C2A]
gi|30913395|sp|Q8TU65.1|TRUA_METAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|19913971|gb|AAM03661.1| pseudouridylate synthase [Methanosarcina acetivorans C2A]
Length = 269
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 119/252 (47%), Gaps = 36/252 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G F+G N+E TVE E+FKAL + ++ K + Y+ GRTD GV +
Sbjct: 3 VALKLAYIGTEFHGSQIQPNVE-TVEKELFKAL-RNLSIIESPKSADYTCAGRTDAGVHA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQV+A +T ++ RV+N LP I + P
Sbjct: 61 LGQVVAF---------DTEKPNLA-------------IPRVINSELPPAIWAWAHAEVPY 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
F AR S +SR Y Y E+ ++S M A K +G HDF NF + + K V +
Sbjct: 99 YFDARRSAVSRHYHYVMSGEDYDISKMREASKLLLGTHDFENFSRSNGE-----KSTVRT 153
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT---- 329
E + +G ++ I + G++FLW+ VR +V L MIG G+ D + +L+
Sbjct: 154 LE--RINVRVDG-EITKIDVVGNSFLWNMVRKIVTALSMIGNGVRDNDWLLQMLNPEIYE 210
Query: 330 NGIPRKPQYNMA 341
GI P Y +
Sbjct: 211 EGIEPAPPYGLT 222
>gi|307352726|ref|YP_003893777.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM
11571]
gi|307155959|gb|ADN35339.1| tRNA pseudouridine synthase A [Methanoplanus petrolearius DSM
11571]
Length = 261
Score = 111 bits (277), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 114/255 (44%), Gaps = 37/255 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+A V Y G FYG + TVE E A L +D +++ + GRTD GV +
Sbjct: 3 IAFLVSYIGTDFYGSQQQPGIR-TVEGEFIGACIDLGLF-SDWRDARFQFSGRTDAGVHA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
Q+ A +T E+ V +NR LP DIR GW+ P
Sbjct: 61 RSQICAF-----------------DTDYPERA------VSAINRKLPGDIRCRGWAGVPE 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
F+ RF R Y+YFF NL+ M A + G HDF F +++ N +R +
Sbjct: 98 GFNPRFEVSERIYRYFFPDGNLDWGKMSLAAEYLPGVHDFSRFARVEGKNP---ERKIFL 154
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
EI P + +IRG +FLW+ VRC+ L+++G G ES +VI + L P
Sbjct: 155 AEIIP------DKEGIIFEIRGESFLWNMVRCISHALWLVGSGSESPEVISAALSNTDGP 208
Query: 334 RKPQYNMAPEIPLVL 348
R P AP LVL
Sbjct: 209 RFPA---APPEGLVL 220
>gi|374628788|ref|ZP_09701173.1| tRNA pseudouridine synthase A [Methanoplanus limicola DSM 2279]
gi|373906901|gb|EHQ35005.1| tRNA pseudouridine synthase A [Methanoplanus limicola DSM 2279]
Length = 260
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 117/250 (46%), Gaps = 36/250 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+A K+ YFG F+G N TVE E A L + D+K S +S GRTD+GV +
Sbjct: 3 IAFKLGYFGDNFHGSQQQSNRR-TVEGEFITACIDLGL-IRDRKSSGFSISGRTDRGVHA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
Q+ + + T E+ V +N LP DI ++
Sbjct: 61 RCQICSFF-----------------TDHPERA------VFAINEKLPGDIWCFAYAEVDD 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
++ R+ SR+Y+Y+F+ E L+ +M+ A + G HDF +F K+ + +R +
Sbjct: 98 SYNPRYDVFSRKYRYYFYEEGLDHESMQKASQYIKGVHDFTSFAKIKGKDP---ERKILE 154
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
E+ F + +I G +FLW+ VRC+ L + G+GL S + I S L+ G+P
Sbjct: 155 SEV------FTDGEYTVFEIEGHSFLWNMVRCLAYALNLCGKGLLSPEEIRSALENPGMP 208
Query: 334 RKPQYNMAPE 343
R P M PE
Sbjct: 209 RYPA--MPPE 216
>gi|288560959|ref|YP_003424445.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium
M1]
gi|288543669|gb|ADC47553.1| tRNA pseudouridine synthase A TruA [Methanobrevibacter ruminantium
M1]
Length = 290
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/316 (27%), Positives = 137/316 (43%), Gaps = 48/316 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
ALK+ Y G F+GF ++ TVE E+ L K + D K S + GRTD GV S
Sbjct: 4 TALKIAYIGTHFHGFQRQPDVR-TVEEELIYHLRKLEY-IDDLKASRFRIAGRTDAGVHS 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G VI+ ++ NN+ LP DI++I W+P
Sbjct: 62 LGNVISFQSEKEVRVNQINNS------------------------LPDDIQIIAWAPVRF 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
F RF+ R Y+Y + E+L++ + + F G HDF NF K R +
Sbjct: 98 GFKPRFAK-RRWYRYILFEEDLDIDLLRKTAEVFKGTHDFTNFTKRKQKTT---VRTIED 153
Query: 274 FEISPCYISFEGNQLCA-------------IKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
I+ I E + + I G +FLW+ VR M+ + + G ++
Sbjct: 154 IRITKPIIDEEDKNKKSDFAHLNKSYSPIFVDIYGESFLWNMVRKMMRIFLDVNYGKLTL 213
Query: 321 DVIESLLDT-NGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVY 379
D +E LL+ G PR + E L+L +++G++F A R +L + ++
Sbjct: 214 DDVERLLNPEEGEPRAYIKVVDAE-NLILMDIEYEGIRFRYDDYACERFRRYLID--NLF 270
Query: 380 QLQAAI-FHEALLNCL 394
+LQ E++LNCL
Sbjct: 271 ELQKTYSITESMLNCL 286
>gi|154149764|ref|YP_001403382.1| tRNA pseudouridine synthase ACD [Methanoregula boonei 6A8]
gi|153998316|gb|ABS54739.1| tRNA pseudouridine synthase A [Methanoregula boonei 6A8]
Length = 276
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/260 (31%), Positives = 116/260 (44%), Gaps = 39/260 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+A +V Y G RFYG + TVE E +A + L +D + + ++ GRTD+GV +
Sbjct: 17 LACRVSYLGTRFYGSQQQESSR-TVEGEFIEACRRLALF-SDWRTAGFASAGRTDRGVHA 74
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQVIA Q D + LN LP DI + P
Sbjct: 75 CGQVIAF---------------------STQTPDRAR--QALNSQLPPDIWCTATAVVPD 111
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
F R+ SR Y+Y+F + AME+A ++F G+H+F NF ++ N
Sbjct: 112 HFHPRYDARSRTYRYYFGEPPRDPVAMETAAREFSGDHNFTNFARVGDKNPWR------- 164
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLL-DTNGI 332
+I I EG+ ++++ +FLWHQVRCM A G G + D I LL +
Sbjct: 165 -KILEIRIGTEGS-FTYLEVKAQSFLWHQVRCMAAAALSAGMGEQDADGIRLLLNEAASR 222
Query: 333 PRKPQYNMAPEIPLVLQSCD 352
P +P AP LVL D
Sbjct: 223 PIQP----APAEGLVLWDTD 238
>gi|284161452|ref|YP_003400075.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
gi|284011449|gb|ADB57402.1| tRNA pseudouridine synthase A [Archaeoglobus profundus DSM 5631]
Length = 262
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 122/265 (46%), Gaps = 38/265 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+A K+ Y G F+GF N+ TV E+FKA R L D K++ + GRTD GV +
Sbjct: 3 IAYKLAYVGTNFHGFQYQPNVR-TVAGELFKAF---RALGIDPKKAKFRCAGRTDAGVHA 58
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQVIAI + I + R+ N LP+D+ W+
Sbjct: 59 FGQVIAINVEKPI------------------------FPRMFNAHLPEDVTFWAWTEVDE 94
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
F+ R SR Y Y E ++SAM A K +G HDF NF K R + +
Sbjct: 95 KFNPR-HAKSRTYVYVMPAEGYDISAMRKASKLLLGTHDFSNFTK-KFGERRRCIRTIYN 152
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
E+ + ++I G+AF W+ VRC+V+ L +G G S++ E +L N
Sbjct: 153 VELR------LDDGFVVLEIVGNAFTWNMVRCIVSALREVGSGHRSVEWFEDML--NPER 204
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKF 358
+ + AP L+L+ +++G++F
Sbjct: 205 HRERIEPAPAYGLILKDVEYEGIEF 229
>gi|337283917|ref|YP_004623391.1| tRNA pseudouridine synthase A [Pyrococcus yayanosii CH1]
gi|334899851|gb|AEH24119.1| tRNA pseudouridine synthase A [Pyrococcus yayanosii CH1]
Length = 266
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/302 (28%), Positives = 136/302 (45%), Gaps = 47/302 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VAL++ Y G +F+GF ++ TVE E+ + LE+ L D + RTDKGVS+
Sbjct: 3 VALRIAYDGTQFHGFQRQPSLR-TVEGELLRVLEEVGLEPVD-----FKGASRTDKGVSA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
G V+A + + RVLN L +D+ V+G + P
Sbjct: 57 FGNVVAFTVPDDAAHLVKP--------------------RVLNARL-EDVWVLGVAKVPK 95
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF RF S+ Y+Y+ LN+ AM FVGEHDF F ++D + R +
Sbjct: 96 DFHPRFWAKSKVYRYYLVGWGLNVGAMRECAALFVGEHDFSAFARLDG---RDPVRRILR 152
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLL-----D 328
+ E + ++I G +FLW VR +V + + G+G + +E++L +
Sbjct: 153 ASVE------ERGPIVVVEIEGESFLWEMVRRIVTAVRLCGEGKLELGDVEAMLRGEFEE 206
Query: 329 TNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHE 388
+ +P P PE LVL + ++G++F +R L ++AAIF +
Sbjct: 207 SRKLPPAP-----PE-GLVLWAVKYEGVEFEVDAYTVELVRKELFERFSAAAVRAAIFED 260
Query: 389 AL 390
L
Sbjct: 261 FL 262
>gi|73668859|ref|YP_304874.1| tRNA pseudouridine synthase A [Methanosarcina barkeri str. Fusaro]
gi|121729516|sp|Q46CU8.1|TRUA_METBF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|72396021|gb|AAZ70294.1| pseudouridylate synthase [Methanosarcina barkeri str. Fusaro]
Length = 269
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 118/252 (46%), Gaps = 36/252 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G F+G N+E TVE E+FKAL + ++ K ++Y+ GRTD GV +
Sbjct: 3 VALKLAYIGTEFHGSQIQPNVE-TVEGELFKAL-RNLGIIESPKSANYTCAGRTDAGVHA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ QV+A +T+ ++ RV+N L I V + P
Sbjct: 61 LEQVVAF---------DTDKLNLA-------------IPRVINSELTPGIWVWAHAEVPL 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
F AR +SR Y+Y + ++S + A K +G HDF NF + + K V +
Sbjct: 99 SFDARRDAVSRHYRYVMSGKEYDISKIREASKFLLGTHDFENFSRTNGE-----KSTVRT 153
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT---- 329
E I E L I + G++FLW+ VR +V L MIG+G+ D + +L+
Sbjct: 154 IERIDARIDGE---LIKIDVVGNSFLWNMVRKIVTALSMIGKGVRDTDWLLQMLNPEIYE 210
Query: 330 NGIPRKPQYNMA 341
GI P Y +
Sbjct: 211 EGIESAPAYGLT 222
>gi|401828224|ref|XP_003888404.1| tRNA pseudouridine synthase domain-containing protein
[Encephalitozoon hellem ATCC 50504]
gi|392999676|gb|AFM99423.1| tRNA pseudouridine synthase domain-containing protein
[Encephalitozoon hellem ATCC 50504]
Length = 314
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 120/235 (51%), Gaps = 27/235 (11%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL---LVADKKESHYSRCGRT 147
+R VALK+ Y GQ + G S N + T+ + AL+ T L LV GRT
Sbjct: 35 QRTVALKISYDGQGYSGL-SPQNGKETIGGNLEYALKATGLGEKLVY---------AGRT 84
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D GVS++ + + + S + E N + ++ E+ E Y +LN LP DIRVIG
Sbjct: 85 DAGVSAINMIASCVVISRVLEPNRS-----YSITEDDYR-EYKYDIMLNNHLPSDIRVIG 138
Query: 208 WSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNY 267
W+P P F+ARF+C+ R+Y+Y+F +E LN++ M A + +F F K N
Sbjct: 139 WAPVPDTFNARFTCVQRQYRYYFHKEGLNINEMNEAASRIKRMENFYYFSKHSDENARYE 198
Query: 268 KRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322
+R + C + +G+ + + IR AFL + VR +V + G+G E+ D+
Sbjct: 199 RR------LDECRVVDDGD-IYYLDIRARAFLHNMVRKIVWAIQKSGRG-EAYDI 245
>gi|88603643|ref|YP_503821.1| tRNA pseudouridine synthase ACD [Methanospirillum hungatei JF-1]
gi|88189105|gb|ABD42102.1| tRNA pseudouridine synthase A [Methanospirillum hungatei JF-1]
Length = 276
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 33/227 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+A ++ Y G F+G + TVE EI A + ++ + ++ S + GRTD+GV +
Sbjct: 13 LAFRIGYIGTSFFGSQYQPDQR-TVEGEIEAACLRAGIITS-RQVSRLALSGRTDRGVHA 70
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
Q++A+ +T+N + VR LN LP DI V W+ AP
Sbjct: 71 KCQILAL---------STHNPDLA--------------VRALNGQLPPDIWVSAWAYAPE 107
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
F R+ I R Y+Y+F R +++AM A F+G HDFR F +++ + + +
Sbjct: 108 SFYPRYDVIIRTYRYYFSRPPSDINAMRDAAGLFLGTHDFRCFARIEPGK--SPVKTIDR 165
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
E+ IS E C +++ +FLWH VRCM L+ + +G +I
Sbjct: 166 IEV----ISDENG--CRLEVTAQSFLWHMVRCMAGSLYQVSEGEMAI 206
>gi|294494718|ref|YP_003541211.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
gi|292665717|gb|ADE35566.1| tRNA pseudouridine synthase A [Methanohalophilus mahii DSM 5219]
Length = 273
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 139/308 (45%), Gaps = 49/308 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
VALK+ Y G + G ++P T+E +IF+AL+ + + D + + GRTD G
Sbjct: 3 VALKIAYIGSSYRG----SQVQPGVSTIEGKIFEALQSLEI-IEDPSSARFVSSGRTDTG 57
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V ++GQV+A +T+ + RV+N LP DI +
Sbjct: 58 VHAMGQVVAF---------DTDKPKLA-------------IPRVINSKLPGDIWAWSRAE 95
Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRH 270
+DF R I+R Y+Y + ++S + +A G HDF NFC D
Sbjct: 96 VDSDFHPRRYAINRTYRYITPSMDADISKLRAACSILEGSHDFANFCFRDTG-------R 148
Query: 271 VTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
T I + GN L I I ++FLW +R +V VL ++G G +D +E++LD
Sbjct: 149 STIRRIEKIDVRLAGN-LLRIDITANSFLWKMIRKIVTVLLLVGSGARDLDWLENMLD-- 205
Query: 331 GIPRKPQYNMAPEIP--LVLQSCDF-DGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFH 387
P + + P P L+L + ++ D +++ +D G+ +R R + Y + +
Sbjct: 206 --PASYEEGIKPAKPYGLILTNVNYGDSVQW---VDDGYSMR-RSRERIEEYLVYHQVLA 259
Query: 388 EALLNCLP 395
E + LP
Sbjct: 260 EVMDQFLP 267
>gi|11499319|ref|NP_070558.1| tRNA pseudouridine synthase A [Archaeoglobus fulgidus DSM 4304]
gi|3915163|sp|O28544.1|TRUA_ARCFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2648818|gb|AAB89516.1| pseudouridylate synthase I (truA) # [Archaeoglobus fulgidus DSM
4304]
Length = 265
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 121/266 (45%), Gaps = 44/266 (16%)
Query: 95 ALKVMYFGQRFYG--FASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVS 152
A K+ YFG F+G F D + TVE E+ AL RL V + + GRTD GV
Sbjct: 5 AFKIAYFGDNFHGSQFQPD---QRTVEGEVINALR--RLGVENPR---LRSAGRTDAGVH 56
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQVI+ Y ED+I + R+LN LP+DI W+
Sbjct: 57 AYGQVISFYS-----------------------EDKI-FPRMLNAELPEDITAWAWAKVS 92
Query: 213 TDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVT 272
DF R SR Y Y + + ++SAM A K+ +G HDF NF K + R +
Sbjct: 93 EDFDPR-RAKSRVYTYVMYGSDYDISAMRKAVKELIGVHDFSNFTKKFGEG-ESCVREII 150
Query: 273 SFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI 332
S +I + +I G+AF W+ VRC+V + IG+ SI+ LL N
Sbjct: 151 SADIRA------DREFIIFEIEGNAFTWNMVRCIVTAIMEIGKQHRSIEWFRDLL--NPE 202
Query: 333 PRKPQYNMAPEIPLVLQSCDFDGLKF 358
K + AP L+L+ +D ++F
Sbjct: 203 KHKERVEPAPPYGLILKDVKYDDVEF 228
>gi|325959678|ref|YP_004291144.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21]
gi|325331110|gb|ADZ10172.1| tRNA pseudouridine synthase A [Methanobacterium sp. AL-21]
Length = 271
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 69/299 (23%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE-SHYSRCGRTDKGVS 152
+A KV Y G ++GF N+ PT+E E+ +A +K+ ++D E S YS GRTD+GVS
Sbjct: 4 IAFKVAYIGTDYHGFQRQPNL-PTIEGELLRAFKKSG--ISDSPEKSDYSIAGRTDRGVS 60
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
++G V+ L+++ K+ N +N LP +IR+IG +
Sbjct: 61 ALGNVVC--LKTD-KDVTINR---------------------INYYLPSNIRIIGSTMVS 96
Query: 213 TDFSARFSCISREYKYFFWRE----NLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYK 268
F R++ + R Y+Y + LNL M+ A K+ G+H++ NF K +
Sbjct: 97 NGFKPRYAKL-RHYRYILDKSLCPNTLNLKLMKQAAKQMEGKHNYINFSKRSE---RAPE 152
Query: 269 RHVTSFEI--SPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
R V S ++ +P I F+ + G +FLW+ VR MV VL M G+ +++ +E+L
Sbjct: 153 RMVYSVDLVETPDNIVFD--------VVGESFLWNMVRKMVKVLVMFGREELTLENLETL 204
Query: 327 LDTNGIPRKPQYNMAPEIP----------LVLQSCDFDGLKFTCSLDAGHDLRLHLRNE 375
+ P++P L+L +DG++F C A ++ L+ E
Sbjct: 205 FN-------------PDVPAAIKPVASDGLILMDVVYDGIEFPCEGYAVNNFMKTLKQE 250
>gi|261350284|ref|ZP_05975701.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374]
gi|288861068|gb|EFC93366.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2374]
Length = 288
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 143/327 (43%), Gaps = 63/327 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
ALK+ Y G F+GF ++ TVE E+ L K + D K+S + GRTD GV S
Sbjct: 4 TALKIGYIGTNFHGFQRQPDLR-TVEEELIYHLRKLGY-IDDLKKSRFRIAGRTDAGVHS 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G VI+ ++ NN+ LP DI+++ +P
Sbjct: 62 LGNVISFQSEKEVRVNEINNS------------------------LPDDIQILAKAPVRF 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFC--------------KM 259
F R++ + R+Y+Y +R +L+L + + F G H+F NF K+
Sbjct: 98 GFKPRYAEM-RQYRYVLFRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQKTTTRTIDDIKI 156
Query: 260 DAANVHNYKRHVTSFE-----ISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
AN+++Y H F +SP ++ I G +FLW+ VR M+ V +
Sbjct: 157 TKANLNDY--HKKEFPNLHDTLSPVFVD----------IYGESFLWNMVRKMMRVFVDVA 204
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIP--LVLQSCDFDGLKFTCSLDAGHDLRLHL 372
G S++ +E LL N P+ N+ P L+L +DG+KF A + +L
Sbjct: 205 IGKLSLEKVEELL--NPAENDPRANIKVLDPDYLILMDIKYDGVKFVYDDYACERFKRNL 262
Query: 373 RNECQVYQLQAAIFHEALLNCLPLANG 399
+ Q + AI E+++ L NG
Sbjct: 263 VDSLGDLQRKYAI-RESMIKSLDDLNG 288
>gi|300709217|ref|XP_002996775.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01]
gi|239606099|gb|EEQ83104.1| hypothetical protein NCER_100100 [Nosema ceranae BRL01]
Length = 313
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 34/243 (13%)
Query: 85 TLNHHFKRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVADKKESHYS 142
+NH R +AL + Y G+++ G A DG+ ++ + I AL + L AD H
Sbjct: 30 AINHVSYRTIALLISYHGEKYRGLAECKDGD---SIGNRIKNALLLSTL--AD----HIV 80
Query: 143 RCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTDKGVS++G V ++ ++S ++E NT+ + + E +Y +LN LP+D
Sbjct: 81 YAGRTDKGVSAIGMVASVKIKSLLRE-NTSRYFLNDDDNHE-----FNYQAILNNYLPED 134
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF----------WRENLNLSAMESAGKKFVGEHD 252
IRVIGW+P FSARF+CI R+Y+Y+F R +++ ME +K + +
Sbjct: 135 IRVIGWAPVEDGFSARFTCIKRKYRYYFTNPFVKIKNQIRLKYDINKMEEMCQKILTLKN 194
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
F N K H+ K + + C I EG+ L + I+ +FL + VR + VL M
Sbjct: 195 FYNLSK------HSDKSARYNRTVDICQIIKEGD-LYYLDIQAKSFLHNMVRKIFWVLEM 247
Query: 313 IGQ 315
G+
Sbjct: 248 AGK 250
>gi|396082522|gb|AFN84131.1| tRNA pseudouridine synthase A [Encephalitozoon romaleae SJ-2008]
Length = 312
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 121/244 (49%), Gaps = 20/244 (8%)
Query: 75 KKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA 134
KK +EK L +R VALK+ Y G+ + G S N T+ + AL+ T L
Sbjct: 19 KKMHQEKHKKALKCLSQRTVALKISYNGEGYSG-VSPQNGRKTIGGNLEYALKATGL--- 74
Query: 135 DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRV 194
GRTD GVS++ V + + S + E N + V + E Y +
Sbjct: 75 ---GEKLVYAGRTDSGVSAINMVASGVVISRVLEPNRS------YVITKDDHKEYKYDIM 125
Query: 195 LNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFR 254
LN LP DIRVIGW+P P F+ARF+CI R+Y+Y+F +E L+++ M A + ++F
Sbjct: 126 LNNYLPSDIRVIGWAPVPDTFNARFTCIQRQYRYYFHKEGLDINEMNQAASRIKDINNFY 185
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
F K N Y+R ++ C I +G+ + + I+ AFL + VR +V + G
Sbjct: 186 YFSKHSDKNAR-YER-----KLDECRIIDDGD-IYYLDIKARAFLHNMVRKIVWAVQKSG 238
Query: 315 QGLE 318
+G E
Sbjct: 239 KGEE 242
>gi|395644499|ref|ZP_10432359.1| tRNA pseudouridine synthase A [Methanofollis liminatans DSM 4140]
gi|395441239|gb|EJG05996.1| tRNA pseudouridine synthase A [Methanofollis liminatans DSM 4140]
Length = 297
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 119/266 (44%), Gaps = 38/266 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+A ++ Y+G+ F+G + TVE E+ + L D + ++ GRTD+GV++
Sbjct: 3 LAFRLGYWGENFFGSQVQAEVR-TVEGEVIATCRRVGLF-DDPGAARFAFAGRTDRGVNA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
VGQV A E+ V L LP DI GW+
Sbjct: 61 VGQVCAF-----------------------STEEPERAVAALGFELPGDIWTTGWATVHD 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
FS R SR Y+Y+F E ++ AM+ A ++FVGEHDF F + + + R V S
Sbjct: 98 GFSPRKEARSRTYRYYFSEEFGDVPAMDEAAQEFVGEHDFTRFSRQ---SERSPIRRVIS 154
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
+ E + ++ +FLW+ VRCM L +G+G S + I +LL G
Sbjct: 155 AGVR------EEDDFRVFEVTAESFLWNMVRCMAWSLAAVGRGEMSREEIRALLQRQGER 208
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFT 359
R P PE L+L D+ G FT
Sbjct: 209 RVPAAR--PE-GLILTDVDY-GFPFT 230
>gi|390960509|ref|YP_006424343.1| putative pseudouridine synthase [Thermococcus sp. CL1]
gi|390518817|gb|AFL94549.1| putative pseudouridine synthase [Thermococcus sp. CL1]
Length = 267
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 140/303 (46%), Gaps = 41/303 (13%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL+V Y G FYGF + TVE E+ +AL K R+ + + +E+ + RTD+GVS+
Sbjct: 3 LALRVAYDGTAFYGFQRQPGVR-TVEGELIRALTKLRI-IENPEENDFKGASRTDRGVSA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
V++ GE + E VLN L +D+ V+G + P
Sbjct: 61 FFNVVSF--------------VPGERADLAKPE-------VLNHHL-RDVWVLGVAEVPD 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
+F RF + Y+Y+ E +L M K F G HDF F K++ + R ++S
Sbjct: 99 EFHPRFWARGKTYRYYLVDEGFDLETMLECAKLFEGTHDFSAFAKLEPG--RDPVRTISS 156
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
++ + ++I G +FLW VR +V L G GL + ++S+L+
Sbjct: 157 IVMT------QRGGYYVVEISGESFLWEMVRRIVNALRFCGLGLLEVGEVKSMLEGIYTK 210
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQ---LQAAIFHEAL 390
+ P AP LVL D+ G++FT G ++ R+ + Y +AA+F +AL
Sbjct: 211 KIPP---APAEGLVLWHIDYPGIEFTGD---GRGIKKARRDLFERYSRALTRAALFGDAL 264
Query: 391 LNC 393
L
Sbjct: 265 LEL 267
>gi|213513998|ref|NP_001134221.1| tRNA pseudouridine synthase A [Salmo salar]
gi|209731596|gb|ACI66667.1| tRNA pseudouridine synthase A [Salmo salar]
Length = 392
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 147/336 (43%), Gaps = 68/336 (20%)
Query: 54 EDGTTLVEENRKTESGGCKTG-----KKKVKE-KMSGTLNHHFKRYVALKVMYFGQRFYG 107
E G L++ ++ E G ++G +KK+K + +G H KR V L + Y G+ +YG
Sbjct: 6 ESGNMLIKPLKRVEEGNGESGENGHIRKKLKSVEPTGNERKHPKRKVVLLLAYSGKGYYG 65
Query: 108 FASDGNME--PTVESEIFKALEKTRLLVA----DKKESHYSRCGRTDKGVSSVGQVIAIY 161
+ T+E E+ AL K+ + D K+ + RC RTDKGVS+ GQV+++
Sbjct: 66 MQRNAGSSQFKTIEDELVTALIKSGCIPDNHGDDMKKMSFQRCARTDKGVSAAGQVVSLK 125
Query: 162 LRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSC 221
L IED ++ + N LP IRV+G F+++ SC
Sbjct: 126 LW--------------------MIEDVMEKI---NSNLPPQIRVLGLKRVTGGFNSKNSC 162
Query: 222 ISREYKYF------------------FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAAN 263
+R Y Y F E L + + G H+F NF AA
Sbjct: 163 DARTYSYMLPTVAFSPKDYYTKNYAAFRLEPETLQRVNQLFGSYKGTHNFHNFTSQKAAW 222
Query: 264 VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVI 323
+ +R++T ++ G + I +RG +F+ HQ+R M+ ++ + +G +V+
Sbjct: 223 DPSARRYITEMSCGEPFVR-GGAEFAEITVRGQSFMMHQIRKMIGLVIAVVKGYSGDEVL 281
Query: 324 -----ESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
E +D +P+ AP + LVL+ FD
Sbjct: 282 KRSWGEEKVD---VPK------APGLGLVLEKVHFD 308
>gi|156097182|ref|XP_001614624.1| tRNA pseudouridine synthase [Plasmodium vivax Sal-1]
gi|148803498|gb|EDL44897.1| tRNA pseudouridine synthase, putative [Plasmodium vivax]
Length = 241
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 93/173 (53%), Gaps = 8/173 (4%)
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGE 250
YV+ +N+ L K ++VI P F AR +CI R Y YFF +N N M+ K F+GE
Sbjct: 24 YVKEINKKL-KHMQVIDMRSVPNFFDARLNCIHRTYLYFFMDKNYNFERMKEGCKLFLGE 82
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
HDF NFCK N ++R + FE+ F KI+G++FL++Q+R MVA L
Sbjct: 83 HDFSNFCK-KRKNSTCFRRTILKFEVRRMDKKFH-----YFKIKGTSFLYNQIRHMVAAL 136
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
F +G G ++ + ++L+ N R + +A E L+L S F L F +D
Sbjct: 137 FQLGTGNLEVEDLANMLN-NHPCRDKNFKIADEDGLLLYSFKFSDLNFNVHVD 188
>gi|148642915|ref|YP_001273428.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii ATCC
35061]
gi|226708656|sp|A5ULI2.1|TRUA_METS3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|148551932|gb|ABQ87060.1| tRNA pseudouridine synthase A, TruA [Methanobrevibacter smithii
ATCC 35061]
Length = 290
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/322 (27%), Positives = 141/322 (43%), Gaps = 63/322 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
ALK+ Y G F+GF ++ TVE E+ L K + D K+S + GRTD GV S
Sbjct: 4 TALKIGYIGTNFHGFQRQPDLR-TVEEELIYHLRKLGY-IDDLKKSRFRIAGRTDAGVHS 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G VI+ ++ NN+ LP DI+++ +P
Sbjct: 62 LGNVISFQSEKEVRVNEINNS------------------------LPDDIQILAKAPVRF 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFC--------------KM 259
F R++ + R+Y+Y +R +L+L + + F G H+F NF K+
Sbjct: 98 GFKPRYAEM-RQYRYVLFRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQKTTTRTIDDIKI 156
Query: 260 DAANVHNYKRHVTSFE-----ISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
AN+++Y H F +SP ++ I G +FLW+ VR M+ V +
Sbjct: 157 TKANLNDY--HKKEFPNLHDTLSPVFVD----------IYGESFLWNMVRKMMRVFVDVA 204
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIP--LVLQSCDFDGLKFTCSLDAGHDLRLHL 372
G S++ +E LL N P+ N+ P L+L +DG+KF A + +L
Sbjct: 205 IGKLSLEKVEELL--NPAENDPRANIKVLDPDYLILMDIKYDGVKFVYDDYACERFKRNL 262
Query: 373 RNECQVYQLQAAIFHEALLNCL 394
+ Q + AI E+++ L
Sbjct: 263 VDSLGDLQRKYAI-RESMIKSL 283
>gi|378754020|gb|EHY64195.1| hypothetical protein NERG_02759, partial [Nematocida sp. 1 ERTm2]
Length = 194
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 41/190 (21%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKK-------------- 137
R V LK+ Y GQ ++GFA + PTVE +F + K + + A++K
Sbjct: 6 RNVLLKLSYNGQNYHGFAYQPGL-PTVEHHLFLSFVKAKFIQAEEKQVYPSTFVWPKEIL 64
Query: 138 ----ESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR 193
E Y +CGRTD GVS+ Q I+++L A G+ E Y
Sbjct: 65 SGIAERKYYKCGRTDAGVSAASQFISLFL----------PAPAGK---------EYPYDL 105
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR---ENLNLSAMESAGKKFVGE 250
+LN+ LP+DIRV+GW FSARFSCISREY+Y+F + +L++ M + +G
Sbjct: 106 ILNQHLPEDIRVLGWMFVDDQFSARFSCISREYEYYFSKRAGSSLSIEKMADESQNLLGT 165
Query: 251 HDFRNFCKMD 260
H F CK +
Sbjct: 166 HWFGRLCKQE 175
>gi|410671117|ref|YP_006923488.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
gi|409170245|gb|AFV24120.1| tRNA pseudouridine synthase A [Methanolobus psychrophilus R15]
Length = 273
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 115/251 (45%), Gaps = 36/251 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G F+G N+ T+E EIF+AL + + + D + ++++ GRTD GV +
Sbjct: 3 VALKIAYVGTGFHGSQIQPNVA-TIEGEIFRALTELEI-IQDPRSANFTSAGRTDAGVHA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
VIA +T+ + RV+N LP I + P
Sbjct: 61 RELVIAF---------DTDKIHLA-------------IPRVINSKLPTAIWAWAHAEIPE 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF R + I+R+Y+Y E ++S + SA + G HDF NFC + K V +
Sbjct: 99 DFDPRRAAIARKYRYIMSGEQYDISRIRSASRILAGTHDFSNFCTKEGE-----KSTVRT 153
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT---- 329
E +S L I I+ ++FLW+ VR +V L M+G G ++ +L+
Sbjct: 154 IEKVDIRVS---GTLTKIDIQANSFLWNMVRKIVTALTMVGSGARDEAWLQQMLEPEIYE 210
Query: 330 NGIPRKPQYNM 340
G+ P Y +
Sbjct: 211 EGLESAPAYGL 221
>gi|222445148|ref|ZP_03607663.1| hypothetical protein METSMIALI_00769 [Methanobrevibacter smithii
DSM 2375]
gi|222434713|gb|EEE41878.1| tRNA pseudouridine synthase A [Methanobrevibacter smithii DSM 2375]
Length = 288
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 140/325 (43%), Gaps = 59/325 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
ALK+ Y G F+GF ++ TVE E+ L K + D K+S + GRTD GV S
Sbjct: 4 TALKIGYIGTNFHGFQRQPDLR-TVEEELIYHLRKLGY-IDDLKKSRFRIAGRTDAGVHS 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G VI+ ++ NN+ LP DI+++ +P
Sbjct: 62 LGNVISFQSEKEVRVNEINNS------------------------LPDDIQILAKAPVRF 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFC--------------KM 259
F R++ + R+Y+Y +R +L+L + + F G H+F NF K+
Sbjct: 98 GFKPRYAEM-RQYRYVLFRSDLDLYKLNEVAEIFKGTHNFTNFTKRFQKTTTRTIDDIKI 156
Query: 260 DAANVHNYKRHVTSFE-----ISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
AN+++Y H F +SP ++ I G +FLW+ VR M+ V +
Sbjct: 157 TKANLNDY--HKKEFPNLHDTLSPVFVD----------IYGESFLWNMVRKMMRVFVDVA 204
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRN 374
G S++ +E LL+ + + L+L +DG+KF A + +L +
Sbjct: 205 IGKLSLEKVEELLNPAENDLRANIKVLDPDYLILMDIKYDGVKFVYDDYACERFKRNLVD 264
Query: 375 ECQVYQLQAAIFHEALLNCLPLANG 399
Q + AI E+++ L NG
Sbjct: 265 SLGDLQRKYAI-RESMIKSLEDLNG 288
>gi|435850369|ref|YP_007311955.1| pseudouridylate synthase I [Methanomethylovorans hollandica DSM
15978]
gi|433660999|gb|AGB48425.1| pseudouridylate synthase I [Methanomethylovorans hollandica DSM
15978]
Length = 269
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 103/223 (46%), Gaps = 36/223 (16%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G ++G ++ T+E E+F AL++ + + D K + + GRTD GV +
Sbjct: 3 VALKIAYVGTGYHGSQIQSDVA-TIEGELFNALKELDI-IDDPKTASFQSSGRTDAGVHA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+A NT+ ++ RV+N LP I + P
Sbjct: 61 RGQVVAF---------NTDKPNLS-------------IPRVINSKLPNSIWAWAHAEVPY 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKM--DAANVHNYKRHV 271
DF R SR Y+Y E ++S + SA K GEHDF NFC D + V + KR
Sbjct: 99 DFDPRRDANSRVYRYIMSGEQYDISRIRSASKILAGEHDFSNFCSKDEDKSTVRDVKR-- 156
Query: 272 TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+S L I I ++FLW+ VR +V L M+G
Sbjct: 157 IDVRVS--------GALTKIDIEANSFLWNMVRKIVTALTMVG 191
>gi|341581737|ref|YP_004762229.1| tRNA pseudouridine synthase A [Thermococcus sp. 4557]
gi|340809395|gb|AEK72552.1| tRNA pseudouridine synthase A [Thermococcus sp. 4557]
Length = 267
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 136/297 (45%), Gaps = 35/297 (11%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
AL++ Y G FYGF ++ TVE E+ +AL K + + D + S++ RTD+GVS++
Sbjct: 4 ALRIAYDGTAFYGFQRQPDVR-TVEGELIRALSKLGI-IRDAESSNFKGASRTDRGVSAI 61
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
V+A + AS + V+ E VLN L +D+ V+G + P D
Sbjct: 62 FNVVAF-----------DVASRPDLVRAE----------VLNHHL-RDLWVLGVAEVPDD 99
Query: 215 FSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSF 274
F RF S+ Y+Y+ E N M FVGEHDF F +++ + R +
Sbjct: 100 FHPRFQARSKTYRYYLVDEGFNERDMRECAALFVGEHDFSAFSRLEPG--RDPIRELLRV 157
Query: 275 EISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPR 334
++ I +G + I+I G +FLW R +V + + G GL +E +L+ +
Sbjct: 158 DV----IRRQGYYI--IEIEGKSFLWEMARRIVNAVRLCGLGLMESREVEGMLEGEYNKK 211
Query: 335 KPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALL 391
P AP L+L ++ +KF + L +AA+F +ALL
Sbjct: 212 VPP---APPEGLILWHMEYPDVKFQADERGIKKAKRDLFERYSRALTRAALFGDALL 265
>gi|145356339|ref|XP_001422390.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582632|gb|ABP00707.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 286
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 118/264 (44%), Gaps = 47/264 (17%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
ALK+ Y G+R+ GF G PT++ E+ +AL K L D++ GRTD GV +
Sbjct: 19 ALKISYDGERYNGFQYQGEDVPTIQRELERALAK--LTGIDRERLRLGAAGRTDAGVHAR 76
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG-WSPAPT 213
GQV Y C S+GE + Q + +N +LPKDIRV W P P
Sbjct: 77 GQVAHFY-------CEK---SLGEDLTRCQ--------KAMNGMLPKDIRVDAFWEPHPL 118
Query: 214 DFSARFSCISREYKYFF------------------WRENLNLSAMESAGKKFVGEHDFRN 255
F +RF + Y Y+ WR ++ + A + FVG D++
Sbjct: 119 -FHSRFHASGKTYHYYVDARATSSPFTRKYAHQVGWRP-CDVELLRQAAQLFVGTMDYKG 176
Query: 256 FCKM--DAANV-HNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
FC D +N N R + F++ + + L +++ G FL+ QVR MV L +
Sbjct: 177 FCNTSRDKSNEDRNTTRTIRRFDV---FEDAADDGLIRLEVEGDGFLYRQVRNMVGALLV 233
Query: 313 IGQGLESIDVIESLLDTNGIPRKP 336
+ G + + +L++T R P
Sbjct: 234 VASGKHDLAYLRTLIETKDRSRAP 257
>gi|14591061|ref|NP_143136.1| tRNA pseudouridine synthase A [Pyrococcus horikoshii OT3]
gi|3915167|sp|O58941.1|TRUA_PYRHO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|3257659|dbj|BAA30342.1| 262aa long hypothetical pseudouridylate synthase [Pyrococcus
horikoshii OT3]
Length = 262
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 126/265 (47%), Gaps = 39/265 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G +F+GF N+ TVE EI KAL + ++ + K + RTDKGVS+
Sbjct: 3 VALKIAYDGTKFHGFQRQPNVR-TVEGEIIKALNNSGIMFNELKSA-----SRTDKGVSA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G V+AI T ++E+I + + +LN L KD+ V+ P+
Sbjct: 57 LGNVVAI------------------TTEDERITNPM----ILNAKL-KDVWVLSAVKVPS 93
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF RF S+ Y+Y+ +L++ ++ K F+G HDF F ++D +
Sbjct: 94 DFHPRFWARSKVYRYYLPSFDLDVEKVKECSKLFLGVHDFSAFSRVDGRETVRSIDRIEV 153
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
++ P + AI++ +FLW VR +V L + G G S + + +L
Sbjct: 154 LDLGP---------VLAIEVEAKSFLWEMVRRIVKTLELCGLGKLSSEEVRKML-RGKFE 203
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKF 358
+ + AP L+L + G++F
Sbjct: 204 KSRKVPPAPAEGLLLVEVKYKGIEF 228
>gi|187917895|ref|YP_001883458.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH]
gi|238689303|sp|B2S1K1.1|TRUA_BORHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|119860743|gb|AAX16538.1| tRNA pseudouridine synthase A [Borrelia hermsii DAH]
Length = 245
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 117/274 (42%), Gaps = 53/274 (19%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G +YGF +PT++ EI KALEK K + GRTDKGV + GQ+
Sbjct: 8 IAYDGSLYYGFQIQPT-KPTIQGEIEKALEKI-----SKTKVKVHSAGRTDKGVHARGQI 61
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
I+ Y+R NIK N A +N +L KDIR+I +F
Sbjct: 62 ISFYIRINIKLKNLKTA--------------------INSLLRKDIRIIKLKYVADEFQP 101
Query: 218 RFSCISREYKYFF--------W--------RENLNLSAMESAGKKFVGEHDFRNF-CKMD 260
RF+ R+Y Y+ W ++ LN++ + K +G HDF F C D
Sbjct: 102 RFNAKRRKYSYYILNNENHYPWEGYQAYYVKKKLNINRLNEMAKMLIGIHDFTTFSCIKD 161
Query: 261 AANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
N K + F+ + N+L +I GS+FLW VR +V + I E +
Sbjct: 162 QTNSKLKKIYFARFK--------KKNKLIIFEIIGSSFLWKMVRSIVGTIIDIEIKNEPV 213
Query: 321 DVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ +L++ RK AP L L ++
Sbjct: 214 YTFKKILNSKN--RKFTRTTAPAKALFLDKVFYE 245
>gi|270002527|gb|EEZ98974.1| hypothetical protein TcasGA2_TC004829 [Tribolium castaneum]
Length = 390
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 132/303 (43%), Gaps = 53/303 (17%)
Query: 61 EENRKTESGGCKTGKKKVKEK---MSGTLNHHFKRY-VALKVMYFGQRFYGFASDGNMEP 116
EE R + G K K+ +K ++G L KR A+ + Y G +YG + N P
Sbjct: 22 EERRSDKGEGLNFHKSKIIKKETEVTGELIEKIKRRKFAVLLGYSGTNYYGMQRNPNT-P 80
Query: 117 TVESEIFKALEKTRLLVADK----KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTN 172
T+E E FKAL K + + + + R RTDKGVS+ QV+++ LR +I
Sbjct: 81 TIEEEFFKALYKNNYISEENFTQVQTMQFQRAARTDKGVSAARQVVSLKLREDID----- 135
Query: 173 NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYF--- 229
+ +N LP+ IRV G F+++ C SR Y Y
Sbjct: 136 -------------------ISKINEQLPEVIRVFGIRRVTKGFNSKVQCDSRSYTYLLPT 176
Query: 230 --------------FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFE 275
F ++ L+ + +K++G +F NF A + KR++ +
Sbjct: 177 VSFTPHDQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNFTSKKQATDPSAKRYMKTLI 236
Query: 276 ISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL--LDTNGIP 333
++ + + IKIRG +F+ HQ+R MV +L + +G S D ++ +D IP
Sbjct: 237 CEKPFVK-DDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLDLAFGMDKVNIP 295
Query: 334 RKP 336
+ P
Sbjct: 296 KAP 298
>gi|14521207|ref|NP_126682.1| tRNA pseudouridine synthase A [Pyrococcus abyssi GE5]
gi|14548295|sp|Q9UZZ3.1|TRUA_PYRAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|5458425|emb|CAB49913.1| truA pseudouridylate synthase I [Pyrococcus abyssi GE5]
gi|380741777|tpe|CCE70411.1| TPA: tRNA pseudouridine synthase A [Pyrococcus abyssi GE5]
Length = 263
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 125/268 (46%), Gaps = 39/268 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VA K+ Y G RF+GF N+ TVE EI KAL + ++ +D + RTD+GVS+
Sbjct: 3 VAFKIAYDGTRFHGFQRQPNLR-TVEGEIIKALNNSGIMYSD-----FKSASRTDRGVSA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G V+AI T ++E+ + + VLN L +D+ ++ P
Sbjct: 57 LGNVVAI------------------TTEDEKALNPM----VLNARL-EDVWILSAIEVPQ 93
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF RF S+ Y+Y+ L + ++ + F+G HDF F ++D + +
Sbjct: 94 DFHPRFWAKSKVYRYYLPSIGLEVEKVKECSQLFLGVHDFSAFSRVDGRDTVRSIDRIEV 153
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
F + P I I+I +FLW VR +V L + G G S + I+ +L+
Sbjct: 154 FTLGPILI---------IEIEAKSFLWEMVRRIVKALELCGLGRLSCEEIKEMLEGK-FE 203
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCS 361
+ + AP L+L ++G++F +
Sbjct: 204 KSKKVPPAPPEGLLLVDIKYEGIEFPLN 231
>gi|91076290|ref|XP_968649.1| PREDICTED: similar to AGAP002409-PA [Tribolium castaneum]
Length = 588
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 132/303 (43%), Gaps = 53/303 (17%)
Query: 61 EENRKTESGGCKTGKKKVKEK---MSGTLNHHFKRY-VALKVMYFGQRFYGFASDGNMEP 116
EE R + G K K+ +K ++G L KR A+ + Y G +YG + N P
Sbjct: 220 EERRSDKGEGLNFHKSKIIKKETEVTGELIEKIKRRKFAVLLGYSGTNYYGMQRNPNT-P 278
Query: 117 TVESEIFKALEKTRLLVADK----KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTN 172
T+E E FKAL K + + + + R RTDKGVS+ QV+++ LR +I
Sbjct: 279 TIEEEFFKALYKNNYISEENFTQVQTMQFQRAARTDKGVSAARQVVSLKLREDID----- 333
Query: 173 NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYF--- 229
+ +N LP+ IRV G F+++ C SR Y Y
Sbjct: 334 -------------------ISKINEQLPEVIRVFGIRRVTKGFNSKVQCDSRSYTYLLPT 374
Query: 230 --------------FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFE 275
F ++ L+ + +K++G +F NF A + KR++ +
Sbjct: 375 VSFTPHDQLMVQKGFRLDDSTLNRINDLLQKYLGTKNFHNFTSKKQATDPSAKRYMKTLI 434
Query: 276 ISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL--LDTNGIP 333
++ + + IKIRG +F+ HQ+R MV +L + +G S D ++ +D IP
Sbjct: 435 CEKPFVK-DDVEFALIKIRGQSFMLHQIRKMVGLLIAVVKGYTSEDTLDLAFGMDKVNIP 493
Query: 334 RKP 336
+ P
Sbjct: 494 KAP 496
>gi|57640862|ref|YP_183340.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1]
gi|62901178|sp|Q5JI92.1|TRUA_PYRKO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|57159186|dbj|BAD85116.1| tRNA pseudouridine synthase A [Thermococcus kodakarensis KOD1]
Length = 267
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 130/298 (43%), Gaps = 35/298 (11%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL+V Y G FYGF + TVE EI K L+K ++ + +K + + RTD+GVS+
Sbjct: 3 LALRVAYDGSAFYGFQRQPGVR-TVEGEIIKVLQKLGIIESPEK-NDFKGASRTDRGVSA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
V++ V E+ ++ VLN L D+ V+G + P
Sbjct: 61 FFNVVSF-------------------VPSER--PDLARPEVLNHHL-SDVWVLGIAEVPD 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF RF + Y+Y+ E +LSAM FVG HDF F K++ + R V
Sbjct: 99 DFHPRFWAKFKTYRYYLVNEGFDLSAMRECASLFVGRHDFSAFAKLEPGR--DPIREVER 156
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
E+ E I+++G +FLW VR +V L G GL + +E +L
Sbjct: 157 VEV------IERQGYLVIEVQGKSFLWEMVRRIVNALRFCGLGLLEAEEVERMLSGEYGK 210
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALL 391
+ P AP LVL ++ G+ F R + +AA+F + LL
Sbjct: 211 KIPP---APPEGLVLWHIEYPGIGFEGDEKGIKKARRDIFERYSRALTRAALFGDFLL 265
>gi|355571506|ref|ZP_09042758.1| tRNA pseudouridine synthase A [Methanolinea tarda NOBI-1]
gi|354825894|gb|EHF10116.1| tRNA pseudouridine synthase A [Methanolinea tarda NOBI-1]
Length = 289
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 122/292 (41%), Gaps = 39/292 (13%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+A + Y G RF G TVE E A + L D + + GRTD+GV +
Sbjct: 15 LAFRCGYIGDRFSGSQVQSGAR-TVEGEFIAACLRLSLF-PDPRAGRFQAAGRTDRGVHA 72
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV I + N +L LP D+ V G +
Sbjct: 73 RGQVFCISTPFPDRAIN-----------------------LLRYHLPADLWVTGVARVAP 109
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
F R I R Y+YFF +L++ M+ A + F G DF F + D + R V S
Sbjct: 110 GFHPRHGAIHRTYRYFFGERDLDVQPMDRAARAFEGTFDFSLFARPDG---RDPVRTVLS 166
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
+ FE + + ++R +FLWH VR M + L ++G G ++ S L +G P
Sbjct: 167 ARV------FEESGIVVFEVRAESFLWHMVRYMASALRLVGTGEADEKLVSSRL--SGDP 218
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAI 385
R + + AP LVL + G F LDAG R +L E +++A +
Sbjct: 219 RG-RLSPAPPGGLVLWDVSY-GFPFD-PLDAGKKARTYLEREYVSSRVRACV 267
>gi|239791165|dbj|BAH72086.1| ACYPI006976 [Acyrthosiphon pisum]
Length = 157
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 24/148 (16%)
Query: 59 LVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTV 118
L E+NRK K G+K K K + + KR+V K++Y G ++GFA+ E T+
Sbjct: 30 LKEQNRK------KLGRKITKPKRTIDFTKYHKRHVVFKILYLGWDYHGFATQDVSEKTI 83
Query: 119 ESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGE 178
E E+F+AL L+ ++ S+Y RCGRTDKGVSS QVI++ +RSN +
Sbjct: 84 EYELFRALTIC-CLIESRQTSNYHRCGRTDKGVSSFSQVISLTVRSNGDD---------- 132
Query: 179 TVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
+E+ Y ++LNR+LPKDIRV+
Sbjct: 133 -------SEELPYCKMLNRLLPKDIRVV 153
>gi|384247684|gb|EIE21170.1| tRNA pseudouridine synthase A [Coccomyxa subellipsoidea C-169]
Length = 297
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 118/260 (45%), Gaps = 49/260 (18%)
Query: 85 TLNHHFKRYVALKVMYFGQRFYGFASD-GNMEPTVESEIFKALEKTRLLVADKKESHYSR 143
L H++K ++ Y G + GF G T++ E+ KAL T + D+ E +
Sbjct: 40 ALLHNYKATIS----YDGTDYNGFQLQLGVRGRTIQGELEKAL--TLVTQNDRAELKVTA 93
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDI 203
GRTD GV + GQV+ + S C + +NR+LP DI
Sbjct: 94 SGRTDAGVHASGQVVNFF--SGKGHCPSR------------------LWHSMNRLLPPDI 133
Query: 204 RVIGWSPAPTDFSARFSCISREYKY----------FFWREN------LNLSAMESAGKKF 247
RV+ P DF+ARFS +S+EY++ F WR + L++ AM A K F
Sbjct: 134 RVLDVQPVGPDFNARFSALSKEYRFQICTGPLHDPFLWRYSQHVYLPLDVEAMRQAAKCF 193
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
+G HDF F + N ++ +T FE+ F ++++GS FL+ VR MV
Sbjct: 194 LGSHDFTQFASTYPVGM-NPRKTLTRFEVVEVRPGF-----LRLEVQGSGFLYRMVRHMV 247
Query: 308 AVLFMIGQGLESIDVIESLL 327
L +G+G IE LL
Sbjct: 248 GALIEVGKGTMKEAQIEELL 267
>gi|124486487|ref|YP_001031103.1| tRNA pseudouridine synthase ACD [Methanocorpusculum labreanum Z]
gi|166228737|sp|A2SU30.1|TRUA_METLZ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|124364028|gb|ABN07836.1| tRNA pseudouridine synthase A [Methanocorpusculum labreanum Z]
Length = 281
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 112/240 (46%), Gaps = 41/240 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+A Y GQ F G +P TVE E F A L +D KE+H+ GRTDKG
Sbjct: 3 LAFLAGYRGQNFAG----SQYQPHKRTVEGE-FVAGGIELGLFSDAKEAHFRTAGRTDKG 57
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
VS+ Q+ +I T ++ ++ + LN LP DI IG +
Sbjct: 58 VSARRQLFSI------------------TTEKPELA-----IEALNFHLPDDIWCIGAAE 94
Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRH 270
+F R++ R Y+Y+F ++S M+ A + +G H+F F KM+A + R
Sbjct: 95 VDEEFYPRYAARERSYRYYF-PYPADVSRMQDAASRLIGTHNFSGFAKMEAGR--DPVRT 151
Query: 271 VTSFEISPCYISFEGNQLCAI-KIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
VT E+ FEG C + ++ +FLW+ VR M L IG GL DVIE LL +
Sbjct: 152 VTRAEV------FEGKDGCPVFEVAAKSFLWNMVRGMAGALQTIGLGLCEPDVIEELLSS 205
>gi|119952818|ref|YP_945027.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135]
gi|254789604|sp|A1QYG5.1|TRUA_BORT9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|119861589|gb|AAX17357.1| tRNA pseudouridine synthase A [Borrelia turicatae 91E135]
Length = 245
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 116/278 (41%), Gaps = 53/278 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V K+ Y G +YGF +PT++ EI K LEK K + GRTDKGV +
Sbjct: 4 VLAKITYDGSLYYGFQIQPK-KPTIQGEIEKVLEKI-----SKTKIKIHSAGRTDKGVHA 57
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQ+I+ Y++ NIK N A +N +L DIR+I
Sbjct: 58 RGQIISFYIKINIKLKNLKTA--------------------INSLLKDDIRIIKLKYVED 97
Query: 214 DFSARFSCISREYKYFF--------W--------RENLNLSAMESAGKKFVGEHDFRNF- 256
F RF R+Y Y+ W ++ LN++ + + +G HDF F
Sbjct: 98 KFQPRFDAKRRKYSYYILNNENHYPWEGYRAYYVKKKLNINRLNEMAEMLIGIHDFTTFS 157
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
C D N + + F+ +I FE I GS+FLW VR +V V+ I
Sbjct: 158 CIRDQTNSKLKEIYYARFKKKNKFIIFE--------IIGSSFLWKMVRSIVGVMIDIEIK 209
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
E +D + +L++ RK AP L L ++
Sbjct: 210 NEPVDTFKKILNSKN--RKLTRKTAPAKALFLDKVFYE 245
>gi|212223540|ref|YP_002306776.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1]
gi|229470756|sp|B6YTJ2.1|TRUA_THEON RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|212008497|gb|ACJ15879.1| tRNA pseudouridine synthase A [Thermococcus onnurineus NA1]
Length = 267
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 138/302 (45%), Gaps = 39/302 (12%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL++ Y G FYGF + TVE EI +AL K + + D + S++ RTD+GVS+
Sbjct: 3 LALRIAYDGTAFYGFQRQPGLR-TVEGEIIRALTKLGI-IEDVESSNFKGASRTDRGVSA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
V+A + AS + V+ E VLN L KD+ V+G + P
Sbjct: 61 FFNVVAF-----------DVASRPDLVRPE----------VLNFHL-KDVWVLGTAEVPE 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF RF S+ Y+Y+ + AM K F+G HDF F +++ N R +
Sbjct: 99 DFHPRFWAKSKTYRYYLIDAGFDEKAMRECAKLFIGTHDFSAFARLEPHK--NPVRELIR 156
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
+I I +G + I++ G +FLW R +V L G G+ + + +E +L+
Sbjct: 157 ADI----IKRQGYYI--IELEGKSFLWEMARRIVNALRFCGLGILTEEEVEKMLNGEYSR 210
Query: 334 RKPQYNMAPEIP--LVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALL 391
+ P P P LVL +++G++F + + L +AA+F + LL
Sbjct: 211 KIP-----PARPEGLVLWGIEYEGIEFRGNEKGIRKAKHDLFERYSEALTRAALFGDLLL 265
Query: 392 NC 393
Sbjct: 266 GL 267
>gi|334564206|ref|ZP_08517197.1| tRNA pseudouridine synthase A [Corynebacterium bovis DSM 20582]
Length = 295
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 111/277 (40%), Gaps = 41/277 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G F+G+A+ + + LE RL ++ GRTD GV +
Sbjct: 11 VRLDIAYDGTDFHGWAAQDGLR-----TVAGVLED-RLATVVRRPVRLVVAGRTDAGVHA 64
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV L ++ + + + D VR L+R+LP DIR+ G S AP
Sbjct: 65 HGQVAHADLPAD-------------AFTQRSLTEPADLVRRLSRMLPPDIRLHGASAAPE 111
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y WR ++ AM++A VG HDF F
Sbjct: 112 GFDARFSALRRHYLYRVSCAPAGVLPVRARDTAAWRRPVDRGAMQAAADALVGLHDFAAF 171
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
C+ A R + F + E A ++ AF W VR +V +G+G
Sbjct: 172 CR--AREGATTVRDLQEFTWTDVSTDVEPETYEA-RVTADAFCWSMVRSLVGACLAVGEG 228
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL R P+ +AP L L D+
Sbjct: 229 RRAAGFTGELLGERR--RSPRVPVAPANGLALTGVDY 263
>gi|110737769|dbj|BAF00823.1| putative tRNA pseudouridine synthase [Arabidopsis thaliana]
Length = 323
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 139/319 (43%), Gaps = 53/319 (16%)
Query: 81 KMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESH 140
K+SG+ + ++ L + Y G RF G+ + PT++S + KAL + L +KE
Sbjct: 34 KVSGSGAYKWR----LVIAYDGTRFAGWQYQES-PPTIQSMLEKALIQITEL--GRKELQ 86
Query: 141 YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLP 200
GRTD GV + GQV N ++ +A+ LN +LP
Sbjct: 87 LIGAGRTDAGVHAWGQVAHFVTPFNYTSLDSFHAA-------------------LNGLLP 127
Query: 201 KDIRVIGWSPAPTDFSARFSCISREYKYFFWREN----------------LNLSAMESAG 244
KDIRV S A +F ARFS S+ Y+Y + + LN S M A
Sbjct: 128 KDIRVRELSAAVPEFHARFSASSKVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAA 187
Query: 245 KKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
FVG+HDF F + V + + ++ F++ + L +++ GS FL+ QV
Sbjct: 188 NLFVGKHDFSAFANATREDGVPDPLKTISRFDV------IQMGSLLQLEVEGSGFLYRQV 241
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIP--LVLQSCDF--DGLKFT 359
R MVA+L IG+ D++ +L+T +Y P P L L S + D LK
Sbjct: 242 RNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVKYKEDHLKLP 301
Query: 360 CSLDAGHDLRLHLRNECQV 378
R H +C++
Sbjct: 302 LDCPVTSSGRHHTITKCKL 320
>gi|6729002|gb|AAF26999.1|AC016827_10 putative tRNA pseudouridine synthase [Arabidopsis thaliana]
Length = 298
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 131/304 (43%), Gaps = 49/304 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G RF G+ + PT++S + KAL + L +KE GRTD GV + G
Sbjct: 20 LVIAYDGTRFAGWQYQES-PPTIQSMLEKALIQITEL--GRKELQLIGAGRTDAGVHAWG 76
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N ++ +A+ LN +LPKDIRV S A +F
Sbjct: 77 QVAHFVTPFNYTSLDSFHAA-------------------LNGLLPKDIRVRELSAAVPEF 117
Query: 216 SARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKM 259
ARFS S+ Y+Y + + LN S M A FVG+HDF F
Sbjct: 118 HARFSASSKVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANA 177
Query: 260 DAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ V + + ++ F++ + L +++ GS FL+ QVR MVA+L IG+
Sbjct: 178 TREDGVPDPLKTISRFDV------IQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEAL 231
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIP--LVLQSCDF--DGLKFTCSLDAGHDLRLHLRN 374
D++ +L+T +Y P P L L S + D LK R H
Sbjct: 232 DSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVKYKEDHLKLPLDCPVTSSGRHHTIT 291
Query: 375 ECQV 378
+C++
Sbjct: 292 KCKL 295
>gi|30680075|ref|NP_187351.2| tRNA pseudouridine synthase A [Arabidopsis thaliana]
gi|119360081|gb|ABL66769.1| At3g06950 [Arabidopsis thaliana]
gi|332640958|gb|AEE74479.1| tRNA pseudouridine synthase A [Arabidopsis thaliana]
Length = 323
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 131/304 (43%), Gaps = 49/304 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G RF G+ + PT++S + KAL + L +KE GRTD GV + G
Sbjct: 45 LVIAYDGTRFAGWQYQES-PPTIQSMLEKALIQITEL--GRKELQLIGAGRTDAGVHAWG 101
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N ++ +A+ LN +LPKDIRV S A +F
Sbjct: 102 QVAHFVTPFNYTSLDSFHAA-------------------LNGLLPKDIRVRELSAAVPEF 142
Query: 216 SARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKM 259
ARFS S+ Y+Y + + LN S M A FVG+HDF F
Sbjct: 143 HARFSASSKVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANA 202
Query: 260 DAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ V + + ++ F++ + L +++ GS FL+ QVR MVA+L IG+
Sbjct: 203 TREDGVPDPLKTISRFDV------IQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEAL 256
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIP--LVLQSCDF--DGLKFTCSLDAGHDLRLHLRN 374
D++ +L+T +Y P P L L S + D LK R H
Sbjct: 257 DSDIVPMILETKDRRVLAKYTSLPASPHGLCLVSVKYKEDHLKLPLDCPVTSSGRHHTIT 316
Query: 375 ECQV 378
+C++
Sbjct: 317 KCKL 320
>gi|443709138|gb|ELU03937.1| hypothetical protein CAPTEDRAFT_83969, partial [Capitella teleta]
Length = 303
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 64/308 (20%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKES-----HYSRCG 145
K+ VA+ + Y G+ ++G + T+E ++ AL K ++ D+ ES + R
Sbjct: 5 KKKVAMFMCYSGKGYFGMQRNPGYA-TIERDLIDALAKAGVVTQDQAESPGPKMQFQRAA 63
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTDKGVS+ GQV ++ + V +N LP+ IR+
Sbjct: 64 RTDKGVSAAGQVCSLKIS----------------------------VFKINEHLPEQIRI 95
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKK--------FVGEHDFRNFC 257
+G P F ++ SC R Y Y + +E A ++ FVG H+F N+
Sbjct: 96 LGIIPVTKGFDSKNSCNGRTYTYMV--PTYAFTPVEMAIQRQVNIILSSFVGTHNFHNYT 153
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+ R++ SF++ +I +G + I IRG +F+ HQ+R M+ V I +G
Sbjct: 154 SGKKPTDPSAHRYIISFKMGDAFI-VDGIEFAVITIRGQSFMLHQIRKMIGVTIAIMRGY 212
Query: 318 ESIDVIESLLDTNG-----IPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHL 372
S V L+D G IPR AP + L+L +D D +H
Sbjct: 213 SSKSV---LIDAWGQDKCDIPR------APGLGLMLDKVHYDDYNKYYGNDG-----IHT 258
Query: 373 RNECQVYQ 380
+ + +VY+
Sbjct: 259 KLDWEVYK 266
>gi|34782865|gb|AAH13427.2| PUS3 protein, partial [Homo sapiens]
Length = 253
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 9/150 (6%)
Query: 260 DAAN-VHNYKRHVTSFEI-----SPCYISF-EGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
D AN V N++R + S ++ SP + E QLC ++ G AFL+HQVRCM+A+LF+
Sbjct: 1 DVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFL 60
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHL 372
IGQG+E ++I+ LL+ P+KPQY+MA E PLVL C F+ +K+ +A HL
Sbjct: 61 IGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHL 120
Query: 373 RNECQVYQLQAAIFHEAL--LNCLPLANGL 400
+ + ++ + + L L+ +P+ G+
Sbjct: 121 QQLWANHAVKTHMLYSMLQGLDTVPVPCGI 150
>gi|18977290|ref|NP_578647.1| tRNA pseudouridine synthase A [Pyrococcus furiosus DSM 3638]
gi|397651422|ref|YP_006492003.1| tRNA pseudouridine synthase A [Pyrococcus furiosus COM1]
gi|24638312|sp|Q8U2C1.1|TRUA_PYRFU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|18892961|gb|AAL81042.1| putative tRNA pseudouridine synthase a [Pyrococcus furiosus DSM
3638]
gi|393189013|gb|AFN03711.1| tRNA pseudouridine synthase A [Pyrococcus furiosus COM1]
Length = 266
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 143/300 (47%), Gaps = 41/300 (13%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G +F+GF N+ T+E EI +AL+ A + ++ RTD+GVS+
Sbjct: 3 VALKIAYDGTKFHGFQRQPNVR-TIEGEILRALKD-----AGIEFENFKSASRTDRGVSA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
G VIA+ + ++++I++ + VLN + D+ + G + P
Sbjct: 57 RGNVIAL------------------STEDDRIKNPM----VLNSRM-SDVWIWGIAEVPE 93
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF RF ++ Y+Y+ +N+ M+ F+G HDF F ++D + R +
Sbjct: 94 DFHPRFWANTKVYRYYLPSLGMNIKKMKECSLLFLGTHDFSAFSRVDG---RDTIRSIDR 150
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG-I 332
EI +E + ++I G +FLW VR +V+ L + QG+ + + I +L NG
Sbjct: 151 IEI------WEKCNVVVVEIEGKSFLWEMVRRIVSALVLCSQGVLAEERIVEML--NGKF 202
Query: 333 PRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEALLN 392
+ + AP L+L ++ ++F + + + +++ +A++ + +LN
Sbjct: 203 EKSRKVPPAPPEGLLLWDIKYENVEFQIDNASLKKFQREIVERFKLHASLSALYEDLILN 262
>gi|76156463|gb|ABA40375.1| SJCHGC06804 protein [Schistosoma japonicum]
Length = 334
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 132/297 (44%), Gaps = 57/297 (19%)
Query: 83 SGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESH-- 140
+G+ H +R A+ +MY G +YG G + PT+E E+ KAL LV E H
Sbjct: 38 NGSGAKHKRRNNAILMMYSGWGYYGMQR-GPIYPTIEGELSKALFTCGQLVNVTSEEHKK 96
Query: 141 --YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRV 198
+ R +TDK VS++GQV ++ ++ D+ D + LN
Sbjct: 97 VNFQRASKTDKYVSALGQVCSL-----------------------KLYDDADLLNKLNTA 133
Query: 199 LPKDIRVIGWSPAPTDFSARFSCISREYKYF---FWRENLNLSAMESAG----------- 244
LP+DIR++ FS+ SC R Y Y F + NLS +S
Sbjct: 134 LPQDIRILDIIRVTRSFSSYNSCTHRVYDYLLPTFALSSGNLSLSDSTCWTYRVTAEKIT 193
Query: 245 ------KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAF 298
+++ G H+F NF + RH+ S E P ++ E ++ I+I G +F
Sbjct: 194 KLNNLLERYKGTHNFYNFTSGRLPTDKSCYRHIKSVECIPTFLLGE-HEYTVIRIIGQSF 252
Query: 299 LWHQVRCMVAVLFMIGQGLESIDVIESLL--DTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ HQVR M+ ++ I +G + DV + + + IP+ AP + L+L DF
Sbjct: 253 MLHQVRKMIGLVLGILRGYATEDVFDIVFCKERVDIPK------APGLGLMLNQVDF 303
>gi|259506738|ref|ZP_05749638.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314]
gi|42559821|sp|Q8FS31.2|TRUA_COREF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|259165679|gb|EEW50233.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314]
Length = 282
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 119/283 (42%), Gaps = 50/283 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + + K LE +V + + GRTD GV +
Sbjct: 3 IRLDLDYDGTDFHGWARQGDSD---LRTVQKVLEDNLGMVL-RAPVELTVAGRTDAGVHA 58
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIE-DEIDYVRVLNRVLPKDIRVIGWSPAP 212
GQV + E++Q+ I+ D VR L+R+LP+DIRV G + AP
Sbjct: 59 AGQVAHFDIPR-------------ESLQQRSIDGDPTKLVRRLSRLLPEDIRVHGVNYAP 105
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARFS + R Y Y W + +++ AM++A +G HDF
Sbjct: 106 EGFDARFSALRRHYVYRITTHPAGPLPTRVRDTAAWPKPVDIQAMQTAADVLIGLHDFVA 165
Query: 256 FCKM--DAANV---HNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
FCK +A+ V + H S P QL + AF W VR +V
Sbjct: 166 FCKAKPNASTVRELQEFTWHDVSTPTEP--------QLYEAHVVADAFCWSMVRSLVGSC 217
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G+G + D LL R P +AP L L D+
Sbjct: 218 MAVGEGRRAGDFTAQLL--TATERSPDVPVAPAKGLSLVGVDY 258
>gi|169335662|ref|ZP_02862855.1| hypothetical protein ANASTE_02082 [Anaerofustis stercorihominis DSM
17244]
gi|169258400|gb|EDS72366.1| tRNA pseudouridine synthase A [Anaerofustis stercorihominis DSM
17244]
Length = 244
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 123/276 (44%), Gaps = 51/276 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + + + Y G+ + G+ N +VE ++ A+EK LV K+E GRTD GV
Sbjct: 2 RNILITIEYDGKNYVGWQMQNN-GISVEEKVKTAIEK---LV--KEEVKLYGSGRTDSGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++GQ + Y SNI D++ Y +N LP+DIRVI
Sbjct: 56 HALGQAASFYTNSNISA------------------DKLPYG--INSFLPEDIRVIKAEEK 95
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
DF AR+S +EY Y + + L+L M+ A K +G HDF
Sbjct: 96 EEDFHARYSAKGKEYVYLIYNRSIMNPIYKGRASHVFYKLDLDKMKRASKSLIGIHDFAG 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F ++V + R + +I+ + N L IKI GS FL++ VR +VA L IG+
Sbjct: 156 FMG-SGSDVKSTVREIYDIDIT------KDNDLIKIKISGSGFLYNMVRIIVASLIDIGR 208
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSC 351
G + IE +L+T R AP + L L
Sbjct: 209 GRFDENRIEEILETK--QRSMANVTAPAVGLYLNKV 242
>gi|25027130|ref|NP_737184.1| tRNA pseudouridine synthase A [Corynebacterium efficiens YS-314]
gi|23492410|dbj|BAC17384.1| putative tRNA pseudouridine synthase A [Corynebacterium efficiens
YS-314]
Length = 300
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/283 (28%), Positives = 119/283 (42%), Gaps = 50/283 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + + K LE +V + + GRTD GV +
Sbjct: 21 IRLDLDYDGTDFHGWARQGDSD---LRTVQKVLEDNLGMVL-RAPVELTVAGRTDAGVHA 76
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIE-DEIDYVRVLNRVLPKDIRVIGWSPAP 212
GQV + E++Q+ I+ D VR L+R+LP+DIRV G + AP
Sbjct: 77 AGQVAHFDIPR-------------ESLQQRSIDGDPTKLVRRLSRLLPEDIRVHGVNYAP 123
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARFS + R Y Y W + +++ AM++A +G HDF
Sbjct: 124 EGFDARFSALRRHYVYRITTHPAGPLPTRVRDTAAWPKPVDIQAMQTAADVLIGLHDFVA 183
Query: 256 FCKM--DAANV---HNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
FCK +A+ V + H S P QL + AF W VR +V
Sbjct: 184 FCKAKPNASTVRELQEFTWHDVSTPTEP--------QLYEAHVVADAFCWSMVRSLVGSC 235
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G+G + D LL R P +AP L L D+
Sbjct: 236 MAVGEGRRAGDFTAQLL--TATERSPDVPVAPAKGLSLVGVDY 276
>gi|332159317|ref|YP_004424596.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2]
gi|331034780|gb|AEC52592.1| tRNA pseudouridine synthase A [Pyrococcus sp. NA2]
Length = 263
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 127/276 (46%), Gaps = 39/276 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G +F+GF N+ TVE EI KAL + + +D + RTDKGVS+
Sbjct: 3 VALKIAYDGTKFHGFQRQPNIR-TVEGEIIKALNNSGIEYSD-----FKSASRTDKGVSA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G V+AI T ++E+ + + VLN L +D+ ++ P
Sbjct: 57 LGNVVAI------------------TTEDEKALNPM----VLNARL-EDVWILSAIEVPP 93
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF RF S+ Y+Y+ L++ ++ + F+G HDF F K+D + +
Sbjct: 94 DFHPRFWAKSKVYRYYLPSIGLDVERVKECSQLFLGVHDFSAFSKVDERDTIRSIDRIEV 153
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
+ P + I+I +FLW VR +V L + G G S + ++ +L+
Sbjct: 154 LVLGPILV---------IEIEAKSFLWEMVRRIVKALELCGLGKLSAEDVKEMLEGK-FN 203
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
+ + AP L+L ++G++F + A R
Sbjct: 204 KSKKVPPAPPEGLLLVDVKYEGIEFPLNDKALKKFR 239
>gi|227549870|ref|ZP_03979919.1| tRNA-pseudouridine synthase I [Corynebacterium lipophiloflavum DSM
44291]
gi|227078125|gb|EEI16088.1| tRNA-pseudouridine synthase I [Corynebacterium lipophiloflavum DSM
44291]
Length = 285
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 112/281 (39%), Gaps = 46/281 (16%)
Query: 96 LKVMYFGQRFYGFA-----SDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
L + Y G F+G+A DG TV+ I AL + + GRTD G
Sbjct: 10 LDIAYDGTDFHGWARQREQPDGTPTRTVQQTIQSALSTVL-----RTPVELTVAGRTDAG 64
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQV ++I + + S+ D VR L ++LP D+RV G S
Sbjct: 65 VHASGQVA----HADIPAASLDQRSIDG--------DPARLVRRLAKLLPADVRVYGVSA 112
Query: 211 APTDFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDF 253
F ARFS ++R Y Y WR +++ AM+ A FVG HDF
Sbjct: 113 VSPLFDARFSALTRSYVYRVTTHPAGALPTRARDTAVWRRPVDIGAMQVAADAFVGLHDF 172
Query: 254 RNFCKMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
FC+ A H R V E N L + AF W+ VR +VA
Sbjct: 173 AAFCR---AKPHATTVRKVVEMRWVEASTGEEPN-LYEAHVTADAFCWNMVRSLVAACLQ 228
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G+G + +E LL R P +AP L L +
Sbjct: 229 VGEGSKDPTWVEPLLGETT--RHPHVLLAPAKGLTLVDVSY 267
>gi|448414876|ref|ZP_21577825.1| tRNA pseudouridine synthase A [Halosarcina pallida JCM 14848]
gi|445681573|gb|ELZ34003.1| tRNA pseudouridine synthase A [Halosarcina pallida JCM 14848]
Length = 284
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 114/266 (42%), Gaps = 38/266 (14%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL--VADKKESHYSRCGRTDKGVS 152
A ++ Y G+ FYGF ++ PTVE+E+F AL++ AD+K Y+ GRTD GVS
Sbjct: 15 AFRIAYDGRPFYGFQRQPSV-PTVENELFDALDRLGAFDAEADRKPPGYAAAGRTDAGVS 73
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
++GQ + + E T R LN LP D+R + AP
Sbjct: 74 ALGQTVGF----DCPEWCTP--------------------RALNAELPADVRAWAAADAP 109
Query: 213 TDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVT 272
DF A + REY Y + + + + +A GEHDF N D V +
Sbjct: 110 EDFHATHDAVRREYVYDRYAPDADPALARAAADALSGEHDFHNLTGDDDGTVRDL----- 164
Query: 273 SFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI 332
S ++ P + +++ F + VR +V+++ + G S ++ +L +
Sbjct: 165 SVDVDP------DGEFLVVRVAADGFSYELVRRLVSLVHGVAAGDRSPASVKDVLGPEPL 218
Query: 333 PRKPQYNMAPEIPLVLQSCDFDGLKF 358
AP PL+L+ + L F
Sbjct: 219 TGAEAVPAAPPEPLLLERVVYPALTF 244
>gi|297829238|ref|XP_002882501.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328341|gb|EFH58760.1| tRNA pseudouridine synthase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 323
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 118/267 (44%), Gaps = 45/267 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G RF G+ + PT++S + KAL + L +KE H GRTD GV + G
Sbjct: 45 LVIAYDGTRFAGWQYQES-PPTIQSMLEKALIQITEL--GRKELHLIGAGRTDAGVHAWG 101
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N ++ +A+ LN +LPKDIRV S A +F
Sbjct: 102 QVAHFVTPFNYTSLDSFHAA-------------------LNGLLPKDIRVRELSAAVPEF 142
Query: 216 SARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKM 259
ARFS S+ Y+Y + + LN S M A FVG HDF F
Sbjct: 143 HARFSAHSKVYRYQIYNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGMHDFSAFANA 202
Query: 260 DAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + + + ++ F++ + L +++ GS FL+ QVR MVA+L IG+
Sbjct: 203 TREDGLPDPLKTISRFDV------IQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEAL 256
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIP 345
D++ +L+T +Y P P
Sbjct: 257 DSDIVPMILETKDRRVLAKYTTLPAPP 283
>gi|269862152|ref|XP_002650725.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
gi|220065712|gb|EED43331.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
Length = 319
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 112/239 (46%), Gaps = 42/239 (17%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R +ALK+ Y G+ ++G D N ++ + AL T L + + + CGRTD+GV
Sbjct: 65 RKIALKIAYDGRVYHGVQKDPNGL-SIGEVLENALRSTDLYI---ESNDIVFCGRTDRGV 120
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED------------------------ 187
S+ +I++ ++S I E + N + ++ E +
Sbjct: 121 SAANMIISLKIKS-ILETYSANPNYHRHIETETYDTYQFNKKEYKRYLLNNSDFEIKKHD 179
Query: 188 --EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGK 245
E+ Y +LN+VLP IRV GW+P P +FSAR +C R Y YFF L + AG+
Sbjct: 180 AKELPYDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRYTYFFTCPPQLLPKYQEAGR 239
Query: 246 KFVGEHDFRNFC---KMDAANVHNYKRHVTSFE---ISPCYISFEGNQLCAIKIRGSAF 298
DF NFC K+DA NYK ++ E I+P Y S LCA+ I +F
Sbjct: 240 IIYKTEDFYNFCTHSKVDA----NYKFKLSMLEFVSITP-YPSQIQKFLCAMNISAYSF 293
>gi|410930966|ref|XP_003978868.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Takifugu rubripes]
Length = 390
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 136/311 (43%), Gaps = 57/311 (18%)
Query: 71 CKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEK 128
C T ++K + S + K+ VAL + Y G+ +YG + G+ E T+E ++ AL K
Sbjct: 23 CVTKRRKTDVEPSNEDRRYPKKKVALLMAYSGKGYYGMQRNPGSSEFRTIEDDLVAALVK 82
Query: 129 TRLLVA----DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184
+ + D K+ + RC RTDKGVS+ GQV+++ L
Sbjct: 83 SGCIPQNHGDDMKKMSFQRCARTDKGVSAAGQVVSLKL---------------------L 121
Query: 185 IEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG 244
+ D D +N LP IR++G F+++ +C +R Y Y + ++AG
Sbjct: 122 LID--DLTEKINEHLPPQIRILGVKRVTQGFNSKNNCDARTYAYMLPTVAFSPKDFDAAG 179
Query: 245 KK-------------------FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEG 285
+ G H+F NF A N + +R++T +I +
Sbjct: 180 TAPSFRLQPETLQRVNHLFAHYKGTHNFHNFTSQKAPNDPSARRYITHMLCGEPFIRGD- 238
Query: 286 NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL--LDTNGIPRKPQYNMAPE 343
+ I +RG +F+ HQ+R M+ ++ + +G +V+E L +P+ AP
Sbjct: 239 TEFAVITVRGQSFMLHQIRKMIGLVIAVIKGYAGEEVMERSWGLQKVDVPK------APG 292
Query: 344 IPLVLQSCDFD 354
+ LVL+ FD
Sbjct: 293 LGLVLEKVHFD 303
>gi|386859243|ref|YP_006271949.1| tRNA pseudouridine synthase A [Borrelia crocidurae str. Achema]
gi|384934124|gb|AFI30797.1| tRNA pseudouridine synthase A [Borrelia crocidurae str. Achema]
Length = 245
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 116/274 (42%), Gaps = 53/274 (19%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G ++GF +PT++ EI KALEK +K + GRTDKGV + Q+
Sbjct: 8 IAYDGSLYHGFQIQPT-KPTIQGEIEKALEKI-----NKTKVKIQSAGRTDKGVHAKRQI 61
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
I+ Y++ NI N A +N +L DIR+I +F
Sbjct: 62 ISFYIKININLKNLKTA--------------------INSLLKNDIRIIKLKYVSNEFQP 101
Query: 218 RFSCISREYKYFF--------W--------RENLNLSAMESAGKKFVGEHDFRNF-CKMD 260
RF R+Y Y+ W R+ LN++ + + + +G HDF F C D
Sbjct: 102 RFHAKKRKYTYYILNNENHYPWEEYKAYYVRKKLNINRLNTMAEMLIGLHDFTTFSCIRD 161
Query: 261 AANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
N + ++ F+ +I FE I GS+FLW VR +V + I ES+
Sbjct: 162 KTNSKLKEIYLAKFKKKNKFIVFE--------IIGSSFLWKMVRSIVGTMIDIEIKNESV 213
Query: 321 DVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
D + +L + RK AP L L ++
Sbjct: 214 DTLIKILKSKN--RKYARTTAPAKALFLDRVFYE 245
>gi|328955882|ref|YP_004373215.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2]
gi|328456206|gb|AEB07400.1| tRNA pseudouridine synthase A [Coriobacterium glomerans PW2]
Length = 299
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 117/272 (43%), Gaps = 42/272 (15%)
Query: 59 LVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTV 118
+V+E R+ GC T + G F + LK+ Y G R+ GFA + TV
Sbjct: 8 IVDEMRRAPGRGCPTTDLETASG-CGAAAERFSATLVLKLGYDGTRYSGFAEQPD-RCTV 65
Query: 119 ESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGE 178
E+ +A+E T L ++ GRTD GV ++GQ +++ + EC A
Sbjct: 66 AGEVRQAME-TFL----RRPIELICAGRTDAGVHAIGQHVSVAVLP--AECEIPRAR--- 115
Query: 179 TVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKY---------- 228
++R ++ +LP DI V G A FSARF R Y Y
Sbjct: 116 ------------WLRAMDALLPPDISVAGVFRARRGFSARFDARDRTYTYRIAAGSVRPA 163
Query: 229 ----FFWRENLNL--SAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYIS 282
+ W L L AM A VGEHDF++FC+ +A R V + + + S
Sbjct: 164 LIRPYVWWHRLELDEGAMRDAATCLVGEHDFKSFCRASSAAGRPTSRRVLDVDFA--HES 221
Query: 283 FEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
G + A IRG+AFL VR +V L +G
Sbjct: 222 ELGENVLAFTIRGNAFLHSMVRTIVGSLAEVG 253
>gi|356564676|ref|XP_003550576.1| PREDICTED: tRNA pseudouridine synthase A 1-like [Glycine max]
Length = 309
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 126/279 (45%), Gaps = 50/279 (17%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G ++ G+ + PTV+ + KAL TR +K+ RTD GV + G
Sbjct: 30 LVLAYDGTKYAGWQYQQS-PPTVQCTLEKAL--TRATKLQRKDFCLVGASRTDAGVHAWG 86
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + N +A+ LN +LP DIRV SPA +F
Sbjct: 87 QVAHFFTPFNYDNLEELHAA-------------------LNGLLPTDIRVREISPASAEF 127
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
ARFS IS+ Y Y + + LN + M A K FVG+HDF F
Sbjct: 128 HARFSAISKIYHYKIYNDAIMDPFQRHFAYHSVYKLNSAVMREAAKYFVGKHDFSAFA-- 185
Query: 260 DAAN---VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+A+N V + +HV F++ E L I++ GS FL+ QVR MVA+L IG+
Sbjct: 186 NASNNDGVPDPVKHVFRFDLK------EMGALLQIEVEGSGFLYRQVRNMVALLLQIGRE 239
Query: 317 LESIDVIESLLDTNGIPRKPQYNM-APEIPLVLQSCDFD 354
D++ +L + +Y++ AP L L S +++
Sbjct: 240 AIPPDIVPHILASRDRKELAKYSLSAPPHGLCLVSINYN 278
>gi|219853269|ref|YP_002467701.1| tRNA pseudouridine synthase ACD [Methanosphaerula palustris E1-9c]
gi|254789642|sp|B8GFU5.1|TRUA_METPE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|219547528|gb|ACL17978.1| tRNA pseudouridine synthase A [Methanosphaerula palustris E1-9c]
Length = 280
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 44/271 (16%)
Query: 94 VALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+A ++ Y G +F G ++P TVE E+ A ++ +L D ++ ++ GRTD+G
Sbjct: 3 LAFQLSYDGNQFRG----SQLQPAYRTVEGELITACQRVQLF-DDPCKAGFALAGRTDRG 57
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQV + E +E LN L D+ G++
Sbjct: 58 VHARGQV----------------GAFSTPFPERAVE-------ALNGQLSPDLWCNGFAE 94
Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRH 270
P F RF ISR Y+YFF L++ AM+ A +G HDF ++ + R
Sbjct: 95 VPPSFHPRFDAISRTYRYFFADWPLDIRAMDQAAAALIGTHDFSRLARV---REKSPIRT 151
Query: 271 VTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
V S + F+ + ++ +LWH VRCM A L +IG +++E LL +
Sbjct: 152 VKSARV------FQDRGIPVFEVTAHTYLWHMVRCMAAALLLIGTHEREPELMERLL-SG 204
Query: 331 GIPRKPQYNMAPEIPLVLQSCDFDGLKFTCS 361
R P AP LVL D G+ FT +
Sbjct: 205 KCRRNPP--AAPADGLVLWDVDC-GVTFTPT 232
>gi|373859661|ref|ZP_09602387.1| tRNA pseudouridine synthase A [Bacillus sp. 1NLA3E]
gi|372450656|gb|EHP24141.1| tRNA pseudouridine synthase A [Bacillus sp. 1NLA3E]
Length = 245
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 108/238 (45%), Gaps = 52/238 (21%)
Query: 97 KVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY--SRCGRTDKGVSSV 154
KV Y G RF G+ N + TV+SEI KAL+K K +H + GRTD GV +
Sbjct: 7 KVAYTGTRFSGYQVQPN-KRTVQSEIEKALKKIH------KGAHIFINASGRTDAGVHAK 59
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQVI N + E++ ++ LN VLP DI ++ P +
Sbjct: 60 GQVI--------------NFDSSLAISEDR------WIIALNSVLPDDISILQVEKVPAE 99
Query: 215 FSARFSCISREYKYFF----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
F ARF+ + +EY+YF + +LN S + +A + +G HDF +FC
Sbjct: 100 FHARFNAVEKEYRYFLHLSAIRDPFQQYFSYQYSYSLNYSDIVTASRFLIGTHDFTSFCS 159
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ R + E+ FE N L ++ G+ FL++ VR +V L +G G
Sbjct: 160 AKTEK-EDRVRTIHKLEL------FEENGLLVFRVVGNGFLYNMVRILVGTLLEVGNG 210
>gi|409095808|ref|ZP_11215832.1| tRNA pseudouridine synthase A [Thermococcus zilligii AN1]
Length = 269
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 129/303 (42%), Gaps = 40/303 (13%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL++ Y G FYGF + TVE E+ + L+K + + D S + RTD GVS+
Sbjct: 4 LALRIAYDGTAFYGFQRQPGVR-TVEDEVIRVLQKLGI-IRDPVTSEFKGASRTDSGVSA 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
V++ T RVLN L KD+ V+G S P
Sbjct: 62 FFNVVSFVPVPEKAHLATP--------------------RVLNHHL-KDVWVVGVSEVPA 100
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
+F RF + Y+Y+ + M + F+G HDF F + + + R V S
Sbjct: 101 EFHPRFWAKEKTYRYYLIDMGHDFGEMVKCARSFIGTHDFSAFARPEPGR--DPVREVRS 158
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLD---TN 330
E+ P +G + +++ G +FLW VR +V + G GL S + +E +L
Sbjct: 159 IEVIPR----QGYYI--VEVSGKSFLWEMVRRIVNAISYCGLGLLSREDVERMLSGEVDK 212
Query: 331 GIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL 390
IP P N LVL +++G+ F + R + + +AA+F + L
Sbjct: 213 KIPPAPPEN------LVLWRIEYEGITFETDEEGLKKARSEIFSRYSSALARAALFGDWL 266
Query: 391 LNC 393
++
Sbjct: 267 ISL 269
>gi|312136442|ref|YP_004003779.1| tRNA pseudouridine synthase a [Methanothermus fervidus DSM 2088]
gi|311224161|gb|ADP77017.1| tRNA pseudouridine synthase A [Methanothermus fervidus DSM 2088]
Length = 277
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 109/236 (46%), Gaps = 35/236 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ALKV Y G F+GF ++ TVE E+ KAL +T +L + + + GRTDKGV +
Sbjct: 4 IALKVAYIGTHFFGFQRQPDLR-TVEGELIKALVETGIL-DESGVARFRSAGRTDKGVHA 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G V+ + DE + +N LP D+ ++G + P
Sbjct: 62 LGNVVTFFT------------------------DEDVIINQINSCLPDDVYILGKASVPY 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
F R R Y+Y + LN+ M+ A KKF G HDF NF + N R++
Sbjct: 98 GFKTR-YAYRRHYRYVLPNDGLNIELMKEASKKFEGRHDFTNFSR--RVEERNPIRYIEK 154
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
++ + + + + G +FLW VR MV VLF IG+ + I+ LDT
Sbjct: 155 VDV------VDKGEYIWVDVIGESFLWQMVRKMVKVLFDIGKEEYEPEKIDEFLDT 204
>gi|257053070|ref|YP_003130903.1| tRNA pseudouridine synthase A [Halorhabdus utahensis DSM 12940]
gi|256691833|gb|ACV12170.1| tRNA pseudouridine synthase [Halorhabdus utahensis DSM 12940]
Length = 275
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 112/269 (41%), Gaps = 45/269 (16%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV-ADKKESHYSRCGRTDKGVSS 153
A ++ Y G+ F+GF ++ TV I AL + +L D Y+ GRTD GVS+
Sbjct: 8 AFRIAYDGRPFHGFQRQPDVA-TVSDAILDALRELDVLEDGDNVPPGYAAAGRTDAGVSA 66
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR--VLNRVLPKDIRVIGWSPA 211
+ Q +A +C D++ LN LP D+R +
Sbjct: 67 LAQTVAF-------DCP-------------------DWLSPAALNSELPADVRAWASADV 100
Query: 212 PTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHV 271
P +F A ++REY Y + ++S A GEHDF NF D V +
Sbjct: 101 PAEFHATHDAVAREYTYHLHAPDASVSRAGDALDALAGEHDFHNFTPDDTGTVRDLTGEA 160
Query: 272 TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNG 331
S EG+ L + +R F VR V V+ + G+ +D IE LL +
Sbjct: 161 RS----------EGDFLV-VTLRADGFPRQFVRRAVTVIDALASGVAELDRIEQLLGDD- 208
Query: 332 IPRKPQYNMAPEIP--LVLQSCDFDGLKF 358
P + +AP P LVL + ++ GL F
Sbjct: 209 -PVEGPAGVAPAAPEALVLTAVEYPGLSF 236
>gi|429962244|gb|ELA41788.1| tRNA pseudouridine synthase A [Vittaforma corneae ATCC 50505]
Length = 327
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 121/256 (47%), Gaps = 35/256 (13%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
KR VAL++ Y G+ + G +++ +V + AL+ + + CGRTD G
Sbjct: 36 KRKVALRLSYHGENYKGVQHYKHLK-SVHDCLQNALKVSGI------GDGIVFCGRTDAG 88
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
VS++ V+++ + S ++ N + + E +E Y LN +LP DIR+ GW+P
Sbjct: 89 VSAINMVVSVEVNSRLENPNRSYQII------ESDHEEYPYDVALNMLLPDDIRITGWAP 142
Query: 211 APTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKR- 269
P +F+AR+ CI R YKYFF +L+L ME A +K DF + YKR
Sbjct: 143 VPDNFNARYDCIQRHYKYFFALGSLDLKKMEEAVEKICQMDDFYHLSTHSNPKA-IYKRK 201
Query: 270 ------HVTSFEISPCYISFEGN----------QLCAIKIRGSAFLWHQVRCMVAVLFMI 313
H S + S + N L ++ I+ FL + VR + V+
Sbjct: 202 ISEIKIHKVSMQTSLVKMGLTNNAGGNSFSLDDDLYSLDIKAGGFLHNMVRKIFWVVQRC 261
Query: 314 GQG----LESIDVIES 325
G+G L+++++ +S
Sbjct: 262 GKGNPFTLKNVEIADS 277
>gi|242003078|ref|XP_002422603.1| tRNA pseudouridine synthase A, putative [Pediculus humanus
corporis]
gi|212505404|gb|EEB09865.1| tRNA pseudouridine synthase A, putative [Pediculus humanus
corporis]
Length = 410
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 126/297 (42%), Gaps = 51/297 (17%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKES----HYSRCGR 146
KR VAL + Y G ++G + + + T+E E+ AL K L+ ++ ++ H+ R R
Sbjct: 73 KRNVALLMAYNGSNYHGMQKNLDFK-TIEYELLNALVKANLIPSEAIDNLPLIHFQRAAR 131
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ QV++ + E Q E+I N LP+DIRV
Sbjct: 132 TDKGVSAAKQVVSF--------------KIAENFQVEKI----------NMFLPEDIRVF 167
Query: 207 GWSPAPTDFSARFSCISREYKYFF----------------WR-ENLNLSAMESAGKKFVG 249
F+ + C +R Y Y +R + L + +++G
Sbjct: 168 SIKRVTKGFNCKNQCTARTYSYTLPTFALAPEFHDEYPKNYRIDKLTIQKTNEILSQYLG 227
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
H F NF + KR++ SFE + + +K++G +F+ HQ+R MV
Sbjct: 228 THPFHNFTSKKDGRDPSAKRYIMSFE-AEEPFLENEEEFITLKVKGQSFMLHQIRKMVGY 286
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGH 366
+ +G S + I+S + TN K MAP + LVL+ +D D H
Sbjct: 287 TIAVMKGFAS-EAIQSKIWTN---EKVSLPMAPGLGLVLEDVHYDKYNKKFGSDGMH 339
>gi|255556594|ref|XP_002519331.1| pseudouridylate synthase, putative [Ricinus communis]
gi|223541646|gb|EEF43195.1| pseudouridylate synthase, putative [Ricinus communis]
Length = 344
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 120/271 (44%), Gaps = 46/271 (16%)
Query: 74 GKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV 133
G V +K +GT ++ L + Y G R+ G+ + PT++ + KAL + L
Sbjct: 54 GNGDVVKKWTGTSTVDCFKW-RLVIAYDGTRYAGWQFQQS-PPTIQCYLEKALIQVTKL- 110
Query: 134 ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR 193
D+K+ RTD GV + GQV N +T +A+
Sbjct: 111 -DRKDLLLVGASRTDTGVHAFGQVAHFVTPFNYPSLDTIHAA------------------ 151
Query: 194 VLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN----------------LNL 237
LN +LP DIRV SPA +F ARFS IS+ Y Y + + LN
