Query 015260
Match_columns 410
No_of_seqs 229 out of 1367
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:37:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015260.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015260hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2554 Pseudouridylate syntha 100.0 1.5E-89 3.4E-94 671.4 24.2 340 15-385 11-358 (425)
2 PRK14589 tRNA pseudouridine sy 100.0 3.1E-72 6.8E-77 545.8 30.7 259 93-390 2-260 (265)
3 COG0101 TruA Pseudouridylate s 100.0 4.9E-72 1.1E-76 543.2 26.7 235 92-361 2-252 (266)
4 cd02569 PseudoU_synth_ScPus3 P 100.0 2.2E-71 4.7E-76 537.9 27.2 255 96-353 1-256 (256)
5 PRK12434 tRNA pseudouridine sy 100.0 3.9E-71 8.4E-76 533.2 27.2 229 91-353 1-245 (245)
6 PRK00021 truA tRNA pseudouridi 100.0 3.7E-70 7.9E-75 525.9 28.4 228 91-353 1-244 (244)
7 PRK14588 tRNA pseudouridine sy 100.0 6.1E-70 1.3E-74 531.9 27.5 239 91-361 1-255 (272)
8 TIGR00071 hisT_truA pseudourid 100.0 3.1E-69 6.6E-74 514.6 26.8 222 92-348 1-227 (227)
9 PRK14586 tRNA pseudouridine sy 100.0 4.2E-69 9.1E-74 519.0 27.7 228 91-353 1-245 (245)
10 cd02866 PseudoU_synth_TruA_Arc 100.0 2.5E-69 5.5E-74 513.3 25.5 221 96-353 1-221 (221)
11 PRK14587 tRNA pseudouridine sy 100.0 7.6E-69 1.6E-73 519.2 28.7 247 93-390 2-248 (256)
12 cd02570 PseudoU_synth_EcTruA P 100.0 6.4E-69 1.4E-73 515.6 26.4 223 96-353 1-239 (239)
13 cd00497 PseudoU_synth_TruA_lik 100.0 6.2E-69 1.3E-73 511.6 25.5 224 98-353 1-224 (224)
14 cd02568 PseudoU_synth_PUS1_PUS 100.0 4.1E-69 8.9E-74 518.8 23.2 240 96-353 1-245 (245)
15 PLN03078 Putative tRNA pseudou 100.0 3.2E-65 6.9E-70 527.0 31.6 260 82-358 61-423 (513)
16 KOG2553 Pseudouridylate syntha 100.0 4.3E-57 9.2E-62 452.3 24.6 247 88-360 33-335 (416)
17 KOG4393 Predicted pseudouridyl 100.0 3.6E-42 7.8E-47 326.6 15.4 243 91-356 4-279 (295)
18 PF01416 PseudoU_synth_1: tRNA 99.9 6.8E-25 1.5E-29 184.3 -3.3 104 243-354 1-105 (105)
19 PF01416 PseudoU_synth_1: tRNA 98.1 2E-07 4.3E-12 78.1 -3.6 84 98-220 3-105 (105)
20 PF10105 DUF2344: Uncharacteri 96.1 0.069 1.5E-06 50.1 11.3 114 117-251 19-136 (187)
21 cd01291 PseudoU_synth PseudoU_ 90.2 0.7 1.5E-05 37.4 5.4 22 287-310 65-86 (87)
22 TIGR01213 conserved hypothetic 88.0 24 0.00051 37.0 15.9 160 115-299 184-350 (388)
23 PF01166 TSC22: TSC-22/dip/bun 85.1 1.5 3.1E-05 33.7 3.9 32 7-38 14-45 (59)
24 TIGR02449 conserved hypothetic 81.3 3.1 6.8E-05 32.7 4.6 33 10-42 3-35 (65)
25 PRK14554 putative pseudouridyl 78.6 44 0.00095 35.4 13.4 153 116-297 220-381 (422)
26 PF09006 Surfac_D-trimer: Lung 74.7 5.4 0.00012 29.2 3.8 24 16-39 1-24 (46)
27 PF14077 WD40_alt: Alternative 72.7 2.2 4.8E-05 31.2 1.4 22 15-36 12-33 (48)
28 PF01166 TSC22: TSC-22/dip/bun 72.0 4.5 9.8E-05 31.1 3.0 29 8-36 8-36 (59)
29 PF06005 DUF904: Protein of un 71.9 9.3 0.0002 30.5 5.0 30 6-35 17-53 (72)
30 PF07334 IFP_35_N: Interferon- 69.2 7.5 0.00016 31.5 3.9 28 9-36 2-29 (76)
31 PF04508 Pox_A_type_inc: Viral 69.1 6.2 0.00014 24.8 2.7 17 15-31 2-18 (23)
32 PF11336 DUF3138: Protein of u 64.1 7.9 0.00017 40.8 3.9 30 2-31 20-49 (514)
33 COG1258 Predicted pseudouridyl 61.2 1.4E+02 0.0031 31.3 12.3 157 115-300 190-356 (398)
34 PF04977 DivIC: Septum formati 61.2 18 0.00038 28.2 4.7 31 9-39 19-49 (80)
35 PF06698 DUF1192: Protein of u 59.8 13 0.00028 28.7 3.5 27 13-39 20-46 (59)
36 KOG4797 Transcriptional regula 57.6 24 0.00052 30.5 5.1 33 7-39 67-99 (123)
37 PF03980 Nnf1: Nnf1 ; InterPr 57.3 19 0.00042 30.3 4.6 32 8-39 74-105 (109)
38 PHA03155 hypothetical protein; 57.0 11 0.00024 32.7 3.0 27 13-39 7-33 (115)
39 PF09006 Surfac_D-trimer: Lung 56.4 26 0.00056 25.7 4.3 28 9-36 1-28 (46)
40 smart00338 BRLZ basic region l 55.5 27 0.00059 26.7 4.7 24 15-38 27-50 (65)
41 PF07716 bZIP_2: Basic region 55.3 23 0.00049 26.2 4.2 28 12-39 23-50 (54)
42 TIGR02894 DNA_bind_RsfA transc 55.1 19 0.00041 33.2 4.3 29 11-39 108-136 (161)
43 PRK00888 ftsB cell division pr 54.4 22 0.00048 30.3 4.4 31 9-39 29-59 (105)
44 PF10224 DUF2205: Predicted co 52.3 26 0.00057 28.6 4.3 28 9-36 25-52 (80)
45 PF05308 Mito_fiss_reg: Mitoch 51.5 16 0.00034 36.1 3.5 23 17-39 118-140 (253)
46 COG3937 Uncharacterized conser 49.6 20 0.00043 30.9 3.4 26 13-38 82-107 (108)
47 PF13935 Ead_Ea22: Ead/Ea22-li 49.3 23 0.00049 31.6 3.9 38 2-39 62-101 (139)
48 PF05812 Herpes_BLRF2: Herpesv 49.2 25 0.00055 30.8 4.0 26 14-39 3-28 (118)
49 PF08172 CASP_C: CASP C termin 48.4 27 0.00059 34.3 4.6 35 8-42 80-114 (248)
50 TIGR02209 ftsL_broad cell divi 46.7 41 0.00089 26.7 4.7 31 9-39 26-56 (85)
51 smart00338 BRLZ basic region l 46.3 35 0.00075 26.0 4.0 29 9-37 35-63 (65)
52 PF09340 NuA4: Histone acetylt 45.2 29 0.00063 28.2 3.6 26 14-39 2-27 (80)
53 KOG4797 Transcriptional regula 44.6 36 0.00078 29.5 4.1 29 8-36 61-89 (123)
54 PRK15422 septal ring assembly 43.9 51 0.0011 26.9 4.7 31 7-37 18-62 (79)
55 PF12808 Mto2_bdg: Micro-tubul 43.0 31 0.00068 25.9 3.2 23 17-39 25-47 (52)
56 PF02344 Myc-LZ: Myc leucine z 42.4 61 0.0013 22.0 4.1 25 11-35 5-29 (32)
57 PF11853 DUF3373: Protein of u 41.8 21 0.00046 38.4 2.9 24 15-38 32-55 (489)
58 PF06305 DUF1049: Protein of u 41.5 33 0.00071 26.1 3.3 23 11-33 45-67 (68)
59 COG5011 Uncharacterized protei 39.9 58 0.0013 31.2 5.1 74 120-213 23-100 (228)
60 PF04380 BMFP: Membrane fusoge 39.8 49 0.0011 26.7 4.1 25 11-35 54-78 (79)
61 PF00170 bZIP_1: bZIP transcri 39.6 75 0.0016 24.1 5.0 24 14-37 26-49 (64)
62 PHA03162 hypothetical protein; 38.9 37 0.0008 30.3 3.5 27 13-39 12-38 (135)
63 PF07106 TBPIP: Tat binding pr 38.8 54 0.0012 29.8 4.8 35 5-39 70-104 (169)
64 PF02370 M: M protein repeat; 38.6 35 0.00077 21.0 2.3 14 24-37 4-17 (21)
65 PF04977 DivIC: Septum formati 38.0 45 0.00098 25.8 3.6 25 9-33 26-50 (80)
66 PF09849 DUF2076: Uncharacteri 38.0 39 0.00084 33.3 3.9 28 8-35 49-76 (247)
67 PF06156 DUF972: Protein of un 37.9 55 0.0012 28.1 4.3 28 9-36 17-44 (107)
68 PRK10265 chaperone-modulator p 37.7 42 0.00092 28.2 3.6 24 16-39 73-96 (101)
69 COG1792 MreC Cell shape-determ 37.6 52 0.0011 32.9 4.8 28 12-39 81-108 (284)
70 PRK13182 racA polar chromosome 37.1 50 0.0011 30.8 4.3 22 13-34 124-145 (175)
71 PF07106 TBPIP: Tat binding pr 36.5 39 0.00084 30.7 3.4 34 5-39 78-111 (169)
72 PRK13169 DNA replication intia 36.2 62 0.0013 28.0 4.4 27 9-35 17-43 (110)
73 PRK13729 conjugal transfer pil 35.8 39 0.00084 36.3 3.7 25 14-38 97-121 (475)
74 PF03955 Adeno_PIX: Adenovirus 33.7 45 0.00099 28.8 3.1 35 5-39 74-108 (109)
75 PF14775 NYD-SP28_assoc: Sperm 33.2 71 0.0015 24.6 3.9 26 14-39 33-58 (60)
76 PF11471 Sugarporin_N: Maltopo 32.6 78 0.0017 24.4 4.0 28 11-38 29-56 (60)
77 PF06667 PspB: Phage shock pro 32.2 68 0.0015 25.9 3.7 30 10-39 38-67 (75)
78 PF04849 HAP1_N: HAP1 N-termin 32.0 52 0.0011 33.4 3.7 25 15-39 161-185 (306)
79 TIGR02976 phageshock_pspB phag 31.9 69 0.0015 25.8 3.7 29 11-39 39-67 (75)
80 COG2919 Septum formation initi 31.7 65 0.0014 27.8 3.9 30 7-36 57-86 (117)
81 TIGR03752 conj_TIGR03752 integ 30.8 65 0.0014 34.6 4.4 33 6-38 58-90 (472)
82 PF06005 DUF904: Protein of un 29.9 1.2E+02 0.0025 24.2 4.7 30 7-36 4-33 (72)
83 PRK09458 pspB phage shock prot 29.7 80 0.0017 25.6 3.7 30 10-39 38-67 (75)
84 PF11365 DUF3166: Protein of u 29.6 84 0.0018 26.6 4.0 29 14-42 15-43 (96)
85 PF07716 bZIP_2: Basic region 29.2 1.5E+02 0.0032 21.8 4.9 29 7-35 25-53 (54)
86 PF04728 LPP: Lipoprotein leuc 29.0 1.4E+02 0.0029 22.9 4.6 30 9-38 5-34 (56)
87 PF04102 SlyX: SlyX; InterPro 28.8 1.2E+02 0.0026 23.7 4.6 33 7-39 18-50 (69)
88 COG4026 Uncharacterized protei 28.4 81 0.0018 30.8 4.2 29 11-39 160-188 (290)
89 PRK00888 ftsB cell division pr 27.9 98 0.0021 26.3 4.3 29 7-35 34-62 (105)
90 PF00038 Filament: Intermediat 27.7 1E+02 0.0022 30.5 5.0 32 8-39 5-36 (312)
91 PF01486 K-box: K-box region; 27.6 90 0.0019 25.9 3.9 28 11-38 72-99 (100)
92 KOG0804 Cytoplasmic Zn-finger 27.3 1E+02 0.0022 33.0 5.0 8 52-59 463-470 (493)
93 COG2960 Uncharacterized protei 27.3 83 0.0018 26.9 3.6 23 9-31 68-90 (103)
94 PHA01750 hypothetical protein 27.0 1.4E+02 0.003 23.7 4.5 31 6-37 42-72 (75)
95 KOG4571 Activating transcripti 27.0 79 0.0017 31.9 4.0 28 12-39 246-273 (294)
96 PF08702 Fib_alpha: Fibrinogen 27.0 1.1E+02 0.0025 27.5 4.7 31 5-35 102-132 (146)
97 PF15372 DUF4600: Domain of un 26.9 79 0.0017 28.2 3.6 31 12-42 49-79 (129)
98 TIGR00219 mreC rod shape-deter 26.6 1E+02 0.0022 30.7 4.8 20 193-212 225-244 (283)
99 PF12709 Kinetocho_Slk19: Cent 26.3 1.1E+02 0.0024 25.5 4.0 30 10-39 45-74 (87)
100 KOG1853 LIS1-interacting prote 26.3 1.1E+02 0.0023 30.5 4.7 36 3-38 41-76 (333)
101 PF07061 Swi5: Swi5; InterPro 26.2 80 0.0017 25.9 3.2 22 17-38 3-24 (83)
102 PF11853 DUF3373: Protein of u 26.2 64 0.0014 34.9 3.4 24 14-38 25-48 (489)
103 KOG1655 Protein involved in va 26.0 1.1E+02 0.0024 29.2 4.6 35 6-40 18-52 (218)
104 KOG3856 Uncharacterized conser 26.0 1.2E+02 0.0026 26.9 4.5 30 10-39 13-42 (135)
105 PRK10884 SH3 domain-containing 25.5 1.2E+02 0.0027 28.9 4.9 29 11-39 122-150 (206)
106 KOG3335 Predicted coiled-coil 24.7 2.1E+02 0.0046 26.9 6.0 29 11-39 103-131 (181)
107 PTZ00464 SNF-7-like protein; P 24.4 1.4E+02 0.0029 28.8 5.0 34 6-39 17-50 (211)
108 PF12718 Tropomyosin_1: Tropom 24.4 1.4E+02 0.003 26.8 4.7 29 11-39 32-60 (143)
109 PF04380 BMFP: Membrane fusoge 24.3 86 0.0019 25.3 3.1 22 7-28 57-78 (79)
110 PF04899 MbeD_MobD: MbeD/MobD 24.2 92 0.002 24.8 3.2 20 18-37 46-65 (70)
111 PF10506 MCC-bdg_PDZ: PDZ doma 23.9 79 0.0017 25.0 2.7 27 17-43 1-27 (67)
112 COG3750 Uncharacterized protei 23.9 2.2E+02 0.0048 23.4 5.3 28 12-39 12-39 (85)
113 PF02183 HALZ: Homeobox associ 23.5 1.9E+02 0.004 21.0 4.4 28 11-38 9-36 (45)
114 PF00170 bZIP_1: bZIP transcri 23.5 2.2E+02 0.0049 21.5 5.2 31 8-38 27-57 (64)
115 PRK13922 rod shape-determining 23.3 1.2E+02 0.0027 29.5 4.7 19 193-211 224-242 (276)
116 PF04999 FtsL: Cell division p 23.2 1.6E+02 0.0034 24.1 4.6 30 10-39 38-67 (97)
117 PRK13169 DNA replication intia 23.1 1.7E+02 0.0037 25.3 4.8 33 7-39 22-54 (110)
118 PRK14127 cell division protein 23.1 1.1E+02 0.0025 26.3 3.8 26 14-39 37-62 (109)
119 COG3074 Uncharacterized protei 22.1 1.9E+02 0.004 23.3 4.4 31 7-37 18-62 (79)
120 PRK09413 IS2 repressor TnpA; R 21.9 1.6E+02 0.0034 25.3 4.5 28 11-38 75-102 (121)
121 PF04340 DUF484: Protein of un 21.9 1.5E+02 0.0033 28.1 4.8 33 6-38 39-71 (225)
122 PF10458 Val_tRNA-synt_C: Valy 21.8 1.5E+02 0.0033 22.7 4.0 27 13-39 3-29 (66)
123 COG5509 Uncharacterized small 21.8 1.4E+02 0.0031 23.2 3.6 26 14-39 25-50 (65)
124 PF09744 Jnk-SapK_ap_N: JNK_SA 21.7 1.7E+02 0.0037 26.9 4.8 30 10-39 85-114 (158)
125 PF08826 DMPK_coil: DMPK coile 21.7 2.6E+02 0.0056 21.7 5.1 27 12-38 30-56 (61)
126 PF13591 MerR_2: MerR HTH fami 21.6 96 0.0021 25.1 2.9 19 16-34 65-83 (84)
127 cd04785 HTH_CadR-PbrR-like Hel 21.0 2.1E+02 0.0046 24.6 5.2 34 9-42 81-114 (126)
128 cd07429 Cby_like Chibby, a nuc 20.8 1.3E+02 0.0029 26.0 3.7 26 12-37 70-95 (108)
129 PRK14127 cell division protein 20.8 1.9E+02 0.0041 25.0 4.6 29 11-39 41-69 (109)
130 PF12017 Tnp_P_element: Transp 20.7 1.4E+02 0.0031 29.1 4.4 30 10-39 14-43 (236)
131 PF10883 DUF2681: Protein of u 20.6 1.4E+02 0.0031 24.8 3.7 26 13-38 22-47 (87)
132 PF15070 GOLGA2L5: Putative go 20.5 1.3E+02 0.0029 33.5 4.6 33 7-39 36-68 (617)
133 PF09153 DUF1938: Domain of un 20.5 1.1E+02 0.0024 25.3 3.0 29 285-313 23-51 (86)
134 PF07061 Swi5: Swi5; InterPro 20.3 1.7E+02 0.0036 24.0 4.1 29 9-37 2-30 (83)
135 TIGR02338 gimC_beta prefoldin, 20.1 2.3E+02 0.005 23.9 5.1 35 5-39 65-99 (110)
No 1
>KOG2554 consensus Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-89 Score=671.42 Aligned_cols=340 Identities=41% Similarity=0.716 Sum_probs=288.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccCCCCCCccccccccccCCCCcccccccccccCCCCccccccceE
Q 015260 15 QLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESGGCKTGKKKVKEKMSGTLNHHFKRYV 94 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~v 94 (410)
+.+.|+.|+-||+..++..+.+.-. .. ++. ....++++. +++|+.+.|||+.+++|+|
T Consensus 11 ~~~~l~kr~~el~~~~~p~~~~~~~-------~~----~~~-------~~~~~~~~s----~~~kk~~~fdfs~~~kR~I 68 (425)
T KOG2554|consen 11 MKNILIKRAVELDNWNKPEKKQHIE-------NE----AKS-------KVSQSANTS----RKKKKKKRFDFSAHSKRHI 68 (425)
T ss_pred HHHHHHHHHHHhhccCCcccccchh-------hH----HHh-------hhchhhccc----cccccccccchhcccceEE
Confidence 6789999999999999865544221 10 000 000111111 1112235699999999999
Q ss_pred EEEEEEeCCCceeeeecCCCC-CcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccCcCC
Q 015260 95 ALKVMYFGQRFYGFASDGNME-PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNN 173 (410)
Q Consensus 95 aL~iaY~Gt~Y~G~q~Q~~~~-~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~~~ 173 (410)
||+|+|+||+|+|++.|+++. +|||+.|++||.+++| ++++++++|+|||||||||||+|||+|++++|.++.++...
T Consensus 69 AlkiaY~GW~Y~Gla~Qe~T~~~TIEg~l~eAL~kt~L-ies~~~~~ysRCGRTDKGVSAfgQviSl~lRS~~p~~~s~~ 147 (425)
T KOG2554|consen 69 ALKIAYLGWNYQGLAPQEHTNNPTIEGKLFEALKKTRL-IESRQTCNYSRCGRTDKGVSAFGQVISLVLRSRIPMPDSQR 147 (425)
T ss_pred EEEEEEeccccCceecCCCCCCcchHHHHHHHHHhhhc-ccCcccccccccCCcccchhhhhheeeeeeeccCCCchhhh
Confidence 999999999999999997654 5999999999999998 67899999999999999999999999999999987642211
Q ss_pred CCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCCCCCHHHHHHHHhhccceecc
Q 015260 174 ASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDF 253 (410)
Q Consensus 174 ~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~~LDie~M~~Aak~fvGtHDF 253 (410)
.+ . ...+..|++|+.+||++||+||||.+|+|||+.|+|||+|.+|+|+|+|+..+|||++|++||.+|+|+|||
T Consensus 148 ~~----~-~~a~~~Ei~Y~~mLN~vLP~dIRi~awapvp~~FsARFsC~~RtYrY~F~k~dLdI~~M~kAA~l~vGe~DF 222 (425)
T KOG2554|consen 148 DA----V-ATADSEEIPYVHMLNRVLPPDIRIVAWAPVPPTFSARFSCVQRTYRYYFPKKDLDIDRMSKAASLLVGEHDF 222 (425)
T ss_pred cc----c-cccccccccHHHHHhccCCCcceEEEEecCCCCccceeehhhceeeEeccCCCcCHHHHHHHHHHHhcchhh
Confidence 11 0 112346889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecCCCC-cccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCC
Q 015260 254 RNFCKMDAAN-VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI 332 (410)
Q Consensus 254 ~NF~k~~~~~-~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~~~~i~~lL~~~~~ 332 (410)
+||||+|..+ ++||.|+|.++.|..+.. -..+|+|+|.|++||||||||||++|++||||.+.|+.|.+|||.+++
T Consensus 223 rNFCK~D~~n~vtny~Rti~s~kV~~~~~---~~~my~ldi~g~AFLwHqVRcimaiL~liGq~~E~p~lI~dLldIek~ 299 (425)
T KOG2554|consen 223 RNFCKIDVSNGVTNYERTILSAKVEDVGQ---TPGMYYLDIQGSAFLWHQVRCIMAILFLIGQGLEQPSLISDLLDIEKN 299 (425)
T ss_pred hhhhhhcchhhhHHHHhhhheeeEEEcCC---CCceEEEEeechhhHHHHHHHHHHHHHHhccccCCchHHHHHHhcccC
Confidence 9999999877 588999999999987642 234999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCCeeeeeCCC--CCCCccccchhhHHHHHHHHHHH----HHHHHHHHH
Q 015260 333 PRKPQYNMAPEIPLVLQSCDF--DGLKFTCSLDAGHDLRLHLRNEC----QVYQLQAAI 385 (410)
Q Consensus 333 ~rk~~~~~AP~~gL~L~dv~Y--~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~a~i 385 (410)
|.+|+|.||...||+|+||.| ++++|..+.++.+...++++..| ..++..+++
T Consensus 300 P~kPqY~mA~~~PL~LydC~f~~e~~ew~~~~~sd~~a~~~l~~t~~~L~~~~q~~~~~ 358 (425)
T KOG2554|consen 300 PQKPQYTMASDYPLELYDCDFHRENVEWRHDTESDQIAPKILKITWENLVEHLQNGSAM 358 (425)
T ss_pred CCCceeeeccCCceEEEecCCCCccccccccccccccchhHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999 99999999998888888888876 344444433
No 2
>PRK14589 tRNA pseudouridine synthase ACD; Provisional
Probab=100.00 E-value=3.1e-72 Score=545.81 Aligned_cols=259 Identities=31% Similarity=0.534 Sum_probs=231.0
Q ss_pred eEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccCcC
Q 015260 93 YVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTN 172 (410)
Q Consensus 93 ~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~~ 172 (410)
+|+|.|+|+||+|+|||.||+ .+|||++|++||.+++++ .+.+++.+++|||||+||||++||+||++..
T Consensus 2 ~~~l~i~YdGt~y~G~Q~Q~~-~~TVq~~Le~aL~~~~~~-~~~~~~~i~~agRTDaGVHA~gqv~~f~~~~-------- 71 (265)
T PRK14589 2 RLAFRISYIGTRFFGSQYQPD-QRTVEGEFIAACRRLGLF-SDWREAGFALAGRTDRGVHARGQVLAFSTHK-------- 71 (265)
T ss_pred cEEEEEEEcCCCeeeeeeCCC-CCCHHHHHHHHHHHhhCc-cCCceeeEEEeccCCcCccccccEEEEEeCC--------
Confidence 689999999999999999998 589999999999999763 3346899999999999999999999998742
Q ss_pred CCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCCCCCHHHHHHHHhhccceec
Q 015260 173 NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252 (410)
Q Consensus 173 ~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~~LDie~M~~Aak~fvGtHD 252 (410)
+..+...||+.||+||+|+++.+||++|||||+|++|+|+|+|+..++|+++|++||+.|+|+||
T Consensus 72 ---------------~~~~~~~lN~~LP~dI~V~~~~~v~~~FhAR~~a~~R~Y~Y~i~~~~lD~~~m~~a~~~f~G~HD 136 (265)
T PRK14589 72 ---------------PERAVEALNGQLPPDIWCTGWAEVPESFHPRYDAISRTYRYYFSRPPSDINAMRDAAGEFIGTHD 136 (265)
T ss_pred ---------------hHHHHHHHHhhCCCCeEEEEEEEcCCCCCcccCCceeEEEEEEecCccHHHHHHHHHHHccCCcc
Confidence 12577899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCC
Q 015260 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI 332 (410)
Q Consensus 253 F~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~~~~i~~lL~~~~~ 332 (410)
|+|||+.+ .++++|+|.++++.. ..+++.|+|+|+||||||||+|||+|+.||+|.+++++|+++|+...