Sbjct: 152 -LNGLLPPDIRVREISPAVPEFHARFSTISKLYHYKIYNDTFMDPFLRHYAYHSTYKLNA 210
Query: 238 SAMESAGKKFVGEHDFRNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGS 296
+AM A K F+G HDF F + V N + + F++ E L +++ G+
Sbjct: 211 AAMRQAAKYFIGSHDFSAFANASRDDRVPNPVKTIFRFDV------IEMGALLQLEVEGT 264
Query: 297 AFLWHQVRCMVAVLFMIGQGLESIDVIESLL 327
FL+ QVR MVA+L IG+ +++ +L
Sbjct: 265 GFLYRQVRNMVALLLQIGKEAVPPEIVPKIL 295
>gi|203283942|ref|YP_002221682.1| pseudouridylate synthase I [Borrelia duttonii Ly]
gi|203287485|ref|YP_002222500.1| pseudouridylate synthase I [Borrelia recurrentis A1]
gi|238690561|sp|B5RLM0.1|TRUA_BORDL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|238690579|sp|B5RQJ5.1|TRUA_BORRA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|201083385|gb|ACH92976.1| pseudouridylate synthase I [Borrelia duttonii Ly]
gi|201084705|gb|ACH94279.1| pseudouridylate synthase I [Borrelia recurrentis A1]
Length = 245
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 115/274 (41%), Gaps = 53/274 (19%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G ++GF +PT++ EI KALEK +K + GRTDKGV + Q+
Sbjct: 8 IAYDGSLYHGFQIQPT-KPTIQGEIEKALEKI-----NKTKVKIQSAGRTDKGVHAKRQI 61
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
I+ Y++ NI N A +N +L DIR+I +F
Sbjct: 62 ISFYIKININLKNLKTA--------------------INSLLKNDIRIIKLKYVSNEFQP 101
Query: 218 RFSCISREYKYFF--------W--------RENLNLSAMESAGKKFVGEHDFRNF-CKMD 260
RF R+Y Y+ W R+ LN++ + + + +G HDF F C D
Sbjct: 102 RFHAKKRKYTYYILNNENHYPWEEYQAYYVRKKLNINRLNTMAEMLIGLHDFTTFSCIRD 161
Query: 261 AANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
N + ++ F+ +I FE I GS+FLW VR +V + I ES+
Sbjct: 162 QTNSKLKEIYLAKFKKKNKFIVFE--------IIGSSFLWKMVRSIVGTMIDIEIKNESV 213
Query: 321 DVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
D +L + RK AP L L ++
Sbjct: 214 DTFIKILKSKN--RKYARTTAPAKALFLDRVFYE 245
>gi|227505250|ref|ZP_03935299.1| tRNA pseudouridine synthase A [Corynebacterium striatum ATCC 6940]
gi|227198149|gb|EEI78197.1| tRNA pseudouridine synthase A [Corynebacterium striatum ATCC 6940]
Length = 285
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 116/277 (41%), Gaps = 43/277 (15%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F+G+A TV+ LE ++ + + + GRTD GV S G
Sbjct: 8 LDLAYDGTDFHGWARQKGDLRTVQG----VLEDNLSMIL-RHDVELTVAGRTDAGVHSAG 62
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIE-DEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
QV + S E + + I+ D VR L ++LP+D+RV + AP
Sbjct: 63 QVAHFDVPS-------------EALDQRSIDGDPAKLVRRLAKLLPEDVRVHACTAAPEG 109
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y Y W + +++ AM+ A VG HDF FC
Sbjct: 110 FDARFSALQRHYVYRITTHPRGALPTRARDTAQWPKPVDIDAMQEAATTLVGLHDFAAFC 169
Query: 258 KMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
K A H R + SFE E QL ++ AF W VR +V +G+G
Sbjct: 170 K---AKPHATTIRDLHSFEWVDVSTPTE-PQLYEARVCADAFCWSMVRSLVGCCLRVGEG 225
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+D ++L + R Q +AP L L D+
Sbjct: 226 ARDVDFATAMLAESQ--RSSQIPLAPAKGLSLVRVDY 260
>gi|390356993|ref|XP_796203.3| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
isoform 2 [Strongylocentrotus purpuratus]
Length = 510
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 128/287 (44%), Gaps = 53/287 (18%)
Query: 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD----KKESHYSRCG 145
KR VA+ + Y G + G + ++ T+E ++ AL K+ + D + + RC
Sbjct: 85 LKRKVAILLSYAGANYVGMQRNPGVQ-TIEEDLVNALVKSGAIPEDCGRNMNKMSFQRCA 143
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTDKGVS+ GQV+++ + M + + E +N LP IRV
Sbjct: 144 RTDKGVSAAGQVVSLKVL------------MLDNLMER-----------INEHLPPVIRV 180
Query: 206 IGWSPAPTDFSARFSCISREYKYF-----------FWRENLNLS--AMESAG---KKFVG 249
+G + F+ + +C R Y Y F E +S +E G KK++G
Sbjct: 181 MGVTRTTGGFNCKNNCEFRTYMYLIPTFAFTPLEDFTLEKYRVSDEKIEEVGEQLKKYIG 240
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
H+F NF A + R++ F ++ +G + IK++G +F+ HQ+R M+ +
Sbjct: 241 THNFHNFTSGKAFTDPSANRYIKEFTCEKGFVD-DGMEFAVIKVKGQSFMLHQIRKMLGL 299
Query: 310 LFMIGQGLESIDVIESLLDTN--GIPRKPQYNMAPEIPLVLQSCDFD 354
+ + +GL +E IPR AP + LVL++ +D
Sbjct: 300 VLAVVRGLTPPSTVERAFQEPKLDIPR------APGLGLVLEAVHYD 340
>gi|254786497|ref|YP_003073926.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901]
gi|237685680|gb|ACR12944.1| tRNA pseudouridine synthase A [Teredinibacter turnerae T7901]
Length = 286
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 120/270 (44%), Gaps = 52/270 (19%)
Query: 76 KKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD 135
K E + G L + VAL V Y G F GF + TV++ + +A+
Sbjct: 7 KPNGEVLPGMLVPEGMQRVALGVEYLGASFRGFQKQASTPDTVQARLERAISAV-----A 61
Query: 136 KKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVL 195
+E GRTD GVS+ GQVI +T+ ++ +++ +
Sbjct: 62 AEEVTLVCAGRTDAGVSASGQVIHF-----------------DTLSSRPLKA---WLQGV 101
Query: 196 NRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRE----------------NLNLSA 239
N LP +RV P F ARFS +SR Y Y+ E +L++
Sbjct: 102 NTHLPDAVRVTWAMPVSFHFHARFSALSRTYHYWIQTEPVRSALFSQQLTWTGHSLDVER 161
Query: 240 MESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFE--GNQLCAIKIRGSA 297
M+ A + +GEHDF +F + H+ R + + +SFE GN L ++R +A
Sbjct: 162 MQLAAESLLGEHDFSSF-RAAQCQAHSPVREIQA-------VSFERYGN-LILFRVRANA 212
Query: 298 FLWHQVRCMVAVLFMIGQGLESIDVIESLL 327
FL H VR ++ L ++G+GL+S IE LL
Sbjct: 213 FLHHMVRNLIGSLMLVGRGLQSPSWIEQLL 242
>gi|313125232|ref|YP_004035496.1| pseudouridylate synthase [Halogeometricum borinquense DSM 11551]
gi|448287171|ref|ZP_21478387.1| tRNA pseudouridine synthase A [Halogeometricum borinquense DSM
11551]
gi|312291597|gb|ADQ66057.1| pseudouridylate synthase I [Halogeometricum borinquense DSM 11551]
gi|445572917|gb|ELY27447.1| tRNA pseudouridine synthase A [Halogeometricum borinquense DSM
11551]
Length = 272
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 111/266 (41%), Gaps = 39/266 (14%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVSS 153
A ++ Y G+ FYGF ++ PTVE IF AL +L D +K + Y+ GRTD GVS+
Sbjct: 3 AFRIAYDGRPFYGFQRQPSV-PTVEDSIFDALRSLGVLDEDARKPTGYAAAGRTDAGVSA 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q +A + E T R +N LP+ +R +
Sbjct: 62 LAQTVAF----DCPEWCTP--------------------RAMNAELPESVRAWAAADVGE 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
F A R Y Y + + S ++A GEHDF N D V R VT
Sbjct: 98 RFHATHDAARRAYVYDLYAPEADESKAQAAADALTGEHDFHNLTPDDTGTV----RDVT- 152
Query: 274 FEISPCYISFEGN-QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI 332
+S E + + + + F ++ VR + +++ + G + IE++L +
Sbjct: 153 -------VSVEADGEFLVLSVAAGGFPYNLVRRLASIVHSVATGDRPLADIETVLGPETV 205
Query: 333 PRKPQYNMAPEIPLVLQSCDFDGLKF 358
P AP PLVL+ + G+ F
Sbjct: 206 PGPEGVPTAPAEPLVLERVVYPGVTF 231
>gi|284166628|ref|YP_003404907.1| Pseudouridine synthase I, TruA, alpha/beta domain-containing
protein [Haloterrigena turkmenica DSM 5511]
gi|284016283|gb|ADB62234.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Haloterrigena turkmenica DSM 5511]
Length = 295
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 110/280 (39%), Gaps = 41/280 (14%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVSS 153
A ++ Y G ++GF ++ PTVE IF AL +L AD + Y+ GRTD GVS+
Sbjct: 5 AFRIAYDGTGYHGFQRQPDV-PTVEDAIFDALRDLEVLAADADRPDGYAAAGRTDAGVSA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q +A+ + R LN LP DIR + AP
Sbjct: 64 LAQTVALEAPDWLTP------------------------RALNGELPADIRAWAAADAPP 99
Query: 214 DFSARFSCISREYKYFFWRENLN-------------LSAMESAGKKFVGEHDFRNFCKM- 259
+F A REY Y + + S G++ V + FR C+
Sbjct: 100 EFHATHHAERREYAYHLYAPPADSRRRDRAAPVSDRAGTRGSPGQRAVDDDRFRAACEAL 159
Query: 260 -DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + HN + E SP + + + F+ VR +V++ +G G
Sbjct: 160 SGSHDFHNLTPDDRNTERSPTLEAIRDGDFLVVTVTAGGFVRELVRRLVSLARAVGTGDA 219
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
++ I+ D +P AP PLVL + D+ L F
Sbjct: 220 PLEKIDRAFDPEPLPGHEGVAPAPPEPLVLTAVDYPDLAF 259
>gi|298705212|emb|CBJ28643.1| pseudouridylate synthase 3 [Ectocarpus siliculosus]
Length = 472
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 48/72 (66%)
Query: 188 EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKF 247
EIDY +LNRVLP +R + W+P FSARFSC R Y+YFF ++++ AM A K
Sbjct: 371 EIDYCGILNRVLPPGVRTLAWAPVTEGFSARFSCSDRTYRYFFMARDMDVKAMNEAASKI 430
Query: 248 VGEHDFRNFCKM 259
VG HDFRN CK+
Sbjct: 431 VGSHDFRNLCKI 442
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 3/80 (3%)
Query: 91 KRYVALKVMYFGQRFYGF--ASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
KR VA+++MY G + GF S+GN E T+E +F+AL T+L+ +YSRCGRTD
Sbjct: 104 KRTVAVQLMYEGGGYAGFCSQSEGNEE-TIEKHLFRALTTTKLVETITTGDNYSRCGRTD 162
Query: 149 KGVSSVGQVIAIYLRSNIKE 168
+GVS++G VI + +RS +
Sbjct: 163 RGVSALGNVITVSMRSKFPK 182
>gi|300779794|ref|ZP_07089650.1| tRNA-pseudouridine synthase I [Corynebacterium genitalium ATCC
33030]
gi|300533904|gb|EFK54963.1| tRNA-pseudouridine synthase I [Corynebacterium genitalium ATCC
33030]
Length = 303
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 121/282 (42%), Gaps = 47/282 (16%)
Query: 96 LKVMYFGQRFYGFA----SDGNMEP--TVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
L + Y G RF+G+A + G P TV+ E+ AL L++ + + GRTD
Sbjct: 22 LDIAYDGTRFHGWARQAAAPGEETPVRTVQGELEDALS---LIL--RHPVELTVAGRTDA 76
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV + GQV +++ + + S+ + + R L R+L D+RV +
Sbjct: 77 GVHATGQVA----HADVPKHALDQRSI--------VGEPEKLTRRLARLLEPDLRVTAVT 124
Query: 210 PAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHD 252
AP DF ARFS ++R Y+Y W + ++L A++ VG +D
Sbjct: 125 EAPRDFDARFSALTRTYRYRVTTNTAGPNPLRRTDTAAWTKKIDLHAVQETATALVGLND 184
Query: 253 FRNFCKMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
+ FCK H R + SF + E +L I AF WH VR +VA
Sbjct: 185 YAAFCK---PRPHATTIRDIHSFTWADVSTP-EEPELYEATITADAFCWHMVRALVATCL 240
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G G + ++LL + R P +AP L L D+
Sbjct: 241 DVGSGARDVSWAKTLLAAHE--RDPLVKLAPANGLTLIRVDY 280
>gi|379714682|ref|YP_005303019.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
316]
gi|377653388|gb|AFB71737.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
316]
Length = 318
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 119/283 (42%), Gaps = 50/283 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVS 152
+ L + Y G F+G+A G + TV+ + +LE L++ + + GRTD GV
Sbjct: 37 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLE---LIL--RHPIQLTVAGRTDAGVH 91
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQV ++ + S+ D + VR L R+LP+D+RV + AP
Sbjct: 92 AAGQVAHF----DVPAIALDTRSIDG--------DPRNLVRRLARLLPEDVRVHACTLAP 139
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARFS + R Y Y W + +++ AM++A +G HDF
Sbjct: 140 EGFDARFSALRRHYVYRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAA 199
Query: 256 FCK-----MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
FCK ++ + H S + P QL + AF W VR +V
Sbjct: 200 FCKHREGATTIRDLQEFTWHDVSTSLEP--------QLYEAHVTADAFCWSMVRSLVGSC 251
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+IG+G ++SLL R Q +AP L L D+
Sbjct: 252 LVIGEGKRPEGFVDSLLTETS--RSSQVPVAPAKGLSLVGVDY 292
>gi|300857811|ref|YP_003782794.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
FRC41]
gi|375287978|ref|YP_005122519.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
3/99-5]
gi|384506086|ref|YP_005682755.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
C231]
gi|384508176|ref|YP_005684844.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
I19]
gi|386739747|ref|YP_006212927.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
31]
gi|387135943|ref|YP_005691923.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
42/02-A]
gi|387138003|ref|YP_005693982.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|392399951|ref|YP_006436551.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
Cp162]
gi|300685265|gb|ADK28187.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
FRC41]
gi|302205546|gb|ADL09888.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
C231]
gi|308275782|gb|ADO25681.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
I19]
gi|348606388|gb|AEP69661.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
42/02-A]
gi|349734481|gb|AEQ05959.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
CIP 52.97]
gi|371575267|gb|AEX38870.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
3/99-5]
gi|384476441|gb|AFH90237.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
31]
gi|390531029|gb|AFM06758.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
Cp162]
Length = 291
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 119/283 (42%), Gaps = 50/283 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVS 152
+ L + Y G F+G+A G + TV+ + +LE L++ + + GRTD GV
Sbjct: 10 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLE---LIL--RHPIQLTVAGRTDAGVH 64
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQV ++ + S+ D + VR L R+LP+D+RV + AP
Sbjct: 65 AAGQVAHF----DVPAIALDTRSIDG--------DPRNLVRRLARLLPEDVRVHACTLAP 112
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARFS + R Y Y W + +++ AM++A +G HDF
Sbjct: 113 EGFDARFSALRRHYVYRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAA 172
Query: 256 FCK-----MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
FCK ++ + H S + P QL + AF W VR +V
Sbjct: 173 FCKHREGATTIRDLQEFTWHDVSTSLEP--------QLYEAHVTADAFCWSMVRSLVGSC 224
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+IG+G ++SLL R Q +AP L L D+
Sbjct: 225 LVIGEGKRPEGFVDSLLTETS--RSSQVPVAPAKGLSLVGVDY 265
>gi|390356991|ref|XP_003728903.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 512
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/287 (26%), Positives = 128/287 (44%), Gaps = 53/287 (18%)
Query: 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD----KKESHYSRCG 145
KR VA+ + Y G + G + ++ T+E ++ AL K+ + D + + RC
Sbjct: 87 LKRKVAILLSYAGANYVGMQRNPGVQ-TIEEDLVNALVKSGAIPEDCGRNMNKMSFQRCA 145
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTDKGVS+ GQV+++ + M + + E +N LP IRV
Sbjct: 146 RTDKGVSAAGQVVSLKVL------------MLDNLMER-----------INEHLPPVIRV 182
Query: 206 IGWSPAPTDFSARFSCISREYKYF-----------FWRENLNLS--AMESAG---KKFVG 249
+G + F+ + +C R Y Y F E +S +E G KK++G
Sbjct: 183 MGVTRTTGGFNCKNNCEFRTYMYLIPTFAFTPLEDFTLEKYRVSDEKIEEVGEQLKKYIG 242
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
H+F NF A + R++ F ++ +G + IK++G +F+ HQ+R M+ +
Sbjct: 243 THNFHNFTSGKAFTDPSANRYIKEFTCEKGFVD-DGLEFAVIKVKGQSFMLHQIRKMLGL 301
Query: 310 LFMIGQGLESIDVIESLLDTN--GIPRKPQYNMAPEIPLVLQSCDFD 354
+ + +GL +E IPR AP + LVL++ +D
Sbjct: 302 VLAVVRGLTPPSTVERAFQEPKLDIPR------APGLGLVLEAVHYD 342
>gi|384514984|ref|YP_005710076.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 809]
gi|334696185|gb|AEG80982.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 809]
Length = 291
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 120/283 (42%), Gaps = 50/283 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVS 152
+ L + Y G F+G+A G + TV+ + +LE L++ + + GRTD GV
Sbjct: 10 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLE---LIL--RHPIQLTVAGRTDAGVH 64
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQV ++ E + S+ D + VR L R+LP+D+RV + AP
Sbjct: 65 AAGQVAHF----DVPEAALDTRSIDG--------DPRNLVRRLARLLPEDVRVHACTRAP 112
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARFS + R Y Y W + ++++AM++A +G HDF
Sbjct: 113 EGFDARFSALRRHYVYRLTTHPRGALPTRATDTAHWPKQIDMNAMQAAADVLIGLHDFAA 172
Query: 256 FCKMDAA-----NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
FCK ++ + H S + P QL + AF W VR +V
Sbjct: 173 FCKYREGATTIRDLQEFTWHDVSTPLEP--------QLYEAHVTADAFCWSMVRSLVGSC 224
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+IG+G +SLL R + +AP L L D+
Sbjct: 225 LVIGEGKRPEGFADSLLTETS--RSSRVPVAPAKGLSLVGVDY 265
>gi|221195458|ref|ZP_03568513.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626]
gi|221184645|gb|EEE17037.1| tRNA pseudouridine synthase A [Atopobium rimae ATCC 49626]
Length = 281
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 122/256 (47%), Gaps = 44/256 (17%)
Query: 80 EKMSGTLNHHFKRYVA----LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD 135
E M T++ H A +K+ Y G F GFA TV ++ +AL T +L
Sbjct: 2 ENMPQTVHAHDAVLPAATLVIKLGYRGAAFSGFAEQPKQR-TVAGDLKQAL--TTVL--- 55
Query: 136 KKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVL 195
++ + GRTD GVS++ Q +++ + ++ EE+I +R L
Sbjct: 56 RRPVELTCAGRTDAGVSALAQYVSVPVDAH----------------EEKIPKR-QLLRSL 98
Query: 196 NRVLPKDIRVIGWSPAPTDFSARFSCISREYKY---------------FFWRENLNLSAM 240
+ DI + A + FSARF ++R Y+Y +++ L+++AM
Sbjct: 99 TALTDDDISIQEIYKAQSGFSARFDALARSYRYRISAGLRPVLAWDHAWWYNGALDVAAM 158
Query: 241 ESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLW 300
A + FVGEHDF++FCK +A R+V S +++ I G +L AI I G+AFL
Sbjct: 159 NEAAQIFVGEHDFKSFCKALSAVDKPTHRYVESIQVAE--IQEAGEKLIAIDIVGNAFLH 216
Query: 301 HQVRCMVAVLFMIGQG 316
VR MV L +G+G
Sbjct: 217 TMVRTMVGTLVEVGRG 232
>gi|383313577|ref|YP_005374432.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
P54B96]
gi|384503997|ref|YP_005680667.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1002]
gi|384510271|ref|YP_005689849.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
PAT10]
gi|385806846|ref|YP_005843243.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
267]
gi|387140031|ref|YP_005696009.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1/06-A]
gi|389849750|ref|YP_006351985.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
258]
gi|302330101|gb|ADL20295.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1002]
gi|341824210|gb|AEK91731.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
PAT10]
gi|355391822|gb|AER68487.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
1/06-A]
gi|380869078|gb|AFF21552.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
P54B96]
gi|383804239|gb|AFH51318.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
267]
gi|388247056|gb|AFK16047.1| tRNA pseudouridine synthase A [Corynebacterium pseudotuberculosis
258]
Length = 319
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 119/283 (42%), Gaps = 50/283 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVS 152
+ L + Y G F+G+A G + TV+ + +LE L++ + + GRTD GV
Sbjct: 38 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLE---LIL--RHPIQLTVAGRTDAGVH 92
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQV ++ + S+ D + VR L R+LP+D+RV + AP
Sbjct: 93 AAGQVAHF----DVPAIALDTRSIDG--------DPRNLVRRLARLLPEDVRVHACTLAP 140
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARFS + R Y Y W + +++ AM++A +G HDF
Sbjct: 141 EGFDARFSALRRHYVYRLTTHPRGALPTRATDTAHWPKRIDIDAMQAAADVLIGLHDFAA 200
Query: 256 FCK-----MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
FCK ++ + H S + P QL + AF W VR +V
Sbjct: 201 FCKHREGATTIRDLQEFTWHDVSTSLEP--------QLYEAHVTADAFCWSMVRSLVGSC 252
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+IG+G ++SLL R Q +AP L L D+
Sbjct: 253 LVIGEGKRPEGFVDSLLTETS--RSSQVPVAPAKGLSLVGVDY 293
>gi|448734702|ref|ZP_21716923.1| tRNA pseudouridine synthase A [Halococcus salifodinae DSM 8989]
gi|445799611|gb|EMA49985.1| tRNA pseudouridine synthase A [Halococcus salifodinae DSM 8989]
Length = 275
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 107/276 (38%), Gaps = 37/276 (13%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL-VADKKESHYSRCGRTDKGVSS 153
A +V Y GQ +YGF ++ PTVE +F L + +L A K Y+ GRTD+GVS+
Sbjct: 10 AFRVAYDGQPYYGFQRQPDV-PTVEDAVFNGLRELDVLDAAADKPPAYAAAGRTDRGVSA 68
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
V Q +A EC E LN LP IR + AP
Sbjct: 69 VAQTVAF-------ECP-----------------EWLTPAALNGELPATIRAWASAEAPA 104
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
+F A +R Y Y ++ A GEHD N D+ V
Sbjct: 105 EFHATHDATARTYTYHLHAPAADVDRAREALSVLAGEHDLHNLTLDDSGTVRT------- 157
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
+ P I +G L I++R F VR +VA++ + G + I +L +
Sbjct: 158 --LEPA-IEPDGEFLV-IELRAGGFSRQLVRRIVALVRDVATGAAPLSKIGRVLSPTPLS 213
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
AP PLVL + GL F +A R
Sbjct: 214 GPEGVGPAPAAPLVLTDVSYPGLDFHVDSEAATSAR 249
>gi|89953446|gb|ABD83318.1| Fgenesh protein 88 [Beta vulgaris]
Length = 278
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 103/231 (44%), Gaps = 44/231 (19%)
Query: 116 PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNAS 175
PTV+ I KAL K L D+KE GRTD GV + GQV + N + +A+
Sbjct: 33 PTVQCAIEKALTKITHL--DRKELSVVGAGRTDTGVHAWGQVAHFFTPFNYDSLDEVHAA 90
Query: 176 MGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN- 234
N +LP DIRV SPA F ARFS + Y+Y + +
Sbjct: 91 -------------------FNGLLPSDIRVREVSPASPQFHARFSAKGKIYRYSIYNSSF 131
Query: 235 ---------------LNLSAMESAGKKFVGEHDFRNFCK-MDAANVHNYKRHVTSFEISP 278
LN + M A + F G+HDF F + V + + ++ F+++
Sbjct: 132 MDPFLRYHVYHSTYKLNAAVMAEAARYFTGKHDFTAFANAIRNDRVRDPIKTISRFDVT- 190
Query: 279 CYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
E L +++ GS FL+ QVR MVA+L IG+ D++ +L+T
Sbjct: 191 -----ERGPLLELEVEGSGFLYRQVRNMVALLLQIGREAIPPDIVPEILET 236
>gi|296168687|ref|ZP_06850436.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896596|gb|EFG76237.1| tRNA pseudouridine synthase A [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 302
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 113/276 (40%), Gaps = 41/276 (14%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ TV + +AL T L A + GRTD GV + G
Sbjct: 31 LDIAYDGTEFAGWATQAGQR-TVAGVLDEAL--TTLFRAPMR---LRAAGRTDTGVHATG 84
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + N V E + + VR L R LP D+RV+G + AP F
Sbjct: 85 QVAHVDV---PPDALPNAYPRAPRVGEPEF---LPLVRRLGRFLPTDVRVLGIARAPAGF 138
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y Y W L++ AM +A + VG HDF FC+
Sbjct: 139 DARFSALRRHYTYRLSTAPYGVEPQRARYVTAWPRPLDVDAMAAASRDLVGLHDFAGFCR 198
Query: 259 MDAANVHNYKRHVTSF-EISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
++ + T+ ++ S +G +L + AF W VR +V L +G+
Sbjct: 199 --------HRPNATTIRDLQGLDWSRDG-ELITAHVTADAFCWSMVRSLVGALLAVGEHR 249
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL R + AP L L D+
Sbjct: 250 RPVSWCRGLLTATS--RSSDFAAAPPHGLTLVGVDY 283
>gi|269866402|ref|XP_002652261.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
gi|220062857|gb|EED41795.1| tRNA pseudouridine synthase A [Enterocytozoon bieneusi H348]
Length = 268
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 102/214 (47%), Gaps = 38/214 (17%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R +ALK+ Y G+ ++G D N ++ + AL+ T L + + + CGRTD+GV
Sbjct: 58 RKIALKIAYDGRVYHGVQKDPNGL-SIGEVLENALKSTDLYI---ESNDIVFCGRTDRGV 113
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE------------------------- 186
S+ +I++ ++S I E + N + ++ E +
Sbjct: 114 SAANMIISLKIKS-ILETYSANPNYHRHIETETYDTYQFNKKEYKRYLLNNSDFEIKKHD 172
Query: 187 -DEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGK 245
E+ Y +LN+VLP IRV GW+P P +FSAR +C R Y YFF L + AG+
Sbjct: 173 AKELPYDLILNKVLPPQIRVKGWAPVPWNFSARHNCCQRRYTYFFTCPPQLLPKYQEAGR 232
Query: 246 KFVGEHDFRNFC---KMDAANVHNYKRHVTSFEI 276
DF NFC K+DA NYK ++ E+
Sbjct: 233 IIYKTEDFYNFCTHSKVDA----NYKFKLSMLEL 262
>gi|397653243|ref|YP_006493926.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 0102]
gi|393402199|dbj|BAM26691.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans 0102]
Length = 291
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 120/283 (42%), Gaps = 50/283 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVS 152
+ L + Y G F+G+A G + TV+ + +LE L++ + + GRTD GV
Sbjct: 10 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLE---LIL--RHPIQLTVAGRTDAGVH 64
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQV ++ E + S+ D + VR L R+LP+D+RV + AP
Sbjct: 65 AAGQVAHF----DVPEAALDTRSIDG--------DPRNLVRRLARLLPEDVRVHACTRAP 112
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARFS + R Y Y W + ++++AM++A +G HDF
Sbjct: 113 EGFDARFSALRRHYVYRLTTHPRGALPTRATDTAHWPKQIDMNAMQAAADVLIGLHDFAA 172
Query: 256 FCKMDAA-----NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
FCK ++ + H S + P QL + AF W VR +V
Sbjct: 173 FCKYREGATTIRDLQEFTWHDVSTPLEP--------QLYEAHVTADAFCWSMVRSLVGSC 224
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+IG+G +SLL R + +AP L L D+
Sbjct: 225 LVIGEGKRPEGFADSLLTETS--RSSRVPVAPAKGLNLVGVDY 265
>gi|118782859|ref|XP_312543.3| AGAP002409-PA [Anopheles gambiae str. PEST]
gi|116129767|gb|EAA08062.3| AGAP002409-PA [Anopheles gambiae str. PEST]
Length = 451
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 126/294 (42%), Gaps = 59/294 (20%)
Query: 100 YFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK-----KESHYSRCGRTDKGVSSV 154
Y G ++G + + T+E ++ +A++K R + D+ ++ + R RTDKGVS+
Sbjct: 119 YSGVNYFGMQRNPGTK-TIEEDLLRAMQK-REWINDEGFRQPQQIQFQRAARTDKGVSAA 176
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
QV++I L N+ + LN LP+DIRV
Sbjct: 177 MQVVSIKLPDNLD------------------------IEALNSELPEDIRVYAVKRVTKG 212
Query: 215 FSARFSCISREYKYFFW-------RENLNLSAMESAGKK----------FVGEHDFRNFC 257
F+++ +C +R Y Y E +++ ++ +VG +F NF
Sbjct: 213 FNSKTNCDARTYTYTLPTIAFAPNEEKVDIQTYRLPAERLARVNEVLALYVGTKNFHNFT 272
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGN--QLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
+ KR + SFE P ++ EG+ + IKI+G +F+ HQ+R MV + + +
Sbjct: 273 SRKEFLDPSVKRFIMSFECDPPFLP-EGSTAEFATIKIKGQSFMLHQIRKMVGLTIAVVR 331
Query: 316 GLESIDVIESLL--DTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
GL D+IE D GIP AP + LVL +D D H+
Sbjct: 332 GLAESDIIEKAFGQDRYGIP------TAPGLGLVLSRIHYDKYNKRYGEDGCHE 379
>gi|329767334|ref|ZP_08258859.1| tRNA pseudouridine synthase A [Gemella haemolysans M341]
gi|328836023|gb|EGF85714.1| tRNA pseudouridine synthase A [Gemella haemolysans M341]
Length = 265
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 115/256 (44%), Gaps = 56/256 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL Y G ++GF N T++ EI K+L+K +KK+ GRTD GV +
Sbjct: 3 IALLCRYDGSNYHGFQIQPN-NNTIQEEIEKSLKKI-----NKKDVRLYMSGRTDSGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ NI + + +V+ LN +PKDIR++G +
Sbjct: 57 YGQVLHFDTDLNIPD--------------------VAWVKALNATIPKDIRIVGATTVSE 96
Query: 214 DFSARFSCISREYKY--FFWRE--------------NLNLSAMESAGKKFVGEHDFRNFC 257
DF R++ + Y Y + RE + N + + K F+GEHDF +FC
Sbjct: 97 DFHVRYNSTQKTYYYKLYIGREIDPFLLNYVGKHSFDFNFEKAQESLKYFIGEHDFSSFC 156
Query: 258 KMDAANVHNYKRHVTSF-----EISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
+++ V + R + S I+P ++FE I G+ FL++ VR ++ +
Sbjct: 157 SKNSS-VEDKVRTIYSLTMGKDPINPNIVNFE--------ITGNGFLYNMVRIIIGTIQN 207
Query: 313 IGQGLESIDVIESLLD 328
+ G D I+ +LD
Sbjct: 208 VAAGKYEADYIKEILD 223
>gi|453075587|ref|ZP_21978373.1| tRNA pseudouridine synthase TruA [Rhodococcus triatomae BKS 15-14]
gi|452763013|gb|EME21300.1| tRNA pseudouridine synthase TruA [Rhodococcus triatomae BKS 15-14]
Length = 262
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 98/231 (42%), Gaps = 35/231 (15%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDI 203
GRTD GV + GQV C+ + G+ E ++D VR L R LP D+
Sbjct: 22 AGRTDAGVHASGQV---------AHCDIGSRRDGDL--SEHLDDPDRLVRRLARFLPPDV 70
Query: 204 RVIGWSPAPTDFSARFSCISREYKYFFWR-----------------ENLNLSAMESAGKK 246
RV P P +F ARFS I R Y+Y + L+L AM +A
Sbjct: 71 RVTAIGPVPAEFDARFSAIRRHYEYRITTARYGAEPLRARDTVSVPKKLDLDAMRAASHA 130
Query: 247 FVGEHDFRNFCKM--DAANVHNYKRH--VTSFEISPCYISFEGNQLCAIKIRGSAFLWHQ 302
+G HDF FC+ A V + +R V S E S + G ++ + AF W
Sbjct: 131 LLGLHDFAAFCRRREGATTVRDLQRFDWVRSDENS-VRSAGSGGEILTAFVSADAFCWSM 189
Query: 303 VRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
VR +V + +G+G ++D SLL R +AP L L D+
Sbjct: 190 VRSLVGAVLAVGEGRRTVDWTASLLQER--ERSSSVLVAPAHGLSLVRVDY 238
>gi|240103716|ref|YP_002960025.1| tRNA pseudouridine synthase A [Thermococcus gammatolerans EJ3]
gi|259550472|sp|C5A7E9.1|TRUA_THEGJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|239911270|gb|ACS34161.1| tRNA-pseudouridine synthase A (truA) [Thermococcus gammatolerans
EJ3]
Length = 267
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/301 (26%), Positives = 129/301 (42%), Gaps = 41/301 (13%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL++ Y G FYGF + TVE E+ L K +++ + +K + + RTD+GVS+
Sbjct: 3 LALRIAYDGTAFYGFQRQPGIR-TVEGELINVLTKLKIIESPEK-NDFKGASRTDRGVSA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
V++ GE + E VLN L D+ V+G + P
Sbjct: 61 FFNVVSF--------------VPGERADLARPE-------VLNHNL-HDLWVLGVAEVPD 98
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF RF IS+ Y+Y+ E L M K F G HDF F +++ + R +T
Sbjct: 99 DFHPRFWAISKTYRYYLIDEGFELEKMVGCAKLFEGRHDFSAFARLEPGR--DPVREITH 156
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL---ESIDVIESLLDTN 330
I+P + + I+I G +FLW VR +V L G L E + + S +
Sbjct: 157 ISITPRHGYY------VIEITGKSFLWEMVRRIVNALRFCGLSLLEPEEVGAMLSGVYEK 210
Query: 331 GIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL 390
+P P N L+L ++ ++F + R L +AA+F + L
Sbjct: 211 KVPPAPPEN------LILWHIEYPNVEFKTDGKSLSKARRDLFERYSRALARAALFGDCL 264
Query: 391 L 391
+
Sbjct: 265 V 265
>gi|340795279|ref|YP_004760742.1| tRNA pseudouridine synthase A [Corynebacterium variabile DSM 44702]
gi|340535189|gb|AEK37669.1| tRNA pseudouridine synthase A [Corynebacterium variabile DSM 44702]
Length = 280
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 116/277 (41%), Gaps = 37/277 (13%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L V Y G F+G+A + + + + + + +L + + + GRTD GV +
Sbjct: 4 VRLDVAYDGTDFHGWARQKGPQEALRT--VQGVLEEKLSLVFRTPVELTVAGRTDAGVHA 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + ++ G+ +E D VR L+R+LP D+R+ G S A
Sbjct: 62 TGQVAHV---------DVPASAFGQ----RSLEQPSDLVRRLSRMLPADVRLHGASAAAP 108
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y WR +++LSA++ A VG HDF F
Sbjct: 109 GFDARFSALRRHYVYRVTTSMAGPSPLRVRDTAQWRHSVDLSAVQLASDVLVGLHDFAAF 168
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
CK + R + SFE E A + AF W VR +V + +G+G
Sbjct: 169 CKYREGS--TTVRELQSFEWRDISTPTEPETYEA-SVVADAFCWSMVRSLVGAVLTVGEG 225
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
LL R + +AP L L + D+
Sbjct: 226 RRDEGFASCLLQERS--RSSKVPVAPACGLNLVAVDY 260
>gi|227502701|ref|ZP_03932750.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49725]
gi|227076431|gb|EEI14394.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49725]
Length = 293
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 115/279 (41%), Gaps = 43/279 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A TV+ LE+ ++A + E + GRTD GV +
Sbjct: 19 IRLDLAYDGTDFHGWARQKGGLRTVQG----VLEEQLAMIA-RTEVPLTVAGRTDAGVHA 73
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + + E Q D VR L ++LP+D+RV G AP
Sbjct: 74 RGQVAHVDVPQEMLE------------QRSVANDPGKLVRRLAKLLPEDVRVHGCDFAPE 121
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y W + +++ AM+ A VG HDF F
Sbjct: 122 GFDARFSALRRHYVYRITTSPRGALPTRARDTAEWFKPVDIGAMQDAANALVGLHDFAAF 181
Query: 257 CKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
CK +A + + +P E QL ++ AF W VR +V +G
Sbjct: 182 CKAKPNATTIRELQEFSWQDVSTP-----EEPQLFEARVTADAFCWSMVRSLVGCCLSVG 236
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G +D +LL R + +AP L L D+
Sbjct: 237 EGRRDVDFAAALLQETK--RSSRIPVAPAKGLSLVQVDY 273
>gi|301604562|ref|XP_002931922.1| PREDICTED: tRNA pseudouridine synthase A [Xenopus (Silurana)
tropicalis]
Length = 399
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 138/324 (42%), Gaps = 63/324 (19%)
Query: 59 LVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASD-GNME-P 116
L EE+ E G + KK K H KR V L + Y G+ ++G + G+ +
Sbjct: 24 LQEESEGQEKNGHQA--KKFKADQEELSKKHPKRKVVLLMAYSGKGYHGMQRNVGSSQFK 81
Query: 117 TVESEIFKALEKTRLL----VADKKESHYSRCGRTDKGVSSVGQVIA--IYLRSNIKECN 170
T+E E+ +AL + + D K+ + RC RTDKGVS+ GQV++ I+L N+
Sbjct: 82 TIEDELVQALVLSGCIPDNHAEDMKKMSFQRCARTDKGVSAAGQVVSLKIWLIDNV---- 137
Query: 171 TNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF 230
V +N LP IR++G F+++ SC +R Y Y
Sbjct: 138 ---------------------VEKINENLPSHIRILGLKRVTGRFNSKNSCDARTYSYTL 176
Query: 231 ------------WRENLNLSAMESAGKK------FVGEHDFRNFCKMDAANVHNYKRHVT 272
EN LS E+ + + G +F NF + KR++
Sbjct: 177 PTFAFSHKDKEAQDENFRLS-QETLNRVNELLALYKGTRNFHNFTSQKGPRDPSAKRYIM 235
Query: 273 SFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLL--DTN 330
P + G +L IK++G +F+ HQ+R M+ ++ + +G +IE +
Sbjct: 236 EMHCEPPFQQG-GLELAVIKVKGQSFMMHQIRKMIGLVIAVVKGFAPTSIIERSWGEEKV 294
Query: 331 GIPRKPQYNMAPEIPLVLQSCDFD 354
IP+ AP + LVL+ F+
Sbjct: 295 DIPK------APGLGLVLERVHFE 312
>gi|311745752|ref|ZP_07719537.1| tRNA pseudouridine synthase A [Algoriphagus sp. PR1]
gi|311302425|gb|EAZ79545.2| tRNA pseudouridine synthase A [Algoriphagus sp. PR1]
Length = 274
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 132/294 (44%), Gaps = 50/294 (17%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
+ Y+G R+ G+A N + TV+ + LE+ V ++ RTD GVS VG
Sbjct: 10 FSISYYGARYKGWAPQPNQQ-TVQ----RRLERVLRHVLGHEDFSLIGASRTDSGVSCVG 64
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID-YVRVLNRVLPKDIRVIGWSPAPTD 214
+ ++LR + E+D + N LP+DI + T
Sbjct: 65 GFVQVFLRDEV---------------------EMDLLLPQFNEHLPQDIHLNSVKEVSTT 103
Query: 215 FSARFSCISREYKYFF----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
F+ S + Y+Y+F E LN AM A K F+G+HDF++FCK
Sbjct: 104 FNLIQSVKKKTYRYYFSNSSDFHPFASAFMVNASEELNWEAMNEACKSFIGKHDFKSFCK 163
Query: 259 MDAANVHNYKRHVTSFEI---SPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
+ N +Y R V S EI + + +++ +I G+ FL HQVR M++ L+ IG+
Sbjct: 164 -PSENKTDYNREVLSAEICDSNEFMGQYFPHKIYYFQITGTGFLHHQVRMMMSALWQIGK 222
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
G + IE+ +++ R + AP LVL D L+ +L+ G DL+
Sbjct: 223 GEMDLSEIEARFESSD--RFEKLPPAPANGLVLWETILDNLRGFPNLE-GFDLQ 273
>gi|289581033|ref|YP_003479499.1| pseudouridine synthase I TruA [Natrialba magadii ATCC 43099]
gi|289530586|gb|ADD04937.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Natrialba magadii ATCC 43099]
Length = 293
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 112/300 (37%), Gaps = 61/300 (20%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVSS 153
A ++ Y G +YGF ++ PTVE +F AL +L D K + Y+ GRTD GVS+
Sbjct: 3 AFRLAYDGTGYYGFQRQPDV-PTVEDAMFDALRALDVLAPDADKPAGYAAAGRTDAGVSA 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q +A + R N LP DIR + AP
Sbjct: 62 LAQTVAFEAPDWLTP------------------------RAFNGELPADIRAWAAADAPD 97
Query: 214 DFSARFSCISREYKYFFWRENLNLSA------------------------MESAGKKFVG 249
+F A REY Y+ + N A ++A G
Sbjct: 98 EFHATHHAREREYTYYLYAPPANDDAPPASDTDEDHAGTPVTAHTVDDDRFQAACDALSG 157
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
HDF N D HN +R SP S + + F VR +V++
Sbjct: 158 PHDFHNLTPDD----HNTER-------SPVLESTRDGHFRILTVTAGGFCRELVRRLVSL 206
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
+G G ++ IE L+++ +P AP PLVL ++ L+F +A R
Sbjct: 207 ARDVGTGEANLQTIERALESDPLPGHEGIAPAPPEPLVLTDVEYGVLEFAVDEEAAESAR 266
>gi|337290062|ref|YP_004629083.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans BR-AD22]
gi|334698368|gb|AEG83164.1| tRNA pseudouridine synthase A [Corynebacterium ulcerans BR-AD22]
Length = 291
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 120/283 (42%), Gaps = 50/283 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVS 152
+ L + Y G F+G+A G + TV+ + +LE L++ + + GRTD GV
Sbjct: 10 IRLDLAYDGTHFHGWARQGTSQLRTVQRVLEDSLE---LIL--RHPIQLTVAGRTDAGVH 64
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQV ++ E + S+ + + VR L R+LP+D+RV + AP
Sbjct: 65 AAGQVAHF----DVPEAALDTRSIDGNPR--------NLVRRLARLLPEDVRVHACTRAP 112
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARFS + R Y Y W + ++++AM++A +G HDF
Sbjct: 113 EGFDARFSALRRHYVYRLTTHPRGALPTRATDTAHWPKQIDMNAMQAAADVLIGLHDFAA 172
Query: 256 FCKMDAA-----NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
FCK ++ + H S + P QL + AF W VR +V
Sbjct: 173 FCKYREGATTIRDLQEFTWHDVSTPLEP--------QLYEAHVTADAFCWSMVRSLVGSC 224
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+IG+G +SLL R + +AP L L D+
Sbjct: 225 LVIGEGKRPEGFADSLLTETS--RSSRVPVAPAKGLSLVGVDY 265
>gi|448284702|ref|ZP_21475958.1| tRNA pseudouridine synthase A [Natrialba magadii ATCC 43099]
gi|445569412|gb|ELY23985.1| tRNA pseudouridine synthase A [Natrialba magadii ATCC 43099]
Length = 321
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 112/300 (37%), Gaps = 61/300 (20%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVSS 153
A ++ Y G +YGF ++ PTVE +F AL +L D K + Y+ GRTD GVS+
Sbjct: 31 AFRLAYDGTGYYGFQRQPDV-PTVEDAMFDALRALDVLAPDADKPAGYAAAGRTDAGVSA 89
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q +A + R N LP DIR + AP
Sbjct: 90 LAQTVAFEAPDWLTP------------------------RAFNGELPADIRAWAAADAPD 125
Query: 214 DFSARFSCISREYKYFFWRENLNLSA------------------------MESAGKKFVG 249
+F A REY Y+ + N A ++A G
Sbjct: 126 EFHATHHAREREYTYYLYAPPANDDAPPASDTDEDHAGTPVTAHTVDDDRFQAACDALSG 185
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
HDF N D HN +R SP S + + F VR +V++
Sbjct: 186 PHDFHNLTPDD----HNTER-------SPVLESTRDGHFRILTVTAGGFCRELVRRLVSL 234
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
+G G ++ IE L+++ +P AP PLVL ++ L+F +A R
Sbjct: 235 ARDVGTGEANLQTIERALESDPLPGHEGIAPAPPEPLVLTDVEYGVLEFAVDEEAAESAR 294
>gi|336326394|ref|YP_004606360.1| tRNA pseudouridine synthase A [Corynebacterium resistens DSM 45100]
gi|336102376|gb|AEI10196.1| tRNA pseudouridine synthase A [Corynebacterium resistens DSM 45100]
Length = 324
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 117/277 (42%), Gaps = 41/277 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L V Y G F+G+A+ + TV+ LE+ +L + + + GRTD GV +
Sbjct: 43 VRLDVAYDGTDFHGWAAQFGLR-TVQG----VLEE-KLSLVTRHAVQLTVAGRTDAGVHA 96
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + T + ++ D VR L+R+LP D+RV G S AP
Sbjct: 97 DGQVAHFDVPAT-------------TFTQRSLQRPGDLVRRLSRMLPADVRVHGASEAPV 143
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y WR ++L +++A + VG +DF F
Sbjct: 144 GFDARFSALRRHYVYRVTTATAGPRPVRVRDTARWRRPIDLDKVKAASEVLVGLNDFAAF 203
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
CK A R + F+ E A ++ AF W VR +V + +G+G
Sbjct: 204 CK--AREGATTIRELQQFQWFDVSTPAEPETYEA-RVAADAFCWSMVRSLVGAVLTVGEG 260
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
D LL N R + +AP L L D+
Sbjct: 261 KRDGDFTAELLKQN--ERSSKVPVAPAEGLNLVQVDY 295
>gi|283795894|ref|ZP_06345047.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
gi|291076529|gb|EFE13893.1| tRNA pseudouridine synthase A [Clostridium sp. M62/1]
Length = 275
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 124/293 (42%), Gaps = 58/293 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + + + Y G R+ G+ GN + T++ ++ LEK L + E H S GRTD GV
Sbjct: 3 RNIKIVLQYDGSRYDGWQKQGNTKNTIQGKLEAVLEK---LAGEPVEIHGS--GRTDAGV 57
Query: 152 SSVGQVIAIYLRSNI-----------KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLP 200
++GQV L KE +S+ V +DY LNR LP
Sbjct: 58 HALGQVANFRLEERCLEELVDKTPEKKENGGKASSVSAAV--------MDY---LNRYLP 106
Query: 201 KDIRVIGWSPAPTDFSARFSCISREYKY---------FFWR-------ENLNLSAMESAG 244
+DI VI P F +R + + + Y Y F R E L+L AM+ A
Sbjct: 107 EDIAVISAMEVPERFHSRLNAVEKTYLYQIETAGRKNVFERKYIYGLGEELDLLAMKEAA 166
Query: 245 KKFVGEHDFRNFC---KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWH 301
K +G HDFR F +M + V ++ + S + F GN FL++
Sbjct: 167 KLLLGSHDFRAFSSAKRMKKSTVRELRKIEIHRDGSRVLLEFTGN----------GFLYN 216
Query: 302 QVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
VR + L IG ++D + L++ R+ AP L+L+S +D
Sbjct: 217 MVRILTGTLIEIGLHRRTVDSVRKALESQ--DRENAGFTAPAEGLLLKSVRYD 267
>gi|317488484|ref|ZP_07947035.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA]
gi|316912416|gb|EFV33974.1| tRNA pseudouridine synthase A [Eggerthella sp. 1_3_56FAA]
Length = 280
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 40/251 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL + Y G F GFA + TV+ ++ AL R+L +++ + GRTD GV +
Sbjct: 31 LALTLSYNGAPFSGFARQPG-QTTVQGDLEDAL---RMLF--RRDVETTCAGRTDAGVHA 84
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQV++ ++ + + S+ R LN + I V P
Sbjct: 85 LGQVVSF----DVDDRDIAGRSLPS------------LRRSLNALTHDAITVREVEPKKL 128
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
FSARF +REY Y +F L+++AME+ + +GEHDF++FC
Sbjct: 129 GFSARFDAQAREYHYHLCVDSTCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFC 188
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+A R+V P + G L +IK+ G+AFL VR +V L M+G+G
Sbjct: 189 MAASAEGKPTHRNVREISFHPETVM--GENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQ 246
Query: 318 ESIDVIESLLD 328
D + +L+
Sbjct: 247 RDADWVGEVLE 257
>gi|325832022|ref|ZP_08165119.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1]
gi|325486343|gb|EGC88795.1| tRNA pseudouridine synthase A [Eggerthella sp. HGA1]
Length = 284
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 40/251 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL + Y G F GFA + TV+ ++ AL R+L +++ + GRTD GV +
Sbjct: 35 LALTLSYNGAPFSGFARQPG-QTTVQGDLEDAL---RMLF--RRDVETTCAGRTDAGVHA 88
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQV++ ++ + + S+ R LN + I V P
Sbjct: 89 LGQVVSF----DVDDRDIAGRSLPS------------LRRSLNALTHDAITVREVEPKKL 132
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
FSARF +REY Y +F L+++AME+ + +GEHDF++FC
Sbjct: 133 GFSARFDAQAREYHYHLCVDSTCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFC 192
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+A R+V P + G L +IK+ G+AFL VR +V L M+G+G
Sbjct: 193 MAASAEGKPTHRNVREISFHPETVM--GENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQ 250
Query: 318 ESIDVIESLLD 328
D + +L+
Sbjct: 251 RDADWVGEVLE 261
>gi|452820462|gb|EME27504.1| tRNA pseudouridine synthase A [Galdieria sulphuraria]
Length = 943
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 139/349 (39%), Gaps = 65/349 (18%)
Query: 44 KIEDKVHDGVEDGTTLVEENRKT--------ESGGCKTG---KKKVKEKMSGTLNHHFKR 92
K+ K G+E+ + + +K ES KT K V + H F
Sbjct: 30 KVPFKKSKGIENESLVTTTTKKDNLLLASAEESVSVKTSVCNSKTVAHNSNSKKRHKF-- 87
Query: 93 YVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRL----LVADKKESHYSRCGRTD 148
A+ + Y G + G + ++E E+ KAL T L L + ++ +SR RTD
Sbjct: 88 --AIVIGYLGAAYQGMQRNPGA-VSIEGELEKALVATGLIPNNLEGNLRKIEWSRAARTD 144
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
KGVS+ GQV++ YL + ++ E E D ++ +N LP DIR++G
Sbjct: 145 KGVSAAGQVVSTYL-----------------LVDKDFEREQDILKRVNDTLPTDIRILGV 187
Query: 209 SPAPTDFSARFSCISREYKYFFWRENLNLSAMESAG----------------------KK 246
F A+ +C R Y Y F L S E K
Sbjct: 188 YSVSGGFHAKNACDRRRYSYMFPSWTLCRSKQEHEKMLKDSDYKNIMKAKVDDLNDLLKY 247
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEIS-PCYISFEGNQLCAIKIRGSAFLWHQVRC 305
F+G H F NF ++ +R++ F S P +I G + + G +FL HQ+R
Sbjct: 248 FIGTHHFHNFTVGQTSSNGTCQRYILEFFCSLPFFIG--GESFLNVTVVGQSFLLHQIRK 305
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
M+ + + +G + L + P MAP + L L C F+
Sbjct: 306 MIGLAIAVSKGWIPKEAFNVSLSKHHRLETP---MAPSLGLFLDECLFE 351
>gi|407278710|ref|ZP_11107180.1| tRNA pseudouridine synthase TruA [Rhodococcus sp. P14]
Length = 304
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 108/251 (43%), Gaps = 50/251 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A TV EI + +L + + GRTD GV + G
Sbjct: 38 LDIAYDGTDFSGWARQPGRR-TVCGEI-----EEKLGAVVRTPVQLTVAGRTDAGVHASG 91
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + A++ +D VR L R LP+D+RV G S AP F
Sbjct: 92 QVAHV---------DVPTATL--------PDDLARLVRRLARFLPRDVRVTGISVAPPHF 134
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y W + +++ AM +A + +G HDF FCK
Sbjct: 135 DARFSAVRRHYEYRLTTAVYGAEPLRARDTVAWPKPVDVDAMRAASRSLLGLHDFAAFCK 194
Query: 259 -MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
D A R + F+ + G+ L A + AF W VR +V + +G+G
Sbjct: 195 RRDGATT---VRELQRFD-----WTRTGDILTA-HVSADAFCWSMVRSLVGAVLAVGEGR 245
Query: 318 ESIDVIESLLD 328
S++ +LLD
Sbjct: 246 RSVEWTTALLD 256
>gi|282163988|ref|YP_003356373.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE]
gi|282156302|dbj|BAI61390.1| tRNA pseudouridine synthase A [Methanocella paludicola SANAE]
Length = 279
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 119/269 (44%), Gaps = 44/269 (16%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VA K+ Y G F G S TVE E+ K L + + ++ +K + +S GRTD GV +
Sbjct: 15 VAFKLAYVGTDFSGSQSQPGRR-TVEGELRKGLVE-KGIIGEKTKVEFS--GRTDAGVHA 70
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQVIA ++ D++ R++N VLP D+ V + P
Sbjct: 71 LGQVIAFVPKN----------------------DKLTEPRIINSVLPADMWVYAKAVVPD 108
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF R +SR Y+Y + ++ + + + F G HDF NF ++ N R V S
Sbjct: 109 DFDPRRHAVSRTYRYLLYAPDVIERRIVTYSQLFPGTHDFTNFSSVEPNK--NPVRTVKS 166
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN--- 330
++ + + I I +FLW+ VR +V L ++G IE +L +
Sbjct: 167 ISVT------KRGDMYVIDIEADSFLWNMVRKIVTGLRLVGSNKRPAQWIEQMLKPDEYR 220
Query: 331 -GIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
GIP A L L ++ G++F
Sbjct: 221 EGIP------PALAAGLYLMKVEYPGVEF 243
>gi|448341948|ref|ZP_21530902.1| tRNA pseudouridine synthase A [Natrinema gari JCM 14663]
gi|445626658|gb|ELY80000.1| tRNA pseudouridine synthase A [Natrinema gari JCM 14663]
Length = 287
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 118/283 (41%), Gaps = 33/283 (11%)
Query: 95 ALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVS 152
A ++ Y G +YGF + PTVE +F AL +L + K + Y+ GRTD GVS
Sbjct: 5 AFRIAYDGTDYYGFQRQPQPDIPTVEDAVFDALRALSVLDPEADKPAGYAAAGRTDAGVS 64
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
++ Q IA+ ++ D + R LN LP D+R + AP
Sbjct: 65 ALAQTIAL-----------------------EVPDWL-TPRALNAELPADVRAWAAADAP 100
Query: 213 TDFSARFSCISREYKYFFWRENLNLSAMESA---GKKFVGEHDFRNFCKMDAA--NVHNY 267
F A R Y Y + + + +SA V + FR C + ++HN
Sbjct: 101 DGFHATHHASRRAYTYHLYAPPADAAVPDSAVDVTAPAVDDERFRAACDALSGTHDIHNL 160
Query: 268 KRHVTSFEIS-PCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
+ E S + +G+ L I + F VR +V+++ +G G + I+ +
Sbjct: 161 TPDDRNTERSLTIAVERDGDYLV-ITVSAGGFARELVRRLVSLVRAVGAGDSPLAKIDRV 219
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
L++ +P AP PLVL + D+ L F DA R
Sbjct: 220 LESEPLPGHEGIAPAPPEPLVLTAVDYPNLAFEIDADAAESAR 262
>gi|357589443|ref|ZP_09128109.1| tRNA pseudouridine synthase A [Corynebacterium nuruki S6-4]
Length = 288
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 112/277 (40%), Gaps = 37/277 (13%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G F+G+A P + + + +L + + GRTD GV +
Sbjct: 11 VRLDIAYDGTDFHGWARQKG--PQSGLRTVQGVLEEKLSLVFRTPVELVVAGRTDAGVHA 68
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + + E + +++ D VR L+R+LP D+R+ G S A
Sbjct: 69 DGQVAHVDVPA-------------EAFGQRSLQEPSDLVRRLSRMLPDDVRLHGASAAAP 115
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y WR ++L+ ++SA VG HDF F
Sbjct: 116 GFDARFSALRRHYVYRVTTALAGPLPLRVRDTARWRHPVDLATVQSASDVLVGLHDFAAF 175
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
CK + R + F E A + AF W VR +V + +G+G
Sbjct: 176 CKYREGS--TTVRDLQEFTWRDVSTPAEPETYEATVV-ADAFCWSMVRSLVGAVLTVGEG 232
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
E LLD R + +AP L L + D+
Sbjct: 233 RRPAGFTEGLLDERS--RSSKVPVAPACGLNLVAVDY 267
>gi|340356749|ref|ZP_08679390.1| tRNA pseudouridine synthase A [Sporosarcina newyorkensis 2681]
gi|339620087|gb|EGQ24658.1| tRNA pseudouridine synthase A [Sporosarcina newyorkensis 2681]
Length = 245
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 111/274 (40%), Gaps = 54/274 (19%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYS-RCGRTDKGVSSVGQ 156
+ Y G F G+ S NM TV+SEI KAL K K S YS GRTD GV ++GQ
Sbjct: 8 IAYDGTNFAGYQSQPNMR-TVQSEIDKALVKLH-----KDSSVYSVASGRTDAGVHALGQ 61
Query: 157 VIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFS 216
VI + ++ + LN +LPKD+RVIG A DF
Sbjct: 62 VIHF---------------------DTPLDLADRWKMALNVLLPKDVRVIGVEEAAVDFH 100
Query: 217 ARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
AR+ + Y Y R N ++ M + +G HDF +FC
Sbjct: 101 ARYGATGKTYVYRWSYSEVQSPFERNFAVHLGRWNPDVERMREGAQHLIGTHDFTSFCSA 160
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
A + + I + +G+ L +++ G FL++ VR + VL +G G +
Sbjct: 161 KTATTNKVR------TIRKLSLERQGDHLV-LEVEGDGFLYNMVRTIAGVLLAVGIGWDE 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ + + D RK AP L L +
Sbjct: 214 PEDVRKIRDAK--DRKMAGKTAPAHGLYLMEVTY 245
>gi|376247821|ref|YP_005139765.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC04]
gi|376250643|ref|YP_005137524.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC03]
gi|372112147|gb|AEX78206.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC03]
gi|372114389|gb|AEX80447.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC04]
Length = 295
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 110/252 (43%), Gaps = 38/252 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + S + K +E T LV ++ + GRTD GV +
Sbjct: 15 IRLDLAYDGTDFHGWARQGDSD---LSTVQKIIEDTLTLVL-QRPIDLTVAGRTDAGVHA 70
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV ++ S+ D +R L R++P D+R+ S P
Sbjct: 71 TGQVAHF----DVDPAALETRSIAG--------DPARLIRRLARLMPDDVRIHNMSFVPA 118
Query: 214 DFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS + R Y Y W ++++SAM++A +G HDF F
Sbjct: 119 EFDARFSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAF 178
Query: 257 CKM-DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK + A+ + T ++S + + QL + AF W VR +V ++G+
Sbjct: 179 CKYREGASTIRDLQEFTWHDVS----TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGE 234
Query: 316 GLESIDVIESLL 327
G + E LL
Sbjct: 235 GKRADGFTEHLL 246
>gi|193706844|ref|XP_001945291.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Acyrthosiphon pisum]
Length = 441
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 56/287 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK-----KESHYSRCG 145
++ A+ + Y G + G + ++ TVE E+ AL K++ L+ D+ + + R
Sbjct: 65 RKKCAILLAYSGLGYLGLQRNKGVK-TVEEELLLAL-KSKNLITDEGFEQIQTMQFQRAA 122
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTDKGVS++ Q+I++ L ++ + +V+N LP+ IRV
Sbjct: 123 RTDKGVSALRQIISLLLPEDVDK------------------------QVINTALPEQIRV 158
Query: 206 IGWSPAPTDFSARFSCISREYKY---------------FFWRENLN-LSAMESAGKKFVG 249
+ F+++ SC R Y Y F +R + + + K F+G
Sbjct: 159 LDIRRVTKGFNSKNSCDGRTYSYTCPTFAFAPAETTIDFSYRIDATVIDRINEVVKSFLG 218
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFE--GNQLCAIKIRGSAFLWHQVRCMV 307
H++ N+ + +R++ SF C FE G +L ++ +RG +F+ HQ+R MV
Sbjct: 219 CHNYHNYTSKKKPGDPSAQRYMVSFY---CDKPFEKDGVELISLYVRGQSFMLHQIRKMV 275
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
V+ I +G+ DVIE P + +AP + LVL+ +D
Sbjct: 276 GVIIAICRGVAKHDVIERAWQ----PDRLDLPIAPGLGLVLEEVHYD 318
>gi|357479187|ref|XP_003609879.1| tRNA pseudouridine synthase family protein [Medicago truncatula]
gi|355510934|gb|AES92076.1| tRNA pseudouridine synthase family protein [Medicago truncatula]
Length = 322
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 45/249 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ + PTV+ + KAL + L +K+ RTD GV + G
Sbjct: 46 LLLSYDGTRYAGWQYQES-PPTVQCAVEKALIRATKL--QRKDLQLVGASRTDAGVHAWG 102
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N ++ +A+ LN +LP DIRV SPA +F
Sbjct: 103 QVAHFLTPFNYDNLDSVHAA-------------------LNGLLPSDIRVREISPASAEF 143
Query: 216 SARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKM 259
ARFS S+ Y Y + + LN +AM A + F+G+HDF F
Sbjct: 144 HARFSVKSKIYHYKIYSDTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENA 203
Query: 260 DAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + + +H+ F++ E L +++ GS FL+ QVR MVA+L IG+
Sbjct: 204 SHNDRIPDPVKHIFRFDVK------EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAT 257
Query: 319 SIDVIESLL 327
D++ +L
Sbjct: 258 PPDIVPHIL 266
>gi|257790805|ref|YP_003181411.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243]
gi|257474702|gb|ACV55022.1| tRNA pseudouridine synthase A [Eggerthella lenta DSM 2243]
Length = 255
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 115/251 (45%), Gaps = 40/251 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL + Y G F GFA + TV+ ++ AL R+L +++ + GRTD GV +
Sbjct: 6 LALTLSYNGAPFSGFARQPG-QTTVQGDLEDAL---RMLF--RRDVETTCAGRTDAGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQV++ ++ + + S+ R LN + I V P
Sbjct: 60 LGQVVSF----DVDDRDIAGRSLPS------------LRRSLNALTHDAITVREVEPKKL 103
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
FSARF +REY Y +F L+++AME+ + +GEHDF++FC
Sbjct: 104 GFSARFDAQAREYHYHLCVDSTCPIFMKDFSWFVPGGLDITAMEAGAQYLLGEHDFKSFC 163
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+A R+V P + G L +IK+ G+AFL VR +V L M+G+G
Sbjct: 164 MAASAEGKPTHRNVREISFHPETVM--GENLMSIKVVGNAFLHSMVRTIVGTLVMVGKGQ 221
Query: 318 ESIDVIESLLD 328
D + +L+
Sbjct: 222 RDADWVGEVLE 232
>gi|448319614|ref|ZP_21509110.1| tRNA pseudouridine synthase A [Natronococcus amylolyticus DSM
10524]
gi|445607607|gb|ELY61487.1| tRNA pseudouridine synthase A [Natronococcus amylolyticus DSM
10524]
Length = 285
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 110/283 (38%), Gaps = 35/283 (12%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVSS 153
A ++ Y G +YGF ++ PTVE +F AL +L +D +K + Y+ GRTD GVS+
Sbjct: 5 AFRIAYDGSDYYGFQRQPDV-PTVEDALFDALRAHGVLESDARKPAGYAAAGRTDAGVSA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA-P 212
+ Q + + S + R N LP D+R W+ A P
Sbjct: 64 LAQTVGLEAPSWLTP------------------------RAFNGELPADVRA--WAAADP 97
Query: 213 TD-FSARFSCISREYKYFFWRENLNLSAMESA---GKKFVGEHDFRNFCKMDAA--NVHN 266
D F A REY Y + N G+ V + FR C + + HN
Sbjct: 98 ADGFHATHHATRREYTYHLYAPPANRGEENEPARDGRAAVDDDRFRAACDALSGTHDFHN 157
Query: 267 YKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
+ E SP + + + F VR +V++ +G G S +E
Sbjct: 158 LTPDDRNTERSPTLEAMRDGDYLVVTVSAGGFARELVRRLVSLAESVGTGERSFADLERA 217
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
L+ +P AP PLVL D+ L F DA R
Sbjct: 218 LEPESLPGHEGIAPAPPEPLVLADVDYPDLAFEVDEDAAASAR 260
>gi|218282056|ref|ZP_03488361.1| hypothetical protein EUBIFOR_00932 [Eubacterium biforme DSM 3989]
gi|218216974|gb|EEC90512.1| hypothetical protein EUBIFOR_00932 [Eubacterium biforme DSM 3989]
Length = 247
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 108/250 (43%), Gaps = 53/250 (21%)
Query: 98 VMYFGQRFYGFASDGN---MEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
V Y G + G+ N ++ +E ++K ++ +VA GRTD GV +
Sbjct: 7 VSYDGFNYAGWQKQENALGIQQVIEEALYKITKENVDVVA---------SGRTDAGVHAF 57
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQV NI I Y R LN +LPKDIR++ P D
Sbjct: 58 GQVFHFETNKNIPA--------------------IQYERALNALLPKDIRILKTEEMPDD 97
Query: 215 FSARFSCISREYKYF---------------FWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
F ARFS + + Y Y+ + L++ AM++A K F+G HDF +F
Sbjct: 98 FHARFSAVGKRYDYYCSYDIKNPFNYKYRNLLTKKLDIEAMKNASKVFLGSHDFTSFA-- 155
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
++ + K V + IS I EG + I G+ FL +QVR M L +GQ
Sbjct: 156 -SSKIDPRKPRVKT--ISNIEIIEEGMDVHFI-FEGTGFLRYQVRMMTGTLIAVGQHKIG 211
Query: 320 IDVIESLLDT 329
+D ++ +LD
Sbjct: 212 VDDVQRMLDA 221
>gi|339445580|ref|YP_004711584.1| pseudouridylate synthase [Eggerthella sp. YY7918]
gi|338905332|dbj|BAK45183.1| pseudouridylate synthase [Eggerthella sp. YY7918]
Length = 279
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 116/251 (46%), Gaps = 40/251 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G F GFA + TV+ ++ +AL+ LL +++ + GRTD GV +
Sbjct: 30 LALTVSYNGAPFSGFARQPG-QLTVQGDLEEALQ---LLF--RRDIETTCAGRTDAGVHA 83
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQV++ ++ + + S+ R LN + I V P
Sbjct: 84 LGQVVSF----DVTDADLAGRSLPS------------LRRSLNALTHDAITVREVEPKRL 127
Query: 214 DFSARFSCISREYKYF---------FWRE-------NLNLSAMESAGKKFVGEHDFRNFC 257
FSARF +REY Y+ F R+ L+L+AME + +GEHDF++FC
Sbjct: 128 GFSARFDAQAREYHYYLCVDSTNPIFMRDFSWFVPGGLDLTAMEKGAQYLLGEHDFKSFC 187
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+A R++ P I G + AIK+ G+AFL VR +V L M+G+G
Sbjct: 188 LAASAVDKPTHRNIREISFHPETIM--GENILAIKVVGNAFLHSMVRTIVGTLVMVGRGQ 245
Query: 318 ESIDVIESLLD 328
+ +L+
Sbjct: 246 RPATWVAEVLE 256
>gi|429732176|ref|ZP_19266796.1| tRNA pseudouridine synthase A [Corynebacterium durum F0235]
gi|429144411|gb|EKX87530.1| tRNA pseudouridine synthase A [Corynebacterium durum F0235]
Length = 278
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 104/249 (41%), Gaps = 38/249 (15%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L V Y G F+G+AS + TV+ + AL + + + GRTD GV + G
Sbjct: 6 LDVAYDGTDFHGWASQDGLR-TVQGVLEDALSMIL-----RVPTPLTVAGRTDAGVHASG 59
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + ++ + + S+G D VR L R+LP+DIRV + AP F
Sbjct: 60 QVAHV----DVPIASLDTRSIGG--------DPTRMVRRLARLLPEDIRVQDCTFAPAGF 107
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y Y W + ++++AM+ + VG HDF FCK
Sbjct: 108 DARFSALRRHYTYRITTHPGGALPTRTRDTATWPKPVDMAAMQESANYLVGLHDFAAFCK 167
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
A R + SF E QL + AF W VR +V +G+G
Sbjct: 168 --ARPNSTTVRDLQSFTWHDVSTGAE-PQLYEAHVTADAFCWSMVRSLVGACLAVGEGRR 224
Query: 319 SIDVIESLL 327
E LL
Sbjct: 225 QATFAELLL 233
>gi|408529900|emb|CCK28074.1| tRNA pseudouridine synthase A [Streptomyces davawensis JCM 4913]
Length = 281
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 112/258 (43%), Gaps = 51/258 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY--SRCGRTDKGV 151
V L + Y G F+G+A + TV+ EI AL V E+ Y + GRTD GV
Sbjct: 12 VRLDLSYDGGEFHGWAKQAGGQRTVQGEIEDALRT----VTRSGETTYELTVAGRTDAGV 67
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV + L + + QE+ ++ R+ R LPKD+RV + A
Sbjct: 68 HARGQVAHVDLPEELWGLH----------QEKLLK------RLAGR-LPKDVRVWALTEA 110
Query: 212 PTDFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFR 254
P F+ARF+ + R Y Y W + L++ M++A K VGEHDF
Sbjct: 111 PEGFNARFAALWRRYIYRVGDRPGGVDPLLRSHVLWHDWELDVDVMDAAAKSLVGEHDFA 170
Query: 255 NFCKMDAANVHNYKRHVTSF--EISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
+ K KR S EI + + + I++R AF +QVR MV L
Sbjct: 171 AYAK---------KREGASTVREIFDFGVRRTADGVVEIEVRADAFCHNQVRSMVGALLF 221
Query: 313 IGQGLESIDVIESLLDTN 330
+G G ++ +LD
Sbjct: 222 VGDGHRGVEWPRKVLDAR 239
>gi|145545961|ref|XP_001458664.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426485|emb|CAK91267.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/319 (25%), Positives = 146/319 (45%), Gaps = 34/319 (10%)
Query: 88 HHFKRYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVA----DKKESHYS 142
++FK+ V L Y G ++G +E TVES++F+AL+ + L++ D +S +S
Sbjct: 4 NYFKQKVLLTFGYNGANYHGLQIQKGVEFETVESKLFQALKDSNLIMEQNANDLSKSGWS 63
Query: 143 RCGRTDKGVSSVGQVIAIYLRSNIK----ECNTNNASMGETVQEEQIEDEIDYVRVLNRV 198
R RTDKGV ++ IA+ L N + E N + ++++Q ++DY +VLN +
Sbjct: 64 RGARTDKGVHALCNSIAVKLCINKEFFKDEIQQNEEEIVSKLRDKQ---KVDYSKVLNVI 120
Query: 199 ---LPKDIRVIGWSPAPTDFSARFSCISREYKYF----FWRENLNLSAMESAG---KKFV 248
LP DI+V F R + R Y+Y + + +E KKFV
Sbjct: 121 NSNLPNDIKVHSIKLVTQGFDVRKNARYRFYEYIAPVSIYSDKKGEEILEKVSNLVKKFV 180
Query: 249 GEHDFRNFCKMDAANVHNYKRHVTSF--EISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
G H+F N+ + R++ S E+ C + + I G +F++HQ+R M
Sbjct: 181 GTHNFHNYSRGMKYTDPQSMRYILSIQVELFKC----QDREFFKFLIHGQSFIYHQIRKM 236
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGH 366
+ ++ I Q ++ ++ +D + + +AP L L F+G + D
Sbjct: 237 MGIVIQIFQE----ELPDTFIDNTFFKNQLRIILAPAEGLFLNRISFEG--YNTKFDIPQ 290
Query: 367 DLRLHLRNECQVYQLQAAI 385
L + ++ ++ Q + I
Sbjct: 291 RLEIEEEDQIKIDQFRPTI 309
>gi|397774563|ref|YP_006542109.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Natrinema sp. J7-2]
gi|397683656|gb|AFO58033.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Natrinema sp. J7-2]
Length = 287
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 118/283 (41%), Gaps = 33/283 (11%)
Query: 95 ALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVS 152
A ++ Y G +YGF + PTVE +F AL +L + K + Y+ GRTD GVS
Sbjct: 5 AFRIAYDGTDYYGFQRQPQPDIPTVEDAVFDALRALSVLDPEADKPAGYAAAGRTDAGVS 64
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
++ Q IA+ ++ D + R LN LP D+R + AP
Sbjct: 65 ALAQTIAL-----------------------EVPDWL-TPRALNAELPADVRAWAAADAP 100
Query: 213 TDFSARFSCISREYKYFFWRENLNLSAMESA---GKKFVGEHDFRNFCKMDAA--NVHNY 267
F A R Y Y + + + +SA V + FR C + ++HN
Sbjct: 101 DGFHATHHASRRAYTYHLYAPPADAAMPDSAVDVTAPTVDDERFRAACDALSGTHDIHNL 160
Query: 268 KRHVTSFEIS-PCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
+ E S + +G+ L I + F VR +V+++ +G G + I+ +
Sbjct: 161 TPDDRNTERSLTIAVERDGDYLV-ITVSAGGFARELVRRLVSLVRAVGAGDSPLAKIDRV 219
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
L++ +P AP PLVL + D+ L F DA R
Sbjct: 220 LESEPLPGHEGIAPAPPEPLVLTAVDYPDLAFEIDADAAESAR 262
>gi|376284049|ref|YP_005157259.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae 31A]
gi|371577564|gb|AEX41232.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae 31A]
Length = 288
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 38/252 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + + K +E T LV ++ + GRTD GV +
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD---LRTVQKIIEDTLTLVL-QRPIDLTVAGRTDAGVHA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV ++ S+ D +R L R++P D+R+ S P
Sbjct: 64 TGQVAHF----DVDPAALETRSIAG--------DPARLIRRLARLMPDDVRIHNMSFVPA 111
Query: 214 DFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS + R Y Y W ++++SAM++A +G HDF F
Sbjct: 112 EFDARFSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAF 171
Query: 257 CKM-DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK + A+ + T ++S + + QL + AF W VR +V ++G+
Sbjct: 172 CKYREGASTIRDLQEFTWHDVS----TLQEPQLYEAHVTADAFCWSMVRSLVGACLVVGE 227
Query: 316 GLESIDVIESLL 327
G + E LL
Sbjct: 228 GKRADGFTEHLL 239
>gi|313223491|emb|CBY41917.1| unnamed protein product [Oikopleura dioica]
Length = 281
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 44/252 (17%)
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTN-NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
+KGV +V VI++++ S + E N N ++GE ++V ++NR LP DI +
Sbjct: 27 EKGVHAVNNVISLFVNSRLSEDEINENVTVGER----------NFVAIINRQLPDDIWIT 76
Query: 207 GWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHN 266
L++ M+ A +GEHDFRNF + N
Sbjct: 77 S--------------------------GLDVELMKEAASYLIGEHDFRNFSQAQLER-QN 109
Query: 267 YKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326
R + +I + +C I+ S FL+HQ+R +A+L ++G LE +++ L
Sbjct: 110 TVRVCFAADIKQVP---NMSSMCVFSIKASGFLYHQIRLTMAILALVGNKLEKSTIVKEL 166
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAI- 385
LD PR+P Y A LVL C+++ +++ D L + N ++Y ++ +
Sbjct: 167 LDVEKYPRRPSYKYANPDGLVLIDCEYENVEWIDGEDQSRFLASKIEN--KMYNMKIGLS 224
Query: 386 FHEALLNCLPLA 397
HE + L +
Sbjct: 225 VHELIKKTLDIG 236
>gi|389852268|ref|YP_006354502.1| tRNA pseudouridine synthase A [Pyrococcus sp. ST04]
gi|388249574|gb|AFK22427.1| tRNA pseudouridine synthase A [Pyrococcus sp. ST04]
Length = 266
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/265 (28%), Positives = 123/265 (46%), Gaps = 39/265 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VALK+ Y G RF+GF ++ TVE EI +AL + +D K + RTD+GVS+
Sbjct: 3 VALKIAYDGTRFHGFQRQPDVR-TVEGEIIRALNDAGIEFSDFKGA-----SRTDRGVSA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
G VIAI T +E+I + + VLN + +D+ + G +
Sbjct: 57 RGNVIAI------------------TTDDERILNPM----VLNSRM-EDVWIWGVAVVSD 93
Query: 214 DFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS 273
DF RF S+ Y+Y+ N+ +E + F+G HDF F ++D + T
Sbjct: 94 DFHPRFRATSKVYRYYLPCIGCNVEKIERCAEVFIGTHDFSAFSRVDGRD--------TI 145
Query: 274 FEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIP 333
I + G ++ I++ G +FLW VR +V+ + + G+ + I+ +L
Sbjct: 146 RSIENVRVERRG-RIVVIEVEGRSFLWEMVRRIVSAIKLCSLGMLDREEIKEML-AGKFR 203
Query: 334 RKPQYNMAPEIPLVLQSCDFDGLKF 358
R + AP L+L ++ +KF
Sbjct: 204 RHRKVPPAPPEGLILWDIKYESVKF 228
>gi|160934132|ref|ZP_02081519.1| hypothetical protein CLOLEP_02995 [Clostridium leptum DSM 753]
gi|156866805|gb|EDO60177.1| tRNA pseudouridine synthase A [Clostridium leptum DSM 753]
Length = 251
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 109/255 (42%), Gaps = 48/255 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
KR + L + Y G+ ++G+ N E+F+ R ++ D + C RTD G
Sbjct: 3 KRNLLLTIAYDGRAYHGWQIQENALSV--QEVFQG--ALRQVIGD--DFDVKGCSRTDSG 56
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + I++ G + E++ V LNR LP D+ V G
Sbjct: 57 VHANQYCISL--------------KTGHRIPCERL------VAALNRFLPMDMAVKGCRS 96
Query: 211 APTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFR 254
DF AR+SC +EY+Y W + L+ + A + FVG+HDF
Sbjct: 97 VSLDFHARYSCKGKEYQYLIWNDPVRNPFLDGRAFHYWYPLDTDMLNQAAQAFVGKHDFT 156
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+FC +D N +R V C +S EG+ L ++ FL++ VR MV L I
Sbjct: 157 SFCTLDHRERDNMERMVKC-----CSVSREGS-LVTFRVEADGFLYNMVRIMVGTLLRIA 210
Query: 315 QGLESIDVIESLLDT 329
QG D I ++L+
Sbjct: 211 QGKIPEDGIPAILEA 225
>gi|448336302|ref|ZP_21525405.1| tRNA pseudouridine synthase A [Natrinema pallidum DSM 3751]
gi|445629415|gb|ELY82700.1| tRNA pseudouridine synthase A [Natrinema pallidum DSM 3751]
Length = 285
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 114/280 (40%), Gaps = 29/280 (10%)
Query: 95 ALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVS 152
A ++ Y G ++GF + PTVE+ +F AL +L D K + Y+ GRTD GVS
Sbjct: 5 AFRIAYDGTDYHGFQRQPQPDIPTVENAVFDALRALAVLDPDADKPAGYAAAGRTDAGVS 64
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
++ Q IA+ ++ D + R LN LP D+R + P
Sbjct: 65 ALAQTIAL-----------------------EVPDWL-TPRALNAELPADVRAWAAADTP 100
Query: 213 TDFSARFSCISREYKYFFWRENLNLSAMES-AGKKFVGEHDFRNFCKMDAA--NVHNYKR 269
+F A R Y Y + + + +S A V + FR C + ++HN
Sbjct: 101 DEFHATHHASRRAYTYHLYAPPADAAPSDSDATATAVDDERFRAACDALSGTHDIHNLTP 160
Query: 270 HVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
+ E S + I + F VR +V+++ +G G + ++ +L+
Sbjct: 161 DDRNTERSLTIAAERDGDYLVITVSAGGFARELVRRLVSLVRAVGAGDSPLAKLDRVLEP 220
Query: 330 NGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
+P AP PLVL + D+ L F DA R
Sbjct: 221 EPLPGHEGIAPAPPEPLVLTAVDYPDLAFEIDADAAESAR 260
>gi|357479185|ref|XP_003609878.1| tRNA pseudouridine synthase family protein [Medicago truncatula]
gi|355510933|gb|AES92075.1| tRNA pseudouridine synthase family protein [Medicago truncatula]
Length = 350
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 111/249 (44%), Gaps = 45/249 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ + PTV+ + KAL + L +K+ RTD GV + G
Sbjct: 74 LLLSYDGTRYAGWQYQES-PPTVQCAVEKALIRATKL--QRKDLQLVGASRTDAGVHAWG 130
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N ++ +A+ LN +LP DIRV SPA +F
Sbjct: 131 QVAHFLTPFNYDNLDSVHAA-------------------LNGLLPSDIRVREISPASAEF 171
Query: 216 SARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKM 259
ARFS S+ Y Y + + LN +AM A + F+G+HDF F
Sbjct: 172 HARFSVKSKIYHYKIYSDTIMDPFQRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENA 231
Query: 260 DAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + + +H+ F++ E L +++ GS FL+ QVR MVA+L IG+
Sbjct: 232 SHNDRIPDPVKHIFRFDVK------EMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEAT 285
Query: 319 SIDVIESLL 327
D++ +L
Sbjct: 286 PPDIVPHIL 294
>gi|333980376|ref|YP_004518321.1| tRNA pseudouridine synthase A [Desulfotomaculum kuznetsovii DSM
6115]
gi|333823857|gb|AEG16520.1| tRNA pseudouridine synthase A [Desulfotomaculum kuznetsovii DSM
6115]
Length = 248
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 111/253 (43%), Gaps = 47/253 (18%)
Query: 92 RYVALKVMYFGQRFYGFASD-GNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
R + L + Y G ++GF G T++ + K L R LV +E GRTD G
Sbjct: 2 RNIKLTIAYDGTNYHGFQEQRGTGLVTIQGVLEKCL---RRLVG--REIRVIGAGRTDAG 56
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQV+ N C G ++ E+I V LN +LP+DI +
Sbjct: 57 VHARGQVV------NFDAC-------GWSIPTERI------VLALNGMLPRDIAALKAEE 97
Query: 211 APTDFSARFSCISREYKYF---------FWR-------ENLNLSAMESAGKKFVGEHDFR 254
+F AR+S +++ Y+Y FWR L++ AM A ++ VG HDF
Sbjct: 98 VGPEFHARYSALAKTYRYTIYNSRIPSPFWRLYSHFVPRPLDVQAMARAAQRLVGTHDFA 157
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+F + H + T F C EG +L + RG FL++ VR MV L +G
Sbjct: 158 SFQAAGSPVKHTVR---TLFSADVCR---EGKELVHLTFRGDGFLYNMVRIMVGTLIEVG 211
Query: 315 QGLESIDVIESLL 327
G D I ++L
Sbjct: 212 LGKRDPDDIPAIL 224
>gi|452954049|gb|EME59454.1| tRNA pseudouridine synthase TruA [Rhodococcus ruber BKS 20-38]
Length = 303
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 109/252 (43%), Gaps = 52/252 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A TV EI + +L + + GRTD GV + G
Sbjct: 37 LDIAYDGTDFSGWARQPGRR-TVCGEI-----EEKLGAVVRAPVQLTVAGRTDAGVHASG 90
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + A++ +D + +R L R LP+D+RV G S AP F
Sbjct: 91 QVAHV---------DVPAAAL--------PDDLVRLMRRLARFLPRDVRVTGISVAPPHF 133
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y W + +++ AM +A + +G HDF FCK
Sbjct: 134 DARFSAVRRHYEYRLTTAVYGAEPLRARDTVAWPKPVDVDAMRAASRSLLGLHDFAAFCK 193
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A V +R F+ + G+ L A + AF W VR +V +G+G
Sbjct: 194 RREGATTVRELQR----FDWTST-----GDILTA-HVSADAFCWSMVRSLVGAALAVGEG 243
Query: 317 LESIDVIESLLD 328
S++ + +LLD
Sbjct: 244 RRSVEWMTALLD 255
>gi|378823182|ref|ZP_09845861.1| tRNA pseudouridine synthase A [Sutterella parvirubra YIT 11816]
gi|378597991|gb|EHY31200.1| tRNA pseudouridine synthase A [Sutterella parvirubra YIT 11816]
Length = 266
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 51/254 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKG 150
R VAL + Y G F G+ + ++ PTV+ + +A+E R L + C GRTD G
Sbjct: 6 RTVALGIEYDGTAFNGWQTQPDV-PTVQDTLEEAIE--RFLTVPVP----TICAGRTDAG 58
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV++ Q +++ +VR +N LPK + V P
Sbjct: 59 VHATHQVVSF--------------------QTDKVRSPESWVRAINTFLPKSVAVRWMRP 98
Query: 211 APTDFSARFSCISREYKYF----------------FWRENLNLSAMESAGKKFVGEHDFR 254
P DF ARF+ SR Y+Y+ ++ L++ M + +GEHDF
Sbjct: 99 VPDDFHARFTARSRTYEYWILNDPVRSPVMHGRTGWYFRPLDVERMRAGAAHLLGEHDFT 158
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+F + + R V EI +L ++IR +AFL H VR +V L +G
Sbjct: 159 SF-RAAECQAASPVRTVEKLEI------VRMGRLVGVRIRANAFLQHMVRNIVGTLIYVG 211
Query: 315 QGLESIDVIESLLD 328
G E ++ +LD
Sbjct: 212 SGREEPGWVKEVLD 225
>gi|340372817|ref|XP_003384940.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Amphimedon queenslandica]
Length = 422
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/298 (24%), Positives = 130/298 (43%), Gaps = 54/298 (18%)
Query: 60 VEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVE 119
+E + E G + K +K +R AL + Y G+ + G + + PT+E
Sbjct: 14 TQEEEQAEGNGVEENKSLLK-----------RRKCALVIAYCGKGYMGMQMNPGV-PTIE 61
Query: 120 SEIFKALEKTRLLVADKKESH----YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNAS 175
E+ AL K + K+S + RCGRTDKGVS+ QV+++ + + + S
Sbjct: 62 GELMTALWKAGAISEAHKDSQNKLGFQRCGRTDKGVSAARQVVSLKIIYMVP-----HQS 116
Query: 176 MGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYF------ 229
M V +N LP+ IR+IG F+++ +C SR Y+Y
Sbjct: 117 M---------------VSAINEHLPEQIRIIGLKRVSKSFNSKNACTSRLYEYLLPTYVF 161
Query: 230 --FWRENLN-------LSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCY 280
F N++ ++ +++ + G H F NF + R++ SF I +
Sbjct: 162 APFKATNMDYRITATEINRIQALLNMYKGTHKFHNFTSGKKPTDPSCHRYIMSFVIGSPF 221
Query: 281 ISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT--NGIPRKP 336
+ + + ++ + G +F+ HQ+R M+ ++ + +G + D I + IPR P
Sbjct: 222 VKNDL-EFVSLNVEGQSFMIHQIRKMIGLVIAVVRGYMNDDAITQAFEPPQTDIPRAP 278
>gi|296141060|ref|YP_003648303.1| tRNA pseudouridine synthase A [Tsukamurella paurometabola DSM
20162]
gi|296029194|gb|ADG79964.1| tRNA pseudouridine synthase A [Tsukamurella paurometabola DSM
20162]
Length = 273
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 109/279 (39%), Gaps = 61/279 (21%)
Query: 96 LKVMYFGQRFYGFASDGNMEPT---VESEIFKALE-KTRLLVADKKESHYSRCGRTDKGV 151
L + Y G F G+A VE I L +L VA GRTD GV
Sbjct: 6 LDIAYDGTDFSGWARQPERRTVCGVVEEAIGTVLRTPVQLTVA----------GRTDAGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV + + E VR L R+LP+D+RV + A
Sbjct: 56 HATGQVAHVDTDLALPE---------------------GLVRRLARMLPQDVRVTAIAEA 94
Query: 212 PTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFR 254
P +F ARFS + R Y+Y WR +++ M++A +G HDF
Sbjct: 95 PAEFDARFSALRRHYEYRLTDAPYGANPLRARDTAPWRRPVDVERMQAASDALLGLHDFA 154
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
FC+ + T E+ + + +C ++ AF W VR +V + +G
Sbjct: 155 AFCR-------RREGATTVRELQRFAWRRDADGVCTAEVSADAFCWSMVRSLVGAVAAVG 207
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G S++ + LLD R N+A L L D+
Sbjct: 208 EGRRSVEWVAGLLDER--ERSSAINVAAACGLTLVRVDY 244
>gi|46446316|ref|YP_007681.1| tRNA-pseudouridine synthase I [Candidatus Protochlamydia
amoebophila UWE25]
gi|51316630|sp|Q6MDE3.1|TRUA2_PARUW RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|46399957|emb|CAF23406.1| putative tRNA-pseudouridine synthase I [Candidatus Protochlamydia
amoebophila UWE25]
Length = 262
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 121/277 (43%), Gaps = 55/277 (19%)
Query: 94 VALKVMYFGQRFYGF---ASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+ LK+ Y GQ ++G+ + ++E T+++ + + L+ T L A RTDKG
Sbjct: 18 IKLKIAYDGQAYFGWQKTPAGPSVEKTLQNSLEQILQHTISLQA---------ASRTDKG 68
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQ++ + + I D ++ LN +LP D+R++
Sbjct: 69 VHARGQIVNF-------------------LTTKSITDLQKFILSLNSLLPTDLRILSAEK 109
Query: 211 APTDFSARFSCISREYKYFF--------------WR--ENLNLSAMESAGKKFVGEHDFR 254
P+ F +C+++EY Y+ W L L M A +GEHDF
Sbjct: 110 MPSTFHPTLNCVAKEYCYYICYDFVQLPEYRPYSWHCPFPLMLGKMTQAISVLIGEHDFS 169
Query: 255 NFCKMDA-ANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
FC N +Y R V + + +LC I+I+G+ FL+ VR +V L I
Sbjct: 170 AFCNFKKNVNYTDYIRRVQAIHLE----VLNHKRLC-IRIKGNHFLYKMVRNIVGTLIYI 224
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQS 350
G+G ++ I S+L + RK AP L LQ+
Sbjct: 225 GKGKLMVEDIPSILQSQD--RKMAGVTAPAHGLFLQT 259
>gi|291296648|ref|YP_003508046.1| tRNA pseudouridine synthase A [Meiothermus ruber DSM 1279]
gi|290471607|gb|ADD29026.1| tRNA pseudouridine synthase A [Meiothermus ruber DSM 1279]
Length = 263
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 107/257 (41%), Gaps = 50/257 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G F G + E TV+ E+ AL + + + + CGRTD GV
Sbjct: 13 RRILLTLEYDGSGFAGLQTQAQGERTVQQELEAALSQ----IPGARPKIWP-CGRTDAGV 67
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++ + NI +A LN +LP DIR +
Sbjct: 68 HALAMPVHYDTLDNIPTEKIPHA--------------------LNTLLPPDIRALAAQEV 107
Query: 212 PTDFSARFSCISREYKY---------------FFW-RENLNLSAMESAGKKFVGEHDFRN 255
P DF AR SC REY+Y +W +LNL M A + VG HDF+
Sbjct: 108 PADFHARKSCHWREYRYRILQRRMPPALDRHRVWWIPHSLNLIPMRHALECLVGTHDFKA 167
Query: 256 FC-KMDAANVHN-YKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
F K + A V Y+ H+ E+ P EG + I+ GS FL QVR MV L I
Sbjct: 168 FAVKEERATVREIYRAHL---EVWPT----EGGREIWIEFVGSGFLRGQVRSMVGTLVEI 220
Query: 314 GQGLESIDVIESLLDTN 330
G G I+SLL +
Sbjct: 221 GLGKRDSSSIQSLLASG 237
>gi|306835272|ref|ZP_07468304.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726]
gi|304568865|gb|EFM44398.1| tRNA pseudouridine synthase A [Corynebacterium accolens ATCC 49726]
Length = 293
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 113/277 (40%), Gaps = 43/277 (15%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F+G+A TV+ LE+ ++ + E + GRTD GV + G
Sbjct: 21 LDLAYDGTNFHGWAKQKGGLRTVQG----VLEEQLAMIV-RTEVPLTVAGRTDAGVHARG 75
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + E Q D VR L ++LP+D+RV G AP F
Sbjct: 76 QVAHVDVPQEMLE------------QRSVAGDPGTIVRRLAKLLPEDVRVHGCEFAPEGF 123
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y Y W + +++ AM+ A VG HDF FCK
Sbjct: 124 DARFSALRRHYVYRITTSPRGALPTRARDTAEWFKPVDIDAMQDAATALVGLHDFAAFCK 183
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+A + + +P E QL ++ AF W VR +V +G+G
Sbjct: 184 AKPNATTIRELQEFSWQDVSTP-----EEPQLFEARVTADAFCWSMVRSLVGCCLSVGEG 238
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+D +LL R + +AP L L D+
Sbjct: 239 RRDVDFAAALLQETK--RSSRIPVAPAKGLSLVQVDY 273
>gi|343520539|ref|ZP_08757508.1| tRNA pseudouridine synthase A [Parvimonas sp. oral taxon 393 str.
F0440]
gi|343397497|gb|EGV10031.1| tRNA pseudouridine synthase A [Parvimonas sp. oral taxon 393 str.