T Consensus 137 F~~F~~~~---~~~~vRtI~~i~v~~------~~~~~~~~i~G~~FL~~mVR~mVG~ll~vg~G~~~~~~i~~~L~~~~- 206 (265)
T PRK14589 137 FSCFARVE---GKSPVRTILRIRVFS------DGGFPVFEVTAQSFLWHMVRCMAGALLQIGEGEMEPDDIERLLSGPC- 206 (265)
T ss_pred HHHHhccC---CCCCeEEEEEEEEEE------eCCEEEEEEEechhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCcC-
Confidence 99999875 368899999999974 35689999999999999999999999999999999999999999854
Q ss_pred CCCCCccCCCCCCeeeeeCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015260 333 PRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL 390 (410)
Q Consensus 333 ~rk~~~~~AP~~gL~L~dv~Y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~l 390 (410)
+. ..++|||+||+|++|.|+. +|.+++++. +....+.+.-...+++.+++.-+|
T Consensus 207 -r~-~~~~APa~GL~L~~V~Y~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 260 (265)
T PRK14589 207 -KR-KVKPAPAEGLVLWDVDCGL-TFTPIPADP-RSVRRIARQRREAHLMETVYALLL 260 (265)
T ss_pred -CC-CCCccCCCCcEEeeeecCC-ccccccchH-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 4689999999999999975 999999988 667777777777777777665444
No 3
>COG0101 TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.9e-72 Score=543.19 Aligned_cols=235 Identities=36% Similarity=0.561 Sum_probs=211.2
Q ss_pred ceEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccCc
Q 015260 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNT 171 (410)
Q Consensus 92 r~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~ 171 (410)
++|+|+|+||||+|+|||+||+. +|||++|++||.+++. .++.+.+|||||+||||.|||+||++..+.
T Consensus 2 ~ri~l~iaYdGt~f~G~Q~Qp~~-~TVQ~~le~aL~~i~~-----~~~~i~~AGRTD~GVHA~gqv~hfd~~~~~----- 70 (266)
T COG0101 2 KRIALKIAYDGTRFHGWQRQPNV-RTVQGELEKALSKIGG-----ESVRVIGAGRTDAGVHALGQVVHFDTPADR----- 70 (266)
T ss_pred ceEEEEEEEcCCceeeeccCCCC-CCHHHHHHHHHHHhcC-----CcceeEEecCCCcCccccccEEEEEcCCcc-----
Confidence 48999999999999999999985 9999999999999864 345899999999999999999999987543
Q ss_pred CCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCC----------------CC
Q 015260 172 NNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRE----------------NL 235 (410)
Q Consensus 172 ~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~----------------~L 235 (410)
.+..+..+||+.||+||+|+++++||++|||||+|.+|+|+|+++.. +|
T Consensus 71 ---------------~~~~~~~~lN~~Lp~dI~V~~~~~v~~~FhaRfsa~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~l 135 (266)
T COG0101 71 ---------------PLEKLVRALNALLPPDIRVLDVAEVPDDFHARFSAKSRTYRYIIYNAPLRPPFLANYVWHVPYPL 135 (266)
T ss_pred ---------------cHHHHHHHHHhcCCCCcEEEEEEECCCCCCCcccccceEEEEEEcCccCCChhhhcccccccCcC
Confidence 13579999999999999999999999999999999999999999643 46
Q ss_pred CHHHHHHHHhhccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhc
Q 015260 236 NLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQ 315 (410)
Q Consensus 236 Die~M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~ 315 (410)
|+++|++|++.|+|+|||+|||+.+... ++++|+|.+++|.. .++++.|+|+|+||||||||+|||+|++||+
T Consensus 136 d~~~m~~aa~~l~G~HDF~sF~~~~~~~-~s~vRti~~~~v~~------~~~~i~i~i~g~sFL~~mVR~iVg~l~~vg~ 208 (266)
T COG0101 136 DLDAMREAAKLLLGTHDFTSFRKAGCQS-KSPVRTIYRIDVSR------DGDLIVIDISGNSFLWHMVRNIVGALLLVGR 208 (266)
T ss_pred CHHHHHHHHHHccccccchhhccCCCcc-CCCeEEEEEEEEEe------cCCEEEEEEEeChhHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987643 48999999999986 3679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeeeCCCCCCCcccc
Q 015260 316 GLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCS 361 (410)
Q Consensus 316 G~~~~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv~Y~~~~~~~~ 361 (410)
|.+++++|.++|+... ++...|+|||+||+|++|.|++..+...
T Consensus 209 g~~~~~~i~~ll~~~~--r~~~~~~Apa~GL~L~~v~Y~~~~~~~~ 252 (266)
T COG0101 209 GKRPVEWIKELLEAKD--RKLAGPTAPAEGLYLVRVDYPEDFELPE 252 (266)
T ss_pred CCCCHHHHHHHHhccC--cccCCCCCCCCccEEEeeccCCcccccc
Confidence 9999999999999732 4478899999999999999987554443
No 4
>cd02569 PseudoU_synth_ScPus3 PseudoU_synth_ScPus3-like: Pseudouridine synthase, Saccharomyces cerevisiae Pus3 like. This group consists of eukaryotic pseudouridine synthases similar to S. cerevisiae Pus3p, mouse Pus3p and, human PUS2. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus3p makes psi38 and psi39 in tRNAs. Mouse Pus3p has been shown to makes psi38 and, possibly also psi 39, in tRNAs. Psi38 and psi39 are highly conserved in tRNAs from eubacteria, archea and eukarya.
Probab=100.00 E-value=2.2e-71 Score=537.89 Aligned_cols=255 Identities=55% Similarity=0.960 Sum_probs=211.5
Q ss_pred EEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccCcCCCC
Q 015260 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNAS 175 (410)
Q Consensus 96 L~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~~~~~ 175 (410)
|+|+|+||+|+|||+|++..+|||++|++||.+++. +.+.+++.+++|||||+||||++||++|++.+++++.... ..
T Consensus 1 l~i~YdGt~y~G~Q~Q~~~~~TVq~~Le~aL~~~~~-i~~~~~~~~~~agRTD~GVHA~~qv~~f~~~~~~~~~~~~-~~ 78 (256)
T cd02569 1 LRFAYLGWNYNGFAVQEETTNTVEETLFEALEKTRL-IEDRQTSNYSRCGRTDKGVSAFGQVISLDVRSNLKPEDGL-DP 78 (256)
T ss_pred CEEEEeCCcceeeeECCCCCCCHHHHHHHHHHHhcC-CCCCCceeEEeecccCccccccCcEEEEEecCCCCccccc-cc
Confidence 589999999999999997458999999999999876 3445789999999999999999999999997765331100 00
Q ss_pred CCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCCCCCHHHHHHHHhhccceeccee
Q 015260 176 MGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRN 255 (410)
Q Consensus 176 ~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~~LDie~M~~Aak~fvGtHDF~N 255 (410)
..+ ........+..+...||+.||+||||+++.+||++|||||+|++|+|+|+|+...+|+++|++||++|+|+|||+|
T Consensus 79 ~~~-~~~~~~~~~~~~~~~lN~~LP~dI~V~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~ldi~~m~~a~~~f~G~HDF~~ 157 (256)
T cd02569 79 STD-VKSTADEEELPYCKILNRVLPPDIRILAWAPVPPDFSARFSCVSRTYRYFFPKGDLDIELMRKAAKLLLGEHDFRN 157 (256)
T ss_pred ccc-ccccccchHHHHHHHHHhhCCCCcEEEEEEECCCCcCCCccCCceEEEEEecCCCCCHHHHHHHHHHhhCCcchHH
Confidence 000 0111123345688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCC-CcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCC
Q 015260 256 FCKMDAA-NVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPR 334 (410)
Q Consensus 256 F~k~~~~-~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~~~~i~~lL~~~~~~r 334 (410)
||+.+.. +.++++|+|.+++|.......++.+++.|+|+|+||||||||+|||+|+.||+|.+++++|+++|+.+..+.
T Consensus 158 F~~~~~~~~~~~~~RtI~~~~v~~~~~~~~~~~~~~~~i~g~~FL~~mVR~mvg~ll~vg~G~~~~~~i~~~L~~~~r~~ 237 (256)
T cd02569 158 FCKMDVANQVTNYVRRVLSAEVEPVDQHPDGDGLYYFEVRGSAFLWHQVRCMMAVLFLIGQGLEPPSVISQLLDVEKNPR 237 (256)
T ss_pred HhccCcccCCCCCceEEEEEEEEEccCCCCCCcEEEEEEEEcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCccccC
Confidence 9986532 257899999999997521111224799999999999999999999999999999999999999999865443
Q ss_pred CCCccCCCCCCeeeeeCCC
Q 015260 335 KPQYNMAPEIPLVLQSCDF 353 (410)
Q Consensus 335 k~~~~~AP~~gL~L~dv~Y 353 (410)
.+.+++|||+||+|++|.|
T Consensus 238 ~~~~~~Ap~~GL~L~~v~~ 256 (256)
T cd02569 238 KPQYTMASEVPLVLYDCGF 256 (256)
T ss_pred CCCcCcCCCCCcEEEEeeC
Confidence 3333499999999999987
No 5
>PRK12434 tRNA pseudouridine synthase A; Reviewed
Probab=100.00 E-value=3.9e-71 Score=533.19 Aligned_cols=229 Identities=30% Similarity=0.514 Sum_probs=205.2
Q ss_pred cceEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccC
Q 015260 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECN 170 (410)
Q Consensus 91 kr~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~ 170 (410)
+++|+|.|+|+||+|+|||+|++..+|||++|++||.++ . .+++.+.+|||||+||||++||++|++...++
T Consensus 1 m~~~~l~i~YdGt~y~G~Q~Q~~~~~TVq~~le~aL~~~---~--~~~~~~~~agRTD~GVHA~~qv~~f~~~~~~~--- 72 (245)
T PRK12434 1 MRNIKLTIQYDGSRYKGWQKLGNNDNTIQGKIESVLSEM---T--GEEIEIIGCGRTDAGVHALNQVANFQTDEKLS--- 72 (245)
T ss_pred CceEEEEEEECCCccceEeeCCCCCCCHHHHHHHHHHHH---h--CCCeEEEEeccCCCCcCccCcEEEEEcCCCCC---
Confidence 367999999999999999999964589999999999996 2 25789999999999999999999999865432
Q ss_pred cCCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeC----------------CC
Q 015260 171 TNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR----------------EN 234 (410)
Q Consensus 171 ~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~----------------~~ 234 (410)
...+...||+.||+||||+++.+||++|||||+|++|+|+|+|+. ..
T Consensus 73 -----------------~~~l~~~lN~~LP~dI~V~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~f~~~~~~~~~~~ 135 (245)
T PRK12434 73 -----------------EDKIKKYLNEYLPNDIVVTNVEEVDERFHARYNVKSKTYLYKIWNEKFHNVFMRKYSMHVNEK 135 (245)
T ss_pred -----------------HHHHHHHHHccCCCCeEEEEEEECCCCcccccCCCcEEEEEEEccCCCCChhhCCeEEEeCCC
Confidence 246889999999999999999999999999999999999999853 45
Q ss_pred CCHHHHHHHHhhccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHh
Q 015260 235 LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314 (410)
Q Consensus 235 LDie~M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG 314 (410)
||+++|++||+.|+|+|||+|||+.+. +.++++|+|.+++|.. ..+++.|+|+|+||||||||+|||+|+.||
T Consensus 136 ld~~~m~~a~~~~~G~HDF~~F~~~~~-~~~~~~R~I~~~~v~~------~~~~~~i~i~g~~FL~~mVR~mvg~ll~vg 208 (245)
T PRK12434 136 LDVKAMKEAAKYLVGSHDFTSFTNAKS-KKKSTVREIYSIDIME------EDGFVQIRVSGNGFLHNMVRIIVGALIEVG 208 (245)
T ss_pred CCHHHHHHHHHHccCCcCHHhhcCCCC-CCCCCEEEEEEEEEEE------eCCEEEEEEEecHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999998653 3468999999999964 346899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeeeCCC
Q 015260 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353 (410)
Q Consensus 315 ~G~~~~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv~Y 353 (410)
+|++++++|+++|+..+ +....++|||+||+|++|.|
T Consensus 209 ~g~~~~~~i~~~L~~~~--r~~~~~~APa~GL~L~~V~Y 245 (245)
T PRK12434 209 LGQLKAEDIKQILEAKD--RNQANCTAPASGLYLENVEY 245 (245)
T ss_pred CCCCCHHHHHHHHhcCC--cccCCCccCCCCCEEeEeEC
Confidence 99999999999999854 44457899999999999987
No 6
>PRK00021 truA tRNA pseudouridine synthase A; Validated
Probab=100.00 E-value=3.7e-70 Score=525.93 Aligned_cols=228 Identities=31% Similarity=0.467 Sum_probs=205.8
Q ss_pred cceEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccC
Q 015260 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECN 170 (410)
Q Consensus 91 kr~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~ 170 (410)
+++++|.|+|+||+|+|||.|++ .+|||++|++||.+++. +++.+++||||||||||++||++|+++..+
T Consensus 1 m~~~~l~i~YdGt~y~G~q~q~~-~~TVq~~le~aL~~~~~-----~~~~~~~agRTD~GVHA~~qvv~~~~~~~~---- 70 (244)
T PRK00021 1 MMRIALTIEYDGTNFHGWQRQPN-GRTVQGELEKALSKLAG-----EPVRVIGAGRTDAGVHALGQVAHFDTPAPR---- 70 (244)
T ss_pred CeEEEEEEEECCCccceeeeCCC-CCCHHHHHHHHHHHHhC-----CCeEEEEEccCCCcccccCcEEEEEeCCCC----
Confidence 46899999999999999999998 58999999999999753 578999999999999999999999987543
Q ss_pred cCCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCC----------------C
Q 015260 171 TNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRE----------------N 234 (410)
Q Consensus 171 ~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~----------------~ 234 (410)
++..+...||+.||+||||+++.+||++|||||+|++|+|+|+++.. .
T Consensus 71 ----------------~~~~~~~~lN~~Lp~dI~V~~~~~v~~~F~aR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ 134 (244)
T PRK00021 71 ----------------PPEKWRRALNALLPDDIAVLWAEEVPDDFHARFSAKARRYRYRIYNRPARPPFLRGYVWHYPYP 134 (244)
T ss_pred ----------------CHHHHHHHHHhcCCCCEEEEEeEecCCCcCcCcCCCceEEEEEEecCCCCChhhCCcEEEeCCC
Confidence 23468899999999999999999999999999999999999999754 3
Q ss_pred CCHHHHHHHHhhccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHh
Q 015260 235 LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314 (410)
Q Consensus 235 LDie~M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG 314 (410)
+|+++|++|++.|+|+|||+|||+.+. +..+++|+|.+++|.. ..+++.|+|+|+||||||||+|||+|++||
T Consensus 135 ld~~~m~~a~~~~~G~HdF~~F~~~~~-~~~~~~R~I~~~~v~~------~~~~~~i~i~g~sFL~~qVR~mvg~l~~vg 207 (244)
T PRK00021 135 LDVDAMNEAAQYLLGEHDFTSFRASGC-QSKSPVRTIYEADVTR------EGDFIVFDISANGFLHNMVRNIVGTLLEVG 207 (244)
T ss_pred CcHHHHHHHHHHhcCceeeeeeeCCCC-CCCCCeEEEEEEEEEE------cCCEEEEEEEEchhHHHHHHHHHHHHHHHH
Confidence 899999999999999999999987543 4578999999999974 347999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeeeCCC
Q 015260 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353 (410)
Q Consensus 315 ~G~~~~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv~Y 353 (410)
+|.+++++|+++|+... +....++|||+||+|++|.|
T Consensus 208 ~g~~~~~~i~~~L~~~~--~~~~~~~APa~GL~L~~v~Y 244 (244)
T PRK00021 208 KGKRPPEDIKELLEAKD--RTLAGPTAPAEGLYLVEVDY 244 (244)
T ss_pred CCCCCHHHHHHHHhcCC--cccCCCccCCCCCEEeeeEC
Confidence 99999999999999854 33467899999999999987
No 7
>PRK14588 tRNA pseudouridine synthase ACD; Provisional
Probab=100.00 E-value=6.1e-70 Score=531.94 Aligned_cols=239 Identities=30% Similarity=0.397 Sum_probs=210.2
Q ss_pred cceEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccC
Q 015260 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECN 170 (410)
Q Consensus 91 kr~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~ 170 (410)
+++|+|+|+|+|++|+|||+|++ .+|||++|++||.++ . .+++.+.+|||||+||||+|||++|++...+
T Consensus 1 m~~~~l~iaYdGt~f~G~Q~Q~~-~~TVq~~Le~aL~~l---~--~~~i~i~~AgRTDaGVHA~gQv~~f~~~~~~---- 70 (272)
T PRK14588 1 MRTIALLLEYDGTDFAGSQWQTD-GRTVQGALEAAWQAL---T--QERRRIVLAGRTDAGVHARGQVAHVQTDTRH---- 70 (272)
T ss_pred CceEEEEEEEcCCceeeeEECCC-CCCHHHHHHHHHHHh---h--CCCceEEEecCCCcCcCccccEEEEEcCCCC----
Confidence 36899999999999999999998 489999999999996 3 2578899999999999999999999985432
Q ss_pred cCCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeC----------------CC
Q 015260 171 TNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR----------------EN 234 (410)
Q Consensus 171 ~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~----------------~~ 234 (410)
+...+...||+.||+||+|+++.+||++|||||+|++|+|+|+|+. ..
T Consensus 71 ----------------~~~~l~~~LN~~LP~dI~V~~v~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~p~~~~~~~~~~~~ 134 (272)
T PRK14588 71 ----------------SLATIWRGLNAHLPEDIGVQNAWEAPPDFHARFSAIQREYRYVIDCAPAPSPQLRHQVLHYAGT 134 (272)
T ss_pred ----------------CHHHHHHHHHhcCCCCeEEEEEEECCCCcCcccCCCcEEEEEEEcCCCCCChhhcCceEecCCC
Confidence 1246889999999999999999999999999999999999999953 45
Q ss_pred CCHHHHHHHHhhccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHh
Q 015260 235 LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314 (410)
Q Consensus 235 LDie~M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG 314 (410)
+|+++|++||+.|+|+|||+|||+.. +..+++|+|.++++.... ..+.+++.|+|+|+||||||||+|||+|+.||
T Consensus 135 lDi~~m~~a~~~f~G~HDF~~F~~~~--~~~~~vRtI~~~~~~~~~--~~~~~~i~~~i~g~~FL~~mVR~mVg~ll~vg 210 (272)
T PRK14588 135 LDVAAMDAALKLLIGTHDFAAFTTAP--QEGSTVRTCYWARCTDTE--WFGRPLLAIEVAANAFLQHMVRNIVGTLLLVG 210 (272)
T ss_pred CCHHHHHHHHHHccCCcchHhhcCCC--CCCCCeEEEEEEEEEEcc--cCCCCEEEEEEEEchhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999872 346899999999997521 11346899999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeeeCCCCCCCcccc
Q 015260 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFTCS 361 (410)
Q Consensus 315 ~G~~~~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv~Y~~~~~~~~ 361 (410)
+|.+++++|.++|+... +....++|||+||+|++|.|++..|.+-
T Consensus 211 ~g~~~~~~i~~~L~~~~--r~~~~~~APa~GL~L~~V~Y~~~~~~~~ 255 (272)
T PRK14588 211 RGRMTVDQFGAVLASRD--RRLAGPTAPAHGLYLTAVRYPPGLIRWV 255 (272)
T ss_pred CCCCCHHHHHHHHhcCC--cccCCCCCCCCCcEEeeEecCchhcccc
Confidence 99999999999999754 4456799999999999999987665553
No 8
>TIGR00071 hisT_truA pseudouridylate synthase I. universal so far, single copy in all prokaryotes, 3 in yeast. Trusted cutoff for orthology is about 100 based on 1 match only in complete prokaryote with length 200.
Probab=100.00 E-value=3.1e-69 Score=514.64 Aligned_cols=222 Identities=36% Similarity=0.586 Sum_probs=200.8
Q ss_pred ceEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccCc
Q 015260 92 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNT 171 (410)
Q Consensus 92 r~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~ 171 (410)
++++|.|+|+||+|+|||+||+ .+|||++|++||.+++. +++.+.+|||||+||||++||++|+++..++
T Consensus 1 ~~~~l~i~YdGt~f~G~Q~Q~~-~~TVq~~le~aL~~~~~-----~~i~~~~agRTD~GVHA~~qv~~f~~~~~~~---- 70 (227)
T TIGR00071 1 RKIALKIAYDGSNYHGWQRQPN-KRTVQGELEKALEAIGK-----KKITIMSAGRTDKGVHAMGQVISFDTPKEIP---- 70 (227)
T ss_pred CeEEEEEEEcCCCeeEEeECcC-CCCHHHHHHHHHHHHhC-----CCeeEEeeccCcCCccccccEEEEEecCCCC----
Confidence 4789999999999999999998 58999999999999742 5789999999999999999999999876432
Q ss_pred CCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCC-----CCCHHHHHHHHhh
Q 015260 172 NNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRE-----NLNLSAMESAGKK 246 (410)
Q Consensus 172 ~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~-----~LDie~M~~Aak~ 246 (410)
+..+...||+.||+||||+++.+||++|||||+|++|+|+|+|+.. .+|+++|++|+++
T Consensus 71 ----------------~~~~~~~lN~~Lp~dI~V~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~ld~~~m~~a~~~ 134 (227)
T TIGR00071 71 ----------------DNKLNAKLNALLPPDIRVKALAPVNDNFHARFSASKRHYRYILYNHRHYYSPLDLEKMRAAAKQ 134 (227)
T ss_pred ----------------HHHHHHHHHccCCCCEEEEEEEeCCCCcCCCCCCCcEEEEEEEccCcccCCCCCHHHHHHHHHH
Confidence 2468899999999999999999999999999999999999999876 6999999999999
Q ss_pred ccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCCHHHHHHH
Q 015260 247 FVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESL 326 (410)
Q Consensus 247 fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~~~~i~~l 326 (410)
|+|+|||+|||+.. .+.++++|+|.+++|.. +.+++.|+|+|+||||||||+|||+|+.||+|.+++++|+++
T Consensus 135 ~~G~HDF~~F~~~~-~~~~~~~R~i~~~~v~~------~~~~~~i~i~g~~FL~~mVR~mvg~l~~vg~g~~~~~~i~~~ 207 (227)
T TIGR00071 135 LLGKHDFSNFSKAK-SKSRSPIRTISDIKVSE------SGEYIIFDIIGNSFLWHMVRKIVGALVLVGRGKLPPEWVAKL 207 (227)
T ss_pred ccCcccHHHhcCCC-CCCCCCeEEEEEEEEEE------cCCEEEEEEEecHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 99999999999865 24578999999999975 457999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCccCCCCCCeee
Q 015260 327 LDTNGIPRKPQYNMAPEIPLVL 348 (410)
Q Consensus 327 L~~~~~~rk~~~~~AP~~gL~L 348 (410)
|+.+. +....++|||+||+|
T Consensus 208 L~~~~--r~~~~~~APa~GL~L 227 (227)
T TIGR00071 208 LDAKK--RNLAPTTAPANGLYL 227 (227)
T ss_pred HhcCC--cccCCCCCCCCCCcC
Confidence 99854 333568999999997
No 9
>PRK14586 tRNA pseudouridine synthase ACD; Provisional
Probab=100.00 E-value=4.2e-69 Score=519.03 Aligned_cols=228 Identities=33% Similarity=0.475 Sum_probs=203.3
Q ss_pred cceEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCC-cccc
Q 015260 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSN-IKEC 169 (410)
Q Consensus 91 kr~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~-~~~~ 169 (410)
+++|+|.|+|+||+|+|||+||+ .+|||++|++||.++ . .+++.+.+|||||+||||++||+||+++.. +
T Consensus 1 m~~~~l~i~YdGt~f~G~Q~Q~~-~~TVq~~le~aL~~~---~--~~~i~~~~agRTD~GVHA~~qv~~f~~~~~~~--- 71 (245)
T PRK14586 1 MKRVAAVVSYDGSNFFGYQGQPD-VRTVQGVFEDALERI---F--KQRIYTQAAGRTDTGVHANGQVIAFNCPNDRM--- 71 (245)
T ss_pred CeEEEEEEEEcCCceeeEEECCC-CCCHHHHHHHHHHHH---h--CCCeeEEEecCCccCCCccCcEEEEEecCCcC---
Confidence 36899999999999999999998 589999999999996 3 257899999999999999999999998654 2
Q ss_pred CcCCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeC----------------C
Q 015260 170 NTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR----------------E 233 (410)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~----------------~ 233 (410)
++..+...||+.||+||+|+++.+||++|||||+|.+|+|+|+|+. .
T Consensus 72 -----------------~~~~l~~~lN~~LP~dI~V~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~f~~~~~~~~~~ 134 (245)
T PRK14586 72 -----------------TEEDIKNAMNANLPDDIYVKKVFEVPKNFHPRFDAKKRIYHYFILTSKEKNVFLRKYVWWFPY 134 (245)
T ss_pred -----------------CHHHHHHHHHccCCCCeEEEEEEECCCCcCcccCCCcEEEEEEEecCCCCChhhCCceEEeCC
Confidence 2347889999999999999999999999999999999999999953 3
Q ss_pred CCCHHHHHHHHhhccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHH
Q 015260 234 NLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313 (410)
Q Consensus 234 ~LDie~M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~V 313 (410)
.||+++|++||+.|+|+|||+|| +.. .+.++++|+|.+++|.+. ..++++|+|+|+||||||||+|||+|+.|
T Consensus 135 ~ld~~~m~~a~~~l~G~HDF~~F-~~~-~~~~~~vR~I~~~~~~~~-----~~~~i~~~i~g~~FL~~mVR~mvg~l~~v 207 (245)
T PRK14586 135 ELDLEAMRKAAKYLEGEHDFTSF-KTG-SDERNPVRTIYRIRILRL-----KKDLILIRVEGRSFLRRMVRNIVGALVKV 207 (245)
T ss_pred CCCHHHHHHHHHHccCcchHHhh-cCC-CCCCCCcEEEEEEEEEEc-----cCCEEEEEEEechhHHHHHHHHHHHHHHH
Confidence 58999999999999999999999 543 235789999999999642 24689999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeeeCCC
Q 015260 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353 (410)
Q Consensus 314 G~G~~~~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv~Y 353 (410)
|+|.+++++|.++|+..+ +....++|||+||+|++|.|
T Consensus 208 g~g~~~~~~i~~~L~~~~--r~~~~~~APa~GL~L~~v~f 245 (245)
T PRK14586 208 GLGQWEPEKIKEVLEARD--RSKAAGTAPAHGLYLYKVLF 245 (245)
T ss_pred hCCCCCHHHHHHHHhcCC--cccCCCccCCCCCEEeEeEC
Confidence 999999999999999864 44467899999999999976
No 10
>cd02866 PseudoU_synth_TruA_Archea PseudoU_synth_archea: Pseudouridine synthase,. This group consists of archealpseudouridine synthases.Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. This group of proteins make Psedouridine in tRNAs.