F0440]
Length = 247
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 111/254 (43%), Gaps = 49/254 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G F+GF ++ TV+ EI AL+K + + GRTD+GV
Sbjct: 2 RNIMLTISYDGSLFFGFQKQDDV-ITVQGEIESALKKIT-----GENINIISAGRTDRGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
S+ +I + SN+ N A LN LP +RV+
Sbjct: 56 HSLRHIINFHTESNVGVLNFKTA--------------------LNHFLPIGVRVLDSKEV 95
Query: 212 PTDFSARFSCISREYKYFF------------WREN----LNLSAMESAGKKFVGEHDFRN 255
DF +RF + YKY ++ N L++ M+ A + F+G+ F+
Sbjct: 96 SEDFHSRFDATMKTYKYILNLDEVMDPIYYNYKANFPYPLDIEKMQRAKEHFIGKKSFKA 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F N N R + SFEI E N L + I+G +F+ +QVR MV L IG+
Sbjct: 156 FMGPRTGNT-NPVRDIKSFEIYK-----ENNDLIFL-IKGQSFIRNQVRIMVGTLVDIGR 208
Query: 316 GLESIDVIESLLDT 329
GL D +E +LD+
Sbjct: 209 GLIEEDELEKILDS 222
>gi|449441496|ref|XP_004138518.1| PREDICTED: tRNA pseudouridine synthase A 1-like [Cucumis sativus]
gi|449518841|ref|XP_004166444.1| PREDICTED: tRNA pseudouridine synthase A 1-like [Cucumis sativus]
Length = 335
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 109/248 (43%), Gaps = 43/248 (17%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ + PT++ I +AL L ++K+ H RTDKGV + G
Sbjct: 58 LLIAYDGTRYAGWQYQRS-PPTIQCLIEEALIGATKL--ERKDLHLVGASRTDKGVHAWG 114
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N + +A+ LN +LP DIRV SPA DF
Sbjct: 115 QVAHFVTPFNYDSLESVHAA-------------------LNGLLPVDIRVREMSPAVPDF 155
Query: 216 SARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKM 259
ARFS +S+ Y Y + LN +AM+ A FVG+HDF F
Sbjct: 156 HARFSTLSKVYHYKIYSGTIMDPFQRCYTYHCVYKLNYAAMKEAANYFVGKHDFSAF--- 212
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
N + R V ++ + E L +++ GS FL+ QVR MV +L IG+
Sbjct: 213 --TNAAHNDRVVNPVKVIFRFDVIEMGALVQLEVEGSGFLYRQVRNMVGLLVQIGKEALP 270
Query: 320 IDVIESLL 327
+V+ +L
Sbjct: 271 PEVVPKIL 278
>gi|404422878|ref|ZP_11004550.1| tRNA pseudouridine synthase A [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
gi|403655695|gb|EJZ10540.1| tRNA pseudouridine synthase A [Mycobacterium fortuitum subsp.
fortuitum DSM 46621]
Length = 289
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 115/279 (41%), Gaps = 47/279 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKT-RLLVADKKESHYSRCGRTDKGVSSV 154
L V Y G F G+A TV I +AL R V + GRTD GV +
Sbjct: 18 LDVAYDGTDFAGWAVQAGQR-TVAGVIDEALSTVFRTPVVTRT------AGRTDTGVHAT 70
Query: 155 GQVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + ++ + + G+ + VR L R+LP D+R+ APT
Sbjct: 71 GQVAHVDVPADALPHAYPRSTRAGDA-------EFTPLVRRLGRLLPTDVRIRDVVRAPT 123
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y W ++L+L AM A +K +G +DF F
Sbjct: 124 GFDARFSALRRHYTYRLSLAPYGVEPAEARFVTPWSKSLDLDAMAEASRKLLGLNDFAAF 183
Query: 257 C--KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
C + A + + +R +G+ + A + AF W+ VR +V + +G
Sbjct: 184 CRHRPGATTIRDLQR---------LEWVRDGHYVTAY-VTADAFCWNMVRSLVGAMLAVG 233
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G S + LL G R + AP L L D+
Sbjct: 234 EGRRSAEWTAGLLSETG--RSSDFAAAPARGLTLVQVDY 270
>gi|83645231|ref|YP_433666.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396]
gi|83633274|gb|ABC29241.1| tRNA pseudouridine synthase A [Hahella chejuensis KCTC 2396]
Length = 283
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 50/276 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VAL + Y G R++G+ + + P+V++E+ AL K VAD S GRTD GV +
Sbjct: 24 VALVLGYDGSRYHGWQAQNSGVPSVQAEVESALAK----VADHPVSVVC-AGRTDAGVHA 78
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
V QV+ + + + + +N LP D+ V P
Sbjct: 79 VNQVVHF--------------------ETKALRSPYSWAMGVNHFLPADVSVSWAGAVPE 118
Query: 214 DFSARFSCISREYKYFF--------WREN--------LNLSAMESAGKKFVGEHDFRNFC 257
DF AR++ SR Y+Y W N L++ +M +AG +GE+DF F
Sbjct: 119 DFHARYTATSRSYRYVIYNHPIRPAWLNNSVTWNYRPLDVESMSAAGAHLIGENDFSAFR 178
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
D + + R++T E+S + I++ +AFL H VR + L +G G
Sbjct: 179 GSDCQSKSPF-RNLTRLEVS------RFGDMVVIEVEANAFLHHMVRNISGTLMAVGTGK 231
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ D + +L + R AP L L S +
Sbjct: 232 KPSDWVADVLASKK--RSKAGVTAPPFGLYLTSVTY 265
>gi|406878399|gb|EKD27313.1| hypothetical protein ACD_79C00762G0001 [uncultured bacterium]
Length = 258
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/263 (28%), Positives = 119/263 (45%), Gaps = 61/263 (23%)
Query: 89 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKAL-----EKTRLLVADKKESHYSR 143
+F+R + L + Y G ++G+ N + T++ EI +A+ +K R+ A
Sbjct: 13 NFERNIRLNISYNGFHYHGWQIQSNAK-TIQGEIKEAISVFIKDKIRIFGA--------- 62
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDI 203
RTD GV ++GQV Y S+ K C DEI ++ LN+ LP DI
Sbjct: 63 -SRTDTGVHALGQVANFYTNSD-KTC-----------------DEIAWI--LNKRLPGDI 101
Query: 204 RVIGWSPAPTDFSARFSCISREYKYFFWR-----------------ENLNLSAMESAGKK 246
+ P DF+AR S + Y+Y W +L++ +M A KK
Sbjct: 102 NIKSALDVPKDFNARRSAKGKHYRYKIWAGYQKPVFEKKLVYWCPCRDLDIDSMICASKK 161
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+G HDF +F + + RHV EI + + L ++G +FL+ VR +
Sbjct: 162 LIGTHDFSSFASNSKKIIEDKIRHVAEIEIK------KEDNLIVFDVKGVSFLYKMVRGI 215
Query: 307 VAVLFMIGQGLESIDVIESLLDT 329
LF +G+G + ID IE LL++
Sbjct: 216 CGTLFEMGRG-KKID-IEELLES 236
>gi|347549899|ref|YP_004856227.1| putative pseudouridylate synthase I [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982970|emb|CBW87007.1| Putative pseudouridylate synthase I [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 248
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 121/280 (43%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL+K + K + GRTD GV
Sbjct: 3 RYKAV-ISYDGSGFYGYQVQPNTR-TVQAEIEKALKK----MHKGKSVRVTASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ A E Q + L + P DI I A
Sbjct: 57 HAKGQVI---------HFDSELAVSAEKFQ-----------KALQVMTPFDISFITVEEA 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R LN+ M+ A ++ +GEHDF +
Sbjct: 97 PADFHARFGTVGKEYRYVVKRTKVFDPFSRNFALHYPYELNVEQMKIASERLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E N+ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDNETLVICFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 G-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G + D+ ++LL + +K AP L L D++
Sbjct: 211 GRISPDDITKALLARD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|194744150|ref|XP_001954558.1| GF18329 [Drosophila ananassae]
gi|190627595|gb|EDV43119.1| GF18329 [Drosophila ananassae]
Length = 410
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/327 (25%), Positives = 139/327 (42%), Gaps = 63/327 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGR 146
++ A+ + Y G +YG + M+ T+E E+FKA+ K + + D E + + R R
Sbjct: 69 RKKSAILLSYCGANYYGMQRNPGMQ-TIEEELFKAMLKHKWITEDSFEQVQIACFQRAAR 127
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ QV ++ ++ DE+D + N LP IR+
Sbjct: 128 TDKGVSAARQVCSV-----------------------KLPDELD-LEAFNADLPDQIRLF 163
Query: 207 GWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD-----------FRN 255
G F+A+ C +R Y Y L A S+ +K HD R
Sbjct: 164 GVERVTKGFNAKDQCNARTYTY-----TLPTVAFASSEEKIEDLHDTYRITPELLEKVRE 218
Query: 256 FCKM--DAANVHNY-----------KRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQ 302
K+ N HN+ KR + SF S ++S +G + +K++G +F+ HQ
Sbjct: 219 TLKLYEGTKNFHNFTSKKNFLDPSAKRFIMSFVSSDPFLSPQGIEFVTLKVKGQSFMLHQ 278
Query: 303 VRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSL 362
+R MV + I +G + + +E L + MAP + LVL + ++
Sbjct: 279 IRKMVGLAIAIVRGNTTTESLERALTEERL----DLPMAPGLGLVLDTVHYERYNDRYGK 334
Query: 363 DAGHDLRLHLRNECQVYQ-LQAAIFHE 388
D H+ + E QV + ++ IF +
Sbjct: 335 DGIHNPLTWEKQEKQVNEFIEREIFSQ 361
>gi|227832275|ref|YP_002833982.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC
700975]
gi|262183869|ref|ZP_06043290.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC
700975]
gi|227453291|gb|ACP32044.1| tRNA pseudouridine synthase A [Corynebacterium aurimucosum ATCC
700975]
Length = 286
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 115/277 (41%), Gaps = 43/277 (15%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F+G+A TV+ + + +L + + + GRTD GV + G
Sbjct: 9 LDLAYDGTDFHGWARQKGGLRTVQQTV-----EEKLSMVLRHPVELTVAGRTDAGVHASG 63
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEI-DYVRVLNRVLPKDIRVIGWSPAPTD 214
QV +T A++ + I+ E VR L ++LP D+RV + D
Sbjct: 64 QV---------AHFDTTRAAL----SQRSIDGEPHKLVRRLAKLLPVDVRVHACTEVSPD 110
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y Y W + ++L M++A + VG +DF FC
Sbjct: 111 FDARFSALRRHYVYRITTHPRGALPTRARDTATWLKPVDLDLMQAAADRLVGLNDFVAFC 170
Query: 258 KMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
K A H R + +FE E QL + AF W VRC+V +G+G
Sbjct: 171 K---AKPHATTIRELLAFEWKDVSTPAE-PQLYEAHVSADAFCWSMVRCLVGCCLRVGEG 226
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
++ +L N R Q +AP L L D+
Sbjct: 227 SRDVEFAGQML--NETSRSSQIPLAPAAGLSLVGVDY 261
>gi|432886555|ref|XP_004074895.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Oryzias latipes]
Length = 416
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 56/304 (18%)
Query: 77 KVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVA 134
KV+E+ + + K+ VAL + Y G+ +YG + T+E ++ AL K+ +
Sbjct: 60 KVEEEHTENERKYPKKKVALLLAYSGKGYYGMQRNPGTSQFRTIEDDLVSALVKSGCIPG 119
Query: 135 DK----KESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID 190
+ K+ + RC RTDKGVS+ GQV+++ + IED ++
Sbjct: 120 NHGDEMKKMSFQRCARTDKGVSAAGQVVSLKVW--------------------LIEDVLE 159
Query: 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYF------------------FWR 232
+ N LP IRV+G F+++ +C +R Y Y F
Sbjct: 160 KI---NEHLPPQIRVLGLKRVTQGFNSKNNCDARTYSYMLPTVAFSQKDYDVGNIAAFRL 216
Query: 233 ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIK 292
+ L + + G H+F NF A + + +R++T +I + I
Sbjct: 217 QTETLQRVNRLFSLYKGTHNFHNFTSQKAPSDPSARRYITEMSCGEPFIR-NNCEFAVIN 275
Query: 293 IRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLL--DTNGIPRKPQYNMAPEIPLVLQS 350
+RG +F+ HQ+R M+ ++ + +G VIE + +P+ AP + LVL+
Sbjct: 276 VRGQSFMLHQIRKMIGLVIAVIKGYAQEKVIERSWGEEKVDVPK------APGLGLVLEM 329
Query: 351 CDFD 354
FD
Sbjct: 330 VHFD 333
>gi|328951248|ref|YP_004368583.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM
14884]
gi|328451572|gb|AEB12473.1| tRNA pseudouridine synthase A [Marinithermus hydrothermalis DSM
14884]
Length = 249
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 109/253 (43%), Gaps = 52/253 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G RF GF E TV++E+ AL + V GRTD GV
Sbjct: 2 RRIKLTLEYDGTRFAGFQRQAKGERTVQAELESALAQIPGAV-----PKVVAAGRTDAGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDE-IDYVRVLNRVLPKDIRVIGWSP 210
++G V+ +T E++I E I Y LNR+LP D+R +
Sbjct: 57 HALGMVV---------HYDT----------EDRIPPEKIPYA--LNRLLPPDVRALAAEA 95
Query: 211 APTDFSARFSCISREYKY---------------FFW-RENLNLSAMESAGKKFVGEHDFR 254
AP F AR+SC R Y+Y +W + L+ +AM+ F+GEHDF+
Sbjct: 96 APPGFHARYSCHWRRYRYRILNRQMPSALARERTWWVPKPLDANAMQQGLAHFLGEHDFK 155
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
F + R T + + G ++ I + G+ FL QVR MV L +G
Sbjct: 156 AFATQE--------RRGTVRTLYRARLERCGEEIV-IDLVGNGFLRGQVRAMVGTLVEVG 206
Query: 315 QGLESIDVIESLL 327
G DVI LL
Sbjct: 207 LGKRDPDVIAWLL 219
>gi|375290217|ref|YP_005124757.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae 241]
gi|376245051|ref|YP_005135290.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC01]
gi|42559717|sp|P60349.1|TRUA_CORDI RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|371579888|gb|AEX43555.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae 241]
gi|372107681|gb|AEX73742.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC01]
Length = 288
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 38/252 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + + K +E T LV ++ + GRTD GV +
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD---LRTVQKIIEDTLTLVL-QRPIDLTVAGRTDAGVHA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + E + D +R L R++P D+R+ S P
Sbjct: 64 TGQVAHFDVDPAALETRSIAG------------DPARLIRRLARLMPDDVRIHNMSFVPA 111
Query: 214 DFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS + R Y Y W ++++SAM++A +G HDF F
Sbjct: 112 EFDARFSALRRHYVYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAF 171
Query: 257 CKM-DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK + A+ + T ++S + + QL + AF W VR +V ++G+
Sbjct: 172 CKYREGASTIRDLQEFTWHDVS----TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGE 227
Query: 316 GLESIDVIESLL 327
G + E LL
Sbjct: 228 GKRADGFTEHLL 239
>gi|158319577|ref|YP_001512084.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
gi|158139776|gb|ABW18088.1| tRNA pseudouridine synthase A [Alkaliphilus oremlandii OhILAs]
Length = 248
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 106/254 (41%), Gaps = 49/254 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + +++ Y G + G+ N T++ EI KAL+K + K+ GRTD GV
Sbjct: 2 RNIMIEIEYDGSNYSGWQVQPN-AITIQEEIMKALKKL-----EGKDVVIHGSGRTDAGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV + NI A +N LPKDI +I
Sbjct: 56 HAYGQVATFLMERNIPVERLPLA--------------------MNSNLPKDITIIDAKEV 95
Query: 212 PTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRN 255
P DF AR+S I + Y Y + L+ S M A K +G HDFR
Sbjct: 96 PMDFHARYSAIGKRYIYHIYESRYRSAILRNYSYHINYKLDRSKMMEASKLLIGTHDFRG 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F + ++V + R + S E +G + I I G FL++ VR + L IG
Sbjct: 156 FMS-NGSSVEDTVRTIKSLEFKS-----DGENIYMI-IEGDGFLYNMVRIITGTLVQIGA 208
Query: 316 GLESIDVIESLLDT 329
G + ++ IE +L T
Sbjct: 209 GNKPLEQIEKILKT 222
>gi|294630922|ref|ZP_06709482.1| tRNA pseudouridine synthase A [Streptomyces sp. e14]
gi|292834255|gb|EFF92604.1| tRNA pseudouridine synthase A [Streptomyces sp. e14]
Length = 284
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 103/245 (42%), Gaps = 44/245 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G F+G+A + TV+ EI AL R + ++ + GRTD GV +
Sbjct: 12 VRLDLSYDGSAFHGWAKQAGGKRTVQGEIEDAL---RTVTRSQETYELTVAGRTDAGVHA 68
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + E V E E + R+ R LP+D+RV PAP+
Sbjct: 69 RGQVAHV--------------DLPEQVWREHHEKLLK--RLAGR-LPRDVRVWALRPAPS 111
Query: 214 DFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFRNF 256
F+ARFS + R Y Y W + L++ AM A ++ +GEHDF +
Sbjct: 112 GFNARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARRLLGEHDFAAY 171
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
CK T + + + + +R AF + VR ++ L +G G
Sbjct: 172 CKKREGA-------TTIRTLQELSLRRGADGIITATVRADAFCHNMVRSLIGALLFVGDG 224
Query: 317 LESID 321
+ D
Sbjct: 225 HRTPD 229
>gi|375292434|ref|YP_005126973.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae INCA
402]
gi|371582105|gb|AEX45771.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae INCA
402]
Length = 288
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 38/252 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + + K +E T LV ++ + GRTD GV +
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD---LRTVQKIIEDTLTLVL-QRPIDLTVAGRTDAGVHA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + E + D +R L R++P D+R+ S P
Sbjct: 64 TGQVAHFDVDPAALETRSIAG------------DPARLIRRLARLMPDDVRIHNMSFVPA 111
Query: 214 DFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS + R Y Y W ++++SAM++A +G HDF F
Sbjct: 112 EFDARFSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQTAADALIGMHDFAAF 171
Query: 257 CKM-DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK + A+ + T ++S + + QL + AF W VR +V ++G+
Sbjct: 172 CKYREGASTIRDLQEFTWHDVS----TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGE 227
Query: 316 GLESIDVIESLL 327
G + E LL
Sbjct: 228 GRRADGFTEHLL 239
>gi|38233160|ref|NP_938927.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae NCTC
13129]
gi|38199419|emb|CAE49063.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae]
Length = 295
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 38/252 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + + K +E T LV ++ + GRTD GV +
Sbjct: 15 IRLDLAYDGTDFHGWARQGDSD---LRTVQKIIEDTLTLVL-QRPIDLTVAGRTDAGVHA 70
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV ++ S+ D +R L R++P D+R+ S P
Sbjct: 71 TGQVAHF----DVDPAALETRSIAG--------DPARLIRRLARLMPDDVRIHNMSFVPA 118
Query: 214 DFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS + R Y Y W ++++SAM++A +G HDF F
Sbjct: 119 EFDARFSALRRHYVYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAF 178
Query: 257 CKM-DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK + A+ + T ++S + + QL + AF W VR +V ++G+
Sbjct: 179 CKYREGASTIRDLQEFTWHDVS----TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGE 234
Query: 316 GLESIDVIESLL 327
G + E LL
Sbjct: 235 GKRADGFTEHLL 246
>gi|160947056|ref|ZP_02094223.1| hypothetical protein PEPMIC_00987 [Parvimonas micra ATCC 33270]
gi|158446190|gb|EDP23185.1| tRNA pseudouridine synthase A [Parvimonas micra ATCC 33270]
Length = 247
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 112/254 (44%), Gaps = 49/254 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G F+GF N+ TV+ EI AL+K ++ + GRTD+GV
Sbjct: 2 RNIMLTISYDGSLFFGFQKQKNV-VTVQGEIEDALKKI-----TEENINIISAGRTDRGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
S+ +I + SN+ N A LN LP +RV+
Sbjct: 56 HSLRHIINFHTESNVGVLNFKTA--------------------LNHFLPIGVRVLDSKEV 95
Query: 212 PTDFSARFSCISREYKYFF------------WREN----LNLSAMESAGKKFVGEHDFRN 255
+F +RF + YKY ++ N L++ M+ A + F+G F+
Sbjct: 96 SENFHSRFDAKMKTYKYILNLDEVMDPIYYNYKANFPYPLDIEKMKRAKEYFIGRKSFKA 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F N+ N R + SFEI E N L + I+G +F+ +QVR MV L IG+
Sbjct: 156 FMGPRTGNI-NPIREINSFEIYK-----ENNDLIFL-IKGQSFIRNQVRIMVGTLVDIGR 208
Query: 316 GLESIDVIESLLDT 329
GL D +E +LD+
Sbjct: 209 GLIEEDELERILDS 222
>gi|387877652|ref|YP_006307956.1| tRNA pseudouridine synthase A [Mycobacterium sp. MOTT36Y]
gi|386791110|gb|AFJ37229.1| tRNA pseudouridine synthase A [Mycobacterium sp. MOTT36Y]
Length = 251
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 93/230 (40%), Gaps = 39/230 (16%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNA-SMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV + ++ NA S V E + + +R L R LP D
Sbjct: 22 AGRTDAGVHATGQVAHV----DVPAAALPNAYSRAPHVGEAEF---LPLLRRLGRFLPAD 74
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK 245
+RV+ AP F ARFS + R Y Y W L++ AM +A +
Sbjct: 75 VRVVDIVRAPAGFDARFSALRRHYVYRLSTAPWGVDPQQARYVTAWPRPLDVEAMATASR 134
Query: 246 KFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
+G HDF FC+ +A + + +R E + G L ++ AF W V
Sbjct: 135 DLLGLHDFAAFCRHRENATTIRDLQR----LEWT------RGGDLITARVSADAFCWSMV 184
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
R +V L +G+ + LL R Y AP L L D+
Sbjct: 185 RSLVGALLAVGEHRRPVSWCRELLSATA--RSSDYATAPAHGLTLVGVDY 232
>gi|254854197|ref|ZP_05243545.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-503]
gi|300763651|ref|ZP_07073649.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL N1-017]
gi|404282163|ref|YP_006683061.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2755]
gi|404287977|ref|YP_006694563.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|258607589|gb|EEW20197.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-503]
gi|300515928|gb|EFK42977.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL N1-017]
gi|404228798|emb|CBY50203.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2755]
gi|404246906|emb|CBY05131.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 7
str. SLCC2482]
Length = 248
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 122/280 (43%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALTK----MHKGKTVRITASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQAMTPFDISFLTVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L++S M+ A K+ +GEHDF +
Sbjct: 97 PDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 G-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G + D+ E+LL + +K AP L L D++
Sbjct: 211 GRISPDDISEALLARD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|419860166|ref|ZP_14382811.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387983374|gb|EIK56851.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 288
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 38/252 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + + K +E T LV ++ + GRTD GV +
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD---LRTVQKIIEDTLTLVL-QRPIDLTVAGRTDAGVHA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + E + D +R L R++P D+R+ S P
Sbjct: 64 TGQVAHFDVDPAALETRSIAG------------DPARLIRRLARLMPADVRIHNMSFVPA 111
Query: 214 DFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS + R Y Y W ++++SAM++A +G HDF F
Sbjct: 112 EFDARFSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAF 171
Query: 257 CKM-DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK + A+ + T ++S + + QL + AF W VR +V ++G+
Sbjct: 172 CKYREGASTIRDLQEFTWHDVS----TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGE 227
Query: 316 GLESIDVIESLL 327
G + E LL
Sbjct: 228 GKRADGFTEHLL 239
>gi|436840540|ref|YP_007324918.1| tRNA pseudouridine synthase A [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432169446|emb|CCO22814.1| tRNA pseudouridine synthase A [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 276
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 108/250 (43%), Gaps = 47/250 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F G+ N+ TV+ E+ KA+ + H S GRTD GV +
Sbjct: 13 LKLTLAYDGTDFCGWQFQPNLR-TVQGELEKAISH---ITGFPVRVHGS--GRTDSGVHA 66
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQ++ + L N + + + LN +LP D+ V+ +
Sbjct: 67 RGQIVHLDLPDN--------------------RTSVPWQKSLNSLLPDDVTVLDCAYVSG 106
Query: 214 DFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFC 257
DF +RFS + + Y Y W EN L+L AM+ A K F+G HDF +F
Sbjct: 107 DFHSRFSTVRKRYSYSIWVENDFCFPWRRKYVWKCGSLDLDAMDQAMKMFLGMHDFASFQ 166
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
M V++ R+V F P E + + G+ FL VR MV L IG+G
Sbjct: 167 NM-GTEVNSTVRNVLEFSRRPGETPHE----IKLDVCGTGFLKQMVRNMVGCLVKIGRGK 221
Query: 318 ESIDVIESLL 327
E + + SLL
Sbjct: 222 EKPEFVRSLL 231
>gi|376253658|ref|YP_005142117.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae PW8]
gi|376256455|ref|YP_005144346.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae VA01]
gi|376292609|ref|YP_005164283.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC02]
gi|372109932|gb|AEX75992.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae HC02]
gi|372116742|gb|AEX69212.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae PW8]
gi|372118972|gb|AEX82706.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae VA01]
Length = 288
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 108/252 (42%), Gaps = 38/252 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + + K +E T LV ++ + GRTD GV +
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD---LRTVQKIIEDTLTLVL-QRPIDLTVAGRTDAGVHA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + E + D +R L R++P D+R+ S P
Sbjct: 64 TGQVAHFDVDPAALETRSIAG------------DPARLIRRLARLMPDDVRIHNMSFVPA 111
Query: 214 DFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS + R Y Y W ++++SAM++A +G HDF F
Sbjct: 112 EFDARFSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAF 171
Query: 257 CKM-DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK + A+ + T ++S + + QL + AF W VR +V ++G+
Sbjct: 172 CKYREGASTIRDLQEFTWHDVS----TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGE 227
Query: 316 GLESIDVIESLL 327
G + E LL
Sbjct: 228 GKRADGFTEHLL 239
>gi|376287029|ref|YP_005159595.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae BH8]
gi|371584363|gb|AEX48028.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae BH8]
Length = 288
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 112/252 (44%), Gaps = 38/252 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + + K +E T LV ++ + GRTD GV +
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD---LRTVQKIIEDTLKLVL-QRPIDLTVAGRTDAGVHA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQ I + + A++ ET D +R L R++P D+R+ S P
Sbjct: 64 TGQ---------IAHFDVDPAAL-ET--RSIAGDPARLIRRLARLMPDDVRIHNMSFVPA 111
Query: 214 DFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS + R Y Y W ++++SAM++A +G HDF F
Sbjct: 112 EFDARFSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQTAADALIGMHDFAAF 171
Query: 257 CKM-DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK + A+ + T ++S + + QL + AF W VR +V ++G+
Sbjct: 172 CKYREGASTIRDLQEFTWHDVS----TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGE 227
Query: 316 GLESIDVIESLL 327
G + E LL
Sbjct: 228 GKRADGFTEGLL 239
>gi|402828551|ref|ZP_10877438.1| tRNA pseudouridine(38-40) synthase [Slackia sp. CM382]
gi|402286359|gb|EJU34834.1| tRNA pseudouridine(38-40) synthase [Slackia sp. CM382]
Length = 319
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 117/286 (40%), Gaps = 48/286 (16%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
R VAL V Y G F GFA TV+ E+ +AL V ++ GRTD
Sbjct: 59 SRCVALGVAYDGAPFAGFARQAESHVTTVQGELERALS-----VLYRRAVDTVCAGRTDA 113
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV ++GQV++ L T +E ++ +N ++ + I V
Sbjct: 114 GVHALGQVVSFDL----------------TEEEFASRPLRTLMKSMNALVDERITVTCAE 157
Query: 210 PAPTDFSARFSCISREYKYFFWREN-----------------LNLSAMESAGKKFVGEHD 252
P FSARF SREY+YF N L++ AM +A + VGEHD
Sbjct: 158 ERPAGFSARFDATSREYRYFIATGNARPVLIARSVWHLRGAPLDVDAMNAAARLLVGEHD 217
Query: 253 FRNFCKMDAA-----NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
F++FC +A + R V ++ ++ G + ++I G+AFL +R +V
Sbjct: 218 FKSFCVASSALHLEGEGRSTCRRVIEADVRSTHVM--GTPVVEVRIVGNAFLHSMIRIIV 275
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
L +GQG + +L R AP L S +
Sbjct: 276 GTLVAVGQGRRDASWVADVLAAR--DRTAAGETAPACGLTFWSVRY 319
>gi|301605366|ref|XP_002932295.1| PREDICTED: tRNA pseudouridine synthase A-like [Xenopus (Silurana)
tropicalis]
Length = 394
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 115/287 (40%), Gaps = 50/287 (17%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNME--PTVESEIFKALEKTR----LLVADKKESHYSRC 144
KR A+ + Y G+ +YG D PT+ES + AL + R + K+ + RC
Sbjct: 68 KRKFAIMLAYCGRGYYGMQMDLTRPNFPTIESALISALIQARCIPEMFYMQMKQLKFQRC 127
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS++ Q++++ L + C+ + V +N LP +I
Sbjct: 128 ARTDKGVSALSQLVSVRL---LPSCS-------------------NPVEKINSHLPPEIL 165
Query: 205 VIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKF----------------- 247
+I F + C R Y Y L+ A F
Sbjct: 166 IIDMKRVTKGFCPKKMCDKRSYSYMVPTFALSCCAPSVPDSNFRMPREDFHNINNLLSFY 225
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF A + RH+ S ++ F G + I I G +F+ +Q+R MV
Sbjct: 226 KGTHNFHNFTSRKAFEDPSSFRHMLDVSCSEPFV-FHGTEFAQIHITGQSFMLYQIRKMV 284
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
++ I QG+ D + + I P AP + LVL+ FD
Sbjct: 285 GLIIAIAQGIVPADFLPQCMQREKINIPP----APGLGLVLERVHFD 327
>gi|46908770|ref|YP_015159.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b
str. F2365]
gi|47093538|ref|ZP_00231299.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 4b
H7858]
gi|226225144|ref|YP_002759251.1| pseudouridylate synthase I [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|254825041|ref|ZP_05230042.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-194]
gi|254992719|ref|ZP_05274909.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J2-064]
gi|255520577|ref|ZP_05387814.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-175]
gi|386733283|ref|YP_006206779.1| tRNA pseudouridine synthase A [Listeria monocytogenes 07PF0776]
gi|405753805|ref|YP_006677270.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2378]
gi|406705333|ref|YP_006755687.1| tRNA pseudouridine synthase A [Listeria monocytogenes L312]
gi|417313813|ref|ZP_12100519.1| tRNA pseudouridine synthase A [Listeria monocytogenes J1816]
gi|424715408|ref|YP_007016123.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b
str. LL195]
gi|51316671|sp|Q71WI0.1|TRUA_LISMF RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|259550404|sp|C1KZ13.1|TRUA_LISMC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|46882043|gb|AAT05336.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b
str. F2365]
gi|47018098|gb|EAL08870.1| tRNA pseudouridine synthase A [Listeria monocytogenes str. 4b
H7858]
gi|225877606|emb|CAS06320.1| Putative pseudouridylate synthase I [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293594283|gb|EFG02044.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-194]
gi|328468084|gb|EGF39090.1| tRNA pseudouridine synthase A [Listeria monocytogenes J1816]
gi|384392041|gb|AFH81111.1| tRNA pseudouridine synthase A [Listeria monocytogenes 07PF0776]
gi|404223005|emb|CBY74368.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2378]
gi|406362363|emb|CBY68636.1| tRNA pseudouridine synthase A [Listeria monocytogenes L312]
gi|424014592|emb|CCO65132.1| tRNA pseudouridine synthase A [Listeria monocytogenes serotype 4b
str. LL195]
Length = 248
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 122/280 (43%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALTK----MHKGKTVRITASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQVMTPFDISFLTVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L++S M+ A K+ +GEHDF +
Sbjct: 97 PDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 G-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G + D+ E+LL + +K AP L L D++
Sbjct: 211 GRISPDDISEALLARD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|302385211|ref|YP_003821033.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1]
gi|302195839|gb|ADL03410.1| tRNA pseudouridine synthase A [Clostridium saccharolyticum WM1]
Length = 248
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 121/276 (43%), Gaps = 60/276 (21%)
Query: 100 YFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIA 159
Y G R+ G+ GN E T++ +I + LE+ + E H S GRTD GV ++ QV
Sbjct: 11 YDGSRYDGWQKQGNTEQTIQGKIEQVLER---MTGQAVEVHGS--GRTDAGVHALAQVA- 64
Query: 160 IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
N M + ++I++ LN+ LP+DIRVI PA F +R
Sbjct: 65 -------------NFHMDGKMASKEIQE------YLNQYLPEDIRVITLEPAKERFHSRL 105
Query: 220 SCISREYKY---------FFWRE-------NLNLSAMESAGKKFVGEHDFRNFC---KMD 260
+ + Y Y F R+ +LN+ AME A GEHDF++FC KM
Sbjct: 106 NAQEKTYLYRIEMGERKQVFERKYIYGLYKSLNVEAMERASAYLTGEHDFKSFCSNRKMK 165
Query: 261 AANVHNYKRHVTSFEISPCYISFE--GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ V K I FE G++L I+ G+ FL++ VR + L +G G
Sbjct: 166 KSTVRVLKE-----------IEFEQQGSRLL-IRYTGNGFLYNMVRIITGTLIEVGLGQR 213
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ ++ +L+ R AP L L+ ++
Sbjct: 214 KAEDMKGILEAK--DRNQAGFTAPPEGLFLEQVRYN 247
>gi|405983879|ref|ZP_11042184.1| tRNA pseudouridine(38-40) synthase [Slackia piriformis YIT 12062]
gi|404388694|gb|EJZ83776.1| tRNA pseudouridine(38-40) synthase [Slackia piriformis YIT 12062]
Length = 270
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 115/255 (45%), Gaps = 42/255 (16%)
Query: 94 VALKVMYFGQRFYGFASDG-NMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVS 152
+AL V Y G+ F GFA + TV+ E+ +AL LL +E GRTD GV
Sbjct: 4 IALAVAYNGEPFAGFARQAEDHVKTVQGELEQALS---LLY--HREVKTVCAGRTDAGVH 58
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
++GQV++ +I E +E Q + R +N ++ + I +
Sbjct: 59 ALGQVVSF----DISE------------EELQAKPLRSLQRSMNALVDEAISISAAEEKA 102
Query: 213 TDFSARFSCISREYKY--------------FFWRE---NLNLSAMESAGKKFVGEHDFRN 255
FSARF REY Y W +L++ AM A +FVGEHDF++
Sbjct: 103 EGFSARFDAQWREYHYHICTQSARPVLIMPLVWHLGGLSLDVDAMNQAAARFVGEHDFKS 162
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFE---GNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
FC +A++ T + C + E G + +++ G+AFL VR MV L
Sbjct: 163 FCMAASAHIIEADGRSTCRNVMTCGVYEEVLAGTPVITVRVVGNAFLHSMVRTMVGTLVE 222
Query: 313 IGQGLESIDVIESLL 327
+G+G S+ I+ +L
Sbjct: 223 VGRGKRSVAWIDEVL 237
>gi|336419183|ref|ZP_08599449.1| tRNA pseudouridine synthase A [Fusobacterium sp. 11_3_2]
gi|336163874|gb|EGN66788.1| tRNA pseudouridine synthase A [Fusobacterium sp. 11_3_2]
Length = 245
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 115/274 (41%), Gaps = 48/274 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L+ Y G R+YGF N + TV+ EI K L + K+E + GRTD+GV +
Sbjct: 6 IKLEFRYDGSRYYGFQRQPN-KITVQGEIEKILR-----IVTKEEINLISAGRTDRGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV Y S I IE Y +L R LPKDI ++
Sbjct: 60 NHQVSNFYTSSTI-----------------PIEK---YKYLLTRALPKDIDILSVEEVDE 99
Query: 214 DFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
+F+AR + REY Y F +E +++ +E FVG HDF+NF
Sbjct: 100 NFNARHNAKMREYIYIISWIKNPFEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLN 159
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
D + VT EI + + G I I+GSAFL QVR MV I G
Sbjct: 160 DCVS------KVTIREIYQIEVKYFGESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLP 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ I +L N R+ + N+ L L ++
Sbjct: 214 ENHIRLML--NDFTREYKKNLVEAEGLYLNKINY 245
>gi|256087148|ref|XP_002579738.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644398|emb|CCD60867.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 413
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 123/289 (42%), Gaps = 57/289 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKAL----EKTRLLVADKKESHYSRCGR 146
+R A+ +MY G +YG + PT+E E+ KAL + L + K H+ R +
Sbjct: 37 RRNNAILLMYSGWGYYGMQR-CPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASK 95
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDK VS++GQV ++ Q++++ D + LN LP++IRV+
Sbjct: 96 TDKSVSALGQVCSM-----------------------QLKEDTDLLSKLNNSLPENIRVL 132
Query: 207 GWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK---K 246
FS+ SC R Y Y W L + + + K
Sbjct: 133 DIIRVTRGFSSYSSCTHRIYDYLLPTFALSPATSSLNDSTCWTYRLTVEQITQVNRLLEK 192
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+ G H+F NF + R++ S E P ++ E +Q I+I G +F+ HQ+R M
Sbjct: 193 YKGTHNFYNFTSGRLVTDRSCSRYIISAECMPTFLLGE-HQYTIIRIAGQSFMLHQIRKM 251
Query: 307 VAVLFMIGQGLESIDVIESLLDTN--GIPRKPQYNMAPEIPLVLQSCDF 353
+ + + +G + V + + IP+ AP + L+L DF
Sbjct: 252 IGLALAVLRGYATEAVFDIVFSKARIDIPK------APGLGLMLNQVDF 294
>gi|16804636|ref|NP_466121.1| tRNA pseudouridine synthase A [Listeria monocytogenes EGD-e]
gi|254829047|ref|ZP_05233734.1| truA [Listeria monocytogenes FSL N3-165]
gi|254912843|ref|ZP_05262855.1| tRNA pseudouridine synthase A [Listeria monocytogenes J2818]
gi|254937223|ref|ZP_05268920.1| truA [Listeria monocytogenes F6900]
gi|255029029|ref|ZP_05300980.1| tRNA pseudouridine synthase A [Listeria monocytogenes LO28]
gi|284800516|ref|YP_003412381.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5578]
gi|284993702|ref|YP_003415470.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5923]
gi|386044906|ref|YP_005963711.1| tRNA pseudouridine synthase A [Listeria monocytogenes 10403S]
gi|386048328|ref|YP_005966660.1| tRNA pseudouridine synthase A [Listeria monocytogenes J0161]
gi|386051570|ref|YP_005969561.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-561]
gi|386054788|ref|YP_005972346.1| tRNA pseudouridine synthase A [Listeria monocytogenes Finland 1998]
gi|404285094|ref|YP_006685991.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2372]
gi|404411848|ref|YP_006697436.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC5850]
gi|404414674|ref|YP_006700261.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC7179]
gi|405759651|ref|YP_006688927.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2479]
gi|24212550|sp|Q8Y457.1|TRUA_LISMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|16412086|emb|CAD00676.1| truA [Listeria monocytogenes EGD-e]
gi|258601456|gb|EEW14781.1| truA [Listeria monocytogenes FSL N3-165]
gi|258609828|gb|EEW22436.1| truA [Listeria monocytogenes F6900]
gi|284056078|gb|ADB67019.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5578]
gi|284059169|gb|ADB70108.1| tRNA pseudouridine synthase A [Listeria monocytogenes 08-5923]
gi|293590841|gb|EFF99175.1| tRNA pseudouridine synthase A [Listeria monocytogenes J2818]
gi|345535319|gb|AEO04760.1| tRNA pseudouridine synthase A [Listeria monocytogenes J0161]
gi|345538140|gb|AEO07580.1| tRNA pseudouridine synthase A [Listeria monocytogenes 10403S]
gi|346425416|gb|AEO26941.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL R2-561]
gi|346647439|gb|AEO40064.1| tRNA pseudouridine synthase A [Listeria monocytogenes Finland 1998]
gi|404231674|emb|CBY53078.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC5850]
gi|404234596|emb|CBY55999.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2372]
gi|404237533|emb|CBY58935.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2479]
gi|404240373|emb|CBY61774.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC7179]
Length = 248
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 122/280 (43%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALTK----MHKGKTVRVTASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQVMTPFDISFLTVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L++S M+ A K+ +GEHDF +
Sbjct: 97 PDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 G-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G + D+ E+LL + +K AP L L D++
Sbjct: 211 GRISPDDISEALLARD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|379748981|ref|YP_005339802.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare ATCC
13950]
gi|378801345|gb|AFC45481.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare ATCC
13950]
Length = 251
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 95/230 (41%), Gaps = 39/230 (16%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNA-SMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV + ++ NA S V E + + +R L R LP D
Sbjct: 22 AGRTDAGVHATGQVAHV----DVPAAALPNAYSRAPHVGEAEF---LPLLRRLGRFLPTD 74
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK 245
+RV+ AP F ARFS + R Y Y W L++ AM SA +
Sbjct: 75 VRVVDIVRAPAGFDARFSALRRHYVYRLSTAPWGVDPQQVRYVTAWPRPLDVEAMASASR 134
Query: 246 KFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
+G HDF FC+ +A + + +R + EG+ + A ++ AF W V
Sbjct: 135 DLLGLHDFAAFCRHRENATTIRDLQR---------LEWTREGDLITA-RVSADAFCWSMV 184
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
R +V L +G+ + LL R Y AP L L D+
Sbjct: 185 RSLVGALLAVGEHRRPVSWCRELLSATA--RSSDYATAPAHGLTLVGVDY 232
>gi|372268713|ref|ZP_09504761.1| tRNA pseudouridine synthase A [Alteromonas sp. S89]
Length = 294
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 108/251 (43%), Gaps = 48/251 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R GF + TV+ + KAL K VA + + GRTD GV +
Sbjct: 27 IALGVEYCGTRLRGFQKQKHDPLTVQETLEKALSK----VAAEPVTLVC-AGRTDAGVHA 81
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV+ +T + ++ +V+ +N +P D+RV P P
Sbjct: 82 SSQVVHF-----------------DTTAQRPLKA---WVQGVNTQMPFDVRVHWAQPVPA 121
Query: 214 DFSARFSCISREYKYFF---------------WRE-NLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS SR Y+Y W E L+L AM + VGEHDF +F
Sbjct: 122 QFHARFSARSRSYRYLIHSAPTRSAQAASEVTWTERTLDLEAMREGARHLVGEHDFSSF- 180
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+ + R +T +I QL +++ +AFL H VR + VL +G+G
Sbjct: 181 RAAQCQARSPVRRLTRLDIG------RVGQLIVLEVSATAFLHHMVRNIAGVLMAVGRGD 234
Query: 318 ESIDVIESLLD 328
S + + +L+
Sbjct: 235 RSPEWVRQVLE 245
>gi|376242192|ref|YP_005133044.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae CDCE
8392]
gi|372105434|gb|AEX71496.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae CDCE
8392]
Length = 295
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 38/252 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + + K +E T LV ++ + GRTD GV +
Sbjct: 15 IRLDLAYDGTDFHGWARQGDSD---LRTVQKIIEDTLKLVL-QRPIDLTVAGRTDAGVHA 70
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV ++ S+ D +R L R++P D+R+ S P
Sbjct: 71 TGQVAHF----DVDPAALETRSIAG--------DPARLIRRLARLMPDDVRIHNMSFVPA 118
Query: 214 DFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS + R Y Y W ++++SAM++A +G HDF F
Sbjct: 119 EFDARFSALRRHYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAF 178
Query: 257 CKM-DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK + A+ + T ++S + + QL + AF W VR +V ++G+
Sbjct: 179 CKYREGASTIRDLQEFTWHDVS----TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGE 234
Query: 316 GLESIDVIESLL 327
G + E LL
Sbjct: 235 GKRADGFTEHLL 246
>gi|384253414|gb|EIE26889.1| pseudouridine synthase, partial [Coccomyxa subellipsoidea C-169]
Length = 314
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 120/291 (41%), Gaps = 54/291 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL----VADKKESHYSRCGR 146
KR VA+ V + G + G + + T+E E+ A+ K + D + ++R R
Sbjct: 2 KRKVAVFVAFVGAGYSGMQHNPGCK-TIEGELGSAMNKAGAISDENAGDFSKVQWNRAAR 60
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ G V+++ + D V +N LP+ IRV+
Sbjct: 61 TDKGVSAAGNVVSLKMMIAFP----------------------DTVERINSHLPEQIRVL 98
Query: 207 GWSPAPTDFSARFSCISREYKYFF------------------WRENLNLSAMESAG---- 244
G++ F AR C R Y+Y SA + A
Sbjct: 99 GFTRVTNSFDARKHCDRRRYEYILPAFITIDGAAAAAAAEAAGSRQCRFSAEQQARLNEV 158
Query: 245 -KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
F G H F N+ A+ KR++ SF+ + ++ EG Q + + G +F+ HQ+
Sbjct: 159 LGAFEGTHSFHNYTVRVPASDPAAKRYILSFKCAGT-MNLEGQQWVRMVVVGQSFMLHQI 217
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
R +V + +G+ + D I LD + P MAPE+ L L C F+
Sbjct: 218 RKLVGTAVAVMRGVATPDAITLALDPARVVVTP---MAPELGLFLDECVFE 265
>gi|359798860|ref|ZP_09301429.1| tRNA pseudouridine synthase A [Achromobacter arsenitoxydans SY8]
gi|359362998|gb|EHK64726.1| tRNA pseudouridine synthase A [Achromobacter arsenitoxydans SY8]
Length = 269
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 124/295 (42%), Gaps = 57/295 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VAL + Y G + G+ + + + TV+ + AL + VAD + + GRTD GV
Sbjct: 4 VALGLAYDGSVWQGWQTQPHRQ-TVQDTLESAL-ASFCGVADPVPTICA--GRTDTGVHG 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV+ + +T + ++E +VR +N LP + V P
Sbjct: 60 AMQVVHL-----------------DTALDRRMES---WVRGVNAFLPPSVSVQWAQPVSD 99
Query: 214 DFSARFSCISREYKYFFWR----------------ENLNLSAMESAGKKFVGEHDFRNFC 257
+F ARFS +R Y Y WR + L++ AM +A K VGEHDF +F
Sbjct: 100 EFHARFSARARTYVYLLWRGRVRPALWAGRAGWCFQPLDVDAMRAAAKALVGEHDFSSFR 159
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
H RH+ S +I E ++ +AFL H VR ++ L +GQG
Sbjct: 160 SSQCQAKHPV-RHMHSLDIE------ERGPFLVFTLKANAFLHHMVRNIMGALLQVGQGR 212
Query: 318 ESIDVIESLLDTN----GIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDL 368
ES+D + LL G P AP+ L L + D+ LD G L
Sbjct: 213 ESVDWMAQLLSWRDRKLGAP-----TFAPD-GLYLSAIDYPEAFGLLELDGGSSL 261
>gi|256087146|ref|XP_002579737.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644397|emb|CCD60866.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 428
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 123/289 (42%), Gaps = 57/289 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKAL----EKTRLLVADKKESHYSRCGR 146
+R A+ +MY G +YG + PT+E E+ KAL + L + K H+ R +
Sbjct: 52 RRNNAILLMYSGWGYYGMQR-CPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASK 110
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDK VS++GQV ++ Q++++ D + LN LP++IRV+
Sbjct: 111 TDKSVSALGQVCSM-----------------------QLKEDTDLLSKLNNSLPENIRVL 147
Query: 207 GWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK---K 246
FS+ SC R Y Y W L + + + K
Sbjct: 148 DIIRVTRGFSSYSSCTHRIYDYLLPTFALSPATSSLNDSTCWTYRLTVEQITQVNRLLEK 207
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+ G H+F NF + R++ S E P ++ E +Q I+I G +F+ HQ+R M
Sbjct: 208 YKGTHNFYNFTSGRLVTDRSCSRYIISAECMPTFLLGE-HQYTIIRIAGQSFMLHQIRKM 266
Query: 307 VAVLFMIGQGLESIDVIESLLDTN--GIPRKPQYNMAPEIPLVLQSCDF 353
+ + + +G + V + + IP+ AP + L+L DF
Sbjct: 267 IGLALAVLRGYATEAVFDIVFSKARIDIPK------APGLGLMLNQVDF 309
>gi|225872353|ref|YP_002753808.1| tRNA pseudouridine synthase A [Acidobacterium capsulatum ATCC
51196]
gi|225793375|gb|ACO33465.1| tRNA pseudouridine synthase A [Acidobacterium capsulatum ATCC
51196]
Length = 254
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 103/245 (42%), Gaps = 46/245 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G + G+ + PT++ E+ A+E+ + ++ S GRTD GV ++G
Sbjct: 7 LTLAYDGTDYRGWQVQPEL-PTIQGELAAAVER---ITGERVLPQGS--GRTDAGVHALG 60
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + L++ I N + R LNR LP IRV+G P DF
Sbjct: 61 QVASFVLKAPIPAENLH--------------------RALNRTLPAAIRVLGAESMPEDF 100
Query: 216 SARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKM 259
AR S S+ Y+Y +R L++ AM A FVGEHDFR+F
Sbjct: 101 HARHSARSKWYEYRIFRGEVCPPWTARYVYALHWPLDVEAMRRAAAAFVGEHDFRSFAAS 160
Query: 260 DAANVHNYKRHVTSFEISPCYIS--FEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
D + + S E + L ++ G+ FL H VR +V MIG G
Sbjct: 161 DPDVAARGSEDAEESHVRTIFASGWAEEDDLLIYRVHGNGFLHHMVRNLVGT--MIGVGR 218
Query: 318 ESIDV 322
D
Sbjct: 219 RQFDA 223
>gi|376289712|ref|YP_005161959.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae C7
(beta)]
gi|372103108|gb|AEX66705.1| tRNA pseudouridine synthase A [Corynebacterium diphtheriae C7
(beta)]
Length = 288
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 109/252 (43%), Gaps = 38/252 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G+ + + K +E T LV ++ + GRTD GV +
Sbjct: 8 IRLDLAYDGTDFHGWARQGDSD---LRTVQKIIEDTLKLVL-QRPIDLTVAGRTDAGVHA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV ++ S+ D +R L R++P D+R+ S P
Sbjct: 64 TGQVAHF----DVDPAALETRSIAG--------DPARLIRRLARLMPADVRIHNMSFVPA 111
Query: 214 DFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS + R Y Y W ++++SAM++A +G HDF F
Sbjct: 112 EFDARFSALRRRYIYRVTTHPRGALPTRARDTAHWPRSVDISAMQAAADALIGMHDFAAF 171
Query: 257 CKM-DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK + A+ + T ++S + + QL + AF W VR +V ++G+
Sbjct: 172 CKYREGASTIRDLQEFTWHDVS----TPQEPQLYEAHVTADAFCWSMVRSLVGACLVVGE 227
Query: 316 GLESIDVIESLL 327
G + E LL
Sbjct: 228 GKRADGFTEHLL 239
>gi|226184487|dbj|BAH32591.1| tRNA pseudouridine synthase TruA [Rhodococcus erythropolis PR4]
Length = 294
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 115/277 (41%), Gaps = 54/277 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A ++ TV EI + +L ++ + GRTD GV + G
Sbjct: 25 LDISYDGTDFSGWARQTDLR-TVCGEI-----EDKLGTVLRQPVQLTVAGRTDAGVHATG 78
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + E +D VR L R LPKD+RV S P DF
Sbjct: 79 QVAHV-----------------DVPGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDF 121
Query: 216 SARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS I R Y+Y + + L+L+AM+ A + +G H+F FCK
Sbjct: 122 DARFSAIRRYYEYRVTNAAFGVEPLRARDTVSYPKPLDLAAMQEASNRLLGLHNFAAFCK 181
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A V +R F+ + EG A + AF W VR +V + +G+G
Sbjct: 182 RREGATTVRELQR----FDWAQ-----EGTVFTAY-VNADAFCWSMVRSLVGAVLSVGEG 231
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ D + LLD R +AP L L D+
Sbjct: 232 RRTADWVAGLLDET--LRSSSILVAPAHGLSLVRVDY 266
>gi|422340250|ref|ZP_16421203.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355369901|gb|EHG17291.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 247
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 118/277 (42%), Gaps = 48/277 (17%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + ++ Y G R+YGF N + TV+ EI K L + K+E + GRTD+G
Sbjct: 5 RKNIKIEFRYDGSRYYGFQRQPN-KITVQGEIEKILR-----IVTKEEINLISAGRTDRG 58
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y SNI IE Y +L R LP DI ++
Sbjct: 59 VHANHQVSNFYTSSNI-----------------PIEK---YKYLLTRALPNDIDILSVEE 98
Query: 211 APTDFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNF 256
+F+AR + REY Y F +E + +E F+G HDF+NF
Sbjct: 99 VDENFNARHNAKMREYVYIISWKKNPFEARHCKFVKEKIVAEKLEKIFSDFIGVHDFKNF 158
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + VT EI + + G+ I I+GSAFL QVR MV + I G
Sbjct: 159 RLSDCVS------KVTIREIYQIEVKYFGDSKIKIYIKGSAFLKSQVRIMVGTVLEIYYG 212
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ I+ +L N R+ + N+ L L ++
Sbjct: 213 RLPENHIKLML--NDFTREYKKNLVEAEGLYLNKIEY 247
>gi|297201758|ref|ZP_06919155.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083]
gi|197710867|gb|EDY54901.1| tRNA pseudouridine synthase A [Streptomyces sviceus ATCC 29083]
Length = 289
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 105/256 (41%), Gaps = 47/256 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY--SRCGRTDKGV 151
V L + Y G F G+A TV+ EI AL V K+ Y + GRTD GV
Sbjct: 12 VRLDLSYDGSDFSGWAKQAGGRRTVQGEIEDALRT----VTRSKDVTYELTVAGRTDAGV 67
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV + L + + + ++ L LPKD+RV A
Sbjct: 68 HARGQVAHVDLPEGLWAEHRDK-----------------LLKRLAGRLPKDVRVWSLREA 110
Query: 212 PTDFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFR 254
P F+ARF+ + R Y Y W + L+++ M++A K VGEHDF
Sbjct: 111 PAGFNARFAALWRRYVYRVGDQPGGVDPLLRNHVLWHDWELDVAVMDAAAKSLVGEHDFA 170
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+ K + T EI + + + I++R AF +QVR MV L +G
Sbjct: 171 AYAK-------RREGATTIREILDFGVRRRADGVVEIEVRADAFCHNQVRSMVGALLFVG 223
Query: 315 QGLESIDVIESLLDTN 330
G ++ +LD
Sbjct: 224 DGHRGVEWPRKVLDAG 239
>gi|400405644|ref|YP_006588503.1| pseudouridylate synthase I [secondary endosymbiont of Ctenarytaina
eucalypti]
gi|400364007|gb|AFP85075.1| pseudouridylate synthase I [secondary endosymbiont of Ctenarytaina
eucalypti]
Length = 261
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 113/251 (45%), Gaps = 51/251 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL + Y G +YG+ + P+++ + +AL VA++ + YS GRTD GV +
Sbjct: 3 LALGIEYDGSAYYGWQRQKKV-PSIQDCLERALST----VANEAIAVYS-AGRTDAGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ + + C + +A + R +N LP DI V +P P
Sbjct: 57 TGQVVHF----DTRVCRSEDA----------------WTRGVNANLPADIAVRWMAPMPE 96
Query: 214 DFSARFSCISREYKYFFWRENL----------------NLSAMESAGKKFVGEHDFRNFC 257
DF ARFS I+R Y+Y + +L + S+M AG+ +GEHDF +F
Sbjct: 97 DFHARFSAIARRYRYIIYNHHLRPALLVRGMTHYYRPIDASSMARAGQCLLGEHDFTSFR 156
Query: 258 KMDAANVHNYKR-HVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ + Y+ H Y+ + I+ +AF++H VR +V L +G G
Sbjct: 157 ALQCQSRTAYRNVHYLHVNRKGLYV--------VVDIKANAFIYHMVRNIVGSLLEVGCG 208
Query: 317 LESIDVIESLL 327
+ I LL
Sbjct: 209 NQPEGWIAELL 219
>gi|383320001|ref|YP_005380842.1| tRNA pseudouridylate synthase I [Methanocella conradii HZ254]
gi|379321371|gb|AFD00324.1| tRNA pseudouridylate synthase I [Methanocella conradii HZ254]
Length = 269
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 107/243 (44%), Gaps = 38/243 (15%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
ALK+ Y G F G + TVE E+ K L + ++ + + S GRTD GV ++
Sbjct: 6 ALKLAYIGTDFSGSQAQPGKR-TVEGELKKGLIEKGII---DERTRVSFSGRTDAGVHAL 61
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQV++ + + E +E R++N V+PKD+ V + P D
Sbjct: 62 GQVVSF-----------------KALDERLVEP-----RIINSVMPKDLWVYASASVPDD 99
Query: 215 FSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSF 274
F R SR Y+Y + ++ + K F+G HDF NF ++ N R + +
Sbjct: 100 FDPRRDATSRTYRYVLYAPDVVERRIVECSKLFIGTHDFTNFSSVEPGK--NPVRTIKNI 157
Query: 275 EISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN---- 330
++ + L I + +FLW+ VR MV L ++G IE +L +
Sbjct: 158 SVT------KRGDLYIIDVEADSFLWNMVRKMVTGLRLVGSNKRPARWIEQMLRPDEYRE 211
Query: 331 GIP 333
GIP
Sbjct: 212 GIP 214
>gi|111220576|ref|YP_711370.1| tRNA pseudouridine synthase A [Frankia alni ACN14a]
gi|111148108|emb|CAJ59776.1| tRNA pseudouridine synthase A (Pseudouridylate synthase I)
(Pseudouridine synthase I) (Uracil hydrolyase) [Frankia
alni ACN14a]
Length = 288
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 104/266 (39%), Gaps = 55/266 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A TV+ ++ AL + L A + + GRTD GV + G
Sbjct: 24 LDIAYDGTPFAGWARQPGQR-TVQGDVEDALIRVARLAAVR----LTVAGRTDSGVHAAG 78
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + L +++ R LN VL + +RV G +PAP F
Sbjct: 79 QVAHVDLPTDVPLGG--------------------LARRLNGVLDRSVRVTGLAPAPAGF 118
Query: 216 SARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS +SR Y Y W L++ AM SA VGEHDF FC+
Sbjct: 119 DARFSALSRRYVYRITDAPFGAEPLRRFDTLAWPRPLDVPAMASAALLLVGEHDFAAFCR 178
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A V R + + + + AF VR +V L +G+G
Sbjct: 179 RREGATTVRTLLR---------LDVLRRPDGVVVADVEADAFCHSMVRALVGALLAVGEG 229
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAP 342
++L G+ R P +AP
Sbjct: 230 RRPPQWPAAVL-RRGL-RDPAVTVAP 253
>gi|225388793|ref|ZP_03758517.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme
DSM 15981]
gi|225045068|gb|EEG55314.1| hypothetical protein CLOSTASPAR_02531 [Clostridium asparagiforme
DSM 15981]
Length = 250
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 118/276 (42%), Gaps = 54/276 (19%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G R+ G+ GN + T++ ++ L + L + E H S GRTD GV + GQV
Sbjct: 7 LQYDGTRYDGWQRQGNTDRTIQGKLEAVLGR---LAEETLEVHGS--GRTDGGVHARGQV 61
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
+L+ Q + E+ Y LNR LP+DI V+ + AP F +
Sbjct: 62 ANFHLK-----------------QAREPEEIRAY---LNRYLPEDICVLELTAAPERFHS 101
Query: 218 RFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFC---K 258
R + + Y+Y W + L++ ME A +G HDF++FC K
Sbjct: 102 RLNACRKTYRYQIWMDGKTDVFQRDYFYGLGKQLDIGQMERAAGTLLGTHDFKSFCGNKK 161
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
M + V R +T+ + I + A+ + G+ FL VR + L +G G
Sbjct: 162 MKKSTV----RTITAIRL----IRLCDGKALAVDVTGNGFLQQMVRILAGTLIEVGLGKR 213
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
D +E++L+ R AP L L + ++
Sbjct: 214 EADSLEAVLELK--ERSAAGFTAPPEGLCLMNVQYE 247
>gi|195113035|ref|XP_002001075.1| GI22173 [Drosophila mojavensis]
gi|193917669|gb|EDW16536.1| GI22173 [Drosophila mojavensis]
Length = 401
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 136/337 (40%), Gaps = 50/337 (14%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGRTDKG 150
A+ + Y G +YG + M+ T+E E+FKA+ K + + D E + + R RTDKG
Sbjct: 73 AILLSYCGANYYGMQRNPGMQ-TIEEELFKAMLKHKWITEDSFEQVQIACFQRAARTDKG 131
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
VS+ QV ++ ++ +E+D + N+ LP+ IR+ G
Sbjct: 132 VSAARQVCSV-----------------------KLPEELD-LEAFNKDLPEQIRIFGVER 167
Query: 211 APTDFSARFSCISREYKYFF----------------WRENL-NLSAMESAGKKFVGEHDF 253
F+A+ C +R Y Y +R + L + + K + G +F
Sbjct: 168 VTKGFNAKDQCNARTYTYTLPTIAFAAFDDQHDQETYRIPIERLEKVSATLKLYEGTKNF 227
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
NF + KR + SF S ++S + + +K++G +F+ HQ+R MV + I
Sbjct: 228 HNFTSKKNFLDPSAKRFIMSFTCSTPFLSPQSVEFVTLKVKGQSFMLHQIRKMVGLAIAI 287
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLR 373
+G + +E L + MAP + LVL + ++ D H
Sbjct: 288 VRGNTTTATLERALTEERL----DLPMAPGLGLVLDTVHYERYNDRYGNDGIHKPLTWAE 343
Query: 374 NECQVYQLQAAIFHEALLNCLPLANGLEIGSSLIHLH 410
E QV Q + + + S +H H
Sbjct: 344 QEEQVTQFVEKYIYSNIYKTEAEQRNMLDWLSTLHFH 380
>gi|348513719|ref|XP_003444389.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Oreochromis niloticus]
Length = 421
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/288 (24%), Positives = 126/288 (43%), Gaps = 52/288 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVADK----KESHYSRC 144
K+ V L ++Y G+ +YG + GN + T+E ++ AL K+ + + K+ + RC
Sbjct: 79 KKKVVLLMVYSGKGYYGMQRNPGNSQFRTIEDDLVAALIKSGCIPENHGDEMKKMSFQRC 138
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ +R I+D I+ + N LP I+
Sbjct: 139 ARTDKGVSAAGQVVSLKVR--------------------LIDDIIEKI---NEHLPPQIK 175
Query: 205 VIGWSPAPTDFSARFSCISREYKYF------------------FWRENLNLSAMESAGKK 246
V+G F+++ +C +R Y Y F E L +
Sbjct: 176 VLGLKRVTQGFNSKNNCDARTYSYMLPTVAFSPKDYDTGNIAAFRLEPETLQKVNRLFAL 235
Query: 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+ G H+F NF A + + +R++T +I + I +RG +F+ HQ+R M
Sbjct: 236 YKGTHNFHNFTSQKAPSDPSARRYITEMSCGEPFIR-RNYEFAVITVRGQSFMLHQIRKM 294
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ ++ + +G +V+E + AP + L+L+ FD
Sbjct: 295 IGLVIAVVKGYAKEEVMERSWGQEKV----DVPKAPGLGLILERVHFD 338
>gi|254302141|ref|ZP_04969499.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322333|gb|EDK87583.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 247
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 103/240 (42%), Gaps = 46/240 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + ++ Y G R+YGF N + TV+ EI K L + K+E + GRTD+G
Sbjct: 5 RKNIKIEFRYDGSRYYGFQRQPN-KITVQGEIEKVLR-----IVTKEEINLISAGRTDRG 58
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y SNI IE Y +L R LP DI ++
Sbjct: 59 VHANHQVSNFYTSSNI-----------------PIEK---YKYLLTRALPNDIDILSVEE 98
Query: 211 APTDFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNF 256
+F+AR + REY Y F +E + +E F+G HDF+NF
Sbjct: 99 VDENFNARHNAKMREYVYIISWEKNPFEARHCKFVKEKIVAEKLEKIFSDFIGVHDFKNF 158
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + VT EI + + G+ I I+GSAFL QVR MV + I G
Sbjct: 159 RLSDCVS------KVTIREIYQIEVKYFGDSKIKIYIKGSAFLKSQVRIMVGTVLEIYYG 212
>gi|402299426|ref|ZP_10819037.1| tRNA pseudouridine synthase A [Bacillus alcalophilus ATCC 27647]
gi|401725464|gb|EJS98749.1| tRNA pseudouridine synthase A [Bacillus alcalophilus ATCC 27647]
Length = 251
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 56/281 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
R +A KV Y G F G+ ++P T++ EI +L+K + +E GRTD
Sbjct: 2 RKMACKVAYEGTYFAGY----QVQPGKRTIQGEIEASLKK----IHKGEELRIHSSGRTD 53
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
V + GQV S+ V + + LN +LP DIR+I
Sbjct: 54 SLVHATGQVFHF------------ETSLAIPVSR--------WAKALNALLPADIRIIEA 93
Query: 209 SPAPTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHD 252
DF AR+S IS++Y+Y + + E L++ A++ A + +G+HD
Sbjct: 94 VEVSKDFHARYSAISKQYRYRILLTKEGDLFRRNHCYHFTEMLDIEAIKEAAQHILGKHD 153
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
F FC + + + + R VT E+ G++L I + G FL++ VR MV L
Sbjct: 154 FSAFCAANTSVI-DKIRTVTRLELQHV-----GDELLFI-VEGDGFLYNMVRIMVGTLLE 206
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G G ++++++ G R AP L L ++
Sbjct: 207 VGTGKRDPHELQAIIE--GCDRTKAGKTAPGHGLYLHQVNY 245
>gi|311740028|ref|ZP_07713862.1| tRNA pseudouridine synthase A [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305101|gb|EFQ81170.1| tRNA pseudouridine synthase A [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 297
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 114/277 (41%), Gaps = 43/277 (15%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F+G+A TV+ LE+ ++A + E + GRTD GV + G
Sbjct: 25 LDLAYDGTDFHGWAKQKGGLRTVQG----VLEEKLAMIA-RTEVPLTVAGRTDAGVHARG 79
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + + + G+ VR L ++LP+D+RV G AP F
Sbjct: 80 QVAHVDVPTEMLAQRSVAGEPGK------------LVRRLAKLLPEDVRVHGCEFAPAGF 127
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y Y W + +++ AM+ A VG HDF FCK
Sbjct: 128 DARFSALRRHYVYRITTNPRGALPTRARDTAEWIKPVDIDAMQEAATALVGLHDFAAFCK 187
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+A + + +P E +L ++ AF W VR +V +G+G
Sbjct: 188 AKPNATTIRELQEFSWRDASTP-----EEPELFEARVSADAFCWSMVRSLVGCCLRVGEG 242
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
D +LL R +AP L L + D+
Sbjct: 243 RRDADFAAALLQETK--RSSSIPVAPAKGLSLVAVDY 277
>gi|229489482|ref|ZP_04383345.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121]
gi|229323579|gb|EEN89337.1| tRNA pseudouridine synthase A [Rhodococcus erythropolis SK121]
Length = 294
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 113/280 (40%), Gaps = 60/280 (21%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A ++ TV EI + +L ++ + GRTD GV + G
Sbjct: 25 LDISYDGTDFSGWARQTDLR-TVCGEI-----EDKLGTVLRRPVQLTVAGRTDAGVHATG 78
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + E +D VR L R LPKD+RV S P DF
Sbjct: 79 QVAHV-----------------DVPGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDF 121
Query: 216 SARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y + + L+L AM+ A + +G H+F FCK
Sbjct: 122 DARFSAMRRYYEYRVTNAAFGVEPLRARDTVSYPKPLDLGAMQEASNRLLGLHNFAAFCK 181
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAI---KIRGSAFLWHQVRCMVAVLFMI 313
A V +R F+ Q+ + + AF W VR +V + +
Sbjct: 182 RREGATTVRELQR-------------FDWTQVGTVFTAYVNADAFCWSMVRSLVGAVLSV 228
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G+G + D + LLD R +AP L L D+
Sbjct: 229 GEGRRTADWVAGLLDETS--RSSSILVAPAHGLSLVRVDY 266
>gi|225432191|ref|XP_002275097.1| PREDICTED: tRNA pseudouridine synthase A 1-like [Vitis vinifera]
Length = 336
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 130/303 (42%), Gaps = 48/303 (15%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ + PT++ + KAL TR ++++ + RTD GV + G
Sbjct: 59 LVIAYEGTRYSGWQYQQS-PPTIQCIVEKAL--TRATKLEREDLYLVGASRTDTGVHAWG 115
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N + +A+ LN +LP DIRV SPA +F
Sbjct: 116 QVAHFLTPFNYDGLESIHAA-------------------LNGLLPPDIRVREISPAVPEF 156
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
ARFS S+ Y Y + + LN AM A K F G+HDF F
Sbjct: 157 HARFSVKSKIYHYKIYNDAVMDPFLRHYVYHSVYKLNTLAMREAAKHFTGKHDFSAFVNA 216
Query: 260 DAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ N +++ F+++ E L +++ GS FL+ QVR MVA+L IG+
Sbjct: 217 SHNDRSPNPVKNIFRFDVN------EMGALLQLEVEGSGFLYRQVRNMVALLLQIGREAI 270
Query: 319 SIDVIESLLDTNGIPRKPQYNM-APEIPLVLQSCDFD--GLKFTCSLDAGHDLRLHLRNE 375
+++ +L T +Y + AP L L S ++ L+ A R H +
Sbjct: 271 PPNIVPWILATRDRKELAKYALSAPPHGLCLMSVKYNEEHLQLPSGCPATSHGRHHTVRK 330
Query: 376 CQV 378
C++
Sbjct: 331 CKL 333
>gi|336433571|ref|ZP_08613388.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016007|gb|EGN45804.1| tRNA pseudouridine synthase A [Lachnospiraceae bacterium 2_1_58FAA]
Length = 244
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 119/278 (42%), Gaps = 51/278 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R L + Y G R+ G+ N + TV+ + +A +T + + S GRTD GV
Sbjct: 2 RTYKLTIAYDGSRYQGWQRQSNTDKTVQGLLEQAASETAGYPLEVQGS-----GRTDGGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQ ++ LR ++E ++++ +NR+LP DIRVI
Sbjct: 57 HAKGQTASVILRGKVQES--------------------EFLQNMNRLLPLDIRVIEMELV 96
Query: 212 PTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRN 255
F AR S + + Y+Y + + + LN+ AM+ A +G +DF
Sbjct: 97 KNGFHARLSAVGKCYEYWIDMREKPDVFMRKYTYHYPKELNIEAMQRAADDLIGRYDF-- 154
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
AA + T I + +G++L I+ RGS F++H VR + L +G
Sbjct: 155 -----AAFTDKKEEKSTIRTIYAIIVEVQGDKL-RIEYRGSGFMYHMVRILTGTLLEVGD 208
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G + + +++ L G R +AP L L+ +
Sbjct: 209 GRRTPESVKAAL--AGRDRADAGFLAPARGLTLKEVYY 244
>gi|294141648|ref|YP_003557626.1| tRNA pseudouridine synthase A [Shewanella violacea DSS12]
gi|293328117|dbj|BAJ02848.1| tRNA pseudouridine synthase A [Shewanella violacea DSS12]
Length = 275
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 112/250 (44%), Gaps = 49/250 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VAL + Y G ++YG+ ++ TV++++ +AL K VA++ + + GRTD GV
Sbjct: 17 VALGIEYDGSKYYGWQRQLEVD-TVQAQLERALSK----VANQPITVHC-AGRTDAGVHG 70
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ + I E + +N LP DI V
Sbjct: 71 TGQVVHF--------------------ETTAIRKESAWTLGVNVNLPDDIAVKWVKLVDD 110
Query: 214 DFSARFSCISREYKYFF----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
DF ARFS +R Y+Y +R L+ + M A + FVGEHDF +F
Sbjct: 111 DFHARFSATARRYRYLIYNYHLRPGILRSGVSHYRGQLDENKMHQAAQHFVGEHDFTSFR 170
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+ + + RHV ++ +G LC + I+ +AFL H VR +V L IGQG
Sbjct: 171 ALHCQSKSPF-RHVHEVNVTR-----QGMYLC-VDIKANAFLHHMVRNIVGSLIEIGQGH 223
Query: 318 ESIDVIESLL 327
+ D I LL
Sbjct: 224 QQGDWIVELL 233
>gi|297736816|emb|CBI26017.3| unnamed protein product [Vitis vinifera]
Length = 326
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 130/303 (42%), Gaps = 48/303 (15%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ + PT++ + KAL TR ++++ + RTD GV + G
Sbjct: 49 LVIAYEGTRYSGWQYQQS-PPTIQCIVEKAL--TRATKLEREDLYLVGASRTDTGVHAWG 105
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N + +A+ LN +LP DIRV SPA +F
Sbjct: 106 QVAHFLTPFNYDGLESIHAA-------------------LNGLLPPDIRVREISPAVPEF 146
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
ARFS S+ Y Y + + LN AM A K F G+HDF F
Sbjct: 147 HARFSVKSKIYHYKIYNDAVMDPFLRHYVYHSVYKLNTLAMREAAKHFTGKHDFSAFVNA 206
Query: 260 DAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ N +++ F+++ E L +++ GS FL+ QVR MVA+L IG+
Sbjct: 207 SHNDRSPNPVKNIFRFDVN------EMGALLQLEVEGSGFLYRQVRNMVALLLQIGREAI 260
Query: 319 SIDVIESLLDTNGIPRKPQYNM-APEIPLVLQSCDFD--GLKFTCSLDAGHDLRLHLRNE 375
+++ +L T +Y + AP L L S ++ L+ A R H +
Sbjct: 261 PPNIVPWILATRDRKELAKYALSAPPHGLCLMSVKYNEEHLQLPSGCPATSHGRHHTVRK 320
Query: 376 CQV 378
C++
Sbjct: 321 CKL 323
>gi|308233892|ref|ZP_07664629.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829]
gi|328943600|ref|ZP_08241065.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829]
gi|327491569|gb|EGF23343.1| tRNA pseudouridine synthase A [Atopobium vaginae DSM 15829]
Length = 311
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/264 (28%), Positives = 118/264 (44%), Gaps = 50/264 (18%)
Query: 90 FKRYVALKVM---YFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGR 146
F +VA V+ Y G F G+A+ +VE + +AL T L ++ + GR
Sbjct: 37 FDPFVATLVIRFGYVGTHFCGYAAQNESVRSVEGCLTRAL-STFL----RRNITLTCAGR 91
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TD GV + Q ++ + Q E + + L+ + P DI +
Sbjct: 92 TDAGVHAHAQYVSFPI-----------------TQSELGMSKHKIMSALSGLCPDDISIR 134
Query: 207 GWSPAPTDFSARFSCISREYKY---------------FFWRENLN---LSAMESAGKKFV 248
AP DFSARFS R Y Y +W +N+ + M +AG+
Sbjct: 135 TLYRAPLDFSARFSACERSYTYRIALGPLKPILTHEFVWWVKNIPHVCMDDMNAAGEYLA 194
Query: 249 GEHDFRNFCKMDAANVH-----NYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
GEH+F++FCK +A + + R +TS ++S YI G Q+ + I G+AFL + V
Sbjct: 195 GEHNFKSFCKASSAQLLEEQGLSLNRCLTSIKVSRDYIV--GEQILRLDITGNAFLHNMV 252
Query: 304 RCMVAVLFMIGQGLESIDVIESLL 327
R + A L +G+G D I+ +L
Sbjct: 253 RIITASLLEVGRGARQPDWIQDVL 276
>gi|255025629|ref|ZP_05297615.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J2-003]
Length = 248
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 109/252 (43%), Gaps = 48/252 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALTK----MHKGKTVRITASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQVMTPFDISFLTVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L++S M+ A K+ +GEHDF +
Sbjct: 97 PDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 GLESIDVIESLL 327
G S D I L
Sbjct: 211 GRISPDDISKAL 222
>gi|217966203|ref|YP_002351881.1| tRNA pseudouridine synthase A [Listeria monocytogenes HCC23]
gi|386009377|ref|YP_005927655.1| tRNA pseudouridine synthase A [Listeria monocytogenes L99]
gi|386027997|ref|YP_005948773.1| tRNA pseudouridylate synthase A [Listeria monocytogenes M7]
gi|254789639|sp|B8DB42.1|TRUA_LISMH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|217335473|gb|ACK41267.1| tRNA pseudouridine synthase A [Listeria monocytogenes HCC23]
gi|307572187|emb|CAR85366.1| tRNA pseudouridine synthase A [Listeria monocytogenes L99]
gi|336024578|gb|AEH93715.1| tRNA pseudouridylate synthase A [Listeria monocytogenes M7]
Length = 248
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 109/252 (43%), Gaps = 48/252 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALTK----MHKGKTVRITASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQVMTPFDISFLTVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L++S M+ A K+ +GEHDF +
Sbjct: 97 PDDFHARFGTVGKEYRYVVKRTKIFDPFSRDFALHYPYELDISKMKLASKRLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 GLESIDVIESLL 327
G S D I L
Sbjct: 211 GRISPDDISKAL 222
>gi|255324781|ref|ZP_05365895.1| tRNA pseudouridine synthase A [Corynebacterium tuberculostearicum
SK141]
gi|255298256|gb|EET77559.1| tRNA pseudouridine synthase A [Corynebacterium tuberculostearicum
SK141]
Length = 297
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 114/277 (41%), Gaps = 43/277 (15%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F+G+A TV+ LE+ ++A + E + GRTD GV + G
Sbjct: 25 LDLAYDGTDFHGWAKQKGGLRTVQG----VLEEKLAMIA-RTEVPLTVAGRTDAGVHARG 79
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + + + G+ VR L ++LP+D+RV G AP F
Sbjct: 80 QVAHVDVPTEMLAQRSVAGEPGK------------LVRRLAKLLPEDVRVHGCEFAPAGF 127
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y Y W + +++ AM+ A VG HDF FCK
Sbjct: 128 DARFSALRRHYVYRITTNPRGALPTRARDTAEWIKPVDIDAMQEAATALVGLHDFAAFCK 187
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+A + + +P E +L ++ AF W VR +V +G+G
Sbjct: 188 AKPNATTIRELQEFSWRDVSTP-----EEPELYEARVSADAFCWSMVRSLVGCCLRVGEG 242
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
D +LL R +AP L L + D+
Sbjct: 243 RRDTDFAAALLQETK--RSSSIPVAPAKGLSLVAVDY 277
>gi|254819223|ref|ZP_05224224.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare ATCC
13950]
gi|379756297|ref|YP_005344969.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare
MOTT-02]
gi|378806513|gb|AFC50648.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare
MOTT-02]
Length = 251
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 95/230 (41%), Gaps = 39/230 (16%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNA-SMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV + ++ NA S V E + + +R L R LP D
Sbjct: 22 AGRTDAGVHATGQVAHV----DVPAAALPNAYSRAPHVGEAEF---LPLLRRLGRFLPTD 74
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK 245
+RV+ AP F ARFS + R Y Y W L++ AM +A +
Sbjct: 75 VRVVDIVRAPAGFDARFSALRRHYVYRLSTAPWGVDPQQVRYVTAWPRPLDVEAMATASR 134
Query: 246 KFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
+G HDF FC+ +A + + +R + EG+ + A ++ AF W V
Sbjct: 135 DLLGLHDFAAFCRHRENATTIRDLQR---------LEWTREGDLITA-RVSADAFCWSMV 184
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
R +V L +G+ + LL R Y AP L L D+
Sbjct: 185 RSLVGALLAVGEHRRPVSWCRELLSATA--RSSDYATAPAHGLTLVGVDY 232
>gi|16801808|ref|NP_472076.1| tRNA pseudouridine synthase A [Listeria innocua Clip11262]
gi|422414125|ref|ZP_16491084.1| tRNA pseudouridine synthase A [Listeria innocua FSL S4-378]
gi|423101379|ref|ZP_17089083.1| tRNA pseudouridine synthase A [Listeria innocua ATCC 33091]
gi|24212565|sp|Q927P1.1|TRUA_LISIN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|16415283|emb|CAC97973.1| truA [Listeria innocua Clip11262]
gi|313616961|gb|EFR89587.1| tRNA pseudouridine synthase A [Listeria innocua FSL S4-378]
gi|370792165|gb|EHN60056.1| tRNA pseudouridine synthase A [Listeria innocua ATCC 33091]
Length = 248
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 123/280 (43%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G F+G+ N TV++EI KALEK + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFFGYQVQPNTR-TVQAEIEKALEK----MHKGKSVRITASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI + A
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQVMTPFDISFLTVEEA 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L+++ M+ A ++ +GEHDF +
Sbjct: 97 PADFHARFGTVGKEYRYVIKRTKIFDPFSRNFALHYPYELDIAKMKQASERLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E + I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDAETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 G-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G + D+ ++LL + +K AP L L D++
Sbjct: 211 GRISPDDITKALLAHD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|194899730|ref|XP_001979411.1| GG15313 [Drosophila erecta]
gi|190651114|gb|EDV48369.1| GG15313 [Drosophila erecta]
Length = 410
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 129/311 (41%), Gaps = 52/311 (16%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGR 146
++ A+ + Y G +YG + M+ T+E E+FKA+ K + + D E S + R R
Sbjct: 69 RKKSAILLSYCGANYYGMQRNPGMQ-TIEEELFKAMLKHKWITEDSFEQIQISCFQRAAR 127
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ QV ++ L ++ + N LP+ IR+
Sbjct: 128 TDKGVSAARQVCSVKLPEDLD------------------------LEAFNADLPQQIRLF 163
Query: 207 GWSPAPTDFSARFSCISREYKYFFWR----------ENLN---------LSAMESAGKKF 247
G F+A+ C +R Y Y E+L+ L ++ K +
Sbjct: 164 GVERVTKGFNAKDQCNARTYTYTLPTMAFAPFEEKVEDLHDTFQISPELLQKVKETLKLY 223
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G +F NF + + KR + SF S + S +G + +K++G +F+ HQ+R MV
Sbjct: 224 EGTKNFHNFTSKKSFLDPSSKRFIMSFTSSDPFRSPQGIEFVTLKVKGQSFMLHQIRKMV 283
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
+ I +G + +E L + MAP + LVL + ++ D H+
Sbjct: 284 GLAIAIVRGNTTAATLERALTEERL----DLPMAPGLGLVLDTVHYERYNDRYGKDGIHN 339
Query: 368 LRLHLRNECQV 378
E QV
Sbjct: 340 PLTWQAQEAQV 350
>gi|226708659|sp|B8CPW5.1|TRUA_SHEPW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|212557374|gb|ACJ29828.1| tRNA pseudouridine synthase [Shewanella piezotolerans WP3]
Length = 261
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 112/251 (44%), Gaps = 51/251 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
VAL + Y G R+YG+ +++ +V+ ++ KAL K E +C GRTD GV
Sbjct: 3 VALGIEYDGSRYYGWQRQLDVD-SVQGQLEKALSKV------ANEPITVQCAGRTDTGVH 55
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
GQV+ +TN I E + +N LP DI V
Sbjct: 56 GTGQVV---------HFDTN-----------AIRKETAWTLGVNVNLPDDIAVRWVKVVD 95
Query: 213 TDFSARFSCISREYKYFF----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS +R Y+Y +R N++ M A + FVGEHDF +F
Sbjct: 96 EEFHARFSATARRYRYMIYNHQLRPGILRSGVSHYRGNIDEDKMHQAAQLFVGEHDFTSF 155
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ + ++ EI ++ +G +C + I+ +AFL H VR +V L IG+G
Sbjct: 156 RALQCQSKTPFR------EIHEVNVTRQGMYIC-VDIKANAFLHHMVRNIVGTLLEIGKG 208
Query: 317 LESIDVIESLL 327
+ + + +LL
Sbjct: 209 NQPKEWVNTLL 219
>gi|290891783|ref|ZP_06554780.1| truA protein [Listeria monocytogenes FSL J2-071]
gi|404408978|ref|YP_006691693.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2376]
gi|290558377|gb|EFD91894.1| truA protein [Listeria monocytogenes FSL J2-071]
gi|404243127|emb|CBY64527.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2376]
Length = 248
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 109/252 (43%), Gaps = 48/252 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALTK----MNKGKTVRVTASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQVMTPFDISFLTVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L++S M+ A K+ +GEHDF +
Sbjct: 97 PDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 GLESIDVIESLL 327
G S D I L
Sbjct: 211 GRISPDDISKAL 222
>gi|325276985|ref|ZP_08142659.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51]
gi|324097881|gb|EGB96053.1| tRNA pseudouridine synthase A [Pseudomonas sp. TJI-51]
Length = 286
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 103/255 (40%), Gaps = 56/255 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ + +AL K VA++ + GRTD GV
Sbjct: 21 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSK----VANEPIAVVC-AGRTDAGVHG 75
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ R+ + DE + N LP DI V+ P P
Sbjct: 76 CGQVVHFDTRA--------------------VRDERAWTMGTNFNLPHDISVVWSQPMPA 115
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
DF ARF +R Y+Y + + L++ M A + +G HDF F
Sbjct: 116 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVERMAQAAQSLLGTHDFSAFR 175
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H Y VT Q+ + +R +AFL H VR + VL I
Sbjct: 176 ASQCQAKSPIKHIYHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMAI 224
Query: 314 GQGLESIDVIESLLD 328
G G + +L+
Sbjct: 225 GSGERPVSWAREVLE 239
>gi|422933756|ref|ZP_16966531.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
gi|339891337|gb|EGQ80330.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
animalis ATCC 51191]
Length = 245
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 115/274 (41%), Gaps = 48/274 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ ++ Y G R+YGF N + TV+ EI K L + K+E + GRTD+GV +
Sbjct: 6 IKIEFRYDGSRYYGFQRQPN-KITVQGEIEKILR-----IVTKEEINLISAGRTDRGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV Y SNI IE Y +L R LP DI ++
Sbjct: 60 YHQVSNFYTSSNI-----------------PIE---KYKYLLTRALPNDIDILSVEEVDE 99
Query: 214 DFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
+F+AR + REY Y F ++ +++ +E FVG HDF+NF
Sbjct: 100 NFNARHNAKMREYIYIISWIKNPFEARYCKFVKDKIDVRKLEKIFSDFVGVHDFKNFRLN 159
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
D + VT EI + + G I I+GSAFL QVR MV I G
Sbjct: 160 DCVS------KVTIREIYQIEVKYFGESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLP 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ I +L N R+ + N+ L L ++
Sbjct: 214 ENHIRLML--NDFTREYKKNLVEAEGLYLNKINY 245
>gi|296131870|ref|YP_003639117.1| tRNA pseudouridine synthase A [Thermincola potens JR]
gi|296030448|gb|ADG81216.1| tRNA pseudouridine synthase A [Thermincola potens JR]
Length = 246
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 113/267 (42%), Gaps = 55/267 (20%)
Query: 92 RYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
R + + + Y G ++GF +D N+ PT++ + KAL K +E + GRTD
Sbjct: 2 RNIKMTIEYDGTSYHGFQKQADQNL-PTIQEALEKALRKL-----TGEEISVTGAGRTDA 55
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV ++GQVI Y S+I N +VR LN VLP+DI
Sbjct: 56 GVHALGQVINFYTESSIPTGN--------------------FVRALNSVLPEDIVAKDAV 95
Query: 210 PAPTDFSARFSCISREYKY---------FFWRE-------NLNLSAMESAGKKFVGEHDF 253
AP DF A+F + Y+Y F+R LN+ M A VG+HDF
Sbjct: 96 EAPGDFHAQFWAKKKTYRYTIFNDTVPSVFYRRYSLFVPCKLNVDNMRKAASFLVGQHDF 155
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
F + + + R + E+ + +L + + + FL++ VR + L I
Sbjct: 156 SAF-RAAGSTARSSIRTMYRAEVE------QEGELIHVYLEANGFLYNMVRIITGTLLYI 208
Query: 314 GQGL----ESIDVIESLLDTNGIPRKP 336
GQG E D+I S T P P
Sbjct: 209 GQGKLRVEEMKDIIASGDRTLAGPTVP 235
>gi|356545824|ref|XP_003541334.1| PREDICTED: tRNA pseudouridine synthase A 1-like [Glycine max]
Length = 327
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 120/275 (43%), Gaps = 46/275 (16%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G ++ G+ + PTV+ + KAL + L +K+ RTD GV + GQV
Sbjct: 50 LAYDGTQYAGWQYQES-PPTVQCTVEKALTQATKL--QRKDLCLVGASRTDAGVHAWGQV 106
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
+ N +A+ LN +LP DIR+ SPA +F A
Sbjct: 107 AHFFTPFNYDNLEQLHAA-------------------LNGLLPTDIRIREISPASAEFHA 147
Query: 218 RFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKMDA 261
RFS S+ Y Y + + LN + M A FVG+HDF F
Sbjct: 148 RFSAKSKIYHYKIYNDAIMDPFQRHFAYHSVYKLNSAVMREAATYFVGKHDFSAFANASH 207
Query: 262 AN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESI 320
+ V + +HV F++ E L +++ GS FL+ QVR MVA+L IG+
Sbjct: 208 NDRVPDPVKHVFRFDLK------EMGALLQLEVEGSGFLYRQVRNMVALLLQIGREAIPP 261
Query: 321 DVIESLLDTNGIPRKPQYNM-APEIPLVLQSCDFD 354
D++ +L + +Y++ AP L L S +++
Sbjct: 262 DIVPHILASRDRKELAKYSLPAPPHGLCLVSINYN 296
>gi|448474280|ref|ZP_21602139.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
gi|445817587|gb|EMA67456.1| tRNA pseudouridine synthase A [Halorubrum aidingense JCM 13560]
Length = 288
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 107/281 (38%), Gaps = 41/281 (14%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESH-----YSRCGRTDK 149
A +V Y G+ + GF + TVE + +AL K +L + +H Y+ GRTD
Sbjct: 3 AFRVAYDGREYAGFQRQPHAR-TVEGTLLRALAKHGILDRGEGPTHATPPGYAAAGRTDA 61
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GVS++ Q +A + R N LP IRV +
Sbjct: 62 GVSALAQTVAFEAPPWLTP------------------------RAFNGQLPGSIRVWAAA 97
Query: 210 PAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKR 269
F A + R Y+Y + ++ + A + GEHDF N + V N
Sbjct: 98 DVREGFHATHDAVERTYRYHLYAPAIDDDRVRDALTRLSGEHDFHNLTSDETGTVRNLTA 157
Query: 270 HVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
T L I++ F VR +V+ + +G+G I+ LL
Sbjct: 158 TAT-----------RAGDLLVIELSAGGFPRALVRRVVSAVRAVGRGTTEPARIDRLLAA 206
Query: 330 NGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRL 370
+P + AP PLVL + +DG+ F +A R+
Sbjct: 207 EPVPGELGVPPAPAEPLVLWNAAYDGVTFETDPEAAESARV 247
>gi|27262396|gb|AAN87479.1| tRNA pseudouridine synthase A [Heliobacillus mobilis]
Length = 249
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 49/235 (20%)
Query: 100 YFGQRFYGFAS--DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
Y G ++GF + D PT++ E+ +A++ V +E + GRTD GV + GQV
Sbjct: 3 YDGTSYHGFQTQEDPTNLPTIQDELMRAIQ-----VLTGEEVKITCAGRTDAGVHARGQV 57
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
+ + + +I DE + +N +LPKDI V+ DF +
Sbjct: 58 V-------------------DFLTTSRIPDE-KFPLAMNSLLPKDIAVVKAETVAEDFHS 97
Query: 218 RFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKMDA 261
RF + + Y+Y + L+++AM+ A FVG HDFR FC
Sbjct: 98 RFGALGKHYRYSIYNHRIHSPFHHRYSYQVYPPLHVAAMQEAAGYFVGTHDFRGFCAT-G 156
Query: 262 ANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ V ++ R I C ++ L + + G FL++ VR + L +G+G
Sbjct: 157 SPVKDFVR-----TIWHCTLTVTEENLLLMDVMGDGFLYNMVRIITGTLVDVGKG 206
>gi|282882119|ref|ZP_06290760.1| tRNA pseudouridine synthase A [Peptoniphilus lacrimalis 315-B]
gi|281298149|gb|EFA90604.1| tRNA pseudouridine synthase A [Peptoniphilus lacrimalis 315-B]
Length = 243
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 105/239 (43%), Gaps = 49/239 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +KV Y G ++G+ ++ T+E E+ KA+ T KKE+ GRTD+GV +
Sbjct: 3 ILIKVTYDGTNYHGYQVQNKLK-TIEGELSKAINNTL-----KKETKIYSAGRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQ + Y + I N RV+N LP DI VI P
Sbjct: 57 LGQYVNFYTDTTIDLGNL--------------------PRVINFHLPDDISVISAKEVPF 96
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFC 257
DF ARFS + Y+Y + +L+LS M + K +G+ DF++F
Sbjct: 97 DFHARFSAKEKIYRYVVYNNKYRNAIYHNRAYQYPFSLDLSLMNESFKYLIGQKDFKSFM 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
DA V + R + S ++ + N+ +G +FL + +R ++ IG+G
Sbjct: 157 GRDAI-VKDTIRTIYSIKVK------KDNKFIYFDFQGKSFLKNMIRIIMGTAIEIGRG 208
>gi|269216172|ref|ZP_06160026.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122]
gi|269130431|gb|EEZ61509.1| tRNA pseudouridine synthase A [Slackia exigua ATCC 700122]
Length = 331
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 120/307 (39%), Gaps = 50/307 (16%)
Query: 70 GCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEK 128
GC G V R VAL V Y G F GFA TV+ E+ + L
Sbjct: 52 GCAAGA--VFSAAEALETSRLSRCVALGVAYDGAPFAGFARQAESHVTTVQGELERVLS- 108
Query: 129 TRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDE 188
V ++ GRTD GV ++GQV++ L T +E
Sbjct: 109 ----VLYRRAVDTVCAGRTDAGVHALGQVVSFDL----------------TEEEFASRPL 148
Query: 189 IDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN-------------- 234
++ +N ++ + I V P FSARF SREY+YF N
Sbjct: 149 RTLMKSMNALVDERITVTCAEERPAGFSARFDATSREYRYFIATGNARPVLIARSVWHLR 208
Query: 235 ---LNLSAMESAGKKFVGEHDFRNFCKMDAA-----NVHNYKRHVTSFEISPCYISFEGN 286
L++ AM +A + VGEHDF++FC +A + R V ++ ++ G
Sbjct: 209 GAPLDVDAMNTAARFLVGEHDFKSFCVASSALHLEGEGRSTCRRVIEADVRSTHVM--GT 266
Query: 287 QLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPL 346
+ ++I G+AFL +R +V L +GQG + +L R AP L
Sbjct: 267 PVVEVRIVGNAFLHSMIRIIVGTLVAVGQGRRDASWVADVLAAR--DRTAAGETAPACGL 324
Query: 347 VLQSCDF 353
S +
Sbjct: 325 TFWSVRY 331
>gi|404443057|ref|ZP_11008230.1| tRNA pseudouridine synthase A [Mycobacterium vaccae ATCC 25954]
gi|403655971|gb|EJZ10795.1| tRNA pseudouridine synthase A [Mycobacterium vaccae ATCC 25954]
Length = 298
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 109/278 (39%), Gaps = 45/278 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKT-RLLVADKKESHYSRCGRTDKGVSSV 154
L V Y G F G+A+ TV I AL R V + GRTD GV +
Sbjct: 24 LDVAYDGTEFAGWATQAGQR-TVAGSIDDALSTVFRSPVVTRA------AGRTDSGVHAT 76
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEI-DYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + + S E E VR L R+LP+D+RV + A
Sbjct: 77 GQVAHV-------DVPSEALSHAYPRTPRPAEPEFRPLVRRLARMLPEDVRVREITRAAA 129
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y W L++ AM A ++ +G HDF F
Sbjct: 130 GFDARFSALRRHYVYRLTTAPYGAEPAQARYVTAWPRPLDVPAMSDAARELLGLHDFAAF 189
Query: 257 CK-MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
C+ D A + + C + EG A+ + AF W+ VR +V L +G+
Sbjct: 190 CRHRDGATT------IRELQRLDCEHAGEG---IAVHVTADAFCWNMVRSLVGALLAVGE 240
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LLD + R + AP L L D+
Sbjct: 241 HRRDSAWLAGLLDASR--RSSDFAAAPARGLTLVGVDY 276
>gi|116873964|ref|YP_850745.1| tRNA pseudouridine synthase A [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|123466636|sp|A0ALT4.1|TRUA_LISW6 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|116742842|emb|CAK21966.1| tRNA pseudouridine synthase A [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 248
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 122/280 (43%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL+K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQIQPNAR-TVQAEIEKALKK----MHKGKNVRITASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T + Q + L + P DI + A
Sbjct: 57 HAKGQVIHF------------DSDLDITADKFQ--------KALQVMTPFDISFLTVDEA 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L+++ M+ A + +GEHDF +
Sbjct: 97 PADFHARFGTVGKEYRYIVKRTKIFDPFSRNFALHYPYELDIAKMKLASECLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E + I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDEETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 G-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G + S D+ E+LL + +K AP L L D++
Sbjct: 211 GRISSEDITEALLARD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|448390191|ref|ZP_21565971.1| tRNA pseudouridine synthase A [Haloterrigena salina JCM 13891]
gi|445667519|gb|ELZ20161.1| tRNA pseudouridine synthase A [Haloterrigena salina JCM 13891]
Length = 295
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 109/280 (38%), Gaps = 41/280 (14%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVSS 153
A ++ Y G ++GF ++ PTVE IF AL +L D + Y+ GRTD GVS+
Sbjct: 5 AFRIAYDGTGYHGFQRQPDV-PTVEDAIFDALRDLEVLAPDADRPDGYAAAGRTDAGVSA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q +A+ + R LN LP DIR + AP
Sbjct: 64 LAQTVALEAPDWLTP------------------------RALNGELPADIRAWAAADAPR 99
Query: 214 DFSARFSCISREYKYFFW-------RENLNLSAMESA------GKKFVGEHDFRNFCKM- 259
+F A REY Y + R + A + A G+ V + FR C+
Sbjct: 100 EFHATHHAERREYAYHLYAPPADSRRRDRAAPAGDRADDRGASGRNAVDDDRFRAACEAL 159
Query: 260 -DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + HN + E SP + + + F VR +V++ +G G
Sbjct: 160 SGSHDFHNLTPDDRNTERSPTLEATRDGDFLVLTVTAGGFARELVRRLVSLARAVGTGDA 219
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
++ I+ D +P A PLVL + D+ L F
Sbjct: 220 PLEKIDRAFDPEPLPGHEGVAPAAPEPLVLTAVDYPDLSF 259
>gi|163750187|ref|ZP_02157429.1| tRNA pseudouridine synthase A [Shewanella benthica KT99]
gi|161330043|gb|EDQ01027.1| tRNA pseudouridine synthase A [Shewanella benthica KT99]
Length = 261
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 112/250 (44%), Gaps = 49/250 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VAL + Y G ++YG+ ++ TV++++ +AL K VA++ S + GRTD GV
Sbjct: 3 VALGIEYDGSKYYGWQRQLEVD-TVQAQLERALSK----VANQPISVHC-AGRTDSGVHG 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ + I E + +N LP DI V
Sbjct: 57 TGQVVHF--------------------ETTAIRKESAWTLGVNVNLPDDIAVKWVKLVDD 96
Query: 214 DFSARFSCISREYKYFF----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
DF ARFS +R Y+Y +R L+ M A + FVGEHDF +F
Sbjct: 97 DFHARFSATARRYRYIIYNYHLRPGILRSGVSHYRGQLDEDKMHHAAQHFVGEHDFTSFR 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+ + + RHV ++ +G LC + I+ +AFL H VR +V L IG G
Sbjct: 157 ALHCQSKTPF-RHVHEVNVTR-----QGMYLC-VDIKANAFLHHMVRNIVGSLIEIGLGH 209
Query: 318 ESIDVIESLL 327
++ D I SLL
Sbjct: 210 QNEDWIVSLL 219
>gi|86739325|ref|YP_479725.1| tRNA pseudouridine synthase A [Frankia sp. CcI3]
gi|123737799|sp|Q2JFE6.1|TRUA_FRASC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|86566187|gb|ABD09996.1| tRNA pseudouridine synthase A [Frankia sp. CcI3]
Length = 274
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 104/266 (39%), Gaps = 55/266 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A TV+ ++ AL + VA + GRTD GV +VG
Sbjct: 10 LDLSYDGTPFAGWARQPGQR-TVQGDVEDALMR----VARLPAVRLTVAGRTDSGVHAVG 64
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + L ++ R LN VL + +R+IG +PAP F
Sbjct: 65 QVAHVDLPDDVPLGG--------------------LARRLNGVLDRAVRIIGLAPAPPGF 104
Query: 216 SARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS +SR Y Y W L++ AM +A VGEHDF FC+
Sbjct: 105 DARFSALSRRYVYRITDAPYGAEPLRRFDTLAWPRPLDVPAMAAAALFLVGEHDFAAFCR 164
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A V R + + + AF VR +V L +G+G
Sbjct: 165 RREGATTVRTLLR---------LDVLRRPEGVVVADVEADAFCHSMVRALVGALLAVGEG 215
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAP 342
+ ++L G+ R P +AP
Sbjct: 216 RKPPQWPAAVLH-RGV-RDPAVTVAP 239
>gi|423137978|ref|ZP_17125621.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371958928|gb|EHO76629.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 245
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 116/274 (42%), Gaps = 48/274 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ ++ Y G R+YGF N + T++SEI K L + K+E + GRTD+GV +
Sbjct: 6 IKIEFRYDGSRYYGFQRQPN-KITIQSEIEKILR-----IVTKEEINLISAGRTDRGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV Y S I IE Y +L R LPKDI ++
Sbjct: 60 NHQVSNFYTSSTI-----------------PIEK---YKYLLTRALPKDIDILSVEEVDE 99
Query: 214 DFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
+F+AR + REY Y F ++ +++ +E FVG HDF+NF
Sbjct: 100 NFNARHNAKMREYIYIISWIKNPFEARYCKFVKKKIDVRKLEKIFSDFVGVHDFKNFRLN 159
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
D + +T EI + + G I I+GSAFL QVR MV I G
Sbjct: 160 DCVS------KITIREIYQIEVKYFGESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLP 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ I +L N R+ + N+ L L ++
Sbjct: 214 ENHIRLML--NDFTREYKKNLVEAEGLYLNKINY 245
>gi|395238108|ref|ZP_10416087.1| tRNA pseudouridine synthase A [Turicella otitidis ATCC 51513]
gi|423351598|ref|ZP_17329229.1| tRNA pseudouridine synthase A [Turicella otitidis ATCC 51513]
gi|394486544|emb|CCI84175.1| tRNA pseudouridine synthase A [Turicella otitidis ATCC 51513]
gi|404386318|gb|EJZ81481.1| tRNA pseudouridine synthase A [Turicella otitidis ATCC 51513]
Length = 294
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 116/277 (41%), Gaps = 42/277 (15%)
Query: 96 LKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
L + Y G F+G+A + E TVE + AL L++ + + GRTD+GV +
Sbjct: 21 LDLAYDGTGFHGWAKQADPELRTVEGTLADALS---LVL--RAPVELTVAGRTDRGVHAA 75
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQV +++ + N ++G + VR ++R+LP D+ + G + AP
Sbjct: 76 GQVA----HADVPAESLNQRAIGG--------NPARLVRRMSRLLPGDVSLTGATVAPPG 123
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y+Y W + ++L + A VG HDF FC
Sbjct: 124 FDARFSALRRRYRYRVSTAPAGPLPTRRVDTASWPKPVDLGLAQVAADALVGLHDFAAFC 183
Query: 258 KMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ A H R + +F C E L A + AF W VR +V +G+G
Sbjct: 184 R---AKPHATTVRDLEAFTWRDCSTPEEPGVLEA-DVVADAFCWSMVRSLVGWCLAVGEG 239
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
LL N R +AP L L + D+
Sbjct: 240 RRDPAASAGLL--NERERSSAVPVAPACGLTLVAVDY 274
>gi|422810634|ref|ZP_16859045.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-208]
gi|378750839|gb|EHY61430.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL J1-208]
Length = 248
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 109/252 (43%), Gaps = 48/252 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALTK----MHKGKSVRITASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSELAITAEKFQ--------KALQVMTPFDISFLTVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L++S M+ A ++ +GEHDF +
Sbjct: 97 PNDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASERLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 GLESIDVIESLL 327
G S D I L
Sbjct: 211 GRISPDDISKAL 222
>gi|339486508|ref|YP_004701036.1| tRNA pseudouridine synthase A [Pseudomonas putida S16]
gi|338837351|gb|AEJ12156.1| tRNA pseudouridine synthase A [Pseudomonas putida S16]
Length = 284
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 103/255 (40%), Gaps = 56/255 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ + +AL K VA++ S GRTD GV
Sbjct: 19 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSK----VANEPISVIC-AGRTDAGVHG 73
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQ++ R+ + DE + N LP DI V+ P P
Sbjct: 74 CGQIVHFDTRA--------------------VRDERAWTMGTNFNLPHDISVVWARPMPA 113
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
DF ARF +R Y+Y + + L++ M A + +G HDF F
Sbjct: 114 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVERMAEAAQYLLGTHDFSAFR 173
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H Y VT Q+ + +R +AFL H VR + VL I
Sbjct: 174 ASQCQAKSPIKHIYHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMTI 222
Query: 314 GQGLESIDVIESLLD 328
G G + +L+
Sbjct: 223 GAGERPVTWAREVLE 237