Probab=100.00 E-value=2.5e-69 Score=513.35 Aligned_cols=221 Identities=36% Similarity=0.611 Sum_probs=200.6
Q ss_pred EEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccCcCCCC
Q 015260 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNAS 175 (410)
Q Consensus 96 L~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~~~~~ 175 (410)
|+|+|+||+|+|||.||+ .+|||++|++||.+++.+ .+.+++.+++|||||+||||++||++|++..
T Consensus 1 l~i~Y~Gt~y~G~q~q~~-~~TVq~~le~aL~~~~~~-~~~~~i~~~~agRTD~GVHA~~qv~~f~~~~----------- 67 (221)
T cd02866 1 LKVAYDGTPYHGFQRQPD-VRTVEGELIKALRRLGII-ESPKRPRLYSAGRTDAGVSALGNVVAFETEK----------- 67 (221)
T ss_pred CEEEEeCCceeeeeeCCC-CCCHHHHHHHHHHHhhcc-ccCCceEEEEEcCCccccCccccEEEEEeCc-----------
Confidence 579999999999999998 589999999999998753 3346899999999999999999999999842
Q ss_pred CCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCCCCCHHHHHHHHhhccceeccee
Q 015260 176 MGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRN 255 (410)
Q Consensus 176 ~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~~LDie~M~~Aak~fvGtHDF~N 255 (410)
+. +...||+.||+||||+++.+||++|||||+|++|+|+|+|+...+|+++|++|++.|+|+|||+|
T Consensus 68 ------------~~-~~~~lN~~LP~dI~v~~~~~v~~~F~ar~~a~~r~Y~Y~i~~~~ld~~~m~~a~~~~~G~HDF~~ 134 (221)
T cd02866 68 ------------EL-TPPAINNALPKDIRVWAWAKVPEDFHPRRDARRRYYRYYLGAEDYDVEAMAEAAKKLIGTHDFSN 134 (221)
T ss_pred ------------HH-HHHHHHhhCCCCEEEEEEEEeCCCCCCCccCCeEEEEEEECCCcCCHHHHHHHHHHhcCCcCHHH
Confidence 12 67889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCC
Q 015260 256 FCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRK 335 (410)
Q Consensus 256 F~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~~~~i~~lL~~~~~~rk 335 (410)
||+.+. .+++|+|.++++.. ..+++.|+|+|+||||||||+|||+|+.||+|.+++++|+++|+... +.
T Consensus 135 F~~~~~---~~~~R~I~~~~~~~------~~~~~~~~i~g~~FL~~mVR~mvg~ll~vg~g~~~~~~i~~~l~~~~--~~ 203 (221)
T cd02866 135 FSKRDG---RDPVRTIERIEIRE------NGEFLVIDVVGESFLWNMVRRIVGALSLVGKGKRENEWVDKLLDGEF--RK 203 (221)
T ss_pred hhCCCC---CCCcEEEEEEEEEE------cCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCC--cc
Confidence 998643 37899999999864 35799999999999999999999999999999999999999999854 33
Q ss_pred CCccCCCCCCeeeeeCCC
Q 015260 336 PQYNMAPEIPLVLQSCDF 353 (410)
Q Consensus 336 ~~~~~AP~~gL~L~dv~Y 353 (410)
...++|||+||+|++|.|
T Consensus 204 ~~~~~APa~GL~L~~v~Y 221 (221)
T cd02866 204 KDGVPAPPEGLILVDVKY 221 (221)
T ss_pred cCCCCCCCCCcEEEEeeC
Confidence 345699999999999987
No 11
>PRK14587 tRNA pseudouridine synthase ACD; Provisional
Probab=100.00 E-value=7.6e-69 Score=519.17 Aligned_cols=247 Identities=24% Similarity=0.349 Sum_probs=221.1
Q ss_pred eEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccCcC
Q 015260 93 YVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTN 172 (410)
Q Consensus 93 ~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~~ 172 (410)
+++|.|+|||++|+|||.||+ |||++|++||.+. . .+|||||+||||++||++| ..++
T Consensus 2 ~~~l~i~YdGt~f~G~Q~Q~~---TVq~~Le~aL~~i---~--------~~agRTDaGVHA~~qv~~~--~~~~------ 59 (256)
T PRK14587 2 PYLYRIAYDGTLFYGFTGHPN---SLEPALRRVFGEI---L--------GRGSRTDPGVSAVGNVVMT--SQKL------ 59 (256)
T ss_pred cEEEEEEECCCcccceecCcc---hHHHHHHHHHHHh---c--------cCccCCccCCCcccCEEEE--CCcC------
Confidence 589999999999999999986 9999999999884 2 2399999999999999997 2211
Q ss_pred CCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCCCCCHHHHHHHHhhccceec
Q 015260 173 NASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHD 252 (410)
Q Consensus 173 ~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~~LDie~M~~Aak~fvGtHD 252 (410)
+ ...||+.||+||+|+++.+||++||||| |++|+|+|+|+...+|+++|++|++.|+|+||
T Consensus 60 --------------~----~~~LN~~LP~dI~V~~~~~V~~~FhaR~-a~~R~Y~Y~i~~~~lDi~~m~~aa~~l~G~HD 120 (256)
T PRK14587 60 --------------P----LGYVNSKLPRGVWAWAVAEVPEGFNPRR-AKRRRYLYVAPHWGEDVEAMREAAELLAGTHD 120 (256)
T ss_pred --------------C----HHHHHhcCCCCeEEEEEEECCCCcCcCc-ccceEEEEEEccCcchHHHHHHHHHHhcCCcC
Confidence 1 3579999999999999999999999998 99999999998888999999999999999999
Q ss_pred ceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCC
Q 015260 253 FRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI 332 (410)
Q Consensus 253 F~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~~~~i~~lL~~~~~ 332 (410)
|+|||+.+..+..+++|+|.+++|.. .++++.|+|+|+||||||||+|||+|+.||+|.+++++|.++|+..
T Consensus 121 F~~F~~~~~~~~~~~vRtI~~i~v~~------~~~~i~i~i~g~sFL~~mVR~mVG~Ll~Vg~G~~~~~~i~~~L~~~-- 192 (256)
T PRK14587 121 YSSFIQRRGEKATPTVTTVYEIGVEL------RGDLIYLYFVGRGFRNKMIRKMAWAILAAGRGVLSRRDIAELLERP-- 192 (256)
T ss_pred hHHhccCCCCCCCCCEEEEEEEEEEE------eCCEEEEEEEechhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC--
Confidence 99999876433333999999999964 3468999999999999999999999999999999999999999952
Q ss_pred CCCCCccCCCCCCeeeeeCCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015260 333 PRKPQYNMAPEIPLVLQSCDFDGLKFTCSLDAGHDLRLHLRNECQVYQLQAAIFHEAL 390 (410)
Q Consensus 333 ~rk~~~~~AP~~gL~L~dv~Y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~i~~~~l 390 (410)
+....|+|||+||+|++|.|++ .|..++++.++.+..|.+++..+..++++++.+-
T Consensus 193 -r~~~~~~APa~GL~L~~V~Y~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (256)
T PRK14587 193 -RPGAVPSAPAEGLVLLDIEYDV-KFQVDYTALRKAYVYFLSKYRHLEAHAAALKAAG 248 (256)
T ss_pred -cccCCCCCCCCCCEEeeeccCc-cccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4456799999999999999974 9999999999999999999999999999988664
No 12
>cd02570 PseudoU_synth_EcTruA PseudoU_synth_EcTruA: Pseudouridine synthase, Escherichia coli TruA like. This group consists of eukaryotic and bacterial pseudouridine synthases similar to E. coli TruA, Pseudomonas aeruginosa truA and human pseudouridine synthase-like 1 (PUSL1). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruA makes psi38/39 and/or 40 in tRNA. psi38 and psi39 in tRNAs are highly phylogenetically conserved. P. aeruginosa truA is required for induction of type III secretory genes and may act through modifying tRNAs critical for the expression of type III genes or their regulators.
Probab=100.00 E-value=6.4e-69 Score=515.62 Aligned_cols=223 Identities=33% Similarity=0.514 Sum_probs=201.6
Q ss_pred EEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccCcCCCC
Q 015260 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNAS 175 (410)
Q Consensus 96 L~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~~~~~ 175 (410)
|+|+|+||+|+|||+|++ .+|||++|++||.+++. +++.+.+||||||||||++||++|+++..+
T Consensus 1 l~i~Y~Gt~f~G~q~q~~-~~TVq~~le~aL~~~~~-----~~~~i~~agRTD~GVHA~~qvv~~~~~~~~--------- 65 (239)
T cd02570 1 LTIEYDGTNFSGWQRQPN-GRTVQGELEKALSKIAG-----EPVRVIGAGRTDAGVHALGQVAHFDTPSEI--------- 65 (239)
T ss_pred CEEEEeCCccceeeeCCC-CCCHHHHHHHHHHHHhC-----CCeEEEEECcCCCCcCccccEEEEEECCCC---------
Confidence 579999999999999998 48999999999999742 678999999999999999999999997643
Q ss_pred CCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCC----------------CCCHHH
Q 015260 176 MGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRE----------------NLNLSA 239 (410)
Q Consensus 176 ~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~----------------~LDie~ 239 (410)
+...+...||+.||+||||+++.+||++|||||+|++|+|+|+|+.. .+|+++
T Consensus 66 -----------~~~~~~~~lN~~Lp~dI~v~~i~~v~~~F~aR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~~d~~~ 134 (239)
T cd02570 66 -----------PLEKLIKALNSLLPPDIRVLSAEEVPDDFHARFSAKSRTYRYRILNRPVPSPFLRRYVWHVPRPLDIEA 134 (239)
T ss_pred -----------CHHHHHHHHHccCCCCEEEEEEEECCCCcCcccCCCceEEEEEEccCCCCChhhCCeEEEeCCCCCHHH
Confidence 13468899999999999999999999999999999999999999754 689999
Q ss_pred HHHHHhhccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCC
Q 015260 240 MESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLES 319 (410)
Q Consensus 240 M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~ 319 (410)
|++|+++|+|+|||+|||+.+. ..++++|+|.+++|.+ ..+++.|+|+|+||||||||+|||+|++||+|.++
T Consensus 135 m~~a~~~f~G~HdF~~F~~~~~-~~~~~~R~I~~~~v~~------~~~~~~i~i~g~sFL~~qVR~mvg~ll~vg~g~~~ 207 (239)
T cd02570 135 MQEAAKLLLGTHDFSSFRAAGC-QSKSTVRTIYRADVYR------EGDLIVFEIRANGFLYHMVRNIVGTLLEVGRGKLS 207 (239)
T ss_pred HHHHHHHccCCcchhhhCCCCC-CCCCCeEEEEEEEEEE------eCCEEEEEEEEcHHHHHHHHHHHHHHHHHHCCCCC
Confidence 9999999999999999998764 3468999999999975 34789999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCccCCCCCCeeeeeCCC
Q 015260 320 IDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDF 353 (410)
Q Consensus 320 ~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv~Y 353 (410)
+++|+++|+... +....++|||+||+|++|.|
T Consensus 208 ~~~i~~~l~~~~--~~~~~~~APa~GL~L~~v~Y 239 (239)
T cd02570 208 PEDIKEILEAKD--RTAAGPTAPAHGLYLVKVEY 239 (239)
T ss_pred HHHHHHHHhcCC--cccCCCCcCCCCCEEeeeEC
Confidence 999999999753 33347899999999999987
No 13
>cd00497 PseudoU_synth_TruA_like PseudoU_synth_TruA: Pseudouridine synthase, TruA family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruA, Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus3p Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae PUS1 catalyzes the formation of psi34 and psi36 in the intron containing tRNAIle, psi35 in the intron containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. S. cerevisiae Pus3p makes psi38 and psi39 in tRNAs. Psi44 in U2 snRNA and, psi38 and psi39 in tRNAs are highly ph
Probab=100.00 E-value=6.2e-69 Score=511.64 Aligned_cols=224 Identities=47% Similarity=0.845 Sum_probs=200.4
Q ss_pred EEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccCcCCCCCC
Q 015260 98 VMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMG 177 (410)
Q Consensus 98 iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~~~~~~~ 177 (410)
|+|+||+|+|||+||+ .+|||++|++||.+++. ..+.+++.+.+|||||+||||++||++|++...+
T Consensus 1 i~YdGt~f~G~Q~Q~~-~~TVq~~le~aL~~~~~-~~~~~~~~i~~agRTD~GVHA~~qv~~~~~~~~~----------- 67 (224)
T cd00497 1 IAYDGWKYHGFQRQPD-VPTVEGELFKALLKTGL-IESPKPSNYSRAGRTDKGVSALGQVVSLETRSKL----------- 67 (224)
T ss_pred CEEcCCceeeEeeCcC-CCCHHHHHHHHHHHhhC-cCCCcceeEEEeccccccccccccEEEEEECCCc-----------
Confidence 6899999999999998 48999999999999864 2223588999999999999999999999986432
Q ss_pred ccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCCCCCHHHHHHHHhhccceecceeee
Q 015260 178 ETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEHDFRNFC 257 (410)
Q Consensus 178 ~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~~LDie~M~~Aak~fvGtHDF~NF~ 257 (410)
+ .+...||+.||+||+|+++.+||++|||||+|.+|+|+|+++...+|+++|++||+.|+|+|||+|||
T Consensus 68 ----------~-~~~~~lN~~Lp~dI~v~~~~~v~~~F~aR~~a~~R~Y~Y~i~~~~~d~~~m~~a~~~f~G~HDF~~F~ 136 (224)
T cd00497 68 ----------K-PYPDILNGLLPKDIRVLAWAPVPEDFHARFSCVSRTYRYYFPGGDLDIEAMREAAKLLLGTHDFRNFC 136 (224)
T ss_pred ----------H-HHHHHHHhhCCCCcEEEEEEEeCCCCCCCcccCeEEEEEEECCCCcCHHHHHHHHHHccCcccHHHhc
Confidence 1 57889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCCCC
Q 015260 258 KMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQ 337 (410)
Q Consensus 258 k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~~~~i~~lL~~~~~~rk~~ 337 (410)
+.+.. .++++|+|.+++|.. ..+++.|+|+|+||||||||+|||+|+.||+|.+++++|+++|+.... ....