>gi|227487069|ref|ZP_03917385.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227541767|ref|ZP_03971816.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227093143|gb|EEI28455.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227182473|gb|EEI63445.1| tRNA pseudouridine synthase A [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 284
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 45/252 (17%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G F+G+A+ TV+ I +AL RL++ + GRTD GV + GQV
Sbjct: 9 IAYDGTNFHGWATQKGGLRTVQQTIEEAL---RLVLRLDDSYQLTVAGRTDAGVHATGQV 65
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
+ + + E Q D R LN++LP DI ++ S AP F A
Sbjct: 66 ANMVVPESCLE------------QRSIDGDPARLTRRLNKLLPDDISLLAVSAAPEAFDA 113
Query: 218 RFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCKMD 260
RF + R Y+Y W++ +++ + + FVG HDF CK
Sbjct: 114 RFGALRRYYEYRVTTRPGGPLPLRRFDTATWKKPVDIDVVSACASAFVGLHDFAALCK-- 171
Query: 261 AANVHNYKRHVTSFEISPCYISFEGNQLCA-----IKIRGSAFLWHQVRCMVAVLFMIGQ 315
+K H T+ + + + C K+ AF W VR +V +G+
Sbjct: 172 ------HKPHATTIRTVETFTWEDISTPCEPQTYLAKVSADAFCWSMVRSLVGACLAVGE 225
Query: 316 GLESIDVIESLL 327
G + LL
Sbjct: 226 GRRDLSFAPHLL 237
>gi|431801485|ref|YP_007228388.1| tRNA pseudouridine synthase A [Pseudomonas putida HB3267]
gi|430792250|gb|AGA72445.1| tRNA pseudouridine synthase A [Pseudomonas putida HB3267]
Length = 284
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 103/255 (40%), Gaps = 56/255 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ + +AL K VA++ S GRTD GV
Sbjct: 19 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSK----VANEPISVIC-AGRTDAGVHG 73
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQ++ R+ + DE + N LP DI V+ P P
Sbjct: 74 CGQIVHFDTRA--------------------VRDERAWTMGTNFNLPHDISVVWSRPMPA 113
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
DF ARF +R Y+Y + + L++ M A + +G HDF F
Sbjct: 114 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVERMAEAAQYLLGTHDFSAFR 173
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H Y VT Q+ + +R +AFL H VR + VL I
Sbjct: 174 ASQCQAKSPIKHIYHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMTI 222
Query: 314 GQGLESIDVIESLLD 328
G G + +L+
Sbjct: 223 GAGERPVTWAREVLE 237
>gi|453068393|ref|ZP_21971672.1| tRNA pseudouridine synthase TruA [Rhodococcus qingshengii BKS
20-40]
gi|452766043|gb|EME24294.1| tRNA pseudouridine synthase TruA [Rhodococcus qingshengii BKS
20-40]
Length = 294
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 113/277 (40%), Gaps = 54/277 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A ++ TV EI + +L + + GRTD GV + G
Sbjct: 25 LDISYDGTDFSGWARQTDLR-TVCGEI-----EDKLGTVLRHPVQLTVAGRTDAGVHATG 78
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + E +D VR L R LPKD+RV S P DF
Sbjct: 79 QVAHV-----------------DVPGELLPDDPSRLVRRLARFLPKDVRVKQISVVPGDF 121
Query: 216 SARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y + + L+L AM+ A + +G H+F FCK
Sbjct: 122 DARFSAMRRYYEYRVTNAAFGVEPLRARDTVSYPKPLDLGAMQEASNRLLGLHNFAAFCK 181
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A V +R F+ + EG A + AF W VR +V + +G+G
Sbjct: 182 RREGATTVRELQR----FDWTQ-----EGTVFTAY-VNADAFCWSMVRSLVGAVLSVGEG 231
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ D + LLD R +AP L L D+
Sbjct: 232 RRTADWVAGLLDETS--RSSSILVAPAHGLSLVRVDY 266
>gi|195391039|ref|XP_002054173.1| GJ24293 [Drosophila virilis]
gi|194152259|gb|EDW67693.1| GJ24293 [Drosophila virilis]
Length = 408
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/312 (24%), Positives = 131/312 (41%), Gaps = 50/312 (16%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGR 146
++ A+ + Y G +YG + M+ T+E E+FK + K + + D E + + R R
Sbjct: 69 RKKSAILLSYCGANYYGMQRNPGMQ-TIEEELFKVMLKHKWITEDSFEQVQIASFQRAAR 127
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ QV ++ ++ +E+D ++ N LP IR+
Sbjct: 128 TDKGVSAARQVCSV-----------------------KLPEELD-LQAFNADLPDQIRLF 163
Query: 207 GWSPAPTDFSARFSCISREYKYFF----------------WRENLNLS-AMESAGKKFVG 249
G F+A+ C +R Y Y +R L L + + K + G
Sbjct: 164 GVERVTKGFNAKDQCNARTYTYTLPTIAFAAFDEQHEQETYRIPLKLQEVVNTTLKLYEG 223
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
+F NF + KR++ SF S ++S + + ++++G +F+ HQ+R MV +
Sbjct: 224 TKNFHNFTSKKNFLDPSAKRYIMSFTCSAPFLSPQSIEFVTLQVKGQSFMLHQIRKMVGL 283
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
I +G + +E L + MAP + LVL + ++ D H+
Sbjct: 284 AIAIVRGNTTTATLERALTEERL----DLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPL 339
Query: 370 LHLRNECQVYQL 381
E QV Q
Sbjct: 340 TWEAQEEQVRQF 351
>gi|422410882|ref|ZP_16487843.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL F2-208]
gi|313606591|gb|EFR83384.1| tRNA pseudouridine synthase A [Listeria monocytogenes FSL F2-208]
Length = 248
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 109/252 (43%), Gaps = 48/252 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL K + K + GRTD GV
Sbjct: 3 RYKAI-ITYDGSGFYGYQVQPNTR-TVQAEIEKALTK----MHKGKTVRITASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSDLDITAEKFQ--------KALQVMTPFDISFLTVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L++S M+ A K+ +G+HDF +
Sbjct: 97 PDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGKHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 GLESIDVIESLL 327
G S D I L
Sbjct: 211 GRISPDDISKAL 222
>gi|160903290|ref|YP_001568871.1| tRNA pseudouridine synthase ACD [Petrotoga mobilis SJ95]
gi|189030138|sp|A9BGW7.1|TRUA_PETMO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|160360934|gb|ABX32548.1| tRNA pseudouridine synthase A [Petrotoga mobilis SJ95]
Length = 245
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 109/255 (42%), Gaps = 50/255 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
++VA VMY G FYG+ S TV+ E KAL+ V KKE CGRTD GV
Sbjct: 2 KWVAATVMYDGSNFYGYQSQPTFR-TVQDEFEKALK-----VIFKKEIPSYACGRTDTGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+VGQVI+ + + E + E+ I+D LN +LP+D+ V
Sbjct: 56 HAVGQVISFKVEN-------------ENMTEKNIKD------ALNAILPEDVYVKEVKEV 96
Query: 212 PTDFSARFSCISREYKYF---------FWREN-------LNLSAMESAGKKFVGEHDFRN 255
F+ R R Y YF F R+ LNL M A K F GEHDF +
Sbjct: 97 KEGFNPRAEAKKRIYHYFIYISEDPNIFLRDRVWWIPFALNLEKMRQAAKYFEGEHDFTS 156
Query: 256 F-CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
F D N V E+ L I++ G +FL VR +V L +G
Sbjct: 157 FKTGNDERNPIRTIYRVRIIELR--------KDLILIRVEGKSFLKRMVRNIVGSLVKVG 208
Query: 315 QGLESIDVIESLLDT 329
+ ++ I+ +L+
Sbjct: 209 TDVWEVEKIQEILEA 223
>gi|395444632|ref|YP_006384885.1| tRNA pseudouridine synthase A [Pseudomonas putida ND6]
gi|388558629|gb|AFK67770.1| tRNA pseudouridine synthase A [Pseudomonas putida ND6]
Length = 286
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 56/255 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ + +AL K VA++ S GRTD GV
Sbjct: 21 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSK----VANEPISVVC-AGRTDAGVHG 75
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ R+ + DE + N LP DI V+ P P
Sbjct: 76 CGQVVHFDTRA--------------------VRDERAWTMGTNFNLPHDISVVWSRPMPA 115
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
DF ARF +R Y+Y + + L++ M A + +G HDF F
Sbjct: 116 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVDRMAEAAQYLLGTHDFSAFR 175
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H Y VT Q+ + +R +AFL H VR + VL I
Sbjct: 176 ASQCQAKSPIKHIYHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMAI 224
Query: 314 GQGLESIDVIESLLD 328
G G + +L+
Sbjct: 225 GAGERPVAWAREVLE 239
>gi|392944788|ref|ZP_10310430.1| pseudouridylate synthase I [Frankia sp. QA3]
gi|392288082|gb|EIV94106.1| pseudouridylate synthase I [Frankia sp. QA3]
Length = 298
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 102/266 (38%), Gaps = 55/266 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A TV+ ++ AL + VA + GRTD GV + G
Sbjct: 34 LDIAYDGTPFAGWARQPGQR-TVQGDVEDALIR----VARLPAVRLTVAGRTDSGVHAAG 88
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + L +++ R LN VL + +RV G +PAP F
Sbjct: 89 QVAHVDLPADVPLGG--------------------LARRLNGVLDRSVRVTGLAPAPAGF 128
Query: 216 SARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS +SR Y Y W L+ AM SA VGEHDF FC+
Sbjct: 129 DARFSALSRRYVYRITDAAFGAEPLRRFDTLAWPRPLDAPAMASAALLLVGEHDFAAFCR 188
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A V R + + + + AF VR +V L +G+G
Sbjct: 189 RREGATTVRTLLR---------LDVLRRPDGVVVADVEADAFCHSMVRALVGALLAVGEG 239
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAP 342
++L G+ R P +AP
Sbjct: 240 RRPPQWPAAVL-RRGM-RDPAVTVAP 263
>gi|148548973|ref|YP_001269075.1| tRNA pseudouridine synthase A [Pseudomonas putida F1]
gi|148513031|gb|ABQ79891.1| tRNA pseudouridine synthase A [Pseudomonas putida F1]
Length = 332
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 56/255 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ + +AL K VA++ S GRTD GV
Sbjct: 67 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSK----VANEPISVVC-AGRTDAGVHG 121
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ R+ + DE + N LP DI V+ P P
Sbjct: 122 CGQVVHFDTRA--------------------VRDERAWTMGTNFNLPHDISVVWSRPMPA 161
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
DF ARF +R Y+Y + + L++ M A + +G HDF F
Sbjct: 162 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVDRMAEAAQFLLGTHDFSAFR 221
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H Y VT Q+ + +R +AFL H VR + VL I
Sbjct: 222 ASQCQAKSPIKHIYHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMAI 270
Query: 314 GQGLESIDVIESLLD 328
G G + +L+
Sbjct: 271 GAGERPVAWAREVLE 285
>gi|379763834|ref|YP_005350231.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare
MOTT-64]
gi|406032525|ref|YP_006731417.1| tRNA pseudouridine synthase A [Mycobacterium indicus pranii MTCC
9506]
gi|378811776|gb|AFC55910.1| tRNA pseudouridine synthase A [Mycobacterium intracellulare
MOTT-64]
gi|405131072|gb|AFS16327.1| tRNA pseudouridine synthase A [Mycobacterium indicus pranii MTCC
9506]
Length = 251
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 94/230 (40%), Gaps = 39/230 (16%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNA-SMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV + ++ NA S V E + + +R L R LP D
Sbjct: 22 AGRTDAGVHATGQVAHV----DVPAAALPNAYSRAPHVGEAEF---LPLLRRLGRFLPTD 74
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK 245
+RV+ AP F ARFS + R Y Y W L++ AM +A
Sbjct: 75 VRVVDIVRAPAGFDARFSALRRHYVYRLSTAPWGVDPQQVRYVTAWPRPLDVEAMATASP 134
Query: 246 KFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
+G HDF FC+ +A + + +R + EG+ + A ++ AF W V
Sbjct: 135 DLLGLHDFAAFCRHRENATTIRDLQR---------LEWTREGDLITA-RVSADAFCWSMV 184
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
R +V L +G+ + LL R Y AP L L D+
Sbjct: 185 RSLVGALLAVGEHRRPVSWCRELLSATA--RSSDYATAPAHGLTLVGVDY 232
>gi|422423328|ref|ZP_16500281.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL S4-171]
gi|313636153|gb|EFS02014.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL S4-171]
Length = 248
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 121/285 (42%), Gaps = 61/285 (21%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R+ A+ + Y G FYG+ N TV++EI KAL+K + K + GRTD GV
Sbjct: 3 RFKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALKK----MHKGKSVRVTASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID-----YVRVLNRVLPKDIRVI 206
+ GQVI + E+D + + L + P DI +
Sbjct: 57 HAKGQVI-------------------------HFDSELDISAEKFQKALQVMTPFDISFL 91
Query: 207 GWSPAPTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGE 250
AP DF ARF + +EY+Y R LNL M+ A ++ VGE
Sbjct: 92 IVEEAPADFHARFGTVGKEYRYVVKRTKVFDPFSRNFALHYPYELNLEKMKLASERLVGE 151
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
HDF +FC +A + T + I E ++ I +G+ FL++ VR + L
Sbjct: 152 HDFTSFC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTL 205
Query: 311 FMIGQG-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
GQG + D+ ++LL + +K AP L L D++
Sbjct: 206 LDAGQGRISPDDITKALLARD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|150392126|ref|YP_001322175.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
gi|149951988|gb|ABR50516.1| tRNA pseudouridine synthase A [Alkaliphilus metalliredigens QYMF]
Length = 255
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 51/278 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + +++ Y G + G+ N P+++ EI KAL+K + ++ +H S GRTD GV
Sbjct: 2 RNIMIEIEYDGTNYSGWQIQQN-APSIQEEIAKALKK---VTGEEITTHGS--GRTDAGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV + L S I + I + LN LP+DI ++
Sbjct: 56 HAQGQVASFQLHSKIPA------------------ERISFA--LNGKLPRDITILEAKEM 95
Query: 212 PTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRN 255
P DF AR+S I + Y Y + L+L M+ A + +G HDF+
Sbjct: 96 PEDFHARYSAIGKRYGYCIMNNTHGSALLRNYCYHVPYKLDLQKMKQASETLLGTHDFKG 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F + +R I +G+Q+ I ++G+ FL+ VR +V L IG
Sbjct: 156 FMASGSQVKSTVRR------IDEINFDTQGSQIW-ITMQGNGFLYKMVRIIVGSLVGIGT 208
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G + ++++L+T R+ AP L LQ +
Sbjct: 209 GKIKEEALQNILETQN--RRVAVKTAPAQGLYLQKVFY 244
>gi|400535982|ref|ZP_10799518.1| tRNA pseudouridine synthase A [Mycobacterium colombiense CECT 3035]
gi|400331025|gb|EJO88522.1| tRNA pseudouridine synthase A [Mycobacterium colombiense CECT 3035]
Length = 252
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 37/229 (16%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDI 203
GRTD GV + GQV + + E N V E + + +R L R LP D+
Sbjct: 22 AGRTDAGVHATGQVAHVDV---PPEALPNAYPRAPRVGEPEF---LPLLRRLGRFLPTDV 75
Query: 204 RVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKK 246
RV+G + AP F ARFS + R Y Y W L++ AM +A +
Sbjct: 76 RVVGIARAPAGFDARFSALRRHYVYRLSTAPWGVQPLQARYVTAWPRPLDVEAMATASRD 135
Query: 247 FVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
+G HDF FC+ +A + + +R + +G+ + A ++ AF W VR
Sbjct: 136 LLGLHDFAAFCRHRENATTIRDLQR---------LEWTRDGDLITA-QVSADAFCWSMVR 185
Query: 305 CMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+V L +G+ + LL + R + AP L L D+
Sbjct: 186 SLVGALLAVGEHRRPVSYCRELL--SATERSSDFAAAPAHGLSLVGVDY 232
>gi|300814956|ref|ZP_07095184.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300510926|gb|EFK38198.1| tRNA pseudouridine synthase A [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 243
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 105/239 (43%), Gaps = 49/239 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +KV Y G ++G+ ++ T+E E+ KA+ T KKE+ GRTD+GV +
Sbjct: 3 ILIKVTYDGTNYHGYQIQNKLK-TIEGELSKAINDTL-----KKETKIYSAGRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQ + Y + I N RV+N LP DI VI P
Sbjct: 57 LGQYVNFYTDTTIDLGNLP--------------------RVINFHLPDDISVISAKEVPF 96
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFC 257
DF ARFS + Y+Y + +L+LS M + K +G+ DF++F
Sbjct: 97 DFHARFSAREKIYRYVVYNNKYRNAIYHNRAYQYPFSLDLSLMNESFKYLIGQKDFKSFM 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
DA V + R + S ++ + N+ +G +FL + +R ++ IG+G
Sbjct: 157 GRDAI-VKDTIRTIYSIKVK------KDNKFIYFDFQGKSFLKNMIRIIMGTAIEIGRG 208
>gi|433643650|ref|YP_007289409.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070008]
gi|432160198|emb|CCK57521.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070008]
Length = 297
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 109/278 (39%), Gaps = 45/278 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ TV ++ AL + GRTD GV + G
Sbjct: 26 LDIAYDGTDFAGWAAQVGQR-TVAGDLDAALTTIF-----RTPVRLRAAGRTDAGVHASG 79
Query: 156 QVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
QV + + ++ + +G+ + + +R L R LP D+R++ + AP
Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGD-------PEFLPLLRRLGRFLPADVRILDITRAPAG 132
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y Y W L+L AM +A + +G HDF FC
Sbjct: 133 FDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFC 192
Query: 258 KM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
+ A + + +R S L + AF W VR +V L ++G+
Sbjct: 193 RHREGATTIRDLQRLDWS----------RAGTLVTAHVTADAFCWSMVRSLVGALLVVGE 242
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL G R + +AP L L D+
Sbjct: 243 HRRATTWCRELLTATG--RSSDFAVAPAHGLTLIQVDY 278
>gi|195569417|ref|XP_002102706.1| GD20050 [Drosophila simulans]
gi|194198633|gb|EDX12209.1| GD20050 [Drosophila simulans]
Length = 411
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 146/345 (42%), Gaps = 56/345 (16%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGR 146
++ A+ + Y G +YG + M+ T+E E+FKA+ K + + D E S + R R
Sbjct: 69 RKKSAILLSYCGANYYGMQRNPGMQ-TIEEELFKAMLKHKWITEDSFEQIQISCFQRAAR 127
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ QV ++ ++ +E+D + N LP+ IR+
Sbjct: 128 TDKGVSAARQVCSV-----------------------KLPEELD-LEAFNADLPQQIRLF 163
Query: 207 GWSPAPTDFSARFSCISREYKYFF-------WRENLN------------LSAMESAGKKF 247
G F+A+ C +R Y Y + E ++ L ++ K +
Sbjct: 164 GVERVTKGFNAKDQCNARTYTYTLPTVAFASFEEKVDDVHDTFRISPELLQKVKETLKLY 223
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G +F NF + + KR + SF S + S + + +K++G +F+ HQ+R MV
Sbjct: 224 EGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMV 283
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
+ I +G + +E L + MAP + LVL + ++ D H+
Sbjct: 284 GLAIAIVRGNTTAATLERALTEERL----DLPMAPGLGLVLDTVHYERYNDRYGKDGIHN 339
Query: 368 LRLHLRNECQVYQ-LQAAIFHEALLNCLPLANGLE-IGSSLIHLH 410
E QV + ++ IF + N L+ IG+ +H H
Sbjct: 340 PLTWQAQEAQVQEFIEREIFSQIYKTEAEQRNMLDWIGT--LHYH 382
>gi|365174491|ref|ZP_09361939.1| tRNA pseudouridine synthase A [Synergistes sp. 3_1_syn1]
gi|363615047|gb|EHL66519.1| tRNA pseudouridine synthase A [Synergistes sp. 3_1_syn1]
Length = 252
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 119/280 (42%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A +V Y G +F+G+ + TV+ + +A+ K + + + + GRTD GV
Sbjct: 3 RYAA-EVSYDGGKFFGWQIQPGLS-TVQRSLEEAVSKI-----NGRHTPVAGAGRTDAGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ QV + + E+ + + +N LP+ + ++ +
Sbjct: 56 HARAQVCSFDM--------------------ERPWEPRRLLLAVNAHLPEGVSLMRAAAV 95
Query: 212 PTDFSARFSCISREYKYFFWR-----------------ENLNLSAMESAGKKFVGEHDFR 254
P DF ARFS REY+YF W + + + A K+ +G HDF+
Sbjct: 96 PGDFHARFSAREREYRYFIWNASAIYPHIKGKACWIKPQRYDWARAAEAAKELLGRHDFK 155
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
NFC+++ H+ R +T + + L ++I+G+ FL + VR ++ L M
Sbjct: 156 NFCRLEGGE-HSTVREITQIRL------IDRRPLVILRIKGNGFLHNMVRIILGNLEMAA 208
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G + I+ LLDT G R P L L +D
Sbjct: 209 LGQITPRQIKELLDTRGSTRSDGGRTFPACGLYLWQISYD 248
>gi|24648455|ref|NP_650899.1| CG4159, isoform A [Drosophila melanogaster]
gi|7300636|gb|AAF55785.1| CG4159, isoform A [Drosophila melanogaster]
Length = 410
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 146/345 (42%), Gaps = 56/345 (16%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGR 146
++ A+ + Y G +YG + M+ T+E E+FKA+ K + + D E S + R R
Sbjct: 69 RKKSAILLSYCGANYYGMQRNPGMQ-TIEEELFKAMLKHKWITEDSFEQIQISCFQRAAR 127
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ QV ++ ++ +E+D + N LP+ IR+
Sbjct: 128 TDKGVSAARQVCSV-----------------------KLPEELD-LEAFNADLPQQIRLF 163
Query: 207 GWSPAPTDFSARFSCISREYKYFF-------WRENLN------------LSAMESAGKKF 247
G F+A+ C +R Y Y + E ++ L ++ K +
Sbjct: 164 GVERVTKGFNAKDQCNARTYTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLY 223
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G +F NF + + KR + SF S + S + + +K++G +F+ HQ+R MV
Sbjct: 224 EGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMV 283
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
+ I +G + +E L + MAP + LVL + ++ D H+
Sbjct: 284 GLAIAIVRGNTTAATLERALTEERL----DLPMAPGLGLVLDTVHYERYNDRYGKDGIHN 339
Query: 368 LRLHLRNECQVYQ-LQAAIFHEALLNCLPLANGLE-IGSSLIHLH 410
E QV + ++ IF + N L+ IG+ +H H
Sbjct: 340 PLTWQAQEAQVQEFIEREIFSQIYKTEAEQRNMLDWIGT--LHYH 382
>gi|374611525|ref|ZP_09684311.1| tRNA pseudouridine synthase A [Mycobacterium tusciae JS617]
gi|373549235|gb|EHP75908.1| tRNA pseudouridine synthase A [Mycobacterium tusciae JS617]
Length = 289
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 116/281 (41%), Gaps = 51/281 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALE---KTRLLVADKKESHYSRCGRTDKGVS 152
L + Y G F G+A+ TV + AL +TRL GRTD GV
Sbjct: 17 LDIAYDGTDFAGWAAQTGQR-TVAGVLDDALSTVFRTRL--------QLRAAGRTDTGVH 67
Query: 153 SVGQVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV + + ++ + A G++ + + V+ L R +P D+RV+ A
Sbjct: 68 ATGQVAHVDVPADALPHAYPRTARPGQS-------EFLPLVQRLARFIPTDVRVLDIGRA 120
Query: 212 PTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFR 254
F ARFS + R Y Y W L++ AM +A + +G HDF
Sbjct: 121 APGFDARFSALRRHYAYRLSTAPYGVEPQEARFVTAWPRPLDVDAMAAASRDLLGLHDFA 180
Query: 255 NFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
FC+ A + + +R IS EG+++ A + AF W VR +V L
Sbjct: 181 AFCRHRDGATTIRDLQR---------LDISREGDRVTA-HVTADAFCWAMVRSVVGALLA 230
Query: 313 IGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G+ +LLD R ++ AP L L S ++
Sbjct: 231 VGEHRREPGWCATLLDATN--RSSEFAAAPPQGLTLVSVEY 269
>gi|291542954|emb|CBL16064.1| pseudouridylate synthase I [Ruminococcus bromii L2-63]
Length = 266
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 110/253 (43%), Gaps = 48/253 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G+ F+G+ N TV+ AL K D K C RTD GV
Sbjct: 11 RNLLLTISYDGKEFHGWQIQQNAM-TVQEAFQTALSKIIGNDFDVKG-----CSRTDSGV 64
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ I++ IK E+++ LNR LP I V+
Sbjct: 65 HANMYCISLKTEHPIKP--------------ERLK------AALNRWLPLSIAVLDCKEV 104
Query: 212 PTDFSARFSCISREYKYFFW----------------RENLNLSAMESAGKKFVGEHDFRN 255
DF AR+SC S+EY Y W R ++ + ++ A + +VG HDF +
Sbjct: 105 APDFHARYSCTSKEYIYKIWNSEVRNPFLDGYALHYRYKIDENLLDKAAQAYVGRHDFTS 164
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +D + R+V +F ++ EG+ L +K+ FL++ VR MV L I Q
Sbjct: 165 FCTLDNREKGDMTRNVKAFSVTR-----EGD-LVTMKVEADGFLYNMVRIMVGTLLRIQQ 218
Query: 316 GLESIDVIESLLD 328
G + D I S+++
Sbjct: 219 GKIAPDEIPSIIE 231
>gi|239624119|ref|ZP_04667150.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522150|gb|EEQ62016.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 249
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 116/277 (41%), Gaps = 57/277 (20%)
Query: 100 YFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIA 159
Y G R+ G+ GN E T++ ++ + LEK D + GRTD GV + GQV
Sbjct: 9 YDGTRYDGWQKQGNTEKTIQGKLERVLEKL-----DGEPVEVRGSGRTDAGVHARGQVAD 63
Query: 160 IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
L+ G+ EE +E LNR LP+DI V AP F +R
Sbjct: 64 FQLK-------------GKRAPEEVME-------YLNRYLPEDIAVWRIQTAPERFHSRL 103
Query: 220 SCISREYKY---------FFWR-------ENLNLSAMESAGKKFVGEHDFRNFC---KMD 260
+ + + Y+Y F R + L++++ME A G DF++FC KM
Sbjct: 104 NAVRKTYRYQIELGPKKDVFRRSYYYGLGQELDVASMERAVAYLTGTRDFKSFCGNKKMK 163
Query: 261 AANVHNYKR-HVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ V + E + +ISF GN FL VR + L +GQG
Sbjct: 164 KSTVRTLESIRFERLEDTRLHISFTGN----------GFLQQMVRILTGTLIEVGQGRRK 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGL 356
+ I S+L+ + R+ AP L L+ ++ L
Sbjct: 214 PEDIRSILEA--LDRQAAGFTAPPEGLFLEKVEYGEL 248
>gi|152996062|ref|YP_001340897.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1]
gi|150836986|gb|ABR70962.1| tRNA pseudouridine synthase A [Marinomonas sp. MWYL1]
Length = 274
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 110/251 (43%), Gaps = 48/251 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L V Y G + G+ + P+V+ LEK ++A+ GRTD GV +
Sbjct: 5 VVLVVEYNGSEYKGWQAQKFGVPSVQEN----LEKALAIIANHPVKVVC-AGRTDSGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV+ + +++ E N ++G +N LP DI V+ SP
Sbjct: 60 SAQVV--HFETDV-ERNERAWTLG-----------------VNTHLPSDITVVAASPVSN 99
Query: 214 DFSARFSCISREYKYFFWR----------------ENLNLSAMESAGKKFVGEHDFRNFC 257
DF ARFS +SR Y+Y + +NL++SAM+ A K F+G HDF +F
Sbjct: 100 DFHARFSALSRRYRYVIYSSDFCPAILSKGITWTYKNLDVSAMKEAAKVFLGTHDFSSF- 158
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+ R + +FE+ + Q + +R +AFL H +R VL IG G
Sbjct: 159 RAVGCQAKTPIRTILNFEVH------QLGQYIVLDVRANAFLHHMIRNFAGVLMSIGAGE 212
Query: 318 ESIDVIESLLD 328
+ + + L+
Sbjct: 213 KPVSWAKQTLE 223
>gi|237786326|ref|YP_002907031.1| tRNA pseudouridine synthase A [Corynebacterium kroppenstedtii DSM
44385]
gi|237759238|gb|ACR18488.1| tRNA pseudouridine synthase A [Corynebacterium kroppenstedtii DSM
44385]
Length = 298
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 116/285 (40%), Gaps = 60/285 (21%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALE-----KTRLLVADKKESHYSRCGRTDKG 150
L + Y G F+G+A ++ +V+ +I +A + +L+VA GRTD G
Sbjct: 27 LDIAYDGTDFHGWARQNDVR-SVQGDIEQAFQTVVRQPVQLVVA----------GRTDAG 75
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQV + + I NT + D V R+L D+R+ G S
Sbjct: 76 VHASGQVAHVDIPRGI--LNTRSIH----------NDPSTLVSRFARLLRPDVRIRGCSF 123
Query: 211 APTDFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDF 253
AP F ARFS + R Y Y W +NL +M +A + VG HDF
Sbjct: 124 APDGFDARFSALRRHYVYRVTTNRAGALPTRARDTAVWDRPVNLDSMNNAAEVLVGLHDF 183
Query: 254 RNFCKMDA-----ANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVA 308
FC+ ++ ++ H S + P + ++ AF W+ VR +V
Sbjct: 184 AAFCRARPHATTIRDLQHFSWHEVSTAVEP--------DVYEARVTADAFCWNMVRSIVG 235
Query: 309 VLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G+G +E +L + R P +AP L L D+
Sbjct: 236 ASLAVGEGKRPDGFMEDMLAHDS--RHPMVPVAPANGLTLTGVDY 278
>gi|56961964|ref|YP_173686.1| pseudouridylate synthase [Bacillus clausii KSM-K16]
gi|62901228|sp|Q5WLN0.1|TRUA_BACSK RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56908198|dbj|BAD62725.1| pseudouridylate synthase I [Bacillus clausii KSM-K16]
Length = 261
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 122/279 (43%), Gaps = 56/279 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+A K+ Y G F G+ ++P TV+SE+ +AL++ + GRTD G
Sbjct: 4 MACKLSYDGTAFAGY----QVQPGKRTVQSEVERALQE----IHKGARVPVVASGRTDAG 55
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQV+ + + + T+ E+ +V LN LP DI V +
Sbjct: 56 VHACGQVL--HFDTEL------------TIAPER------WVSALNTHLPDDIVVTNAAM 95
Query: 211 APTDFSARFSCISREYKYFFW----------------RENLNLSAMESAGKKFVGEHDFR 254
DF AR+ ++EY+Y+ ++ L++ AM++A K +G HDF
Sbjct: 96 VEPDFHARYGAQAKEYRYYIQCGPFENVFRRHFAVHIKQALDVPAMQTAAKHLLGTHDFS 155
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
FC + V + R +T + P S EG I IRG+ FL++ VR +V L IG
Sbjct: 156 AFCAAN-TTVTDKVRTITHVAVQP---SEEG---LLISIRGTGFLYNMVRIIVGTLLEIG 208
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G ++ +L G R AP L L D+
Sbjct: 209 TGKRVASEMKVIL--AGKSRNLAGKTAPAHGLCLYEVDY 245
>gi|327283197|ref|XP_003226328.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Anolis carolinensis]
Length = 406
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 131/287 (45%), Gaps = 51/287 (17%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L V Y G+ ++G + GN + T+E ++ AL ++ + D K+ + RC
Sbjct: 60 KRKIVLLVAYSGKGYHGMQRNVGNSQFKTIEDDLVLALIQSGCIPENHGEDMKKMSFQRC 119
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQ++++ + IE D ++ +N LP IR
Sbjct: 120 ARTDKGVSAAGQIVSLKVW--------------------LIE---DILQKINNHLPPHIR 156
Query: 205 VIGWSPAPTDFSARFSCISREYKY------FFWRE--------NLNLSAMESAGK---KF 247
++G F+++ C +R Y Y F ++ +LN + + + +
Sbjct: 157 ILGLKRVTGGFNSKNKCDARTYSYMLPTFAFAHKDCDFQDHTFHLNTETLATVNRLLAGY 216
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + KR++ ++ +G + +K++G +F+ HQ+R M+
Sbjct: 217 KGTHNFHNFTSQKGPKDPSAKRYIMEMYCEEPFVR-QGMEFAVMKVKGQSFMMHQIRKMI 275
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
++ I +G S ES+++ + K AP + LVL+ F+
Sbjct: 276 GLVIAIVKGYAS----ESIMEQSWGEEKVDVPKAPGLGLVLERVHFE 318
>gi|449679562|ref|XP_002163885.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Hydra
magnipapillata]
Length = 434
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/323 (24%), Positives = 143/323 (44%), Gaps = 56/323 (17%)
Query: 43 EKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHF--KRYVALKVMY 100
EK++ +++ + + L +E KT + KT + K + F KR VAL + Y
Sbjct: 41 EKVDAEINKRILEDGELPDELEKTVT--TKTNITEAKPNIVKEFKADFSRKRKVALLLAY 98
Query: 101 FGQRFYGFASDGNMEPTVESEIFKAL---------EKTRLLVADKKESHYSRCGRTDKGV 151
G + G + ++E T+E ++ AL K LV + + + R RTDKGV
Sbjct: 99 CGANYSGMQKNPDVE-TIEEKLLDALCEMKAIRAEHKHEFLVNNVNQISFQRAARTDKGV 157
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
S+ Q +++ L ++ NT ++ +N++LP DIRV G
Sbjct: 158 SAARQTVSLKLVAS----NT-------------------FLEDVNKLLPDDIRVFGLERV 194
Query: 212 PTDFSARFSCISREYKY------FFWRENLNLSAMESAGKKFV----------GEHDFRN 255
F+A+ C R Y+Y F ++ + + ++F G H+F N
Sbjct: 195 TKSFNAKCCCSGRAYEYLIPSFAFAPSNDVFSPSYRISDEQFAKLNRLFSCYEGTHNFHN 254
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F + + R++ SF+ + + +G++ AI+I G +F+ HQ+R M+ ++ + +
Sbjct: 255 FTSGKPFSDQSANRYIISFKANKPF-ECQGHEFIAIEISGQSFMIHQIRKMIGLVIAVCR 313
Query: 316 GLESIDVIES--LLDTNGIPRKP 336
G D IE L IP+ P
Sbjct: 314 GHCPEDTIEKSWLQAKADIPKAP 336
>gi|281362146|ref|NP_001163664.1| CG4159, isoform B [Drosophila melanogaster]
gi|272477072|gb|ACZ94960.1| CG4159, isoform B [Drosophila melanogaster]
Length = 442
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 146/345 (42%), Gaps = 56/345 (16%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGR 146
++ A+ + Y G +YG + M+ T+E E+FKA+ K + + D E S + R R
Sbjct: 101 RKKSAILLSYCGANYYGMQRNPGMQ-TIEEELFKAMLKHKWITEDSFEQIQISCFQRAAR 159
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ QV ++ ++ +E+D + N LP+ IR+
Sbjct: 160 TDKGVSAARQVCSV-----------------------KLPEELD-LEAFNADLPQQIRLF 195
Query: 207 GWSPAPTDFSARFSCISREYKYFF-------WRENLN------------LSAMESAGKKF 247
G F+A+ C +R Y Y + E ++ L ++ K +
Sbjct: 196 GVERVTKGFNAKDQCNARTYTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLY 255
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G +F NF + + KR + SF S + S + + +K++G +F+ HQ+R MV
Sbjct: 256 EGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMV 315
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
+ I +G + +E L + MAP + LVL + ++ D H+
Sbjct: 316 GLAIAIVRGNTTAATLERALTEERL----DLPMAPGLGLVLDTVHYERYNDRYGKDGIHN 371
Query: 368 LRLHLRNECQVYQ-LQAAIFHEALLNCLPLANGLE-IGSSLIHLH 410
E QV + ++ IF + N L+ IG+ +H H
Sbjct: 372 PLTWQAQEAQVQEFIEREIFSQIYKTEAEQRNMLDWIGT--LHYH 414
>gi|72163015|ref|YP_290672.1| tRNA pseudouridine synthase A [Thermobifida fusca YX]
gi|71916747|gb|AAZ56649.1| tRNA pseudouridine synthase [Thermobifida fusca YX]
Length = 296
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 107/265 (40%), Gaps = 48/265 (18%)
Query: 70 GCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKT 129
G + G + +GT+ + L + Y G F G+A TV+ E+ AL +
Sbjct: 3 GSRQGAGHLSWTETGTVTDETLTRLRLDISYDGTDFSGWAEQPGRR-TVQGELQAALAR- 60
Query: 130 RLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEI 189
V + GRTD GV + GQV + + +++ E GE +
Sbjct: 61 ---VLRIPTPQLTVAGRTDAGVHARGQVAHVDVPASVWEAE------GERL--------- 102
Query: 190 DYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKY----------------FFW-R 232
+R L VLP D+RV +PAP F ARFS + R Y Y W R
Sbjct: 103 --LRRLAGVLPPDVRVTAVAPAPPGFDARFSALFRRYVYRVSDAPGGVDPLRRHEVLWHR 160
Query: 233 ENLNLSAMESAGKKFVGEHDFRNFC-KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAI 291
L++ M A +GEHDF +C K + A+ T E+ E + A
Sbjct: 161 RPLDVDRMNEAAAALLGEHDFAAYCRKREGAS--------TVRELQRLEWRRESEHVYAA 212
Query: 292 KIRGSAFLWHQVRCMVAVLFMIGQG 316
++ AF + VR +V L +G G
Sbjct: 213 TVQADAFCHNMVRALVGALLAVGDG 237
>gi|167032538|ref|YP_001667769.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1]
gi|166859026|gb|ABY97433.1| tRNA pseudouridine synthase A [Pseudomonas putida GB-1]
Length = 286
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 103/255 (40%), Gaps = 56/255 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ + +AL K VA++ S GRTD GV
Sbjct: 21 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSK----VANEPISVIC-AGRTDAGVHG 75
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQ++ R+ + DE + N LP DI V+ P P
Sbjct: 76 CGQIVHFDTRA--------------------VRDERAWTMGTNFNLPHDISVVWSQPMPA 115
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
DF ARF +R Y+Y + + L++ M A + +G HDF F
Sbjct: 116 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVERMAEAAQFLLGTHDFSAFR 175
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H Y VT Q+ + +R +AFL H VR + VL I
Sbjct: 176 ASQCQAKSPIKHIYHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMAI 224
Query: 314 GQGLESIDVIESLLD 328
G G + +L+
Sbjct: 225 GAGERPVTWAREVLE 239
>gi|433632553|ref|YP_007266181.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070010]
gi|432164146|emb|CCK61593.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070010]
Length = 297
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 108/278 (38%), Gaps = 45/278 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ TV ++ AL + GRTD GV + G
Sbjct: 26 LDIAYDGTDFAGWAAQVGQR-TVAGDLDAALTTIF-----RTPVRLRAAGRTDAGVHASG 79
Query: 156 QVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
QV + + ++ + +G+ + + +R L R LP D+R++ + AP
Sbjct: 80 QVAHVDVPADALPNAYPRAGHIGD-------PEFLPLLRRLGRFLPADVRILDITRAPAG 132
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y Y W L+L AM +A + +G HDF FC
Sbjct: 133 FDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFC 192
Query: 258 KM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
+ A + + +R S L + AF W VR +V L +G+
Sbjct: 193 RHREGATTIRDLQRLDWS----------RAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 242
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL G R + +AP L L D+
Sbjct: 243 HRRATTWCRELLTATG--RSSDFAVAPAHGLTLIQVDY 278
>gi|372099929|gb|AEX66197.1| FI18513p1 [Drosophila melanogaster]
Length = 467
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 146/345 (42%), Gaps = 56/345 (16%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGR 146
++ A+ + Y G +YG + M+ T+E E+FKA+ K + + D E S + R R
Sbjct: 126 RKKSAILLSYCGANYYGMQRNPGMQ-TIEEELFKAMLKHKWITEDSFEQIQISCFQRAAR 184
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ QV ++ ++ +E+D + N LP+ IR+
Sbjct: 185 TDKGVSAARQVCSV-----------------------KLPEELD-LEAFNADLPQQIRLF 220
Query: 207 GWSPAPTDFSARFSCISREYKYFF-------WRENLN------------LSAMESAGKKF 247
G F+A+ C +R Y Y + E ++ L ++ K +
Sbjct: 221 GVERVTKGFNAKDQCNARTYTYTLPTVAFAPFEEKVDDVHDTFRISPELLQKVKETLKLY 280
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G +F NF + + KR + SF S + S + + +K++G +F+ HQ+R MV
Sbjct: 281 EGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMV 340
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
+ I +G + +E L + MAP + LVL + ++ D H+
Sbjct: 341 GLAIAIVRGNTTAATLERALTEERL----DLPMAPGLGLVLDTVHYERYNDRYGKDGIHN 396
Query: 368 LRLHLRNECQVYQ-LQAAIFHEALLNCLPLANGLE-IGSSLIHLH 410
E QV + ++ IF + N L+ IG+ +H H
Sbjct: 397 PLTWQAQEAQVQEFIEREIFSQIYKTEAEQRNMLDWIGT--LHYH 439
>gi|325675475|ref|ZP_08155159.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707]
gi|325553446|gb|EGD23124.1| tRNA pseudouridine synthase A [Rhodococcus equi ATCC 33707]
Length = 296
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 118/280 (42%), Gaps = 60/280 (21%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEI---FKALEKTRLLVADKKESHYSRCGRTDKGVS 152
L + Y G F G+A TV EI A+ +T +L+ + GRTD GV
Sbjct: 25 LDISYDGTDFSGWARQPGRR-TVCGEIEEKLSAIVRTPVLL--------TVAGRTDAGVH 75
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQV + + +++ + EE VR L R LP+D+RV S AP
Sbjct: 76 ASGQVAHVDVPADM-------------IPEEPSR----LVRRLARFLPRDVRVKAVSFAP 118
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARFS I R Y+Y W +++++ AM A + +G HDF
Sbjct: 119 EHFDARFSAIRRHYEYRLTTAPYGAEPLRARDTVAWPKDVDVDAMRKASSRLLGLHDFAA 178
Query: 256 FCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
FCK A V +R +E S G++L A + AF W VR +V +
Sbjct: 179 FCKRREGATTVRELQRF--DWEQS-------GHELTAF-VSADAFCWSMVRSLVGAALAV 228
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G+G +++ + LL R +AP L L D+
Sbjct: 229 GEGRRTVEWMAGLLAER--ERASAVAVAPAHGLSLIRVDY 266
>gi|441472390|emb|CCQ22145.1| tRNA pseudouridine synthase A [Listeria monocytogenes]
gi|441475533|emb|CCQ25287.1| tRNA pseudouridine synthase A [Listeria monocytogenes N53-1]
Length = 248
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 121/280 (43%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALTK----MHKGKTVRVTASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQVMTPFDISFLTVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L++ M+ A K+ +GEHDF +
Sbjct: 97 PDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDILKMKLASKRLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 G-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G + D+ E+LL + +K AP L L D++
Sbjct: 211 GRISPDDISEALLARD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|397693259|ref|YP_006531139.1| tRNA pseudouridine synthase A [Pseudomonas putida DOT-T1E]
gi|397329989|gb|AFO46348.1| tRNA pseudouridine synthase A [Pseudomonas putida DOT-T1E]
Length = 284
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 56/255 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ + +AL K VA++ S GRTD GV
Sbjct: 19 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSK----VANEPISVVC-AGRTDAGVHG 73
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ R+ + DE + N LP DI V+ P P
Sbjct: 74 CGQVVHFDTRA--------------------VRDERAWTMGTNFNLPHDISVVWSRPMPA 113
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
DF ARF +R Y+Y + + L++ M A + +G HDF F
Sbjct: 114 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVDRMAEAAQFLLGTHDFSAFR 173
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H Y VT Q+ + +R +AFL H VR + VL I
Sbjct: 174 ASQCQAKSPIKHVYHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMAI 222
Query: 314 GQGLESIDVIESLLD 328
G G + +L+
Sbjct: 223 GAGERPVAWAREVLE 237
>gi|433628597|ref|YP_007262226.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140060008]
gi|432156203|emb|CCK53461.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140060008]
Length = 297
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 108/278 (38%), Gaps = 45/278 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ TV ++ AL + GRTD GV + G
Sbjct: 26 LDIAYDGTDFAGWAAQVGQR-TVAGDLDAALTTIF-----RTPVRLRAAGRTDAGVHASG 79
Query: 156 QVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
QV + + ++ + +G+ + + +R L R LP D+R++ + AP
Sbjct: 80 QVAHVDVPADALPNAYPRAGHIGD-------PEFLPLLRRLGRFLPADVRILDITRAPAG 132
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y Y W L+L AM +A + +G HDF FC
Sbjct: 133 FDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFC 192
Query: 258 KM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
+ A + + +R S L + AF W VR +V L +G+
Sbjct: 193 RHREGATTIRDLQRLDWS----------RAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 242
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL G R + +AP L L D+
Sbjct: 243 HRRATTWCRELLTATG--RSSDFAVAPAHGLTLIQVDY 278
>gi|50756277|ref|XP_415090.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Gallus
gallus]
Length = 409
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 128/289 (44%), Gaps = 55/289 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL ++ + D K+ + RC
Sbjct: 63 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVRSGCIPENHGEDMKKMSFQRC 122
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQ++++ +R + D+I + +N LP IR
Sbjct: 123 ARTDKGVSAAGQIVSLKVR---------------------LIDDI--LEKINNHLPSHIR 159
Query: 205 VIGWSPAPTDFSARFSCISREYKYF-------------------FWRENLNLSAMESAGK 245
++G F+++ C +R Y Y RE L + S
Sbjct: 160 ILGLKRVTGGFNSKNKCDARTYAYMLPTFAFAHKDHDVQEEAHRLSRE--TLEKVNSLLA 217
Query: 246 KFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRC 305
++ G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R
Sbjct: 218 RYKGTHNFHNFTSQKGPKDPSARRYIMEMYCGEPFVR-EGIEFAVIKVKGQSFMMHQIRK 276
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
M+ ++ I +G ES+++ + K AP + LVL+ F+
Sbjct: 277 MIGLVIAIVKGYAP----ESIIERSWGEEKVDVPKAPGLGLVLERVHFE 321
>gi|421522277|ref|ZP_15968919.1| tRNA pseudouridine synthase A [Pseudomonas putida LS46]
gi|402753896|gb|EJX14388.1| tRNA pseudouridine synthase A [Pseudomonas putida LS46]
Length = 284
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 56/255 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ + +AL K VA++ S GRTD GV
Sbjct: 19 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSK----VANEPISVVC-AGRTDAGVHG 73
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ R+ + DE + N LP DI V+ P P
Sbjct: 74 CGQVVHFDTRA--------------------VRDERAWTMGTNFNLPHDISVVWSRPMPA 113
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
DF ARF +R Y+Y + + L++ M A + +G HDF F
Sbjct: 114 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVDRMAEAAQFLLGTHDFSAFR 173
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H Y VT Q+ + +R +AFL H VR + VL I
Sbjct: 174 ASQCQAKSPIKHIYHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMAI 222
Query: 314 GQGLESIDVIESLLD 328
G G + +L+
Sbjct: 223 GAGERPVAWAHEVLE 237
>gi|187478755|ref|YP_786779.1| tRNA pseudouridine synthase A [Bordetella avium 197N]
gi|123738625|sp|Q2KYM0.1|TRUA_BORA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|115423341|emb|CAJ49875.1| tRNA pseudouridine synthase A [Bordetella avium 197N]
Length = 267
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 97/235 (41%), Gaps = 50/235 (21%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDI 203
GRTD GV + QV+ + N + + +VR +N LP I
Sbjct: 50 AGRTDTGVHAAMQVVHVDTHLNRRAES--------------------WVRGVNAFLPSSI 89
Query: 204 RVIGWSPAPTDFSARFSCISREYKYFFWR----------------ENLNLSAMESAGKKF 247
+ DF ARFS SR Y Y WR + L+++AM A +
Sbjct: 90 SIHWAKEVGEDFHARFSARSRTYVYLLWRGRVRPALWAHRAGWCFQPLDVTAMRQAAQAL 149
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
+GEHDF +F H RH+T +I+ E ++ +AFL H VR ++
Sbjct: 150 LGEHDFSSFRSSQCQARHPV-RHLTRLDIA------ERGSFLVFTLQANAFLHHMVRNIM 202
Query: 308 AVLFMIGQGLESIDVIESLLDTN----GIPR-KPQ--YNMAPEIPLVLQSCDFDG 355
L IGQG ES+D + SLL G P P Y A + P + + D DG
Sbjct: 203 GALLQIGQGRESVDWMASLLRARDRRLGAPTFSPDGLYLSAIDYPTLFELPDLDG 257
>gi|403510182|ref|YP_006641820.1| tRNA pseudouridine(38-40) synthase [Nocardiopsis alba ATCC
BAA-2165]
gi|402802086|gb|AFR09496.1| tRNA pseudouridine(38-40) synthase [Nocardiopsis alba ATCC
BAA-2165]
Length = 308
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 103/249 (41%), Gaps = 46/249 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ TV+ E+ AL K L E+ + GRTD GV + G
Sbjct: 39 LDISYDGTDFSGWATQPTRR-TVQGELESALAKVLRL----PEASVTCAGRTDAGVHARG 93
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + A GE V +R L VLPKD+RV G AP F
Sbjct: 94 QVAQLDVPAR------TWAEEGERV-----------LRRLAGVLPKDVRVSGVRLAPPGF 136
Query: 216 SARFSCISREYKY----------------FFW-RENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y Y W R L++ M A + VGEHDF FCK
Sbjct: 137 DARFSPLFRRYVYRVSDAPYGVEPLRRRDVLWHRRPLDVDRMNEAAARLVGEHDFAAFCK 196
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ T E+ E L A I+ AF + VR +V L +G G
Sbjct: 197 -------KREGATTIRELLRLEWRREEEHLLAGTIQADAFCHNMVRALVGALLAVGDGRH 249
Query: 319 SIDVIESLL 327
++ ++L
Sbjct: 250 GVEWPATVL 258
>gi|241890020|ref|ZP_04777318.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379]
gi|241863642|gb|EER68026.1| tRNA pseudouridine synthase A [Gemella haemolysans ATCC 10379]
Length = 265
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 114/256 (44%), Gaps = 56/256 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L Y G ++GF N T++ EI K+L+K +KK+ GRTD GV +
Sbjct: 3 VVLLCRYDGSNYHGFQIQPN-NNTIQEEIEKSLKKI-----NKKDVRLYMSGRTDSGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ NI DE +V+ LN +PKDIR++G + A
Sbjct: 57 YGQVLHFDTDLNI-------------------PDEA-WVKALNATIPKDIRIVGATSASE 96
Query: 214 DFSARFSCISREYKY--FFWRE--------------NLNLSAMESAGKKFVGEHDFRNFC 257
DF R++ + Y Y RE + N + A + F+GEHDF +FC
Sbjct: 97 DFHVRYNSTQKTYYYKLHIGREVDPFLLNYVGKHSFDFNFEKAQEALQYFIGEHDFSSFC 156
Query: 258 KMDAANVHNYKRHVTSFE-----ISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
+++ V + R + S I+P ++FE I G+ FL++ VR ++ +
Sbjct: 157 SKNSS-VEDKVRTIYSLTMEKDLINPNIVNFE--------ITGNGFLYNMVRIIIGTIQN 207
Query: 313 IGQGLESIDVIESLLD 328
+ G + ++ +L+
Sbjct: 208 VAAGKYEANYVKEILE 223
>gi|336400024|ref|ZP_08580812.1| tRNA pseudouridine synthase A [Fusobacterium sp. 21_1A]
gi|336163221|gb|EGN66153.1| tRNA pseudouridine synthase A [Fusobacterium sp. 21_1A]
Length = 245
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 115/274 (41%), Gaps = 48/274 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ ++ Y G R+YGF N + TV+ EI K L + K+E + GRTD+GV +
Sbjct: 6 IKIEFRYDGSRYYGFQRQPN-KITVQGEIEKILR-----IVTKEEINLISAGRTDRGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV Y S I IE Y +L R LPKDI ++
Sbjct: 60 NHQVSNFYTSSTI-----------------PIEK---YKYLLTRALPKDIDILSVEEVDE 99
Query: 214 DFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
+F+AR + REY Y F +E +++ +E FVG HDF+NF
Sbjct: 100 NFNARHNAKMREYIYIISWAKNPFEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLN 159
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
D + VT +I + + G I I+GSAFL QVR MV I G
Sbjct: 160 DCVS------KVTIRKIYQIEVKYFGESKIKIYIKGSAFLKSQVRIMVGAALEIYYGRLP 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ I +L N R+ + N+ L L ++
Sbjct: 214 ENHIRLML--NDFTREYKKNLVEAEGLYLNKINY 245
>gi|386013194|ref|YP_005931471.1| TruA [Pseudomonas putida BIRD-1]
gi|313499900|gb|ADR61266.1| TruA [Pseudomonas putida BIRD-1]
Length = 284
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 56/255 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ + +AL K VA++ S GRTD GV
Sbjct: 19 IALGVEYKGARYRGWQRQASGVPSVQQALEQALSK----VANEPISVIC-AGRTDAGVHG 73
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ R+ + DE + N LP DI V+ P P
Sbjct: 74 CGQVVHFDTRA--------------------VRDERAWTMGTNFNLPHDISVVWSRPMPA 113
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
DF ARF +R Y+Y + + L++ M A + +G HDF F
Sbjct: 114 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVDRMAEAAQFLLGTHDFSAFR 173
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H Y VT Q+ + +R +AFL H VR + VL I
Sbjct: 174 ASQCQAKSPIKHIYHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMAI 222
Query: 314 GQGLESIDVIESLLD 328
G G + +L+
Sbjct: 223 GAGERPVAWAREVLE 237
>gi|195353947|ref|XP_002043463.1| GM23177 [Drosophila sechellia]
gi|194127604|gb|EDW49647.1| GM23177 [Drosophila sechellia]
Length = 411
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 145/345 (42%), Gaps = 56/345 (16%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGR 146
++ A+ + Y G +YG + M+ T+E E+FKA+ K + + D E S + R R
Sbjct: 69 RKKSAILLSYCGANYYGMQRNPGMQ-TIEEELFKAMLKHKWITEDSFEQIQISCFQRAAR 127
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ QV ++ ++ +E+D + N LP+ IR+
Sbjct: 128 TDKGVSAARQVCSV-----------------------KLPEELD-LEAFNADLPQQIRLF 163
Query: 207 GWSPAPTDFSARFSCISREYKYFF-------WRENLN------------LSAMESAGKKF 247
G F+A+ C +R Y Y + E + L ++ K +
Sbjct: 164 GVERVTKGFNAKDQCNARTYTYTLPTVAFASFEEQVEDVHDTFRISPELLQKVKETLKLY 223
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G +F NF + + KR + SF S + S + + +K++G +F+ HQ+R MV
Sbjct: 224 EGTKNFHNFTSKKSFLDPSSKRFIMSFTSSEPFRSPQDIEFVTLKVKGQSFMLHQIRKMV 283
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
+ I +G + +E L + MAP + LVL + ++ D H+
Sbjct: 284 GLAIAIVRGNTTAATLERALTEERL----DLPMAPGLGLVLDTVHYERYNDRYGKDGIHN 339
Query: 368 LRLHLRNECQVYQ-LQAAIFHEALLNCLPLANGLE-IGSSLIHLH 410
E QV + ++ IF + N L+ IG+ +H H
Sbjct: 340 SLTWQAQEAQVQEFIEREIFSQIYKTEAEQRNMLDWIGT--LHYH 382
>gi|15843050|ref|NP_338087.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CDC1551]
gi|148824665|ref|YP_001289419.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis F11]
gi|161511525|ref|NP_857124.2| tRNA pseudouridine synthase A [Mycobacterium bovis AF2122/97]
gi|253800500|ref|YP_003033501.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN 1435]
gi|254234047|ref|ZP_04927372.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis C]
gi|254366056|ref|ZP_04982101.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis str.
Haarlem]
gi|289747288|ref|ZP_06506666.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
02_1987]
gi|298526939|ref|ZP_07014348.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis
94_M4241A]
gi|308377357|ref|ZP_07441941.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu008]
gi|308378330|ref|ZP_07482228.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu009]
gi|308379519|ref|ZP_07668975.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu010]
gi|375297726|ref|YP_005101993.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN 4207]
gi|383309182|ref|YP_005361993.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis RGTB327]
gi|386000244|ref|YP_005918543.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CTRI-2]
gi|392388058|ref|YP_005309687.1| truA [Mycobacterium tuberculosis UT205]
gi|392433938|ref|YP_006474982.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN 605]
gi|397675409|ref|YP_006516944.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Rv]
gi|54039781|sp|P65847.1|TRUA_MYCBO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|54042086|sp|P65846.1|TRUA_MYCTU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|13883394|gb|AAK47901.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CDC1551]
gi|124599576|gb|EAY58680.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis C]
gi|134151569|gb|EBA43614.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis str.
Haarlem]
gi|148723192|gb|ABR07817.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis F11]
gi|253322003|gb|ACT26606.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN
1435]
gi|289687816|gb|EFD55304.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
02_1987]
gi|298496733|gb|EFI32027.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis
94_M4241A]
gi|308348190|gb|EFP37041.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu008]
gi|308352914|gb|EFP41765.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu009]
gi|308356757|gb|EFP45608.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu010]
gi|328460231|gb|AEB05654.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN
4207]
gi|344221291|gb|AEN01922.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CTRI-2]
gi|378546609|emb|CCE38888.1| truA [Mycobacterium tuberculosis UT205]
gi|380723135|gb|AFE18244.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis RGTB327]
gi|392055347|gb|AFM50905.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis KZN
605]
gi|395140314|gb|AFN51473.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Rv]
Length = 297
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 108/278 (38%), Gaps = 45/278 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ TV ++ AL + GRTD GV + G
Sbjct: 26 LDIAYDGTDFAGWAAQVGQR-TVAGDLDAALTTIF-----RTPVRLRAAGRTDAGVHASG 79
Query: 156 QVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
QV + + ++ + +G+ + + +R L R LP D+R++ + AP
Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGD-------PEFLPLLRRLGRFLPADVRILDITRAPAG 132
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y Y W L+L AM +A + +G HDF FC
Sbjct: 133 FDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFC 192
Query: 258 KM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
+ A + + +R S L + AF W VR +V L +G+
Sbjct: 193 RHREGATTIRDLQRLDWS----------RAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 242
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL G R + +AP L L D+
Sbjct: 243 HRRATTWCRELLTATG--RSSDFAVAPAHGLTLIQVDY 278
>gi|223935594|ref|ZP_03627510.1| tRNA pseudouridine synthase A [bacterium Ellin514]
gi|223895602|gb|EEF62047.1| tRNA pseudouridine synthase A [bacterium Ellin514]
Length = 270
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 95/219 (43%), Gaps = 41/219 (18%)
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTD GV ++G V A M E ++ E +N LP+DIRV
Sbjct: 52 RTDTGVHAIGMV----------------AHMEIPKAEFRMTSE-KLALAINAHLPEDIRV 94
Query: 206 IGWSPAPTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVG 249
+ DF ARF ++Y+YF W + L+L AM SA K F G
Sbjct: 95 MSAQKVAADFHARFDAAGKQYRYFVWNQTAMNPLLREQAWQVPKELDLKAMRSAAKLFPG 154
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
+HDFR+F A NY+ T ++ C I G+ L I I G FL+ R +V
Sbjct: 155 KHDFRSF-----AASRNYEVESTVRTLARCDIKKSGSLLTFI-IEGDGFLYKMCRGIVGT 208
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
L +GQG + I+ +L+T R+ AP LVL
Sbjct: 209 LVQVGQGKIAAADIKKILETR--DRRVAGMTAPAHGLVL 245
>gi|257784931|ref|YP_003180148.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469]
gi|257473438|gb|ACV51557.1| tRNA pseudouridine synthase A [Atopobium parvulum DSM 20469]
Length = 294
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 115/250 (46%), Gaps = 41/250 (16%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +K+ Y G F GFA + + +V ++ +ALE ++E + GRTD GV +
Sbjct: 38 LVIKLGYRGAAFCGFA-EQPTQRSVAGDLRRALETVL-----RREVELTCAGRTDAGVHA 91
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
Q +++ + + + + GE + VR L + DI + AP
Sbjct: 92 QVQYVSLPVY------DADLSFSGEKL-----------VRSLTALTDDDISIRQLFRAPQ 134
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
FSARF +R Y+Y +++ +L+ M+ A + VGEHDF++FC
Sbjct: 135 GFSARFDAQARSYRYRICADSARPILGWDHVWWYNGHLDADLMDKAAQALVGEHDFKSFC 194
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
K +A R V + I G +L A+ I G+AFL + VR +V L IG+G
Sbjct: 195 KAISAEGKPTHRFVERLSVEE--IEEAGEKLIAVDITGNAFLHNMVRTIVGTLVEIGRGH 252
Query: 318 ESIDVIESLL 327
++ I+ +L
Sbjct: 253 RPVEWIDEVL 262
>gi|405756718|ref|YP_006680182.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2540]
gi|404225918|emb|CBY77280.1| tRNA pseudouridine synthase A [Listeria monocytogenes SLCC2540]
Length = 248
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 121/280 (43%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALTK----MHKGKTVRITASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQVMTPFDISFLTVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L++S M+ A K+ +GEHDF +
Sbjct: 97 PDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 G-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ D+ E+LL + +K AP L L D++
Sbjct: 211 DRISPDDISEALLARDR--QKLISKTAPPQGLYLWRVDYE 248
>gi|256087150|ref|XP_002579739.1| pseudouridylate synthase [Schistosoma mansoni]
gi|350644399|emb|CCD60868.1| pseudouridylate synthase, putative [Schistosoma mansoni]
Length = 369
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/281 (25%), Positives = 118/281 (41%), Gaps = 57/281 (20%)
Query: 99 MYFGQRFYGFASDGNMEPTVESEIFKAL----EKTRLLVADKKESHYSRCGRTDKGVSSV 154
MY G +YG + PT+E E+ KAL + L + K H+ R +TDK VS++
Sbjct: 1 MYSGWGYYGMQR-CPVFPTIEGELSKALFTCGQLDNLTSEEHKRVHFQRASKTDKSVSAL 59
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQV ++ Q++++ D + LN LP++IRV+
Sbjct: 60 GQVCSM-----------------------QLKEDTDLLSKLNNSLPENIRVLDIIRVTRG 96
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGK---KFVGEHDFR 254
FS+ SC R Y Y W L + + + K+ G H+F
Sbjct: 97 FSSYSSCTHRIYDYLLPTFALSPATSSLNDSTCWTYRLTVEQITQVNRLLEKYKGTHNFY 156
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
NF + R++ S E P ++ E +Q I+I G +F+ HQ+R M+ + +
Sbjct: 157 NFTSGRLVTDRSCSRYIISAECMPTFLLGE-HQYTIIRIAGQSFMLHQIRKMIGLALAVL 215
Query: 315 QGLESIDVIESLLDTN--GIPRKPQYNMAPEIPLVLQSCDF 353
+G + V + + IP+ AP + L+L DF
Sbjct: 216 RGYATEAVFDIVFSKARIDIPK------APGLGLMLNQVDF 250
>gi|296394888|ref|YP_003659772.1| tRNA pseudouridine synthase A [Segniliparus rotundus DSM 44985]
gi|296182035|gb|ADG98941.1| tRNA pseudouridine synthase A [Segniliparus rotundus DSM 44985]
Length = 278
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 111/277 (40%), Gaps = 52/277 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L V Y G F G+A TV I +AL LL + + + GRTD GV + G
Sbjct: 13 LDVAYDGTEFSGWARQPGRR-TVAGVIEEALST--LL---QSSAQLTVAGRTDAGVHATG 66
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + +R+++ + + E++ VR L R+LP D+RV+ F
Sbjct: 67 QVAHVDVRADL---------VSGRLPPEKL------VRKLARMLPTDVRVLSAQKVSAQF 111
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC- 257
ARFS + R Y+Y W L+ + +A VG HDF FC
Sbjct: 112 DARFSALRRHYRYHITRSVYGADPLRAREVVPWARPLDFDVLNAASSALVGLHDFAAFCR 171
Query: 258 -KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ A + +R FE + E L I AF W R +V + + +G
Sbjct: 172 PRPGATTIRELQR----FEWA------ESGVLITASITADAFCWSMCRSLVGAVTAVAEG 221
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ I SLL + R + +AP L L D+
Sbjct: 222 RRDLAWIRSLLTASS--RASEITVAPAHGLCLVGVDY 256
>gi|417796017|ref|ZP_12443234.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21305]
gi|334270430|gb|EGL88835.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21305]
Length = 267
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 118/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTDLNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ RK AP L L+ D + D G+D+++HL+ Q
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHLKKSLQ 265
>gi|308371354|ref|ZP_07424662.2| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu003]
gi|308372553|ref|ZP_07667408.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu004]
gi|308373747|ref|ZP_07667643.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu005]
gi|308374881|ref|ZP_07667891.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu006]
gi|308380705|ref|ZP_07669261.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu011]
gi|308406162|ref|ZP_07669527.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu012]
gi|422814687|ref|ZP_16862910.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CDC1551A]
gi|308329092|gb|EFP17943.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu003]
gi|308332900|gb|EFP21751.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu004]
gi|308336560|gb|EFP25411.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu005]
gi|308340435|gb|EFP29286.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu006]
gi|308360702|gb|EFP49553.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu011]
gi|308364317|gb|EFP53168.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu012]
gi|323717939|gb|EGB27128.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CDC1551A]
Length = 303
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 108/278 (38%), Gaps = 45/278 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ TV ++ AL + GRTD GV + G
Sbjct: 32 LDIAYDGTDFAGWAAQVGQR-TVAGDLDAALTTIF-----RTPVRLRAAGRTDAGVHASG 85
Query: 156 QVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
QV + + ++ + +G+ + + +R L R LP D+R++ + AP
Sbjct: 86 QVAHVDVPADALPNAYPRAGHVGD-------PEFLPLLRRLGRFLPADVRILDITRAPAG 138
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y Y W L+L AM +A + +G HDF FC
Sbjct: 139 FDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFC 198
Query: 258 KM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
+ A + + +R S L + AF W VR +V L +G+
Sbjct: 199 RHREGATTIRDLQRLDWS----------RAGTLVTAHVTADAFCWSMVRSLVGALLAVGE 248
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL G R + +AP L L D+
Sbjct: 249 HRRATTWCRELLTATG--RSSDFAVAPAHGLTLIQVDY 284
>gi|222529670|ref|YP_002573552.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM
6725]
gi|254789602|sp|B9MKC1.1|TRUA_ANATD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|222456517|gb|ACM60779.1| tRNA pseudouridine synthase A [Caldicellulosiruptor bescii DSM
6725]
Length = 244
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 117/248 (47%), Gaps = 50/248 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G ++G+ N + T++ I +A++K +E + GRTD+GV
Sbjct: 2 RNILLTIEYDGTGYFGWQKQPNKK-TIQGTIEEAIKKLT-----GEEVNLIGSGRTDRGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++ Q ++N K + +I + + LN VLP DI + A
Sbjct: 56 HALNQ------KANFKTSS-------------KIPTD-KFPLALNSVLPGDISIKDAVEA 95
Query: 212 PTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRN 255
P DFSAR+S + YKY +++ L++ AM+ A + F+GE+DF++
Sbjct: 96 PLDFSARYSARQKTYKYLIYNKKSRPALLRNYAYYYPYQLDVDAMQRACEYFIGEYDFKS 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC D+ +R + Y++FE N+ AI I + FL++ R + + +G
Sbjct: 156 FCSADSEAKTTIRR------VYNAYLTFE-NECIAIYITANGFLYNMARIIAGTILDVGA 208
Query: 316 G-LESIDV 322
G L+ +D+
Sbjct: 209 GKLKPMDI 216
>gi|312140887|ref|YP_004008223.1| tRNA pseudouridine synthase a [Rhodococcus equi 103S]
gi|311890226|emb|CBH49544.1| tRNA pseudouridine synthase A [Rhodococcus equi 103S]
Length = 274
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 118/280 (42%), Gaps = 60/280 (21%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEI---FKALEKTRLLVADKKESHYSRCGRTDKGVS 152
L + Y G F G+A TV E+ A+ +T +L+ + GRTD GV
Sbjct: 3 LDISYDGTDFSGWARQPGRR-TVCGEVEEKLSAIVRTPVLL--------TVAGRTDAGVH 53
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQV + + +++ + EE VR L R LP+D+RV S AP
Sbjct: 54 ASGQVAHVDVPADM-------------IPEEPSR----LVRRLARFLPRDVRVKAVSFAP 96
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARFS I R Y+Y W +++++ AM A + +G HDF
Sbjct: 97 EHFDARFSAIRRHYEYRLTTAPYGAEPLRARDTVAWPKDVDVDAMREASSRLLGLHDFAA 156
Query: 256 FCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
FCK A V +R +E S G++L A + AF W VR +V +
Sbjct: 157 FCKRREGATTVRELQRF--DWEQS-------GHELTAF-VSADAFCWSMVRSLVGAALAV 206
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G+G +++ + LL R +AP L L D+
Sbjct: 207 GEGRRTVEWMAGLLAER--ERASAVAVAPAHGLSLIRVDY 244
>gi|289435864|ref|YP_003465736.1| tRNA pseudouridine synthase A [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289172108|emb|CBH28654.1| tRNA pseudouridine synthase A [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 248
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 120/285 (42%), Gaps = 61/285 (21%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ + TV++EI KAL+K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPDTR-TVQAEIEKALKK----MHKGKSVRVTASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID-----YVRVLNRVLPKDIRVI 206
+ GQVI + E+D + + L + P DI +
Sbjct: 57 HAKGQVI-------------------------HFDSELDISAEKFQKALQVMTPFDISFL 91
Query: 207 GWSPAPTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGE 250
AP DF ARF + +EY+Y R LNL M+ A ++ VGE
Sbjct: 92 IVEEAPADFHARFGTVGKEYRYVVKRTKVFDPFSRNFALHYPYELNLEKMKLASERLVGE 151
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
HDF +FC +A + T + I E + I +G+ FL++ VR + L
Sbjct: 152 HDFTSFC---SARTERDSKVRTLYSID---FYEEEDDTLVIAFQGNGFLYNMVRILTGTL 205
Query: 311 FMIGQG-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
GQG + D+ ++LL + +K AP L L D++
Sbjct: 206 LDAGQGRISPDDITKALLARD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|167524395|ref|XP_001746533.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774803|gb|EDQ88429.1| predicted protein [Monosiga brevicollis MX1]
Length = 415
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 120/272 (44%), Gaps = 49/272 (18%)
Query: 65 KTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFK 124
+ ++ G + GK+ E K+Y AL + + G + G + E T+ES + +
Sbjct: 8 QADTAGDQAGKRPKPEDDG---RPRPKKY-ALLMGFQGTSYAGMQRNIGFE-TIESTLLR 62
Query: 125 ALEKTRLLVADKKES----HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETV 180
AL T + + E+ H+ RC RTDKGV + QV+A+ + +
Sbjct: 63 ALLVTGCIDKNNYETPQSMHFQRCARTDKGVHAARQVVAMRM-----------------I 105
Query: 181 QEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYF----------- 229
E DE LN LP DIR+ G F+ + +C R Y+Y
Sbjct: 106 LTENTVDE------LNAKLPDDIRIFGAFRTTKGFNPKNACTGRRYEYLLPTYALMPKEK 159
Query: 230 -----FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFE 284
+ + L+ K+++G H F NF +A+ + +R++T F +S + E
Sbjct: 160 VPVPEYRVDEPKLTWFRETLKRYIGTHKFHNFTAGKSASDDSCRRYITDFTVSEPF-ERE 218
Query: 285 GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
G + I+++G +F+ HQ+R M+ + I +G
Sbjct: 219 GIEWVRIQVKGQSFILHQIRKMIGLAVAIVRG 250
>gi|303233145|ref|ZP_07319818.1| tRNA pseudouridine synthase A [Atopobium vaginae PB189-T1-4]
gi|302480730|gb|EFL43817.1| tRNA pseudouridine synthase A [Atopobium vaginae PB189-T1-4]
Length = 321
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 119/257 (46%), Gaps = 48/257 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L++ Y G++F G+A TVE + L+ R+L +++ + GRTD GV +
Sbjct: 56 MVLRLGYEGEQFAGYAFQEGQR-TVEGCVRDVLQ--RVL---RRDVTLTCAGRTDAGVHA 109
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
Q ++ + +EC +S+ +R LN + P DI + A
Sbjct: 110 HAQYVSFPVTH--EECACAKSSL---------------LRSLNMLCPADIAIRTIYQAAP 152
Query: 214 DFSARFSCISREYKY---------------FFWRENLN---LSAMESAGKKFVGEHDFRN 255
DFSARF SR Y Y +W +++ + M +A + +GEH+F +
Sbjct: 153 DFSARFDARSRSYTYRIATAPLKPVLTAPFVWWNRHVHHVCMDDMNAAAQALIGEHNFES 212
Query: 256 FCKMDAANV-----HNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
FCK +A+V + +R +TS + Y+ G QL I I G+AFL + VR + L
Sbjct: 213 FCKATSADVLKSQGLSLQRCITSINVHRDYVL--GEQLICIDIEGNAFLHNMVRIIAGSL 270
Query: 311 FMIGQGLESIDVIESLL 327
+G+G S+ + +L
Sbjct: 271 LEVGRGARSVAWLGDVL 287
>gi|167629501|ref|YP_001680000.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1]
gi|167592241|gb|ABZ83989.1| tRNA pseudouridine synthase a [Heliobacterium modesticaldum Ice1]
Length = 259
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/254 (24%), Positives = 110/254 (43%), Gaps = 48/254 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
+R + L V Y G ++GF + N PT++ + +A++ V +E + GRTD
Sbjct: 3 ERRLKLTVAYDGTCYHGFQTQENPALPTIQDALVRAIK-----VLTGEEVKVNCAGRTDA 57
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV + GQV+ S I + D + +N +LP D+ V+
Sbjct: 58 GVHARGQVVDFVTSSPIPD------------------DRFPFA--MNAILPPDVAVVAAK 97
Query: 210 PAPTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDF 253
P F +RF + + Y+Y + L AM +A + FVG HDF
Sbjct: 98 TVPLAFHSRFGALGKHYRYTIYNHRIPSPFHRRYSHQVFPPLQFEAMAAAAQCFVGTHDF 157
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
R FC + V ++ R V C ++ + + + G+ FL++ +R + L +
Sbjct: 158 RGFCAT-GSPVKDFVRTVYR-----CDLTRQEEHRLVLDVMGNGFLYNMIRIIAGTLIDV 211
Query: 314 GQGLESIDVIESLL 327
G+G +++ I +++
Sbjct: 212 GKGKIALEEIPAII 225
>gi|395513517|ref|XP_003760970.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial
[Sarcophilus harrisii]
Length = 410
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 55/289 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL ++ + D K+ + RC
Sbjct: 65 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVSALVQSGCIPENHGEDMKKMSFQRC 124
Query: 145 GRTDKGVSSVGQVIA--IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
RTDKGVS+ GQ+++ ++L NI E +N LP
Sbjct: 125 ARTDKGVSAAGQIVSLKVWLIDNILEK-------------------------INSHLPSH 159
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFFW--------------RENLNLSAMESAGK--- 245
IR++G F+++ C +R Y Y R L+ +E +
Sbjct: 160 IRILGLKRVTGSFNSKNRCDARTYFYMLPTFAFAHKDHDIQDERYRLSPETLEKVNQLLA 219
Query: 246 KFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRC 305
+ G H+F NF + +R++ ++ EG + IKI+G +F+ HQ+R
Sbjct: 220 GYKGTHNFHNFTSQKGPKEPSARRYIMEMHCEAPFMR-EGMEFAVIKIKGQSFMMHQIRK 278
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
M+ ++ + +G V ES+++ + K AP + LVL+ F+
Sbjct: 279 MIGLVIAVLKGY----VPESVMERSWGEEKVDIPKAPGLGLVLERVHFE 323
>gi|397680278|ref|YP_006521813.1| tRNA pseudouridine synthase A [Mycobacterium massiliense str. GO
06]
gi|418247084|ref|ZP_12873470.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 47J26]
gi|420933001|ref|ZP_15396276.1| tRNA pseudouridine synthase A [Mycobacterium massiliense
1S-151-0930]
gi|420937112|ref|ZP_15400381.1| tRNA pseudouridine synthase A [Mycobacterium massiliense
1S-152-0914]
gi|420948066|ref|ZP_15411316.1| tRNA pseudouridine synthase A [Mycobacterium massiliense
1S-154-0310]
gi|420953411|ref|ZP_15416653.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-0626]
gi|420957585|ref|ZP_15420819.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-0107]
gi|420963287|ref|ZP_15426511.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-1231]
gi|420999304|ref|ZP_15462439.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-0912-R]
gi|421003827|ref|ZP_15466949.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-0912-S]
gi|353451577|gb|EHB99970.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 47J26]
gi|392137760|gb|EIU63497.1| tRNA pseudouridine synthase A [Mycobacterium massiliense
1S-151-0930]
gi|392142627|gb|EIU68352.1| tRNA pseudouridine synthase A [Mycobacterium massiliense
1S-152-0914]
gi|392152324|gb|EIU78031.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-0626]
gi|392155096|gb|EIU80802.1| tRNA pseudouridine synthase A [Mycobacterium massiliense
1S-154-0310]
gi|392178086|gb|EIV03739.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-0912-R]
gi|392192530|gb|EIV18154.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-0912-S]
gi|392246200|gb|EIV71677.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-1231]
gi|392247311|gb|EIV72787.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-0107]
gi|395458543|gb|AFN64206.1| tRNA pseudouridine synthase A [Mycobacterium massiliense str. GO
06]
Length = 294
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 113/275 (41%), Gaps = 39/275 (14%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ N TV + +A +V D + + + GRTD GV + G
Sbjct: 20 LDIAYDGTDFAGWATQVNQR-TVAGVLGEAFTT---IVGDPVQLYAA--GRTDAGVHATG 73
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + + +++ VR L+R LP D+RV+ S AP F
Sbjct: 74 QVAHLDVPAACLPGLRGRYRPAGAPEFDRL------VRRLSRFLPSDVRVLDISRAPAHF 127
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y W L++ AM A + +G DF FC+
Sbjct: 128 DARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLGLRDFAAFCR 187
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + T E+ +G QL A + AF W VR +V + +G+G
Sbjct: 188 -------HREGATTIRELQRFDWGVDGQQLTAY-VSADAFCWSMVRSLVGAVLAVGEGRR 239
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL N R + AP L L D+
Sbjct: 240 PVQWCVDLL--NKERRSSDFAAAPARGLTLVGVDY 272
>gi|154502979|ref|ZP_02040039.1| hypothetical protein RUMGNA_00801 [Ruminococcus gnavus ATCC 29149]
gi|153796518|gb|EDN78938.1| tRNA pseudouridine synthase A [Ruminococcus gnavus ATCC 29149]
Length = 244
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 118/278 (42%), Gaps = 51/278 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R L + Y G R+ G+ N + T++ + +A + + + S GRTD GV
Sbjct: 2 RTYKLTIAYDGSRYQGWQRQSNTDKTIQGLLEQAASEAAGYPVEVQGS-----GRTDGGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQ ++ LR ++E ++++ +NR+LP DIRVI
Sbjct: 57 HAKGQTASVILRGKVQES--------------------EFLQNMNRLLPLDIRVIEMELV 96
Query: 212 PTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRN 255
F AR S + + Y+Y + + + LN+ AM+ A +G +DF
Sbjct: 97 KNGFHARLSAVGKCYEYWIDMREKPDVFMRKYTYHYPKELNIEAMQRAADDLIGRYDF-- 154
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
AA + T I + +G++L I+ RGS F++H VR + L +G
Sbjct: 155 -----AAFTDKKEEKSTIRTIYAIIVEVQGDKL-RIEYRGSGFMYHMVRILTGTLLEVGD 208
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G + + +++ L G R +AP L L+ +
Sbjct: 209 GRRTPESVKAAL--AGRDRADAGFLAPARGLTLKEVYY 244
>gi|19551801|ref|NP_599803.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum ATCC
13032]
gi|62389456|ref|YP_224858.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum ATCC
13032]
gi|418244750|ref|ZP_12871164.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum ATCC
14067]
gi|41324790|emb|CAF19272.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A PROTEIN [Corynebacterium
glutamicum ATCC 13032]
gi|354511259|gb|EHE84174.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum ATCC
14067]
gi|385142724|emb|CCH23763.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum K051]
Length = 294
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 108/278 (38%), Gaps = 40/278 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G + + K LE +V ++ + GRTD GV +
Sbjct: 8 IRLDLAYDGTDFHGWAKQGTSD---LRTVQKVLEDNLSMVL-RETVELTVAGRTDAGVHA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + ++ E + + D VR L R+LP DIRV G A
Sbjct: 64 AGQVAHFDIPAHALEQRSIDG------------DPSKLVRRLGRLLPDDIRVHGVRFAEP 111
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y W + + L M+ A +G HDF F
Sbjct: 112 GFDARFSAMRRHYVYRITTHPAGALPTRRHDTAQWPKPVELERMQLAADALLGLHDFVAF 171
Query: 257 CKMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK A H R + F E Q+ + AF W VR +V +G+
Sbjct: 172 CK---AKPHATTVRELQKFAWKDVSTDIE-PQVYEAHVVADAFCWSMVRSLVGSCMAVGE 227
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G LLD + R P +AP L L D+
Sbjct: 228 GRRGSGFTAELLDAS--ERSPMVPVAPAKGLSLVGVDY 263
>gi|3915176|sp|Q45557.1|TRUA_BACSV RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|289265|gb|AAA73188.1| unknown [Bacillus sp. KSM-64]
Length = 244
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 118/275 (42%), Gaps = 53/275 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ GN E T++ +I L + +V K E S GRTD GV ++G
Sbjct: 6 LMIQYDGGRYKGWQRLGNGENTIQGKIETVLSE---MVGRKIEIIGS--GRTDAGVHALG 60
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + L N TV+E + LNR LP DI V + P F
Sbjct: 61 QVANVKLSENF------------TVKEVK--------EYLNRYLPHDISVTEVTLVPDRF 100
Query: 216 SARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKM 259
+R++ + Y Y W E+ L++ M A + FVGEHDF F
Sbjct: 101 HSRYNAKDKTYLYKIWNEDYTHPFMRKYSLHIEKKLHIDNMVKASQLFVGEHDFTAFSNA 160
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQ-LCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ N R + S I+ + NQ I++ G FL++ VR MV L +G G +
Sbjct: 161 KSKKKTN-TRTIHS-------ITIQDNQGFIDIRVCGDGFLYNMVRKMVGTLIEVGLGEK 212
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ + ++L++ + Q A L L+ F
Sbjct: 213 EPEQVLTILES---KDRSQAGFADATGLYLEGISF 244
>gi|94498945|ref|ZP_01305483.1| tRNA pseudouridine synthase A [Bermanella marisrubri]
gi|94428577|gb|EAT13549.1| tRNA pseudouridine synthase A [Oceanobacter sp. RED65]
Length = 297
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/255 (28%), Positives = 108/255 (42%), Gaps = 52/255 (20%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
+R+VA V Y G F G+ + P+V+ + KA+ + D GRTD
Sbjct: 29 RRFVA-GVEYNGALFKGWQKQKHYAGPSVQEALEKAISRVANHTVD-----VVCAGRTDA 82
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV + QVI + DE + +N LP + V
Sbjct: 83 GVHASAQVIHF--------------------DTSAVRDERAWKLGINTNLPDGVCVNWIM 122
Query: 210 PAPTDFSARFSCISREYKYF----------------FWRENLNLSAMESAGKKFVGEHDF 253
PAP DF ARFS ++R Y+YF +WR L+ M A + +GEHDF
Sbjct: 123 PAPQDFHARFSAVARRYRYFIMNKQVKPGLMHDGVSWWRRPLDAEKMHEAAQYLLGEHDF 182
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEG-NQLCAIKIRGSAFLWHQVRCMVAVLFM 312
+F D H + + YIS + N +++ +AFL+H VR +V VL
Sbjct: 183 TSFRAKDCQARHAVR--------TMKYISVKRLNDWVIVEVCANAFLYHMVRNIVGVLLP 234
Query: 313 IGQGLESIDVIESLL 327
IG+G + ++ E +L
Sbjct: 235 IGEGKKPVEWCEQVL 249
>gi|145294737|ref|YP_001137558.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum R]
gi|417969794|ref|ZP_12610730.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum S9114]
gi|140844657|dbj|BAF53656.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344045898|gb|EGV41567.1| tRNA pseudouridine synthase A [Corynebacterium glutamicum S9114]
Length = 294
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 108/278 (38%), Gaps = 40/278 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G + + K LE +V ++ + GRTD GV +
Sbjct: 8 IRLDLAYDGTDFHGWAKQGTSD---LRTVQKVLEDNLSMVL-RETVELTVAGRTDAGVHA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + ++ E + + D VR L R+LP DIRV G A
Sbjct: 64 AGQVAHFDIPAHALEQRSIDG------------DPSKLVRRLGRLLPDDIRVHGVRFAEP 111
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y W + + L M+ A +G HDF F
Sbjct: 112 GFDARFSAMRRHYVYRITTHPAGALPTRRHDTAQWPKPVELERMQLAADALLGLHDFVAF 171
Query: 257 CKMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK A H R + F E Q+ + AF W VR +V +G+
Sbjct: 172 CK---AKPHATTVRELQKFAWKDVSTDIE-PQVYEAHVVADAFCWSMVRSLVGSCMAVGE 227
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G LLD + R P +AP L L D+
Sbjct: 228 GRRGSGFTTELLDAS--ERSPMVPVAPAKGLSLVGVDY 263
>gi|420943261|ref|ZP_15406517.1| tRNA pseudouridine synthase A [Mycobacterium massiliense
1S-153-0915]
gi|420993529|ref|ZP_15456675.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-0307]
gi|392148358|gb|EIU74076.1| tRNA pseudouridine synthase A [Mycobacterium massiliense
1S-153-0915]
gi|392179631|gb|EIV05283.1| tRNA pseudouridine synthase A [Mycobacterium massiliense 2B-0307]
Length = 277
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 113/275 (41%), Gaps = 39/275 (14%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ N TV + +A +V D + + + GRTD GV + G
Sbjct: 3 LDIAYDGTDFAGWATQVNQR-TVAGVLGEAFTT---IVGDPVQLYAA--GRTDAGVHATG 56
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + + +++ VR L+R LP D+RV+ S AP F
Sbjct: 57 QVAHLDVPAACLPGLRGRYRPAGAPEFDRL------VRRLSRFLPSDVRVLDISRAPAHF 110
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y W L++ AM A + +G DF FC+
Sbjct: 111 DARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLGLRDFAAFCR 170
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + T E+ +G QL A + AF W VR +V + +G+G
Sbjct: 171 -------HREGATTIRELQRFDWGVDGQQLTAY-VSADAFCWSMVRSLVGAVLAVGEGRR 222
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL N R + AP L L D+
Sbjct: 223 PVQWCVDLL--NKERRSSDFAAAPARGLTLVGVDY 255
>gi|289766139|ref|ZP_06525517.1| tRNA pseudouridine synthase A [Fusobacterium sp. D11]
gi|289717694|gb|EFD81706.1| tRNA pseudouridine synthase A [Fusobacterium sp. D11]
Length = 245
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 115/274 (41%), Gaps = 48/274 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ ++ Y G R+YGF N + TV+ EI K L + K+E + GRTD+GV +
Sbjct: 6 IKIEFRYDGSRYYGFQRQPN-KITVQGEIEKILR-----IVTKEEINLISAGRTDRGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV Y S I IE Y +L R L KDI ++
Sbjct: 60 NHQVSNFYTSSTI-----------------PIEK---YKYLLTRALSKDIDILSVEEVDE 99
Query: 214 DFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
+F+AR + REY Y F +E +++ +E FVG HDF+NF
Sbjct: 100 NFNARHNAKMREYIYIISWEKNPFEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLN 159
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
D + VT EI + + G I I+GSAFL QVR MV I G
Sbjct: 160 DCVS------KVTIREIYQIEVKYFGESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLP 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ I+ +L N R+ + N+ L L ++
Sbjct: 214 ENHIKLML--NDFTREYKKNLVEAEGLYLNKINY 245
>gi|414581062|ref|ZP_11438202.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-1215]
gi|420883932|ref|ZP_15347292.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0421]
gi|420891789|ref|ZP_15355136.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0422]
gi|420896087|ref|ZP_15359426.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0708]
gi|420902184|ref|ZP_15365515.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0817]
gi|420904891|ref|ZP_15368209.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-1212]
gi|420974530|ref|ZP_15437721.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0921]
gi|392079049|gb|EIU04876.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0422]
gi|392079695|gb|EIU05521.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0421]
gi|392095399|gb|EIU21194.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0708]
gi|392099545|gb|EIU25339.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0817]
gi|392102795|gb|EIU28581.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-1212]
gi|392116214|gb|EIU41982.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-1215]
gi|392162413|gb|EIU88103.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0921]
Length = 294
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 113/275 (41%), Gaps = 39/275 (14%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ N TV + +A +V D + + + GRTD GV + G
Sbjct: 20 LDIAYDGTDFAGWATQVNQR-TVAGVLGEAFTT---IVGDPVQLYAA--GRTDAGVHATG 73
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + + +++ VR L+R LP D+RV+ S AP F
Sbjct: 74 QVAHLDVPAACLPGLRGRYRPAGAPEFDRL------VRRLSRFLPSDVRVLDISRAPAHF 127
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y W L++ AM A + +G DF FC+
Sbjct: 128 DARFSALRRHYEYRLSTASFGVLPLARRDVVGWHRPLDVDAMNEASRNLLGLRDFAAFCR 187
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + T E+ +G QL A + AF W VR +V + +G+G
Sbjct: 188 -------HREGATTIRELQRFDWGVDGQQLTAY-VSADAFCWSMVRSLVGAVLAVGEGRR 239
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL N R + AP L L D+
Sbjct: 240 PVQWCVDLL--NKERRSSDFAAAPARGLTLVGVDY 272
>gi|226365626|ref|YP_002783409.1| tRNA pseudouridine synthase TruA [Rhodococcus opacus B4]
gi|226244116|dbj|BAH54464.1| tRNA pseudouridine synthase TruA [Rhodococcus opacus B4]
Length = 270
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 112/278 (40%), Gaps = 56/278 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L V Y G F G+A + TV EI + +L + + GRTD GV + G
Sbjct: 3 LDVAYDGTDFSGWARQNGLR-TVCGEI-----EEKLGAVLRSPLQLTVAGRTDAGVHATG 56
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID-YVRVLNRVLPKDIRVIGWSPAPTD 214
QV + V E + DE VR L R LPKD+R+ S AP
Sbjct: 57 QVAHV------------------DVPVEALPDEPSRLVRRLARFLPKDVRIKQISFAPEH 98
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y+Y + + L+L M SA +G HDF FC
Sbjct: 99 FDARFSAMRRHYEYRLTSAVYGADPLRARDTVSYPKILDLELMRSASATLLGLHDFAAFC 158
Query: 258 KM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
K A V + +R F+ +G+ A + AF W VR +V + +G+
Sbjct: 159 KRREGATTVRDLQR----FD-----WERDGDVFTAF-VSADAFCWSMVRSLVGAVLAVGE 208
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G +D IE LL R +AP L L D+
Sbjct: 209 GRRDLDWIEGLLRETS--RSSSILVAPAHGLCLVRVDY 244
>gi|87121856|ref|ZP_01077742.1| tRNA-pseudouridine synthase I [Marinomonas sp. MED121]
gi|86162885|gb|EAQ64164.1| tRNA-pseudouridine synthase I [Marinomonas sp. MED121]
Length = 275
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 111/256 (43%), Gaps = 54/256 (21%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSR---CGRT 147
K+ VAL V Y G + G+ + PTV+ + +AL K +H + GRT
Sbjct: 3 KKKVALVVEYKGSEYKGWQAQKYDVPTVQKCLEEALSKI--------AAHTIKVVCAGRT 54
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D V + QV+ + +++ E + ++G +N LPKDI V+
Sbjct: 55 DASVHASAQVV--HFETDV-ERSERAWTLG-----------------VNSNLPKDIAVVA 94
Query: 208 WSPAPTDFSARFSCISREYKYFFW----------------RENLNLSAMESAGKKFVGEH 251
+ F ARFS +SR Y+Y + + L++ M+ A K FVG+H
Sbjct: 95 AANMHPSFHARFSAVSRRYRYVIYSHPLRPAIMSKEVTWTHKKLDILKMQQAAKVFVGKH 154
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
DF +F + H R + +FEI ++ Q + IR +AFL H +R VL
Sbjct: 155 DFSSF-RAVGCQAHTPVRTILNFEI------YQSGQYIVLDIRANAFLHHMIRNFAGVLM 207
Query: 312 MIGQGLESIDVIESLL 327
IG G E + +L
Sbjct: 208 TIGAGEEEVSWASKVL 223
>gi|329768896|ref|ZP_08260324.1| tRNA pseudouridine synthase A [Gemella sanguinis M325]
gi|328837259|gb|EGF86896.1| tRNA pseudouridine synthase A [Gemella sanguinis M325]
Length = 262
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 111/250 (44%), Gaps = 46/250 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L Y G R++GF N TV+ EI K+L K KK GRTD GV +
Sbjct: 3 VVLICRYDGSRYHGFQIQPN-NNTVQEEIEKSLRKIH-----KKNVRIYMSGRTDSGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ + + N + G +V+ +N ++PKDIR++
Sbjct: 57 YGQVLHF-------DTDLNIPTDG-------------WVKAINAMIPKDIRIVSAKVVND 96
Query: 214 DFSARFSCISREYKY--FFWRE--------------NLNLSAMESAGKKFVGEHDFRNFC 257
+F R++ I + Y Y + RE N N + A K F+GEHDF +FC
Sbjct: 97 EFHVRYNSIKKTYSYKLYLGREIDPFLINYVGQHKFNFNFDKAKEALKYFIGEHDFSSFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+ + V + R + SF++ + + + +I G+ FL++ VR ++ + + G
Sbjct: 157 SKNTS-VEDKVRTIYSFKMDR---DNQNDNIINFEITGNGFLYNMVRIIIGTVQDVAAGK 212
Query: 318 ESIDVIESLL 327
+ I+ +L
Sbjct: 213 YEPEYIQEIL 222
>gi|433461721|ref|ZP_20419324.1| tRNA pseudouridine synthase A [Halobacillus sp. BAB-2008]
gi|432189736|gb|ELK46813.1| tRNA pseudouridine synthase A [Halobacillus sp. BAB-2008]
Length = 247
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 47/236 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
+ Y G + G+ N T+++E+ KAL K + + + GRTD GV ++G
Sbjct: 6 FTLQYDGTAYAGYQVQPNGN-TIQAELEKALAK----IHKGETVKVTASGRTDAGVHAMG 60
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QVI +I + N + R +N +LP DI + P DF
Sbjct: 61 QVIHFDTPLSIPDEN--------------------WKRAVNSLLPDDIMITHSEAVPEDF 100
Query: 216 SARFSCISREYKYFFW----------------RENLNLSAMESAGKKFVGEHDFRNFCKM 259
AR+ + +EY+Y+ W + L+++AM+ A + GEHDF +FC
Sbjct: 101 HARYGTVGKEYRYYVWNDRDRQLFKRHHTYHVKAELDMAAMKEACRLLEGEHDFTSFCSP 160
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
+ R T +E S I EG ++ + RGS FL++ VR +V L +G+
Sbjct: 161 KTDIKGDKVR--TIYEAS---IRKEGAEIVFL-FRGSGFLYNMVRILVGTLLEVGR 210
>gi|406889676|gb|EKD35801.1| hypothetical protein ACD_75C01773G0002 [uncultured bacterium]
Length = 260
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 120/279 (43%), Gaps = 49/279 (17%)
Query: 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
+RY L + Y G F G+ + TV+ ++ KA + VA + CGRTD
Sbjct: 7 LRRY-KLVLEYDGTNFSGWQKQADAR-TVQGDVLKAAARVVGEVAMDLQG----CGRTDG 60
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV ++ V + + S + E++E R L LPKDI ++ +
Sbjct: 61 GVHALEYVAHLEVASKMPP--------------EEVE------RRLAEELPKDIALLAVT 100
Query: 210 PAPTDFSARFSCISREY-------------KYFFW-RENLNLSAMESAGKKFVGEHDFRN 255
A F AR+SC++R Y +Y +W RE L+L+ M A G HDF
Sbjct: 101 KADPRFHARYSCLARSYVYQLRTRKSAFGKRYGWWMREPLDLAVMHQAAAVMEGMHDFAA 160
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F A K+ T ++ EG+ L +++ GS FLWH VR MV VL +G
Sbjct: 161 F-----AEKQELKKS-TKVDVQQIRFLVEGH-LIRLRVVGSHFLWHMVRRMVGVLVEVGC 213
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
S+ ++ LL G P + AP L + +D
Sbjct: 214 HRLSVADVQGLL--QGPSEIPGNHTAPAAGLFFEKAFYD 250
>gi|312135434|ref|YP_004002772.1| tRNA pseudouridine synthase a [Caldicellulosiruptor owensensis OL]
gi|311775485|gb|ADQ04972.1| tRNA pseudouridine synthase A [Caldicellulosiruptor owensensis OL]
Length = 244
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 117/248 (47%), Gaps = 50/248 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G ++G+ N + T++ I +A++K +E + GRTD+GV
Sbjct: 2 RNILLTIEYDGTGYFGWQKQPNKK-TIQGTIEEAIKKLT-----GEEVNLIGSGRTDRGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++ Q ++N K + +I + + LN VLP DI V
Sbjct: 56 HALNQ------KANFKTSS-------------KIPTD-KFPLALNSVLPGDISVKDAVEV 95
Query: 212 PTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRN 255
P DFSAR+S + YKY +++ L++ AM+ A + F+GE+DF++
Sbjct: 96 PLDFSARYSAKQKTYKYLIYNKKSRPALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKS 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC D + RH+ + Y++FE N+ AI I + FL++ R + + +G
Sbjct: 156 FCSAD-SEAKTTIRHIYN-----AYLTFE-NECIAIYITANGFLYNMARIIAGTILDVGA 208
Query: 316 G-LESIDV 322
G L+ +D+
Sbjct: 209 GKLKPMDI 216
>gi|42559832|sp|Q8NSV0.1|TRUA_CORGL RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|21323332|dbj|BAB97960.1| Pseudouridylate synthase (tRNA psi55) [Corynebacterium glutamicum
ATCC 13032]
Length = 289
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 108/278 (38%), Gaps = 40/278 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F+G+A G + + K LE +V ++ + GRTD GV +
Sbjct: 3 IRLDLAYDGTDFHGWAKQGTSD---LRTVQKVLEDNLSMVL-RETVELTVAGRTDAGVHA 58
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + ++ E + + D VR L R+LP DIRV G A
Sbjct: 59 AGQVAHFDIPAHALEQRSIDG------------DPSKLVRRLGRLLPDDIRVHGVRFAEP 106
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y W + + L M+ A +G HDF F
Sbjct: 107 GFDARFSAMRRHYVYRITTHPAGALPTRRHDTAQWPKPVELERMQLAADALLGLHDFVAF 166
Query: 257 CKMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK A H R + F E Q+ + AF W VR +V +G+
Sbjct: 167 CK---AKPHATTVRELQKFAWKDVSTDIE-PQVYEAHVVADAFCWSMVRSLVGSCMAVGE 222
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G LLD + R P +AP L L D+
Sbjct: 223 GRRGSGFTAELLDAS--ERSPMVPVAPAKGLSLVGVDY 258
>gi|254931132|ref|ZP_05264491.1| tRNA pseudouridine synthase A [Listeria monocytogenes HPB2262]
gi|405750943|ref|YP_006674409.1| tRNA pseudouridine synthase A [Listeria monocytogenes ATCC 19117]
gi|417318578|ref|ZP_12105153.1| tRNA pseudouridine synthase A [Listeria monocytogenes J1-220]
gi|424824348|ref|ZP_18249361.1| tRNA pseudouridine synthase A 1 [Listeria monocytogenes str. Scott
A]
gi|293582680|gb|EFF94712.1| tRNA pseudouridine synthase A [Listeria monocytogenes HPB2262]
gi|328469771|gb|EGF40688.1| tRNA pseudouridine synthase A [Listeria monocytogenes J1-220]
gi|332313028|gb|EGJ26123.1| tRNA pseudouridine synthase A 1 [Listeria monocytogenes str. Scott
A]
gi|404220143|emb|CBY71507.1| tRNA pseudouridine synthase A [Listeria monocytogenes ATCC 19117]
Length = 248
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 120/280 (42%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL K + K GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALTK----MHKGKTVRIKASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQVMTPFDISFLTVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DF ARF + +EY+Y R L++S M+ A K+ +GEHDF +
Sbjct: 97 PDDFHARFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 G-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ D+ E+LL + +K AP L L D++
Sbjct: 211 DRISPDDISEALLARDR--QKLISKTAPPQGLYLWRVDYE 248
>gi|343083601|ref|YP_004772896.1| tRNA pseudouridine synthase A [Cyclobacterium marinum DSM 745]
gi|342352135|gb|AEL24665.1| tRNA pseudouridine synthase A [Cyclobacterium marinum DSM 745]
Length = 264
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 116/282 (41%), Gaps = 47/282 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
++ Y G R++G+ ++ T++ LEKT V + RTD GVS +
Sbjct: 10 FRIQYLGLRYHGWQVQKGVK-TIQG----TLEKTFRYVLQHENFKILGSSRTDTGVSCLN 64
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
++L I D + LN LP DIR++ + DF
Sbjct: 65 GAFELFL--------------------PYIIDPNSLIGPLNDFLPADIRILEGFQSSYDF 104
Query: 216 SARFSCISREYKYFF----------------WRENLNLSAMESAGKKFVGEHDFRNFCKM 259
+ ++ Y Y+F ++L+L M F G+HDFR FC
Sbjct: 105 NVIQDVANKSYGYYFSFGPKPHPMYAGSVAYAGQSLDLGLMNEGAALFKGKHDFRRFCS- 163
Query: 260 DAANVHNYKRHVTSFEI---SPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
N H++ R +T +I S + + +++GS FL HQVR M A L +G+G
Sbjct: 164 QGKNTHDFIREITYAQIDEPSEHFTFLPEKNVKVFRVKGSGFLMHQVRRMAACLISLGKG 223
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+ IE L ++ + P + AP L+L+ F G KF
Sbjct: 224 ELKLGEIEEALTSS--EKTPLSSKAPANGLILEKVSFVGDKF 263
>gi|118616627|ref|YP_904959.1| tRNA pseudouridine synthase A [Mycobacterium ulcerans Agy99]
gi|118568737|gb|ABL03488.1| pseudouridine synthase a, TruA [Mycobacterium ulcerans Agy99]
Length = 260
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 95/231 (41%), Gaps = 41/231 (17%)
Query: 144 CGRTDKGVSSVGQVI-AIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV A + + +A G+ + + VR L R LP D
Sbjct: 29 AGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGD-------PEFLPLVRRLARFLPAD 81
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK 245
+RV+ + APT F ARFS + R Y Y W L++ AM A +
Sbjct: 82 LRVLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASQ 141
Query: 246 KFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGN-QLCAIKIRGSAFLWHQ 302
+ +G H+F FC+ A + + +R + + N L ++ AF W
Sbjct: 142 ELLGLHNFAAFCRRREGATTIRDLQR-----------LDWSRNGHLVTAQVSADAFCWSM 190
Query: 303 VRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
VR +V L +G+ + D LL R + AP LVL D+
Sbjct: 191 VRSLVGALLAVGEHRRTPDWCRELLTATA--RSSDFAAAPAHGLVLAKVDY 239
>gi|18309973|ref|NP_561907.1| tRNA pseudouridine synthase A [Clostridium perfringens str. 13]
gi|24212547|sp|Q8XLQ0.1|TRUA1_CLOPE RecName: Full=tRNA pseudouridine synthase A 1; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 1; AltName: Full=tRNA-uridine
isomerase I 1
gi|18144651|dbj|BAB80697.1| tRNA-pseudouridine synthase I [Clostridium perfringens str. 13]
Length = 248
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 107/244 (43%), Gaps = 51/244 (20%)
Query: 92 RYVALKVMYFGQRFYGFASD---GNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
R + + + Y G ++ G+ G+ TV+ ++ K L K +E CGRTD
Sbjct: 2 RNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTK-----MTSEEIQLIGCGRTD 56
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
GV + V +N K N+ M +E I+Y+ N LP+DIRV
Sbjct: 57 SGVHAKNYV------ANFK----TNSLM-------TLEQIIEYI---NEYLPEDIRVTEI 96
Query: 209 SPAPTDFSARFSCISREYKY--------------FFW--RENLNLSAMESAGKKFVGEHD 252
A F ARF+ S+ Y+Y + W E L+L AME K +G HD
Sbjct: 97 REASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHD 156
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
F++F + + N R + S E E N + +IKI G+ FL + VR MV L
Sbjct: 157 FKSFTSLKSKNKSTL-RTINSIEFH------ENNNILSIKINGNGFLLNMVRIMVGTLVD 209
Query: 313 IGQG 316
+G G
Sbjct: 210 VGLG 213
>gi|365871703|ref|ZP_09411242.1| tRNA pseudouridine synthase A [Mycobacterium massiliense CCUG 48898
= JCM 15300]
gi|420880416|ref|ZP_15343783.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0304]
gi|421050795|ref|ZP_15513789.1| tRNA pseudouridine synthase A [Mycobacterium massiliense CCUG 48898
= JCM 15300]
gi|363994043|gb|EHM15264.1| tRNA pseudouridine synthase A [Mycobacterium massiliense CCUG 48898
= JCM 15300]
gi|392085325|gb|EIU11150.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 5S-0304]
gi|392239398|gb|EIV64891.1| tRNA pseudouridine synthase A [Mycobacterium massiliense CCUG
48898]
Length = 277
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 113/275 (41%), Gaps = 39/275 (14%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ N TV + +A +V D + + + GRTD GV + G
Sbjct: 3 LDIAYDGTDFAGWATQVNQR-TVAGVLGEAFTT---IVGDPVQLYAA--GRTDAGVHATG 56
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + + +++ VR L+R LP D+RV+ S AP F
Sbjct: 57 QVAHLDVPAACLPGLRGRYRPAGAPEFDRL------VRRLSRFLPSDVRVLDISRAPAHF 110
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y W L++ AM A + +G DF FC+
Sbjct: 111 DARFSALRRHYEYRLSTASFGVLPLARRDVVGWHRPLDVDAMNEASRNLLGLRDFAAFCR 170
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + T E+ +G QL A + AF W VR +V + +G+G
Sbjct: 171 -------HREGATTIRELQRFDWGVDGQQLTAY-VSADAFCWSMVRSLVGAVLAVGEGRR 222
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL N R + AP L L D+
Sbjct: 223 PVQWCVDLL--NKERRSSDFAAAPARGLTLVGVDY 255
>gi|229815740|ref|ZP_04446065.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM
13280]
gi|229808656|gb|EEP44433.1| hypothetical protein COLINT_02789 [Collinsella intestinalis DSM
13280]
Length = 292
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 112/265 (42%), Gaps = 58/265 (21%)
Query: 73 TGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL 132
+G +++ GTL ++ Y G F GFA TV E+ +ALE
Sbjct: 21 SGAYPAVDELDGTL--------VFRLGYDGAAFSGFAEQPEGLRTVAGEVRRALETIL-- 70
Query: 133 VADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192
++ + GRTD GV +V Q ++I ++ E +A ++
Sbjct: 71 ---RRPVDLTCAGRTDAGVHAVSQYVSIPAHAD--ELAITHAR---------------WM 110
Query: 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKY---------------FFW-RENLN 236
R + +LP DI + A FSARF SR Y Y +W R L+
Sbjct: 111 RAMAALLPSDIALNAVYHARPGFSARFDARSRTYTYRIVTGDARPLLTRSVTWWHRLPLD 170
Query: 237 LSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFE-----GNQLCAI 291
+ AME A VGEHDF++FCK +A R+V + +SFE G + A
Sbjct: 171 MDAMERAAACLVGEHDFKSFCKTSSAIDKPTCRNVIA-------VSFERASALGEEHIAF 223
Query: 292 KIRGSAFLWHQVRCMVAVLFMIGQG 316
I G+AFL VR +V L +G G
Sbjct: 224 TITGNAFLHSMVRTIVGSLVEVGAG 248
>gi|56693277|ref|NP_001008603.1| tRNA pseudouridine synthase A [Danio rerio]
gi|56269412|gb|AAH86827.1| Pseudouridine synthase 1 [Danio rerio]
Length = 376
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 130/302 (43%), Gaps = 55/302 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNME--PTVESEIFKALEKTRLL----VADKKESHYSRC 144
K+ VAL + Y G+ +YG + T+E E+ AL R + + K+ + R
Sbjct: 39 KKKVALLMAYSGKGYYGMQRNARNSQFKTIEDELVTALVGARCIPEGHAEEMKKMSFQRS 98
Query: 145 GRTDKGVSSVGQVIA--IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
RTDKGVS+VG+V++ +++ NI E +N LP
Sbjct: 99 ARTDKGVSAVGRVVSLKVWMIENILE-------------------------KINAHLPPR 133
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYF----------FWREN----LNLSAMESAGKKFV 248
IRV+G F+++ +C +R Y Y + +E+ L +++ + F
Sbjct: 134 IRVLGCKRVTGGFNSKNNCYARTYSYMLPTVAFSPKDYNQEDTSFRLTSDTLQTVNRLFC 193
Query: 249 ---GEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRC 305
G H+F NF + R++T +I + + I +RG +F+ HQ+R
Sbjct: 194 LYKGTHNFHNFTSQKGHRDPSAMRYITHMSCGEPFIR-KDVEFAVITVRGQSFMMHQIRK 252
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
M+ ++ + +G V E +++ + K + AP + LVL+ FDG D
Sbjct: 253 MIGLVIAVVKGY----VDEGVMEKSWGEEKVGVSKAPGLGLVLERVHFDGYNKRFGGDGI 308
Query: 366 HD 367
H+
Sbjct: 309 HE 310
>gi|183981112|ref|YP_001849403.1| tRNA pseudouridine synthase A [Mycobacterium marinum M]
gi|443489583|ref|YP_007367730.1| pseudouridine synthase a, TruA [Mycobacterium liflandii 128FXT]
gi|183174438|gb|ACC39548.1| pseudouridine synthase a, TruA [Mycobacterium marinum M]
gi|442582080|gb|AGC61223.1| pseudouridine synthase a, TruA [Mycobacterium liflandii 128FXT]
Length = 237
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 93/230 (40%), Gaps = 39/230 (16%)
Query: 144 CGRTDKGVSSVGQVI-AIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV A + + +A G+ + + VR L R LP D
Sbjct: 6 AGRTDAGVHATGQVAHADVPVDALPNAYSRSARAGD-------PEFLPLVRRLARFLPAD 58
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK 245
+RV+ + APT F ARFS + R Y Y W L++ AM A +
Sbjct: 59 LRVLDIARAPTAFDARFSALRRHYVYRLSTAPYGVEPQQARYVTVWPRELDIDAMTVASR 118
Query: 246 KFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
+ +G H+F FC+ A + + +R S L ++ AF W V
Sbjct: 119 ELLGLHNFAAFCRRREGATTIRDLQRLDWS----------RNGHLVTAQVSADAFCWSMV 168
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
R +V L +G+ + D LL R + AP LVL D+
Sbjct: 169 RSLVGALLAVGEHRRTPDWCRELLTATA--RSSDFAAAPAHGLVLAKVDY 216
>gi|395772103|ref|ZP_10452618.1| tRNA pseudouridine synthase A [Streptomyces acidiscabies 84-104]
Length = 288
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 113/270 (41%), Gaps = 52/270 (19%)
Query: 82 MSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY 141
MS + F R V L + Y G F+G+A + TV+ E+ AL V E Y
Sbjct: 1 MSDDVRTGFVR-VRLDLSYDGTGFHGWAKQAGGKRTVQGEVEDALRT----VTRSGEVGY 55
Query: 142 --SRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVL 199
+ GRTD GV + GQV + + E V E E + R+ R L
Sbjct: 56 DLTVAGRTDAGVHARGQVAHV--------------DLPEAVWGEHREKLLK--RLAGR-L 98
Query: 200 PKDIRVIGWSPAPTDFSARFSCISREYKY----------------FFWRE-NLNLSAMES 242
KD+RV G + AP F+ARF+ + R Y Y W + L+++ M++
Sbjct: 99 SKDVRVWGVAEAPAGFNARFAALWRRYVYRVGDQAGGVDPLLRSHVLWHDWPLDVAVMDA 158
Query: 243 AGKKFVGEHDFRNFCKMDAANVHNYKRHVTSF--EISPCYISFEGNQLCAIKIRGSAFLW 300
A K VGEHDF + K KR S EI + + + +++R AF
Sbjct: 159 AAKSLVGEHDFAAYAK---------KREGASTVREIFDFGVRRRDDGVVEVEVRADAFCH 209
Query: 301 HQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
+QVR MV L +G G +LD
Sbjct: 210 NQVRSMVGALLFVGDGHRDAGWPRRVLDAG 239
>gi|429125254|ref|ZP_19185786.1| tRNA pseudouridine synthase A [Brachyspira hampsonii 30446]
gi|426278808|gb|EKV55838.1| tRNA pseudouridine synthase A [Brachyspira hampsonii 30446]
Length = 247
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 124/278 (44%), Gaps = 51/278 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ + + Y G FYG+ N+ TV+ EI+KA+EK V +K + Y CGRTD GV +
Sbjct: 4 IKITIQYDGTDFYGWQIQPNLR-TVQGEIYKAVEK----VYGEKITIYG-CGRTDAGVHA 57
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQV N M + + I LN L +D+R+I P
Sbjct: 58 LGQV-----------ANFRVPKMLVPINKVHI--------ALNSYLGRDLRIIKAEEMPD 98
Query: 214 DFSARFSCISREYKY----------------FFWREN-LNLSAMESAGKKFVGEHDFRNF 256
+F+AR S I REY Y +F+R+N ++ + K +GEH+F +F
Sbjct: 99 NFNARASAIFREYLYIVHNSSTSFPFYERYAWFYRKNIIDEKLINEYAKYLIGEHNFTSF 158
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
C + N ++ I +G+ + I IRG+AFL + VR +V L +
Sbjct: 159 CSTEDENDSKFRYLERVKAIR------KGDTIYFI-IRGNAFLHNMVRIIVGTLVEGQKK 211
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ I+ IE +L + R + AP L + F+
Sbjct: 212 KKPINFIEDILKSEN--RASAFVTAPAHGLYFRRAFFN 247
>gi|313884603|ref|ZP_07818364.1| tRNA pseudouridine synthase A [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620387|gb|EFR31815.1| tRNA pseudouridine synthase A [Eremococcus coleocola
ACS-139-V-Col8]
Length = 256
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 109/252 (43%), Gaps = 44/252 (17%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+KV Y G + G+ N P+V++++ +AL K AD + GRTD GV
Sbjct: 3 RY-AIKVEYDGSNYVGYQVQPN-GPSVQAQLDRALLKLAKRPADHPVLTVA-SGRTDSGV 59
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++GQV+ L I A LN +L KDIRV+ S
Sbjct: 60 HALGQVVHFDLDFEIHPLALAKA--------------------LNSILNKDIRVVAVSQV 99
Query: 212 PTDFSARFSCISREYKY-------------FFWREN---LNLSAMESAGKKFVGEHDFRN 255
DF AR+ I + Y Y F+ + +L M+ A VG+HDF +
Sbjct: 100 APDFHARYHAIGKAYLYRIDTQAYPDPFKRFYTLHHPYRYDLGKMQRALTDLVGQHDFTS 159
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC ++ + R + I + NQ I G+ FL++ VR +V L IG
Sbjct: 160 FCSTH-SDKEDKVRTIKFATIEEDLV----NQELRFMIAGNGFLYNMVRIIVGTLLQIGD 214
Query: 316 GLESIDVIESLL 327
GL+ +D + LL
Sbjct: 215 GLKPVDEFKRLL 226
>gi|344996365|ref|YP_004798708.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus
6A]
gi|343964584|gb|AEM73731.1| tRNA pseudouridine synthase A [Caldicellulosiruptor lactoaceticus
6A]
Length = 244
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 121/254 (47%), Gaps = 53/254 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G ++G+ N + T++ I +A++K +E + GRTD+GV
Sbjct: 2 RNILLTIEYDGTGYFGWQKQPNKK-TIQGTIEEAIKKLT-----GEEVNLIGSGRTDRGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++ Q ++N K TN+ +I + + LN VLP DI V
Sbjct: 56 HALNQ------KANFK---TNS----------KIPTD-KFPLALNSVLPGDISVKDAVEV 95
Query: 212 PTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRN 255
P DFSAR+S + YKY +++ L++ AM+ A + F+GE+DF++
Sbjct: 96 PLDFSARYSAKQKTYKYLIYNKKSRPALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKS 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC D+ +R + Y++FE N+ AI I + FL++ R + + +G
Sbjct: 156 FCSADSEAKTTIRR------VYNAYLTFE-NECIAIYITANGFLYNMARIIAGTILDVGA 208
Query: 316 G-LESID---VIES 325
G L+ +D VIES
Sbjct: 209 GKLKPMDIPLVIES 222
>gi|403237135|ref|ZP_10915721.1| tRNA pseudouridine synthase A [Bacillus sp. 10403023]
Length = 245
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 76/274 (27%), Positives = 116/274 (42%), Gaps = 50/274 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ GN + T++ +I L + L +K E S GRTD GV ++
Sbjct: 6 LTIQYDGGRYKGWQRLGNGDNTIQGKIENVLTE---LAGEKIEIIGS--GRTDAGVHALA 60
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
Q+ +R N E DE+ + LNR LP DI V+ + F
Sbjct: 61 QIANFKMRKNANE------------------DEV--MHYLNRYLPNDISVVDVTLVHDRF 100
Query: 216 SARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ + Y Y W E L++ M A F+G+HDF ++
Sbjct: 101 HARYNAKDKTYLYKIWNEQYTHPFMRKYSMHVEEKLDIEKMRKASHYFLGKHDFTSYSNA 160
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + R + S EI+ EG IK+RG+ FL++ VR +V L +G G
Sbjct: 161 KSKK-KSMVREIYSLEINKN----EG--FIEIKVRGNGFLYNMVRKIVGTLIEVGLGEID 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
I S+L++ R MA L L+ F
Sbjct: 214 ATAIPSILESK--ERIQTGRMADAEGLYLEKVGF 245
>gi|293604664|ref|ZP_06687064.1| tRNA pseudouridine synthase A [Achromobacter piechaudii ATCC 43553]
gi|292816833|gb|EFF75914.1| tRNA pseudouridine synthase A [Achromobacter piechaudii ATCC 43553]
Length = 270
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 83/297 (27%), Positives = 126/297 (42%), Gaps = 61/297 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
VAL + Y G + G+ + + + TV+ + AL + ++ + C GRTD GV
Sbjct: 5 VALGLAYDGSAWQGWQTQPHRQ-TVQDTLESALAR----FCGVQDPVPTICAGRTDTGVH 59
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
QV+ + +T + ++E +VR +N LP + V W+
Sbjct: 60 GAMQVVHL-----------------DTSLDRRMES---WVRGVNAFLPPSVSV-QWAQEV 98
Query: 213 TD-FSARFSCISREYKYFFWR----------------ENLNLSAMESAGKKFVGEHDFRN 255
+D F ARFS +R Y Y WR + L++ AM +A + VGEHDF +
Sbjct: 99 SDEFHARFSARARTYVYLLWRGRVRPALWAGRAGWCFQTLDVDAMRAAAQALVGEHDFSS 158
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F H RH+ +I+ E ++ +AFL H VR ++ L +GQ
Sbjct: 159 FRSSQCQAKHPV-RHMHRLDIA------ERGPFLVFTLKANAFLHHMVRNIMGALLQVGQ 211
Query: 316 GLESIDVIESLLD----TNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDL 368
G ES+D + LL T G P AP+ L L S D+ LD G L
Sbjct: 212 GRESVDWMAQLLSLRDRTRGAP-----TFAPD-GLYLSSIDYPAEFGLQELDGGSSL 262
>gi|269218953|ref|ZP_06162807.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269212064|gb|EEZ78404.1| tRNA pseudouridine synthase A [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 310
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 121/292 (41%), Gaps = 44/292 (15%)
Query: 82 MSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY 141
M T+ H + L++ Y G F+G+A + TVE + +AL L+ +
Sbjct: 1 MDSTVAHRLR----LRMSYDGTDFHGWAVQPGLR-TVEGTVTEALN----LITGGSHA-L 50
Query: 142 SRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPK 201
+ GRTD GV + GQV + + N E G+ Q I + + PK
Sbjct: 51 TVAGRTDAGVHARGQVAHVDVSEN--ELARAARRAGDPCQ--AIMRRLSALLARESPGPK 106
Query: 202 ---DIRVIGWSPAPTDFSARFSCISREYKY----------------FFW-RENLNLSAME 241
D+ V G AP F ARFS +SR Y Y W RE L++ AM
Sbjct: 107 GSSDVAVTGVDFAPAGFDARFSALSRTYSYRVCDDPARFDPLRRRDVLWLREPLDVEAMG 166
Query: 242 SAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWH 301
+A +K GEHDF ++CK + T E+ + +G L + R AF
Sbjct: 167 AAARKLTGEHDFISYCK-------PREGATTIRELLELKVERKGG-LVEVTARADAFCHS 218
Query: 302 QVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
VR +V L +G G + L+ R + +AP PL L+S ++
Sbjct: 219 MVRTLVGSLLKVGAGRRDEEWPARRLEERS--RNGEVAVAPPHPLTLESVEY 268
>gi|421527461|ref|ZP_15974062.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum ChDC F128]
gi|402256339|gb|EJU06820.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum ChDC F128]
Length = 245
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 116/277 (41%), Gaps = 48/277 (17%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + ++ Y G +YGF N + TV+ EI K L + K+E + GRTD+G
Sbjct: 3 RKNIKIEFRYDGSSYYGFQRQPN-KITVQGEIEKVLR-----IVTKEEINLISAGRTDRG 56
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y SNI IE Y +L R LP DI ++
Sbjct: 57 VHANHQVSNFYTSSNI-----------------PIEK---YKYLLTRALPNDIDILSVEE 96
Query: 211 APTDFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNF 256
+F+AR + REY Y F +E + +E F+G HDF+NF
Sbjct: 97 VDENFNARHNAKMREYVYIISWEKNPFEARHCKFVKEKIVAEKLEKIFSDFIGIHDFKNF 156
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + VT EI + + G+ I I+GSAFL QVR MV I G
Sbjct: 157 RLSDCVS------KVTIREIYEIEVKYFGDSKIKIYIKGSAFLKSQVRIMVGTALEIYYG 210
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ I+ +L N R+ + N+ L L ++
Sbjct: 211 RLPENRIKLML--NDFTREYKKNLVEAEGLYLNKIEY 245
>gi|134103229|ref|YP_001108890.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL
2338]
gi|291007979|ref|ZP_06565952.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL
2338]
gi|133915852|emb|CAM05965.1| tRNA pseudouridine synthase A [Saccharopolyspora erythraea NRRL
2338]
Length = 296
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 104/244 (42%), Gaps = 38/244 (15%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L+V Y G F+G+A + TV+ + AL K GRTD GV + G
Sbjct: 18 LEVSYDGTDFFGWAKQPDRR-TVQGLLEDALRKQ--PPGRSVPRSVVVAGRTDTGVHATG 74
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVR-VLNRVLPKDIRVIGWSPAPTD 214
QV+ ++ + G +E ++D +R NR+LP D+RV+G AP
Sbjct: 75 QVV------HVDVVPSAPDEGGRLPLDEHGIPDLDRMRHRWNRILPGDVRVLGARVAPAG 128
Query: 215 FSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y+Y W L++ A+ +A + +G +DF FC
Sbjct: 129 FDARFSAMRRHYRYQVSDAPWGVDPLRRRDTLSWNRPLDVDALNAASEDLLGLNDFAAFC 188
Query: 258 KM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
K A V +R S+E + + L ++ AF VR +V L M+G
Sbjct: 189 KQREGATTVRELQRF--SWERAEPH-------LLVARVSADAFCHSMVRSLVGALLMVGD 239
Query: 316 GLES 319
G S
Sbjct: 240 GRRS 243
>gi|210631184|ref|ZP_03296795.1| hypothetical protein COLSTE_00680 [Collinsella stercoris DSM 13279]
gi|210160151|gb|EEA91122.1| tRNA pseudouridine synthase A [Collinsella stercoris DSM 13279]
Length = 281
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 111/259 (42%), Gaps = 59/259 (22%)
Query: 79 KEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE 138
E + GTL ++ Y G F GFA ++ TV E +ALE T L ++
Sbjct: 17 PEVLDGTL--------VFRLGYDGAGFSGFAEQPDVR-TVAGEARRALE-TFL----RRP 62
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRV 198
+ GRTD GV ++ Q +++ +EE + ++R + +
Sbjct: 63 IDMTCAGRTDAGVHAISQYVSVPAH-----------------REELAIEHRRWMRAMAAL 105
Query: 199 LPKDIRVIGWSPAPTDFSARFSCISREYKY---------------FFW-RENLNLSAMES 242
LP DI + G A FSARF SR Y Y +W R L++ AME+
Sbjct: 106 LPDDIALSGVYHAAPGFSARFDARSRTYTYRIATGDARPLLTRNVTWWHRLPLDVEAMEA 165
Query: 243 AGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFE-----GNQLCAIKIRGSA 297
VGEHDF++FCKM +A R+V S +SF G A I G+A
Sbjct: 166 GAVHLVGEHDFKSFCKMSSAVGKPTCRNVIS-------VSFAREQALGEDHLAFTITGNA 218
Query: 298 FLWHQVRCMVAVLFMIGQG 316
FL VR +V L +G G
Sbjct: 219 FLHSMVRTIVGTLVEVGAG 237
>gi|449476909|ref|XP_002194956.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial
[Taeniopygia guttata]
Length = 401
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 131/287 (45%), Gaps = 51/287 (17%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL ++ + D K+ + RC
Sbjct: 54 KRKIVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVQSGCIPENHGEDMKKMSFQRC 113
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQ++++ +R + D+I + +N LP IR
Sbjct: 114 ARTDKGVSAAGQIVSLKVR---------------------LIDDI--LEKINNHLPSHIR 150
Query: 205 VIGWSPAPTDFSARFSCISREYKY------FFWREN--------LNLSAMESAGKK---F 247
++G F+++ C +R Y Y F +++ L+ +E + +
Sbjct: 151 ILGLKRVTGGFNSKNKCDARTYSYMLPTFAFAHKDHDVQEELFRLDRDTLERVNRLLACY 210
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + KR++ ++ E + I++RG +F+ HQ+R M+
Sbjct: 211 KGTHNFHNFTSQKGPRDPSAKRYIMEMYCGEPFVR-ENVEFAVIQVRGQSFMMHQIRKMI 269
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
++ I +G + ES+++ + K AP + LVL+ F+
Sbjct: 270 GLVIAIVKGYAA----ESIMERSWGEEKVDVPKAPGLGLVLEKVHFE 312
>gi|291562779|emb|CBL41595.1| pseudouridylate synthase I [butyrate-producing bacterium SS3/4]
Length = 255
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 123/287 (42%), Gaps = 48/287 (16%)
Query: 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
K + + + Y G R+ G+ GN + T++ ++ L + + ++ E H S GRTD
Sbjct: 1 MKNNIRITLEYDGSRYDGWQKQGNTDNTIQGKLENVLFR---MAGEEIEVHGS--GRTDA 55
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV + GQV ++ + I C GE +E LNR LP DIRV+
Sbjct: 56 GVHARGQVANFHINAEI--CPD-----GEAARE-----------YLNRYLPDDIRVLSAK 97
Query: 210 PAPTDFSARFSCISREYKYF---------FWR-------ENLNLSAMESAGKKFVGEHDF 253
P F +R S S+ Y Y+ F R + L++ AM A + +GEHDF
Sbjct: 98 IVPERFHSRLSATSKTYGYYVETGDKKNVFERKYVYGCGKKLDVKAMRQAAEFLIGEHDF 157
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
++FC AN K V I I G +L + G+ FL++ VR + L +
Sbjct: 158 KSFC----ANRRMKKSTVR--RIDEIRIVEHGTKLEFLYT-GNGFLYNMVRILTGTLLEV 210
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTC 360
G G + ++ ++ R AP L L ++G + T
Sbjct: 211 GSGTRRPEKMKEIIAAKN--RDMAGRTAPPEGLFLLHVGYEGERETV 255
>gi|15612730|ref|NP_241033.1| tRNA pseudouridine synthase A [Bacillus halodurans C-125]
gi|8134764|sp|Q9Z9J0.1|TRUA_BACHD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|4512436|dbj|BAA75303.1| truA [Bacillus halodurans]
gi|10172779|dbj|BAB03886.1| tRNA pseudouridine synthase A (pseudouridylate synthase I)
[Bacillus halodurans C-125]
Length = 263
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 108/250 (43%), Gaps = 48/250 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ LKV Y G F G+ N E TV+ E+ L+ + + GRTD GV +
Sbjct: 4 IGLKVAYDGTDFAGYQIQPN-ERTVQGELESVLKN----IHKGMSIRVTASGRTDTGVHA 58
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQ++ + S+ V I LN LP DI V+ + P
Sbjct: 59 RGQIVHF------------DTSLSFPVDRWPI--------ALNSQLPADICVLEAADVPA 98
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF AR+S ++EY+Y + R L++ AM+ A + +G HDF +FC
Sbjct: 99 DFHARYSAKTKEYRYRVLTSAQADVFRRNYTYHVRYPLDVEAMQRAAVQLLGTHDFSSFC 158
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
A V + R I + EG++L IRG+ FL++ VR +V L IG G
Sbjct: 159 AAK-AEVEDKVR-----TIEDVALWREGDELI-FSIRGNGFLYNMVRIIVGTLLEIGAGK 211
Query: 318 ESIDVIESLL 327
S + + +L
Sbjct: 212 RSAEEVAKIL 221
>gi|195498243|ref|XP_002096440.1| GE25055 [Drosophila yakuba]
gi|194182541|gb|EDW96152.1| GE25055 [Drosophila yakuba]
Length = 410
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 96/406 (23%), Positives = 169/406 (41%), Gaps = 78/406 (19%)
Query: 1 MSEAKQELISSLQSQLEALQNRVKELEADNAKLLSKL--SLCRCEKIEDKVHDGVEDGTT 58
MSEA + L+ + EA + KELE++ K +++ +L R + ++ K
Sbjct: 1 MSEA----LDKLEVEKEA-RKEAKELESEAVKEANRIKRTLKRKKWVDWK---------- 45
Query: 59 LVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTV 118
E++ K + G K E++ ++ A+ + Y G FYG + M+ T+
Sbjct: 46 --EQDEKDAANGVKRAPFDPAERIK-------RKKSAILLSYCGANFYGMQRNPGMQ-TI 95
Query: 119 ESEIFKALEKTRLLVADKKE----SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNA 174
E E+FK + K + + + E S + R RTDKGVS+ QV ++
Sbjct: 96 EEELFKVMLKHKWITEESFEQIQISCFQRAARTDKGVSAARQVCSV-------------- 141
Query: 175 SMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR-- 232
++ +E+D + N LP+ IR+ G F+A+ C +R Y Y
Sbjct: 142 ---------KLPEELD-LEAFNADLPQQIRLFGVERVTKGFNAKDQCNARTYTYTLPTVA 191
Query: 233 --------ENLN---------LSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFE 275
E+L+ L ++ K + G +F NF + + KR + SF
Sbjct: 192 FASFEEKVEDLHDTFQISPELLQKVKETLKLYEGTKNFHNFTSKKSFLDPSSKRFIMSFT 251
Query: 276 ISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRK 335
S + S +G + + ++G +F+ HQ+R MV + I +G + +E L +
Sbjct: 252 SSEPFRSPQGIEFVTLNVKGQSFMLHQIRKMVGLAIAIVRGNTTAATLERALTEERL--- 308
Query: 336 PQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQL 381
MAP + LVL + ++ D H+ E QV +
Sbjct: 309 -DLPMAPGLGLVLDTVHYERYNDRYGKDGIHNPLTWQAQEAQVQKF 353
>gi|423543905|ref|ZP_17520263.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB5-5]
gi|423626368|ref|ZP_17602145.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD148]
gi|401185609|gb|EJQ92701.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB5-5]
gi|401252547|gb|EJR58805.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD148]
Length = 245
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 124/283 (43%), Gaps = 56/283 (19%)
Query: 88 HHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRT 147
H++K L + Y G R+ G+ GN + T++ +I + + +V KE C RT
Sbjct: 2 HNYK----LTIQYDGARYKGWQRLGNNDNTIQGKIESVISE---MVG--KEIEIIGCSRT 52
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D GV ++ QV +N K E+ +E ++ + LN+ LP DI +
Sbjct: 53 DAGVHALNQV------ANFKS------------DEKLVEHKVK--KYLNQYLPNDISITS 92
Query: 208 WSPAPTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEH 251
P F AR++ ++ Y Y W E LN+ +M+ A K VG H
Sbjct: 93 VEEVPDRFHARYNSKAKTYLYKIWNEEHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSH 152
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
DF F + + R V + E+S E I++ G+ FL + VR +V L
Sbjct: 153 DFTAFSNAKSKK-KSMVREVYTLEVS------EEAGFVQIRVSGNGFLHNMVRKIVGALI 205
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
+G G ++ I ++L+ ++ Q N +A L L+S +F
Sbjct: 206 EVGLGQLDVEAIPNILEE---KQRNQINCLAEASGLYLESVEF 245
>gi|260495597|ref|ZP_05815722.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_33]
gi|260196939|gb|EEW94461.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_33]
Length = 245
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 114/274 (41%), Gaps = 48/274 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ ++ Y G R+YGF N + TV+ EI K L + K+E + GRTD+GV +
Sbjct: 6 IKIEFRYDGSRYYGFQRQPN-KITVQGEIEKILR-----IVTKEEINLISAGRTDRGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV Y S I IE Y +L R LP DI ++
Sbjct: 60 NHQVSNFYTSSTI-----------------PIEK---YKYLLTRALPNDIDILSVEEVDK 99
Query: 214 DFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
+F+AR + REY Y F +E +++ +E FVG HDF+NF
Sbjct: 100 NFNARHNAKMREYVYIISWEKNPFEARYYKFVKEKIDVRKLEKIFSDFVGVHDFKNFRLN 159
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
D + VT +I + + G I I+GSAFL QVR MV I G
Sbjct: 160 DCVS------KVTIRKIYQIEVKYFGESKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLP 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ I +L N R+ + N+ L L ++
Sbjct: 214 ENHIRLML--NDFTREYKKNLVEAEGLYLNKINY 245
>gi|384917179|ref|ZP_10017310.1| tRNA pseudouridine synthase A [Methylacidiphilum fumariolicum SolV]
gi|384525438|emb|CCG93183.1| tRNA pseudouridine synthase A [Methylacidiphilum fumariolicum SolV]
Length = 257
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 116/270 (42%), Gaps = 50/270 (18%)
Query: 100 YFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIA 159
Y G F+G+ G + PTV+ + +A+ K + E H RTD GV + GQV +
Sbjct: 14 YCGTGFHGWQKQGQL-PTVQRFLEEAVAKIW-----QTEIHIEGASRTDAGVHAKGQVAS 67
Query: 160 IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
+ ++E E+ R LN LP+ IRV+ +F ARF
Sbjct: 68 F-------------------IAPRKLEAEV-LQRALNYYLPETIRVLHIRVVSKEFHARF 107
Query: 220 SCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKMDAAN 263
IS+ Y+Y+ W + L+L +M A FVG+ DF +F
Sbjct: 108 HAISKTYQYWIWNDPVMDPFYLWRAWHIPRQLDLQSMNEAATLFVGKKDFASFVSSPGFV 167
Query: 264 VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVI 323
+ + R T F+ C + +G QLC I+ + FL+ VR +V L IG G ++ +
Sbjct: 168 LKDTIR--TVFD---CGFTVQG-QLCLFTIKANGFLYRMVRNIVGALVKIGLGRLDLEKL 221
Query: 324 ESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ + ++ RK AP L L D+
Sbjct: 222 KDIFESKN--RKLSPASAPPWGLYLLKVDY 249
>gi|351698591|gb|EHB01510.1| tRNA pseudouridine synthase A [Heterocephalus glaber]
Length = 420
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 144/343 (41%), Gaps = 51/343 (14%)
Query: 91 KRYVALKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G S + T+E ++ AL + + D ++ + RC
Sbjct: 79 KRKIVLLMAYSGKGYHGMQRNSGSSKFKTIEDDLVSALVRAGCIPESHGEDMRKMSFQRC 138
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + IED +D + N LP IR
Sbjct: 139 ARTDKGVSAAGQVVSLKV--------------------WLIEDLLDKI---NSHLPSHIR 175
Query: 205 VIGWSPAPTDFSARFSCISREYKYFF------------WRENLNLSA--MESAGKKFV-- 248
++G F+++ C +R Y Y E LSA ++ +
Sbjct: 176 ILGLRRVTGGFNSKNKCDARTYFYMLPTFAFAHKDRDVQDETYRLSAETLQQVNRLLACH 235
Query: 249 -GEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + + +R+V P + EG + IK++G +F+ HQ+R MV
Sbjct: 236 KGTHNFHNFTSQKGPHEPSARRYVLEMYCEPPF-EREGLEFAVIKVKGQSFMMHQIRKMV 294
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
++ I +G ES+L + K AP + LVL+ F+ D H+
Sbjct: 295 GLVVAIVKGYAP----ESVLACSWGEAKVDVPKAPGLGLVLERVHFETYNQRFGGDGLHE 350
Query: 368 LRLHLRNECQVYQLQAAIFHEALLNCLPLANGLEIGSSLIHLH 410
++ E +V + + ++++ + S +H+H
Sbjct: 351 PLDWVQEEAKVVAFKEQHIYPSIVSTERHERSMAQWLSTLHIH 393
>gi|312127288|ref|YP_003992162.1| tRNA pseudouridine synthase a [Caldicellulosiruptor hydrothermalis
108]
gi|311777307|gb|ADQ06793.1| tRNA pseudouridine synthase A [Caldicellulosiruptor hydrothermalis
108]
Length = 244
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 50/248 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G ++G+ N + T++ I +A++K +E + GRTD+GV
Sbjct: 2 RNILLTIEYDGTEYFGWQKQPNKK-TIQGTIEEAIKKLT-----GEEVNLIGSGRTDRGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++ Q ++N K + +I + + LN VLP DI +
Sbjct: 56 HALNQ------KANFKTSS-------------KIPTD-KFPLALNSVLPGDISIKDAVEV 95
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P +FSAR+S + YKY + +N L++ AM+ A + F+GE+DF++
Sbjct: 96 PLNFSARYSAKQKTYKYLIYNKNSRPALLRNYAYYYPYQLDVDAMQRACEYFIGEYDFKS 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC D+ +R S Y++FE N+ AI I + FL++ R + + +G
Sbjct: 156 FCSADSEAKTTIRRVYNS------YLTFE-NECIAIYITANGFLYNMARIIAGTILDVGA 208
Query: 316 G-LESIDV 322
G L+ +D+
Sbjct: 209 GKLKPMDI 216
>gi|256846563|ref|ZP_05552020.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_36A2]
gi|256718332|gb|EEU31888.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_36A2]
Length = 245
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 99/237 (41%), Gaps = 46/237 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ ++ Y G R+YGF + TV+ EI K L + K+E + GRTD+GV +
Sbjct: 6 IKIEFRYDGSRYYGFQRQPK-KITVQGEIEKILR-----IVTKEEINLISAGRTDRGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV Y SNI IE Y +L R LP DI ++
Sbjct: 60 YHQVSNFYTSSNI-----------------PIE---KYKYLLTRALPNDIDILSVEEVDE 99
Query: 214 DFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
+F+AR + REY Y F +E + + +E FVG HDF+NF
Sbjct: 100 NFNARHNAKMREYIYIISWEKNPFEARYCKFVKEKIVVEKLEKIFSDFVGVHDFKNFRLN 159
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + +T EI + + G I I+GSAFL QVR MV I G
Sbjct: 160 DCVS------KITIREIYQIEVKYFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYG 210
>gi|398784960|ref|ZP_10548081.1| tRNA pseudouridine synthase A [Streptomyces auratus AGR0001]
gi|396994850|gb|EJJ05877.1| tRNA pseudouridine synthase A [Streptomyces auratus AGR0001]
Length = 284
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 108/259 (41%), Gaps = 49/259 (18%)
Query: 82 MSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY 141
MS + F R V L + Y G F G+A TV+ EI AL R + K+
Sbjct: 1 MSDEVEPGFVR-VRLDLSYDGAEFSGWAKQAGGRRTVQGEIEDAL---RTVTRSKETYEL 56
Query: 142 SRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPK 201
+ GRTD GV + GQV + L + + + + +R L LPK
Sbjct: 57 TVAGRTDAGVHARGQVAHVDLPAEVWAEHADK-----------------LLRRLAGRLPK 99
Query: 202 DIRVIGWSPAPTDFSARFSCISREYKY----------------FFWRE-NLNLSAMESAG 244
D+RV + AP F+ARFS I R Y Y W + L++ AM A
Sbjct: 100 DVRVWRVAEAPYGFNARFSAIWRRYAYRVTDHHGGVDPLLRSHVLWHDWELDVDAMNEAS 159
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFE--GNQLCAIKIRGSAFLWHQ 302
+ +GEHDF +CK +R + + +S+E + + +R AF +
Sbjct: 160 RPLLGEHDFAAYCK---------RREGATTIRTLQELSWERGADGIITATVRADAFCHNM 210
Query: 303 VRCMVAVLFMIGQGLESID 321
VR +V + +G G + D
Sbjct: 211 VRSLVGAMLFVGDGHRAPD 229
>gi|260579203|ref|ZP_05847093.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium ATCC 43734]
gi|258602689|gb|EEW15976.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium ATCC 43734]
Length = 328
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 108/269 (40%), Gaps = 44/269 (16%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L+V Y G F+G+A+ TV + + +L + + GRTD GV +
Sbjct: 31 VRLEVAYDGTDFHGWATQSGGLRTVAGVL-----QEKLSLVTRHPIELVVAGRTDAGVHA 85
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV C+ + + + ++ + D VR L+R+LP D+R+ G S AP
Sbjct: 86 SGQV-----------CHADIPA--DAFEQRSLTRPEDLVRRLSRMLPSDVRLHGASVAPQ 132
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y WR ++L ++A +G +DF F
Sbjct: 133 GFDARFSALRRHYIYRVTTHPAGPVPVRARDTAAWRHPIDLEKTQAASDALIGLNDFAAF 192
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGN-QLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK A R + F +S E Q + AF W VR +V +G
Sbjct: 193 CK--AREGATTVRELQEFRW--VDVSTEAEPQTYEAHVTADAFCWSMVRSLVGAALTVGS 248
Query: 316 GLESIDVIESLLD----TNGIPRKPQYNM 340
G D LL ++ +P P +
Sbjct: 249 GKRPDDFTPGLLKETKRSSAVPVAPAEGL 277
>gi|321464083|gb|EFX75094.1| hypothetical protein DAPPUDRAFT_12957 [Daphnia pulex]
Length = 319
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/277 (25%), Positives = 123/277 (44%), Gaps = 46/277 (16%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKES----HYSRCGR 146
K+ A+ + Y GQ + G + + TVE E+F+A K ++ + +S H+ R R
Sbjct: 2 KKKFAILLSYSGQNYLGMQFNHGFK-TVEGELFQAFMKLEIMDDESFKSPQTVHFQRAAR 60
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+V QVI++ +R+ DE D V LN +LP I+V
Sbjct: 61 TDKGVSAVRQVISLKIRT---------------------PDE-DLVNQLNSLLPNCIKVF 98
Query: 207 GWSPAPTDFSARFSCISREYKY------FFWRE----------NLNLSAMESAGKKFVGE 250
F+++ +C SR Y Y F +E + L + S F G
Sbjct: 99 AMRKVTGGFNSKIACDSRSYSYVMPTFAFTSKEVAPTHGYRVTSKILDEVNSLLSVFKGT 158
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
++ NF A + KR++T F ++ E + I I+G +F+ HQ+R M+ +
Sbjct: 159 RNYHNFTSGRPAQDPSCKRYITQFSCGDPFMIKE-VEFVKITIKGQSFMLHQIRKMIGLT 217
Query: 311 FMIGQGLESIDVIESL--LDTNGIPRKPQYNMAPEIP 345
+ +G ++++ ++ +P P N+ E P
Sbjct: 218 ISVMRGFVPREILDKAFKMERVNVPTAPSLNLLLEEP 254
>gi|433636546|ref|YP_007270173.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070017]
gi|432168139|emb|CCK65671.1| tRNA pseudouridine synthase A [Mycobacterium canettii CIPT
140070017]
Length = 297
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 106/276 (38%), Gaps = 41/276 (14%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ TV ++ AL + GRTD GV + G
Sbjct: 26 LDIAYDGTDFAGWAAQVGQR-TVAGDLDAALTTIF-----RTPVRLRAAGRTDAGVHASG 79
Query: 156 QVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
QV + + ++ + +G+ + + +R L R LP D+R++ + AP
Sbjct: 80 QVAHVDVPADALPNAYPRAGHVGD-------PEFLPLLRRLGRFLPADVRILDITRAPAG 132
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y Y W L+L AM +A + +G HDF FC
Sbjct: 133 FDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASRDLMGLHDFAAFC 192
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+ R + + S L + AF W VR +V L +G+
Sbjct: 193 RHREGT--TTIRDLQRLDWS------RAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHR 244
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL G R + +AP L L D+
Sbjct: 245 RATTWCRELLTATG--RSSDFAVAPAHGLTLIQVDY 278
>gi|418882181|ref|ZP_13436385.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377718090|gb|EHT42262.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1769]
Length = 267
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
I + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEISDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|258422666|ref|ZP_05685571.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9635]
gi|417890893|ref|ZP_12534961.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21200]
gi|418283865|ref|ZP_12896602.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21202]
gi|418307469|ref|ZP_12919176.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21194]
gi|418887455|ref|ZP_13441594.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1524]
gi|418992210|ref|ZP_13539855.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG290]
gi|257847077|gb|EEV71086.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9635]
gi|341853771|gb|EGS94651.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21200]
gi|365165776|gb|EHM57525.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21202]
gi|365245613|gb|EHM86235.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21194]
gi|377749527|gb|EHT73475.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG290]
gi|377756068|gb|EHT79965.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 267
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNKAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
I + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEISDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|290987319|ref|XP_002676370.1| predicted protein [Naegleria gruberi]
gi|284089972|gb|EFC43626.1| predicted protein [Naegleria gruberi]
Length = 477
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 113/271 (41%), Gaps = 70/271 (25%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKES----HYSRC 144
R VA+ + Y G + G + P TVE +FKAL + + D H+ R
Sbjct: 116 RRVAIFIGYLGTNYNGSQTSNFTNPNVKTVEETVFKALCQAGGVSGDNSTDMNKVHFHRS 175
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGV + V+ + L M ++EE + ++LP+DI
Sbjct: 176 SRTDKGVHAASNVLEMKLL------------MKPGLEEE-----------MRKLLPEDIV 212
Query: 205 VIGWSPAPTDFSARFSCISREYKYFF-------------W---------------RENLN 236
G+ F+A+ C +R Y+Y W ENLN
Sbjct: 213 FYGYKKVSKSFNAKEHCTARTYEYLLPAFALSPDPKAATWFGQINIDKITKEDVESENLN 272
Query: 237 --------LSAMESAG---KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEG 285
+E A K FVG + F N+ ++ A +++ RH+T FE S + +G
Sbjct: 273 DIYNYDPTDEQIEKANRVLKNFVGTNSFHNYTQLTKAKPNSFNRHITKFECSKAF-EIDG 331
Query: 286 NQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
++ + + GS+F+++Q+R MV + + +G
Sbjct: 332 MKVVKLTVTGSSFIYNQIRKMVGFMIAVMRG 362
>gi|318079697|ref|ZP_07987029.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actF]
Length = 282
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F+G+A TV+ + +AL R++ + GRTD GV + G
Sbjct: 3 LDLSYDGTDFHGWARQPGGRRTVQETLEEAL---RVVTRAPAPYELTVAGRTDAGVHARG 59
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + M + V E E + R+ R LPKD+RV +PAP F
Sbjct: 60 QVAHV--------------GMADEVWAEHGEKLLK--RLAGR-LPKDVRVWRVAPAPEGF 102
Query: 216 SARFSCISREYKY----------------FFWREN-LNLSAMESAGKKFVGEHDFRNFCK 258
ARFS I R Y Y W + L++ AM A + +GEHDF +CK
Sbjct: 103 DARFSAIWRRYAYRVADQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCK 162
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ T E+ + + + + +R AF + VR +V L +G G
Sbjct: 163 -------KREGATTIREMQQLFWTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDG 213
>gi|302519630|ref|ZP_07271972.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78]
gi|318058099|ref|ZP_07976822.1| tRNA pseudouridine synthase A [Streptomyces sp. SA3_actG]
gi|302428525|gb|EFL00341.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB78]
Length = 284
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F+G+A TV+ + +AL R++ + GRTD GV + G
Sbjct: 5 LDLSYDGTDFHGWARQPGGRRTVQETLEEAL---RVVTRAPAPYELTVAGRTDAGVHARG 61
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + M + V E E + R+ R LPKD+RV +PAP F
Sbjct: 62 QVAHV--------------GMADEVWAEHGEKLLK--RLAGR-LPKDVRVWRVAPAPEGF 104
Query: 216 SARFSCISREYKY----------------FFWREN-LNLSAMESAGKKFVGEHDFRNFCK 258
ARFS I R Y Y W + L++ AM A + +GEHDF +CK
Sbjct: 105 DARFSAIWRRYAYRVADQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCK 164
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ T E+ + + + + +R AF + VR +V L +G G
Sbjct: 165 -------KREGATTIREMQQLFWTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDG 215
>gi|441516689|ref|ZP_20998435.1| tRNA pseudouridine synthase A [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441456395|dbj|GAC56396.1| tRNA pseudouridine synthase A [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 279
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 106/275 (38%), Gaps = 54/275 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEP---TVESEIFKALE-KTRLLVADKKESHYSRCGRTDKGV 151
L + Y G F G+A+ T+E+ + L RL VA GRTD GV
Sbjct: 3 LLIGYDGTDFSGWATQPGRRTVCQTLETALGTVLRVPVRLTVA----------GRTDAGV 52
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV + + + + D VR L ++LP D+R+
Sbjct: 53 HATGQVAHFDVPAAALATRSIDG------------DPARLVRRLAKLLPADVRIKQVDAV 100
Query: 212 PTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFR 254
DF ARFS ++R Y+Y W L++ AM A +G HDF
Sbjct: 101 SADFDARFSALARRYEYRLADAPWGAEPVVARRTGEWTRRLDVEAMNDAAATLLGLHDFA 160
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAI-KIRGSAFLWHQVRCMVAVLFMI 313
FC+ Y+ T+ + G+ I +++ AF W VR +V + +
Sbjct: 161 AFCR--------YREGATTIRQLQEFRWHRGDDGVLIARVKADAFCWSMVRSLVGAVASV 212
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
G G I LLD R PQ +AP L L
Sbjct: 213 GDGRRDIGWCAGLLDERA--RSPQVPVAPACGLAL 245
>gi|333026542|ref|ZP_08454606.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071]
gi|332746394|gb|EGJ76835.1| putative tRNA pseudouridine synthase A [Streptomyces sp. Tu6071]
Length = 284
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F+G+A TV+ + +AL R++ + GRTD GV + G
Sbjct: 5 LDLSYDGTDFHGWARQPGGRRTVQETLEEAL---RVVTRAPAPYELTVAGRTDAGVHARG 61
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + M + V E E + R+ R LPKD+RV +PAP F
Sbjct: 62 QVAHV--------------GMADEVWAEHGEKLLK--RLAGR-LPKDVRVWRVAPAPEGF 104
Query: 216 SARFSCISREYKY----------------FFWREN-LNLSAMESAGKKFVGEHDFRNFCK 258
ARFS I R Y Y W + L++ AM A + +GEHDF +CK
Sbjct: 105 EARFSAIWRRYAYRVADQAGGVDPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCK 164
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ T E+ + + + + +R AF + VR +V L +G G
Sbjct: 165 -------KREGATTIREMQQLFWTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDG 215
>gi|319950123|ref|ZP_08024062.1| tRNA pseudouridine synthase A [Dietzia cinnamea P4]
gi|319436208|gb|EFV91389.1| tRNA pseudouridine synthase A [Dietzia cinnamea P4]
Length = 380
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 113/285 (39%), Gaps = 46/285 (16%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPT---VESEIFKALEKTRLLVADKKESHYSRCGRTD 148
R + L V Y G F G+A + +E+E+ L +L GRTD
Sbjct: 4 RRIRLDVAYDGTDFSGWARQPGLRTVCGVLEAELSTVLRHPVVLTV---------AGRTD 54
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
GV + R+ + + + A + + + + E VR L R+LP DI V+
Sbjct: 55 AGV---------HARAQVCHLDVDPAWLDQRSLDGRPEA---LVRRLARLLPADIAVMDG 102
Query: 209 SPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEH 251
P +F ARFS + R Y+Y W +L A+ +A ++ +G H
Sbjct: 103 RWVPDEFDARFSALRRHYEYRLTTAPWGAEPIRARDTAAWTRTADLEAVRAASERLLGLH 162
Query: 252 DFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEG-NQLCAIKIRGSAFLWHQVRCMVA 308
DF FC+ A + +R E P G ++ + AF W VR +V
Sbjct: 163 DFAAFCRRREGATTIRELQRFEWRTEPDPRGPDAPGAAEVWTASVSADAFCWSMVRSLVG 222
Query: 309 VLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ +G+G S++ I LL R +AP L L D+
Sbjct: 223 AVMAVGEGRRSLEWISGLLAET--ERSSAVPVAPACGLSLIGVDY 265
>gi|399577836|ref|ZP_10771588.1| pseudouridylate synthase i [Halogranum salarium B-1]
gi|399237278|gb|EJN58210.1| pseudouridylate synthase i [Halogranum salarium B-1]
Length = 280
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 109/276 (39%), Gaps = 48/276 (17%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADK-KESHYSRCGRTDKGVSS 153
A +V Y G+ ++GF ++ TVE +F AL + +L D + + Y+ GRTD GVS+
Sbjct: 3 AFRVAYDGRPYFGFQRQPSVS-TVEDTLFDALRRLDVLDEDAHRPTGYAAAGRTDAGVSA 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
V Q +A EC E R LN LP ++R +
Sbjct: 62 VAQTVAF-------ECP-----------------EWCTPRALNSELPGNVRAWAAADVDD 97
Query: 214 DFSARFSCISREYKYFFW-----------RENLNLSAMESAGKKFVGEHDFRNFCKMDAA 262
DF A I R+Y Y + R +++ A GEHDF N +
Sbjct: 98 DFHATHDAIRRQYTYHLYAPRAGTESLDGRPHVDDQRAREALDALSGEHDFHNLTLDETG 157
Query: 263 NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322
V + S E+ I + F VR +V+V+ IG G +D
Sbjct: 158 TVRD-----VSGEL------VRDGDFLEIHVESGGFARELVRRLVSVVRCIGSGDAPLDT 206
Query: 323 IESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
+E +L + + AP PLVL D+ G+ F
Sbjct: 207 VERVLGPEVLEGREGIPSAPPTPLVLTGVDYPGVTF 242
>gi|385782454|ref|YP_005758625.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
11819-97]
gi|418573033|ref|ZP_13137233.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21333]
gi|364523443|gb|AEW66193.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
11819-97]
gi|371983120|gb|EHP00267.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21333]
Length = 267
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
I + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEISDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|295838433|ref|ZP_06825366.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74]
gi|197695769|gb|EDY42702.1| tRNA pseudouridine synthase A [Streptomyces sp. SPB74]
Length = 284
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 100/238 (42%), Gaps = 44/238 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F+G+A TV+ + +AL R++ + + GRTD GV + G
Sbjct: 5 LDLSYDGTEFHGWARQPAGRRTVQETLEEAL---RVVTRAPEPYELTVAGRTDAGVHARG 61
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + M + V E E + R+ R LPKD+RV +PAP F
Sbjct: 62 QVAHV--------------EMADEVWAEHGEKLLK--RLAGR-LPKDVRVWRVAPAPEGF 104
Query: 216 SARFSCISREYKY----------------FFWREN-LNLSAMESAGKKFVGEHDFRNFCK 258
ARFS I R Y Y W + L++ AM A + +GEHDF +CK
Sbjct: 105 DARFSAIWRRYAYRVADQPGGADPLLRGHVLWHDRPLDIDAMNEAAEGLLGEHDFAAYCK 164
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ T E+ + + + + +R AF + VR +V L +G G
Sbjct: 165 -------KREGATTIREMQRLFWTRRADGVLEATVRADAFCHNMVRSLVGALLFVGDG 215
>gi|15925209|ref|NP_372743.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927799|ref|NP_375332.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
N315]
gi|148268659|ref|YP_001247602.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
JH9]
gi|150394724|ref|YP_001317399.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
JH1]
gi|156980534|ref|YP_001442793.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Mu3]
gi|253316980|ref|ZP_04840193.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|253734372|ref|ZP_04868537.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006999|ref|ZP_05145600.2| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257794565|ref|ZP_05643544.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9781]
gi|258408833|ref|ZP_05681117.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9763]
gi|258422432|ref|ZP_05685344.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9719]
gi|258439820|ref|ZP_05690566.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9299]
gi|258442624|ref|ZP_05691184.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8115]
gi|258446678|ref|ZP_05694833.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6300]
gi|258450204|ref|ZP_05698296.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6224]
gi|258455424|ref|ZP_05703384.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5937]
gi|269203852|ref|YP_003283121.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ED98]
gi|282893658|ref|ZP_06301890.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8117]
gi|282926765|ref|ZP_06334392.1| tRNA pseudouridine synthase A [Staphylococcus aureus A10102]
gi|295404895|ref|ZP_06814708.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8819]
gi|296275990|ref|ZP_06858497.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MR1]
gi|297243953|ref|ZP_06927843.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8796]
gi|384865401|ref|YP_005750760.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|386729925|ref|YP_006196308.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
71193]
gi|387151342|ref|YP_005742906.1| tRNA pseudouridine synthase A [Staphylococcus aureus 04-02981]
gi|387603503|ref|YP_005735024.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST398]
gi|404479513|ref|YP_006710943.1| tRNA pseudouridine synthase [Staphylococcus aureus 08BA02176]
gi|415692928|ref|ZP_11454819.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CGS03]
gi|417652751|ref|ZP_12302489.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21172]
gi|417801788|ref|ZP_12448870.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21318]
gi|417893284|ref|ZP_12537319.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21201]
gi|417898958|ref|ZP_12542870.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21259]
gi|418310914|ref|ZP_12922445.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21331]
gi|418425383|ref|ZP_12998475.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS1]
gi|418428274|ref|ZP_13001261.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS2]
gi|418431159|ref|ZP_13004058.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS3a]
gi|418435066|ref|ZP_13006915.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437833|ref|ZP_13009608.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS5]
gi|418440765|ref|ZP_13012449.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS6]
gi|418443735|ref|ZP_13015320.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446734|ref|ZP_13018194.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS8]
gi|418449823|ref|ZP_13021192.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS9]
gi|418452657|ref|ZP_13023978.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS10]
gi|418455617|ref|ZP_13026865.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS11a]
gi|418458493|ref|ZP_13029681.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS11b]
gi|418568426|ref|ZP_13132772.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21272]
gi|418639981|ref|ZP_13202219.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-3]
gi|418653587|ref|ZP_13215525.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-99]
gi|418663065|ref|ZP_13224593.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-122]
gi|418876426|ref|ZP_13430668.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881907|ref|ZP_13436117.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884830|ref|ZP_13438986.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1150]
gi|418892998|ref|ZP_13447103.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418912801|ref|ZP_13466775.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418918285|ref|ZP_13472234.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC348]
gi|418929662|ref|ZP_13483514.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1750]
gi|418980670|ref|ZP_13528444.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
DR10]
gi|418989425|ref|ZP_13537089.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419786222|ref|ZP_14311959.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus IS-M]
gi|424774939|ref|ZP_18201940.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CM05]
gi|443635866|ref|ZP_21119985.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus 21236]
gi|448745037|ref|ZP_21726912.1| tRNA pseudouridine synthase A [Staphylococcus aureus KT/Y21]
gi|54039782|sp|P65849.1|TRUA_STAAN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|54042087|sp|P65848.1|TRUA_STAAM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|166229841|sp|A7X5B5.1|TRUA_STAA1 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189029998|sp|A5IV03.1|TRUA_STAA9 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189030146|sp|A6U3U4.1|TRUA_STAA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|13702019|dbj|BAB43311.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
N315]
gi|14247992|dbj|BAB58381.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Mu50]
gi|147741728|gb|ABQ50026.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
JH9]
gi|149947176|gb|ABR53112.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
JH1]
gi|156722669|dbj|BAF79086.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Mu3]
gi|253727689|gb|EES96418.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
TCH130]
gi|257788537|gb|EEV26877.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9781]
gi|257840516|gb|EEV64976.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9763]
gi|257841863|gb|EEV66300.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9719]
gi|257847596|gb|EEV71598.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9299]
gi|257851745|gb|EEV75679.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8115]
gi|257854746|gb|EEV77694.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6300]
gi|257856296|gb|EEV79205.1| tRNA pseudouridine synthase A [Staphylococcus aureus A6224]
gi|257862635|gb|EEV85403.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5937]
gi|262076142|gb|ACY12115.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ED98]
gi|282591216|gb|EFB96289.1| tRNA pseudouridine synthase A [Staphylococcus aureus A10102]
gi|282763716|gb|EFC03844.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8117]
gi|283471441|emb|CAQ50652.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST398]
gi|285817881|gb|ADC38368.1| tRNA pseudouridine synthase A [Staphylococcus aureus 04-02981]
gi|294969840|gb|EFG45858.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8819]
gi|297178731|gb|EFH37976.1| tRNA pseudouridine synthase A [Staphylococcus aureus A8796]
gi|312830568|emb|CBX35410.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315129701|gb|EFT85692.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CGS03]
gi|329723462|gb|EGG59991.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21172]
gi|334276049|gb|EGL94317.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21318]
gi|341846887|gb|EGS88075.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21259]
gi|341855480|gb|EGS96325.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21201]
gi|365235704|gb|EHM76615.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21331]
gi|371979655|gb|EHO96881.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21272]
gi|375015599|gb|EHS09246.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-3]
gi|375018775|gb|EHS12345.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-99]
gi|375035058|gb|EHS28197.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-122]
gi|377698743|gb|EHT23090.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377700845|gb|EHT25178.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377718662|gb|EHT42833.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377725876|gb|EHT49988.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377728772|gb|EHT52868.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377729531|gb|EHT53623.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1213]
gi|377758844|gb|EHT82725.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377768571|gb|EHT92349.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC348]
gi|379991529|gb|EIA13000.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
DR10]
gi|383360868|gb|EID38254.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus IS-M]
gi|384231218|gb|AFH70465.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
71193]
gi|387715907|gb|EIK03973.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS2]
gi|387716399|gb|EIK04457.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387716946|gb|EIK04983.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS1]
gi|387723609|gb|EIK11342.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS4]
gi|387725005|gb|EIK12635.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS5]
gi|387728097|gb|EIK15596.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS6]
gi|387733046|gb|EIK20243.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS8]
gi|387734039|gb|EIK21195.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VRS7]
gi|387734366|gb|EIK21519.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS9]
gi|387741937|gb|EIK28761.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS10]
gi|387742512|gb|EIK29325.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS11a]
gi|387743719|gb|EIK30504.1| truA- tRNA pseudouridine synthase A [Staphylococcus aureus subsp.
aureus VRS11b]
gi|402347041|gb|EJU82108.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CM05]
gi|404441002|gb|AFR74195.1| putative tRNA pseudouridine synthase [Staphylococcus aureus
08BA02176]
gi|408424148|emb|CCJ11559.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408426137|emb|CCJ13524.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408428125|emb|CCJ15488.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408430114|emb|CCJ27279.1| Pseudouridine synthase [Staphylococcus aureus subsp. aureus ST228]
gi|408432101|emb|CCJ19416.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408434095|emb|CCJ21380.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408436088|emb|CCJ23348.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST228]
gi|408438071|emb|CCJ25314.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ST228]
gi|443408682|gb|ELS67199.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus 21236]
gi|445561653|gb|ELY17845.1| tRNA pseudouridine synthase A [Staphylococcus aureus KT/Y21]
Length = 267
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
I + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEISDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|170720741|ref|YP_001748429.1| tRNA pseudouridine synthase A [Pseudomonas putida W619]
gi|169758744|gb|ACA72060.1| tRNA pseudouridine synthase A [Pseudomonas putida W619]
Length = 284
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 99/243 (40%), Gaps = 56/243 (23%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ + +AL K VA++ + GRTD GV
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVPSVQQALEQALSK----VANEPITVVC-AGRTDAGVHG 73
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQ++ R+N DE + N LP DI V+ P P
Sbjct: 74 CGQIVHFDTRAN--------------------RDERAWTLGTNFNLPHDISVVWSRPMPA 113
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
DF ARF +R Y+Y + + L++ M A + +G HDF F
Sbjct: 114 DFHARFKATARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVERMADAAQFLLGTHDFSAFR 173
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H + VT Q+ + +R +AFL H VR + VL I
Sbjct: 174 ASQCQAKSPIKHIHHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMTI 222
Query: 314 GQG 316
G G
Sbjct: 223 GAG 225
>gi|170727324|ref|YP_001761350.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908]
gi|238688683|sp|B1KKN8.1|TRUA_SHEWM RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|169812671|gb|ACA87255.1| tRNA pseudouridine synthase A [Shewanella woodyi ATCC 51908]
Length = 261
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 116/254 (45%), Gaps = 57/254 (22%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VAL + Y G +++G+ ++ +V++++ +AL K VA++ S + GRTD GV +
Sbjct: 3 VALGIEYDGSKYFGWQRQVEVD-SVQAQLERALSK----VANEPISVHC-AGRTDTGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ + I E + +N LP DI V
Sbjct: 57 TGQVVHF--------------------DTDAIRKESAWTLGVNVSLPDDIAVRWAKVVDE 96
Query: 214 DFSARFSCISREYKYFF----------------WRENLNLSAMESAGKKFVGEHDFRNF- 256
DF ARFS +R Y+Y +R +L+ + M A + FVGEHDF +F
Sbjct: 97 DFHARFSATARRYRYMIYNYQLRPGILRSGVSHYRTHLDENKMHEAAQHFVGEHDFTSFR 156
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + N + ++ +VT +G +C + I+ +AFL H VR +V L I
Sbjct: 157 ALHCQSKSPNRNVHEVNVTR----------QGMYIC-VDIKANAFLHHMVRNIVGSLIEI 205
Query: 314 GQGLESIDVIESLL 327
G G +S + I LL
Sbjct: 206 GLGHQSHEWIPELL 219
>gi|379707120|ref|YP_005262325.1| tRNA pseudouridine synthase A [Nocardia cyriacigeorgica GUH-2]
gi|374844619|emb|CCF61681.1| tRNA pseudouridine synthase A [Nocardia cyriacigeorgica GUH-2]
Length = 285
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 114/277 (41%), Gaps = 57/277 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A + TV+ + ++L K ++ + GRTD GV + G
Sbjct: 19 LDISYDGTDFIGWARQPGLR-TVQGVLEESLGKVL-----RETVQLTVAGRTDAGVHAEG 72
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + I+ V + R LPKD+R+ AP DF
Sbjct: 73 QVAHLDTAAQIEPAK--------------------LVHRMARFLPKDVRLKDIRIAPADF 112
Query: 216 SARFSCISREYKYFFW-----------------RENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS I R Y Y R L++ AM +A + +G HDF FC+
Sbjct: 113 DARFSAIRRHYAYRLTMAPYGAEPLQARGVVPCRPELDVHAMRAASRNLLGLHDFAAFCR 172
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A V +R F+ ++ EG+ L A + AF W VR +V + +G+G
Sbjct: 173 RREGATTVRELQR----FD----WVR-EGDLLTAY-VSADAFCWSMVRSLVGAVLAVGEG 222
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ + +LLD R +AP L L + D+
Sbjct: 223 RRTPEWTAALLDERS--RSSAVTVAPAHGLSLIAVDY 257
>gi|440696638|ref|ZP_20879093.1| tRNA pseudouridine synthase A [Streptomyces turgidiscabies Car8]
gi|440281146|gb|ELP68807.1| tRNA pseudouridine synthase A [Streptomyces turgidiscabies Car8]
Length = 281
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 115/273 (42%), Gaps = 58/273 (21%)
Query: 82 MSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY 141
MS + F R V L + Y G F G+A TV+ EI AL V E+ Y
Sbjct: 1 MSDDVEPGFVR-VRLDLSYDGTGFSGWARQPGGRRTVQGEIEDALRT----VTRSGEATY 55
Query: 142 --SRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRV- 198
+ GRTD GV + GQV + + V +E E ++L R+
Sbjct: 56 DLTVAGRTDTGVHARGQVAHV--------------DLPVAVWDEHRE------KLLKRLA 95
Query: 199 --LPKDIRVIGWSPAPTDFSARFSCISREYKY----------------FFWRE-NLNLSA 239
LPKD+RV + AP F+ARF+ + R Y Y W + L++
Sbjct: 96 GRLPKDVRVWRAAEAPGGFNARFAALWRRYVYRVGDRPGGVDPLLRSHVLWHDWELDVDV 155
Query: 240 MESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSF--EISPCYISFEGNQLCAIKIRGSA 297
M++A K VGEHDF + K KR S EI + + + I++R A
Sbjct: 156 MDAAAKSLVGEHDFAAYAK---------KREGASTVREIFDFGVRRRLDGVVEIEVRADA 206
Query: 298 FLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330
F +QVR MV L +G G +++ +LD
Sbjct: 207 FCHNQVRSMVGALLFVGDGHRTVEWPRRVLDAR 239
>gi|329938203|ref|ZP_08287654.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045]
gi|329302692|gb|EGG46582.1| tRNA pseudouridine synthase A [Streptomyces griseoaurantiacus M045]
Length = 288
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/263 (26%), Positives = 105/263 (39%), Gaps = 45/263 (17%)
Query: 82 MSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY 141
MS + F R V L + Y G F G+A TV+ EI AL R + ++
Sbjct: 1 MSDEVRPGFVR-VRLDLSYDGTGFSGWAKQAGGRRTVQGEIEDAL---RTVTRSRETFEL 56
Query: 142 SRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPK 201
+ GRTD GV + GQV + L +E E ++ L LP+
Sbjct: 57 TVAGRTDAGVHARGQVAHVDL-----------------PREVWAEHHGKLLKRLAGRLPR 99
Query: 202 DIRVIGWSPAPTDFSARFSCISREYKY----------------FFWRE-NLNLSAMESAG 244
D+RV AP F ARFS + R Y Y W + L++ AM A
Sbjct: 100 DVRVWALREAPAGFDARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAA 159
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
+ +GEHDF +CK + T + ++ G+ + +R AF + VR
Sbjct: 160 RGLLGEHDFAAYCK-------KREGATTIRTLQELSLARGGDGIVTATVRADAFCHNMVR 212
Query: 305 CMVAVLFMIGQGLESIDVIESLL 327
++ L +G G + D +L
Sbjct: 213 SLIGALLFVGDGHRAPDWPAKVL 235
>gi|379796541|ref|YP_005326542.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356873534|emb|CCE59873.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 267
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 119/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI V++ Q +NR LP DI V
Sbjct: 57 IQQYFHFDTDLNI------------PVEQWQY--------AMNRTLPDDIYVKNVDTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A +F+G HDF FC
Sbjct: 97 DFHCRYDCVGKHYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAHQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
I + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEISDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|104780847|ref|YP_607345.1| tRNA pseudouridine synthase A [Pseudomonas entomophila L48]
gi|95109834|emb|CAK14539.1| tRNA-pseudouridine synthase I [Pseudomonas entomophila L48]
Length = 284
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 105/255 (41%), Gaps = 56/255 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ +ALE+ VA++ + GRTD GV
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVPSVQ----QALEQALSTVANEPITVVC-AGRTDAGVHG 73
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQ++ R+ + DE + N LP DI V+ +P P
Sbjct: 74 CGQIVHFDTRA--------------------VRDERAWTLGTNFNLPHDISVVWSAPMPA 113
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
F ARF +R Y+Y + + L+++ M A + +G HDF F
Sbjct: 114 HFHARFKATARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVTRMAEAARYLLGTHDFSAFR 173
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H + VT Q+ + +R +AFL H VR + VL I
Sbjct: 174 ASQCQAKSPIKHIHHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMTI 222
Query: 314 GQGLESIDVIESLLD 328
G G ++ +L+
Sbjct: 223 GAGERPVEWAREVLE 237
>gi|374709786|ref|ZP_09714220.1| tRNA pseudouridine synthase A [Sporolactobacillus inulinus CASD]
Length = 245
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 108/250 (43%), Gaps = 48/250 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ G+ T++ +I E+T L V + C RTD GV ++G
Sbjct: 6 LTIQYDGSRYKGWQRLGDTRNTIQGKI----EQT-LTVIIGQSIEIVGCSRTDAGVHALG 60
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV +N K E + DE D++ LN LP+DI V F
Sbjct: 61 QV------ANFKT--------------ETLLDEADFLNQLNHQLPRDICVPAMEHVSDRF 100
Query: 216 SARFSCISREYKYFFW----------------RENLNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E L+++ M AGK F+G HDF +
Sbjct: 101 HARYNAKAKTYLYKIWNEPISNPFMRKFSMHVEEKLDVARMRQAGKHFLGTHDFTAY--- 157
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
AN + K+ + IS + + I++ G FL++ R MV L +G G
Sbjct: 158 --ANAKSKKKSMVR-TISAIKMDAH-DGFIDIRLTGDGFLYNMARKMVGTLIEVGLGAIE 213
Query: 320 IDVIESLLDT 329
+D I +L++
Sbjct: 214 VDAIPHILES 223
>gi|416840583|ref|ZP_11903830.1| tRNA pseudouridine synthase A [Staphylococcus aureus O11]
gi|416846707|ref|ZP_11906696.1| tRNA pseudouridine synthase A [Staphylococcus aureus O46]
gi|323440101|gb|EGA97816.1| tRNA pseudouridine synthase A [Staphylococcus aureus O11]
gi|323442775|gb|EGB00401.1| tRNA pseudouridine synthase A [Staphylococcus aureus O46]
Length = 267
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 118/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M+ A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMKRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEILKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HDVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELIK--DFGNDIKIHRKKSLQ 265
>gi|315283801|ref|ZP_07871873.1| tRNA pseudouridine synthase A [Listeria marthii FSL S4-120]
gi|313612551|gb|EFR86621.1| tRNA pseudouridine synthase A [Listeria marthii FSL S4-120]
Length = 248
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 122/280 (43%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL+K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALKK----MHKGKSVRITASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI +
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQVMTPFDISFLRVEEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
DF ARF + +EY+Y R LNL+ M+ A ++ +GEHDF +
Sbjct: 97 ADDFHARFGTVGKEYRYVVKRTKVFDPFSRNFALHYPYELNLAKMKLASERLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E ++ I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 G-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G + ++ E+LL + +K AP L L D++
Sbjct: 211 GRISPEEITEALLARD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|402813896|ref|ZP_10863490.1| tRNA pseudouridine synthase A [Paenibacillus alvei DSM 29]
gi|402507743|gb|EJW18264.1| tRNA pseudouridine synthase A [Paenibacillus alvei DSM 29]
Length = 266
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 118/285 (41%), Gaps = 53/285 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + + V Y G + GF N E TV+ I +A+ ++L + H S GRTD GV
Sbjct: 2 RNIGMLVSYDGTAYSGFQIQPN-EDTVQGRIEQAI---KMLTNESISIHAS--GRTDAGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID-YVRVLNRVLPKDIRVIGWSP 210
+ GQV S I ID + +N LP DI +
Sbjct: 56 HAYGQVFNFMTESAIP---------------------IDRWTIAINSRLPDDIVIRETWE 94
Query: 211 APTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFR 254
AP F +R+S + Y+Y FF+ + LN+ AM+ A +GEHDF
Sbjct: 95 APLSFHSRYSSKRKTYRYSIIAERKPDVFRRLTEFFYPKPLNVRAMQEAITHIIGEHDFT 154
Query: 255 NFCKMDAANVHN----YKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
+F + V N Y H+ E P EG I + G+ FL++ VR + +
Sbjct: 155 SFTSPKSTKVSNVRTIYDAHI---EYEPSETGEEGRGRIHIVVTGNGFLYNMVRIIAGTM 211
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355
+GQG + I +L+ R+ +A L+L S ++ G
Sbjct: 212 IRVGQGKLAPHDIPRILEAKN--RQVAGPLAVPQGLMLWSVEYGG 254
>gi|399923650|ref|ZP_10781008.1| tRNA pseudouridine synthase A [Peptoniphilus rhinitidis 1-13]
Length = 243
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 114/276 (41%), Gaps = 51/276 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +K+ Y G +F+GF + E TVE E+ KAL+KT K+E GRTDKGV +
Sbjct: 3 ILIKITYDGTKFHGFQIQPD-ERTVEGELNKALKKTL-----KEEVKVFYAGRTDKGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQ Y + I N +V+N LP+D+ V+
Sbjct: 57 LGQYANFYSDTTIDIGNLP--------------------KVINFNLPEDVSVVDAKYVTD 96
Query: 214 DFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFC 257
DF AR+ S++Y+Y +R ++ M+ A +GEHDF +F
Sbjct: 97 DFHARYDAKSKKYRYVIYRSRYRNSLLYNRAYEYPYEVDPKRMQEALNYLIGEHDFNSFM 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
A V + R + S ++ E + I G +FL + +R + IG+G
Sbjct: 157 GKGAI-VKDSIRTINSIDV------IEDGKFLYIDFVGKSFLKNMIRIVAGTTLEIGRGQ 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
I+ + L+ RK AP L L +
Sbjct: 210 REIEYMRKALEEKN--RKAAGPTAPACGLYLVDVKY 243
>gi|422417078|ref|ZP_16494035.1| tRNA pseudouridine synthase A [Listeria innocua FSL J1-023]
gi|313622273|gb|EFR92777.1| tRNA pseudouridine synthase A [Listeria innocua FSL J1-023]
Length = 248
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 121/280 (43%), Gaps = 51/280 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G F+G+ N TV++EI KALEK + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFFGYQVQPNTR-TVQAEIEKALEK----MHKGKSVRITASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQVI ++ + T ++ Q + L + P DI + A
Sbjct: 57 HAKGQVIHF------------DSELDITAEKFQ--------KALQVMTPFDISFLTVEEA 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
DF ARF I +EY+Y R L++ M+ A ++ +GEHDF +
Sbjct: 97 QADFHARFGTIGKEYRYVIKRTKIFDPFSRNFALHYPYELDIEKMKQASERLIGEHDFTS 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A + T + I E + I +G+ FL++ VR + L GQ
Sbjct: 157 FC---SARTERDSKVRTLYSID---FYEEDAETLVIAFQGNGFLYNMVRILTGTLLDAGQ 210
Query: 316 G-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G + D+ ++LL + +K AP L L D++
Sbjct: 211 GRISPDDITKALLAHD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|257865435|ref|ZP_05645088.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257871770|ref|ZP_05651423.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10]
gi|257875038|ref|ZP_05654691.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20]
gi|325569125|ref|ZP_08145372.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC
12755]
gi|420262845|ref|ZP_14765486.1| tRNA pseudouridine synthase [Enterococcus sp. C1]
gi|257799369|gb|EEV28421.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC30]
gi|257805934|gb|EEV34756.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC10]
gi|257809204|gb|EEV38024.1| tRNA pseudouridine synthase [Enterococcus casseliflavus EC20]
gi|325157583|gb|EGC69741.1| tRNA pseudouridine synthase A [Enterococcus casseliflavus ATCC
12755]
gi|394770602|gb|EJF50406.1| tRNA pseudouridine synthase [Enterococcus sp. C1]
Length = 245
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 108/252 (42%), Gaps = 48/252 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G+R+ G+ G+ E T++ ++ + +LL ++ E GRTD G
Sbjct: 2 RNIKLTIEYDGKRYLGWQRLGDSEKTIQEKVEGVI---KLLTGEEIE--IVGSGRTDAGT 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV +N K T+ S+ E Q NR LP+DI V
Sbjct: 57 HARGQV------ANFK--TTHQMSLPEMQQ------------FFNRYLPQDIVVNKIEEV 96
Query: 212 PTDFSARFSCISREYKYFFWR----------------ENLNLSAMESAGKKFVGEHDFRN 255
P F AR+ ++Y Y+ W + L+L M+ A +K +G HDF
Sbjct: 97 PERFHARYHAKGKQYSYYVWNNAIPSVFARNTSFHCPQPLDLEKMQQAAEKLIGTHDFIG 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F + + + R + I+P EG+ L +G+ FL VR + L IG
Sbjct: 157 FSALKKSK-KSTVRTIDEITITP-----EGD-LLRFTFKGNGFLHKMVRILTGTLIAIGD 209
Query: 316 GLESIDVIESLL 327
G +VI+ +L
Sbjct: 210 GTLPPEVIDQVL 221
>gi|445063149|ref|ZP_21375399.1| tRNA pseudouridine synthase A [Brachyspira hampsonii 30599]
gi|444505451|gb|ELV05963.1| tRNA pseudouridine synthase A [Brachyspira hampsonii 30599]
Length = 249
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 123/279 (44%), Gaps = 51/279 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ + + Y G FYG+ N+ TV+ EI+KA++K V +K + Y CGRTD GV +
Sbjct: 4 IKITIQYDGTDFYGWQIQPNLR-TVQGEIYKAVQK----VYGEKITIYG-CGRTDAGVHA 57
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQV N M + + I LN L +D+R+I P
Sbjct: 58 LGQV-----------ANFRVPKMLVPINKVHI--------ALNSYLDRDLRIIKAEEMPD 98
Query: 214 DFSARFSCISREYKY----------------FFWREN-LNLSAMESAGKKFVGEHDFRNF 256
+F+AR S I REY Y +F+R+N ++ + K +GEH+F +F
Sbjct: 99 NFNARASAIFREYLYIVHNSSTSFPFYERYAWFYRKNIIDEKLINEYAKYLIGEHNFTSF 158
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
C + N ++ I +G+ + I IRG+AFL + VR +V L +
Sbjct: 159 CSTEDENDSKFRYLERVKAIR------KGDTIYFI-IRGNAFLHNMVRIIVGTLVEGQKK 211
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355
+ ++ IE +L R + AP L + F G
Sbjct: 212 KKPVNFIEDILKRED--RASAFVTAPAHGLYFRRAFFKG 248
>gi|117927545|ref|YP_872096.1| tRNA pseudouridine synthase A [Acidothermus cellulolyticus 11B]
gi|117648008|gb|ABK52110.1| tRNA pseudouridine synthase A [Acidothermus cellulolyticus 11B]
Length = 297
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 109/265 (41%), Gaps = 35/265 (13%)
Query: 100 YFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIA 159
Y G F GFA + TV++E+ +AL L + + GRTD GV + GQV+
Sbjct: 27 YDGTDFAGFARQPGLR-TVQAEVERALAVVLRL---PEPPPVTAAGRTDAGVHARGQVLH 82
Query: 160 IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARF 219
+ + + A G Q+ LN VLP DI V AP F ARF
Sbjct: 83 VDVPIDALRV-VGAAETGAADAVAQLAAR------LNGVLPDDIAVHAVGLAPPGFDARF 135
Query: 220 SCISREYKY---------------FFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANV 264
S ++R Y Y W L+ +AM +AG +GEHDF FC+ N
Sbjct: 136 SALARRYSYRVADRRWDPLRRRDTLRWPRPLDETAMNAAGAALLGEHDFAAFCRRR-ENA 194
Query: 265 HNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIE 324
+R + FE ++ +G+ + ++ AF VR +V + +G G +
Sbjct: 195 TTIRR-LLRFE----WLR-DGDGVLVAQVEADAFCHSMVRALVGAVLAVGAGRRPVGWPA 248
Query: 325 SLLDTNGIPRKPQYNMAPEIPLVLQ 349
+L R P + P L L+
Sbjct: 249 EVLAARA--RDPAVTVVPPHGLTLE 271
>gi|358065580|ref|ZP_09152117.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
gi|356696219|gb|EHI57841.1| tRNA pseudouridine synthase A [Clostridium hathewayi WAL-18680]
Length = 242
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 119/276 (43%), Gaps = 52/276 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
+ V Y G R+ G+ GN E T++S++ + K + + E S GRTD GV + G
Sbjct: 1 MVVQYDGTRYDGWQRQGNTENTIQSKLESVIGK---MTGEDVEIIGS--GRTDAGVHATG 55
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEI-DYVRVLNRVLPKDIRVIGWSPAPTD 214
QV +++ + E+ EI DYV N+ LP DI V AP
Sbjct: 56 QVANVHMDT------------------EKTPQEIKDYV---NQYLPDDIAVTQLEEAPDR 94
Query: 215 FSARFSCISREYKYF---------FWRE-------NLNLSAMESAGKKFVGEHDFRNFCK 258
F +R + + Y Y+ F R+ L++ AM A K G HDF++FC
Sbjct: 95 FHSRLNATGKVYTYWIETAPKCSVFQRKYIYTLGRKLDVEAMRQAAKLLCGTHDFKSFC- 153
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ N K+ T + I G+ L I + G FL++ VR +V L +G G
Sbjct: 154 ----SNKNMKKS-TVRTVKTISIQERGSGL-EIHVIGDGFLYNMVRILVGTLIEVGLGKR 207
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ D + +L+ R+ AP L L + +D
Sbjct: 208 TPDSMREILEAK--DRQAAGATAPACGLFLTAVMYD 241
>gi|296329175|ref|ZP_06871676.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
gi|296153531|gb|EFG94348.1| tRNA-pseudouridine synthase I [Fusobacterium nucleatum subsp.
nucleatum ATCC 23726]
Length = 247
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 100/240 (41%), Gaps = 46/240 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + ++ Y G +YGF N + TV+ EI K L + K+E + GRTD+G
Sbjct: 5 RKNIKIEFRYDGSSYYGFQRQPN-KITVQGEIEKVLR-----IVTKEEINLISAGRTDRG 58
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y SNI IE Y +L R LP DI ++
Sbjct: 59 VHANHQVSNFYTSSNI-----------------PIEK---YKYLLTRALPNDIDILSVEE 98
Query: 211 APTDFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNF 256
+F+AR + REY Y F +E + +E F+G HDF+NF
Sbjct: 99 VDENFNARHNAKMREYIYIISWEKNPFEARYCKFVKEKIVAEKLEKIFSDFIGVHDFKNF 158
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + VT EI + + G I I+GSAFL QVR MV I G
Sbjct: 159 RLSDCVS------KVTVREIYQIEVKYFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYG 212
>gi|418560145|ref|ZP_13124667.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21252]
gi|371972856|gb|EHO90225.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21252]
Length = 267
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPEMLDLDKMNKAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
I + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEISDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|237743728|ref|ZP_04574209.1| tRNA pseudouridine synthase A [Fusobacterium sp. 7_1]
gi|229432759|gb|EEO42971.1| tRNA pseudouridine synthase A [Fusobacterium sp. 7_1]
Length = 245
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/277 (28%), Positives = 116/277 (41%), Gaps = 48/277 (17%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + ++ Y G +YGF N + TV+ EI K L + K+E + GRTD+G
Sbjct: 3 RKNIKIEFRYDGSGYYGFQRQPN-KITVQGEIEKILR-----IVTKEEINLISAGRTDRG 56
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y S I IE Y +L R LP DI ++
Sbjct: 57 VHANHQVSNFYTSSTI-----------------PIEK---YKYLLTRALPNDIDILSVEE 96
Query: 211 APTDFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNF 256
+F+AR + REY Y F +E +++ +E FVG HDF+NF
Sbjct: 97 VDENFNARHNAKMREYVYIISWEKNPFEARYCKFVKEKIDVRKLEKIFSDFVGVHDFKNF 156
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + VT EI + + G I I+GSAFL QVR MV + I G
Sbjct: 157 RLNDCVS------KVTIREIYQIEVKYFGESKIKIYIKGSAFLKSQVRIMVGIALEIYYG 210
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ I +L N R+ + N+ L L ++
Sbjct: 211 RLPENHIRLML--NDFTREYKKNLVEAEGLYLNKINY 245
>gi|407642131|ref|YP_006805890.1| tRNA pseudouridine synthase A [Nocardia brasiliensis ATCC 700358]
gi|407305015|gb|AFT98915.1| tRNA pseudouridine synthase A [Nocardia brasiliensis ATCC 700358]
Length = 287
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 112/279 (40%), Gaps = 57/279 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G F G+A + TV+ + ++L K ++ + GRTD GV +
Sbjct: 19 VRLDIGYDGTDFTGWARQPGLR-TVQGVLEESLTKVF-----REPVQLTVAGRTDAGVHA 72
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + D V + R LPKD+R+ AP
Sbjct: 73 EGQVAHFDTAAEV--------------------DPAKLVHRMARFLPKDVRIKDVQLAPA 112
Query: 214 DFSARFSCISREYKYFFW-----------------RENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS I R Y Y R +++L AM +A +K +G H+F F
Sbjct: 113 EFDARFSAIRRHYAYRLTTARYGAEPLQARSVVACRHDVDLDAMRAASRKLLGLHNFAAF 172
Query: 257 CKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
C+ A V +R F+ + + +L + AF W VR +V + +G
Sbjct: 173 CRRREGATTVRELQR----FDWA------QQGELLTAYVSADAFCWSMVRSLVGAVLAVG 222
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G + D + LL R +AP L L + D+
Sbjct: 223 EGRRTPDWVAGLLQET--ERSSSVTVAPAHGLSLIAVDY 259
>gi|387781182|ref|YP_005755980.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus LGA251]
gi|344178284|emb|CCC88770.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus LGA251]
Length = 267
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKHYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELIK--DFGNDIKIHRKKSLQ 265
>gi|297618350|ref|YP_003703509.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
gi|297146187|gb|ADI02944.1| tRNA pseudouridine synthase A [Syntrophothermus lipocalidus DSM
12680]
Length = 244
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 107/254 (42%), Gaps = 65/254 (25%)
Query: 98 VMYFGQRFYGFASDGNMEP---TVESEIFKAL-----EKTRLLVADKKESHYSRCGRTDK 149
V Y G R+ GF +P T+E E+ A+ E+ ++L A GRTD
Sbjct: 8 VEYEGTRYSGF----QRQPRGLTIEGELEAAICKLTGERVKVLAA----------GRTDA 53
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV ++GQVIA S I + LN VLP DIRV+
Sbjct: 54 GVHALGQVIAFDTESPIPPER--------------------FAPALNSVLPSDIRVLKSE 93
Query: 210 PAPTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDF 253
A F R+ ++ Y+Y +R+ L+L AM A + G HDF
Sbjct: 94 KAKEGFHPRYQARAKAYRYLIYRQEEGRTFYRNLAYYYPQPLDLPAMAKAARYMEGTHDF 153
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
FC + V NY R T FE+S I+ E I + G FL++ VR MV L +
Sbjct: 154 MAFCA-SGSGVRNYVR--TVFEVS---IN-EKPPFLQIDVCGDGFLYNMVRIMVGTLLEV 206
Query: 314 GQGLESIDVIESLL 327
G+ + + +E +L
Sbjct: 207 GRKRLAPEEVEQIL 220
>gi|386831791|ref|YP_006238445.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417800453|ref|ZP_12447572.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21310]
gi|418657441|ref|ZP_13219208.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-105]
gi|334270999|gb|EGL89394.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21310]
gi|375030605|gb|EHS23915.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-105]
gi|385197183|emb|CCG16829.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus HO 5096 0412]
Length = 267
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|296213295|ref|XP_002753209.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Callithrix
jacchus]
Length = 428
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 89/356 (25%), Positives = 151/356 (42%), Gaps = 72/356 (20%)
Query: 28 ADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEEN----RKTESGGCKTGKKKVKEKMS 83
A NA+L S R + + + G G + E+ +K +SGG E+
Sbjct: 30 AGNAELPSPAGSARPQ--DRRSRSGRAGGVRVWEDGEHPAKKLKSGG--------DEERR 79
Query: 84 GTLNHHFKRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKK 137
G L KR V L + Y G+ ++G + G+ + T+E ++ AL ++ + D +
Sbjct: 80 GKLP---KRKVVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 136
Query: 138 ESHYSRCGRTDKGVSSVGQVIA--IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVL 195
+ + RC RTDKGVS+ GQV++ ++L I E +
Sbjct: 137 KMSFQRCARTDKGVSAAGQVVSLKVWLIDGILE-------------------------KI 171
Query: 196 NRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF------------WRENLNLSA--ME 241
NR LP IR++G F+++ C +R Y Y E LSA ++
Sbjct: 172 NRHLPSHIRILGLKRVTGGFNSKNKCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQ 231
Query: 242 SAGKKFV---GEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAF 298
+ G H+F NF + +R++ ++ EG + I+++G +F
Sbjct: 232 QVNRLLACYEGTHNFHNFTSQKGPQEPSARRYILEMYCEEPFVR-EGLEFAVIRVKGQSF 290
Query: 299 LWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ HQ+R MV ++ I +G ESLL+ + K AP + LVL+ F+
Sbjct: 291 MMHQIRKMVGLVVAIVKGYAP----ESLLERSWGTEKVDVPKAPGLGLVLERVHFE 342
>gi|312793879|ref|YP_004026802.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181019|gb|ADQ41189.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 244
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 120/254 (47%), Gaps = 53/254 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G ++G+ N + T++ I +A++K +E + GRTD+GV
Sbjct: 2 RNILLTIEYDGTGYFGWQKQPNKK-TIQGTIEEAIKKLT-----GEEVNLIGSGRTDRGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++ Q ++N K TN+ +I + + LN VLP DI +
Sbjct: 56 HALNQ------KANFK---TNS----------KIPTD-KFPLALNSVLPGDISIKDAVEV 95
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
P DFSAR+S + YKY + + L++ AM+ A + F+GE+DF++
Sbjct: 96 PLDFSARYSAKQKTYKYLIYNKKSRPALLRNYAYHYPYELDVDAMQRACEYFIGEYDFKS 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC D+ +R + Y++FE N+ AI I + FL++ R + + +G
Sbjct: 156 FCSADSEAKTTIRR------VYNAYLTFE-NECIAIYITANGFLYNMARIIAGTILDVGA 208
Query: 316 G-LESID---VIES 325
G L+ +D VIES
Sbjct: 209 GKLKPMDIPLVIES 222
>gi|374307823|ref|YP_005054254.1| tRNA pseudouridine synthase A [Filifactor alocis ATCC 35896]
gi|291166165|gb|EFE28211.1| tRNA pseudouridine synthase A [Filifactor alocis ATCC 35896]
Length = 244
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 124/279 (44%), Gaps = 57/279 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ LK+ Y G + G+ N + +++ EI +A+ + K+ + + GRTD GV +
Sbjct: 5 ILLKIQYIGTNYCGWQKQNNGK-SIQQEIERAICE-----VTGKQVNLTGSGRTDSGVHA 58
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+GQV N + T+ E+I+ I+Y LP DIR+I
Sbjct: 59 LGQVA--------------NFVIDTTIPVEKIKYAINYY------LPDDIRIIESKAVED 98
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
F AR+S + Y Y +F + L+LS M+ K +GEHDF F
Sbjct: 99 SFHARYSSKKKTYCYRINMNEIESPFEKNRSYFVGKELDLSKMKEQSKFLMGEHDFAAF- 157
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+ + ++V R + S EI+ C N + I I G+ FL++ VR + L IG+G
Sbjct: 158 QSEGSSVKTTVRTIYSLEIN-CI-----NNIAEIHIIGNGFLYNMVRIIAGTLIEIGKGK 211
Query: 318 ES--IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ +D++ + N P AP L ++ ++D
Sbjct: 212 DYSIVDILNTKQRENAGP------TAPACGLFMEKVEYD 244
>gi|19704921|ref|NP_602416.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|42559836|sp|Q8R601.1|TRUA_FUSNN RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|19712818|gb|AAL93715.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 247
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 100/240 (41%), Gaps = 46/240 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + ++ Y G +YGF N + TV+ EI K L + K+E + GRTD+G
Sbjct: 5 RKNIKIEFRYDGSSYYGFQRQPN-KITVQGEIEKVLR-----IVTKEEINLISAGRTDRG 58
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y SNI IE Y +L R LP DI ++
Sbjct: 59 VHANHQVSNFYTSSNI-----------------PIEK---YKYLLTRALPNDIDILSVEE 98
Query: 211 APTDFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNF 256
+F+AR + REY Y F +E + +E F+G HDF+NF
Sbjct: 99 VDENFNARHNAKMREYIYIISWEKNPFEARYCKFVKEKIVAEKLEKIFSDFIGVHDFKNF 158
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + VT EI + + G I I+GSAFL QVR MV I G
Sbjct: 159 RLSDCVS------KVTVREIYQIEVKYFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYG 212
>gi|423556593|ref|ZP_17532896.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MC67]
gi|401194867|gb|EJR01835.1| tRNA pseudouridine synthase A 2 [Bacillus cereus MC67]
Length = 245
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 52/275 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ GN + T++ +I + + +V KE+ C RTD GV ++
Sbjct: 6 LTIQYDGARYKGWQRLGNNDNTIQGKIESIISE---MVG--KETEIIGCSRTDAGVHALN 60
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N E + E +++ + LN+ LP DI + P F
Sbjct: 61 QVA--------------NFQSDEKLVEHKVK------KYLNQYLPNDISITSVEEVPDRF 100
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E LN+ +M+ A K VG HDF F
Sbjct: 101 HARYNSKAKTYLYKIWNEEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNA 160
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + R V + ++ FE + I++ G+ FL + VR +V L +G G
Sbjct: 161 KSKK-KSMVREVYTLDV------FEESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLE 213
Query: 320 IDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
D I ++L+ ++ Q N +A L L++ F
Sbjct: 214 ADAIPNILEE---KQRNQINCLAEASGLYLENVKF 245
>gi|57650803|ref|YP_187018.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
COL]
gi|87160970|ref|YP_494808.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88196131|ref|YP_500948.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|151222333|ref|YP_001333155.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161510423|ref|YP_001576082.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221140179|ref|ZP_03564672.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|258450785|ref|ZP_05698844.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5948]
gi|262048488|ref|ZP_06021372.1| tRNA pseudouridine synthase A [Staphylococcus aureus D30]
gi|262052013|ref|ZP_06024224.1| tRNA pseudouridine synthase A [Staphylococcus aureus 930918-3]
gi|282922088|ref|ZP_06329784.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9765]
gi|284025245|ref|ZP_06379643.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
132]
gi|294848752|ref|ZP_06789497.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9754]
gi|304379403|ref|ZP_07362138.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|379015343|ref|YP_005291579.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VC40]
gi|384862863|ref|YP_005745583.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384870767|ref|YP_005753481.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
T0131]
gi|387143924|ref|YP_005732318.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus TW20]
gi|415686936|ref|ZP_11450940.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CGS01]
gi|417647878|ref|ZP_12297709.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21189]
gi|418279703|ref|ZP_12892914.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21178]
gi|418287081|ref|ZP_12899713.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21209]
gi|418314248|ref|ZP_12925726.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21334]
gi|418319156|ref|ZP_12930542.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21232]
gi|418572045|ref|ZP_13136260.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21283]
gi|418577420|ref|ZP_13141518.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418642175|ref|ZP_13204370.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-24]
gi|418648088|ref|ZP_13210138.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-88]
gi|418650870|ref|ZP_13212887.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-91]
gi|418660082|ref|ZP_13221726.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-111]
gi|418872398|ref|ZP_13426738.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-125]
gi|418901786|ref|ZP_13455830.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418904582|ref|ZP_13458611.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418910049|ref|ZP_13464037.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG547]
gi|418923945|ref|ZP_13477851.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418926786|ref|ZP_13480676.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1612]
gi|418946767|ref|ZP_13499176.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-157]
gi|418955166|ref|ZP_13507114.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-189]
gi|419774897|ref|ZP_14300850.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus CO-23]
gi|422743293|ref|ZP_16797285.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422746545|ref|ZP_16800477.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MRSA131]
gi|424786202|ref|ZP_18212993.1| tRNA pseudouridine synthase A [Staphylococcus aureus CN79]
gi|440706723|ref|ZP_20887447.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus 21282]
gi|440735577|ref|ZP_20915180.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|62901165|sp|Q5HDY9.1|TRUA_STAAC RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|123098008|sp|Q2FW37.1|TRUA_STAA8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|123763262|sp|Q2FES0.1|TRUA_STAA3 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|172049003|sp|A6QJ61.1|TRUA_STAAE RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|189030147|sp|A8Z326.1|TRUA_STAAT RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|57284989|gb|AAW37083.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
COL]
gi|87126944|gb|ABD21458.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203689|gb|ABD31499.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|150375133|dbj|BAF68393.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160369232|gb|ABX30203.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257861568|gb|EEV84370.1| tRNA pseudouridine synthase A [Staphylococcus aureus A5948]
gi|259160068|gb|EEW45101.1| tRNA pseudouridine synthase A [Staphylococcus aureus 930918-3]
gi|259163346|gb|EEW47904.1| tRNA pseudouridine synthase A [Staphylococcus aureus D30]
gi|269941808|emb|CBI50218.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus TW20]
gi|282593556|gb|EFB98549.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9765]
gi|294824131|gb|EFG40555.1| tRNA pseudouridine synthase A [Staphylococcus aureus A9754]
gi|302752092|gb|ADL66269.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304341935|gb|EFM07839.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|315198251|gb|EFU28582.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CGS01]
gi|320140243|gb|EFW32102.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320143513|gb|EFW35294.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MRSA177]
gi|329314902|gb|AEB89315.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
T0131]
gi|329732055|gb|EGG68410.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21189]
gi|365164505|gb|EHM56419.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21209]
gi|365170356|gb|EHM61381.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21178]
gi|365233874|gb|EHM74816.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21334]
gi|365241409|gb|EHM82155.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21232]
gi|371977744|gb|EHO95004.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21283]
gi|374364040|gb|AEZ38145.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VC40]
gi|375017223|gb|EHS10844.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-24]
gi|375027353|gb|EHS20717.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-88]
gi|375027526|gb|EHS20889.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-91]
gi|375033185|gb|EHS26390.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-111]
gi|375367240|gb|EHS71207.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-125]
gi|375371619|gb|EHS75389.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-189]
gi|375377417|gb|EHS80885.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-157]
gi|377699302|gb|EHT23648.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377727863|gb|EHT51965.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG547]
gi|377740496|gb|EHT64492.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377745139|gb|EHT69115.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377748212|gb|EHT72173.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377766122|gb|EHT89955.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|383971296|gb|EID87375.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus CO-23]
gi|421955471|gb|EKU07809.1| tRNA pseudouridine synthase A [Staphylococcus aureus CN79]
gi|436430457|gb|ELP27819.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
DSM 20231]
gi|436506874|gb|ELP42633.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus 21282]
Length = 267
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLGKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|168213913|ref|ZP_02639538.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
gi|170714597|gb|EDT26779.1| tRNA pseudouridine synthase A [Clostridium perfringens CPE str.