T Consensus 137 ~~~~~-~~~~~RtI~~~~v~~------~~~~~~i~i~g~sFL~~mVR~mvg~ll~vg~g~~~~~~i~~~l~~~~~-~~~~ 208 (224)
T cd00497 137 KKDGR-KKNPVRTIISAEVEE------VDDFYVFEVKGKSFLWHQVRRIVAALFLVGQGLEPPSIISRLLDEEKR-PSKP 208 (224)
T ss_pred CCCCC-CCCCeEEEEEEEEEe------cCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcCCc-ccCC
Confidence 87543 378999999999975 346999999999999999999999999999999999999999987542 2222
Q ss_pred ccCCCCCCeeeeeCCC
Q 015260 338 YNMAPEIPLVLQSCDF 353 (410)
Q Consensus 338 ~~~AP~~gL~L~dv~Y 353 (410)
.++|||+||+|++|.|
T Consensus 209 ~~~APa~GL~L~~V~Y 224 (224)
T cd00497 209 QYPAPPEPLVLWDCKY 224 (224)
T ss_pred CCcCCCCCcEEeeeeC
Confidence 3599999999999987
No 14
>cd02568 PseudoU_synth_PUS1_PUS2 PseudoU_synth_PUS1_PUS2: Pseudouridine synthase, PUS1/ PUS2 like. This group consists of eukaryotic pseudouridine synthases similar to Saccharomyces cerevisiae Pus1p, S. cerevisiae Pus2p, Caenorhabditis elegans Pus1p and human PUS1. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. S. cerevisiae Pus1p catalyzes the formation of psi34 and psi36 in the intron-containing tRNAIle, psi35 in the intron-containing tRNATyr, psi27 and/or psi28 in several yeast cytoplasmic tRNAs and, psi44 in U2 small nuclear RNA (U2 snRNA). The presence of the intron is required for the formation of psi 34, 35 and 36. In addition S. cerevisiae PUS1 makes are psi 26, 65 and 67. C. elegans Pus1p does not modify psi44 in U2 snRNA. Mouse Pus1p makes psi27/28 in pre- tRNASer , tRNAVal and tRNAIle, psi 34/36 in tRNAIle and, psi 32 and potentially 67 in tRNAVal. Psi44 in U
Probab=100.00 E-value=4.1e-69 Score=518.80 Aligned_cols=240 Identities=30% Similarity=0.440 Sum_probs=207.7
Q ss_pred EEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhc----CCceeeeeeeccCCccccccCCEEEEEEcCCccccCc
Q 015260 96 LKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA----DKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNT 171 (410)
Q Consensus 96 L~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~----~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~ 171 (410)
|.|+|+||+|+|||+||+..+|||++|++||.+++.+.+ +.+++++++|||||+||||++||++|+++..+++.
T Consensus 1 l~i~Y~Gt~f~G~Q~Q~~~~~TVq~~le~aL~~~~~~~~~~~~~~~~~~~~~agRTD~GVHA~~qv~~~~~~~~~~~~-- 78 (245)
T cd02568 1 LLFGYCGTGYHGMQYNPGNYKTIEGELERALVKAGAISESNAGDPKKIGFSRAARTDKGVHAARNVVSLKVIIDDPEG-- 78 (245)
T ss_pred CEEEEeCCCccccccCCCCCCChHHHHHHHHHHcCCcCccccCChhhcceeeecccccchhheeeEEEEEEecccccc--
Confidence 579999999999999998438999999999999976321 23689999999999999999999999997654310
Q ss_pred CCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCCC-CCHHHHHHHHhhccce
Q 015260 172 NNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN-LNLSAMESAGKKFVGE 250 (410)
Q Consensus 172 ~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~~-LDie~M~~Aak~fvGt 250 (410)
......+...||+.||+||+|++|.+|+++|||||+|++|+|+|+|+... +|+++|++|+++|+|+
T Consensus 79 -------------~~~~~~~~~~lN~~Lp~dI~v~~~~~v~~~F~aR~~a~~R~Y~Y~i~~~~~~d~~~m~~a~~~~~G~ 145 (245)
T cd02568 79 -------------LGIGEDLVEKLNSHLPEDIRVFGITRVTKSFNARKACDSRTYEYLLPTFALETLDRFNEILKLYVGT 145 (245)
T ss_pred -------------ccchHHHHHHHHccCCCceEEEEEEcCCCCCCcchhhhcceeEEECCcccHhHHHHHHHHHHHhhCc
Confidence 01234788999999999999999999999999999999999999999888 6999999999999999
Q ss_pred ecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCCHHHHHHHHhcC
Q 015260 251 HDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTN 330 (410)
Q Consensus 251 HDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~~~~i~~lL~~~ 330 (410)
|||+|||+.+..+.++++|+|.++++.+......+.+++.|+|+|+||||||||+|||+|+.||+|.++++.|+.+|+..
T Consensus 146 HdF~~F~~~~~~~~~~~~R~i~~~~~~~~~~~~~~~~~i~i~i~g~~FL~~mVR~mvg~l~~vg~g~~~~~~i~~~L~~~ 225 (245)
T cd02568 146 HNFHNFTVRKKFEDPSANRFIISFYVSEPFVIEEGLEWVSIEIHGQSFMLHQIRKMIGLAIAIVRGGAPESLIDLSFNKA 225 (245)
T ss_pred cccccCcccccccCCCceeEEEEEEEecceeecCCccEEEEEEEechHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhccc
Confidence 99999998765445789999999999752111123479999999999999999999999999999999999999999953
Q ss_pred CCCCCCCccCCCCCCeeeeeCCC
Q 015260 331 GIPRKPQYNMAPEIPLVLQSCDF 353 (410)
Q Consensus 331 ~~~rk~~~~~AP~~gL~L~dv~Y 353 (410)
+....|+|||+||+|++|.|
T Consensus 226 ---~~~~~~~APa~GL~L~~v~y 245 (245)
T cd02568 226 ---KRIIIPLAPGLGLLLEYPHF 245 (245)
T ss_pred ---ccccccCCCCcceeEecccC
Confidence 23457999999999999987
No 15
>PLN03078 Putative tRNA pseudouridine synthase; Provisional
Probab=100.00 E-value=3.2e-65 Score=526.99 Aligned_cols=260 Identities=25% Similarity=0.350 Sum_probs=216.9
Q ss_pred CCCCccccccceEEEEEEEeCCCceeeeecCCC--CCcHHHHHHHHHHHhhhhhc----CCceeeeeeeccCCccccccC
Q 015260 82 MSGTLNHHFKRYVALKVMYFGQRFYGFASDGNM--EPTVESEIFKALEKTRLLVA----DKKESHYSRCGRTDKGVSSVG 155 (410)
Q Consensus 82 ~~~~~~~~~kr~vaL~iaY~Gt~Y~G~q~Q~~~--~~TVE~~L~~AL~k~~li~~----~~~~~~~~r~gRTDkGVhA~~ 155 (410)
..++|++++||+|+|.|+|+||+|+|||+|++. .+|||++|++||.+++.+.+ +.+++.|++||||||||||+|
T Consensus 61 ~~~~w~~~~krrvaL~IaYdGt~Y~G~Q~Q~n~~~~~TVEg~LE~AL~k~~~I~e~n~~~~~ki~~~rAgRTDkGVHA~g 140 (513)
T PLN03078 61 GGMKWESARKKKVVLRVGYVGTDYRGLQKQRDLSSLSTIEGELETAIFKAGGIRESNYGNLHKIGWARSSRTDKGVHSLA 140 (513)
T ss_pred CCCCcccccceEEEEEEEEcCCCcceeeECCCCCCCCCHHHHHHHHHHHHhCccccccccccceeEEeeccCCcCccccc
Confidence 456899999999999999999999999999873 47999999999999976443 236899999999999999999
Q ss_pred CEEEEEEcCCccccCcCCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCCC-
Q 015260 156 QVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWREN- 234 (410)
Q Consensus 156 QVis~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~~- 234 (410)
||+||++...... . ..+.....++..||++||+||||++|.+|+++|||||+|++|+|+|+||...
T Consensus 141 QVvsf~l~~p~~~-----------~--~~d~~~~~L~~~LN~~LP~DIRVl~v~~V~~~FhAR~sc~sRtY~Y~iP~~~~ 207 (513)
T PLN03078 141 TMISLKMEIPENA-----------W--KDDPDGIALAKFINSHLPDNIRVFSILPAQRSFDPRRECDLRKYSYLLPAEVI 207 (513)
T ss_pred cEEEEeccCcchh-----------c--cccchHHHHHHHHHhcCCCCeEEEEEEECCCCcCCCCCCCceEEEEEEccccc
Confidence 9999998531100 0 0011234688999999999999999999999999999999999999997621
Q ss_pred ------------CCHHHHHHHHhhccceecceeeeecCCCCc--------------------------------------
Q 015260 235 ------------LNLSAMESAGKKFVGEHDFRNFCKMDAANV-------------------------------------- 264 (410)
Q Consensus 235 ------------LDie~M~~Aak~fvGtHDF~NF~k~~~~~~-------------------------------------- 264 (410)
.|+++|++|++.|+|+|||+|||.......
T Consensus 208 ~~k~~f~~~~~~~dI~kMneAl~~fiGtHDFhNFT~r~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (513)
T PLN03078 208 GIKSGFSSEEIDEHISEFNSILNGFEGEHPFHNYTARSKYRKKLPGKHKQRNGAVSRRAKSSKEMSSSESEENHGEISEE 287 (513)
T ss_pred cCCCccchhhhHHHHHHHHHHHHhcccccCcccccCCCccCccccccccccccccccccccccccccccccccccccccc
Confidence 268999999999999999999996431110
Q ss_pred ----------------------------------------------ccceEEEEEEEEeeccccccCCcEEEEEEEeccc
Q 015260 265 ----------------------------------------------HNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAF 298 (410)
Q Consensus 265 ----------------------------------------------~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sF 298 (410)
.+..|.|.+|.+.... ...|.+++.|+|.|+||
T Consensus 288 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~e~d~~d~i~~s~~R~I~~~~~~~~~-~~~g~~fv~i~I~GqSF 366 (513)
T PLN03078 288 DEEDLSFSSIPSGSSDENEDILKFQSSQVQIRARWLHEPDETDRISASHFRKIFRCSCGKLE-KSLGFDFVELSIWGESF 366 (513)
T ss_pred hhhhhccccccccccccccccccccccchhhhhhhccCCccccccchhheEEEEEeecCCcc-ccCCceEEEEEEEehhH
Confidence 0236899999876532 33567999999999999
Q ss_pred hhHhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeeeCCCCCCCc
Q 015260 299 LWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKF 358 (410)
Q Consensus 299 L~hQVR~MVg~Ll~VG~G~~~~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv~Y~~~~~ 358 (410)
||||||+|||++++|++|..+++.|+.+|+.. .+..+|+||+.||+|++|.|+.++-
T Consensus 367 mlhQIRKMIG~~~aV~rg~~~~~~i~~~L~~~---~r~~~P~AP~~GL~L~~~~F~~yn~ 423 (513)
T PLN03078 367 MLHQIRKMVGTAVAVKRELLPRDIIRLSLTKF---SRIVLPLAPSEVLILRGNSFSVRKK 423 (513)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHhccc---cccccccCCCcceEEEeeecccccc
Confidence 99999999999999999999999999999763 2346899999999999999987754
No 16
>KOG2553 consensus Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-57 Score=452.35 Aligned_cols=247 Identities=30% Similarity=0.470 Sum_probs=218.7
Q ss_pred ccccceEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhc----CCceeeeeeeccCCccccccCCEEEEEEc
Q 015260 88 HHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVA----DKKESHYSRCGRTDKGVSSVGQVIAIYLR 163 (410)
Q Consensus 88 ~~~kr~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~----~~~~~~~~r~gRTDkGVhA~~QVis~~~~ 163 (410)
+++||+||+.|+|.|++|+|+|+||+ .+|||++|++||.++|.|.+ +.+++.|.||+||||||||++||||+++.
T Consensus 33 k~~KrKVail~gY~G~gY~GmQ~N~~-~kTIEgeL~~al~~aGaI~e~n~~dpkk~~~~raARTDKGVhA~~nviSlK~~ 111 (416)
T KOG2553|consen 33 KPRKRKVAILLGYCGTGYHGMQYNPP-LKTIEGELFEALFKAGAISESNAGDPKKIGFARAARTDKGVHAAGNVISLKLE 111 (416)
T ss_pred cccceEEEEEEEeccCCccceecCCC-CCchHHHHHHHHHHcCCcccccccChHHhhhHHhhccccchhhhhheeEEEEe
Confidence 67899999999999999999999998 59999999999999999763 45789999999999999999999999985
Q ss_pred CCccccCcCCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCC------CC--
Q 015260 164 SNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRE------NL-- 235 (410)
Q Consensus 164 s~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~------~L-- 235 (410)
.+ ...++..||..||++||||++.+|++.||||-.|.+|+|.|++|.. ..
T Consensus 112 ~~----------------------~~~lv~~lN~~Lp~~IRv~~v~r~~k~F~pr~~CdsR~YeYllPtfal~~p~~~~~ 169 (416)
T KOG2553|consen 112 LD----------------------DPELVEKLNEILPEQIRVWGVKRVTKSFNPRKQCDSRTYEYLLPTFALAPPKPSSL 169 (416)
T ss_pred eC----------------------cHHHHHHHhhhCCcceEEEEEEecCCCCCccccccceeEEEecceeeecCCCCccH
Confidence 32 1368899999999999999999999999999999999999998731 11
Q ss_pred -------------------------------------------CHHHHHHHHhhccceecceeeeecCCCCcccceEEEE
Q 015260 236 -------------------------------------------NLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVT 272 (410)
Q Consensus 236 -------------------------------------------Die~M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~ 272 (410)
.++.++.+++.|+||||||||+..+.....+..|.|.
T Consensus 170 ~~~~~~~~~e~~~~f~~~~~~~~~~~~s~~~~~~~~~yr~s~~~l~~~~~~ls~Y~GthnFHNfT~~~~~~dpss~R~I~ 249 (416)
T KOG2553|consen 170 LEVDIQYDKEFEKEFWNTYPLSAKERLSGQDRKTESGYRLSEEKLEVFNTILSKYVGTHNFHNFTTGKDFTDPSSNRFIK 249 (416)
T ss_pred HHhhhhhhhhhhhhhccccchhhhhhhcccccccccceeeCHHHHHHHHHHHHHhhcccccceecccCCCCCccccceee
Confidence 2457889999999999999999988767788889999
Q ss_pred EEEEeecccc-ccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeeeC
Q 015260 273 SFEISPCYIS-FEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSC 351 (410)
Q Consensus 273 s~~I~~~~~~-~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv 351 (410)
++.++.+... .++.+++.+.|+|+|||.||||+|||++++|-++..+.+.|+..++. ..+..+|+||++||+|.++
T Consensus 250 s~~~~~pfv~~~~~~e~V~i~i~GQSFMLHQIRKMVglav~i~R~~~p~~~i~~af~~---~~ri~IP~AP~~gLlL~~~ 326 (416)
T KOG2553|consen 250 SFTVSEPFVINDEGVEFVKIKIHGQSFMLHQIRKMVGLAVLIVRSGAPASTIQRAFNK---EHKINIPKAPGEGLLLEEP 326 (416)
T ss_pred EEEecCcceeccCCceEEEEEEEcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCC---CccccccCCCcceEEeecc
Confidence 9999854322 36789999999999999999999999999999999999999999984 3567899999999999999
Q ss_pred CCCCCCccc
Q 015260 352 DFDGLKFTC 360 (410)
Q Consensus 352 ~Y~~~~~~~ 360 (410)
.|+.++-..
T Consensus 327 ~F~~yn~~~ 335 (416)
T KOG2553|consen 327 HFESYNRKF 335 (416)
T ss_pred ccccccccc
Confidence 998776543
No 17
>KOG4393 consensus Predicted pseudouridylate synthase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-42 Score=326.57 Aligned_cols=243 Identities=26% Similarity=0.268 Sum_probs=200.7
Q ss_pred cceEEEEEEEeCCCceeeeecCCC-CCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCcccc
Q 015260 91 KRYVALKVMYFGQRFYGFASDGNM-EPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC 169 (410)
Q Consensus 91 kr~vaL~iaY~Gt~Y~G~q~Q~~~-~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~ 169 (410)
.+++.|+|+||||+|.|||.+... ..|||+-|++|+.+. .+ .+...++.+||||+||||.+|++++.++.+--
T Consensus 4 ~~ryll~i~ydgT~f~e~a~~~s~~~~tIq~~leea~eeq---t~-l~~l~l~~ssrtDa~Vha~~naa~~~vpr~sg-- 77 (295)
T KOG4393|consen 4 IMRYLLKIPYDGTAFEESAERLSKVARTIQGFLEEASEEQ---TG-LDRLDLESSSRTDAGVHAYLNAAHYIVPRFSG-- 77 (295)
T ss_pred hheeEEEecccccccHHHHhccCCcceehhhhhhhhHHhh---cC-CcceeecccCCCchhhheeeeeEEEEeecccC--
Confidence 467899999999999999998753 139999999999985 33 36789999999999999999999999865410
Q ss_pred CcCCCCCCccccccccccHHHHHHHHhccC-CC--CeEEEEeEecCCCCCcCCCCCCceeEEEeeC--------------
Q 015260 170 NTNNASMGETVQEEQIEDEIDYVRVLNRVL-PK--DIRVIGWSPAPTDFSARFSCISREYKYFFWR-------------- 232 (410)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~e~~~~~~LN~~L-P~--dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~-------------- 232 (410)
.......+.+|..| ++ ||+|+.+..||.+|||||++.+|+|.|.+..
T Consensus 78 ----------------~~~~~~~~a~nt~l~~k~gdirV~dv~~Vps~FhaR~sassRtY~YRla~g~d~l~~fERd~cW 141 (295)
T KOG4393|consen 78 ----------------SQQQAKDRAVNTVLQRKDGDIRVIDVRCVPSNFHARYSASSRTYFYRLASGSDPLSIFERDRCW 141 (295)
T ss_pred ----------------CcHHHHHHHHhccccCCCCceEEEEeeecCcchhheecccceeEEEEeecCCCccChhhhcccc
Confidence 01123456677765 44 9999999999999999999999999999742
Q ss_pred ---CCCCHHHHHHHHhhccceecceeeeecCCCCcccceEEEEEEEEeec---cc-------cccCCcEEEEEEEeccch
Q 015260 233 ---ENLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPC---YI-------SFEGNQLCAIKIRGSAFL 299 (410)
Q Consensus 233 ---~~LDie~M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~---~~-------~~~~~~~~~~~I~G~sFL 299 (410)
..||..+|++|+++|+|+|||.+|.+.. +.+..+.+|+..+.|... .. ...-.+++.++++++|||
T Consensus 142 ~lp~~lna~kmqeaa~lf~G~hdfsaf~~at-s~~y~P~~t~rr~sv~~~g~~~a~~~~~~~e~~~~~~~nve~e~~gfl 220 (295)
T KOG4393|consen 142 HLPEELNARKMQEAAPLFEGSHDFSAFTEAT-STVYFPSITERRLSVLNNGDPLACSNQPETEGVTTNVGNVEGETEGFL 220 (295)
T ss_pred cCCcccCHHHHHhhhhhhccchhhhhhhcCC-CCCCCCcccceeeeecccCCccccccCCccccceeeeEEEEEEecchH
Confidence 4589999999999999999999999876 345566777777776311 10 112357899999999999
Q ss_pred hHhHHHHHHHHHHHhcCCCCHHHHHHHHhcCCC--CCCCCccCCCCCCeeeeeCCCCCC
Q 015260 300 WHQVRCMVAVLFMIGQGLESIDVIESLLDTNGI--PRKPQYNMAPEIPLVLQSCDFDGL 356 (410)
Q Consensus 300 ~hQVR~MVg~Ll~VG~G~~~~~~i~~lL~~~~~--~rk~~~~~AP~~gL~L~dv~Y~~~ 356 (410)
|.|||+|++.|+.+|.+.+.+..+..+|.+... --|.+.+.|||+||+|.+|.|.+.
T Consensus 221 yrQvRrm~a~LV~~g~~al~~~qv~~iLe~~~~~~l~k~~~~vapphglfL~sv~Y~n~ 279 (295)
T KOG4393|consen 221 YRQVRRMRAYLVTAGSRALLYHQVLYILEVRDIVGLLKCVGTVAPPHGLFLSSVEYVNL 279 (295)
T ss_pred HHHHHhhheeeeeecccccchhhhhhhhhccchhhhhhccCCCCCCccceeeeEEechh
Confidence 999999999999999999999999999998653 235678999999999999999873
No 18
>PF01416 PseudoU_synth_1: tRNA pseudouridine synthase; InterPro: IPR020097 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. This entry represents pseudouridine synthase I (TruA). TruA from Escherichia coli modifies positions uracil-38, U-39 and/or U-40 in tRNA [, ]. TruA contains one atom of zinc essential for its native conformation and tRNA recognition and has a strictly conserved aspartic acid that is likely to be involved in catalysis []. These enzymes are dimeric proteins that contain two positively charged, RNA-binding clefts along their surface. Each cleft contains a highly conserved aspartic acid located at its centre. The structural domains have a topological similarity to those of other RNA-binding proteins, though the mode of interaction with tRNA appears to be unique. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1VS3_B 2NR0_B 2NQP_D 1DJ0_A 2NRE_A.
Probab=99.88 E-value=6.8e-25 Score=184.29 Aligned_cols=104 Identities=36% Similarity=0.596 Sum_probs=87.1
Q ss_pred HHhhccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHhcCCCCHHH
Q 015260 243 AGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIGQGLESIDV 322 (410)
Q Consensus 243 Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG~G~~~~~~ 322 (410)
|++.|+|+|||++||+.+..+ .+++|+|.++++.. ..+++. +|+|+||||||||+|||+++.+|+|..+++.
T Consensus 1 A~~~~~G~HdF~~f~~~~~~~-~~~~r~i~~~~~~~------~~~~~~-~i~g~~Fl~~~vR~~vg~~~~~~~G~~~~~~ 72 (105)
T PF01416_consen 1 AAKLYVGTHDFSGFQKQKTVE-KNTIRTIFSIDIIE------EGDVVV-EIHGNSFLRHQVRIMVGTLLRTGRGVHSLEQ 72 (105)
T ss_dssp -CCEETCEEECCGCSSCS-HH-HHHCCCEEEEECCC------CCCEEE-EEEESS--TTHHHHHHCCCCHHHTTSCEEEC
T ss_pred CcceeEecCCCcCCEECCccc-ccHHHHHHHHhhhc------CCCEEE-EEEecccccccchhhhHHHHHHhcCCCCHHH
Confidence 688999999999999986433 68899999999853 456888 9999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCC-CccCCCCCCeeeeeCCCC
Q 015260 323 IESLLDTNGIPRKP-QYNMAPEIPLVLQSCDFD 354 (410)
Q Consensus 323 i~~lL~~~~~~rk~-~~~~AP~~gL~L~dv~Y~ 354 (410)
+.++|+....+..+ .+.+|||.||+|++|.||
T Consensus 73 i~~~L~~~~~~~~~~ri~~ap~~gL~L~~v~y~ 105 (105)
T PF01416_consen 73 IAELLNSKLRPKAPPRILTAPAVGLYLFHVRYD 105 (105)
T ss_dssp CCCCHHHHSCTTS-TEEEEEEECCECCEECCTT
T ss_pred HHHHHhccCccccCCCcceeeCCCCCceEeeCc
Confidence 99999997644332 355999999999999996
No 19
>PF01416 PseudoU_synth_1: tRNA pseudouridine synthase; InterPro: IPR020097 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. This entry represents pseudouridine synthase I (TruA). TruA from Escherichia coli modifies positions uracil-38, U-39 and/or U-40 in tRNA [, ]. TruA contains one atom of zinc essential for its native conformation and tRNA recognition and has a strictly conserved aspartic acid that is likely to be involved in catalysis []. These enzymes are dimeric proteins that contain two positively charged, RNA-binding clefts along their surface. Each cleft contains a highly conserved aspartic acid located at its centre. The structural domains have a topological similarity to those of other RNA-binding proteins, though the mode of interaction with tRNA appears to be unique. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1VS3_B 2NR0_B 2NQP_D 1DJ0_A 2NRE_A.