F4969]
Length = 248
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 107/244 (43%), Gaps = 51/244 (20%)
Query: 92 RYVALKVMYFGQRFYGFASD---GNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
R + + + Y G ++ G+ G+ TV+ ++ K L K +E CGRTD
Sbjct: 2 RNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTK-----MTSEEIQLIGCGRTD 56
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
GV + V +N K N+ M +E I+Y+ N LP+DIRV
Sbjct: 57 SGVHAKNYV------ANFK----TNSLM-------TLEQIIEYI---NEYLPEDIRVTEI 96
Query: 209 SPAPTDFSARFSCISREYKY--------------FFW--RENLNLSAMESAGKKFVGEHD 252
A F ARF+ S+ Y+Y + W E L+L AME K +G HD
Sbjct: 97 REASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHD 156
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
F++F + + N R + S E E N + +IKI G+ FL + VR +V L
Sbjct: 157 FKSFTSLKSKNKSTL-RTINSIEFH------ENNNILSIKINGNGFLLNMVRIIVGTLVN 209
Query: 313 IGQG 316
+G G
Sbjct: 210 VGLG 213
>gi|294784150|ref|ZP_06749451.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_27]
gi|294488220|gb|EFG35565.1| tRNA pseudouridine synthase A [Fusobacterium sp. 3_1_27]
Length = 245
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 99/237 (41%), Gaps = 46/237 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ ++ Y G R+YGF + + TV+ EI K L + K+E + GRTD+GV +
Sbjct: 6 IKIEFRYDGSRYYGFQRQPD-KITVQGEIEKILR-----IVTKEEINLISAGRTDRGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV Y SNI IE Y +L R LP DI ++
Sbjct: 60 YHQVSNFYTSSNI-----------------PIE---KYKYLLTRALPNDIDILSVEEVDE 99
Query: 214 DFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
+F+AR + REY Y F +E + +E FVG HDF+NF
Sbjct: 100 NFNARHNAKIREYIYIISWEKNPFEARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNFRLN 159
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + +T EI + + G I I+GSAFL QVR MV I G
Sbjct: 160 DCVS------KITIREIYQIEVKYFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYG 210
>gi|253729885|ref|ZP_04864050.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253726332|gb|EES95061.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 267
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/300 (25%), Positives = 116/300 (38%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
I + LL+ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEISDVPKLLELKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|407708451|ref|YP_006832036.1| Enzyme [Bacillus thuringiensis MC28]
gi|407386136|gb|AFU16637.1| tRNA pseudouridine synthase A 2 [Bacillus thuringiensis MC28]
Length = 245
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 122/283 (43%), Gaps = 56/283 (19%)
Query: 88 HHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRT 147
H++K L + Y G R+ G+ GN + T++ +I + + +V KE C RT
Sbjct: 2 HNYK----LTIQYDGARYKGWQRLGNNDNTIQGKIESVISE---MVG--KEIEIIGCSRT 52
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D GV ++ QV +N K E+ +E ++ + LN+ LP DI +
Sbjct: 53 DAGVHALNQV------ANFKS------------DEKLVEHKVK--KYLNQYLPNDISITN 92
Query: 208 WSPAPTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEH 251
P F AR++ ++ Y Y W E LN+ +M+ A K VG H
Sbjct: 93 VEEVPDRFHARYNSKAKTYLYKIWNEEHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSH 152
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
DF F + + R V E+S E I++ G+ FL + VR +V L
Sbjct: 153 DFTAFSNAKSKK-KSMVREVYMLEVS------EEAGFVQIRVSGNGFLHNMVRKIVGALI 205
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
+G G D I ++L+ ++ Q N +A L L+S +F
Sbjct: 206 EVGLGQLDADAIPNILEE---KQRNQINCLAEASGLYLESVEF 245
>gi|319654901|ref|ZP_08008976.1| tRNA pseudouridine synthase A [Bacillus sp. 2_A_57_CT2]
gi|317393464|gb|EFV74227.1| tRNA pseudouridine synthase A [Bacillus sp. 2_A_57_CT2]
Length = 269
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 106/249 (42%), Gaps = 54/249 (21%)
Query: 98 VMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
+ Y G F G+ ++P TV+ E+ +AL+K + ++ + GRTD GV +
Sbjct: 8 ITYDGTHFAGY----QVQPGKRTVQGELERALKK----LHKGEDIKVTASGRTDAGVHAR 59
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQVI ++ + +++ +I LN +LP ++ ++G P D
Sbjct: 60 GQVIHF------------DSPLNIPIEKWEI--------ALNSLLPDEVAIVGAETVPDD 99
Query: 215 FSARFSCISREYKYFF----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
F RF +EY+YF + LN A++ A +G HDF +FC
Sbjct: 100 FHVRFDAKGKEYRYFVHCSSRRDPFKRHYAYQYSYPLNTDAIKQAAADLIGTHDFTSFCS 159
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
V + R + E+ E + + RG+ FL++ VR + L +G G
Sbjct: 160 A-KTEVEDKVRELQEIEVQ------EKEDMLIFRFRGTGFLYNMVRILAGTLLEVGSGER 212
Query: 319 SIDVIESLL 327
D + S+L
Sbjct: 213 DPDSMPSVL 221
>gi|325282723|ref|YP_004255264.1| tRNA pseudouridine synthase A [Deinococcus proteolyticus MRP]
gi|324314532|gb|ADY25647.1| tRNA pseudouridine synthase A [Deinococcus proteolyticus MRP]
Length = 294
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/289 (27%), Positives = 116/289 (40%), Gaps = 60/289 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L V + G + G+ S N P+V+ + AL + L A + GRTD GV +
Sbjct: 33 VLLTVAWDGSAYGGWQSQPN-APSVQDTLHAALNRLGLEAARPVAA-----GRTDAGVHA 86
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ + L + + E++ L R LP+ + V+ AP
Sbjct: 87 LNMPAHVDLHA-------------PRIPPERL------ALALARQLPRSVAVLSAQAAPA 127
Query: 214 DFSARFSCISREYKY---------------FFW-RENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFSC R Y Y W R L+LSAM +A + +G HDF F
Sbjct: 128 GFHARFSCTQRRYLYQILNAPARHPLEEGRSLWVRGQLDLSAMNAAAQHLIGLHDFAAFA 187
Query: 258 -KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
K D V +R + P Q + + G +FL H VR +V L +GQG
Sbjct: 188 TKEDRQTVRELQRLAVTASPLPY------GQRVTLAVVGESFLRHMVRGLVGTLIAVGQG 241
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAG 365
+ + + +L +G R+ N+AP DGL F + AG
Sbjct: 242 KLAPEAVAEIL-ASGDRRQAGINVAP-----------DGLYFAGAGYAG 278
>gi|300870453|ref|YP_003785324.1| tRNA-pseudouridine synthase TrmA [Brachyspira pilosicoli 95/1000]
gi|404475209|ref|YP_006706640.1| tRNA-pseudouridine synthase TrmA [Brachyspira pilosicoli B2904]
gi|431808714|ref|YP_007235612.1| tRNA-pseudouridine synthase TrmA [Brachyspira pilosicoli P43/6/78]
gi|300688152|gb|ADK30823.1| tRNA-pseudouridine synthase, TrmA [Brachyspira pilosicoli 95/1000]
gi|404436698|gb|AFR69892.1| tRNA-pseudouridine synthase TrmA [Brachyspira pilosicoli B2904]
gi|430782073|gb|AGA67357.1| tRNA-pseudouridine synthase TrmA [Brachyspira pilosicoli P43/6/78]
Length = 247
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 112/252 (44%), Gaps = 51/252 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ + + Y G F+G+ N+ TV+ EI+KA++K + KK + Y CGRTD GV +
Sbjct: 4 IKITIQYDGTDFFGWQIQPNLR-TVQGEIYKAVQK----IYSKKSTIYG-CGRTDAGVHA 57
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV-RVLNRVLPKDIRVIGWSPAP 212
+GQV + E++ I+ V R LN LPKDIR+I
Sbjct: 58 LGQV--------------------ANFRVEKMLVPIERVTRALNSALPKDIRIIKSEVVD 97
Query: 213 TDFSARFSCISREYKY----------------FFWREN-LNLSAMESAGKKFVGEHDFRN 255
F+AR S REY Y +F+R+N +N + K VGEH+F +
Sbjct: 98 DSFNARASATFREYIYVVQNSDISVPFYERYSWFYRKNIINEKLINEYAKYLVGEHNFTS 157
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC + N + R++ + IRG+AFL + VR +V L +
Sbjct: 158 FCSTEDENDSKF-RYIERVR------AIRKKDTIYFIIRGNAFLHNMVRIIVGTLVEGQR 210
Query: 316 GLESIDVIESLL 327
++ IE +L
Sbjct: 211 KNMPVNFIEEIL 222
>gi|403382898|ref|ZP_10924955.1| tRNA pseudouridine synthase A [Paenibacillus sp. JC66]
Length = 259
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 112/258 (43%), Gaps = 58/258 (22%)
Query: 82 MSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKE 138
M GT N R + L V Y G ++ GF ++P TV+ E+ +A+ +
Sbjct: 1 MPGTAN----RNIKLTVSYDGTQYSGF----QIQPQANTVQGELERAV-----FHLTGQS 47
Query: 139 SHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID-YVRVLNR 197
+ GRTD GV + QV+ + S+I ID + LN
Sbjct: 48 VKLTSSGRTDAGVHARCQVVNFEVNSSIP---------------------IDRWCLALNS 86
Query: 198 VLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRE----------------NLNLSAME 241
LPKDI V P +F AR S +S+ Y+Y R +L+LSAME
Sbjct: 87 RLPKDIVVHTAEEVPMEFHARRSAVSKTYRYSIQRSKWANVMYRDSRLHHPGSLSLSAME 146
Query: 242 SAGKKFVGEHDFRNFCKMDAANVHNYKRHVTS---FEISPCYISFEGNQLCAIKIRGSAF 298
A K+ G HDF FC AA V + + ++ FE P + + I I+G+ F
Sbjct: 147 KALKQLEGTHDFTTFCSRRAAVVSHVRTIYSTSIVFEAEPMLGDGDAG-VIHIYIQGNGF 205
Query: 299 LWHQVRCMVAVLFMIGQG 316
L++ VR +V L IG+G
Sbjct: 206 LYNMVRIIVGTLLQIGEG 223
>gi|34762680|ref|ZP_00143671.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887637|gb|EAA24715.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 245
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 101/240 (42%), Gaps = 46/240 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + ++ Y G R+YGF + + TV+ EI K L + K+E + GRTD+G
Sbjct: 3 RKNIKIEFRYDGSRYYGFQRQPD-KITVQGEIEKILR-----IVTKEEINLISAGRTDRG 56
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y SNI IE Y +L R LP DI ++
Sbjct: 57 VHANHQVSNFYTSSNI-----------------PIEK---YKYLLTRALPNDIDILSVEE 96
Query: 211 APTDFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNF 256
+F+AR + REY Y F +E + +E FVG HDF+NF
Sbjct: 97 VDENFNARHNAKMREYVYIISWEKNPFEARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNF 156
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + +T EI + + G I I+GSAFL QVR MV I G
Sbjct: 157 RLNDCVS------KITIREIYQIEVKYFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYG 210
>gi|448593516|ref|ZP_21652471.1| tRNA pseudouridine synthase A [Haloferax elongans ATCC BAA-1513]
gi|445729297|gb|ELZ80893.1| tRNA pseudouridine synthase A [Haloferax elongans ATCC BAA-1513]
Length = 270
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 108/278 (38%), Gaps = 50/278 (17%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
A +V Y G+ ++GF ++ PTVE + A + AD+ Y+ GRTD GVS++
Sbjct: 3 AFRVAYDGRPYHGFQRQPDV-PTVEDTLLDACRTLGICDADEVPVGYAASGRTDAGVSAL 61
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
Q +A EC E R LN LP IR + P D
Sbjct: 62 AQTVAF-------ECP-----------------EWCTPRALNAELPGTIRAWASADVPDD 97
Query: 215 FSARFSCISREYKYFFW--RENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVT 272
F AR REY Y E ++ + + GEHDF N + V V
Sbjct: 98 FHARHHPSRREYVYDLHAPSEAVDDDLAATVFDELCGEHDFHNLTPDEVGTVRTLDGEV- 156
Query: 273 SFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL---ESIDVI---ESL 326
+ +I F VR +V+++ I G E +D + E L
Sbjct: 157 ----------WRDGDFLLFRIEAGGFARELVRRVVSLVRAIATGAAPREKLDRVFSSEHL 206
Query: 327 LDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
+G+P AP PLVL + D+ G++F DA
Sbjct: 207 QGPDGVP------PAPPTPLVLTAVDYPGVEFAVDTDA 238
>gi|229101230|ref|ZP_04231994.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-28]
gi|228682198|gb|EEL36311.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-28]
Length = 245
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/283 (26%), Positives = 122/283 (43%), Gaps = 56/283 (19%)
Query: 88 HHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRT 147
H++K L + Y G R+ G+ GN + T++ +I + + +V KE C RT
Sbjct: 2 HNYK----LTIQYDGARYKGWQRLGNNDNTIQGKIESVISE---MVG--KEIEIIGCSRT 52
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D GV ++ QV +N K E+ +E ++ + LN+ LP DI +
Sbjct: 53 DAGVHALNQV------ANFKS------------DEKLVEHKVK--KYLNQYLPNDISITN 92
Query: 208 WSPAPTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEH 251
P F AR++ ++ Y Y W E LN+ +M+ A K VG H
Sbjct: 93 VEEVPDRFHARYNSKAKTYLYKIWNEEHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSH 152
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
DF F + + R V E+S E I++ G+ FL + VR +V L
Sbjct: 153 DFTAFSNAKSKK-KSMVREVYMLEVS------EEAGFVQIRVSGNGFLHNMVRKIVGALI 205
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
+G G D I ++L+ ++ Q N +A L L+S +F
Sbjct: 206 EVGLGQLDADAIPNILEE---KQRNQINCLAEASGLYLESIEF 245
>gi|434382918|ref|YP_006704701.1| tRNA-pseudouridine synthase TrmA [Brachyspira pilosicoli WesB]
gi|404431567|emb|CCG57613.1| tRNA-pseudouridine synthase TrmA [Brachyspira pilosicoli WesB]
Length = 247
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 112/252 (44%), Gaps = 51/252 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ + + Y G F+G+ N+ TV+ EI+KA++K + KK + Y CGRTD GV +
Sbjct: 4 IKITIQYDGTDFFGWQIQPNLR-TVQGEIYKAVQK----IYSKKSTIYG-CGRTDAGVHA 57
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV-RVLNRVLPKDIRVIGWSPAP 212
+GQV + E++ I+ V R LN LPKDIR+I
Sbjct: 58 LGQV--------------------ANFRVEKMLVPIERVTRALNSALPKDIRIIKSEVVD 97
Query: 213 TDFSARFSCISREYKY----------------FFWREN-LNLSAMESAGKKFVGEHDFRN 255
F+AR S REY Y +F+R+N +N + K VGEH+F +
Sbjct: 98 DSFNARASATFREYIYVVQNSDISVPFYERYSWFYRKNIINEKLINEYAKYLVGEHNFTS 157
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC + N + R++ + IRG+AFL + VR +V L +
Sbjct: 158 FCSTEDENDSKF-RYIERVR------AIRKKDTIYFIIRGNAFLHNMVRIIVGTLVEGQR 210
Query: 316 GLESIDVIESLL 327
++ IE +L
Sbjct: 211 KNMPVNFIEEIL 222
>gi|168211805|ref|ZP_02637430.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
gi|170710235|gb|EDT22417.1| tRNA pseudouridine synthase A [Clostridium perfringens B str. ATCC
3626]
Length = 248
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 107/244 (43%), Gaps = 51/244 (20%)
Query: 92 RYVALKVMYFGQRFYGFASD---GNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
R + + + Y G ++ G+ G+ TV+ ++ K L K +E CGRTD
Sbjct: 2 RNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTK-----MTSEEIQLIGCGRTD 56
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
GV + V +N K N+ M +E I+Y+ N LP+DIRV
Sbjct: 57 SGVHAKNYV------ANFK----TNSLM-------TLEQIIEYI---NEYLPEDIRVTEI 96
Query: 209 SPAPTDFSARFSCISREYKY--------------FFW--RENLNLSAMESAGKKFVGEHD 252
A F ARF+ S+ Y+Y + W E L+L AME K +G HD
Sbjct: 97 REASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHD 156
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
F++F + + N R + S E E N + +IKI G+ FL + VR +V L
Sbjct: 157 FKSFTSLKSKNKSTL-RTINSIEFH------ENNNILSIKINGNGFLLNMVRIIVGTLVD 209
Query: 313 IGQG 316
+G G
Sbjct: 210 VGLG 213
>gi|289449159|ref|ZP_06438903.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CPHL_A]
gi|289422117|gb|EFD19318.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CPHL_A]
Length = 256
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 92/230 (40%), Gaps = 39/230 (16%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV + + ++ + +G+ + + +R L R LP D
Sbjct: 27 AGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGD-------PEFLPLLRRLGRFLPAD 79
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK 245
+R++ + AP F ARFS + R Y Y W L+L AM +A +
Sbjct: 80 VRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASR 139
Query: 246 KFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
+G HDF FC+ A + + +R S L + AF W V
Sbjct: 140 DLMGLHDFAAFCRHREGATTIRDLQRLDWS----------RAGSLVTAHVTADAFCWSMV 189
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
R +V L +G+ + LL G R + +AP L L D+
Sbjct: 190 RSLVGALLAVGEHRRATTWCRELLTATG--RSSDFAVAPAHGLTLIQVDY 237
>gi|431912100|gb|ELK14238.1| tRNA pseudouridine synthase A [Pteropus alecto]
Length = 409
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 138/337 (40%), Gaps = 68/337 (20%)
Query: 46 EDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHF-KRYVALKVMYFGQR 104
+ KV G + G + EE + KK+K G KR + L V Y G+
Sbjct: 51 DKKVRSGWQGGAKVWEETEQQA--------KKLKSSADGEPRRKLPKRKIVLLVAYSGKG 102
Query: 105 FYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRCGRTDKGVSSVGQVI 158
++G + G+ + T+E ++ AL ++ + D ++ + RC RTDKGVS+ GQV+
Sbjct: 103 YHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVV 162
Query: 159 A--IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFS 216
+ ++L +I E +N LP IR++G F+
Sbjct: 163 SLKVWLIDDILEK-------------------------INSHLPSHIRILGLKRVTGGFN 197
Query: 217 ARFSCISREYKYFF------------WRENLNLSA-----MESAGKKFVGEHDFRNFCKM 259
++ C +R Y Y E LSA + ++ G H+F NF
Sbjct: 198 SKNRCDARTYLYMLPTFAFAHKDRDVQDETYRLSAETLRRVNRLLARYKGTHNFHNFTSQ 257
Query: 260 DAANVHNYKRHVTSFEISPCYISFE--GNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+ +R+V C FE G + IK+ G +F+ HQ+R MV ++ I +G
Sbjct: 258 KGPREPSAQRYVLDMF---CEEPFERDGLEFAVIKVTGQSFMTHQIRKMVGLVVAIAKGY 314
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
DV+E + AP + LVL+ F+
Sbjct: 315 APEDVLERSWGEAKV----DVPKAPGLGLVLERVHFE 347
>gi|398347904|ref|ZP_10532607.1| pseudouridylate synthase [Leptospira broomii str. 5399]
Length = 277
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 53/243 (21%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
AL + Y G FYG+ + PTV++EI KAL +L+A K + GRTD GV +
Sbjct: 11 ALLLEYDGGCFYGYQTQ-RQTPTVQNEIEKALA---ILLA--KPTRIYGAGRTDTGVHAR 64
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
G ++ +S IKE + ++ LN + + ++G +P P +
Sbjct: 65 GMIVNFKTKSKIKELS-------------------RFLLGLNALTDPGLSILGITPVPEN 105
Query: 215 FSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFCK 258
F+++FSC +REY+Y F+++ +++S + + GEHDFR+ K
Sbjct: 106 FNSQFSCTAREYEYLLLNSRIPRPIWKNRVFWYQHRIDVSRLRQELELLKGEHDFRSLAK 165
Query: 259 MDAANVHNYKRHV-----TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
A ++ N K + TS + SP E L +I+ + FL + +R + L I
Sbjct: 166 --ATSMRNRKTTIRVIYDTSLKESP-----EEPGLFRFRIKANGFLHNMIRILTGTLLEI 218
Query: 314 GQG 316
G
Sbjct: 219 ATG 221
>gi|168208061|ref|ZP_02634066.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|168215906|ref|ZP_02641531.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|169341141|ref|ZP_02863234.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|422345695|ref|ZP_16426609.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|422873893|ref|ZP_16920378.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
gi|169299748|gb|EDS81800.1| tRNA pseudouridine synthase A [Clostridium perfringens C str.
JGS1495]
gi|170660642|gb|EDT13325.1| tRNA pseudouridine synthase A [Clostridium perfringens E str.
JGS1987]
gi|182381869|gb|EDT79348.1| tRNA pseudouridine synthase A [Clostridium perfringens NCTC 8239]
gi|373227360|gb|EHP49674.1| tRNA pseudouridine synthase A 1 [Clostridium perfringens WAL-14572]
gi|380305126|gb|EIA17407.1| tRNA pseudouridine synthase A [Clostridium perfringens F262]
Length = 248
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 107/244 (43%), Gaps = 51/244 (20%)
Query: 92 RYVALKVMYFGQRFYGFASD---GNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
R + + + Y G ++ G+ G+ TV+ ++ K L K +E CGRTD
Sbjct: 2 RNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTK-----MTSEEIQLIGCGRTD 56
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
GV + V +N K N+ M +E I+Y+ N LP+DIRV
Sbjct: 57 SGVHAKNYV------ANFK----TNSLM-------TLEQIIEYI---NEYLPEDIRVTEI 96
Query: 209 SPAPTDFSARFSCISREYKY--------------FFW--RENLNLSAMESAGKKFVGEHD 252
A F ARF+ S+ Y+Y + W E L+L AME K +G HD
Sbjct: 97 REASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHD 156
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
F++F + + N R + S E E N + +IKI G+ FL + VR +V L
Sbjct: 157 FKSFTSLKSKNKSTL-RTINSIEFH------ENNNILSIKINGNGFLLNMVRIIVGTLVD 209
Query: 313 IGQG 316
+G G
Sbjct: 210 VGLG 213
>gi|422420178|ref|ZP_16497133.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL N1-067]
gi|313631806|gb|EFR98984.1| tRNA pseudouridine synthase A [Listeria seeligeri FSL N1-067]
Length = 248
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 80/285 (28%), Positives = 119/285 (41%), Gaps = 61/285 (21%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+ + Y G FYG+ N TV++EI KAL+K + K + GRTD GV
Sbjct: 3 RYKAI-ISYDGSGFYGYQVQPNTR-TVQAEIEKALKK----MHKGKSVRVTASGRTDTGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEID-----YVRVLNRVLPKDIRVI 206
+ GQVI + E+D + + L + P DI +
Sbjct: 57 HAKGQVI-------------------------HFDSELDISAEKFQKALQVMTPFDISFL 91
Query: 207 GWSPAPTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGE 250
A DF ARF + +EY+Y R LNL M+ A ++ VGE
Sbjct: 92 IVEEALADFHARFGTVGKEYRYVVKRTKVFDPFSRNFALHYPYELNLEKMKLASERLVGE 151
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
HDF +FC +A + T + I E + I +G+ FL++ VR + L
Sbjct: 152 HDFTSFC---SARTERDSKVRTLYSID---FYEEDDDTLVIAFQGNGFLYNMVRILTGTL 205
Query: 311 FMIGQG-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
GQG + D+ ++LL + +K AP L L D++
Sbjct: 206 LDAGQGRISPDDITKALLARD--RQKLISKTAPPQGLYLWRVDYE 248
>gi|417654925|ref|ZP_12304641.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21193]
gi|329730365|gb|EGG66755.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21193]
Length = 267
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTDLNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|456389439|gb|EMF54879.1| truA protein [Streptomyces bottropensis ATCC 25435]
Length = 288
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 100/245 (40%), Gaps = 44/245 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G F G+A TV+ EI AL R + ++ + GRTD GV +
Sbjct: 12 VRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDAL---RTVTRSREAFELTVAGRTDAGVHA 68
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + ETV E E + R+ R LP+D+RV AP+
Sbjct: 69 RGQVAHV--------------DLPETVWREHHEKLLK--RLAGR-LPRDVRVWALREAPS 111
Query: 214 DFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFRNF 256
F+ARFS + R Y Y W + L++ AM A + +GEHDF +
Sbjct: 112 GFNARFSAVWRRYAYRVTDNPGGVDPLLRSHVLWHDWALDVDAMNEAARLLLGEHDFAAY 171
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
CK + T + + + + +R AF + VR ++ L +G G
Sbjct: 172 CK-------RREGATTIRTLQELSLVRGDDGIITATVRADAFCHNMVRSLIGALLFVGDG 224
Query: 317 LESID 321
D
Sbjct: 225 HRGTD 229
>gi|417747764|ref|ZP_12396223.1| pseudouridylate synthase [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336460702|gb|EGO39592.1| pseudouridylate synthase [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 248
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 94/230 (40%), Gaps = 39/230 (16%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNA-SMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV + ++ NA V E + +R L R LP D
Sbjct: 19 AGRTDAGVHATGQVAHL----DVPGTALPNAYPRAPHVGEAEFGP---LLRRLGRFLPTD 71
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK 245
+RV+ + AP F ARFS + R Y Y W L++ AM +A +
Sbjct: 72 VRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWPRPLDVEAMAAASR 131
Query: 246 KFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
+G HDF FC+ +A + + +R + +G+ + A ++ AF W V
Sbjct: 132 DLLGLHDFAAFCRHRENATTIRDLQR---------LDWTRDGDLITA-RVSADAFCWSMV 181
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
R +V L +G+ + LL R Y AP L L D+
Sbjct: 182 RSLVGALLAVGENRRPVSWCRELLSATN--RSSDYATAPAHGLTLVGVDY 229
>gi|21223110|ref|NP_628889.1| tRNA pseudouridine synthase A [Streptomyces coelicolor A3(2)]
gi|289769686|ref|ZP_06529064.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24]
gi|8134769|sp|O86776.1|TRUA_STRCO RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|3449243|emb|CAA20387.1| putative pseudouridylate synthase [Streptomyces coelicolor A3(2)]
gi|289699885|gb|EFD67314.1| tRNA pseudouridine synthase A [Streptomyces lividans TK24]
Length = 284
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 103/252 (40%), Gaps = 45/252 (17%)
Query: 82 MSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY 141
MS + F R V L + Y G F G+A TV+ EI AL R + ++
Sbjct: 1 MSDEVEAGFVR-VRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDAL---RTVTRSRETYEL 56
Query: 142 SRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPK 201
+ GRTD GV + GQV + L +E E + ++ L LP+
Sbjct: 57 TVAGRTDAGVHARGQVAHVDL-----------------PREVWAEHHVKLLKRLAGRLPR 99
Query: 202 DIRVIGWSPAPTDFSARFSCISREYKY----------------FFWRE-NLNLSAMESAG 244
D+RV AP+ F+ARFS + R Y Y W + L++ AM +A
Sbjct: 100 DVRVWALREAPSGFNARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWPLDVDAMNAAA 159
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
+ +GEHDF +CK + T + + + + +R AF + VR
Sbjct: 160 RGLLGEHDFAAYCK-------KREGATTIRTLQELSLVRGEDGIVTATVRADAFCHNMVR 212
Query: 305 CMVAVLFMIGQG 316
++ L +G G
Sbjct: 213 SLIGALLFVGDG 224
>gi|423473427|ref|ZP_17450169.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6O-2]
gi|402425912|gb|EJV58054.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6O-2]
Length = 245
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 118/275 (42%), Gaps = 52/275 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ GN + T++ +I + + +V KE+ C RTD GV ++
Sbjct: 6 LTIQYDGARYKGWQRLGNNDNTIQGKIESIISE---MVG--KETEIIGCSRTDAGVHALN 60
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N E + E +++ + LN+ LP DI + P F
Sbjct: 61 QVA--------------NFQSDEKLVEHKVK------KYLNQYLPNDISITSVEEVPDRF 100
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E LN+ +M+ A K +G HDF F
Sbjct: 101 HARYNSKAKTYLYKIWNEEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLIGSHDFTAFSNA 160
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + R V + ++ FE + I++ G+ FL + VR +V L +G G
Sbjct: 161 KSKK-KSMVREVYTLDV------FEESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLE 213
Query: 320 IDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
D I ++L+ ++ Q N +A L L++ F
Sbjct: 214 ADAIPNILEE---KQRNQINCLAEASGLYLENVKF 245
>gi|237741391|ref|ZP_04571872.1| tRNA pseudouridine synthase A [Fusobacterium sp. 4_1_13]
gi|229430923|gb|EEO41135.1| tRNA pseudouridine synthase A [Fusobacterium sp. 4_1_13]
Length = 245
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 99/237 (41%), Gaps = 46/237 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ ++ Y G R+YGF + + TV+ EI K L + K+E + GRTD+GV +
Sbjct: 6 IKIEFRYDGSRYYGFQRQPD-KITVQGEIEKILR-----IVTKEEINLISAGRTDRGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV Y SNI IE Y +L R LP DI ++
Sbjct: 60 NHQVSNFYTSSNI-----------------PIEK---YKYLLTRALPNDIDILSVEEVDE 99
Query: 214 DFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNFCKM 259
+F+AR + REY Y F +E + +E FVG HDF+NF
Sbjct: 100 NFNARHNAKMREYIYIISWKKNPFEARYCKFVKEKIIAKKLEKIFSDFVGVHDFKNFRLN 159
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + +T EI + + G I I+GSAFL QVR MV I G
Sbjct: 160 DCVS------KITIREIYQIEVKYFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYG 210
>gi|229074353|ref|ZP_04207391.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-18]
gi|228708795|gb|EEL60930.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock4-18]
Length = 245
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 123/283 (43%), Gaps = 56/283 (19%)
Query: 88 HHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRT 147
H++K L + Y G R+ G+ GN + T++ +I + + +V KE C RT
Sbjct: 2 HNYK----LTIQYDGARYKGWQRLGNNDNTIQGKIESVISE---MVG--KEIEIIGCSRT 52
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D GV ++ QV +N K E+ +E ++ + LN+ LP DI +
Sbjct: 53 DAGVHALNQV------ANFKS------------DEKLVEHKVK--KYLNQYLPNDISITN 92
Query: 208 WSPAPTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEH 251
P F AR++ ++ Y Y W E LN+ +M+ A K VG H
Sbjct: 93 VEEVPDRFHARYNSKAKTYLYKIWNEEHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSH 152
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
DF F + + R V + E+S E I++ G+ FL + VR +V L
Sbjct: 153 DFTAFSNAKSKK-KSMVREVYTLEVS------EEAGFVQIRVSGNGFLHNMVRKIVGALI 205
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
+G G + I ++L+ ++ Q N +A L L+S +F
Sbjct: 206 EVGLGQLDAEAIPNILEE---KQRNQINCLAEASGLYLESVEF 245
>gi|68536845|ref|YP_251550.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium K411]
gi|68264444|emb|CAI37932.1| tRNA pseudouridine synthase A [Corynebacterium jeikeium K411]
Length = 328
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 107/269 (39%), Gaps = 44/269 (16%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L+V Y G F+G+A+ TV + + +L + + GRTD GV +
Sbjct: 31 VRLEVAYDGTDFHGWATQSGGLRTVAGVL-----QEKLSLVTRHPIELVVAGRTDAGVHA 85
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV C+ + + ++ + D VR L+R+LP D+R+ G S AP
Sbjct: 86 SGQV-----------CHADIPV--DAFEQRSLTRPEDLVRRLSRMLPADVRLHGASVAPQ 132
Query: 214 DFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y WR ++L ++A +G +DF F
Sbjct: 133 GFDARFSALRRHYIYRVTTHPAGPVPVRARDTAAWRHPIDLEKTQAASDALIGLNDFAAF 192
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGN-QLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
CK A R + F +S E Q + AF W VR +V +G
Sbjct: 193 CK--AREGATTVRELQEFRW--VDVSTEAEPQTYEAHVTADAFCWSMVRSLVGAALTVGS 248
Query: 316 GLESIDVIESLLD----TNGIPRKPQYNM 340
G D LL ++ +P P +
Sbjct: 249 GKRPDDFTPGLLKETKRSSAVPVAPAEGL 277
>gi|308507857|ref|XP_003116112.1| CRE-PUS-1 protein [Caenorhabditis remanei]
gi|308251056|gb|EFO95008.1| CRE-PUS-1 protein [Caenorhabditis remanei]
Length = 438
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 133/315 (42%), Gaps = 61/315 (19%)
Query: 67 ESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKAL 126
+SGG KK + K + +Y A+ + Y G+++YG ++ PT+ES++ +A+
Sbjct: 17 QSGGVHKEPKKPRVKQA--------KY-AMLLGYQGKKYYGMQLQKDL-PTIESKLLEAM 66
Query: 127 EKTRLLVADKKES----HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQE 182
EK + A +++ + R RTD+ VS+ Q+ + L + + T+ A
Sbjct: 67 EKAGWITAAQRDKPFDFFFQRAARTDRAVSAARQMCGMQLPRDDDKYQTDGAG------- 119
Query: 183 EQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKY------FFWRENLN 236
VLN +LP DIRV G F + C R Y Y F L
Sbjct: 120 -----------VLNNLLPDDIRVFGMRRTINFFHPQKQCDYRTYSYTCPSFVFAKPTELT 168
Query: 237 LSAMESAGKK----------FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYI----- 281
SA + + G H+F N+ A N + R++ SFE ++
Sbjct: 169 NSAFRLPKETLAEVNDILSIYKGTHNFFNYTAKRAYNDMSSNRYIVSFECKEPFLFRDEF 228
Query: 282 SFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN--GIPRKPQYN 339
E + I ++G +F+ HQ+R MV ++ + + L I+ + IP
Sbjct: 229 RKEDVEFVQIVVKGQSFVLHQIRKMVGMVITVVRELHLKSAIQRSFEGQRMDIP------ 282
Query: 340 MAPEIPLVLQSCDFD 354
MAP + L+L+ +D
Sbjct: 283 MAPGLGLLLERTHYD 297
>gi|229056264|ref|ZP_04195685.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603]
gi|228721069|gb|EEL72607.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH603]
Length = 268
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 52/275 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ GN + T++ +I + + +V KE C RTD GV ++
Sbjct: 29 LTIQYDGARYKGWQRLGNNDNTIQGKIESIISE---MVG--KEIEIIGCSRTDAGVHALN 83
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N E + E +++ + LN+ LP DI + P F
Sbjct: 84 QVA--------------NFQSDEKLVEHKVK------KYLNQYLPNDISITSVEEVPDRF 123
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E LN+ +M+ A K VG HDF F
Sbjct: 124 HARYNSKAKTYLYKIWNEEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNA 183
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + R V + ++S E + I++ G+ FL + VR +V L +G G
Sbjct: 184 KSKK-KSMVREVYTLDVS------EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLE 236
Query: 320 IDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
+D I ++L+ ++ Q N +A L L+ +F
Sbjct: 237 VDAIPNILEE---KQRNQINCLAEASGLYLEKIEF 268
>gi|196008069|ref|XP_002113900.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens]
gi|190582919|gb|EDV22990.1| hypothetical protein TRIADDRAFT_57795 [Trichoplax adhaerens]
Length = 385
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 120/269 (44%), Gaps = 50/269 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESH----YSRCGR 146
KR VAL + + G ++G + + T+E ++ AL K + KE + R R
Sbjct: 45 KRKVALLLGFCGAGYFGMQRNRGTK-TIEEDLINALFKAGAIPEAAKEHEQKMAFQRASR 103
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGV + QV++ + + D D + +N LP++IRV
Sbjct: 104 TDKGVHAAAQVVSFKMF---------------------VVD--DVIAKINSHLPREIRVF 140
Query: 207 GWSPAPTDFSARFSCISREYKYFFW--------RENLNLSAMESAGKK-------FVGEH 251
G F+++ +C +R YKY ++N+ + +E+ K +VG
Sbjct: 141 GHFRVTKGFNSKTACDARTYKYVMPTYAFANKEKKNMYILVIEATIKHVRDILAMYVGTR 200
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQL--CAIKIRGSAFLWHQVRCMVAV 309
+F NF A + KR++ F+ C + F N L + ++G +F+ HQ+R M+ +
Sbjct: 201 NFHNFTSKKAYEDDSAKRYIMQFD---CGLPFVRNNLEFVTLTVKGQSFMLHQIRKMIGL 257
Query: 310 LFMIGQGLESIDVIESLL--DTNGIPRKP 336
+ I +G +I+ +E D IPR P
Sbjct: 258 MIGIVRGDATIEAMEKAWEKDRVDIPRAP 286
>gi|423602052|ref|ZP_17578052.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD078]
gi|401227916|gb|EJR34444.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD078]
Length = 245
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 52/275 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ GN + T++ +I + + +V KE C RTD GV ++
Sbjct: 6 LTIQYDGARYKGWQRLGNNDNTIQGKIESIISE---MVG--KEIEIIGCSRTDAGVHALN 60
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N E + E +++ + LN+ LP DI + P F
Sbjct: 61 QVA--------------NFQSDEKLVEHKVK------KYLNQYLPNDISITSVEEVPDRF 100
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E LN+ +M+ A K VG HDF F
Sbjct: 101 HARYNSKAKTYLYKIWNEEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNA 160
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + R V + ++S E + I++ G+ FL + VR +V L +G G
Sbjct: 161 KSKK-KSMVREVYTLDVS------EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLE 213
Query: 320 IDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
D I S+L+ ++ Q N +A L L++ +F
Sbjct: 214 ADAIPSILEE---KQRNQINCLAEASGLYLENVEF 245
>gi|374586952|ref|ZP_09660044.1| tRNA pseudouridine synthase A [Leptonema illini DSM 21528]
gi|373875813|gb|EHQ07807.1| tRNA pseudouridine synthase A [Leptonema illini DSM 21528]
Length = 292
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 47/255 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+R AL + Y G R +GF + + E TV+S + +T L V ++E GRTD G
Sbjct: 3 RRRYALTIAYDGSRLFGFQTQKDGE-TVQSRL-----ETALSVLLREEIKIQAAGRTDSG 56
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQV++ + I+E ++ ++R ++ + ++ + +
Sbjct: 57 VHATGQVVSFRTYALIEESDS-------------------FLRSIDALAGPSVQAVKFHE 97
Query: 211 APTDFSARFSCISREYKY--------------FFWR--ENLNLSAMESAGKKFVGEHDFR 254
P DF RF C++REY+Y + W ++L+L A+ GEH+F
Sbjct: 98 VPYDFHPRFDCVAREYEYLIHQARTPSLFMSPYTWTVPDSLDLEAVFPELLALQGEHNFE 157
Query: 255 NFCKMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
F K AN K R++ + Y G L A+ IRG+AFL + +R +V
Sbjct: 158 AFTKR--ANPEEKKERYLDHIALQRRYDPVGGATLLALTIRGNAFLHNMIRIIVGSFVDR 215
Query: 314 GQGLESI---DVIES 325
G S+ D+++S
Sbjct: 216 ASGRLSMSLPDIVKS 230
>gi|224082522|ref|XP_002306727.1| predicted protein [Populus trichocarpa]
gi|222856176|gb|EEE93723.1| predicted protein [Populus trichocarpa]
Length = 65
Score = 82.8 bits (203), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/59 (67%), Positives = 46/59 (77%)
Query: 126 LEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQ 184
+EKTRLLV DKKE YSRCGRTDKGVS+VGQVIA+YLRS +K+ + N ET EEQ
Sbjct: 3 VEKTRLLVGDKKEIQYSRCGRTDKGVSAVGQVIALYLRSKLKDVDAQNKHSWETFPEEQ 61
>gi|418563554|ref|ZP_13127990.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21262]
gi|371970792|gb|EHO88208.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21262]
Length = 267
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNIVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|294783832|ref|ZP_06749154.1| tRNA pseudouridine synthase A [Fusobacterium sp. 1_1_41FAA]
gi|294479644|gb|EFG27423.1| tRNA pseudouridine synthase A [Fusobacterium sp. 1_1_41FAA]
Length = 246
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 105/240 (43%), Gaps = 46/240 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + ++ Y G R+YGF + + TV+ EI K L+ + K++ + GRTD+G
Sbjct: 3 RKNIKIEFRYDGSRYYGFQRQPD-KVTVQGEIEKILK-----IVTKEDINLISAGRTDRG 56
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y SNI V++ Y +L R LPKDI ++
Sbjct: 57 VHANQQVSNFYTSSNI------------PVEK--------YKYLLTRALPKDIDILSVEE 96
Query: 211 APTDFSARFSCISREYKYFF-WREN-------------LNLSAMESAGKKFVGEHDFRNF 256
+F+AR REY Y W +N +++ ++ F+G HDFRNF
Sbjct: 97 VDKNFNARHDAKMREYIYIISWEKNPFEARYCKFVKNKIDVEKLKKIFSSFLGIHDFRNF 156
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + +T EI I++ I IRGSAFL QVR MV + G
Sbjct: 157 RLSDCVS------KITIREIYSIDINYFSENKLKIYIRGSAFLKSQVRIMVGTALEVYYG 210
>gi|121639375|ref|YP_979599.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148663320|ref|YP_001284843.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra]
gi|224991871|ref|YP_002646560.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Tokyo
172]
gi|254552559|ref|ZP_05143006.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289445055|ref|ZP_06434799.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46]
gi|289571689|ref|ZP_06451916.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T17]
gi|289576191|ref|ZP_06456418.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis K85]
gi|289752179|ref|ZP_06511557.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T92]
gi|289755588|ref|ZP_06514966.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
EAS054]
gi|289759618|ref|ZP_06518996.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T85]
gi|289763637|ref|ZP_06523015.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis GM
1503]
gi|297636114|ref|ZP_06953894.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN 4207]
gi|297733114|ref|ZP_06962232.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN R506]
gi|306777802|ref|ZP_07416139.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu001]
gi|306782521|ref|ZP_07420858.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu002]
gi|306809459|ref|ZP_07446127.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu007]
gi|313660445|ref|ZP_07817325.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis KZN
V2475]
gi|339633460|ref|YP_004725102.1| tRNA pseudouridine synthase A [Mycobacterium africanum GM041182]
gi|340628426|ref|YP_004746878.1| putative tRNA pseudouridine synthase A TRUA [Mycobacterium canettii
CIPT 140010059]
gi|378773236|ref|YP_005172969.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Mexico]
gi|385992688|ref|YP_005910986.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CCDC5180]
gi|385996324|ref|YP_005914622.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis CCDC5079]
gi|424806025|ref|ZP_18231456.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
W-148]
gi|424949083|ref|ZP_18364779.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis NCGM2209]
gi|448824813|ref|NP_217972.3| Probable tRNA pseudouridine synthase a TruA (pseudouridylate
synthase I) (pseudouridine synthase I) (uracil
hydrolyase) [Mycobacterium tuberculosis H37Rv]
gi|449065566|ref|YP_007432649.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Korea
1168P]
gi|31620228|emb|CAD95671.1| PROBABLE TRNA PSEUDOURIDINE SYNTHASE A TRUA (PSEUDOURIDYLATE
SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL
HYDROLYASE) [Mycobacterium bovis AF2122/97]
gi|121495023|emb|CAL73509.1| Probable tRNA pseudouridine synthase A truA [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|148507472|gb|ABQ75281.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis H37Ra]
gi|224774986|dbj|BAH27792.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Tokyo
172]
gi|289417974|gb|EFD15214.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis T46]
gi|289540622|gb|EFD45200.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis K85]
gi|289545443|gb|EFD49091.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T17]
gi|289692766|gb|EFD60195.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T92]
gi|289696175|gb|EFD63604.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
EAS054]
gi|289711143|gb|EFD75159.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis GM
1503]
gi|289715182|gb|EFD79194.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis T85]
gi|308213887|gb|EFO73286.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu001]
gi|308324838|gb|EFP13689.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu002]
gi|308344299|gb|EFP33150.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
SUMu007]
gi|326905301|gb|EGE52234.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
W-148]
gi|339296278|gb|AEJ48389.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CCDC5079]
gi|339299881|gb|AEJ51991.1| tRNA pseudouridine synthase A truA [Mycobacterium tuberculosis
CCDC5180]
gi|339332816|emb|CCC28539.1| putative tRNA pseudouridine synthase A TRUA (pseudouridylate
synthase I) [Mycobacterium africanum GM041182]
gi|340006616|emb|CCC45803.1| putative tRNA pseudouridine synthase A TRUA (pseudouridylate
synthase I) (pseudouridine synthase I) (uracil
hydrolyase) [Mycobacterium canettii CIPT 140010059]
gi|341603396|emb|CCC66077.1| probable tRNA pseudouridine synthase A truA [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|356595557|gb|AET20786.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Mexico]
gi|358233598|dbj|GAA47090.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis NCGM2209]
gi|379029823|dbj|BAL67556.1| tRNA pseudouridine synthase A [Mycobacterium tuberculosis str.
Erdman = ATCC 35801]
gi|440582948|emb|CCG13351.1| putative TRNA PSEUDOURIDINE SYNTHASE A TRUA (PSEUDOURIDYLATE
SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL
HYDROLYASE) [Mycobacterium tuberculosis 7199-99]
gi|444897011|emb|CCP46277.1| Probable tRNA pseudouridine synthase a TruA (pseudouridylate
synthase I) (pseudouridine synthase I) (uracil
hydrolyase) [Mycobacterium tuberculosis H37Rv]
gi|449034074|gb|AGE69501.1| tRNA pseudouridine synthase A [Mycobacterium bovis BCG str. Korea
1168P]
Length = 256
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 92/230 (40%), Gaps = 39/230 (16%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSN-IKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV + + ++ + +G+ + + +R L R LP D
Sbjct: 27 AGRTDAGVHASGQVAHVDVPADALPNAYPRAGHVGD-------PEFLPLLRRLGRFLPAD 79
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK 245
+R++ + AP F ARFS + R Y Y W L+L AM +A +
Sbjct: 80 VRILDITRAPAGFDARFSALRRHYVYRLSTAPYGVEPQQARYITAWPRELDLDAMTAASR 139
Query: 246 KFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
+G HDF FC+ A + + +R S L + AF W V
Sbjct: 140 DLMGLHDFAAFCRHREGATTIRDLQRLDWS----------RAGTLVTAHVTADAFCWSMV 189
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
R +V L +G+ + LL G R + +AP L L D+
Sbjct: 190 RSLVGALLAVGEHRRATTWCRELLTATG--RSSDFAVAPAHGLTLIQVDY 237
>gi|229095128|ref|ZP_04226123.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-29]
gi|423444609|ref|ZP_17421514.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG4X2-1]
gi|423450436|ref|ZP_17427314.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5O-1]
gi|423467658|ref|ZP_17444426.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6O-1]
gi|423537060|ref|ZP_17513478.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB2-9]
gi|423542785|ref|ZP_17519174.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB4-10]
gi|228688313|gb|EEL42196.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock3-29]
gi|401124821|gb|EJQ32582.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5O-1]
gi|401167843|gb|EJQ75117.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB4-10]
gi|402410531|gb|EJV42932.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG4X2-1]
gi|402413273|gb|EJV45619.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG6O-1]
gi|402460244|gb|EJV91967.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuB2-9]
Length = 245
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 123/283 (43%), Gaps = 56/283 (19%)
Query: 88 HHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRT 147
H++K L + Y G R+ G+ GN + T++ +I + + +V KE C RT
Sbjct: 2 HNYK----LTIQYDGARYKGWQRLGNNDNTIQGKIESVISE---MVG--KEIEIIGCSRT 52
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D GV ++ QV +N K E+ +E ++ + LN+ LP DI +
Sbjct: 53 DAGVHALNQV------ANFKS------------DEKLVEHKVK--KYLNQYLPNDISITS 92
Query: 208 WSPAPTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEH 251
P F AR++ ++ Y Y W E LN+ +M+ A K VG H
Sbjct: 93 VEEVPDRFHARYNSKAKTYLYKIWNEEHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSH 152
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
DF F + + R V + E+S E I++ G+ FL + VR +V L
Sbjct: 153 DFTAFSNAKSKK-KSMVREVYTLEVS------EEAGFVQIRVSGNGFLHNMVRKIVGALI 205
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
+G G + I ++L+ ++ Q N +A L L+S +F
Sbjct: 206 EVGLGQLDAEAIPNILEE---KQRNQINCLAEASGLYLESVEF 245
>gi|195158909|ref|XP_002020326.1| GL13924 [Drosophila persimilis]
gi|194117095|gb|EDW39138.1| GL13924 [Drosophila persimilis]
Length = 409
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 134/317 (42%), Gaps = 55/317 (17%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGR 146
++ A+ + Y G +YG + M+ T+E E+FKA+ K + + D + + + R R
Sbjct: 69 RKKSAILLSYCGANYYGMQRNPGMQ-TIEEELFKAMLKHKWITEDSFDQVQIACFQRAAR 127
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ Q+ ++ ++ +E+D + N LP+ IR+
Sbjct: 128 TDKGVSAARQICSV-----------------------KLPEELD-LEAFNADLPEQIRLF 163
Query: 207 GWSPAPTDFSARFSCISREYKY------------------FFWRENLNLSAMESAGKKFV 248
G F+A+ C +R Y Y F L L ++ K +
Sbjct: 164 GVERVTKGFNAKDQCNARTYTYTLPTVAFASCEAESEQDTFRITPEL-LDRVKETLKLYE 222
Query: 249 GEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVA 308
G +F NF + KR + +F S + S +G + +K++G +F+ HQ+R MV
Sbjct: 223 GTKNFHNFTSKKNFLDPSAKRFIMAFTSSEPFQSPQGVEFVTLKVKGQSFMLHQIRKMVG 282
Query: 309 VLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDL 368
+ I +G + +E L + MAP + LVL + ++ D H+
Sbjct: 283 LAIAIVRGNTTAITLERALTEERL----DLPMAPGLGLVLDTVHYERYNERYGKDGIHN- 337
Query: 369 RLHLRNECQVYQLQAAI 385
L E Q Q+QA +
Sbjct: 338 --PLTWEAQETQVQAFV 352
>gi|41410333|ref|NP_963169.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|440779713|ref|ZP_20958423.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp.
paratuberculosis S5]
gi|51316707|sp|Q73S41.1|TRUA_MYCPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|41399167|gb|AAS06785.1| TruA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|436719799|gb|ELP44151.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 251
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 94/230 (40%), Gaps = 39/230 (16%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNA-SMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV + ++ NA V E + +R L R LP D
Sbjct: 22 AGRTDAGVHATGQVAHL----DVPGTALPNAYPRAPHVGEAEFGP---LLRRLGRFLPTD 74
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK 245
+RV+ + AP F ARFS + R Y Y W L++ AM +A +
Sbjct: 75 VRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWPRPLDVEAMAAASR 134
Query: 246 KFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
+G HDF FC+ +A + + +R + +G+ + A ++ AF W V
Sbjct: 135 DLLGLHDFAAFCRHRENATTIRDLQR---------LDWTRDGDLITA-RVSADAFCWSMV 184
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
R +V L +G+ + LL R Y AP L L D+
Sbjct: 185 RSLVGALLAVGENRRPVSWCRELLSATN--RSSDYATAPAHGLTLVGVDY 232
>gi|418421871|ref|ZP_12995044.1| tRNA pseudouridine synthase A [Mycobacterium abscessus subsp.
bolletii BD]
gi|363995787|gb|EHM17004.1| tRNA pseudouridine synthase A [Mycobacterium abscessus subsp.
bolletii BD]
Length = 277
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 113/275 (41%), Gaps = 39/275 (14%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ N TV + +A +V D + + + GRTD GV + G
Sbjct: 3 LDIAYDGTDFAGWATQVNQR-TVAGVLAEAFTT---IVGDPVQLYAA--GRTDAGVHATG 56
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + + +++ VR L+R LP D+RV+ + AP F
Sbjct: 57 QVAHLDVPTACLPGLRGRYRPAGAPEFDRL------VRRLSRFLPNDVRVLDIARAPAHF 110
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y W L++ AM A + +G DF FC+
Sbjct: 111 DARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLGLRDFAAFCR 170
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + T E+ +G +L A + AF W VR +V + +G+G
Sbjct: 171 -------HREGATTIRELQRFDWGVDGQRLTAY-VSADAFCWSMVRSLVGAVLAVGEGRR 222
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ LL N R + AP L L D+
Sbjct: 223 PVQWCVDLL--NKERRSSDFAAAPARGLTLVGVDY 255
>gi|154684666|ref|YP_001419827.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens FZB42]
gi|166228678|sp|A7Z0S0.1|TRUA_BACA2 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|154350517|gb|ABS72596.1| TruA [Bacillus amyloliquefaciens FZB42]
Length = 247
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 121/280 (43%), Gaps = 55/280 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
V + Y G F G+ ++P TV+SE+ KAL + D + YS GRTD
Sbjct: 3 VKCTIAYDGHLFNGY----QVQPGKRTVQSELEKAL--AVIHKTDGRVPVYS-SGRTDSD 55
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQVI +T + GE + LN +LP DI V
Sbjct: 56 VHAAGQVI---------HFDTPLSIPGEK-----------WPFALNALLPDDIAVKTAEI 95
Query: 211 APTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFR 254
A F ARFS + +EY+YF + E LN+ M A + VG HDF
Sbjct: 96 ADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHFAYPLNVQKMREASRHLVGTHDFT 155
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+FC D A V + R + + + + +G Q+ +I G+ FL++ VR + L G
Sbjct: 156 SFCAADTA-VQDKVRTIYELDWTE---TVDGLQM---RITGNGFLYNMVRIIAGTLLDTG 208
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G S D ++++L+ R+ AP L L S +D
Sbjct: 209 AGKFSPDDVKAMLEAKD--REAAGRTAPGHGLYLWSVCYD 246
>gi|448308199|ref|ZP_21498078.1| tRNA pseudouridine synthase A [Natronorubrum bangense JCM 10635]
gi|445594309|gb|ELY48471.1| tRNA pseudouridine synthase A [Natronorubrum bangense JCM 10635]
Length = 282
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 106/280 (37%), Gaps = 30/280 (10%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVAD-KKESHYSRCGRTDKGVSS 153
A ++ Y G +YGF ++ TVE IF AL +L D K + Y+ GRTD GVS+
Sbjct: 3 AFRIAYDGTGYYGFQRQPDVS-TVEDTIFDALRSLDVLAPDADKPAGYAAAGRTDAGVSA 61
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q I + + + R LN LP +R ++
Sbjct: 62 LAQTITLEGPAWLTP------------------------RALNAELPAAVRAWAFADVDD 97
Query: 214 DFSARFSCISREYKYFFWRENL--NLSAMESAGKKFVGEHDFRNFCKM--DAANVHNYKR 269
F A R Y Y + + SA + + + + F C+ D + HN
Sbjct: 98 SFHATHDATRRTYTYHLYAPAAVDDSSATPAEIEHPIDDDRFHAACEALSDTHDFHNLTP 157
Query: 270 HVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDT 329
+ E SP + + + F VR +V++ + G S I+ ++
Sbjct: 158 DDHNTERSPTLSAIRDGDYLVVTVTAGGFARELVRRLVSLAQTVATGAASFAKIDRTFES 217
Query: 330 NGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLR 369
+P AP PLVL D+ GL+F DA R
Sbjct: 218 EPLPGHEGIAPAPPEPLVLTDVDYPGLEFDIDDDAASSAR 257
>gi|118462566|ref|YP_883531.1| tRNA pseudouridine synthase A [Mycobacterium avium 104]
gi|254776828|ref|ZP_05218344.1| tRNA pseudouridine synthase A [Mycobacterium avium subsp. avium
ATCC 25291]
gi|118163853|gb|ABK64750.1| tRNA pseudouridine synthase A [Mycobacterium avium 104]
Length = 251
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 94/230 (40%), Gaps = 39/230 (16%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNA-SMGETVQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV + ++ NA V E + +R L R LP D
Sbjct: 22 AGRTDAGVHATGQVAHL----DVPGTALPNAYPRAPHVGEAEFGP---LLRRLGRFLPTD 74
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGK 245
+RV+ + AP F ARFS + R Y Y W L++ AM +A +
Sbjct: 75 VRVVDITRAPAGFDARFSALRRHYVYRLSTAPWGVLPQQARYVTAWPRPLDVEAMAAASR 134
Query: 246 KFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
+G HDF FC+ +A + + +R + +G+ + A ++ AF W V
Sbjct: 135 DLLGLHDFAAFCRHRENATTIRDLQR---------LDWTRDGDLIIA-RVSADAFCWSMV 184
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
R +V L +G+ + LL R Y AP L L D+
Sbjct: 185 RSLVGALLAVGENRRPVSWCRELLSATN--RSSDYATAPAHGLTLVGVDY 232
>gi|408421475|ref|YP_006762889.1| tRNA pseudouridine synthase I TruA3 [Desulfobacula toluolica Tol2]
gi|405108688|emb|CCK82185.1| TruA3: tRNA pseudouridine synthase I [Desulfobacula toluolica Tol2]
Length = 271
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 115/275 (41%), Gaps = 50/275 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
+ + Y GQ +YG+ + +PT++ + A+ K L + + S GRTD+G + G
Sbjct: 15 MDIRYDGQNYYGWQRHKD-KPTIQGALEHAVTKCLGLRHNVEGS-----GRTDRGTHATG 68
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV +I L +I E +E + LN VL K+I + F
Sbjct: 69 QVASIRLPKDINE------------KEALFK--------LNSVLEKNIEITSLKKMSDSF 108
Query: 216 SARFSCISREYKYFFWR----------------ENLNLSAMESAGKKFVGEHDFRNFCKM 259
AR S I + Y Y W E LN+ AM+ A F G DF +F K
Sbjct: 109 HARESAIGKCYIYKIWNHPRLPSEMNGKVWYVPEKLNVKAMDKACSYFTGTKDFASFAK- 167
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
V NYKR + + ++ + + LC I FL+ VR +V L +G+G
Sbjct: 168 ----VPNYKRATSVRTVHSLTLTEKDSLLC-FSIIADGFLYKMVRNIVRALVKVGEGRSK 222
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+D I +++ RK AP L L + +D
Sbjct: 223 VDDIPRIIEAKS--RKAAPGTAPASGLYLDTVFYD 255
>gi|379021884|ref|YP_005298546.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M013]
gi|418951403|ref|ZP_13503501.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-160]
gi|359831193|gb|AEV79171.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M013]
gi|375373071|gb|EHS76774.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-160]
Length = 267
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|358465636|ref|ZP_09175546.1| tRNA pseudouridine synthase A [Fusobacterium sp. oral taxon 370
str. F0437]
gi|357069850|gb|EHI79718.1| tRNA pseudouridine synthase A [Fusobacterium sp. oral taxon 370
str. F0437]
Length = 251
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 103/233 (44%), Gaps = 46/233 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + L+ Y G R+YGF N + TV+ EI K L+ + K++ + GRTD+G
Sbjct: 8 RKNIKLEFRYDGSRYYGFQRQPN-KITVQGEIEKILK-----IVTKEDINLISAGRTDRG 61
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y S+I V++ Y +L R LPKDI ++
Sbjct: 62 VHANHQVSNFYTSSSI------------PVEK--------YKYLLTRALPKDIDILSVEE 101
Query: 211 APTDFSARFSCISREYKYFF-WREN-------------LNLSAMESAGKKFVGEHDFRNF 256
+F+AR REY Y W++N ++ +E+ F+G HDFRNF
Sbjct: 102 VSEEFNARHDAKMREYIYIISWKKNPFEARYCKFVKDKIDAEKLENIFSSFLGIHDFRNF 161
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
D + +T EI + + I IRGSAFL QVR MV
Sbjct: 162 RLSDCGS------KITIREIYSIEVKYFSENKLRICIRGSAFLKSQVRIMVGT 208
>gi|302336349|ref|YP_003801556.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084]
gi|301320189|gb|ADK68676.1| tRNA pseudouridine synthase A [Olsenella uli DSM 7084]
Length = 284
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 118/283 (41%), Gaps = 54/283 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
+++ Y G F GFA TV E+ ALE LL + + GRTD GV+++
Sbjct: 22 VRLGYRGAGFAGFAEQPGQR-TVAGELRTALET--LL---HRPVDLTCAGRTDAGVNALA 75
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
Q +++ + + GE +E + V L + P D+ V G A F
Sbjct: 76 QYVSLPV------------TRGELEREGR-----RLVSSLVALTPDDLSVRGLYKADVSF 118
Query: 216 SARFSCISREYKY---------------FFWRE---NLNLSAMESAGKKFVGEHDFRNFC 257
SARF + R Y+Y +W +L++ AM A +GEHDFR+FC
Sbjct: 119 SARFDALERGYRYRVACGSARPVLSWGHTWWLRSVADLDVDAMGEAASALLGEHDFRSFC 178
Query: 258 KMDAANVHNYKRHVTSFEISPCYISF---EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
K +A + T +S + G +L AI +RG+AFL + VR + L +G
Sbjct: 179 KASSAGLLEADGRSTCRRLSAVSVVRAREAGEELVAIDVRGNAFLHNMVRVIAGTLVEVG 238
Query: 315 QGLESIDVIESLLDTN----GIPRKPQYNMA------PEIPLV 347
+G + L + P P + + PE LV
Sbjct: 239 RGHRDASWVARALAAHDRSAAGPTAPAHGLTFEWVGYPEAALV 281
>gi|163857158|ref|YP_001631456.1| tRNA pseudouridine synthase A [Bordetella petrii DSM 12804]
gi|229557953|sp|A9IRL0.1|TRUA_BORPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|163260886|emb|CAP43188.1| pseudouridylate synthase I [Bordetella petrii]
Length = 268
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 105/251 (41%), Gaps = 49/251 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
+AL + Y G + G+ + + + TV+ + AL + A S + C GRTD GV
Sbjct: 4 MALGLAYDGSSWQGWQTQPHRQ-TVQDTLEAALAR----FAGIDGSLPTVCAGRTDTGVH 58
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ QV+ + +T E + E +VR +N LP I V P P
Sbjct: 59 AAMQVVHL-----------------DTRLERRAES---WVRGVNAFLPPSIAVQWAQPVP 98
Query: 213 TDFSARFSCISREYKYFFWR----------------ENLNLSAMESAGKKFVGEHDFRNF 256
DF ARFS SR Y Y WR + L++ AM A +GEHDF +F
Sbjct: 99 DDFHARFSARSRTYLYLLWRGRVRPPLWAGRAGWCFQPLDVQAMRQAASALLGEHDFSSF 158
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
H R + +I E +R +AFL H VR ++ L IGQG
Sbjct: 159 RSSQCQARHPV-RTLHRLDID------ERGPFLVFTLRANAFLHHMVRNLMGALLQIGQG 211
Query: 317 LESIDVIESLL 327
+ + + ++L
Sbjct: 212 RQPVAWMPAVL 222
>gi|28212149|ref|NP_783093.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
gi|38258761|sp|Q890R5.1|TRUA2_CLOTE RecName: Full=tRNA pseudouridine synthase A 2; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I 2; AltName: Full=tRNA-uridine
isomerase I 2
gi|28204593|gb|AAO37030.1| tRNA pseudouridine synthase A [Clostridium tetani E88]
Length = 248
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 119/279 (42%), Gaps = 72/279 (25%)
Query: 92 RYVALKVMYFGQRFYGFAS--DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
R V LKV Y G + G+ D N++ T++S I KA+E+ A K+E RTD
Sbjct: 3 RNVRLKVEYDGTNYSGWQKQKDKNIK-TIQSSIEKAIEE-----ATKEEVELIGSSRTDA 56
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV A+ +N K C+T + E+ + LNR LP+DI ++
Sbjct: 57 GVH------ALAYTANFKTCST--------IPGEK------FKHALNRFLPEDIVILESE 96
Query: 210 PAPTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDF 253
P +F +RF CI + Y Y + ++ L++++M A K +G HDF
Sbjct: 97 EVPMEFHSRFDCIGKTYVYKILNRPLFSPIQRNYIYHVKDELDINSMIEASKFLIGTHDF 156
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
F K N+ R +T+ I + N + I + G FL++ VR + L +
Sbjct: 157 NAF-KKSGGNLKTTVRTITNINI------LKSNDIVEIHVSGDGFLYNMVRIISGTLIEV 209
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCD 352
G RKP+ +I ++LQS D
Sbjct: 210 GLS----------------RRKPE-----DISIILQSKD 227
>gi|357419520|ref|YP_004932512.1| tRNA pseudouridine synthase A [Thermovirga lienii DSM 17291]
gi|355396986|gb|AER66415.1| tRNA pseudouridine synthase A [Thermovirga lienii DSM 17291]
Length = 250
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/280 (29%), Positives = 120/280 (42%), Gaps = 60/280 (21%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
A++V Y G+ F G+ N TV+ + ALE L+A + Y GRTDKGV ++
Sbjct: 5 AMQVSYKGKDFSGWQKQPNSR-TVQGVLESALE----LLAGHPVTVYG-AGRTDKGVHAL 58
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQV + + N + A E++ + +N LPKD+RV+
Sbjct: 59 GQVASF-------DLNRHWAP-------EKL------LLAVNAHLPKDVRVMRMRYVDNS 98
Query: 215 FSARFSCISREYKYFFW----------------RENLNLSAMESAGKKFVGEHDFRNFCK 258
F AR+S + REY YF W ++ ++S A K F G D+R FC+
Sbjct: 99 FHARYSALWREYVYFIWTGRVCFPHFSDYVWHRKQKWDISKARRACKLFWGTKDYRAFCR 158
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ R + E+ F L ++RG +FL + VR MV L I G +
Sbjct: 159 KSECPPSAF-RTIHKAEV------FSRGDLVWFRVRGDSFLTNMVRIMVGTLDYICTGKK 211
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358
ID +E LL G +P + P P DGL F
Sbjct: 212 DIDYLEELL--QGKAERP--DAGPTAPA-------DGLFF 240
>gi|339051056|ref|ZP_08647847.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC2047]
gi|330721742|gb|EGG99735.1| tRNA pseudouridine synthase A [gamma proteobacterium IMCC2047]
Length = 269
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 115/284 (40%), Gaps = 66/284 (23%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
VAL + Y G + G+ + + TV+ E+ AL K +AD + GRTD GV +
Sbjct: 11 VALGIEYHGSGYNGWQAQNHESITVQCELESALSK----IADAPVRVFC-AGRTDAGVHA 65
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ ++ + T NA +VR N LP IRV P
Sbjct: 66 TGQVVHF----DVLKPRTENA----------------WVRGTNTHLPDSIRVRWAKFVPE 105
Query: 214 DFSARFSCISREYKYF----------------FWRENLNLSAMESAGKKFVGEHDFRNF- 256
DF ARFS ++R Y Y F L++ M+ A VGEHDF ++
Sbjct: 106 DFHARFSAMARRYIYVIENTPVHSAIMNKHFSFEDRPLDVERMQLAANYLVGEHDFSSYR 165
Query: 257 ---CKMDAA--NVHNYK--RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
C+ +A VH+ K RH L AI I +AFL H VR + V
Sbjct: 166 TVRCQAKSAIKTVHHLKVERH---------------GSLIAIDIYANAFLHHMVRNVAGV 210
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
L M+G G + +LD R AP L L D+
Sbjct: 211 LMMVGMGKAEPVWAKQVLDARD--RTVGGVTAPPNGLYLVGVDY 252
>gi|182625331|ref|ZP_02953105.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
gi|177909489|gb|EDT71936.1| tRNA pseudouridine synthase A [Clostridium perfringens D str.
JGS1721]
Length = 248
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 107/244 (43%), Gaps = 51/244 (20%)
Query: 92 RYVALKVMYFGQRFYGFASD---GNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
R + + + Y G ++ G+ G+ TV+ ++ K L K +E CGRTD
Sbjct: 2 RNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTK-----MTSEEIQLIGCGRTD 56
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
GV + V +N K N+ M +E I+Y+ N LP+DIR+
Sbjct: 57 SGVHAKNYV------ANFK----TNSLM-------TLEQIIEYI---NEYLPEDIRITEI 96
Query: 209 SPAPTDFSARFSCISREYKY--------------FFW--RENLNLSAMESAGKKFVGEHD 252
A F ARF+ S+ Y+Y + W E L+L AME K +G HD
Sbjct: 97 REASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHD 156
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
F++F + + N R + S E E N + +IKI G+ FL + VR +V L
Sbjct: 157 FKSFTSLKSKNKSTL-RTINSIEFH------ENNNILSIKINGNGFLLNMVRIIVGTLVD 209
Query: 313 IGQG 316
+G G
Sbjct: 210 VGLG 213
>gi|229114082|ref|ZP_04243507.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-3]
gi|423381543|ref|ZP_17358826.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG1O-2]
gi|228669352|gb|EEL24769.1| tRNA pseudouridine synthase A 2 [Bacillus cereus Rock1-3]
gi|401629452|gb|EJS47269.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG1O-2]
Length = 245
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 123/283 (43%), Gaps = 56/283 (19%)
Query: 88 HHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRT 147
H++K L + Y G R+ G+ GN + T++ +I + + +V KE C RT
Sbjct: 2 HNYK----LTIQYDGARYKGWQRLGNNDNTIQGKIESVISE---MVG--KEIEIIGCSRT 52
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D GV ++ QV +N K E+ +E ++ + LN+ LP DI +
Sbjct: 53 DAGVHALNQV------ANFKS------------DEKLVEHKVK--KYLNQYLPNDISITS 92
Query: 208 WSPAPTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEH 251
P F AR++ ++ Y Y W E LN+ +M+ A K VG H
Sbjct: 93 VEEVPDRFHARYNSKAKTYLYKIWNEEHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSH 152
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
DF F + + R V + E+S E I++ G+ FL + VR +V L
Sbjct: 153 DFTAFSNAKSKK-KSMVREVYTLEVS------EEAGFVQIRVSGNGFLHNMVRKIVGALI 205
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
+G G + I ++L+ ++ Q N +A L L+S +F
Sbjct: 206 EVGLGQLDAEAIPNILEE---KQRNQINCLAEASGLYLESIEF 245
>gi|418599439|ref|ZP_13162922.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21343]
gi|374396755|gb|EHQ67980.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21343]
Length = 267
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 116/300 (38%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
I + LL++ RK AP L L+ D + D +D+++H + Q
Sbjct: 210 HEISDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLKDFD--NDIKIHRKKSLQ 265
>gi|407982528|ref|ZP_11163204.1| tRNA pseudouridine(38-40) synthase [Mycobacterium hassiacum DSM
44199]
gi|407376040|gb|EKF24980.1| tRNA pseudouridine(38-40) synthase [Mycobacterium hassiacum DSM
44199]
Length = 291
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 109/280 (38%), Gaps = 49/280 (17%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ TV + AL + GRTD GV + G
Sbjct: 17 LLIAYDGTDFAGWATQAGQR-TVAGVLDDALSTIF-----RTPVQLRAAGRTDTGVHATG 70
Query: 156 QVIAIYLRSNI---KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
QV + + ++ T GE VR L R LP D+RV+ + A
Sbjct: 71 QVAHVDVPADALHHAYPRTPRPGDGEFTP---------LVRRLARFLPGDVRVLDIARAA 121
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARFS + R Y Y W L++ AM + + +G HDF
Sbjct: 122 PGFDARFSALRRHYAYRLSTAPYGVEPQEARYVTAWPRPLDVEAMSAGARHLIGLHDFAA 181
Query: 256 FCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
FC+ A + + +R + +G+++ A + AF W VR ++ L ++
Sbjct: 182 FCRHREGATTIRDLQR---------LDFTRDGHRITA-HVSADAFCWQMVRSLIGALLVV 231
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G+ I LLD+ R ++ AP L L D+
Sbjct: 232 GEHRREPGWIARLLDSEH--RSTEFAAAPPQGLTLVGVDY 269
>gi|357390058|ref|YP_004904898.1| putative tRNA pseudouridine synthase A [Kitasatospora setae
KM-6054]
gi|311896534|dbj|BAJ28942.1| putative tRNA pseudouridine synthase A [Kitasatospora setae
KM-6054]
Length = 302
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 108/254 (42%), Gaps = 43/254 (16%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F G+A TV+ E+ AL R+++ ++ + GRTD GV +
Sbjct: 22 IRLDLAYHGAEFSGWARQRERR-TVQGELEDAL---RIVLRSEENFPLTVAGRTDAGVHA 77
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + L + A GE + +R L LP D+RV + AP
Sbjct: 78 RGQVAHVDLPDALW------AQHGEKL-----------LRRLAGRLPADVRVYRVAEAPH 120
Query: 214 DFSARFSCISREYKY----------------FFWREN-LNLSAMESAGKKFVGEHDFRNF 256
F ARF+ I R Y Y W + L+L M A + VGEHDF +
Sbjct: 121 GFDARFAAIWRRYAYRVADHPGGVDPLLRGHVLWHDRPLDLEKMNEAARLLVGEHDFAAY 180
Query: 257 CKM--DAANVHN-YKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
CK A + + H I P Y + EG+ L +R AF + VR +V + ++
Sbjct: 181 CKKREGATTIRTLLELHWERVPIDP-YAAQEGS-LAVATVRADAFCHNMVRALVGAMLLV 238
Query: 314 GQGLESIDVIESLL 327
G G ++ +L
Sbjct: 239 GDGHRPVEFPGKVL 252
>gi|420155408|ref|ZP_14662270.1| tRNA pseudouridine(38-40) synthase [Clostridium sp. MSTE9]
gi|394759186|gb|EJF41965.1| tRNA pseudouridine(38-40) synthase [Clostridium sp. MSTE9]
Length = 251
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 102/253 (40%), Gaps = 48/253 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + + Y G ++G+ N +V+ +A+ + V D K C RTD GV
Sbjct: 2 RNILFNISYDGSAYHGWQVQNNAI-SVQEVFQQAMLQVVGCVPDVKA-----CSRTDTGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ I+ + NI C +M N LP D+ V+
Sbjct: 56 HARQFCISAKIERNIP-CERLTPAM-------------------NHFLPPDVAVLSCREV 95
Query: 212 PTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRN 255
P DF AR+SC +EY Y W ++L + A ++G HDF +
Sbjct: 96 PMDFHARYSCRGKEYVYQIWNAPVRDPFLYGYALHYWYPMDLEKLNRAAAHYLGTHDFTS 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +DA + N R VT E +S EG+ + + + FL+H VR M L + Q
Sbjct: 156 FCTIDARDAGNMVRTVTKAE-----VSREGD-MVRFTVAANGFLYHMVRIMAGTLLRVAQ 209
Query: 316 GLESIDVIESLLD 328
G + I +L+
Sbjct: 210 GKFEPEQIPQILE 222
>gi|257064823|ref|YP_003144495.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476]
gi|256792476|gb|ACV23146.1| pseudouridylate synthase I [Slackia heliotrinireducens DSM 20476]
Length = 271
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 124/289 (42%), Gaps = 52/289 (17%)
Query: 89 HFKRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVADKKESHYSRCGR 146
+ R +A KV Y G F GFA + TV+ E+ AL R+L +++ + GR
Sbjct: 12 NLSRTLACKVAYDGAPFAGFARQAECDRVMTVQGELEHAL---RVLY--RRDVRTTCAGR 66
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TD GV ++GQV++ + + T + +R LN ++ + V
Sbjct: 67 TDAGVHAIGQVVSFDVTEDEFASRTPRS----------------LLRSLNALVDDHMSVS 110
Query: 207 GWSPAPTDFSARFSCISREYKY--------------FFWR---ENLNLSAMESAGKKFVG 249
P FSARF REY+Y W +L++ AM A +G
Sbjct: 111 VVEEKPFGFSARFDAKWREYRYRISTAAARPVLIMPLVWHLGGVDLDIDAMNRAAVHLIG 170
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFE----GNQLCAIKIRGSAFLWHQVRC 305
EHDF++FC +A R+V E+ FE G Q+ +++ G+AFL VR
Sbjct: 171 EHDFKSFCVAASAVGKPTCRNVMELEV------FEEEILGQQVATVRVVGNAFLHSMVRT 224
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+V L +G+G + + + +L+ R AP LV +++
Sbjct: 225 IVGTLVEVGRGRRNPEWVCDVLEARN--RGAAGQNAPAQGLVFWHVEYE 271
>gi|375093454|ref|ZP_09739719.1| pseudouridylate synthase I [Saccharomonospora marina XMU15]
gi|374654187|gb|EHR49020.1| pseudouridylate synthase I [Saccharomonospora marina XMU15]
Length = 295
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 111/279 (39%), Gaps = 40/279 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G F G+A TV+ I +AL K + GRTD GV +
Sbjct: 16 IRLGLAYDGTDFSGWAKQPRQR-TVQGVIEEALAKQ--PPGEAMVGPMVVAGRTDAGVHA 72
Query: 154 VGQVIAIYLRSNIKECNTNNASM-GETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
QV +++ ++ G V E+ + D NR+LP D+RV+ AP
Sbjct: 73 TAQV------AHVDASRFAGKTLRGLAVDEQGVPDLARLRHRWNRILPPDVRVLAADVAP 126
Query: 213 TDFSARFSCISREYKY-----------------FFWRENLNLSAMESAGKKFVGEHDFRN 255
T F ARFS + R Y Y W L + M A +G HDF
Sbjct: 127 TGFDARFSAMRRHYLYKVSDAPWGVDPLRRRDTLAWPRALAVETMNKAAHYLIGLHDFAA 186
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FCK RH+ + + +++ AI + AF VR +V VL ++G
Sbjct: 187 FCKQREGA--TTIRHLQRL----SWRRVDEHEIHAI-VSADAFCHSMVRSLVGVLLLVGD 239
Query: 316 GLESI-DVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G S+ V ESL R+ +AP L L D+
Sbjct: 240 GRRSVASVAESLRS-----RQRDSAVAPPHGLTLIGVDY 273
>gi|330829261|ref|YP_004392213.1| tRNA pseudouridine synthase A [Aeromonas veronii B565]
gi|423210045|ref|ZP_17196599.1| tRNA pseudouridine synthase A [Aeromonas veronii AER397]
gi|328804397|gb|AEB49596.1| tRNA pseudouridine synthase A [Aeromonas veronii B565]
gi|404615933|gb|EKB12891.1| tRNA pseudouridine synthase A [Aeromonas veronii AER397]
Length = 269
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/251 (29%), Positives = 112/251 (44%), Gaps = 51/251 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
+AL + Y G R++G+ + +V++E+ AL + +A+ S +C GRTD GV
Sbjct: 3 IALGIEYDGSRYFGWQRQREVI-SVQAELETALSR----IANHPVS--IQCAGRTDAGVH 55
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQVI + N A T+ LN LP DI V
Sbjct: 56 ATGQVIHF-------DTEANRAEGAWTLG-------------LNSNLPPDIAVRWVKQVD 95
Query: 213 TDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNF 256
F ARFS +R Y+Y + N +N M AG+ +GEHDF F
Sbjct: 96 ESFHARFSATARRYRYVIYNHNYRPAILGSGVSHYHETINAELMHQAGQSLLGEHDFSTF 155
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ A + R+VT C +S +G + + IR +AFL H VR + L ++GQG
Sbjct: 156 -RAVACQSNTPWRNVTHL----C-VSRQGPYIV-LDIRANAFLHHMVRNITGSLLLVGQG 208
Query: 317 LESIDVIESLL 327
L+ ++ I +L
Sbjct: 209 LKPVEWIAEVL 219
>gi|302553571|ref|ZP_07305913.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM
40736]
gi|302471189|gb|EFL34282.1| tRNA pseudouridine synthase A [Streptomyces viridochromogenes DSM
40736]
Length = 284
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 102/247 (41%), Gaps = 48/247 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G F G+A TV+ EI AL R + K+ + GRTD GV +
Sbjct: 12 VRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDAL---RTVTRSKETYELTVAGRTDAGVHA 68
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + L +E E ++ L LP+D+RV AP+
Sbjct: 69 RGQVAHVDL-----------------PREVWAEHHQKLLKRLAGRLPRDVRVWALREAPS 111
Query: 214 DFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFRNF 256
F+ARFS + R Y Y W + L++ AM A ++ +GEHDF +
Sbjct: 112 GFNARFSAVWRRYAYRVTDNPGGVDPLLRNHVLWHDWPLDVDAMNEAARRLLGEHDFAAY 171
Query: 257 CKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
CK A + + E+S + E + A +R AF + VR ++ L +G
Sbjct: 172 CKKREGATTIRTLQ------ELS--LVKGEDGIITAT-VRADAFCHNMVRSLIGALLFVG 222
Query: 315 QGLESID 321
G D
Sbjct: 223 DGHRPPD 229
>gi|403292192|ref|XP_003937138.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 400
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/356 (24%), Positives = 150/356 (42%), Gaps = 72/356 (20%)
Query: 28 ADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEEN----RKTESGGCKTGKKKVKEKMS 83
A NA+L S R + + + G G + E+ +K +SGG E+
Sbjct: 2 AGNAELPSPAGSARPQ--DRRSRSGRAGGVRVWEDGEHPAKKLKSGG--------DEERR 51
Query: 84 GTLNHHFKRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKK 137
G L KR V L + Y G+ ++G + G+ + T+E ++ AL ++ + D +
Sbjct: 52 GKLP---KRKVVLLMAYSGKGYHGMQRNVGSSQFKTIEDDLVSALVRSGCIPENHGEDMR 108
Query: 138 ESHYSRCGRTDKGVSSVGQVIA--IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVL 195
+ + RC RTDKGVS+ GQV++ ++L I E +
Sbjct: 109 KMSFQRCARTDKGVSAAGQVVSLKVWLIDGILEK-------------------------I 143
Query: 196 NRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF------------WRENLNLSA--ME 241
N LP IR++G F+++ C +R Y Y E LSA ++
Sbjct: 144 NSHLPSHIRILGLKRVTGGFNSKNKCDARTYCYLLPTFAFAHKDRDVQDETYRLSAETLQ 203
Query: 242 SAGK---KFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAF 298
+ ++ G H+F NF + +R++ ++ EG + I+++G +F
Sbjct: 204 QVNRLLARYKGTHNFHNFTSQKGPQEPSARRYILDMYCEEPFVR-EGLEFAVIRVKGQSF 262
Query: 299 LWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ HQ+R MV ++ I +G V+E T K AP + LVL+ F+
Sbjct: 263 MMHQIRKMVGLVVAIVKGYAPESVLERSWGTE----KVDVPKAPGLGLVLERVHFE 314
>gi|386712499|ref|YP_006178821.1| tRNA pseudouridine synthase A [Halobacillus halophilus DSM 2266]
gi|384072054|emb|CCG43544.1| tRNA pseudouridine synthase A [Halobacillus halophilus DSM 2266]
Length = 247
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 49/273 (17%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G + G+ N + TV+ ++ K L K + ++ GRTD GV ++GQV
Sbjct: 8 IQYDGTNYAGYQVQLNGK-TVQEKLEKVLTK----IHKGRKIKVIASGRTDSGVHAIGQV 62
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
I + + +K N + R L +LP DI V P +DF A
Sbjct: 63 I--HFDTELKLPMEN------------------WKRALATMLPADITVTKAEPVSSDFHA 102
Query: 218 RFSCISREYKYFFW----------------RENLNLSAMESAGKKFVGEHDFRNFCKMDA 261
R+ +EY+YF W R+ L++ AM+ A + GEH+F +FC
Sbjct: 103 RYDTTGKEYRYFIWNSKEPNIFKRHYYYHIRKELDVPAMKEACRYIEGEHNFTSFCS-PK 161
Query: 262 ANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESID 321
++V K I + +G +L + +GS FL++ VR +V L +G
Sbjct: 162 SDVKGSKVRT----IHQASVVQKGEELI-FQFKGSGFLYNMVRIIVGTLLEVGHHEREPA 216
Query: 322 VIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
I S+L+ R+ N AP L L D++
Sbjct: 217 DIPSILEKEN--REFAGNTAPPHGLFLWKVDYE 247
>gi|169630847|ref|YP_001704496.1| tRNA pseudouridine synthase A [Mycobacterium abscessus ATCC 19977]
gi|420911403|ref|ZP_15374715.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0125-R]
gi|420928684|ref|ZP_15391964.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-1108]
gi|420979026|ref|ZP_15442203.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0212]
gi|420984409|ref|ZP_15447576.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0728-R]
gi|421014460|ref|ZP_15477536.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0122-R]
gi|421030355|ref|ZP_15493386.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0930-R]
gi|421035707|ref|ZP_15498725.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0930-S]
gi|169242814|emb|CAM63842.1| tRNA pseudouridine synthase A [Mycobacterium abscessus]
gi|392113397|gb|EIU39166.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0125-R]
gi|392129802|gb|EIU55549.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-1108]
gi|392163304|gb|EIU88993.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0212]
gi|392169405|gb|EIU95083.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0728-R]
gi|392198737|gb|EIV24348.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0122-R]
gi|392223575|gb|EIV49097.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0930-R]
gi|392224202|gb|EIV49723.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0930-S]
Length = 294
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 112/284 (39%), Gaps = 57/284 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ N TV + +A +V D + + + GRTD GV + G
Sbjct: 20 LDIAYDGTDFAGWATQVNQR-TVAGVLGEAFTT---IVGDSVQLYAA--GRTDAGVHATG 73
Query: 156 QVIAI--------YLRSNIKECNTNNASMGETVQEEQIEDEID-YVRVLNRVLPKDIRVI 206
QV + LR + E D VR L+R LP D+RV+
Sbjct: 74 QVAHLDVPVACLPGLRGRYRPAGAP---------------EFDRLVRRLSRFLPSDVRVL 118
Query: 207 GWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVG 249
S AP F ARFS + R Y+Y W L++ AM A + +G
Sbjct: 119 DISRAPAHFDARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLG 178
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
DF FC+ + + T E+ +G +L A + AF W VR +V
Sbjct: 179 LRDFAAFCR-------HREGATTIRELQRFDWGVDGQRLTAY-VSADAFCWSMVRSLVGA 230
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ +G+G + LL N R + AP L L D+
Sbjct: 231 VLAVGEGRRPVQWCVDLL--NKERRSSDFAAAPARGLTLVGVDY 272
>gi|418471395|ref|ZP_13041218.1| tRNA pseudouridine synthase A [Streptomyces coelicoflavus ZG0656]
gi|371548040|gb|EHN76378.1| tRNA pseudouridine synthase A [Streptomyces coelicoflavus ZG0656]
Length = 284
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 101/251 (40%), Gaps = 44/251 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G+ F G+A TV+ EI AL R + + + GRTD GV +
Sbjct: 12 VRLDLSYDGREFSGWAKQAGGRRTVQGEIEDAL---RTVTRSPETYELTVAGRTDAGVHA 68
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + L +E E + ++ L LP+D+RV AP+
Sbjct: 69 RGQVAHVDL-----------------PREVWAEHHVKLLKRLAGRLPRDVRVWALREAPS 111
Query: 214 DFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFRNF 256
F+ARFS + R Y Y W + L++ AM A + +GEHDF +
Sbjct: 112 GFNARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARGLLGEHDFAAY 171
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
CK + T + + + + +R AF + VR ++ L +G G
Sbjct: 172 CK-------KREGATTIRTLQELSLVRGEDGIVTATVRADAFCHNMVRSLIGALLFVGDG 224
Query: 317 LESIDVIESLL 327
+ D +L
Sbjct: 225 HRTPDWPAKVL 235
>gi|229165426|ref|ZP_04293210.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH621]
gi|228618024|gb|EEK75065.1| tRNA pseudouridine synthase A 2 [Bacillus cereus AH621]
Length = 268
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 52/275 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ GN + T++ +I + + +V KE C RTD GV ++
Sbjct: 29 LTIQYDGARYKGWQRLGNNDNTIQGKIESVISE---MVG--KEIEIIGCSRTDAGVHALN 83
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N E + E +++ + LN+ LP DI + P F
Sbjct: 84 QVA--------------NFQSDEKLVEHKVK------KYLNQYLPNDISITSVEEVPDRF 123
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E LN+ +M+ A K VG HDF F
Sbjct: 124 HARYNSKAKTYLYKIWNEEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNA 183
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + R V + ++S E + I++ G+ FL + VR +V L +G G
Sbjct: 184 KSKK-KSMVREVYTLDVS------EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLE 236
Query: 320 IDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
D I ++L+ ++ Q N +A L L++ +F
Sbjct: 237 ADAIPNILEE---KQRNQINCLAEASGLYLENVEF 268
>gi|419717695|ref|ZP_14245070.1| tRNA pseudouridine synthase A [Mycobacterium abscessus M94]
gi|382937576|gb|EIC61925.1| tRNA pseudouridine synthase A [Mycobacterium abscessus M94]
Length = 294
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 112/284 (39%), Gaps = 57/284 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ N TV + +A +V D + + + GRTD GV + G
Sbjct: 20 LDIAYDGTDFAGWATQVNQR-TVAGVLGEAFTT---IVGDPVQLYAA--GRTDAGVHATG 73
Query: 156 QVIAI--------YLRSNIKECNTNNASMGETVQEEQIEDEID-YVRVLNRVLPKDIRVI 206
QV + LR + E D VR L+R LP D+RV+
Sbjct: 74 QVAHLDVPVACLPGLRGRYRPAGAP---------------EFDRLVRRLSRFLPSDVRVL 118
Query: 207 GWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVG 249
S AP F ARFS + R Y+Y W L++ AM A + +G
Sbjct: 119 DISRAPAHFDARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLG 178
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
DF FC+ + + T E+ +G +L A + AF W VR +V
Sbjct: 179 LRDFAAFCR-------HREGATTIRELQRFDWGVDGQRLTAY-VSADAFCWSMVRSLVGA 230
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ +G+G + LL N R + AP L L D+
Sbjct: 231 VLAVGEGRRPVQWCVDLL--NKERRSSDFAAAPARGLTLVGVDY 272
>gi|451947437|ref|YP_007468032.1| pseudouridylate synthase I [Desulfocapsa sulfexigens DSM 10523]
gi|451906785|gb|AGF78379.1| pseudouridylate synthase I [Desulfocapsa sulfexigens DSM 10523]
Length = 261
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/287 (27%), Positives = 118/287 (41%), Gaps = 64/287 (22%)
Query: 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
+RY L + Y G F G+ N+ TV+ ++ K + V + CGRTD
Sbjct: 7 LRRY-RLILEYDGTNFSGWQKQVNVR-TVQGDVLKGAAR----VFGEVPMDLQGCGRTDS 60
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV ++ V + + A MG + R LN LPKDI V
Sbjct: 61 GVHALEYVAHLEV----------AADMGPH----------EVARKLNETLPKDIAVRSVE 100
Query: 210 PAPTDFSARFSCISREY-------------KYFFW-RENLNLSAMESAGKKFVGEHDFRN 255
A F AR +CI+R Y +Y +W + +L+L AM+ AG G HDF
Sbjct: 101 AAGARFHARHNCIARSYVYQIRTEKSAFGKRYDWWVQADLDLPAMQHAGSLMTGMHDFAA 160
Query: 256 FC------KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
F K +HN + F+ ++ I++ GS FLWH VR MV +
Sbjct: 161 FAEKKELKKSTRVLIHNVE-------------VFKEKEILKIRVVGSHFLWHMVRRMVGI 207
Query: 310 LFMIG-QGLESIDVIESLLD-TNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ +G L DV L D +N + P ++ AP L + +D
Sbjct: 208 MVEVGCHRLTEEDVQNMLEDHSNAL---PSHHTAPSAGLFFEKAFYD 251
>gi|420917860|ref|ZP_15381163.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0125-S]
gi|420923025|ref|ZP_15386321.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0728-S]
gi|420968293|ref|ZP_15431497.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0810-R]
gi|421008867|ref|ZP_15471977.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0119-R]
gi|421019324|ref|ZP_15482381.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0122-S]
gi|421024626|ref|ZP_15487670.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0731]
gi|392110751|gb|EIU36521.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0125-S]
gi|392127678|gb|EIU53428.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 6G-0728-S]
gi|392197015|gb|EIV22631.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0119-R]
gi|392207954|gb|EIV33531.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0122-S]
gi|392211423|gb|EIV36989.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0731]
gi|392250800|gb|EIV76274.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 3A-0810-R]
Length = 277
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 112/284 (39%), Gaps = 57/284 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ N TV + +A +V D + + + GRTD GV + G
Sbjct: 3 LDIAYDGTDFAGWATQVNQR-TVAGVLGEAFTT---IVGDSVQLYAA--GRTDAGVHATG 56
Query: 156 QVIAI--------YLRSNIKECNTNNASMGETVQEEQIEDEID-YVRVLNRVLPKDIRVI 206
QV + LR + E D VR L+R LP D+RV+
Sbjct: 57 QVAHLDVPVACLPGLRGRYRPAGAP---------------EFDRLVRRLSRFLPSDVRVL 101
Query: 207 GWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVG 249
S AP F ARFS + R Y+Y W L++ AM A + +G
Sbjct: 102 DISRAPAHFDARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLG 161
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
DF FC+ + + T E+ +G +L A + AF W VR +V
Sbjct: 162 LRDFAAFCR-------HREGATTIRELQRFDWGVDGQRLTAY-VSADAFCWSMVRSLVGA 213
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ +G+G + LL N R + AP L L D+
Sbjct: 214 VLAVGEGRRPVQWCVDLL--NKERRSSDFAAAPARGLTLVGVDY 255
>gi|425737487|ref|ZP_18855759.1| tRNA pseudouridine synthase A [Staphylococcus massiliensis S46]
gi|425481741|gb|EKU48899.1| tRNA pseudouridine synthase A [Staphylococcus massiliensis S46]
Length = 267
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 118/303 (38%), Gaps = 59/303 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V + + Y G + GF N T++ + K L++ K+ RTD+GV +
Sbjct: 3 VLVNISYHGGGYLGFQIQ-NEGRTIQQQFEKILKRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI E A +N LP DI V +
Sbjct: 57 IEQYFHFDTPLNISEEKWQYA--------------------MNSALPHDIHVNDVTIISD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F +E+L+L AM+ A K F+G HDF FC
Sbjct: 97 DFHCRYDCVGKMYRYRTYHQDHINPFQYGLKTFVKEDLDLKAMQEAAKHFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + +R + EI E + I GS FL++ VR +VA L +G+G
Sbjct: 157 SQKTEVV-SKERTIYRSEI------IETEEGFDYVIAGSGFLYNMVRVIVAFLIEVGKGK 209
Query: 318 ESIDVIESLL---DTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRN 374
+ + LL D N +P + AP L L+ D G D+ +H +
Sbjct: 210 RHPNDVNRLLELKDRNAVP-----HTAPPEGLYLEKIYLSDEALIQ--DYGEDIEIHYKK 262
Query: 375 ECQ 377
Q
Sbjct: 263 STQ 265
>gi|308814270|ref|XP_003084440.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus
tauri]
gi|116056325|emb|CAL56708.1| TRUA1_PARUW tRNA pseudouridine synthase A 1 (ISS) [Ostreococcus
tauri]
Length = 705
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 115/284 (40%), Gaps = 53/284 (18%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
A+ + Y G + GF G +V+ E+ + L TRL + GRTD GV +
Sbjct: 18 AMTISYDGTNYKGFQRQGADVASVQRELERCL--TRLTGEGRDALRLGGSGRTDGGVHAR 75
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG-WSPAPT 213
GQV+ Y + + ED V+ +N +LP+D+R W P P
Sbjct: 76 GQVVHFYSEKDWRSA----------------EDFARCVKAMNGMLPRDVRCERFWRPHPA 119
Query: 214 DFSARFSCISREYKYFF------------------WRENLNLSAMESAGKKFVGEHDFRN 255
F ARF + Y Y+ WR ++ A+ A + FVG DFR
Sbjct: 120 -FHARFHATRKTYAYYVDARSPHDVFARAYACQCGWRA-CDVDALRRACQYFVGTRDFRA 177
Query: 256 FC-----KMDAANVHNYKRHVTSFEISPCYISFE-GNQLCAIKIRGSAFLWHQVRCMVAV 309
F K + N R + F++ FE + L ++ G FL+ QVR MV
Sbjct: 178 FANTSRDKPTSDEDLNTTRTIFRFDV------FEQADGLIRLECEGDGFLYRQVRNMVGA 231
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
++ G E + I LL + R P AP L LQS ++
Sbjct: 232 ALVVASGREKPEWILDLLASGDRRRVP--TAAPARGLFLQSVEY 273
>gi|386756729|ref|YP_006229945.1| tRNA pseudouridine synthase A [Bacillus sp. JS]
gi|384930011|gb|AFI26689.1| tRNA pseudouridine synthase A [Bacillus sp. JS]
Length = 247
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 115/276 (41%), Gaps = 55/276 (19%)
Query: 98 VMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
+ Y G F G+ ++P TV+ E+ KAL +L K+ GRTD GV +
Sbjct: 7 ISYDGHLFNGY----QVQPGKRTVQDELEKALA---VLHKSKERIPVVSSGRTDSGVHAA 59
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQVI +T A E + LN +LP DI V
Sbjct: 60 GQVI---------HFDTPLAIPAER-----------WPYALNALLPDDIAVKQAEITDDG 99
Query: 215 FSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCK 258
F ARFS + +EY+YF + E LN+ M A K +G HDF +FC
Sbjct: 100 FHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFC- 158
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
AA + T +E+ E + ++I GS FL++ VR +V L G G
Sbjct: 159 --AAKTEVQDKVRTIYELDWT----ETDDGLQMRITGSGFLYNMVRIIVGTLLDAGIGKI 212
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
S D ++S+L+ R+ AP L L + +D
Sbjct: 213 SPDDVKSMLEAKD--REAAGRTAPGHGLYLWNVYYD 246
>gi|417903640|ref|ZP_12547478.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21269]
gi|341849286|gb|EGS90432.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21269]
Length = 267
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTDLNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|110803601|ref|YP_698382.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
gi|110684102|gb|ABG87472.1| tRNA pseudouridine synthase A [Clostridium perfringens SM101]
Length = 248
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 103/244 (42%), Gaps = 51/244 (20%)
Query: 92 RYVALKVMYFGQRFYGFASD---GNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
R + + + Y G ++ G+ G+ TV+ ++ K L K +E CGRTD
Sbjct: 2 RNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTK-----MTSEEIQLIGCGRTD 56
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
GV + V N + EQI ++ +N LP+DIRV
Sbjct: 57 SGVHAKNYVA--------------NFKTNSLMTLEQI------IKYINEYLPEDIRVKEI 96
Query: 209 SPAPTDFSARFSCISREYKY--------------FFW--RENLNLSAMESAGKKFVGEHD 252
A F ARF+ S+ Y+Y + W E L+L AME K +G HD
Sbjct: 97 REASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHD 156
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
F++F + + N R + S E E N + +IKI G+ FL + VR +V L
Sbjct: 157 FKSFTSLKSKNKSTL-RTINSIEFH------ENNNILSIKINGNGFLLNMVRIIVGTLVD 209
Query: 313 IGQG 316
+G G
Sbjct: 210 VGLG 213
>gi|408680127|ref|YP_006879954.1| tRNA pseudouridine synthase A [Streptomyces venezuelae ATCC 10712]
gi|328884456|emb|CCA57695.1| tRNA pseudouridine synthase A [Streptomyces venezuelae ATCC 10712]
Length = 285
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 102/257 (39%), Gaps = 45/257 (17%)
Query: 82 MSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY 141
MS + F R V L + Y G+ F G+A + TV+ +I AL R + K+
Sbjct: 1 MSDDVQDGFVR-VRLDLSYDGKDFSGWAKQAQGQRTVQGDIEDAL---RTVTRSKETYEL 56
Query: 142 SRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPK 201
+ GRTD GV + GQV + L + + E +R L L
Sbjct: 57 TVAGRTDSGVHARGQVAHVDLPAEL-----------------WAEHRDKLLRRLAGRLSH 99
Query: 202 DIRVIGWSPAPTDFSARFSCISREYKY----------------FFWRE-NLNLSAMESAG 244
D+RV + AP+ F+ARFS I R Y Y W + L++ AM A
Sbjct: 100 DVRVWSLAEAPSGFNARFSAIWRRYAYRVTDNPGGVDPLLRGHVLWHDWALDMDAMNEAA 159
Query: 245 KKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVR 304
VGEHDF +CK +E P + + ++ AF + VR
Sbjct: 160 AALVGEHDFAAYCKRREGATTIRTLQELRWERRP-------DGVLEATVKADAFCHNMVR 212
Query: 305 CMVAVLFMIGQGLESID 321
+V L +G G +D
Sbjct: 213 SLVGALLFVGDGHRPVD 229
>gi|262066902|ref|ZP_06026514.1| tRNA pseudouridine synthase A [Fusobacterium periodonticum ATCC
33693]
gi|291379371|gb|EFE86889.1| tRNA pseudouridine synthase A [Fusobacterium periodonticum ATCC
33693]
Length = 248
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 101/232 (43%), Gaps = 46/232 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + ++ Y G R+YGF N + TV+ EI K L+ + K++ + GRTD+G
Sbjct: 5 RKNIKIEFRYDGSRYYGFQRQPN-KITVQGEIEKILK-----IVTKEDINLISAGRTDRG 58
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y S+I +G+ Y +L R LPKDI ++
Sbjct: 59 VHANHQVSNFYTSSSI--------PVGK------------YKYLLTRALPKDIDILSVEE 98
Query: 211 APTDFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNF 256
DF+AR REY Y F ++ ++ +E F+G HDF+NF
Sbjct: 99 VNEDFNARHDAKMREYVYIISWDKNPFETRYCKFVKDKIDAEKLERIFSSFLGVHDFKNF 158
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVA 308
D + VT EI + + I IRGSAFL QVR MV
Sbjct: 159 RLSDCVS------KVTVREIYSIDVKYFSENKLKIFIRGSAFLKSQVRIMVG 204
>gi|359419931|ref|ZP_09211875.1| tRNA pseudouridine synthase A [Gordonia araii NBRC 100433]
gi|358244035|dbj|GAB09944.1| tRNA pseudouridine synthase A [Gordonia araii NBRC 100433]
Length = 324
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 108/273 (39%), Gaps = 60/273 (21%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKAL-----EKTRLLVADKKESHYSRCGRTDKG 150
L V Y G F+G+A+ TVE + AL E L VA GRTD G
Sbjct: 18 LDVGYDGTDFHGWAAQPGRR-TVEGVLTDALGTVLRESVNLTVA----------GRTDAG 66
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQV ++ + S+ D VR L ++LP D+RV
Sbjct: 67 VHATGQVAHF----DVPRAALDTRSI--------HGDPSTLVRRLAKMLPDDVRVKAVED 114
Query: 211 APTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDF 253
TDF ARF+ + R Y Y W ++L + +A VG HDF
Sbjct: 115 VSTDFDARFAALRRHYVYRLSDASWGAEPVAARTTADWTRPIDLELLNAASATLVGLHDF 174
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
FC+ + R + +FE +G+ + ++ AF W VR +V + +
Sbjct: 175 AAFCRFRPGS--TTIRDLQAFE-----WRRDGDGVLVGRVTADAFCWSMVRSLVGAVATV 227
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPL 346
G+G +D LL Q + + E+P+
Sbjct: 228 GEGRRDVDWCAGLL--------AQTSRSAEVPV 252
>gi|139438880|ref|ZP_01772340.1| Hypothetical protein COLAER_01344 [Collinsella aerofaciens ATCC
25986]
gi|133775591|gb|EBA39411.1| tRNA pseudouridine synthase A [Collinsella aerofaciens ATCC 25986]
Length = 274
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/285 (27%), Positives = 119/285 (41%), Gaps = 43/285 (15%)
Query: 86 LNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCG 145
L + +V Y G + GFA + TV E+ +A+E LL ++ + G
Sbjct: 9 LTPELDATLVFRVAYDGSSYSGFAEQPG-QATVAGELRRAIET--LL---RRPIDLTCAG 62
Query: 146 RTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRV 205
RTD GV +V Q I++ +A + T + ++R ++ +LPKDI +
Sbjct: 63 RTDAGVHAVAQYISV---------PVTDAELALTRRR--------WLRAMDALLPKDIAI 105
Query: 206 IGWSPAPTDFSARFSCISREYKY---------------FFW-RENLNLSAMESAGKKFVG 249
A FSARF SR Y Y +W R L++ AM +A +G
Sbjct: 106 NEVYRARKGFSARFDARSRTYTYRIADRDARPVLSRGAVWWHRYPLDVEAMSAACPALLG 165
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
E DF++FCK+ +A R V E ++F G + I G+AFL VR +V
Sbjct: 166 EQDFKSFCKVASAVGKPTHRCVMRAEFG-HEVAF-GEDILTFTIEGNAFLHSMVRTIVGT 223
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
L IG + + ++D R AP L D+D
Sbjct: 224 LVEIGMHRRKPEWMREVID--ACDRTAAGPTAPACGLTFMGVDYD 266
>gi|110800554|ref|YP_695694.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
gi|110675201|gb|ABG84188.1| tRNA pseudouridine synthase A [Clostridium perfringens ATCC 13124]
Length = 248
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 107/244 (43%), Gaps = 51/244 (20%)
Query: 92 RYVALKVMYFGQRFYGFASD---GNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
R + + + Y G ++ G+ G+ TV+ ++ K L K +E CGRTD
Sbjct: 2 RNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTK-----MTSEEIQLIGCGRTD 56
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
GV + V +N K N+ M +E I+Y+ N LP+DIRV
Sbjct: 57 SGVHAKNYV------ANFK----TNSLM-------TLEQIIEYI---NEYLPEDIRVKEI 96
Query: 209 SPAPTDFSARFSCISREYKY--------------FFW--RENLNLSAMESAGKKFVGEHD 252
A F ARF+ S+ Y+Y + W E L+L AME K +G HD
Sbjct: 97 REASERFHARFNVKSKTYEYTIDNNKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHD 156
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
F++F + + N R + S E E N + +IKI G+ FL + VR +V L
Sbjct: 157 FKSFTSLKSKNKSTL-RTINSIEFH------ENNNILSIKINGNGFLLNMVRIIVGTLVD 209
Query: 313 IGQG 316
+G G
Sbjct: 210 VGLG 213
>gi|308172039|ref|YP_003918744.1| pseudouridylate synthase I [Bacillus amyloliquefaciens DSM 7]
gi|384157761|ref|YP_005539834.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens TA208]
gi|384162549|ref|YP_005543928.1| pseudouridylate synthase I [Bacillus amyloliquefaciens LL3]
gi|384166770|ref|YP_005548148.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens XH7]
gi|307604903|emb|CBI41274.1| pseudouridylate synthase I [Bacillus amyloliquefaciens DSM 7]
gi|328551849|gb|AEB22341.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens TA208]
gi|328910104|gb|AEB61700.1| pseudouridylate synthase I [Bacillus amyloliquefaciens LL3]
gi|341826049|gb|AEK87300.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens XH7]
Length = 247
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 118/276 (42%), Gaps = 55/276 (19%)
Query: 98 VMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
+ Y G F G+ ++P TV+SE+ KAL + D + YS GRTD V +
Sbjct: 7 IAYDGHLFNGY----QVQPGKRTVQSELEKAL--AVIHKTDGRVPVYS-SGRTDSDVHAA 59
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQVI + ++ E+ + LN +LP DI V A
Sbjct: 60 GQVI--------------HFDTPLSIPAEK------WPFALNALLPDDIAVKTAEIADDG 99
Query: 215 FSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCK 258
F ARFS + +EY+YF + E LN+ M A + +G HDF +FC
Sbjct: 100 FHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHFAYQLNVQKMREASRHLIGTHDFTSFCA 159
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+D A V + R + E + E ++I G+ FL++ VR + L G G
Sbjct: 160 VDTA-VQDKVRTIYELEWT------ETGDGLQMRITGNGFLYNMVRIIAGTLLDTGAGKF 212
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
S D ++++L+ R+ AP L L S +D
Sbjct: 213 SPDDVKAMLEAKD--REAAGRTAPGHGLYLWSVCYD 246
>gi|453051846|gb|EME99342.1| tRNA pseudouridine synthase A [Streptomyces mobaraensis NBRC 13819
= DSM 40847]
Length = 286
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 103/247 (41%), Gaps = 48/247 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G+ F G+A + TV+ E+ A+ R + K + GRTD GV +
Sbjct: 12 VRLDLSYDGRDFSGWAKQREGQRTVQGELEDAI---RTVTRSKVTYELTVAGRTDAGVHA 68
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + L + E E +R L LP D+RV + AP
Sbjct: 69 RGQVAHVDLPVEV-----------------WAEHEDKLLRRLAGRLPHDVRVWRVAEAPA 111
Query: 214 DFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFRNF 256
F+ARFS I R Y Y W + L++ AM +A ++ VGEHDF +
Sbjct: 112 GFNARFSAIWRRYAYRVVDHPAGVDPLLRGHVLWHDWPLDVDAMNAAAERLVGEHDFAAY 171
Query: 257 CKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
CK A + +R +E + + + ++ AF + VR +V L +G
Sbjct: 172 CKKREGATTIRTLQR--LDWE-------RDADGVITATVKADAFCHNMVRSLVGALLFVG 222
Query: 315 QGLESID 321
G +D
Sbjct: 223 DGHRPVD 229
>gi|453366326|dbj|GAC78101.1| tRNA pseudouridine synthase A [Gordonia malaquae NBRC 108250]
Length = 277
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 114/280 (40%), Gaps = 54/280 (19%)
Query: 96 LKVMYFGQRFYGFASDG---NMEPTVESEIFKALEK-TRLLVADKKESHYSRCGRTDKGV 151
+++ Y G F G+A+ ++ T+E+ + L RL VA GRTD GV
Sbjct: 1 MRIGYDGTDFSGWATQPGRRTVQETIETTLSTVLRSPVRLTVA----------GRTDAGV 50
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIE-DEIDYVRVLNRVLPKDIRVIGWSP 210
+ GQV+ C+ S+ Q I+ D VR L ++LP D+RV
Sbjct: 51 HASGQVV---------HCDVPVDSL----QSRSIDGDPSRLVRRLAKMLPDDVRVKAVEQ 97
Query: 211 APTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDF 253
TDF ARF+ ++R Y+Y W +L++ M +A VG +DF
Sbjct: 98 VSTDFDARFAALARTYEYRLADALWGAEPTSARMTADWPRHLDVDLMNAASASLVGLNDF 157
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
FC+ + T E+ + + ++R AF W VR +V + ++
Sbjct: 158 AAFCRFREGS-------TTIRELQEFSWRRDDAGVLVARVRADAFCWSMVRSLVGAVAVV 210
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G G +D LL R Q +A L L D+
Sbjct: 211 GDGRRDLDWCVGLLAER--ERSAQVPVAQARGLCLMRVDY 248
>gi|300782641|ref|YP_003762932.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei U32]
gi|384145858|ref|YP_005528674.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei S699]
gi|399534527|ref|YP_006547189.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei S699]
gi|299792155|gb|ADJ42530.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei U32]
gi|340524012|gb|AEK39217.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei S699]
gi|398315297|gb|AFO74244.1| tRNA pseudouridine synthase A [Amycolatopsis mediterranei S699]
Length = 238
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 79/191 (41%), Gaps = 31/191 (16%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGET-VQEEQIEDEIDYVRVLNRVLPKD 202
GRTD GV + GQV+ ++ S G V E I D NR+LP D
Sbjct: 8 AGRTDAGVHATGQVV------HVDVVPLAPGSAGRVPVFAEGIPDLTRMAGRWNRLLPGD 61
Query: 203 IRVIGWSPAPTDFSARFSCISREYKY-----------------FFWRENLNLSAMESAGK 245
+RV+G AP F ARFS + R Y+Y W L+ AM +A
Sbjct: 62 VRVLGARIAPEGFDARFSAVRRHYRYRVSDAPWGVDPLRRHDTLAWNRPLSTDAMNAAAA 121
Query: 246 KFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRC 305
+ +G HDF +CK + T E+ + L +++ AF VR
Sbjct: 122 ELLGLHDFAAYCK-------QRETGTTIRELQRLEWTRVDEHLLEVRVSADAFCHSMVRS 174
Query: 306 MVAVLFMIGQG 316
+V VL ++G G
Sbjct: 175 LVGVLLLVGDG 185
>gi|419708929|ref|ZP_14236397.1| tRNA pseudouridine synthase A [Mycobacterium abscessus M93]
gi|382942810|gb|EIC67124.1| tRNA pseudouridine synthase A [Mycobacterium abscessus M93]
Length = 294
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 112/284 (39%), Gaps = 57/284 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ N TV + +A +V D + + + GRTD GV + G
Sbjct: 20 LDIAYDGTDFAGWATQLNQR-TVAGVLGEAFTT---IVGDPVQLYAA--GRTDAGVHATG 73
Query: 156 QVIAI--------YLRSNIKECNTNNASMGETVQEEQIEDEID-YVRVLNRVLPKDIRVI 206
QV + LR + E D VR L+R LP D+RV+
Sbjct: 74 QVAHLDVPVACLPGLRGRYRPAGAP---------------EFDRLVRRLSRFLPSDVRVL 118
Query: 207 GWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVG 249
S AP F ARFS + R Y+Y W L++ AM A + +G
Sbjct: 119 DISRAPAHFDARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLG 178
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
DF FC+ + + T E+ +G +L A + AF W VR +V
Sbjct: 179 LRDFAAFCR-------HREGATTIRELQRFDWGVDGQRLTAY-VSADAFCWSMVRSLVGA 230
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ +G+G + LL N R + AP L L D+
Sbjct: 231 VLAVGEGRRPVQWCVDLL--NKERRSSDFAAAPARGLTLVGVDY 272
>gi|386841908|ref|YP_006246966.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374102209|gb|AEY91093.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451795202|gb|AGF65251.1| tRNA pseudouridine synthase A [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 287
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 98/240 (40%), Gaps = 44/240 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G F+G+A TV+ EI AL R + ++ + GRTD GV +
Sbjct: 12 VRLDLSYDGTGFHGWAKQAGGRRTVQGEIEDAL---RTVTRSRETYELTVAGRTDAGVHA 68
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + E V E E + R+ R LPKD+RV AP+
Sbjct: 69 RGQVAHV--------------DLPEGVWREHHEKLLK--RLAGR-LPKDVRVWALREAPS 111
Query: 214 DFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFRNF 256
F+ARFS + R Y Y W + L++ AM A + +GEHDF +
Sbjct: 112 GFNARFSAVWRRYAYRVTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARTLLGEHDFAAY 171
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
CK T + + + + +R AF + VR ++ L +G G
Sbjct: 172 CKKREGA-------TTIRTLQELSLVRGEDGIITATVRADAFCHNMVRSLIGALLFVGDG 224
>gi|451943286|ref|YP_007463922.1| tRNA pseudouridine synthase A [Corynebacterium halotolerans YIM
70093 = DSM 44683]
gi|451902673|gb|AGF71560.1| tRNA pseudouridine synthase A [Corynebacterium halotolerans YIM
70093 = DSM 44683]
Length = 301
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 116/277 (41%), Gaps = 42/277 (15%)
Query: 96 LKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
L V Y G F+G+A G+ TV+ + +AL R+L + ++ + GRTD GV +
Sbjct: 25 LDVAYDGTDFHGWAKQGDSGLRTVQGVLEEAL--GRIL---RTDAELTVAGRTDAGVHAS 79
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
QV + + ++ E + + D VR L R+LP+D+RV + AP
Sbjct: 80 AQVAHLDIPADRLEQRSIDG------------DPARLVRRLGRLLPEDVRVHDCTLAPAG 127
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y Y W + ++L +M +A VG HDF FC
Sbjct: 128 FDARFSALRRHYVYRVTTHPRGALPTRARDTAAWPKPVDLESMRAAADVLVGLHDFAAFC 187
Query: 258 KMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
K A H R + SF E QL + AF W VR +V +G+G
Sbjct: 188 K---AKPHATTVRDLQSFTWHDVSTPAE-PQLYEAHVTADAFCWSMVRSLVGACLAVGEG 243
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
D LLD R P +A L L D+
Sbjct: 244 RRGEDFTRGLLDERT--RSPLVPVAAAKGLSLTGVDY 278
>gi|398844100|ref|ZP_10601204.1| pseudouridylate synthase I [Pseudomonas sp. GM84]
gi|398254905|gb|EJN39958.1| pseudouridylate synthase I [Pseudomonas sp. GM84]
Length = 286
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 97/243 (39%), Gaps = 56/243 (23%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + P+V+ + +AL K VA++ S GRTD GV
Sbjct: 21 IALGVEYKGSRYRGWQRQASGVPSVQQALEQALSK----VANEPISVVC-AGRTDAGVHG 75
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQ++ + DE + N LP DI V+ P P
Sbjct: 76 CGQIVHF--------------------DTHAVRDERAWTLGTNFNLPHDISVVWSRPMPA 115
Query: 214 DFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNF- 256
DF ARF +R Y+Y + + L++ M A + +G HDF F
Sbjct: 116 DFHARFKACARRYRYVIYNDPIRPAHLAEEVTWNHRPLDVERMAEAAQYLLGTHDFSAFR 175
Query: 257 ---CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
C+ + H + VT Q+ + +R +AFL H VR + VL I
Sbjct: 176 ASQCQAKSPIKHIHHLRVTRH-----------GQMIVLDVRATAFLHHMVRNIAGVLMTI 224
Query: 314 GQG 316
G G
Sbjct: 225 GAG 227
>gi|334326921|ref|XP_001378494.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Monodelphis domestica]
Length = 516
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 55/289 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASD--GNMEPTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ ++G + + T+E ++ AL ++ + D ++ + RC
Sbjct: 99 KRKIVLLMAYSGKGYHGMQRNLGSSQFKTIEDDLVFALVQSGCIPENHGEDMRKMAFQRC 158
Query: 145 GRTDKGVSSVGQVIA--IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
RTDKGVS+ GQ+++ ++L NI E +N LP
Sbjct: 159 ARTDKGVSAAGQIVSLKVWLIDNILEK-------------------------INSHLPSH 193
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF------------WRENLNLSA--MESAGK--- 245
IR++G F+++ C +R Y Y E LS+ +E +
Sbjct: 194 IRILGLKRVTGSFNSKNRCDARTYFYMLPTFAFAHKDHDVQDETYRLSSETLEKVNQLLA 253
Query: 246 KFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRC 305
+ G H F NF + +R++ ++ EG + IK++G +F+ HQ+R
Sbjct: 254 SYKGTHSFHNFTSQKGPKEPSARRYIMEMHCEAPFVR-EGMEFAVIKVKGQSFMMHQIRK 312
Query: 306 MVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
MV ++ I +G V ES+++ + K AP + LVL+ F+
Sbjct: 313 MVGLVIAIMKGY----VPESVMERSWGEEKVDIPKAPGLGLVLERVHFE 357
>gi|251823909|ref|NP_001156523.1| tRNA pseudouridine synthase A [Ovis aries]
gi|238815029|gb|ACR56711.1| pseudouridylate synthase 1 [Ovis aries]
Length = 400
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 148/360 (41%), Gaps = 66/360 (18%)
Query: 46 EDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHF-KRYVALKVMYFGQR 104
+ KV G + T + EE + KK+K G KR + L + Y G+
Sbjct: 18 DKKVRSGWQGPTRVWEETEQQ--------AKKLKSSEDGEQQRKLPKRKIVLLMAYSGKG 69
Query: 105 FYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRCGRTDKGVSSVGQVI 158
++G + G+ + T+E ++ AL ++ + D ++ + RC RTDKGVS+ GQV+
Sbjct: 70 YHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVV 129
Query: 159 A--IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFS 216
+ ++L +I E +N LP IR++G F+
Sbjct: 130 SLKVWLIDDILE-------------------------KINSHLPSHIRILGLKRVTGGFN 164
Query: 217 ARFSCISREYKYF------------FWRENLNLSAMESAGKK------FVGEHDFRNFCK 258
++ C +R Y Y E LSA E+ G+ + G H+F NF
Sbjct: 165 SKNKCDARTYFYMLPTFAFAHKDHDLQDETYRLSA-ETLGRVNRLLACYKGTHNFHNFTS 223
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + +R++ ++ EG + IK++G +F+ HQ+R MV ++ I +G
Sbjct: 224 QKGPHEPSARRYILDMFCEEPFVR-EGMEFAVIKVKGQSFMTHQIRKMVGLVVAIIKGYA 282
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQV 378
V+E K AP + LVL+ F+ D H+ R E +V
Sbjct: 283 PEGVLERCWGEA----KVDVPKAPGLGLVLERVHFEKYNQRFGHDGLHEPLDWAREEAEV 338
>gi|82751809|ref|YP_417550.1| tRNA pseudouridine synthase A [Staphylococcus aureus RF122]
gi|123727496|sp|Q2YYM7.1|TRUA_STAAB RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|82657340|emb|CAI81781.1| tRNA pseudouridine synthase A [Staphylococcus aureus RF122]
Length = 267
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPVDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQRGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|410459899|ref|ZP_11313588.1| tRNA pseudouridine synthase A [Bacillus azotoformans LMG 9581]
gi|409928010|gb|EKN65134.1| tRNA pseudouridine synthase A [Bacillus azotoformans LMG 9581]
Length = 245
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 113/262 (43%), Gaps = 52/262 (19%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G F GF N TV+ +I KAL K + +E GRTD GV + GQV
Sbjct: 8 IAYDGTNFSGFQVQSNGR-TVQGDIEKALFK----LHKGEEIRIHPSGRTDAGVHAHGQV 62
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
I ++ + V Q+ LN +LP DI + TDF A
Sbjct: 63 IHF------------DSPLSIPVDRYQM--------ALNTLLPDDIVALTIENVNTDFHA 102
Query: 218 RFSCISREYKYFF--------WREN--------LNLSAMESAGKKFVGEHDFRNFCKMDA 261
R++ + +EY+YF +R+N +NL + A K +G HDF +FC
Sbjct: 103 RYNVVKKEYRYFLLNQKERDVFRKNHSYYYPYAINLDRIIEATKYLLGAHDFTSFCST-K 161
Query: 262 ANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG-LESI 320
++ N R + EI ++ N + G+ FL++ VR +V L +GQG LE
Sbjct: 162 SDKENKVRTIEEIEI------WKENNEIVFRFVGNGFLYNMVRIIVGTLLKVGQGKLEPE 215
Query: 321 DVIESLLDTNGIPRKPQYNMAP 342
D+ L + N RK AP
Sbjct: 216 DIKVILEEKN---RKAAGKTAP 234
>gi|229009911|ref|ZP_04167130.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides DSM 2048]
gi|229131424|ref|ZP_04260320.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST196]
gi|228652008|gb|EEL07949.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BDRD-ST196]
gi|228751342|gb|EEM01149.1| tRNA pseudouridine synthase A 2 [Bacillus mycoides DSM 2048]
Length = 268
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 52/275 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ GN + T++ +I + + +V KE C RTD GV ++
Sbjct: 29 LTIQYDGARYKGWQRLGNNDNTIQGKIESIISE---MVG--KEIEIIGCSRTDAGVHALN 83
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N E + E +++ + LN+ LP DI + P F
Sbjct: 84 QVA--------------NFQSDEKLVEHKVK------KYLNQYLPNDISITSVEEVPDRF 123
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E LN+ +M+ A K VG HDF F
Sbjct: 124 HARYNSKAKTYLYKIWNEEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNA 183
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + R V + ++S E + I++ G+ FL + VR +V L +G G
Sbjct: 184 KSKK-KSMVREVYTLDVS------EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLE 236
Query: 320 IDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
D I ++L+ ++ Q N +A L L++ +F
Sbjct: 237 ADAIPNILEE---KQRNQINCLAEASGLYLENVEF 268
>gi|334705368|ref|ZP_08521234.1| tRNA pseudouridine synthase A [Aeromonas caviae Ae398]
Length = 269
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 109/251 (43%), Gaps = 51/251 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
+AL + Y G R++G+ + +V+ E+ KAL + +A+ S +C GRTD GV
Sbjct: 3 IALGIEYDGSRYFGWQRQREVI-SVQEELEKALSR----IANHPVS--IQCAGRTDAGVH 55
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQVI SN E ++G LN LP DI V
Sbjct: 56 ATGQVIHFDTESNRAE---GAWTLG-----------------LNSNLPPDIAVRWVREVD 95
Query: 213 TDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNF 256
F ARFS +R Y+Y + N ++ + M AG+ +GEHDF F
Sbjct: 96 EHFHARFSATARRYRYVIYNHNYRPAILGQGVSHYHEAIDATLMHQAGQSLLGEHDFSTF 155
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ A + R+VT +S + I+ +AFL H VR + L ++GQG
Sbjct: 156 -RAVACQSNTPWRNVTHLCVS------RSGPYIVLDIKANAFLHHMVRNITGSLLLVGQG 208
Query: 317 LESIDVIESLL 327
L+ + I +L
Sbjct: 209 LQPVQWIAEVL 219
>gi|157374791|ref|YP_001473391.1| tRNA pseudouridine synthase A [Shewanella sediminis HAW-EB3]
gi|189030145|sp|A8FTU0.1|TRUA_SHESH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|157317165|gb|ABV36263.1| tRNA-pseudouridine synthase I [Shewanella sediminis HAW-EB3]
Length = 261
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 111/252 (44%), Gaps = 51/252 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
VAL + Y G++++G+ ++ +V++++ +AL K E C GRTD GV
Sbjct: 3 VALGIEYDGRQYFGWQRQAEVD-SVQAQLERALSKV------ANEPIRVHCAGRTDAGVH 55
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQV+ E N I + + +N LP DI V
Sbjct: 56 ATGQVVHF-------ETNA-------------IRKDSAWTLGVNVNLPDDIAVRWVKIVD 95
Query: 213 TDFSARFSCISREYKYFFW----------------RENLNLSAMESAGKKFVGEHDFRNF 256
+F ARFS +R Y+Y + R N++ M A ++FVGEHDF +F
Sbjct: 96 DEFHARFSATARRYRYMIYNYDFRPGILRSGVSHYRGNIDADIMHQAAQQFVGEHDFTSF 155
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ + ++ + ++ +G +C + I+ +AFL H VR +V L IG G
Sbjct: 156 RALHCQSKTPFR------SVHEVNVTRQGMYIC-VDIKANAFLHHMVRNIVGTLLEIGLG 208
Query: 317 LESIDVIESLLD 328
+ + I LLD
Sbjct: 209 NQRPEWIPQLLD 220
>gi|295133853|ref|YP_003584529.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87]
gi|294981868|gb|ADF52333.1| tRNA pseudouridine synthase A [Zunongwangia profunda SM-A87]
Length = 262
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 118/283 (41%), Gaps = 44/283 (15%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+ Y +KV Y G R +G+ N + TVE I K L V + C RTD
Sbjct: 5 RYYYLIKVQYLGYRLHGWQKQPNFK-TVEGLITKTLR----YVMPETRYKVLGCSRTDAM 59
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
VSS G ++ V E+ +E+ D++ + N LP+DIRV
Sbjct: 60 VSSNGSAFELF------------------VDEQPLENLEDFLALFNLNLPQDIRVTDIEE 101
Query: 211 APTDFSARFSCISREYKYFF----------------WRENLNLSAMESAGKKFVGEHDFR 254
+F+ +EY Y F ++ +L++ M+ + F G H+FR
Sbjct: 102 VGANFNIIQHSKIKEYAYLFSFGSKNHPFCAPFMANFQFDLDIDKMKKGAQLFNGTHNFR 161
Query: 255 NFCKMDAANVHNYKRHVTSFEI--SPCYIS-FEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
N+C + + ++R + EI + Y + F + + G FL HQVR M+ +
Sbjct: 162 NYC-VRVSEKSTFEREILKAEIVENKLYTANFFPKKSYIFHVHGKGFLRHQVRLMMGAMI 220
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+G+G S+ IE L + Y+ AP L+L FD
Sbjct: 221 QLGRGEFSLGDIEQSLKEGNEHLQMDYS-APASGLILNDIHFD 262
>gi|260438877|ref|ZP_05792693.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876]
gi|292808716|gb|EFF67921.1| tRNA pseudouridine synthase A [Butyrivibrio crossotus DSM 2876]
Length = 249
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 114/283 (40%), Gaps = 54/283 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
K+ K+M+ G R++G+ N + T++ +I L++ +V+ +K CGRTD G
Sbjct: 2 KQNFKFKIMFDGTRYFGWEHQPNTDLTIQGKIETVLQR---MVSSEKVPEVIGCGRTDAG 58
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + + +L +++ + I D +NR LP DI V+
Sbjct: 59 VHAKAMIANAFLETDM--------------STDAIRD------YMNRYLPDDICVLEVKE 98
Query: 211 APTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFR 254
A F +R+ + + Y Y ++ E ++ ME A K +G HD+
Sbjct: 99 AAERFHSRYKAVGKTYCYTCYTGPLKPVFDRKYVYYIEETPDIGKMEEAAKLLIGIHDYA 158
Query: 255 NFC---KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
+FC KM + V R V S +I + Q G+ FL H VR + L
Sbjct: 159 SFCSNPKMKKSTV----REVDSIQI------IKKGQYIRFTYHGTGFLQHMVRILTGTLL 208
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+G G + I L + R AP L + D++
Sbjct: 209 EVGFGKRDVSSIPELFEAKD--RSLAGFTAPASGLCMMQVDYN 249
>gi|168186842|ref|ZP_02621477.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund]
gi|169295253|gb|EDS77386.1| tRNA pseudouridine synthase A [Clostridium botulinum C str. Eklund]
Length = 245
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 64/273 (23%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKAL-----EKTRLLVADKKESHYSRCGR 146
R + L + Y G R+ G+ GN + T++ +I L EK L+ + GR
Sbjct: 2 RNIKLTIQYDGTRYKGWQKLGNNDTTIQHKIESVLNELLGEKVSLMAS----------GR 51
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TD GV + QV +N K E DEI + L + LP+DI V
Sbjct: 52 TDAGVHANMQV------ANFK------------TDSEISNDEI--FKYLYKYLPQDIVVT 91
Query: 207 GWSPAPTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGE 250
+ A +F +R++ + Y Y + +E L+L M+ A K F+GE
Sbjct: 92 SVNNASDNFHSRYNVKEKVYTYRIHNSEVHDVFTRKYSYHIKEKLDLKKMKEASKLFIGE 151
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
HDF++F + + K+ T I+ + N + I G+ FL+ +R +V L
Sbjct: 152 HDFKSFTALKS------KKKSTVKAINSITFRKKENDI-EIVFSGNGFLYKMIRILVGTL 204
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPE 343
G S+D I++++D K N+APE
Sbjct: 205 IQAGLNKISLDEIQNIMD------KKDRNIAPE 231
>gi|117619854|ref|YP_857188.1| tRNA pseudouridine synthase A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|166228676|sp|A0KLN7.1|TRUA_AERHH RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|117561261|gb|ABK38209.1| tRNA pseudouridine synthase A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 269
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 109/251 (43%), Gaps = 51/251 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
+AL + Y G R++G+ + +V+ E+ KAL + +A+ S +C GRTD GV
Sbjct: 3 IALGIEYDGSRYFGWQRQREVI-SVQEELEKALSR----IANHPVS--IQCAGRTDAGVH 55
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQVI + + N A T+ LN LP DI V
Sbjct: 56 ATGQVIHF-------DTDANRAEGAWTLG-------------LNSNLPPDIAVRWVKQVD 95
Query: 213 TDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNF 256
F ARFS +R Y+Y + N ++ M AG+ +GEHDF F
Sbjct: 96 EGFHARFSATARRYRYVIYNHNYRPAILGSGVSHYHETIDADLMHQAGQSLLGEHDFSTF 155
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ A + R+VT +S + I+ +AFL H VR + L ++GQG
Sbjct: 156 -RAVACQSNTPWRNVTHLCVS------RSGPYIVLDIKANAFLHHMVRNITGSLLLVGQG 208
Query: 317 LESIDVIESLL 327
L+ ++ I +L
Sbjct: 209 LQPVEWIAEVL 219
>gi|421144675|ref|ZP_15604583.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
gi|395488902|gb|EJG09749.1| tRNA pseudouridine synthase A [Fusobacterium nucleatum subsp.
fusiforme ATCC 51190]
Length = 245
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 102/240 (42%), Gaps = 46/240 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + ++ Y G R+YGF + + TV+ EI K L + K+E + GRTD+G
Sbjct: 3 RKNIKIEFRYDGSRYYGFQRQPD-KITVQGEIEKILR-----IVTKEEINLISAGRTDRG 56
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y SNI IE Y +L R LP DI ++
Sbjct: 57 VHANHQVSNFYTSSNI-----------------PIEK---YKYLLTRALPNDIDILSVEE 96
Query: 211 APTDFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNF 256
+F+AR + REY Y F ++ ++ +E F+G H+F+NF
Sbjct: 97 VDENFNARHNAKMREYIYIISWEKNPFEARYCKFVKDKIDAEKLEKIFSDFIGVHNFKNF 156
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
D + VT EI + + G I I+GSAFL QVR MV I G
Sbjct: 157 RLNDCVS------KVTIREIYQIEVKYFGENKIKIYIKGSAFLKSQVRIMVGTALEIYYG 210
>gi|312622107|ref|YP_004023720.1| tRNA pseudouridine synthase a [Caldicellulosiruptor kronotskyensis
2002]
gi|312202574|gb|ADQ45901.1| tRNA pseudouridine synthase A [Caldicellulosiruptor kronotskyensis
2002]
Length = 244
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 50/248 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G ++G+ N + T++ I +A++K +E + GRTD+GV
Sbjct: 2 RNILLTIEYDGTGYFGWQKQPNKK-TIQGTIEEAIKKLT-----GEEVNLIGSGRTDRGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++ Q ++N K + +I + + LN VLP DI +
Sbjct: 56 HALNQ------KANFKTSS-------------KIPTD-KFPLALNSVLPGDISIKDAIEV 95
Query: 212 PTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRN 255
P DFSAR+S + YKY +++ L++ AM+ + F+GE+DF++
Sbjct: 96 PLDFSARYSARQKTYKYLIYNKKSRPALLRNYAYYYPYQLDVDAMQRTCEYFIGEYDFKS 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC D+ +R + Y++FE N+ AI I + FL++ R + + +G
Sbjct: 156 FCSADSEAKTTIRR------VYNAYLTFE-NECIAIYITANGFLYNMARIIAGTILDVGA 208
Query: 316 G-LESIDV 322
G L+ +D+
Sbjct: 209 GKLKPMDI 216
>gi|163938417|ref|YP_001643301.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4]
gi|423485714|ref|ZP_17462396.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BtB2-4]
gi|423491438|ref|ZP_17468082.1| tRNA pseudouridine synthase A 2 [Bacillus cereus CER057]
gi|423501769|ref|ZP_17478386.1| tRNA pseudouridine synthase A 2 [Bacillus cereus CER074]
gi|423515265|ref|ZP_17491746.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA2-4]
gi|423596514|ref|ZP_17572541.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD048]
gi|423664454|ref|ZP_17639619.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM022]
gi|423671861|ref|ZP_17646865.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM034]
gi|423677678|ref|ZP_17652613.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM062]
gi|163860614|gb|ABY41673.1| tRNA pseudouridine synthase A [Bacillus weihenstephanensis KBAB4]
gi|401152216|gb|EJQ59655.1| tRNA pseudouridine synthase A 2 [Bacillus cereus CER074]
gi|401159782|gb|EJQ67162.1| tRNA pseudouridine synthase A 2 [Bacillus cereus CER057]
gi|401167391|gb|EJQ74675.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA2-4]
gi|401219684|gb|EJR26336.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD048]
gi|401290702|gb|EJR96391.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM034]
gi|401293025|gb|EJR98674.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM022]
gi|401306148|gb|EJS11657.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VDM062]
gi|402440978|gb|EJV72956.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BtB2-4]
Length = 245
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 118/275 (42%), Gaps = 52/275 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ GN + T++ +I + + +V KE C RTD GV ++
Sbjct: 6 LTIQYDGARYKGWQRLGNNDNTIQGKIESIISE---MVG--KEIEIIGCSRTDAGVHALN 60
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N E + E +++ + LN+ LP DI + P F
Sbjct: 61 QVA--------------NFQSDEKLVEHKVK------KYLNQYLPNDISITSVEEVPDRF 100
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E LN+ +M+ A K VG HDF F
Sbjct: 101 HARYNSKAKTYLYKIWNEEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNA 160
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + R V + ++S E + I++ G+ FL + VR +V L +G G
Sbjct: 161 KSKK-KSMVREVYTLDVS------EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLE 213
Query: 320 IDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
D I ++L+ ++ Q N +A L L++ +F
Sbjct: 214 ADAIPNILEE---KQRNQINCLAEASGLYLENVEF 245
>gi|126433747|ref|YP_001069438.1| tRNA pseudouridine synthase A [Mycobacterium sp. JLS]
gi|126233547|gb|ABN96947.1| tRNA pseudouridine synthase A [Mycobacterium sp. JLS]
Length = 299
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 104/280 (37%), Gaps = 49/280 (17%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L V Y G F G+A P L L + GRTD GV + G
Sbjct: 27 LDVSYDGTDFAGWA------PQTGQRTVAGLIDEALTTVFRTPVTVRAAGRTDAGVHATG 80
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDY---VRVLNRVLPKDIRVIGWSPAP 212
QV + + ++ DE ++ VR L R LP D+R+ AP
Sbjct: 81 QV---------AHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPADVRIRDIIRAP 131
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
T F ARFS + R Y Y W L++ AM AG + VG DF
Sbjct: 132 TGFDARFSALRRHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQLVGLRDFAA 191
Query: 256 FCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
FC+ A + + +R + +G+ + A + AF W VR +V L +
Sbjct: 192 FCRHREGATTIRDLQR---------LEWTRDGDLVTAY-VSADAFCWSMVRSLVGALIAV 241
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G+ + LL + R ++ AP L L D+
Sbjct: 242 GEHRREPEWCAGLL--SATRRSSEFAAAPPQGLTLVGVDY 279
>gi|125773069|ref|XP_001357793.1| GA17995 [Drosophila pseudoobscura pseudoobscura]
gi|54637526|gb|EAL26928.1| GA17995 [Drosophila pseudoobscura pseudoobscura]
Length = 409
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/317 (24%), Positives = 133/317 (41%), Gaps = 55/317 (17%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKE----SHYSRCGR 146
++ A+ + Y G +YG + M+ T+E E+FKA+ K + + D + + + R R
Sbjct: 69 RKKSAILLSYCGANYYGMQRNPGMQ-TIEEELFKAMLKHKWITEDSFDQVQIACFQRAAR 127
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ Q+ ++ ++ +E+D + N LP+ IR+
Sbjct: 128 TDKGVSAARQICSV-----------------------KLPEELD-LEAFNADLPEQIRLF 163
Query: 207 GWSPAPTDFSARFSCISREYKY------------------FFWRENLNLSAMESAGKKFV 248
G F+A+ C +R Y Y F L L ++ K +
Sbjct: 164 GVERVTKGFNAKDQCNARTYTYTLPTVAFASCEAESEQDTFRITPEL-LDRVKETLKLYE 222
Query: 249 GEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVA 308
G +F NF + KR + +F S + S +G + +K++G +F+ HQ+R MV
Sbjct: 223 GTKNFHNFTSKKNFLDPSAKRFIMAFTSSEPFQSPQGVEFVTLKVKGQSFMLHQIRKMVG 282
Query: 309 VLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDL 368
+ I +G + LD + MAP + LVL + ++ D H+
Sbjct: 283 LAIAIVRG----NTTAITLDRALTEERLDLPMAPGLGLVLDTVHYERYNERYGKDGIHN- 337
Query: 369 RLHLRNECQVYQLQAAI 385
L E Q Q+QA +
Sbjct: 338 --PLTWEAQETQVQAFV 352
>gi|76638649|ref|XP_593895.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial isoform 1
[Bos taurus]
gi|297484682|ref|XP_002694500.1| PREDICTED: tRNA pseudouridine synthase A, mitochondrial [Bos
taurus]
gi|296478661|tpg|DAA20776.1| TPA: pseudouridylate synthase 1 [Bos taurus]
gi|440909768|gb|ELR59645.1| tRNA pseudouridine synthase A, mitochondrial [Bos grunniens mutus]
Length = 433
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 149/360 (41%), Gaps = 66/360 (18%)
Query: 46 EDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHF-KRYVALKVMYFGQR 104
+ K G + T + EE + KK+K G KR + L + Y G+
Sbjct: 51 DKKARSGWQGPTRIWEETEQQ--------AKKLKSSEDGEQQRKLPKRKIVLLMAYSGKG 102
Query: 105 FYGFASD-GNME-PTVESEIFKALEKTRLLVA----DKKESHYSRCGRTDKGVSSVGQVI 158
++G + G+ + T+E ++ AL ++ + D ++ + RC RTDKGVS+ GQV+
Sbjct: 103 YHGMQRNVGSSKFKTIEDDLVSALVRSGCIPENHGEDMRKMSFQRCARTDKGVSAAGQVV 162
Query: 159 A--IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFS 216
+ ++L +I E +N LP IR++G F+
Sbjct: 163 SLKVWLIDDILE-------------------------KINSHLPSHIRILGLKRVTGGFN 197
Query: 217 ARFSCISREYKYFF------------WRENLNLSAMESAGKK------FVGEHDFRNFCK 258
++ C +R Y Y E LSA E+ G+ + G H+F NF
Sbjct: 198 SKNKCDARTYVYMLPTFAFAHKDHDSQDETYRLSA-ETLGRVNRLLACYKGTHNFHNFTS 256
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + +R++ ++ EG + IK++G +F+ HQ+R MV ++ I +G
Sbjct: 257 QKGPHEPSARRYILDMFCEEPFVR-EGMEFAVIKVKGQSFMTHQIRKMVGLVVAIVKGYA 315
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQV 378
ES+L+ K AP + LVL+ F+ D H+ R E +V
Sbjct: 316 P----ESVLERCWGEAKVDVPKAPGLGLVLERVHFEKYNQRFGHDGLHEPLDWAREEAEV 371
>gi|213964809|ref|ZP_03393008.1| tRNA pseudouridine synthase A [Corynebacterium amycolatum SK46]
gi|213952345|gb|EEB63728.1| tRNA pseudouridine synthase A [Corynebacterium amycolatum SK46]
Length = 333
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 118/284 (41%), Gaps = 48/284 (16%)
Query: 96 LKVMYFGQRFYGFASDGNM---EP--TVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+ Y G F+G+A+ + EP TV++ + LEK + + GRTD G
Sbjct: 50 FDIAYDGTDFHGWAAQRDKPTGEPVRTVQATLESTLEKVL-----RTPVQLTVAGRTDAG 104
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQV +++ + S+ D + VR + R+LP D+ + G S
Sbjct: 105 VHASGQVA----HADVPVSCLDTRSIAG--------DPGNLVRRVARLLPADVTLRGASF 152
Query: 211 APTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDF 253
AP+ F ARFS + R Y Y WR ++++ M+ A +G +DF
Sbjct: 153 APSGFDARFSALRRHYVYRVTSCVSGPLPTRARDTAHWRRSVDIDRMQVAADALLGLNDF 212
Query: 254 RNFC--KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
FC K A + +R F++S + + +L + AF W VR +V
Sbjct: 213 AAFCRHKPHATTTRDLQR-FQWFDVS----TRQEPELYEAHVTADAFCWSMVRSLVGACL 267
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355
+G+G + E LL R P +A L L D+ G
Sbjct: 268 SVGEGRREVGFTEQLLSEEK--RSPLVPVAEARGLSLVGVDYPG 309
>gi|257066904|ref|YP_003153160.1| tRNA pseudouridine synthase A [Anaerococcus prevotii DSM 20548]
gi|256798784|gb|ACV29439.1| tRNA pseudouridine synthase A [Anaerococcus prevotii DSM 20548]
Length = 246
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 104/259 (40%), Gaps = 48/259 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R V L+ Y G F GF + E +VE E+ A+ K +++ CGRTD GV
Sbjct: 3 RNVLLETAYDGTNFAGFQYQKD-ERSVEEELRNAIRKV-----TGEDNRIVSCGRTDSGV 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ + SNI + + +Q LP DI +
Sbjct: 57 HARSHFVNFLTASNI-----SPKAFSFHIQPH---------------LPDDILALSSKEV 96
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
DF ARFSC S+ YKY +R L+L ++ K GEHDFR
Sbjct: 97 SLDFHARFSCKSKLYKYVIYRGRLMYPVFRNYKEEISYPLDLKRLDQGLKILEGEHDFRL 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F + D N R +I Y EG+ L AI +G +FL +QVR MV L + +
Sbjct: 157 FMREDKKLKINTVR-----KIDEAYFEEEGDDL-AIYFKGESFLHNQVRIMVGSLIELSR 210
Query: 316 GLESIDVIESLLDTNGIPR 334
G S+D D + R
Sbjct: 211 GRLSLDDYRKFFDKDNNKR 229
>gi|345858432|ref|ZP_08810825.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
gi|344328451|gb|EGW39836.1| tRNA pseudouridine synthase A [Desulfosporosinus sp. OT]
Length = 263
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 106/244 (43%), Gaps = 53/244 (21%)
Query: 92 RYVALKVMYFGQRFYGFA-SDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
R + L V Y G ++GF D PT++ + +K LV ++E + GRTD G
Sbjct: 2 RNIRLTVAYDGTNYHGFQRQDQTYGPTIQGTLEAVWKK---LV--EEEVTLATAGRTDAG 56
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQV+ N + EE+I + N +LP+DIR++
Sbjct: 57 VHASGQVV--------------NFMTAARIPEEKIP------KAFNSLLPRDIRILQAES 96
Query: 211 APTDFSARFSCISREYKY---------FFWRE-------NLNLSAMESAGKKFVGEHDFR 254
P DF+AR+S + Y Y F R LN++ M++A F G H+F+
Sbjct: 97 VPHDFNARWSAKWKRYDYQIDNHRIPNVFLRLYASHVPIPLNVNQMQAAASLFEGHHNFK 156
Query: 255 NFCKMDAANVHNYKRHVTSFE--ISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
F A+ +FE I C + E + + G+ FL+H VR MV L
Sbjct: 157 TFAAAGGAS--------KTFERTIYRCQVK-EDKGIIRVSCVGNGFLYHMVRIMVGTLMD 207
Query: 313 IGQG 316
+G+G
Sbjct: 208 VGKG 211
>gi|295698698|ref|YP_003603353.1| tRNA pseudouridine synthase A [Candidatus Riesia pediculicola USDA]
gi|291157129|gb|ADD79574.1| tRNA pseudouridine synthase A [Candidatus Riesia pediculicola USDA]
Length = 255
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 110/254 (43%), Gaps = 47/254 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
K VAL + Y G R++G+ N +++ + +L+K + D+ Y GRTD G
Sbjct: 2 KNRVALGIQYDGSRYHGWQKQKNGLDSIQKRLESSLKK----LTDEDIKTYC-GGRTDSG 56
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQV+ + +I ++ +V +N LPKDI V+ P
Sbjct: 57 VHAFGQVVHF--------------------ETYKIRKDVVWVSGVNHFLPKDISVLWVKP 96
Query: 211 APTDFSARFSCISREYKYF---------FWREN-------LNLSAMESAGKKFVGEHDFR 254
F ARFS ISR Y+Y +R N L+ M A + +GE+D
Sbjct: 97 VSHRFHARFSAISRHYRYLIFNKEIRPAIFRSNVLHISKKLDYKDMNKAAQCLLGENDLI 156
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+F D + + KR++ + + I I ++F ++ VR +V L +G
Sbjct: 157 SFISFDRRSFRSTKRNIRYINVKRF------DSYVIIDIVANSFAYNMVRNIVGSLIEVG 210
Query: 315 QGLESIDVIESLLD 328
G + + I+ L+D
Sbjct: 211 LGKKGTEWIKKLID 224
>gi|311070796|ref|YP_003975719.1| tRNA pseudouridine synthase A [Bacillus atrophaeus 1942]
gi|419823139|ref|ZP_14346699.1| tRNA pseudouridine synthase A [Bacillus atrophaeus C89]
gi|310871313|gb|ADP34788.1| tRNA pseudouridine synthase A [Bacillus atrophaeus 1942]
gi|388472670|gb|EIM09433.1| tRNA pseudouridine synthase A [Bacillus atrophaeus C89]
Length = 247
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 76/276 (27%), Positives = 117/276 (42%), Gaps = 55/276 (19%)
Query: 98 VMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
+ Y G F G+ ++P TV++E+ KAL +L + + GRTD GV +
Sbjct: 7 ISYDGHLFNGY----QVQPGKRTVQAELEKALA---ILHKSEDKVPVISSGRTDSGVHAA 59
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQVI + ++ E+ + LN +LP DI V A
Sbjct: 60 GQVI--------------HFDTPLSIPAER------WPYALNALLPGDIAVKTAEHADDG 99
Query: 215 FSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCK 258
F ARFS I +EY+YF + E LN+ M A + +G HDF +FC
Sbjct: 100 FHARFSAIKKEYRYFVYTEKHPDVFKRHYAYHFSYRLNVQKMREASEHLIGTHDFTSFC- 158
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+AN + T +E+ + + ++I GS FL++ VR + L +G G
Sbjct: 159 --SANTEVRDKVRTIYELDWT----DTDDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKF 212
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
S D ++ +LD R+ AP L L +D
Sbjct: 213 SADDVKGMLDAK--DREAAGRTAPGHGLYLWHVYYD 246
>gi|420865258|ref|ZP_15328647.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0303]
gi|420870048|ref|ZP_15333430.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0726-RA]
gi|420874494|ref|ZP_15337870.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0726-RB]
gi|392063974|gb|EIT89823.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0303]
gi|392065969|gb|EIT91817.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0726-RB]
gi|392069518|gb|EIT95365.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0726-RA]
Length = 294
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 113/284 (39%), Gaps = 57/284 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ N TV + +A +V D + + + GRTD GV + G
Sbjct: 20 LDIAYDGTDFAGWATQVNQR-TVAGVLGEAFTT---IVGDPVQLYAA--GRTDAGVHATG 73
Query: 156 QV----IAIY----LRSNIKECNTNNASMGETVQEEQIEDEID-YVRVLNRVLPKDIRVI 206
QV + + LR + E D VR L+R LP D+RV+
Sbjct: 74 QVGHLDVPVACLPGLRGRYRPAGAP---------------EFDRLVRRLSRFLPSDVRVL 118
Query: 207 GWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVG 249
S AP F ARFS + R Y+Y W L++ AM A + +G
Sbjct: 119 DISRAPAHFDARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLG 178
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
DF FC+ + + T E+ +G +L A + AF W VR +V
Sbjct: 179 LRDFAAFCR-------HREGATTIRELQRFDWGVDGQRLTAY-VSADAFCWSMVRSLVGA 230
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ +G+G + LL N R + AP L L D+
Sbjct: 231 VLAVGEGRRPVQWCVDLL--NKERRSSDFAAAPARGLTLVGVDY 272
>gi|108798087|ref|YP_638284.1| tRNA pseudouridine synthase A [Mycobacterium sp. MCS]
gi|119867183|ref|YP_937135.1| tRNA pseudouridine synthase A [Mycobacterium sp. KMS]
gi|108768506|gb|ABG07228.1| tRNA pseudouridine synthase A [Mycobacterium sp. MCS]
gi|119693272|gb|ABL90345.1| tRNA pseudouridine synthase A [Mycobacterium sp. KMS]
Length = 299
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 104/280 (37%), Gaps = 49/280 (17%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L V Y G F G+A P L L + GRTD GV + G
Sbjct: 27 LDVSYDGTDFAGWA------PQTGQRTVAGLIDEALTTVFRTPVTVRAAGRTDAGVHATG 80
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDY---VRVLNRVLPKDIRVIGWSPAP 212
QV + + ++ DE ++ VR L R LP D+R+ AP
Sbjct: 81 QV---------AHVDVPDDALPHAYPRSARPDEPEFLPLVRRLGRFLPADVRIRDIIRAP 131
Query: 213 TDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRN 255
T F ARFS + R Y Y W L++ AM AG + VG DF
Sbjct: 132 TGFDARFSALRRHYTYRLGTAPYGVEPQSARFVTPWPRPLDVEAMNDAGSQLVGLRDFAA 191
Query: 256 FCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
FC+ A + + +R + +G+ + A + AF W VR +V L +
Sbjct: 192 FCRHREGATTIRDLQR---------LEWTRDGDLVTAY-VSADAFCWSMVRSLVGALIAV 241
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
G+ + LL + R ++ AP L L D+
Sbjct: 242 GEHRREPEWCAGLL--SATRRSSEFAAAPPQGLTLVGVDY 279
>gi|423455957|ref|ZP_17432810.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5X1-1]
gi|401133381|gb|EJQ41012.1| tRNA pseudouridine synthase A 2 [Bacillus cereus BAG5X1-1]
Length = 245
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 106/249 (42%), Gaps = 48/249 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ GN + T++ +I + + +V KE+ C RTD GV ++
Sbjct: 6 LTIQYDGARYKGWQRLGNNDNTIQGKIESIISE---MVG--KETEIIGCSRTDAGVHALN 60
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N E + E +++ + LN+ LP DI + P F
Sbjct: 61 QVA--------------NFQSDEKLVEHKVK------KYLNQYLPNDISITSVEEVPDRF 100
Query: 216 SARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E LN+ M+ A K +G HDF F
Sbjct: 101 HARYNSKAKTYLYKIWNEEHTNPFMRKYSMHVNKPLNVKIMKEAAKHLIGSHDFTAFSNA 160
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + R V + ++ FE + I++ G+ FL + VR +V L +G G
Sbjct: 161 KSKK-KSMVREVYTLDV------FEESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLE 213
Query: 320 IDVIESLLD 328
D I ++L+
Sbjct: 214 ADAIPNILE 222
>gi|340754265|ref|ZP_08691027.1| tRNA pseudouridine synthase A [Fusobacterium sp. 2_1_31]
gi|340566576|gb|EEO38835.2| tRNA pseudouridine synthase A [Fusobacterium sp. 2_1_31]
Length = 248
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 99/232 (42%), Gaps = 46/232 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
++ + ++ Y G R+YGF N E TV+ EI K L+ + K++ + GRTD+G
Sbjct: 5 RKNIKIEFRYDGSRYYGFQRQPNKE-TVQGEIEKILK-----IVTKEDINLISAGRTDRG 58
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + QV Y S T+ E+ Y +L R LPKDI ++
Sbjct: 59 VHANHQVSNFYTSS--------------TIPVEK------YKYLLTRALPKDIDILSVEE 98
Query: 211 APTDFSARFSCISREYKYF--------------FWRENLNLSAMESAGKKFVGEHDFRNF 256
F+AR REY Y F ++ ++ +E F+G HDFRNF
Sbjct: 99 VDEKFNARHDAKMREYVYIISWEKNPFEARYCKFVKDKIDAERLEKIFSSFLGIHDFRNF 158
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVA 308
D + VT EI + + I IRGSAFL QVR MV
Sbjct: 159 RLSDCMS------KVTVREIYSIDVKYFSENKLKICIRGSAFLKSQVRIMVG 204
>gi|229821589|ref|YP_002883115.1| tRNA pseudouridine synthase A [Beutenbergia cavernae DSM 12333]
gi|229567502|gb|ACQ81353.1| tRNA pseudouridine synthase A [Beutenbergia cavernae DSM 12333]
Length = 286
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 116/278 (41%), Gaps = 41/278 (14%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G F G+A + TV+ ++ +AL + L + + GRTD GV +
Sbjct: 7 VRLDLAYDGAAFAGWARQPGLR-TVQGDLEEALGRVLRL---PEPPRLTVAGRTDAGVHA 62
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + L A + + E+ R L VLP D+ V +PAP
Sbjct: 63 RGQVAHVDL--------PREAYLAAPGRSERDPGAALRTR-LAGVLPPDVVVGHVAPAPP 113
Query: 214 DFSARFSCISREYKY----------------FFW-RENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS I R Y Y W R L++ AM++A ++ +GEHDF F
Sbjct: 114 GFDARFSAIWRRYAYRVADDGALHDPLRRGWTVWHRRPLDVVAMDAAARRLLGEHDFAAF 173
Query: 257 CK-MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
C+ + A + +T ++ + L A +R AF VR +V +G+
Sbjct: 174 CRPREGATTIRTLQELT-------WVRDDAGLLVA-HVRADAFCHSMVRALVGACLAVGE 225
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ ++LD R +AP LVL+ +
Sbjct: 226 SRREVGWPRAVLDAAR--RDSAVQVAPAHGLVLEEIGY 261
>gi|302871559|ref|YP_003840195.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis
OB47]
gi|302574418|gb|ADL42209.1| tRNA pseudouridine synthase A [Caldicellulosiruptor obsidiansis
OB47]
Length = 244
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 50/248 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G ++G+ N + T++ I +A++K +E + GRTD+GV
Sbjct: 2 RNILLTIEYDGTGYFGWQKQPNKK-TIQGTIEEAIKKLT-----GEEVNLIGSGRTDRGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++ Q ++N K + +I + + LN VLP DI V
Sbjct: 56 HALNQ------KANFKTSS-------------KIPTD-KFPLALNSVLPGDISVKDAIEV 95
Query: 212 PTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRN 255
DFSAR+S + YKY +++ L++ AM+ A + F+GE+DF++
Sbjct: 96 SLDFSARYSAKQKTYKYLIYNKKSRPALLRNYAYYYPYELDVDAMQRACEYFIGEYDFKS 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +D+ + +R I Y++FE N+ AI + + FL++ R + + +G
Sbjct: 156 FCSVDSESKTTVRR------IYNAYLTFE-NECIAIYLTANGFLYNMARIIAGTILDVGA 208
Query: 316 G-LESIDV 322
G L+ +D+
Sbjct: 209 GKLKPMDI 216
>gi|452972629|gb|EME72458.1| tRNA pseudouridine synthase A [Bacillus sonorensis L12]
Length = 247
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 109/276 (39%), Gaps = 55/276 (19%)
Query: 98 VMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
+ Y G FYG+ ++P TV+ E+ +AL + L K+ GRTD GV +V
Sbjct: 7 ISYDGHLFYGY----QVQPGQRTVQDELERAL---KTLHKSKERIPVVASGRTDSGVHAV 59
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQ I + +I E A LN +LP DI V
Sbjct: 60 GQTIHFDTQLSIPETKWPYA--------------------LNALLPDDIAVTKAEAVDDQ 99
Query: 215 FSARFSCISREYKYFFWR----------------ENLNLSAMESAGKKFVGEHDFRNFCK 258
F ARFS +EY+Y +R L+L +E A + VG HDF +FC
Sbjct: 100 FHARFSAKKKEYRYMIYRGRHLNVFKRHYAYHVPYELDLQMVEKAAQHLVGTHDFTSFCT 159
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
V + R + E S E ++I GS FL++ VR + L +G G
Sbjct: 160 A-KTEVKDKVRTIYELEWS------ETEDGLQMRIVGSGFLYNMVRIIAGTLLDVGTGKF 212
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
D IE ++ R AP L L + +D
Sbjct: 213 LPDDIEKMIAAKN--RDAAGRTAPAHGLYLWNVIYD 246
>gi|418034822|ref|ZP_12673291.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351468476|gb|EHA28696.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 247
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 118/276 (42%), Gaps = 55/276 (19%)
Query: 98 VMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
+ Y G F G+ ++P TV+ E+ KAL +L K GRTD GV +
Sbjct: 7 ISYDGHLFNGY----QVQPGKRTVQDELEKALA---VLHKSKDRIPVVSSGRTDSGVHAA 59
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQVI + ++ E+ + LN +LP DI V A
Sbjct: 60 GQVI--------------HFDTPLSIPAER------WPYALNALLPDDIAVKQAEIADDG 99
Query: 215 FSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCK 258
F ARFS + +EY+YF + E LN+ M A K +G HDF +FC
Sbjct: 100 FHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFC- 158
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
AA + T +E+ + +G Q+ +I GS FL++ VR + L +G G
Sbjct: 159 --AAKTEVQDKVRTIYELDWTETA-DGLQM---RITGSGFLYNMVRIIAGTLLDVGIGKI 212
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
S D ++S+L+ R+ AP L L + +D
Sbjct: 213 SPDEVKSMLEAKD--REAAGRTAPGHGLYLWNVYYD 246
>gi|268608385|ref|ZP_06142112.1| tRNA pseudouridine synthase A [Ruminococcus flavefaciens FD-1]
Length = 257
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 105/262 (40%), Gaps = 64/262 (24%)
Query: 92 RYVALKVMYFGQRFYGFASDGN---MEPTVESEIFKALEKTRLLVADKKESHYSRCGRTD 148
R + + + Y G ++GF N ++ T+E + K L + + C RTD
Sbjct: 2 RNLKVTIAYRGTNYHGFQIQNNAVTVQGTLEKHLSKVLNEPVSITG---------CSRTD 52
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
GV A N+K N+ +++G + R +N LP DI ++
Sbjct: 53 TGVH------ANMFCFNVKT-NSRISTLG-------------FCRGVNGELPDDISILSC 92
Query: 209 SPAPTDFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHD 252
P DF ARF C +EY Y F +R ++ A A + FVG HD
Sbjct: 93 EEVPIDFHARFDCKGKEYIYKMHCSESKDPFAPDMKFHYRRPFDIEAARKAAQYFVGTHD 152
Query: 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
F +FC D NV R + SF+I + ++G+ FL++ +R M L
Sbjct: 153 FSSFCA-DCTNVSTTVRTIYSFKIE------NSGDTVIMLVKGNGFLYNMIRIMAGTL-- 203
Query: 313 IGQGLESIDVIESLLDTNGIPR 334
IDV E + +PR
Sbjct: 204 -------IDVSEKRFSPDDMPR 218
>gi|375090172|ref|ZP_09736490.1| tRNA pseudouridine synthase A [Facklamia languida CCUG 37842]
gi|374565863|gb|EHR37122.1| tRNA pseudouridine synthase A [Facklamia languida CCUG 37842]
Length = 256
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 48/254 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
RY A+K+ Y G R+ G+ N P++++E+ +AL L AD+ + + GRTD GV
Sbjct: 3 RY-AIKIQYDGTRYVGYQVQPN-GPSIQAELDRALGLIAKLAADQNLATVA-AGRTDAGV 59
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++GQV+ I+ + ++ +N +LPKDI+V
Sbjct: 60 HALGQVVHFDFPFQIQPPHL--------------------LKAMNSILPKDIQVCDCRQV 99
Query: 212 PTDFSARFSCISREYKY---------FFWR-------ENLNLSAMESAGKKFVGEHDFRN 255
DF AR+ + + Y+Y F R +L+A++ GE+DF +
Sbjct: 100 GDDFHARYDAVGKFYRYRVDTQPYPDPFKRLYTTHHPYAYSLAAIQEGLSVLQGENDFTS 159
Query: 256 FCKMDAANVHNYKR--HVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
FC + +R + ++E + N+ +G+ FL++ +R +V I
Sbjct: 160 FCSTKTDKTNKVRRIDQILAYED-------QDNKELIFDFKGNGFLYNMIRIIVGTALQI 212
Query: 314 GQGLESIDVIESLL 327
G GL+ ++ ++ LL
Sbjct: 213 GDGLKPVEEMQRLL 226
>gi|282917564|ref|ZP_06325316.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
D139]
gi|283767311|ref|ZP_06340226.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
H19]
gi|282318526|gb|EFB48884.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
D139]
gi|283461190|gb|EFC08274.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
H19]
Length = 267
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ P + A E L L+ D + D G+D+++H + Q
Sbjct: 210 HEVSDVPKLLESKNRKNVP-FTAAAE-GLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|188584870|ref|YP_001916415.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|229557997|sp|B2A4Q5.1|TRUA_NATTJ RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|179349557|gb|ACB83827.1| tRNA pseudouridine synthase A [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 253
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 108/254 (42%), Gaps = 45/254 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L + Y G ++G+ N TV+ ++ KAL + K + YS RTD GV +
Sbjct: 4 IKLTIAYDGSNYHGYQLQENAV-TVQEKLEKALNT---VYYPYKITPYS-ASRTDSGVHA 58
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + I A LN LP DI +I +
Sbjct: 59 KGQVANFFAPKQIPIHKIPLA--------------------LNTNLPNDIAIINAEVVGS 98
Query: 214 DFSARFSCISREYKYF---------FWR--------ENLNLSAMESAGKKFVGEHDFRNF 256
+F AR I +EY+Y+ FWR +NL+ + ++ A F+G+HDF F
Sbjct: 99 NFRARRDAIKKEYRYYVYHAPYMDPFWRNYALHYREQNLDYTKLQQAANDFIGKHDFSPF 158
Query: 257 CKMDAANVH-NYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
+ +N + + + F+I + E L K+ G+AFL+ VR +V L IG
Sbjct: 159 RAIQGSNPSIDPVKEIYEFDIDVN--AGEDGNLIIFKVIGNAFLYKMVRILVGTLLQIGN 216
Query: 316 GLESIDVIESLLDT 329
G I+ ++ L T
Sbjct: 217 GKLEINAVKKALQT 230
>gi|350264244|ref|YP_004875551.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349597131|gb|AEP84919.1| tRNA pseudouridine synthase A [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 247
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 117/276 (42%), Gaps = 55/276 (19%)
Query: 98 VMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
+ Y G F G+ ++P TV++E+ KAL +L K GRTD GV +
Sbjct: 7 ISYDGHLFNGY----QVQPGKRTVQNELEKALA---VLHKSKDRIPVVSSGRTDSGVHAA 59
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQVI + ++ E+ + LN +LP DI V A
Sbjct: 60 GQVI--------------HFDTPLSIPAER------WPYALNALLPDDIAVKQAEIADDG 99
Query: 215 FSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCK 258
F ARFS + +EY+YF + E +LN+ M A K +G HDF +FC
Sbjct: 100 FHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHFSYHLNVQNMREAAKHLIGTHDFTSFCA 159
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ V + R + + + E + ++I GS FL++ VR +V L G G
Sbjct: 160 V-KTEVQDKVRTIYELDWT------ETDDGLQMRITGSGFLYNMVRIIVGTLLDAGIGKI 212
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
S D ++S+L R+ AP L L + +D
Sbjct: 213 SPDDVKSMLAAKD--REAAGRTAPGHGLYLWNVYYD 246
>gi|412988146|emb|CCO17482.1| tRNA pseudouridine synthase A [Bathycoccus prasinos]
Length = 314
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 116/260 (44%), Gaps = 51/260 (19%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
V Y G ++GF G + T++SE+ + L + L D++ GRTD GV + QV
Sbjct: 37 VSYDGTNYFGFQKQGEDKITIQSELERCLMQITCL--DRELLCLGAAGRTDAGVHARKQV 94
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
Y + E ++DE++++R NR+L +D+RV+ + F +
Sbjct: 95 FHFYTK-------------------EPLKDELNFMRACNRLLNEDVRVMEIAKPHPMFHS 135
Query: 218 RFSCISREYKYFF------------------WRENLNLSAMESAGKKFVGEHDFRNFCK- 258
RF I + Y+Y +RE ++ +E A K FVG HDF F
Sbjct: 136 RFHAIEKTYRYTIDFGLPHSPFHRKTALSVGYRE-YDMKLLEEACKVFVGTHDFAAFMNR 194
Query: 259 -MDAANV-HNYKRHVTSFEI------SPCYISFE--GNQLCAIKIRGSAFLWHQVRCMVA 308
D N+ N +R + SF++ +E + L + + G+ FL+ QVR MV
Sbjct: 195 SRDGKNLERNSERTIYSFDVIRGGGEEEGGERYEDPSSSLVYLYVTGNGFLYKQVRNMVG 254
Query: 309 VLFMIGQGLESIDVIESLLD 328
+ + G +ID ++ ++
Sbjct: 255 AILSVAGGRYTIDDLKLFME 274
>gi|224531952|ref|ZP_03672584.1| tRNA pseudouridine synthase A [Borrelia valaisiana VS116]
gi|224511417|gb|EEF81823.1| tRNA pseudouridine synthase A [Borrelia valaisiana VS116]
Length = 246
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/281 (27%), Positives = 113/281 (40%), Gaps = 54/281 (19%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + ++ Y G ++GF +PTV+ EI KAL K S GRTDKGV
Sbjct: 2 RKILAEIAYDGSIYHGFQIQPK-KPTVQGEIEKALMKINKKKIKIHSS-----GRTDKGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD-IRVIGWSP 210
+ GQ+I + NI+ N A LN +L K+ I+++
Sbjct: 56 HAKGQIITFDININIQLNNLKKA--------------------LNAILLKNSIKILKLKY 95
Query: 211 APTDFSARFSCISREYK--------YFFW--------RENLNLSAMESAGKKFVGEHDFR 254
F RF+ R+Y+ Y+ W + LN+S + K +G HDF
Sbjct: 96 VKNSFHPRFNAKKRKYRYCILNSNNYYPWEGYQAHYVNKKLNISNLNQMAKILIGNHDFT 155
Query: 255 NF-CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
F C D + H F+ YI FE I GS+FLW VR ++ + I
Sbjct: 156 TFSCIKDKSKSKFRHIHFAKFKKRGKYIIFE--------IIGSSFLWKMVRSIIGTMLDI 207
Query: 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
ESI + E++L + R AP L L ++
Sbjct: 208 EIKNESISIFETILKSKN--RNLARTTAPANALFLDKVYYE 246
>gi|387019437|gb|AFJ51836.1| tRNA pseudouridine synthase A, mitochondrial-like [Crotalus
adamanteus]
Length = 404
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 126/289 (43%), Gaps = 55/289 (19%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVA----DKKESHYSRC 144
K+ V L ++Y G+ ++G + T+E ++ AL K+ + D K+ + RC
Sbjct: 59 KKKVVLLLVYCGKGYHGMQRNVKTSQYRTIEDDLVSALIKSGCIPENHGEDMKKMSFQRC 118
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQ++++ + IE D ++ +N LP IR
Sbjct: 119 ARTDKGVSAAGQIVSLKVWL--------------------IE---DILQKINEHLPSHIR 155
Query: 205 VIGWSPAPTDFSARFSCISREYKYFF------------WRENLNLSA--MESAGKK---F 247
++G F+++ C +R Y Y E LSA +E+ +
Sbjct: 156 ILGLKRVTGKFNSKNRCDARTYSYMLPTFAFAHKDDAPQDETYRLSAETLEAVNHLLACY 215
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + KR++ ++ G + +K++G +F+ HQ+R M+
Sbjct: 216 KGTHNFHNFTSQKGPRDPSAKRYIMEMFCEEPFVR-NGMEFAVVKVKGQSFMMHQIRKMI 274
Query: 308 AVLFMIGQGLESIDVIESLLDTN--GIPRKPQYNMAPEIPLVLQSCDFD 354
++ I +G ++ ++E IP+ AP + L+L+ F+
Sbjct: 275 GLVIAIVKGHATLSILEQSWGEERVDIPK------APGLGLILERVHFE 317
>gi|421497755|ref|ZP_15944904.1| tRNA pseudouridine synthase A [Aeromonas media WS]
gi|407183215|gb|EKE57123.1| tRNA pseudouridine synthase A [Aeromonas media WS]
Length = 269
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 109/251 (43%), Gaps = 51/251 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
+AL + Y G R++G+ + +V++E+ KAL + +A+ S +C GRTD GV
Sbjct: 3 IALGIEYDGSRYFGWQRQREVI-SVQAELEKALSR----IANHPVS--IQCAGRTDAGVH 55
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQVI + N A T+ LN LP DI V
Sbjct: 56 ATGQVIHF-------DTEANRAEGAWTLG-------------LNSNLPPDIAVRWVKEVD 95
Query: 213 TDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNF 256
F ARFS +R Y+Y + N ++ M AG+ +GEHDF F
Sbjct: 96 ESFHARFSATARRYRYVIYNHNFRPAILGSGVSHYHETIDAELMHQAGQSLLGEHDFSTF 155
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ A + R+VT +S + I+ +AFL H VR + L ++GQG
Sbjct: 156 -RAIACQSNTPWRNVTHLCVS------RSGPYIVLDIKANAFLHHMVRNITGSLLLVGQG 208
Query: 317 LESIDVIESLL 327
L+ ++ I +L
Sbjct: 209 LKPVEWIAEVL 219
>gi|423526021|ref|ZP_17502473.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA4-10]
gi|401164847|gb|EJQ72179.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA4-10]
Length = 245
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 120/283 (42%), Gaps = 56/283 (19%)
Query: 88 HHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRT 147
H++K L + Y G R+ G+ GN + T++ +I + + ++ KE C RT
Sbjct: 2 HNYK----LTIQYDGARYKGWQRLGNNDNTIQGKIESVISE---MIG--KEIEIIGCSRT 52
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D GV ++ QV N E + E +++ + LN+ LP DI +
Sbjct: 53 DAGVHALNQVA--------------NFQSDEKLVEHKVK------KYLNQYLPNDISITS 92
Query: 208 WSPAPTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEH 251
P F AR++ ++ Y Y W E LN+ +M+ A K VG H
Sbjct: 93 VEEVPDRFHARYNSKAKTYLYKIWNEEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSH 152
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
DF F + + R V + ++S E I+I G+ FL + VR +V L
Sbjct: 153 DFTAFSNAKSKK-KSMVREVYTLDVS------EEAGFVQIRISGNGFLHNMVRKIVGALI 205
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
+G G D I ++L+ ++ Q N +A L L+ +F
Sbjct: 206 EVGLGQLEADAIPNILEE---KQRNQINCLAEASGLYLEKIEF 245
>gi|423514198|ref|ZP_17490714.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA2-1]
gi|402442881|gb|EJV74798.1| tRNA pseudouridine synthase A 2 [Bacillus cereus HuA2-1]
Length = 245
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 117/275 (42%), Gaps = 52/275 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G R+ G+ GN + T++ +I + + +V KE C RTD GV ++
Sbjct: 6 LTIQYDGARYKGWQRLGNNDNTIQGKIESIISE---MVG--KEIEIIGCSRTDAGVHALN 60
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N E + E +++ + LN+ LP DI + P F
Sbjct: 61 QVA--------------NFQSDEKLVEHKVK------KYLNQYLPNDISITSVEEVPDRF 100
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E LN+ +M+ A K VG HDF F
Sbjct: 101 HARYNSKAKTYLYKIWNEEHTNPFMRKYSMHVNKQLNVKSMKEAAKHLVGSHDFTAFSNA 160
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + R V + ++S E + I++ G+ FL + VR +V L +G G
Sbjct: 161 KSKK-KSMVREVYTLDVS------EESGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLE 213
Query: 320 IDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
D I ++L+ ++ Q N +A L L+ +F
Sbjct: 214 ADAIPNILEE---KQRNQINCLAEASGLYLEKIEF 245
>gi|443625111|ref|ZP_21109562.1| putative Pseudouridine synthase [Streptomyces viridochromogenes
Tue57]
gi|443341374|gb|ELS55565.1| putative Pseudouridine synthase [Streptomyces viridochromogenes
Tue57]
Length = 288
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 101/253 (39%), Gaps = 47/253 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY--SRCGRTDKGV 151
V L + Y G F+G+A TV+ EI AL V + Y + GRTD GV
Sbjct: 12 VRLDLSYDGSEFHGWAKQAGGRRTVQGEIEDALRT----VTRSGSTTYELTVAGRTDAGV 67
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV + + E V E E + R+ R LPKD+RV A
Sbjct: 68 HARGQVAHV--------------DLPEPVWREHHEKLLK--RLAGR-LPKDVRVWALREA 110
Query: 212 PTDFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFR 254
P+ F+ARFS + R Y Y W + L++ AM A + +GEHDF
Sbjct: 111 PSGFNARFSAVWRRYAYRVTDNPGGVDPLLRNHVLWHDWPLDVDAMNEAARGLLGEHDFA 170
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+CK + T + + + + +R AF + VR ++ L +G
Sbjct: 171 AYCK-------KREGATTIRTLQELSLVRGDDGIITATVRADAFCHNMVRSLIGALLFVG 223
Query: 315 QGLESIDVIESLL 327
G D +L
Sbjct: 224 DGHRPTDWPAKVL 236
>gi|420988722|ref|ZP_15451878.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0206]
gi|421040631|ref|ZP_15503639.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0116-R]
gi|421044846|ref|ZP_15507846.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0116-S]
gi|392183001|gb|EIV08652.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0206]
gi|392221559|gb|EIV47082.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0116-R]
gi|392234299|gb|EIV59797.1| tRNA pseudouridine synthase A [Mycobacterium abscessus 4S-0116-S]
Length = 277
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 77/284 (27%), Positives = 113/284 (39%), Gaps = 57/284 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A+ N TV + +A +V D + + + GRTD GV + G
Sbjct: 3 LDIAYDGTDFAGWATQVNQR-TVAGVLGEAFTT---IVGDPVQLYAA--GRTDAGVHATG 56
Query: 156 QV----IAIY----LRSNIKECNTNNASMGETVQEEQIEDEID-YVRVLNRVLPKDIRVI 206
QV + + LR + E D VR L+R LP D+RV+
Sbjct: 57 QVGHLDVPVACLPGLRGRYRPAGAP---------------EFDRLVRRLSRFLPSDVRVL 101
Query: 207 GWSPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVG 249
S AP F ARFS + R Y+Y W L++ AM A + +G
Sbjct: 102 DISRAPAHFDARFSALRRHYEYRLSTASFGVLPLARHDVVGWHRPLDVDAMNEASRNLLG 161
Query: 250 EHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
DF FC+ + + T E+ +G +L A + AF W VR +V
Sbjct: 162 LRDFAAFCR-------HREGATTIRELQRFDWGVDGQRLTAY-VSADAFCWSMVRSLVGA 213
Query: 310 LFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ +G+G + LL N R + AP L L D+
Sbjct: 214 VLAVGEGRRPVQWCVDLL--NKERRSSDFAAAPARGLTLVGVDY 255
>gi|384548427|ref|YP_005737680.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ED133]
gi|298695476|gb|ADI98698.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
ED133]
Length = 267
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 117/300 (39%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRNPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ P + A E L L+ D + D G+D+++H + Q
Sbjct: 210 HEVSDVPKLLESKNRKNVP-FTAAAE-GLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|206895862|ref|YP_002247302.1| tRNA pseudouridine synthase A [Coprothermobacter proteolyticus DSM
5265]
gi|238057727|sp|B5Y955.1|TRUA_COPPD RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|206738479|gb|ACI17557.1| tRNA pseudouridine synthase A [Coprothermobacter proteolyticus DSM
5265]
Length = 259
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 93/209 (44%), Gaps = 51/209 (24%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDI 203
GRTD GV + G + R ++ ++ +LNR+LPKD+
Sbjct: 48 SGRTDAGVHAWGMPFVFWGREDLSADK--------------------WMFILNRMLPKDM 87
Query: 204 RVIGWSPAPTDFSARFSCISREYKY--------------FFWRENLNL--SAMESAGKKF 247
RVI +F + S ++++Y Y F + NL++ SA+ SA +K
Sbjct: 88 RVISVVRTSPEFDPQLSAVAKQYLYCATQERLGPLWDDFFAYLPNLSIETSAVISAARKL 147
Query: 248 VGEHDFRNFCKMDAANVHNYKRHV----TSFEISPCYISFEGNQLCAIKIRGSAFLWHQV 303
VGEHDF+ F K ++V + +R + F S Y SF GN FL+ V
Sbjct: 148 VGEHDFKGFSK-KGSSVKSTRRKLYEVSVMFTHSRMYFSFVGN----------GFLYGMV 196
Query: 304 RCMVAVLFMIGQGLESIDVIESLLDTNGI 332
R MV L IG G + ++ I+ +L N +
Sbjct: 197 RLMVGTLLQIGWGKQDVNFIDEVLSGNAV 225
>gi|296119322|ref|ZP_06837890.1| tRNA pseudouridine synthase A [Corynebacterium ammoniagenes DSM
20306]
gi|295967714|gb|EFG80971.1| tRNA pseudouridine synthase A [Corynebacterium ammoniagenes DSM
20306]
Length = 297
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 105/251 (41%), Gaps = 41/251 (16%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
+ Y G F+G+AS TV+ + + L T +L + + GRTD GV + G
Sbjct: 19 FDIAYDGTDFHGWASQKGQLRTVQGVLEQCL--TMIL---RHPIELTVAGRTDAGVHAAG 73
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDE-IDYVRVLNRVLPKDIRVIGWSPAPTD 214
QV +++ E++Q+ I+ E VR L +++ DIR+ S AP
Sbjct: 74 QVA----HADVPV---------ESLQQRSIDGEPAKLVRRLAKLVDDDIRIHSVSFAPEG 120
Query: 215 FSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + R Y Y W +++ M+ A VG HDF FC
Sbjct: 121 FDARFSALRRHYVYRITTEEAGALPTRLRDTATWTRPVDIDLMQQAATTLVGLHDFAAFC 180
Query: 258 KMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
K A H R + F E N L + AF W VR +V +G+G
Sbjct: 181 K---AKPHATTIRDLQEFYWVDASTPSEPN-LYEAHVSADAFCWSMVRSLVGCCLAVGEG 236
Query: 317 LESIDVIESLL 327
I+ +E++L
Sbjct: 237 RRDINFVEAML 247
>gi|394994819|ref|ZP_10387526.1| tRNA pseudouridine synthase A [Bacillus sp. 916]
gi|393804386|gb|EJD65798.1| tRNA pseudouridine synthase A [Bacillus sp. 916]
Length = 247
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 118/280 (42%), Gaps = 55/280 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
V + Y G F G+ ++P TV+SE+ KAL + D + YS GRTD
Sbjct: 3 VKCTIAYDGHLFNGY----QVQPGKRTVQSELEKAL--AVIHKTDGRVPVYS-SGRTDSD 55
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQVI + ++ E+ + LN +LP DI V
Sbjct: 56 VHAAGQVI--------------HFDTPLSIPAEK------WPFALNALLPDDIAVKTAEI 95
Query: 211 APTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFR 254
A F ARFS + +EY+YF + E LN+ M A + VG HDF
Sbjct: 96 ADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHFAYQLNVQKMREASRHLVGTHDFT 155
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+FC D A V + R + + + E ++I G+ FL++ VR + L G
Sbjct: 156 SFCAADTA-VQDKVRTIYELDWT------ETGDGLQMRITGNGFLYNMVRIIAGTLLDTG 208
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G S D ++++L+ R+ AP L L S +D
Sbjct: 209 AGKFSPDDVKAMLEAKD--REAAGRTAPGHGLYLWSVCYD 246
>gi|111023127|ref|YP_706099.1| pseudouridylate synthase [Rhodococcus jostii RHA1]
gi|110822657|gb|ABG97941.1| pseudouridylate synthase [Rhodococcus jostii RHA1]
Length = 297
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 123/305 (40%), Gaps = 55/305 (18%)
Query: 68 SGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALE 127
S ++ + V + G +++ +R + L + Y G F G+A + TV EI
Sbjct: 3 SAHAESNEPVVPPRDGGPVSYGTRR-LRLDIAYDGTDFSGWARQNGLR-TVCGEI----- 55
Query: 128 KTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED 187
+ +L + + GRTD GV + GQV + + + +D
Sbjct: 56 EEKLGAVLRTPLQLTVAGRTDAGVHATGQVAHV-----------------DVPVDALPDD 98
Query: 188 EIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFF----------------- 230
VR L R LPKD+R+ + AP F ARFS + R Y+Y
Sbjct: 99 PSRLVRRLARFLPKDVRIKRIAFAPEHFDARFSAMRRHYEYRLTSAVYGADPLRARDTVS 158
Query: 231 WRENLNLSAMESAGKKFVGEHDFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQL 288
+ + L+L M SA +G HDF FCK A V + +R F+ +G+
Sbjct: 159 YPKVLDLELMRSASATLLGLHDFAAFCKRREGATTVRDLQR----FD-----WERDGDVF 209
Query: 289 CAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
A + AF W VR +V + +G+G + IE LL R +AP L L
Sbjct: 210 TAF-VSADAFCWSMVRSLVGAVLAVGEGRRDLGWIEGLLQEKS--RSSSILVAPAHGLSL 266
Query: 349 QSCDF 353
D+
Sbjct: 267 VRVDY 271
>gi|225376773|ref|ZP_03753994.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
gi|225211399|gb|EEG93753.1| hypothetical protein ROSEINA2194_02415 [Roseburia inulinivorans DSM
16841]
Length = 247
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 114/268 (42%), Gaps = 52/268 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L V Y G + G+ N T+E + + L K LL +E + RTD GV S
Sbjct: 4 VKLIVAYDGTNYCGWQVQPN-GITIEQVLNENLSK--LL---GEEITVTGASRTDSGVHS 57
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+G V AI+ + D+I + LN+ LP+DI V P+
Sbjct: 58 MGNV-AIF-----------------DTETRMPADKISFA--LNQRLPEDIVVQDSCEVPS 97
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
D+ R+ + Y+Y +F+ L++ M+ A VGEHDF++FC
Sbjct: 98 DWHPRYQVSRKTYEYRILNRTFRMPNRRLDTYFYHHKLDVDKMKQAASYLVGEHDFKSFC 157
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+ A + T+ I C + +GN + I++ G+ FL++ VR + L +G G
Sbjct: 158 AVGA------QVKTTTRTIYSCEVEKDGNDIITIRVTGNGFLYNMVRIIAGTLIRVGGGE 211
Query: 318 ESIDVIESLLD----TNGIPRKPQYNMA 341
+ D I +L T P P + +
Sbjct: 212 MAPDEIPQILGKKDRTAAGPTAPAHGLT 239
>gi|346311579|ref|ZP_08853582.1| tRNA pseudouridine synthase A [Collinsella tanakaei YIT 12063]
gi|345900642|gb|EGX70462.1| tRNA pseudouridine synthase A [Collinsella tanakaei YIT 12063]
Length = 278
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 106/240 (44%), Gaps = 43/240 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L V Y G RF G+A + TV EI +AL+ V +++ + GRTD GV +
Sbjct: 19 IVLCVGYDGARFSGYAEQPG-QLTVAGEIRRALQ-----VFLRRDVELTCAGRTDAGVHA 72
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIED-EIDYVRVLNRVLPKDIRVIGWSPAP 212
+ Q ++ E ++E ++R + +LP DI + A
Sbjct: 73 ISQYVSF------------------PAYESELEILRKRWMRAMAALLPSDISLNQVYHAS 114
Query: 213 TDFSARFSCISREYKY--------------FFW--RENLNLSAMESAGKKFVGEHDFRNF 256
FSARF +R Y Y + W R L++ AME A VGEHDF++F
Sbjct: 115 PGFSARFDARARTYTYRIATGESKPLLTRNYCWWHRMPLDVGAMERAAACLVGEHDFKSF 174
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
CK+ +A R V E+S G +L A I G+AFL VR +V L +G G
Sbjct: 175 CKVASAVGKPTCRFVR--EVSFASERQLGEELIAFTITGNAFLHSMVRTIVGSLVEVGSG 232
>gi|403743648|ref|ZP_10953200.1| tRNA pseudouridine synthase A [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122678|gb|EJY56883.1| tRNA pseudouridine synthase A [Alicyclobacillus hesperidum
URH17-3-68]
Length = 268
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/251 (30%), Positives = 107/251 (42%), Gaps = 51/251 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ L V Y G F+GFA + TV++ + + L TR+L + E H S GRTDKGV +
Sbjct: 13 IRLVVAYDGAGFHGFARQDGLR-TVQATLEETL--TRML-STPIEVHGS--GRTDKGVHA 66
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
QV+ L G + V VL R LP D+ + T
Sbjct: 67 RAQVVHFDL------------PYGPPAER--------MVYVLRRRLPADVIPLWADQVDT 106
Query: 214 DFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFC 257
F ARFS + + Y+Y +R L + AM A +G HDF +FC
Sbjct: 107 GFHARFSVVRKTYRYLLYRGAAPNLFLYRFSWHVPGVLAVEAMREAAVHLLGRHDFTSFC 166
Query: 258 KMDAANVHNYKRHVTSFEISPCYISF-EGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A+ + V S I F E AI++ GS FL + VR +V L +GQG
Sbjct: 167 ----ASATPQEDKVRSL----YRIDFVESPNRLAIEVEGSGFLQYMVRIIVGTLVKVGQG 218
Query: 317 LESIDVIESLL 327
E D I ++L
Sbjct: 219 REEADRIPAIL 229
>gi|423619896|ref|ZP_17595727.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD115]
gi|401250584|gb|EJR56878.1| tRNA pseudouridine synthase A 2 [Bacillus cereus VD115]
Length = 245
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 122/283 (43%), Gaps = 56/283 (19%)
Query: 88 HHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRT 147
H++K L + Y G R+ G+ GN + T++ +I + + +V KE C RT
Sbjct: 2 HNYK----LTIQYDGARYKGWQRLGNNDNTIQGKIESVISE---MVG--KEIEIIGCSRT 52
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D GV ++ QV +N K E+ +E ++ + LN+ LP DI +
Sbjct: 53 DAGVHALNQV------ANFKS------------DEKLVEHKVK--KYLNQYLPNDISITN 92
Query: 208 WSPAPTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEH 251
P F AR++ ++ Y Y W E LN+ +M+ A K VG H
Sbjct: 93 VEEVPDRFHARYNSKAKTYLYKIWNEEHTNPFMRKHSMHVNKKLNVESMKKAAKHLVGSH 152
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
DF F + + R V E+S E I++ G+ FL + VR +V L
Sbjct: 153 DFTAFSNAKSKK-KSMVREVYMLEVS------EEAGFVQIRVSGNGFLHNMVRKIVGALI 205
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
+G G + I ++L+ ++ Q N +A L L+S +F
Sbjct: 206 EVGLGQLDAEAILNILEE---KQRNQINCLAEASGLYLESIEF 245
>gi|29831498|ref|NP_826132.1| tRNA pseudouridine synthase A [Streptomyces avermitilis MA-4680]
gi|38258718|sp|Q82DM1.1|TRUA_STRAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|29608614|dbj|BAC72667.1| putative pseudouridine synthase [Streptomyces avermitilis MA-4680]
Length = 285
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 108/260 (41%), Gaps = 50/260 (19%)
Query: 82 MSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHY 141
MS + F R V L + Y G F G+A TV+ EI AL V E+ Y
Sbjct: 1 MSDEVQPGFVR-VRLDLSYDGTEFSGWAKQAAGRRTVQGEIEDALRT----VTRSGETTY 55
Query: 142 --SRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVL 199
+ GRTD GV + GQV + L GE E Q E R+ R L
Sbjct: 56 ELTVAGRTDAGVHARGQVAHVDL-------------PGELWAEHQ---EKLLKRLAGR-L 98
Query: 200 PKDIRVIGWSPAPTDFSARFSCISREYKY----------------FFWRE-NLNLSAMES 242
PKD+RV + AP+ F+ARFS I R Y Y W + L++ AM
Sbjct: 99 PKDVRVWSLTEAPSGFNARFSAIWRRYAYRVTDNTGGVDPLLRSHVLWHDWPLDVDAMNE 158
Query: 243 AGKKFVGEHDFRNFC-KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWH 301
A ++ VGEHDF +C K + A + ++ I+ +CA AF +
Sbjct: 159 AARRLVGEHDFAAYCKKREGATTIRTLQELSLVRGDDGVIT---ATVCA-----DAFCHN 210
Query: 302 QVRCMVAVLFMIGQGLESID 321
VR ++ L +G G D
Sbjct: 211 MVRSLIGALLFVGDGHRGPD 230
>gi|398342282|ref|ZP_10526985.1| pseudouridylate synthase [Leptospira inadai serovar Lyme str. 10]
Length = 277
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 109/243 (44%), Gaps = 53/243 (21%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
AL + Y G FYG+ + PT+++EI KAL + K + GRTD GV +
Sbjct: 11 ALLLEYDGGCFYGYQTQ-RQTPTIQNEIEKALA-----ILLGKPTRIYGAGRTDTGVHAR 64
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
G ++ +S I+E + ++ LN + + ++G SP P +
Sbjct: 65 GMIVNFKTKSKIRELSR-------------------FLLGLNALTDPGLSLLGISPVPEN 105
Query: 215 FSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFCK 258
F+++FSC +REY+Y F+++ +++S + + GEHDFR+ K
Sbjct: 106 FNSQFSCTAREYEYLLLNSKIPRPIWKNRVFWYQHRIDVSRLRQELELLKGEHDFRSLAK 165
Query: 259 MDAANVHNYKRHV-----TSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
A ++ N K + TS + SP E L +I+ + FL + +R + L I
Sbjct: 166 --ATSMRNRKTTIRVIYDTSLKESP-----EEPGLYRFRIKANGFLHNMIRILTGTLLEI 218
Query: 314 GQG 316
G
Sbjct: 219 ATG 221
>gi|449092858|ref|YP_007425349.1| tRNA pseudouridine synthase A [Bacillus subtilis XF-1]
gi|449026773|gb|AGE62012.1| tRNA pseudouridine synthase A [Bacillus subtilis XF-1]
Length = 247
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 115/276 (41%), Gaps = 55/276 (19%)
Query: 98 VMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
+ Y G F G+ ++P TV+ E+ KAL +L K GRTD GV +
Sbjct: 7 ISYDGHLFNGY----QVQPGKRTVQDELEKALA---VLHKSKDRIPVVSSGRTDSGVHAA 59
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQVI +I +A LN +LP DI V A
Sbjct: 60 GQVIHFDTPLSIPAERWPHA--------------------LNALLPDDIAVKQAEIADDG 99
Query: 215 FSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFCK 258
F ARFS + +EY+YF + E LN+ M A K +G HDF +FC
Sbjct: 100 FHARFSAVKKEYRYFVYTEKHPDVFKRHYAYHFSYRLNVQDMREAAKHLIGTHDFTSFC- 158
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
AA + T +E+ + +G Q+ +I GS FL++ VR + L G G
Sbjct: 159 --AAKTEVQDKVRTIYELDWTETA-DGLQM---RITGSGFLYNMVRIIAGTLLDAGIGKI 212
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
S D ++S+L+ R+ AP L L + +D
Sbjct: 213 SPDEVKSMLEAKD--REAAGRTAPGHGLYLWNVYYD 246
>gi|282906560|ref|ZP_06314408.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282329459|gb|EFB58980.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
Btn1260]
Length = 264
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 115/294 (39%), Gaps = 53/294 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRIH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTDLNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQQRDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLHQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLH 371
+ + LL++ RK AP L L+ D + D G+D+++H
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIH 259
>gi|452854208|ref|YP_007495891.1| pseudouridylate synthase I [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452078468|emb|CCP20218.1| pseudouridylate synthase I [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 247
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 118/280 (42%), Gaps = 55/280 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
V + Y G F G+ ++P TV+SE+ KAL + D + YS GRTD
Sbjct: 3 VKCTIAYDGHLFNGY----QVQPGKRTVQSELEKAL--AVIHKTDGRVPVYS-SGRTDSD 55
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQVI + ++ E+ + LN +LP DI V
Sbjct: 56 VHAAGQVI--------------HFDTPLSIPAEK------WPFALNALLPDDIAVKTAEI 95
Query: 211 APTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFR 254
A F ARFS + +EY+YF + E LN+ M A + VG HDF
Sbjct: 96 ADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHFAYPLNVQKMREASRHLVGTHDFT 155
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+FC D A V + R + + + E ++I G+ FL++ VR + L G
Sbjct: 156 SFCAADTA-VQDKVRTIYELDWT------ETGDGLQMRITGNGFLYNMVRIIAGTLLDTG 208
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G S D ++++L+ R+ AP L L S +D
Sbjct: 209 AGKFSPDDVKAMLEAKD--REAAGRTAPGHGLYLWSVCYD 246
>gi|49484433|ref|YP_041657.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257423704|ref|ZP_05600133.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
55/2053]
gi|257426382|ref|ZP_05602784.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
65-1322]
gi|257429022|ref|ZP_05605409.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
68-397]
gi|257431668|ref|ZP_05608031.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
E1410]
gi|257434628|ref|ZP_05610679.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M876]
gi|282902120|ref|ZP_06310013.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C160]
gi|282909528|ref|ZP_06317341.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282911780|ref|ZP_06319576.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282915068|ref|ZP_06322845.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M899]
gi|282925699|ref|ZP_06333347.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C101]
gi|283958992|ref|ZP_06376435.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293497472|ref|ZP_06665326.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
58-424]
gi|293511047|ref|ZP_06669744.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M809]
gi|293549653|ref|ZP_06672325.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M1015]
gi|295428801|ref|ZP_06821425.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297589714|ref|ZP_06948355.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus MN8]
gi|384866865|ref|YP_005747061.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
TCH60]
gi|415685160|ref|ZP_11450128.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CGS00]
gi|417888246|ref|ZP_12532360.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21195]
gi|418564180|ref|ZP_13128603.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21264]
gi|418580178|ref|ZP_13144264.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418595461|ref|ZP_13159073.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21342]
gi|418601892|ref|ZP_13165307.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21345]
gi|418890017|ref|ZP_13444143.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1176]
gi|418895867|ref|ZP_13449946.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418898805|ref|ZP_13452869.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418907188|ref|ZP_13461206.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG149]
gi|418915344|ref|ZP_13469309.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1267]
gi|418921085|ref|ZP_13475009.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418983165|ref|ZP_13530868.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418983994|ref|ZP_13531689.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1500]
gi|56749728|sp|Q6GEL6.1|TRUA_STAAR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|49242562|emb|CAG41283.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus MRSA252]
gi|257272722|gb|EEV04824.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
55/2053]
gi|257276013|gb|EEV07464.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279503|gb|EEV10090.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
68-397]
gi|257282547|gb|EEV12679.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
E1410]
gi|257285224|gb|EEV15340.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M876]
gi|282312528|gb|EFB42932.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C101]
gi|282320789|gb|EFB51123.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M899]
gi|282323476|gb|EFB53792.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282326638|gb|EFB56938.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282596579|gb|EFC01538.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C160]
gi|283789551|gb|EFC28376.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290918700|gb|EFD95776.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M1015]
gi|291096403|gb|EFE26661.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
58-424]
gi|291466034|gb|EFF08563.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
M809]
gi|295127150|gb|EFG56792.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|297578225|gb|EFH96938.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus MN8]
gi|312437370|gb|ADQ76441.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193148|gb|EFU23548.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CGS00]
gi|341856079|gb|EGS96922.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21195]
gi|371976888|gb|EHO94173.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21264]
gi|374397218|gb|EHQ68433.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21345]
gi|374401304|gb|EHQ72379.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21342]
gi|377702321|gb|EHT26644.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377707590|gb|EHT31882.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377709593|gb|EHT33845.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377713370|gb|EHT37578.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377737188|gb|EHT61198.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377739208|gb|EHT63214.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377753171|gb|EHT77088.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1267]
gi|377760018|gb|EHT83897.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG149]
gi|377764458|gb|EHT88310.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC341D]
Length = 264
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 115/294 (39%), Gaps = 53/294 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRIH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTDLNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQQRDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLH 371
+ + LL++ RK AP L L+ D + D G+D+++H
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIH 259
>gi|312385729|gb|EFR30155.1| hypothetical protein AND_00413 [Anopheles darlingi]
Length = 443
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 127/314 (40%), Gaps = 58/314 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL----VADKKESHYSRCGR 146
+R + + Y G ++G + T+E ++ +A+ K + ++ + R R
Sbjct: 103 RRKSVILLGYSGVDYFGMQRNPGTR-TIEEDLLRAMLKQEWINDEGFRQPQQIQFQRAAR 161
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+ QV++I L N+ V LN LP IRV
Sbjct: 162 TDKGVSAAVQVVSIKLPDNLD------------------------VAALNGELPPQIRVY 197
Query: 207 GWSPAPTDFSARFSCISREYKYFFW--------RENLNLSAMESAGKK----------FV 248
F+++ +C +R Y Y ++L++ + + ++
Sbjct: 198 AVKRVTKGFNSKTNCDARTYTYTLPTIAFAANDEKDLDILTYRAPADRLQRVNEVLALYL 257
Query: 249 GEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGN--QLCAIKIRGSAFLWHQVRCM 306
G +F NF + KR++ FE ++ +G + I+I+G +F+ HQ+R M
Sbjct: 258 GTKNFHNFTSRKEFIDPSVKRYIMEFECGTPFVP-DGTTAEFATIRIKGQSFMLHQIRKM 316
Query: 307 VAVLFMIGQGLESIDVIESLL--DTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDA 364
V + + +GL D+IE + GIP AP + LVL +D D
Sbjct: 317 VGLTLAVVRGLSQADIIEKAFGQERYGIP------TAPGLGLVLSRIHYDKYNKRYGEDG 370
Query: 365 GHDLRLHLRNECQV 378
H++ + E Q+
Sbjct: 371 CHEMLDFEKEEAQI 384
>gi|224542274|ref|ZP_03682813.1| hypothetical protein CATMIT_01449 [Catenibacterium mitsuokai DSM
15897]
gi|224524816|gb|EEF93921.1| tRNA pseudouridine synthase A [Catenibacterium mitsuokai DSM 15897]
Length = 245
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 115/272 (42%), Gaps = 51/272 (18%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
V Y G FYG+ + + TV+ EI KA+ K +E GRTD GV +VGQV
Sbjct: 7 VTYDGTHFYGWQIQPD-KRTVQEEIQKAIYKI-----THEEVTIHSSGRTDAGVHAVGQV 60
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
+ I E ++R LN LP DI + F A
Sbjct: 61 FHFDINKEIPEKQ--------------------WIRALNNFLPDDIYIKDSFIVDESFHA 100
Query: 218 RFSCISREYKY-------------FFWREN--LNLSAMESAGKKFVGEHDFRNFCKMDAA 262
R+S +EY+Y + ++ N L++ AM K F+GEHDF +FC +
Sbjct: 101 RYSAKKKEYRYLVSTKPYNPIERLYVYQHNRSLDIEAMRECAKIFLGEHDFASFCVFNGL 160
Query: 263 NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322
+ R + + +I E + + ++ G+ F + VR + L +G + +
Sbjct: 161 G--DTIRVIETIDIQ------EKDGIVTMRFIGNGFRRYMVRLITGALIQVGSHWRTKEF 212
Query: 323 IESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+E LL++ G +K + PE L LQ ++
Sbjct: 213 VEDLLNSKG-KKKCLFKAKPE-GLYLQEVYYE 242
>gi|374988975|ref|YP_004964470.1| tRNA pseudouridine synthase A [Streptomyces bingchenggensis BCW-1]
gi|297159627|gb|ADI09339.1| tRNA pseudouridine synthase A [Streptomyces bingchenggensis BCW-1]
Length = 292
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 105/255 (41%), Gaps = 50/255 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
V L + Y G F G+A + TV+ E+ AL K + + D E + GRTD GV
Sbjct: 12 VRLNLSYDGTDFSGWAKQRGRDTVRTVQGELESAL-KVVMRMQDPVE--LTVAGRTDAGV 68
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV + + E + E E +R L LP DIRV A
Sbjct: 69 HARGQVAHV--------------DLPEPIWAEHHEK---LLRRLAGRLPHDIRVWSVGEA 111
Query: 212 PTDFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFR 254
P F+ARFS I R Y Y W + L++ AM A +K +GEHDF
Sbjct: 112 PPGFNARFSAIWRRYVYRVVDHPGGVDPLLRGHVLWHDWPLDVDAMNEAAQKLLGEHDFA 171
Query: 255 NFCKM--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFM 312
+CK A + +R S+E P + + +R AF + VR +V L
Sbjct: 172 AYCKKRDGATTIRTLQR--LSWERGP-------DGIITATVRADAFCHNMVRSLVGALLF 222
Query: 313 IGQGLESIDVIESLL 327
+G G D +L
Sbjct: 223 VGDGHRPADWPAKVL 237
>gi|406677534|ref|ZP_11084716.1| tRNA pseudouridine synthase A [Aeromonas veronii AMC35]
gi|404624547|gb|EKB21381.1| tRNA pseudouridine synthase A [Aeromonas veronii AMC35]
Length = 269
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 112/251 (44%), Gaps = 51/251 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
+AL + Y G R++G+ + +V++E+ AL + +A+ S +C GRTD GV
Sbjct: 3 IALGIEYDGSRYFGWQRQREVI-SVQAELETALSR----IANHPVS--IQCAGRTDAGVH 55
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ GQVI + N A T+ LN LP DI V
Sbjct: 56 ATGQVIHF-------DTEANRAEGAWTLG-------------LNSNLPPDIAVRWVKQVD 95
Query: 213 TDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNF 256
F ARFS +R Y+Y + N ++ M AG+ +GEHDF F
Sbjct: 96 ESFHARFSATARRYRYVIYNHNYRPAILGSGVSHYHETIDAELMHQAGQSLLGEHDFSTF 155
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
+ A + R+VT C +S +G + + IR +AFL H VR + L ++GQG
Sbjct: 156 -RAVACQSNTPWRNVTHL----C-VSRQGPYIV-LDIRANAFLHHMVRNITGSLLLVGQG 208
Query: 317 LESIDVIESLL 327
L+ ++ I +L
Sbjct: 209 LKPVEWIAEVL 219
>gi|424851615|ref|ZP_18276012.1| tRNA pseudouridine synthase A [Rhodococcus opacus PD630]
gi|356666280|gb|EHI46351.1| tRNA pseudouridine synthase A [Rhodococcus opacus PD630]
Length = 270
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 111/277 (40%), Gaps = 54/277 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A + TV EI + +L + + GRTD GV + G
Sbjct: 3 LDIAYDGTDFSGWARQNGLR-TVCGEI-----EEKLGAVLRTSLQLTVAGRTDAGVHATG 56
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + +D VR L R LPKD+R+ + AP F
Sbjct: 57 QVAHV-----------------DVPLDAVPDDPSRLVRRLARFLPKDVRIKQIAFAPEHF 99
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y + + L+L M +A +G HDF FCK
Sbjct: 100 DARFSAMRRHYEYRLTSAAYGADPLRARDTVSYPKVLDLELMRAASATLLGLHDFAAFCK 159
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A V + +R F+ +G+ A + AF W VR +V + +G+G
Sbjct: 160 RREGATTVRDLQR----FDWER-----DGDVFTAF-VSADAFCWSMVRSLVGAVLAVGEG 209
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+D IE LL R +AP L L D+
Sbjct: 210 RRDLDWIEGLLREKS--RSSSILVAPAHGLSLVRVDY 244
>gi|332982675|ref|YP_004464116.1| tRNA pseudouridine synthase A [Mahella australiensis 50-1 BON]
gi|332700353|gb|AEE97294.1| tRNA pseudouridine synthase A [Mahella australiensis 50-1 BON]
Length = 245
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 104/243 (42%), Gaps = 49/243 (20%)
Query: 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDK 149
+R + L + Y G + G+ N T++ + +A+E + S GRTD+
Sbjct: 1 MERNIKLTLQYDGTAYAGWQYQKN-ALTIQQVVEEAIESL-----TGQHSTVIAAGRTDR 54
Query: 150 GVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS 209
GV ++GQV SNI ++ LN VLP+DIRVI
Sbjct: 55 GVHALGQVTNFKTESNIPTDR--------------------WLYALNAVLPEDIRVIDAQ 94
Query: 210 PAPTDFSARFSCISREYKYFFWR----------------ENLNLSAMESAGKKFVGEHDF 253
F ARF + Y+Y W L+ AM+ A FVG HDF
Sbjct: 95 DVLPSFHARFDAKGKLYRYIIWNAPYSSALLRNFSLHVARPLDADAMKRAALYFVGTHDF 154
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
+F + + V + R++ ++IS I EG ++ +I I G FL++ VR MV L +
Sbjct: 155 SSF-QASGSTVRDTVRNI--WDIS---IQTEG-KMISISISGDGFLYNMVRIMVGTLIDV 207
Query: 314 GQG 316
G G
Sbjct: 208 GIG 210
>gi|291533595|emb|CBL06708.1| pseudouridylate synthase I [Megamonas hypermegale ART12/1]
Length = 256
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 111/287 (38%), Gaps = 67/287 (23%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNM---EPTVESEIFKALEKTRLLVADKKESHYSRCGRT 147
+R + L + Y G ++GF + + +E +FK + L A GRT
Sbjct: 13 RRNIKLTLSYDGTNYHGFQRQTKVVAVQNVLEGALFKLFGDSIELAA---------AGRT 63
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D GV ++GQV+ + I N VR NR+LP DI ++
Sbjct: 64 DAGVHAIGQVVNFFTDGTIPIQNV--------------------VRAGNRLLPDDIVLLK 103
Query: 208 WSPAPTDFSARFSCISREYKY--------------FFWREN--LNLSAMESAGKKFVGEH 251
A DFSA S S+ Y Y F+W N LNL M+ A K GEH
Sbjct: 104 AEEADRDFSALHSVKSKIYIYKVFENELADPFMSRFYWHVNKKLNLEDMQEALKYIEGEH 163
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEG-----NQLCAIKIRGSAFLWHQVRCM 306
DF +F R + SP +E N + K GS FL+H VR +
Sbjct: 164 DFSSF------------RSAGGNDTSPIREIYEASCTKENNVYTFKFWGSGFLYHMVRNI 211
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ ++ IG G + +++ R MAP L LQ +
Sbjct: 212 MGLMINIGLGRVDKHEVPKIIEAKN--RALAGKMAPANGLYLQKVYY 256
>gi|383639942|ref|ZP_09952348.1| tRNA pseudouridine synthase A [Streptomyces chartreusis NRRL 12338]
Length = 284
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 99/251 (39%), Gaps = 44/251 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G F G+A TV+ EI AL R + + + GRTD GV +
Sbjct: 12 VRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDAL---RTVTRSGETYELTVAGRTDAGVHA 68
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + L +E E ++ L LP+D+RV AP+
Sbjct: 69 RGQVAHVDL-----------------PREVWAEHNQKLLKRLAGRLPRDVRVWALREAPS 111
Query: 214 DFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFRNF 256
F+ARFS I R Y Y W + L++ AM A ++ +GEHDF +
Sbjct: 112 GFNARFSAIWRRYAYRVTDNPGGVDPLLRNHVLWHDWPLDVDAMNEAARRLLGEHDFAAY 171
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
CK + T + + + + +R AF + VR ++ L +G G
Sbjct: 172 CK-------KREGATTIRTLQELRLVKGDDGIITATVRADAFCHNMVRSLIGALLFVGDG 224
Query: 317 LESIDVIESLL 327
D +L
Sbjct: 225 HRPPDWPAKVL 235
>gi|15594358|ref|NP_212146.1| tRNA pseudouridine synthase A [Borrelia burgdorferi B31]
gi|3915171|sp|P70830.2|TRUA_BORBU RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|2687883|gb|AAC66394.1| tRNA pseudouridine synthase A [Borrelia burgdorferi B31]
Length = 246
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 113/275 (41%), Gaps = 54/275 (19%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G ++GF +PTV+ EI KAL K +KK+ GRTDKGV + Q+
Sbjct: 8 IAYDGSIYHGFQIQPT-KPTVQGEIEKALMKI-----NKKKVKIHSSGRTDKGVHAKKQI 61
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD-IRVIGWSPAPTDFS 216
I ++ NI+ N A LN +L K+ I+++ F
Sbjct: 62 ITFDIKINIQLNNLKKA--------------------LNAILLKNSIKILKLRYVKNSFH 101
Query: 217 ARFSCISREY--------KYFFW--------RENLNLSAMESAGKKFVGEHDFRNF-CKM 259
RFS R+Y Y+ W + L++S + K +G+HDF F C
Sbjct: 102 PRFSAQKRKYSYCILNSDNYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIK 161
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
D + + F+ YI FE I GS+FLW VR ++ + I ES
Sbjct: 162 DKSKSKFRHIYFAKFKKRGKYIIFE--------IIGSSFLWKMVRSIIGTMLDIEIKNES 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
I E++L + R AP L L+ ++
Sbjct: 214 ISTFETILKSKN--RNLARTTAPANALFLERVYYE 246
>gi|418315644|ref|ZP_12927101.1| tRNA pseudouridine synthase A, partial [Staphylococcus aureus
subsp. aureus 21340]
gi|365243084|gb|EHM83775.1| tRNA pseudouridine synthase A, partial [Staphylococcus aureus
subsp. aureus 21340]
Length = 266
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 116/300 (38%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
I + LL++ RK A L L+ D + D G+D+++H + Q
Sbjct: 210 HEISDVPKLLESKN--RKNVPFTATAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|290958122|ref|YP_003489304.1| tRNA-pseudouridine synthase [Streptomyces scabiei 87.22]
gi|260647648|emb|CBG70753.1| putative tRNA-pseudouridine synthase [Streptomyces scabiei 87.22]
Length = 287
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 98/245 (40%), Gaps = 44/245 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G F G+A TV+ EI AL R + + + GRTD GV +
Sbjct: 12 VRLDLSYDGSEFSGWAKQAGGRRTVQGEIEDAL---RTVTRSGETYELTVAGRTDAGVHA 68
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + E V E E + R+ R LP+D+RV AP+
Sbjct: 69 RGQVAHV--------------DLPEAVWREHHEKLLK--RLAGR-LPRDVRVWALREAPS 111
Query: 214 DFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFRNF 256
F+ARFS I R Y Y W + L++ AM A + +GEHDF +
Sbjct: 112 GFNARFSAIWRRYAYRVTDNPGGVDPLLRGHVLWHDWPLDVDAMNEAARLLLGEHDFAAY 171
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
CK + T + + + + +R AF + VR ++ L +G G
Sbjct: 172 CK-------RREGATTIRTLQELSLVRGDDGIVTATVRADAFCHNMVRSLIGALLFVGDG 224
Query: 317 LESID 321
D
Sbjct: 225 HRGAD 229
>gi|297564067|ref|YP_003683040.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848516|gb|ADH70534.1| tRNA pseudouridine synthase A [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 279
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 99/245 (40%), Gaps = 46/245 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L V Y G F G+A+ TV+ E+ AL + L E + GRTD GV +
Sbjct: 8 VRLDVAYDGTDFSGWAAQPGRR-TVQGELEAALARVLRL----PEVSLTCAGRTDAGVHA 62
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV + + E S GE V +R L VLPKD+RV AP
Sbjct: 63 RGQVAQADIPARTWE------SEGERV-----------LRRLAGVLPKDVRVRAARLAPP 105
Query: 214 DFSARFSCISREYKY----------------FFW-RENLNLSAMESAGKKFVGEHDFRNF 256
F ARFS + R Y Y W R L++ M +A ++ VGEHDF F
Sbjct: 106 GFDARFSPLFRRYLYRVSDAPYGVDPLLRRDVLWHRSPLDVDRMNAAAERLVGEHDFAAF 165
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
CK + T E+ + L I+ AF + VR +V L +G G
Sbjct: 166 CK-------RREGATTIRELLRLEWTRVDEHLLHGTIQADAFCHNMVRALVGALLAVGDG 218
Query: 317 LESID 321
D
Sbjct: 219 RRDAD 223
>gi|432333341|ref|ZP_19585128.1| tRNA pseudouridine synthase TruA [Rhodococcus wratislaviensis IFP
2016]
gi|430779746|gb|ELB94882.1| tRNA pseudouridine synthase TruA [Rhodococcus wratislaviensis IFP
2016]
Length = 270
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 111/277 (40%), Gaps = 54/277 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A + TV EI + +L + + GRTD GV + G
Sbjct: 3 LDIAYDGTDFSGWARQNGLR-TVCGEI-----EEKLGAVLRAPLQLTVAGRTDAGVHATG 56
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + +D VR L R LPKD+R+ + AP F
Sbjct: 57 QVAHV-----------------DVPLDAVPDDPSRLVRRLARFLPKDVRIKQIAFAPEHF 99
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y + + L+L M +A +G HDF FCK
Sbjct: 100 DARFSAMRRHYEYRLTAAAYGADPLRARDTVSYPKVLDLELMRAASATLLGLHDFAAFCK 159
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A V + +R F+ +G+ A + AF W VR +V + +G+G
Sbjct: 160 RREGATTVRDLQR----FD-----WERDGDVFTAF-VSADAFCWSMVRSLVGAVLAVGEG 209
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+D IE LL R +AP L L D+
Sbjct: 210 RRDLDWIEGLLREKS--RSSSILVAPAHGLSLVRVDY 244
>gi|332293112|ref|YP_004431721.1| Pseudouridine synthase I, TruA, alpha/beta domain-containing
protein [Krokinobacter sp. 4H-3-7-5]
gi|332171198|gb|AEE20453.1| Pseudouridine synthase I, TruA, alpha/beta domain protein
[Krokinobacter sp. 4H-3-7-5]
Length = 259
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 118/257 (45%), Gaps = 44/257 (17%)
Query: 93 YVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVS 152
Y LK+ Y G R++G+ ++ TVE + +E+T V D+K GRTD VS
Sbjct: 7 YYLLKIQYLGFRYHGWQKQPDVL-TVE----RMMERTFSYVLDRKNFKLLASGRTDAKVS 61
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAP 212
+ + ++L N++ + E ++++LN LP+DIR + +
Sbjct: 62 ANVAYVELFL---------NDSPLPEE----------GFLKLLNNNLPQDIRCLEITQVD 102
Query: 213 TDFSARFSCISREYKYFF-WRE---------------NLNLSAMESAGKKFVGEHDFRNF 256
F+ + I++EY Y F + E +L++ M+ A + F GEHDFR++
Sbjct: 103 KKFNVMDAPIAKEYVYLFSYGEKNHPFAAPYMINIAGSLDIELMKEAARLFEGEHDFRSY 162
Query: 257 CKMDAANVHNYKRHVTSFEISPCYI---SFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
+++S I P + +F + A ++ G F HQ+R M+ +LF I
Sbjct: 163 AYKPNPETKTIG-NISSSLIEPNELYTANFFPKESFAFRVSGKGFKRHQIRLMMGMLFDI 221
Query: 314 GQGLESIDVIESLLDTN 330
G+G +D + LD +
Sbjct: 222 GEGKVDLDFFKKTLDAS 238
>gi|419961206|ref|ZP_14477215.1| tRNA pseudouridine synthase TruA [Rhodococcus opacus M213]
gi|414573527|gb|EKT84211.1| tRNA pseudouridine synthase TruA [Rhodococcus opacus M213]
Length = 270
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 111/277 (40%), Gaps = 54/277 (19%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G F G+A + TV EI + +L + + GRTD GV + G
Sbjct: 3 LDIAYDGTDFSGWARQNGLR-TVCGEI-----EEKLGAVLRTPLQLTVAGRTDAGVHATG 56
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV + + + +D VR L R LPKD+R+ + AP F
Sbjct: 57 QVAHV-----------------DVPLDTVPDDPSRLVRRLARFLPKDVRIKQIAFAPEHF 99
Query: 216 SARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEHDFRNFCK 258
ARFS + R Y+Y + + L+L M +A +G HDF FCK
Sbjct: 100 DARFSAMRRHYEYRLTSAAYGADPLRARDTVSYPKVLDLELMRAASATLLGLHDFAAFCK 159
Query: 259 M--DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A V + +R F+ +G+ A + AF W VR +V + +G+G
Sbjct: 160 RREGATTVRDLQR----FD-----WERDGDVFTAF-VSADAFCWSMVRSLVGAVLAVGEG 209
Query: 317 LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+D IE LL R +AP L L D+
Sbjct: 210 RRDLDWIEGLLREKS--RSSSILVAPAHGLSLVRVDY 244
>gi|387928079|ref|ZP_10130757.1| tRNA pseudouridine synthase A [Bacillus methanolicus PB1]
gi|387587665|gb|EIJ79987.1| tRNA pseudouridine synthase A [Bacillus methanolicus PB1]
Length = 245
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 107/250 (42%), Gaps = 54/250 (21%)
Query: 98 VMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
+ Y G +F G+ ++P T++ EI AL K + K S GRTD GV +
Sbjct: 8 ITYDGSQFSGY----QIQPGKRTIQGEIEVALSK----LHKGKRIKISASGRTDAGVHAK 59
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTD 214
GQVI ++++ + ++ +I LN +LP DI VI A
Sbjct: 60 GQVIHF------------DSALAISTEKWEI--------ALNSILPDDIAVIRVEKAAPG 99
Query: 215 FSARFSCISREYKYF---------FWRE-------NLNLSAMESAGKKFVGEHDFRNFCK 258
F ARF +EY+YF F R L+ +AM+ A K +G HDF +FC
Sbjct: 100 FHARFDAFGKEYRYFVHLSPKRDPFKRHYAYQFPYPLDYAAMKEALKYLIGTHDFTSFCS 159
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
+ + R + + F+ L + G+ FL++ VR + L +G G
Sbjct: 160 AK-TEIEDKVRTIEKIDF------FQEGDLLVFRFIGNGFLYNMVRILTGTLLEVGSGSR 212
Query: 319 SIDVIESLLD 328
S D I +L+
Sbjct: 213 SPDSIPDILE 222
>gi|375086470|ref|ZP_09732877.1| tRNA pseudouridine synthase A [Megamonas funiformis YIT 11815]
gi|374564815|gb|EHR36095.1| tRNA pseudouridine synthase A [Megamonas funiformis YIT 11815]
Length = 256
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 111/287 (38%), Gaps = 67/287 (23%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNM---EPTVESEIFKALEKTRLLVADKKESHYSRCGRT 147
+R + L + Y G ++GF + + +E +FK + L A GRT
Sbjct: 13 RRNIKLTLSYDGTNYHGFQRQTKVVAVQNVLEGALFKLFGDSIELAA---------AGRT 63
Query: 148 DKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIG 207
D GV ++GQV+ + I N VR NR+LP DI ++
Sbjct: 64 DAGVHAIGQVVNFFTDGTIPIQNV--------------------VRAGNRLLPDDIVLLK 103
Query: 208 WSPAPTDFSARFSCISREYKY--------------FFWREN--LNLSAMESAGKKFVGEH 251
A DFSA S S+ Y Y F+W N LNL M+ A K GEH
Sbjct: 104 AEEADRDFSALHSVKSKIYIYKVFENELADPFMSRFYWHVNKKLNLEDMQEALKYIEGEH 163
Query: 252 DFRNFCKMDAANVHNYKRHVTSFEISPCYISFEG-----NQLCAIKIRGSAFLWHQVRCM 306
DF +F R + SP +E N + K GS FL+H VR +
Sbjct: 164 DFSSF------------RSAGGNDTSPIREIYEASCTKENNVYTFKFWGSGFLYHMVRNI 211
Query: 307 VAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ ++ IG G + +++ R MAP L LQ +
Sbjct: 212 MGLMINIGLGRVDKHEVPKIIEARN--RALAGKMAPANGLYLQKVYY 256
>gi|295700767|ref|YP_003608660.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1002]
gi|295439980|gb|ADG19149.1| tRNA pseudouridine synthase A [Burkholderia sp. CCGE1002]
Length = 270
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 99/246 (40%), Gaps = 63/246 (25%)
Query: 94 VALKVMYFGQRFYGFASD--GNMEPTVESEIFKAL-EKTRLLVADKKESHYSRCGRTDKG 150
+AL V Y G F G+ S GN TV+ E+ +AL E TR V GRTD+G
Sbjct: 4 IALGVQYDGAAFAGWQSQPHGN---TVQDELERALREFTRTPVQTVV------AGRTDRG 54
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V +GQV+ E +I +VR N LPK I V P
Sbjct: 55 VHGLGQVVHF--------------------DTELDRVDISWVRGPNAFLPKTIGVQWAKP 94
Query: 211 APTDFSARFSCISREYKYFFW----------------RENLNLSAMESAGKKFVGEHDFR 254
P DF ARFS R Y Y + L++ AM SA + +GEHDF
Sbjct: 95 MPDDFHARFSAFERTYYYVLYVSPVRSPMLTTRAGWVHTPLDVDAMRSAAEHLIGEHDFS 154
Query: 255 NF----CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
F C+ H Y+ V +GN + R +AFL H VR ++ L
Sbjct: 155 AFRSSQCQSKTPFKHLYRIDVKR----------QGN-FVHFRFRANAFLHHMVRNVMGCL 203
Query: 311 FMIGQG 316
IG G
Sbjct: 204 IEIGSG 209
>gi|195941752|ref|ZP_03087134.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 80a]
gi|216264809|ref|ZP_03436801.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 156a]
gi|224533912|ref|ZP_03674497.1| tRNA pseudouridine synthase A [Borrelia burgdorferi CA-11.2a]
gi|215981282|gb|EEC22089.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 156a]
gi|224512915|gb|EEF83281.1| tRNA pseudouridine synthase A [Borrelia burgdorferi CA-11.2a]
Length = 246
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 113/275 (41%), Gaps = 54/275 (19%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G ++GF +PTV+ EI KAL K +KK+ GRTDKGV + Q+
Sbjct: 8 IAYDGSIYHGFQIQPT-KPTVQGEIEKALMKI-----NKKKVKIHSSGRTDKGVHAKRQI 61
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD-IRVIGWSPAPTDFS 216
I ++ NI+ N A LN +L K+ I+++ F
Sbjct: 62 ITFDIKINIQLNNLKKA--------------------LNAILLKNSIKILKLRYVKNSFH 101
Query: 217 ARFSCISREY--------KYFFW--------RENLNLSAMESAGKKFVGEHDFRNF-CKM 259
RFS R+Y Y+ W + L++S + K +G+HDF F C
Sbjct: 102 PRFSAQKRKYSYCILNSDNYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIK 161
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
D + + F+ YI FE I GS+FLW VR ++ + I ES
Sbjct: 162 DKSKFKFRHIYFAKFKKRGKYIIFE--------IIGSSFLWKMVRSIIGTMLDIEIKNES 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
I E++L + R AP L L+ ++
Sbjct: 214 ISTFETILKSKN--RNLARTTAPANALFLERVYYE 246
>gi|146296772|ref|YP_001180543.1| tRNA pseudouridine synthase A [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|166228689|sp|A4XKB7.1|TRUA_CALS8 RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|145410348|gb|ABP67352.1| tRNA pseudouridine synthase A [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 244
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 107/241 (44%), Gaps = 49/241 (20%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G ++G+ N + TV+ I A++K ++ + GRTD+GV
Sbjct: 2 RNILLTIEYDGTNYFGWQKQPNKK-TVQGVIEDAIKKIT-----GEDVNLVGSGRTDRGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
++GQ ++N K E +I E + LN VLP DI + +
Sbjct: 56 HALGQ------KANFK-------------TESKIPTE-KFPLALNSVLPNDISIKDAAEV 95
Query: 212 PTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRN 255
DFSAR+S + YKY + L+L +M+ + + F+GE+DF +
Sbjct: 96 SLDFSARYSAKQKTYKYLIYNHKFRPAILCNYVYHFPYELDLVSMQKSCEYFIGEYDFSS 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC + +R I CY++FE N AI I + FL++ R + + +G
Sbjct: 156 FCSSGSETNSKVRR------IFDCYLTFE-NDCIAIYITANGFLYNMARIIAGTILDVGV 208
Query: 316 G 316
G
Sbjct: 209 G 209
>gi|21283867|ref|NP_646955.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MW2]
gi|49487001|ref|YP_044222.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297209968|ref|ZP_06926364.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300910980|ref|ZP_07128430.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
TCH70]
gi|417900901|ref|ZP_12544779.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21266]
gi|418320244|ref|ZP_12931607.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VCU006]
gi|418645246|ref|ZP_13207373.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-55]
gi|418876074|ref|ZP_13430322.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418932523|ref|ZP_13486349.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418989250|ref|ZP_13536917.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1835]
gi|421149819|ref|ZP_15609476.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|443640549|ref|ZP_21124537.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus 21196]
gi|448742551|ref|ZP_21724491.1| tRNA pseudouridine synthase A [Staphylococcus aureus KT/314250]
gi|30913392|sp|Q8NVB7.1|TRUA_STAAW RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|56749699|sp|Q6G7A2.1|TRUA_STAAS RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|21205309|dbj|BAB96003.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
MW2]
gi|49245444|emb|CAG43921.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus MSSA476]
gi|296885641|gb|EFH24578.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300887960|gb|EFK83155.1| pseudouridylate synthase [Staphylococcus aureus subsp. aureus
TCH70]
gi|341846670|gb|EGS87861.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
21266]
gi|365227948|gb|EHM69135.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
VCU006]
gi|375023600|gb|EHS17050.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
IS-55]
gi|377715537|gb|EHT39726.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377767802|gb|EHT91588.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC93]
gi|377772697|gb|EHT96443.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
CIGC128]
gi|394329994|gb|EJE56091.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
str. Newbould 305]
gi|443405070|gb|ELS63682.1| tRNA pseudouridine(38-40) synthase [Staphylococcus aureus subsp.
aureus 21196]
gi|445546710|gb|ELY14996.1| tRNA pseudouridine synthase A [Staphylococcus aureus KT/314250]
Length = 267
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/300 (25%), Positives = 116/300 (38%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
I + LL++ RK A L L+ D + D G+D+++H + Q
Sbjct: 210 HEISDVPKLLESKN--RKNVPFTATAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|303288620|ref|XP_003063598.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454666|gb|EEH51971.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 261
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 102/236 (43%), Gaps = 46/236 (19%)
Query: 95 ALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSV 154
AL + Y G+ + GF TV+ E+ KAL T++ D+ GRTD GV +
Sbjct: 4 ALTLAYDGENYLGFQYQPRDAKTVQGEVEKAL--TKITGEDRDFLGIQASGRTDAGVHAR 61
Query: 155 GQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI-GWSPAPT 213
GQV+ Y R IED + R +N VLP+D+RV+ P P
Sbjct: 62 GQVLHFYAR-------------------RPIEDLARFQRSMNGVLPRDVRVMKAIRPHPA 102
Query: 214 DFSARFSCISREYKYF---------FWRENL--------NLSAMESAGKKFVGEHDFRNF 256
F ARF + + Y Y+ F R + ++ + + FVG DF F
Sbjct: 103 -FHARFHAVRKTYHYYLDTRLTMDPFLRRHALHVGWNPPDVEKLRRGAECFVGTRDFSAF 161
Query: 257 C--KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
D V + R + F+++ +G+ L +++ G+ F++ QVR MV +
Sbjct: 162 SNKPRDKTLVRDPVRTIYRFDVN----ELKGDGLLRLEVEGNGFMYKQVRNMVGAM 213
>gi|345323862|ref|XP_001510884.2| PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like
[Ornithorhynchus anatinus]
Length = 403
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 59/304 (19%)
Query: 91 KRYVALKVMYFGQRFYGFAS--DGNMEPTVESEIFKALEKTRLLVA----DKKESHYSRC 144
KR + L + Y G+ +YG + T+E ++ AL ++ + D K+ + RC
Sbjct: 56 KRKIVLLMAYSGKGYYGMQRHVGSSQFKTIEDDLVSALVQSGCIPENHGDDMKKMSFQRC 115
Query: 145 GRTDKGVSSVGQVIA--IYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD 202
RTDKGVS+ GQ+++ ++L NI E +N LP
Sbjct: 116 ARTDKGVSAAGQIVSLKVWLIDNILE-------------------------KINSHLPSQ 150
Query: 203 IRVIGWSPAPTDFSARFSCISREYKYFF------------WRENLNLS--AMESAGKK-- 246
IR++G F+++ +C +R Y Y E LS +E +
Sbjct: 151 IRILGLKRVTGGFNSKNNCTARTYFYMLPTLAFAHKDHDPQDETYRLSPEVLERVNRLLA 210
Query: 247 -FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRC 305
+ G H F NF + R++ ++ EG + IK++G +F+ HQ+R
Sbjct: 211 CYKGTHHFHNFTSQKGPKDASGMRYIMEMYCEEPFVR-EGMEFAVIKVKGQSFMMHQIRK 269
Query: 306 MVAVLFMIGQGLESIDVIESLL--DTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLD 363
M+ ++ I +G V+E + IP+ AP + LVL+ F+ D
Sbjct: 270 MIGLVIAIVKGYADQSVMERSWGEEKVDIPK------APGLGLVLERVHFESYNRRFGND 323
Query: 364 AGHD 367
H+
Sbjct: 324 GLHE 327
>gi|70906472|ref|NP_001020733.1| tRNA pseudouridine synthase A, mitochondrial isoform 3 [Mus
musculus]
gi|4455033|gb|AAD21041.1| pseudouridine synthase 1 [Mus musculus]
gi|11464734|gb|AAG35308.1| pseudouridine synthase 1 [Mus musculus]
gi|148688058|gb|EDL20005.1| pseudouridine synthase 1, isoform CRA_c [Mus musculus]
Length = 393
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 149/353 (42%), Gaps = 66/353 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLV----ADKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL + + D ++ + RC
Sbjct: 49 KRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRC 108
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + I+D +D + N LP IR
Sbjct: 109 ARTDKGVSAAGQVVSLKVW--------------------LIDDILDKI---NSHLPSHIR 145
Query: 205 VIGWSPAPTDFSARFSCISREYKYFF------------WRENLNLSA--MESAGKK---F 247
++G F+++ C +R Y Y E+ LSA ++ + +
Sbjct: 146 ILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACY 205
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R MV
Sbjct: 206 KGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVR-EGLEFAVIKVKGQSFMMHQIRKMV 264
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
++ I +G ES+L+ + K AP + LVL+ F+ D H+
Sbjct: 265 GLVVAIVKGYAP----ESVLERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHE 320
Query: 368 LRLHLRNECQVYQLQAAIFHEAL-------------LNCLPLAN--GLEIGSS 405
+ E +V + + + LN LP+ N G +G++
Sbjct: 321 PLDWTQEEGKVTAFKEQYIYPTIVSTERDERSMAQWLNTLPIHNFSGTALGAA 373
>gi|26354378|dbj|BAC40817.1| unnamed protein product [Mus musculus]
Length = 393
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 149/353 (42%), Gaps = 66/353 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLV----ADKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL + + D ++ + RC
Sbjct: 49 KRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRC 108
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + I+D +D + N LP IR
Sbjct: 109 ARTDKGVSAAGQVVSLKVW--------------------LIDDILDKI---NSHLPSHIR 145
Query: 205 VIGWSPAPTDFSARFSCISREYKYFF------------WRENLNLSA--MESAGKK---F 247
++G F+++ C +R Y Y E+ LSA ++ + +
Sbjct: 146 ILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACY 205
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R MV
Sbjct: 206 KGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVR-EGLEFAVIKVKGQSFMMHQIRKMV 264
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
++ I +G ES+L+ + K AP + LVL+ F+ D H+
Sbjct: 265 GLVVAIVKGYAP----ESVLERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHE 320
Query: 368 LRLHLRNECQVYQLQAAIFHEAL-------------LNCLPLAN--GLEIGSS 405
+ E +V + + + LN LP+ N G +G++
Sbjct: 321 PLDWTQEEGKVTAFKEQYIYPTIVSTERDERSMAQWLNTLPIHNFSGTALGAA 373
>gi|409357903|ref|ZP_11236271.1| tRNA pseudouridine synthase TruA [Dietzia alimentaria 72]
Length = 297
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 113/277 (40%), Gaps = 48/277 (17%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPT---VESEIFKALEKTRLLVADKKESHYSRCGRTD 148
R + L V Y G F G+A + +E+E+ K L L GRTD
Sbjct: 4 RRIRLDVAYDGTDFSGWARQPGLRTVCGVLEAELAKVLRNPVTLTV---------AGRTD 54
Query: 149 KGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGW 208
GV + R+ + + + A + + + + E +R L R+LP+D+ V+G
Sbjct: 55 AGV---------HARAQVCHFDVDPAWLDQRSLDGRPEA---LIRRLARLLPRDVTVMGA 102
Query: 209 SPAPTDFSARFSCISREYKYFF-----------------WRENLNLSAMESAGKKFVGEH 251
+F ARFS + R Y+Y W+ +L A+ +A ++ +G H
Sbjct: 103 RWVSDEFDARFSALRRHYEYRLTTAPWGAEPTRARDTAAWQRQADLEAVRAASQRLLGLH 162
Query: 252 DFRNFCKM--DAANVHNYKRHVTSFEISPCYISFEG-NQLCAIKIRGSAFLWHQVRCMVA 308
DF FC+ A + +R E G ++ + AF W VR +V
Sbjct: 163 DFAAFCRRREGATTIRELQRFDWRTEPDARGADAPGATEVWIASVSADAFCWSMVRSLVG 222
Query: 309 VLFMIGQGLESIDVIESLLD----TNGIPRKPQYNMA 341
+ +G+G ++D I LL ++ +P P +A
Sbjct: 223 GVMAVGEGRRNLDWISGLLGEKERSSAVPVAPACGLA 259
>gi|357146309|ref|XP_003573945.1| PREDICTED: LOW QUALITY PROTEIN: tRNA pseudouridine synthase A
1-like [Brachypodium distachyon]
Length = 333
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 122/281 (43%), Gaps = 58/281 (20%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G +F G+ + PT++ + KAL L D+KE GRTD GV + GQV
Sbjct: 58 IAYDGTKFKGWQYQPS-PPTIQCFLEKALIHITKL--DRKELCLVGAGRTDTGVHARGQV 114
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
A + C + S +N +LP DIRV S A +F A
Sbjct: 115 -AHFTTPFTYRCLDSFHS------------------AINGLLPPDIRVREISAARPEFHA 155
Query: 218 RFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKMDA 261
R S S+ Y Y + E LN AM A K FVGEHDF +F A
Sbjct: 156 RTSTKSKIYHYKIYNEAVMDPFHNNYAYHSAHRLNSHAMREAAKHFVGEHDFTSF----A 211
Query: 262 ANVHNYK-----RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQG 316
VHN + + + F+++ E + + +++ G+ FL+ QVR M A+L +G+
Sbjct: 212 NAVHNDRVRSPIKKILRFDVT------EMDAIIQLEVEGTGFLYRQVRNMAALLIQVGRE 265
Query: 317 LESIDVIESLLDTNGIPRKPQYN---MAPEIPLVLQSCDFD 354
+++ +++ RK +AP L L S ++D
Sbjct: 266 ALPPEIVPKIIEAKD--RKELAKVAFLAPPHGLYLMSVNYD 304
>gi|120436099|ref|YP_861785.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803]
gi|117578249|emb|CAL66718.1| tRNA pseudouridine synthase A [Gramella forsetii KT0803]
Length = 262
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 124/286 (43%), Gaps = 54/286 (18%)
Query: 93 YVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCG--RTDKG 150
Y +KV Y G R +G+ +++ TVE + K L ++ D K Y G RTD
Sbjct: 7 YYFIKVQYLGYRLHGWQKQPDVK-TVEGLVTKTL---GWVIPDAK---YKILGTSRTDAM 59
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
VS+ ++L E +ED ++ + N+ LP+DIR +
Sbjct: 60 VSAEESAFELFL------------------DHEPLEDLDGFLHLFNKNLPQDIRALSIEE 101
Query: 211 APTDFSARFSCISREYKYFF----------------WRENLNLSAMESAGKKFVGEHDFR 254
F+ ++EY Y F ++E+L++ M+ A K F G H+FR
Sbjct: 102 VDDKFNIIQHSKTKEYAYLFSIGDKFHPFCAPFMANFQEDLDVDRMKEAAKLFHGIHNFR 161
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYI---SFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
N+C + + ++R + E+ I +F + I S FL HQVR M+ L
Sbjct: 162 NYC-IRVSEKSTFEREMLKSELVENDIYTANFFPEKSYIFHIHASGFLRHQVRLMMGSLV 220
Query: 312 MIGQGLESIDVIESLLDTNGIPRKPQYNM---APEIPLVLQSCDFD 354
++G+G S+ IE L P PQ M AP L+L+ +F+
Sbjct: 221 LVGRGELSLQDIEDSLK----PDSPQLQMDYIAPASGLILRKIEFE 262
>gi|423016799|ref|ZP_17007520.1| tRNA pseudouridine synthase A [Achromobacter xylosoxidans AXX-A]
gi|338780147|gb|EGP44563.1| tRNA pseudouridine synthase A [Achromobacter xylosoxidans AXX-A]
Length = 268
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 82/201 (40%), Gaps = 45/201 (22%)
Query: 144 CGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDI 203
GRTD GV QV+ + +T+ E ++E +VR +N LP I
Sbjct: 45 AGRTDTGVHGAMQVVHL-----------------DTLLERRMES---WVRGVNAFLPPTI 84
Query: 204 RVIGWSPAPTDFSARFSCISREYKYFFWR----------------ENLNLSAMESAGKKF 247
V P DF ARFS +R Y Y WR L++ AM +A
Sbjct: 85 SVQWAKAVPDDFHARFSARARTYVYLLWRGRVRPALWAGRAGWCHHPLDVEAMRAAAGAL 144
Query: 248 VGEHDFRNFCKMDAANVHNYK-RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCM 306
+GEHDF +F H + H E E +R +AFL H VR +
Sbjct: 145 LGEHDFSSFRSSQCQAKHPVRVMHRLDIE--------ERGPFLVFTLRANAFLHHMVRNI 196
Query: 307 VAVLFMIGQGLESIDVIESLL 327
+ L +GQG ES+D + LL
Sbjct: 197 MGALLQVGQGRESVDWMAQLL 217
>gi|402836470|ref|ZP_10885006.1| tRNA pseudouridine(38-40) synthase [Mogibacterium sp. CM50]
gi|402270946|gb|EJU20202.1| tRNA pseudouridine(38-40) synthase [Mogibacterium sp. CM50]
Length = 282
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 111/279 (39%), Gaps = 46/279 (16%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ LK+ Y G F+G+ N TV+ E+ L R + + + RTD GV +
Sbjct: 20 ILLKIQYDGTNFHGWQKQPNGR-TVQGEVEHVL---RFIAG--YDVPVNGTSRTDAGVHA 73
Query: 154 VGQVIAIYLRSNI---KECNTNNASMGETVQEEQIEDEIDYVRVLNRV-LPKDIRVIGWS 209
+GQ + + + K N N G L R LP DIRVI
Sbjct: 74 LGQCASFNWDNPLPTNKLANIMNRRFG--------------AGGLGRSGLPGDIRVISAV 119
Query: 210 PAPTDFSARFSCISREYKYFFWREN--------------LNLSAMESAGKKFVGEHDFRN 255
P+DF ARFSC + YKY R L+ AM A K VG HDF +
Sbjct: 120 EVPSDFHARFSCHGKTYKYVVDRSGDIFERNYVYQYGYELDHEAMRVAAKAAVGTHDFAS 179
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F R T ++ IS EG + I++ G FL++ VR +V L IG
Sbjct: 180 F-----QTAGGIPRETTVRTVTDIAISDEGERTI-IRVTGDGFLYNMVRIIVGTLLEIGT 233
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G S +E ++ R AP L L+ FD
Sbjct: 234 GKRSASDMEQIVAD--ATRSSAGFTAPPQGLYLEQIYFD 270
>gi|319938474|ref|ZP_08012868.1| pseudouridylate synthase [Coprobacillus sp. 29_1]
gi|319806390|gb|EFW03057.1| pseudouridylate synthase [Coprobacillus sp. 29_1]
Length = 244
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 114/260 (43%), Gaps = 54/260 (20%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
V Y G RF+GF + E TV+ EI KAL+K +++E GRTD V +V QV
Sbjct: 7 VSYDGSRFHGFQVQ-DKERTVQGEIQKALKKI-----NEEEVIIHASGRTDAKVHAVHQV 60
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
+ ++ + R +N +P DI ++ S +F +
Sbjct: 61 FHFDTKKDLPPQQ--------------------WKRAINHFMPNDIYILDASYTDDEFHS 100
Query: 218 RFSCISREYKY---------------FFWRENLNLSAMESAGKKFVGEHDFRNFCKMDAA 262
R+S I +EY+Y F + L++ M A + F+GEH+F +FC D
Sbjct: 101 RYSAIKKEYRYLLSTKEYNPFDTNYVFQYGRQLDIELMREASQIFIGEHNFASFCSYDQY 160
Query: 263 NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322
N R + +F+I E + + ++ G+ F + VR +V + +G S ++
Sbjct: 161 G--NTIRTLYTFDI------VEEDGIITFRLIGNGFRRYMVRHLVGGIIQVGAKRISKEI 212
Query: 323 IESLLDTNGIPR-----KPQ 337
+ +L++ G + KPQ
Sbjct: 213 LSEMLESCGTKKCLFKAKPQ 232
>gi|409396274|ref|ZP_11247281.1| tRNA pseudouridine synthase A [Pseudomonas sp. Chol1]
gi|409119223|gb|EKM95609.1| tRNA pseudouridine synthase A [Pseudomonas sp. Chol1]
Length = 292
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 98/258 (37%), Gaps = 59/258 (22%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ GF P+V+ + AL + VA S GRTD V +
Sbjct: 20 IALGVEYKGSRYRGFQRQRAGVPSVQEALESALSR----VAGGHPVALSCAGRTDALVHA 75
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ +T E + +V N LP DI V P
Sbjct: 76 SGQVVHF-----------------DTSVERSMHA---WVMGANMNLPGDISVTWAKAMPA 115
Query: 214 DFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNF- 256
F ARFS ++R Y+Y + + L++ M A K FVG HDF F
Sbjct: 116 HFDARFSAMARRYRYVIYNDQIRPAHMAEEVTWNHRPLDIELMREAAKTFVGTHDFSAFR 175
Query: 257 -----CKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLF 311
K VH+ + + + I +R +AFL H VR VL
Sbjct: 176 ARQCQAKSPVKTVHHLQ-------------LLQHGKFIVIDVRANAFLHHMVRNFAGVLM 222
Query: 312 MIGQGLESIDVIESLLDT 329
IG G ++ + +L T
Sbjct: 223 TIGAGERPVEWAQQVLQT 240
>gi|386853422|ref|YP_006202707.1| TRNA pseudouridine synthase A [Borrelia garinii BgVir]
gi|365193456|gb|AEW68354.1| TruA [Borrelia garinii BgVir]
Length = 246
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 112/275 (40%), Gaps = 54/275 (19%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G ++GF +PT++ EI KAL K + KK YS GRTDKGV + Q+
Sbjct: 8 IAYDGSMYHGFQIQST-KPTIQGEIEKALMK----INKKKVKIYS-SGRTDKGVHAKKQI 61
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD-IRVIGWSPAPTDFS 216
I + NI+ N A LN +L K+ I+++ F
Sbjct: 62 ITFDININIQLNNLKKA--------------------LNAILLKNSIKILKLKYMKNSFH 101
Query: 217 ARFSCISREY--------KYFFW--------RENLNLSAMESAGKKFVGEHDFRNF-CKM 259
RF+ R+Y Y+ W + LN+S + K +G HDF F C
Sbjct: 102 PRFNAQKRKYSYRILNSNNYYPWEGYQAHYVNKKLNISNLNQMAKILIGNHDFTTFSCIK 161
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
D + ++ F+ YI FE I GS+FLW VR ++ + I ES
Sbjct: 162 DKSKSKFRHIYLAKFKKKGKYIIFE--------IIGSSFLWKMVRSIIGTMLDIEIKNES 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
I E++L + R AP L L ++
Sbjct: 214 ISTFETILKSKN--RNLARTTAPANALFLDKVYYE 246
>gi|345893728|ref|ZP_08844521.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 6_1_46AFAA]
gi|345045982|gb|EGW49880.1| tRNA pseudouridine synthase A [Desulfovibrio sp. 6_1_46AFAA]
Length = 257
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 113/282 (40%), Gaps = 54/282 (19%)
Query: 96 LKVMYFGQRFYGFA--SDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
L + Y G + G+ + PT++ E+ AL R+L H S GRTD GV +
Sbjct: 5 LLLAYLGTGYSGWQIQEKPSPPPTIQGELEAAL---RVLAGAPVRVHGS--GRTDAGVHA 59
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV C+ +A G + + R LN +LP +IR++ PA
Sbjct: 60 HGQV---------AHCDVPDAKAG-----------LRWQRSLNALLPPEIRILAAEPAAA 99
Query: 214 DFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNFC 257
DF AR + + Y Y FW+E L++ AM +A +GEHDF
Sbjct: 100 DFHARKDALRKTYVYQFWQERAFVPPQLAPFFWNCGPLDVEAMRAALPHLLGEHDFAGL- 158
Query: 258 KMDAANVHNYKRHVTSFEI---SPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+ ++ + R V E+ PC + + + FL VR M +L G
Sbjct: 159 QNAGTDMESTTRTVFRAELDIPPPCEFYPPHAPGLRLTVTANGFLKQMVRNMAGLLAACG 218
Query: 315 QGLESIDVIESLL---DTNGIPRKPQYNMAPEIPLVLQSCDF 353
QG + + LL D +P AP L L S ++
Sbjct: 219 QGKIRPENVPDLLAARDRRAVPSA----TAPAGGLALASVEY 256
>gi|74149634|dbj|BAE36440.1| unnamed protein product [Mus musculus]
Length = 393
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 149/353 (42%), Gaps = 66/353 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLV----ADKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL + + D ++ + RC
Sbjct: 49 KRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRC 108
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + I+D +D + N LP IR
Sbjct: 109 ARTDKGVSAAGQVVSLKVW--------------------LIDDILDKI---NSHLPSHIR 145
Query: 205 VIGWSPAPTDFSARFSCISREYKYFF------------WRENLNLSA--MESAGKK---F 247
++G F+++ C +R Y Y E+ LSA ++ + +
Sbjct: 146 ILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLACY 205
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R MV
Sbjct: 206 KGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVR-EGLEFAVIKVKGQSFMMHQIRKMV 264
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
++ I +G ES+L+ + K AP + LVL+ F+ D H+
Sbjct: 265 GLVVAIVKGYAP----ESVLERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGGDGLHE 320
Query: 368 LRLHLRNECQVYQLQAAIFHEAL-------------LNCLPLAN--GLEIGSS 405
+ E +V + + + LN LP+ N G +G++
Sbjct: 321 PLDWTQEEGKVTAFKEQYIYPTIVSTERDERSMAQWLNTLPINNFSGTALGAA 373
>gi|221217465|ref|ZP_03588936.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 72a]
gi|223889178|ref|ZP_03623767.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 64b]
gi|225549711|ref|ZP_03770676.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 118a]
gi|226321158|ref|ZP_03796699.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 29805]
gi|221192743|gb|EEE18959.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 72a]
gi|223885427|gb|EEF56528.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 64b]
gi|225369671|gb|EEG99119.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 118a]
gi|226233450|gb|EEH32190.1| tRNA pseudouridine synthase A [Borrelia burgdorferi 29805]
Length = 246
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 113/275 (41%), Gaps = 54/275 (19%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
+ Y G ++GF +PTV+ EI KAL K +KK+ GRTDKGV + Q+
Sbjct: 8 IAYDGSIYHGFQIQPT-KPTVQGEIEKALMKI-----NKKKVKIHSSGRTDKGVHAKRQI 61
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKD-IRVIGWSPAPTDFS 216
I ++ NI+ N A LN +L K+ I+++ F
Sbjct: 62 ITFDIKINIQLNNLKKA--------------------LNAILLKNSIKILKLRYVKNSFH 101
Query: 217 ARFSCISREY--------KYFFW--------RENLNLSAMESAGKKFVGEHDFRNF-CKM 259
RFS R+Y Y+ W + L++S + K +G+HDF F C
Sbjct: 102 PRFSAQKRKYSYCILNSDNYYPWEGYQAHYVNKKLSISNLNQMAKTLIGKHDFTTFSCIK 161
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
D + + F+ YI FE I GS+FLW VR ++ + I ES
Sbjct: 162 DKSKSKFRHIYFAKFKKRGKYIIFE--------IIGSSFLWKMVRSIIGTMLDIEIKNES 213
Query: 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
I E++L + R AP L L+ ++
Sbjct: 214 ISTFETILKSKN--RNLARTTAPANALFLERVYYE 246
>gi|256827610|ref|YP_003151569.1| pseudouridylate synthase I [Cryptobacterium curtum DSM 15641]
gi|256583753|gb|ACU94887.1| pseudouridylate synthase I [Cryptobacterium curtum DSM 15641]
Length = 273
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 116/278 (41%), Gaps = 43/278 (15%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL + Y G F+GFA TV+ + +AL LL ++E GRTD GV +
Sbjct: 4 IALLISYNGAPFHGFARQEGDLLTVQGSLEEALS---LLY--RREVETVCAGRTDTGVHA 58
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ + T +E +R LN + I + AP
Sbjct: 59 RGQVVTFEV----------------TPEELASHTPHSLIRSLNALTHDAIGIRQLRRAPD 102
Query: 214 DFSARFSCISREYKYFF--------------WRE----NLNLSAMESAGKKFVGEHDFRN 255
FSARF SR Y+YF W+ +L+ +AM +A VGEHDF++
Sbjct: 103 GFSARFDAKSRHYRYFISDGSVPPLVMRDFCWQVRGGVSLDANAMTAAAAYLVGEHDFKS 162
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
FC +A +R V S + I G+++ I I GS+FL VR + L +G+
Sbjct: 163 FCLAVSAAGKPTRREVLSLTVE--RIEVLGDEVVCIDIIGSSFLHSMVRTIAGTLVAVGR 220
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
GL + +L R AP LV D+
Sbjct: 221 GLRPPSWMAEVL--AACDRTAAGEKAPAAGLVFWDVDY 256
>gi|384263778|ref|YP_005419485.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387896668|ref|YP_006326964.1| pseudouridylate synthase [Bacillus amyloliquefaciens Y2]
gi|380497131|emb|CCG48169.1| tRNA pseudouridine synthase A [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387170778|gb|AFJ60239.1| pseudouridylate synthase [Bacillus amyloliquefaciens Y2]
Length = 247
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 118/280 (42%), Gaps = 55/280 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEP---TVESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
V + Y G F G+ ++P TV+SE+ KAL + D + YS GRTD
Sbjct: 3 VKCTIAYDGHLFNGY----QVQPGKRTVQSELEKAL--AVIHKTDGRVPVYS-SGRTDSD 55
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQVI + ++ E+ + LN +LP DI V
Sbjct: 56 VHAAGQVI--------------HFDTPLSIPAEK------WPFALNALLPDDIAVKTAEI 95
Query: 211 APTDFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFR 254
A F ARFS + +EY+YF + E LN+ M A + +G HDF
Sbjct: 96 ADDGFHARFSAVQKEYRYFVYTEKHPDVFKRHYAYHFAYPLNVQKMREASRHLIGTHDFT 155
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
+FC D A V + R + + + E ++I G+ FL++ VR + L G
Sbjct: 156 SFCAADTA-VQDKVRTIYELDWT------ETGDGLQMRITGNGFLYNMVRIIAGTLLDTG 208
Query: 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
G S D ++++L+ R+ AP L L S +D
Sbjct: 209 AGKFSPDDVKAMLEAKD--REAAGRTAPGHGLYLWSVCYD 246
>gi|384551005|ref|YP_005740257.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333855|gb|ADL24048.1| putative tRNA pseudouridine synthase [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 267
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/300 (25%), Positives = 116/300 (38%), Gaps = 53/300 (17%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRMH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTELNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQHRDPFQSGLKTFIPETLDLDKMNRAAQQFKGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR ++A L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLLAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQ 377
+ + LL++ RK AP L L+ D + D G+D+++H + Q
Sbjct: 210 HEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIHRKKSLQ 265
>gi|294497016|ref|YP_003560716.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551]
gi|295702381|ref|YP_003595456.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319]
gi|384049237|ref|YP_005497254.1| tRNA pseudouridine synthase A [Bacillus megaterium WSH-002]
gi|294346953|gb|ADE67282.1| tRNA pseudouridine synthase A [Bacillus megaterium QM B1551]
gi|294800040|gb|ADF37106.1| tRNA pseudouridine synthase A [Bacillus megaterium DSM 319]
gi|345446928|gb|AEN91945.1| tRNA pseudouridine synthase A [Bacillus megaterium WSH-002]
Length = 246
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 112/273 (41%), Gaps = 51/273 (18%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
V Y G F G+ N TV+ EI LEK + +KK Y+ GRTD V + GQV
Sbjct: 8 VAYDGTHFSGYQVQPNKR-TVQLEIEAVLEK----MHNKKVPIYA-SGRTDTNVHAQGQV 61
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
I NI C+ + + LN +LP DI + F A
Sbjct: 62 IHFDTNLNI-PCDK-------------------WKKALNSMLPDDIVMKNVCEVDAHFHA 101
Query: 218 RFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFCKMDA 261
R+ S+EY+Y + + L+ S M+ A +G HDF +FC
Sbjct: 102 RYDVTSKEYRYHILRGEDRNPFTRSYAYHYPYPLDYSKMKKAITYLLGTHDFTSFCSA-R 160
Query: 262 ANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESID 321
V + R + ++ +E N + GS FL++ VR +V L +GQG D
Sbjct: 161 TEVEDKIRTIYKIDM------YEENSQLVFRFVGSGFLYNMVRILVGTLLEVGQGRIEPD 214
Query: 322 VIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
I+ +L++ PR + AP L L +D
Sbjct: 215 AIKDILESKSRPRAGK--TAPSQGLYLWRVFYD 245
>gi|257083304|ref|ZP_05577665.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
gi|256991334|gb|EEU78636.1| tRNA pseudouridine synthase [Enterococcus faecalis Fly1]
Length = 246
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 48/254 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + L + Y G+R+ G+ GN E T++ +I L + + + E S GRTD G
Sbjct: 2 RNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQ---MTGEPIEIIGS--GRTDAGT 56
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV +N K ++ + + + LNR LP DI V +
Sbjct: 57 HARGQV------ANFKTTSSLTTT--------------EMLSFLNRYLPGDIVVKEVTEM 96
Query: 212 PTDFSARFSCISREYKYFFWR----------------ENLNLSAMESAGKKFVGEHDFRN 255
P F AR++ ++Y Y+ W + L+ ME A +K +G HDF
Sbjct: 97 PERFHARYNATGKQYSYYVWNSPIPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIG 156
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F + N T+ I I G ++ G+ FL VR +V L IG
Sbjct: 157 FSALKKTN------KSTTRTIEKITIERNG-EMLQFTFVGNGFLHKMVRILVGTLLEIGA 209
Query: 316 GLESIDVIESLLDT 329
G + + +I+ L T
Sbjct: 210 GTKELAIIDELFAT 223
>gi|258646072|ref|ZP_05733541.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
gi|260403447|gb|EEW96994.1| tRNA pseudouridine synthase A [Dialister invisus DSM 15470]
Length = 246
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 116/276 (42%), Gaps = 56/276 (20%)
Query: 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQV 157
V Y G R+ G+ E T++ ++ K L K +E GRTD GV S+GQV
Sbjct: 7 VQYDGTRYEGWQKQKRTEETIQGKLEKTLRKI-----TGEEVQVIGAGRTDAGVHSLGQV 61
Query: 158 IAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSA 217
+ +L+ K E++E LN LP DI + A F +
Sbjct: 62 VNFHLKGRWK--------------AEELET------ALNGDLPDDIALKHMETAEERFHS 101
Query: 218 RFSCISREYKY--------------FFWR--ENLNLSAMESAGKKFVGEHDFRNFC---K 258
RFS + + Y+Y F W+ ++L++ AM+ A +G +DF +FC K
Sbjct: 102 RFSTLEKTYRYRIRTSTEKNVFERRFVWQYGKSLDIEAMKKAAAFLIGTYDFTSFCGNKK 161
Query: 259 MDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLE 318
M + V R ++ E+ + I G FL VR +V L +G+G
Sbjct: 162 MKKSAV----RCISGIEMKEIKGELQ------IDFTGDGFLQGMVRILVGTLVEVGEGKR 211
Query: 319 SIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFD 354
+ I ++L++ R+ AP L+L S ++
Sbjct: 212 KAESIPAILESK--SREKAGFTAPPQGLILVSVRYE 245
>gi|291227559|ref|XP_002733751.1| PREDICTED: PseudoUridine Synthase family member (pus-1)-like
[Saccoglossus kowalevskii]
Length = 320
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 122/283 (43%), Gaps = 47/283 (16%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLV---AD-KKESHYSRCGR 146
KR V L + Y G+ + G + +E T+E ++ KA+ + AD ++ + RC R
Sbjct: 55 KRKVVLLLSYSGKGYMGMQRNKGVE-TIEGDLIKAIVTAGAVPQSHADIPQKMQFQRCAR 113
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+V QV++ +K +NA V +N LP IRVI
Sbjct: 114 TDKGVSAVRQVVS------LKMMLVDNA-----------------VEQINNSLPPSIRVI 150
Query: 207 GWSPAPTDFSARFSCISREYKYFFWRENL------NLSAMESAGKK-------FVGEHDF 253
+ F+A+ +C R Y Y L N + +K + G H+F
Sbjct: 151 TYKRTTGGFNAKNTCSHRTYSYLMPTFALSSNCNENYRVTDEVHQKAQDLLNCYKGTHNF 210
Query: 254 RNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313
NF A + R + +S ++ G + I I G +F+ HQ+R M+ ++ I
Sbjct: 211 HNFTSGKAFTEQSAMRFMRELNVSQAFVRC-GLEFVVITIIGQSFMIHQIRKMIGLVIAI 269
Query: 314 GQGLESIDVIESLLDTN--GIPRKPQYNMAPE-IPLVLQSCDF 353
+G+ ++ + IP+ P + E +P + SC+F
Sbjct: 270 IRGVAPKSTLDKCWEAGKMDIPKAPSLGLMLENVPEM--SCNF 310
>gi|302536280|ref|ZP_07288622.1| tRNA pseudouridine synthase A [Streptomyces sp. C]
gi|302445175|gb|EFL16991.1| tRNA pseudouridine synthase A [Streptomyces sp. C]
Length = 287
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 101/247 (40%), Gaps = 49/247 (19%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
V L + Y G+ F G+A + TV+ E+ AL+ L K+ + GRTD GV +
Sbjct: 12 VRLDLSYDGKDFSGWAKQRTLR-TVQGELESALQTVMRL---KEPVELTVAGRTDAGVHA 67
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV L +E E +R L LP DIRV + AP
Sbjct: 68 RGQVAQFDL-----------------AEEVWAEHHDKLLRRLAGRLPHDIRVWKAAEAPE 110
Query: 214 DFSARFSCISREYKY----------------FFWRE-NLNLSAMESAGKKFVGEHDFRNF 256
F+ARFS I R Y Y W + L++ AM A VGEHDF +
Sbjct: 111 GFNARFSAIWRRYAYRVGDHRAGVDPLRRGHVLWHQWPLDVDAMNEAAAALVGEHDFAAY 170
Query: 257 CKMDAANVHNYKRHVTSFEISPCYISFEGNQ--LCAIKIRGSAFLWHQVRCMVAVLFMIG 314
CK KR + + +S+E + + +R AF + VR +V L +G
Sbjct: 171 CK---------KREGATTIRTLQQLSWERGEDGVVTATVRADAFCHNMVRSLVGALLHVG 221
Query: 315 QGLESID 321
G ++
Sbjct: 222 DGHRPVE 228
>gi|17565126|ref|NP_507242.1| Protein PUS-1, isoform a [Caenorhabditis elegans]
gi|3880517|emb|CAA16518.1| Protein PUS-1, isoform a [Caenorhabditis elegans]
Length = 415
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 137/329 (41%), Gaps = 63/329 (19%)
Query: 53 VEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYVALKVMYFGQRFYGFASDG 112
VE+ T V++ +SGG KK + K + +Y A+ + Y G+++YG
Sbjct: 5 VEEQT--VDKLNHVQSGGVHKEPKKPRVKQA--------KY-AMLLGYQGKKYYGMQLQK 53
Query: 113 NMEPTVESEIFKALEKTRLLVADKKES----HYSRCGRTDKGVSSVGQVIAIYLRSNIKE 168
++ PT+ES++ +A+E + +KE + R RTD+ VS+ Q+ + L + +
Sbjct: 54 DL-PTIESKLLEAMETAGWITTAQKEKPFDFFFQRAARTDRAVSAARQMCGMQLPRDDAK 112
Query: 169 CNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKY 228
A +LN +LP DIRV G F + C R Y Y
Sbjct: 113 YQAEGAG------------------ILNNILPADIRVFGMRRTTNFFHPQKQCDHRTYSY 154
Query: 229 F----------------FWRENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVT 272
F L+ + S ++G H+F N+ A + + R++
Sbjct: 155 TCPSFVFAKPTELTNSSFRLSPETLAEVNSILSIYLGTHNFFNYTAKRAYDDMSSNRYII 214
Query: 273 SFEISPCYI-----SFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLL 327
SFE ++ E + I I+G +F+ HQ+R MV ++ + + L I+
Sbjct: 215 SFECKEPFLFRDDFRKEDVEFVQIVIKGQSFVLHQIRKMVGMVITVIRELHLKSSIQRSF 274
Query: 328 DTN--GIPRKPQYNMAPEIPLVLQSCDFD 354
+ IP MAP + L+L+ +D
Sbjct: 275 EGQRMDIP------MAPGLGLLLERTHYD 297
>gi|395799337|ref|ZP_10478618.1| tRNA pseudouridine synthase A [Pseudomonas sp. Ag1]
gi|421140449|ref|ZP_15600459.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens BBc6R8]
gi|395336441|gb|EJF68301.1| tRNA pseudouridine synthase A [Pseudomonas sp. Ag1]
gi|404508370|gb|EKA22330.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens BBc6R8]
Length = 274
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 106/272 (38%), Gaps = 69/272 (25%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + PTV+ + KAL K VAD S GRTD GV +
Sbjct: 9 IALGVEYKGSRYRGWQRQASGVPTVQETLEKALSK----VADSPVSLMC-AGRTDAGVHA 63
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ +T E ++ +V N LP D+ V P
Sbjct: 64 CGQVVHF-----------------DTQAERSMKA---WVMGANINLPHDVSVSWAKVMPA 103
Query: 214 DFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNF- 256
DF ARF I+R Y+Y + + L+ M A + VG HDF F
Sbjct: 104 DFHARFKAIARRYRYVIYNDQIRPAHLNEEITWNHRPLDAERMAEAAQHLVGIHDFSAFR 163
Query: 257 -----CKMDAANVHNYK--RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
K VH+ + RH ++ + IR AFL H VR + V
Sbjct: 164 AGQCQAKSPIKEVHHLRVTRH---------------GKMIVLDIRAGAFLHHMVRNIAGV 208
Query: 310 LFMIGQGLESIDVIESLLD-----TNGIPRKP 336
L IG G ++ +L+ T G+ P
Sbjct: 209 LMTIGTGERPVEWAREVLESRIRRTGGVTAHP 240
>gi|149063707|gb|EDM14030.1| pseudouridine synthase 1, isoform CRA_a [Rattus norvegicus]
Length = 393
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/352 (23%), Positives = 148/352 (42%), Gaps = 66/352 (18%)
Query: 91 KRYVALKVMYFGQRFYGFASD-GNME-PTVESEIFKALEKTRLLV----ADKKESHYSRC 144
KR + L + Y G+ ++G + G+ + T+E ++ AL + + D ++ + RC
Sbjct: 49 KRKIVLLMAYSGKGYHGMQRNLGSSQFRTIEDDLVSALVQAGCIPENHGTDMRKMSFQRC 108
Query: 145 GRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIR 204
RTDKGVS+ GQV+++ + I+D +D + N LP IR
Sbjct: 109 ARTDKGVSAAGQVVSLKVW--------------------LIDDILDKI---NSHLPSHIR 145
Query: 205 VIGWSPAPTDFSARFSCISREYKYFF------------WRENLNLSA--MESAGKK---F 247
++G F+++ C +R Y Y E+ LSA ++ + +
Sbjct: 146 ILGLKRVTGGFNSKNKCDARTYCYMLPTFAFAHKDRDVQDESYRLSAETLQQVNRLLGCY 205
Query: 248 VGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMV 307
G H+F NF + +R++ ++ EG + IK++G +F+ HQ+R MV
Sbjct: 206 KGTHNFHNFTSQKGPREPSARRYILEMYCEEPFVR-EGLEFAVIKVKGQSFMMHQIRKMV 264
Query: 308 AVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHD 367
++ I +G ES+L+ + K AP + LVL+ F+ D H+
Sbjct: 265 GLVVAIVKGYAP----ESVLERSWGEEKVDVPKAPGLGLVLERVHFEKYNQRFGSDGLHE 320
Query: 368 LRLHLRNECQVYQLQAAIFHEAL-------------LNCLPLAN--GLEIGS 404
+ E +V + + + LN LP+ N G +G+
Sbjct: 321 PLDWAQEEGKVTAFKEQYIYPTIVSTERDERSMAQWLNTLPIHNFSGTALGA 372
>gi|421740004|ref|ZP_16178285.1| pseudouridylate synthase I [Streptomyces sp. SM8]
gi|406691596|gb|EKC95336.1| pseudouridylate synthase I [Streptomyces sp. SM8]
Length = 295
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 109/261 (41%), Gaps = 49/261 (18%)
Query: 80 EKMSGTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKES 139
E+ G + H + V L + Y G+ F G+A TV+ EI AL + + ++
Sbjct: 9 ERRDGPEDGHVR--VRLDLSYDGRDFSGWAKQAAGRRTVQGEIEDALRT--VTRSGERTY 64
Query: 140 HYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVL 199
+ GRTD GV + GQV + L + + E E +R L L
Sbjct: 65 ELTVAGRTDSGVHARGQVAHVDLPAAVWE-----------------EHREKLLRRLAGRL 107
Query: 200 PKDIRVIGWSPAPTDFSARFSCISREYKY----------------FFWRE-NLNLSAMES 242
P D+R+ + AP F ARFS + R Y Y W + L++ AM +
Sbjct: 108 PHDVRIWRVAEAPAGFDARFSAVWRRYAYRVTDHPGGVDPLLRGHVLWHDWTLDVEAMNA 167
Query: 243 AGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQ--LCAIKIRGSAFLW 300
A +GEHDF +CK +R + + +S+E ++ + +R AF
Sbjct: 168 ASVALLGEHDFAAYCK---------RREGATTIRTLQELSWERDRDGIVTGTVRADAFCH 218
Query: 301 HQVRCMVAVLFMIGQGLESID 321
+ VR +V L +G G ++
Sbjct: 219 NMVRSLVGALLFVGDGHRPVE 239
>gi|350566940|ref|ZP_08935558.1| tRNA pseudouridine synthase A [Peptoniphilus indolicus ATCC 29427]
gi|348659960|gb|EGY76671.1| tRNA pseudouridine synthase A [Peptoniphilus indolicus ATCC 29427]
Length = 243
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 105/242 (43%), Gaps = 55/242 (22%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPT---VESEIFKALEKTRLLVADKKESHYSRCGRTDKG 150
+ LKV Y G ++GF M+P+ +E E+ KA+EK+ V K + +YS GRTD G
Sbjct: 3 ILLKVAYMGTNYHGF----QMQPSCVSIEEELKKAVEKS---VMHKVKLYYS--GRTDAG 53
Query: 151 VSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSP 210
V + GQ++ Y + ++ N R++N LP+DI V+
Sbjct: 54 VHAQGQMVNFYTDTKVEVKNM--------------------ARIINYHLPEDISVLDARR 93
Query: 211 APTDFSARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFR 254
DF ARFS + YKY + N+++ M+ A K +GE+D++
Sbjct: 94 VEEDFHARFSAKGKHYKYIVYNSFHRNPLYLNRAMHYNYNVDVDRMQRALDKIIGENDYK 153
Query: 255 NFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314
F A V + R + E+ + G +FL + VR +V IG
Sbjct: 154 AFMGRYAV-VKDTIRRIDKIEVKRV------GETIEFDFYGKSFLKNMVRIIVGTALEIG 206
Query: 315 QG 316
+G
Sbjct: 207 RG 208
>gi|152974254|ref|YP_001373771.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98]
gi|152023006|gb|ABS20776.1| tRNA pseudouridine synthase A [Bacillus cytotoxicus NVH 391-98]
Length = 260
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 119/277 (42%), Gaps = 56/277 (20%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G RF G+ GN + T++ +I L + ++ +E C RTD GV ++
Sbjct: 21 LTIQYDGGRFKGWQRLGNNDNTIQGKIESVLSE---MIG--QEIEIIGCSRTDAGVHALN 75
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV +N K V E+ +E ++ + LN+ LP DI + P F
Sbjct: 76 QV------ANFK------------VDEKLVETKVK--KYLNQYLPNDISITEVEQVPERF 115
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E LN+ M+ A F+G HDF F
Sbjct: 116 HARYNSKTKTYLYKIWNEEHTNPFMRKYSMHVPKKLNVENMKQAAHYFIGSHDFTAF--- 172
Query: 260 DAANVHNYKRHVTSFEISPCYI--SFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+N + K+ + + Y+ FE I++ G+ FL + VR +V L +G G
Sbjct: 173 --SNAKSKKKSM----VREIYVLDVFESEGFIQIRVSGNGFLHNMVRKIVGALIEVGLGQ 226
Query: 318 ESIDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
+ I +L+ ++ Q N +A L L+ DF
Sbjct: 227 LDAEAIPQILEA---KQRNQINCLADANGLYLEKVDF 260
>gi|376259837|ref|YP_005146557.1| pseudouridylate synthase I [Clostridium sp. BNL1100]
gi|373943831|gb|AEY64752.1| pseudouridylate synthase I [Clostridium sp. BNL1100]
Length = 245
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 116/273 (42%), Gaps = 50/273 (18%)
Query: 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGV 151
R + + + Y G ++G+ N + TV+ I KA+ K LL +E + C RTD GV
Sbjct: 2 RKIKITIEYDGTDYHGWQVQKNAK-TVQEVIQKAISK--LL---GEEVGVTGCSRTDVGV 55
Query: 152 SSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPA 211
+ GQV S I D+ Y +N +LP DI +
Sbjct: 56 HAYGQVAHFLTESQIPG------------------DKFSYA--INNLLPDDIVIKHSEEV 95
Query: 212 PTDFSARFSCISREYKYFFW----------------RENLNLSAMESAGKKFVGEHDFRN 255
+F AR+S ++Y+Y + R LN++ M+ A + F+GEHDF
Sbjct: 96 TGEFHARYSTKGKKYRYLIYNAPHPSAIMRNRSCHVRPKLNIAQMQKATEYFIGEHDFAA 155
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F + V + R + S E+S + + + I++ G+ FL++ VR + L +G
Sbjct: 156 F-QATGGQVRSTVREIYSMEVSE-----KEDNMIYIEVTGNGFLYNMVRIIAGTLIYVGM 209
Query: 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVL 348
G I SL+ G+ R AP L L
Sbjct: 210 GKLHESEIPSLI--AGLDRTKAGKTAPAQGLYL 240
>gi|33596565|ref|NP_884208.1| tRNA pseudouridine synthase A [Bordetella parapertussis 12822]
gi|33601118|ref|NP_888678.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica RB50]
gi|410472672|ref|YP_006895953.1| tRNA pseudouridine synthase A [Bordetella parapertussis Bpp5]
gi|412338699|ref|YP_006967454.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica 253]
gi|427815178|ref|ZP_18982242.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica 1289]
gi|42559762|sp|Q7U376.1|TRUA_BORPA RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|42559763|sp|Q7U386.1|TRUA_BORBR RecName: Full=tRNA pseudouridine synthase A; AltName: Full=tRNA
pseudouridine(38-40) synthase; AltName: Full=tRNA
pseudouridylate synthase I; AltName: Full=tRNA-uridine
isomerase I
gi|33566334|emb|CAE37247.1| tRNA pseudouridine synthase A [Bordetella parapertussis]
gi|33575553|emb|CAE32631.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica RB50]
gi|408442782|emb|CCJ49348.1| tRNA pseudouridine synthase A [Bordetella parapertussis Bpp5]
gi|408768533|emb|CCJ53299.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica 253]
gi|410566178|emb|CCN23738.1| tRNA pseudouridine synthase A [Bordetella bronchiseptica 1289]
Length = 270
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 110/252 (43%), Gaps = 51/252 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRC-GRTDKGVS 152
+AL + Y G + G+ + + TV+ ++ AL A + C GRTD GV
Sbjct: 4 IALGLAYDGSAWQGWQTQPHGV-TVQDQVEAALAS----FAGGGGPVATVCAGRTDTGVH 58
Query: 153 SVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWS-PA 211
+ QVI +L +++ Q DE +VR +N LP I V+ W+ P
Sbjct: 59 AAMQVI--HLDTDL-----------------QRRDE-SWVRGVNAFLPPSI-VVQWARPV 97
Query: 212 PTDFSARFSCISREYKYFFWR----------------ENLNLSAMESAGKKFVGEHDFRN 255
F ARFS SR Y Y WR + L++ AM +A + +GEHDF +
Sbjct: 98 SEAFHARFSARSRTYVYLLWRGRVRPALWAGRAGWAFQPLDVPAMRAAARTLLGEHDFSS 157
Query: 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315
F H R + +I E +R +AFL H VR ++ L +GQ
Sbjct: 158 FRSSQCQARHPV-RTLHRLDID------ERGAFLVFTLRANAFLHHMVRNLIGALLQVGQ 210
Query: 316 GLESIDVIESLL 327
G ES+ +++LL
Sbjct: 211 GRESVAWMDALL 222
>gi|386734334|ref|YP_006207515.1| tRNA pseudouridine synthase A 2 [Bacillus anthracis str. H9401]
gi|384384186|gb|AFH81847.1| tRNA pseudouridine synthase A 2 [Bacillus anthracis str. H9401]
Length = 250
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 116/275 (42%), Gaps = 52/275 (18%)
Query: 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVG 155
L + Y G RF G+ GN + T++ +I + + +V KE+ C RTD GV ++
Sbjct: 11 LTIQYDGARFKGWQRLGNNDNTIQGKIESVISE---MVG--KETEIIGCSRTDAGVHALN 65
Query: 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDF 215
QV N E + E +++ + LN+ LP DI + F
Sbjct: 66 QVA--------------NFQSDEKLVEHKVK------KYLNQYLPNDISITNVEEVHDRF 105
Query: 216 SARFSCISREYKYFFWRE----------------NLNLSAMESAGKKFVGEHDFRNFCKM 259
AR++ ++ Y Y W E LN+ +M+ A K VG HDF F
Sbjct: 106 HARYNSKAKTYLYKIWNEEHTNPFMRKYSMHVNKKLNVKSMKEAAKHLVGSHDFTAFSNA 165
Query: 260 DAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319
+ + R V S E+ E I++ G+ FL + VR +V L +G G +
Sbjct: 166 KSKK-KSMVREVYSLEV------MEEAGFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLA 218
Query: 320 IDVIESLLDTNGIPRKPQYN-MAPEIPLVLQSCDF 353
+ I +L+ ++ Q N +A L L++ +F
Sbjct: 219 AEAIPQILEA---KQRNQINCLAEASGLYLENVEF 250
>gi|338730830|ref|YP_004660222.1| tRNA pseudouridine synthase A [Thermotoga thermarum DSM 5069]
gi|335365181|gb|AEH51126.1| tRNA pseudouridine synthase A [Thermotoga thermarum DSM 5069]
Length = 260
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 120/283 (42%), Gaps = 59/283 (20%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALE---KTRLLVADKKESHYSRC-GR 146
K++ A+ + Y G F+GF ++ TV+ I +ALE KT++ V C GR
Sbjct: 2 KKFAAV-ISYDGNNFFGFQLQKDVR-TVQGVIEQALERIFKTKISVV---------CAGR 50
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TD GV +VGQVIA +I N NA LN LP D+ V
Sbjct: 51 TDTGVHAVGQVIAFDCPYDIPPENMKNA--------------------LNANLPDDVYVR 90
Query: 207 GWSPAPTDFSARFSCISREY---------------KYFFWRE-NLNLSAMESAGKKFVGE 250
P DF+ RF R Y KY++W L+++ M A K GE
Sbjct: 91 KVIEVPKDFNPRFCATRRIYHYFIYNGKTPNVFTRKYYWWFPYELDVNKMREAAKYLEGE 150
Query: 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVL 310
HDF+ F K + N + R + I + N L I++ G +FL VR +V L
Sbjct: 151 HDFKAFAKTE-GNEKSTVRTIYRIRI----LRLRKN-LILIRVEGRSFLRRMVRNIVGAL 204
Query: 311 FMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+G G+ I+ +L++ P AP L L S +F
Sbjct: 205 VKVGVGVWEPIKIKEILESRNRSLAPA--TAPAHGLYLYSVEF 245
>gi|254492043|ref|ZP_05105220.1| tRNA pseudouridine synthase A [Methylophaga thiooxidans DMS010]
gi|224462740|gb|EEF79012.1| tRNA pseudouridine synthase A [Methylophaga thiooxydans DMS010]
Length = 259
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 115/266 (43%), Gaps = 56/266 (21%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL + Y G F G+ + N TV+ E LEK +VA+ ++ GRTD GV +
Sbjct: 3 IALGIEYAGTDFCGWQNQPNTR-TVQGE----LEKAASVVANHSIDVFA-AGRTDTGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ QV+ + I E ++ +N LPKDI V P
Sbjct: 57 LNQVVHF--------------------DTDAIRSERGWLLGINANLPKDINVAWMKPVDD 96
Query: 214 DFSARFSCISREYKYF---------------FWREN-LNLSAMESAGKKFVGEHDFRNFC 257
+F+ARF+ I R Y+Y +W + L++ M++A + VG+HDF F
Sbjct: 97 EFNARFTAIKRRYRYLILNRLSRSAVHHNRMWWHHHPLDIERMQAAADQLVGKHDFSAF- 155
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLC-AIKIRGSAFLWHQVRCMVAVLFMIGQG 316
A+ + + + + I+ Q C A+ + +FL H VR +V V+ IG G
Sbjct: 156 ---RASECQARSPIKTLD----KITVRRQQDCIAVDVEAKSFLHHMVRNLVGVMAAIGDG 208
Query: 317 LESIDVIESLLDT-----NGIPRKPQ 337
+ +D +L + G+ PQ
Sbjct: 209 SKPVDWAGDVLRSVDRSQGGVTAPPQ 234
>gi|390949320|ref|YP_006413079.1| pseudouridylate synthase I [Thiocystis violascens DSM 198]
gi|390425889|gb|AFL72954.1| pseudouridylate synthase I [Thiocystis violascens DSM 198]
Length = 268
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 111/265 (41%), Gaps = 53/265 (20%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G F G+ + TV++ + AL + VAD S GRTD GV +
Sbjct: 6 IALGVEYDGSDFRGWQTQQPGVRTVQTCLEAALSR----VADHPVSVIC-AGRTDAGVHA 60
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ QV+ ET + + E +V N LP D+ V P
Sbjct: 61 LEQVVHF-----------------ETWAQRR---ERSWVLGANVNLPPDVAVRWAHPVEA 100
Query: 214 DFSARFSCISREYKY---------------FFW-RENLNLSAMESAGKKFVGEHDFRNFC 257
DF ARFS ++R Y+Y W E L+ + M+ A VGEHDF +F
Sbjct: 101 DFHARFSAMARHYRYRIMVQRARSPLRRDRAVWVHEPLDRARMQLAAAALVGEHDFSSF- 159
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
+ A + R + E+S E + L I++ + FL H VR + VL IG+G
Sbjct: 160 RAVACQAKSPVRRIHYLELS------EQDDLLTIRVGANGFLHHMVRNIAGVLIAIGRGD 213
Query: 318 ESIDVIESLLDTN-----GIPRKPQ 337
+D LL+ G+ PQ
Sbjct: 214 APVDWTRELLEVRDRTLAGVTAPPQ 238
>gi|312962053|ref|ZP_07776550.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens WH6]
gi|311283863|gb|EFQ62447.1| tRNA pseudouridine synthase A [Pseudomonas fluorescens WH6]
Length = 284
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 105/272 (38%), Gaps = 69/272 (25%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+AL V Y G R+ G+ + PTV+ + KAL K VAD S GRTD GV +
Sbjct: 19 IALGVEYKGSRYRGWQRQASGVPTVQETLEKALSK----VADSSVSLMC-AGRTDAGVHA 73
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
GQV+ +T E ++ +V N LP D+ V P
Sbjct: 74 CGQVVHF-----------------DTQAERTMKA---WVMGANINLPHDVSVSWAKVMPA 113
Query: 214 DFSARFSCISREYKYFFWREN----------------LNLSAMESAGKKFVGEHDFRNF- 256
F ARF I+R Y+Y + + L+ M A + VG HDF F
Sbjct: 114 HFHARFKAIARRYRYVIYNDQIRPAHLNEEITWNHRPLDAERMAEAAQHLVGVHDFSAFR 173
Query: 257 -----CKMDAANVHNYK--RHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAV 309
K VH+ + RH ++ + IR AFL H VR + V
Sbjct: 174 AGQCQAKSPIKEVHHLRVTRH---------------GKMIVLDIRAGAFLHHMVRNIAGV 218
Query: 310 LFMIGQGLESIDVIESLLD-----TNGIPRKP 336
L IG G +D +L+ T G+ P
Sbjct: 219 LMTIGTGERPVDWAREVLESRIRRTGGVTAHP 250
>gi|282920794|ref|ZP_06328512.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C427]
gi|282315209|gb|EFB45593.1| tRNA pseudouridine synthase A [Staphylococcus aureus subsp. aureus
C427]
Length = 264
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 115/294 (39%), Gaps = 53/294 (18%)
Query: 94 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSS 153
+ +++ Y G F GF N TV+ + K L++ K+ RTD+GV +
Sbjct: 3 ILVEIAYQGNNFLGFQIQQNGR-TVQQQFEKLLQRIH-----KRHVRIHPSSRTDRGVHA 56
Query: 154 VGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPT 213
+ Q NI A +NR LP DI V
Sbjct: 57 IQQYFHFDTDLNIPMSQWQYA--------------------MNRTLPDDIYVNNVVTVDD 96
Query: 214 DFSARFSCISREYKY----------------FFWRENLNLSAMESAGKKFVGEHDFRNFC 257
DF R+ C+ + Y+Y F E L+L M A ++F+G HDF FC
Sbjct: 97 DFHCRYDCVGKRYRYKVYQAQQRDPFQSGLKTFIPEPLDLDKMNRAAQQFIGTHDFTGFC 156
Query: 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGL 317
V + R + EI F+ + GS FL++ VR +VA L +G+G
Sbjct: 157 SQ-KTEVESKVRTLYQSEIVKTDDGFD------YIVTGSGFLYNMVRVLVAFLIEVGKGR 209
Query: 318 ESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLH 371
+ + LL++ RK AP L L+ D + D G+D+++H
Sbjct: 210 YEVSDVPKLLESKN--RKNVPFTAPAEGLYLEKIYLDENELLK--DFGNDIKIH 259
>gi|145355737|ref|XP_001422107.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582347|gb|ABP00424.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 308
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 117/286 (40%), Gaps = 51/286 (17%)
Query: 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLL----VADKKESHYSRCGR 146
KR A+ Y G + G + + T+E E+ A+ + + D + ++R R
Sbjct: 2 KRKCAVTFAYVGAGYAGMQRNPGVR-TIEGELEGAIARAGGISDANAGDFAKVQWTRAAR 60
Query: 147 TDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVI 206
TDKGVS+VGQV+A+ + + + V +N LP+ V
Sbjct: 61 TDKGVSAVGQVVALKM----------------------VLEPSGMVERINAALPERFEVF 98
Query: 207 GWSPAPTDFSARFSCISREYKYFF----WRENL--------------NLSAMESAGKKFV 248
G F+A+ C R Y+Y + NL S ++ K +
Sbjct: 99 GIDRVTGGFNAKTMCDRRRYEYVIPTRAFDPNLGAEGAAEAFAFTEETRSRVDGVLKNYC 158
Query: 249 GEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVA 308
G H+F N+ KR++ SFE S + EG Q ++ G +F+ HQ+R ++
Sbjct: 159 GTHNFHNYTVKVKPTDAQAKRYIISFECSAPF-EVEGEQFVRCQVVGQSFMLHQIRKLIG 217
Query: 309 VLFMIGQG-LESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353
+ + +G L D +LL +P MAPE+ L L C +
Sbjct: 218 TMLAVVRGELTEDDQKFALLTHEFVPTP----MAPELGLFLCECIY 259
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,108,130,042
Number of Sequences: 23463169
Number of extensions: 251441146
Number of successful extensions: 657243
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 4416
Number of HSP's that attempted gapping in prelim test: 643326
Number of HSP's gapped (non-prelim): 6561
length of query: 410
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 265
effective length of database: 8,957,035,862
effective search space: 2373614503430
effective search space used: 2373614503430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)