Probab=98.07 E-value=2e-07 Score=78.14 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=62.5
Q ss_pred EEEeCC-CceeeeecCCCCCcHHHHHHHHHHHhhhhhcCC--------------ceeeeeeeccCCccccccCCEEEEEE
Q 015260 98 VMYFGQ-RFYGFASDGNMEPTVESEIFKALEKTRLLVADK--------------KESHYSRCGRTDKGVSSVGQVIAIYL 162 (410)
Q Consensus 98 iaY~Gt-~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~--------------~~~~~~r~gRTDkGVhA~~QVis~~~ 162 (410)
..|+|+ +|+||+.| +|++...+++|..+.++.... ...-+..++|||+|||+..++..+
T Consensus 3 ~~~~G~HdF~~f~~~----~~~~~~~~r~i~~~~~~~~~~~~~~i~g~~Fl~~~vR~~vg~~~~~~~G~~~~~~i~~~-- 76 (105)
T PF01416_consen 3 KLYVGTHDFSGFQKQ----KTVEKNTIRTIFSIDIIEEGDVVVEIHGNSFLRHQVRIMVGTLLRTGRGVHSLEQIAEL-- 76 (105)
T ss_dssp CEETCEEECCGCSSC----S-HHHHHCCCEEEEECCCCCCEEEEEEESS--TTHHHHHHCCCCHHHTTSCEEECCCCC--
T ss_pred ceeEecCCCcCCEEC----CcccccHHHHHHHHhhhcCCCEEEEEEecccccccchhhhHHHHHHhcCCCCHHHHHHH--
Confidence 479999 99999987 467777777777765421111 134477899999999999887442
Q ss_pred cCCccccCcCCCCCCccccccccccHHHHHHHHhccCCC---CeEEEEeEecC-CCCCcCCC
Q 015260 163 RSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPK---DIRVIGWSPAP-TDFSARFS 220 (410)
Q Consensus 163 ~s~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~---dIrV~~~~~V~-~~F~ARf~ 220 (410)
||..+|+ + ||+.+.+++ ..||++|+
T Consensus 77 --------------------------------L~~~~~~~~~~-ri~~ap~~gL~L~~v~y~ 105 (105)
T PF01416_consen 77 --------------------------------LNSKLRPKAPP-RILTAPAVGLYLFHVRYD 105 (105)
T ss_dssp --------------------------------HHHHSCTTS-T-EEEEEEECCECCEECCTT
T ss_pred --------------------------------HhccCccccCC-CcceeeCCCCCceEeeCc
Confidence 6666754 6 999999999 99999985
No 20
>PF10105 DUF2344: Uncharacterized protein conserved in bacteria (DUF2344); InterPro: IPR018768 This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function.
Probab=96.12 E-value=0.069 Score=50.07 Aligned_cols=114 Identities=20% Similarity=0.274 Sum_probs=82.9
Q ss_pred cHHHHHHHHHHHhhhhh----cCCceeeeeeeccCCccccccCCEEEEEEcCCccccCcCCCCCCccccccccccHHHHH
Q 015260 117 TVESEIFKALEKTRLLV----ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192 (410)
Q Consensus 117 TVE~~L~~AL~k~~li~----~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 192 (410)
-+...+++||.++|+=+ |=.....++-+.=.=-||.+.+-++.+.+...+ ++..+.
T Consensus 19 dl~r~~eRa~rRA~lp~a~SqGFnP~Pkisf~~aLpvGv~S~~E~~di~l~~~~--------------------~~~~~~ 78 (187)
T PF10105_consen 19 DLMRVFERALRRAGLPVAYSQGFNPHPKISFAPALPVGVESLAEYMDIELEEDI--------------------DPEEVL 78 (187)
T ss_pred HHHHHHHHHhhhcCCCeeecCCCCCCcceeecccccCceeeccEEEEEEEecCC--------------------CHHHHH
Confidence 45677999999999722 112345677788888999999999999986543 234688
Q ss_pred HHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeCCCCCHHHHHHHHhhcccee
Q 015260 193 RVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWRENLNLSAMESAGKKFVGEH 251 (410)
Q Consensus 193 ~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~~~LDie~M~~Aak~fvGtH 251 (410)
..||..||++|+|+++.++|....+ ....-..+.|.+.....+.+...++...|.--.
T Consensus 79 ~rLn~~lP~Gl~i~~~~~i~~~~~s-l~~~i~~~~Y~i~~~~~~~~~~~~~~~~~~~~~ 136 (187)
T PF10105_consen 79 ERLNAVLPEGLRILEAEEIPPKAPS-LMALINAAEYRITLPEIDEEELEEAIEAFLAAE 136 (187)
T ss_pred HHHHHhCCCCCEEEEEEEccCCCcc-hhhhcceEEEEEEecCCCHHHHHHHHHHHHCCC
Confidence 9999999999999999999844332 223335577777555777888888877775443
No 21
>cd01291 PseudoU_synth PseudoU_synth: Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). Pseudouridine synthases contains the RsuA/RluD, TruA, TruB and TruD families. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases. Some psi sites such as psi55,13,38 and 39 in tRNA are highly conserved, being in the same position in eubacteria, archeabacteria and eukaryotes. Other psi sites occur in a more restricted fashion, for example psi2604in 23S RNA made by E.coli RluF has only been detected in E.coli. Human dyskerin with the help of guide RNAs makes the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Mutations in human dyskerin cause X-linked dyskeratosis congenitas. Missense mutation in human PUS1 causes mitochondrial myopathy and sideroblastic anemia (MLASA).
Probab=90.23 E-value=0.7 Score=37.40 Aligned_cols=22 Identities=5% Similarity=-0.111 Sum_probs=17.8
Q ss_pred cEEEEEEEeccchhHhHHHHHHHH
Q 015260 287 QLCAIKIRGSAFLWHQVRCMVAVL 310 (410)
Q Consensus 287 ~~~~~~I~G~sFL~hQVR~MVg~L 310 (410)
..+.|++.. +.+||+|.|+.-|
T Consensus 65 ~~~~l~f~l--~~~~yat~~l~el 86 (87)
T cd01291 65 RALVLEFTL--PRGSYATMLLREL 86 (87)
T ss_pred ceEEEEEEc--CCcchHHHHHHHh
Confidence 456777777 9999999999865
No 22
>TIGR01213 conserved hypothetical protein TIGR01213. Members of this family show twilight-zone similarity to several predicted RNA pseudouridine synthases. All trusted members of this family are archaeal. Several eukaryotic homologs lack N-terminal homology including two CXXC motifs.
Probab=88.01 E-value=24 Score=36.98 Aligned_cols=160 Identities=14% Similarity=0.101 Sum_probs=98.7
Q ss_pred CCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCC--EEEEEEcCCccccCcCCCCCCccccccccccHHHHH
Q 015260 115 EPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQ--VIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYV 192 (410)
Q Consensus 115 ~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~Q--Vis~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 192 (410)
..+||+.|...+.+. .+ ...+.++.|||-|.-|--+|. -+-+.+-... ....+...+.
T Consensus 184 ~~SVeelI~~~v~~~---~~-~~~~~Fh~aGREDvDvRMLG~GRPFvlEi~~P~----------------rr~~dl~~le 243 (388)
T TIGR01213 184 PESVEELIASPFLKA---TG-GTDAYFHGAGREDVDVRMLGTGRPFVLEVKEPR----------------YRKIDLDPLE 243 (388)
T ss_pred CchHHHHHHHHHHHH---hC-CceeEEeccCccccceeeccCCCceEEEecCCc----------------cCCCCHHHHH
Confidence 469999998888875 33 357899999999999988864 2222221100 0011223567
Q ss_pred HHHhccCCCCeEEEEeEecCCCCC--cCCCCCCceeEEEee-CCCCCHHHHHHHHhhccce--ecceeeeecCCCCcccc
Q 015260 193 RVLNRVLPKDIRVIGWSPAPTDFS--ARFSCISREYKYFFW-RENLNLSAMESAGKKFVGE--HDFRNFCKMDAANVHNY 267 (410)
Q Consensus 193 ~~LN~~LP~dIrV~~~~~V~~~F~--ARf~c~~R~Y~Y~~~-~~~LDie~M~~Aak~fvGt--HDF~NF~k~~~~~~~~~ 267 (410)
..+|......|.|.+..-++..=- -+..-..++|+=+++ ..+++.+.++++++.|.|. |-...-...-......=
T Consensus 244 ~~IN~~~~g~V~v~~L~~~~~~~v~~ik~~~~~K~Y~alV~~~~~v~~e~L~~~~~~l~g~~I~QrTP~RV~hRRa~~~R 323 (388)
T TIGR01213 244 EEINTSGKGKVEVEGLKFATREEVEEVKEEKHRKVYRALVEVDGPVSDEDLEELCKELEGATIYQRTPLRVLHRRADLVR 323 (388)
T ss_pred HHHhhccCCCEEEEEeEEEcHHHHHHHhccCCceEEEEEEEECCCCCHHHHHHHHHhccCCEEEccCCceEEEecCCCce
Confidence 789998888999999875542100 011223589986665 5789999999999999882 11111110000011223
Q ss_pred eEEEEEEEEeeccccccCCcEEEEEEEeccch
Q 015260 268 KRHVTSFEISPCYISFEGNQLCAIKIRGSAFL 299 (410)
Q Consensus 268 ~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL 299 (410)
.|+|+++++...+ ...+.+.|.++|=+
T Consensus 324 ~R~I~~i~~~~i~-----~~~~~l~v~~qaGt 350 (388)
T TIGR01213 324 ERRVYQVDLSGLD-----GNHAELIIEAEGGL 350 (388)
T ss_pred EEEEEEEEEEEEc-----CCEEEEEEEecCCC
Confidence 4899999987642 34677777776533
No 23
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=85.13 E-value=1.5 Score=33.71 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=24.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
|-+-.++.++..|..|+.+||.||.-|++..+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34457788888888888888888888877644
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=81.27 E-value=3.1 Score=32.66 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=29.0
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLSLCRC 42 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~~~~~ 42 (410)
..+...++.|+.+.++|.+||+.|..++..+..
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ 35 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWRE 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999999887543
No 25
>PRK14554 putative pseudouridylate synthase; Provisional
Probab=78.61 E-value=44 Score=35.43 Aligned_cols=153 Identities=15% Similarity=0.104 Sum_probs=90.1
Q ss_pred CcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCC----EEEEEEcCCccccCcCCCCCCccccccccccHHHH
Q 015260 116 PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQ----VIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDY 191 (410)
Q Consensus 116 ~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~Q----Vis~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~~ 191 (410)
.+||+.|...+... .+ ...+.++.|||-|.-|--+|. |+-+.-+... ..+...+
T Consensus 220 ~SVeelI~~~i~~~---f~-~~~~~fh~aGREDvDVRmLG~GRPFViEi~~p~r~------------------~~~~~~l 277 (422)
T PRK14554 220 ESVEELIAKPVIEA---FG-GEDAVFHGAGREDVDARMLGTGRPFVIEVKEPRKR------------------KVDLEAL 277 (422)
T ss_pred CCHHHHHHHHHHHH---hC-CCceEEecCCCCCcceEecCCCCceEEEecCcccc------------------cCCHHHH
Confidence 59999998887775 32 457899999999999998887 3332211100 0011122
Q ss_pred HHHHhccCCCCeEEEEeEecCCCCCcC--CCCCCceeEEEee-CCCCCHHHHHHHHhhcccee-cceeeeecCCC-Cccc
Q 015260 192 VRVLNRVLPKDIRVIGWSPAPTDFSAR--FSCISREYKYFFW-RENLNLSAMESAGKKFVGEH-DFRNFCKMDAA-NVHN 266 (410)
Q Consensus 192 ~~~LN~~LP~dIrV~~~~~V~~~F~AR--f~c~~R~Y~Y~~~-~~~LDie~M~~Aak~fvGtH-DF~NF~k~~~~-~~~~ 266 (410)
. +|..-...|.|.....++..--.+ .....|+|+=.++ ..+++.+.+.++++.|.|.- .=+..-+.... ....
T Consensus 278 ~--~~~~~~g~V~v~~l~~~~~~~~~~ik~~~~~K~YralV~~~~~v~~e~l~~~~~~l~~~~I~QrTP~RV~hRR~~~~ 355 (422)
T PRK14554 278 E--EEINADGKVEVENLRFATRKEVERIKEEKASKTYRALVESDEPVSEEELEKLLDELSGATIEQRTPRRVKHRRADLV 355 (422)
T ss_pred H--HhhccCCCEEEEEEEEEcHHHHHHHhcCCCceEEEEEEEECCCCCHHHHHHHHHhccCcEeeccCcHhhhhhccccc
Confidence 2 344446789999888665321111 1122389986665 56788888999988887641 10111111100 1123
Q ss_pred ceEEEEEEEEeeccccccCCcEEEEEEEecc
Q 015260 267 YKRHVTSFEISPCYISFEGNQLCAIKIRGSA 297 (410)
Q Consensus 267 ~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~s 297 (410)
-.|+|+++++...+ ...+.+.|.++|
T Consensus 356 R~R~I~~i~~~~i~-----~~~~~l~i~~ea 381 (422)
T PRK14554 356 RVRKVYDISGELID-----DKHFELRIKCEG 381 (422)
T ss_pred eeeEEEEEEEEEEc-----CcEEEEEEEEec
Confidence 45899999887642 345666666654
No 26
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=74.69 E-value=5.4 Score=29.21 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 16 LEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 16 ~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+++|+++|..||.+++.|+..++.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777775
No 27
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=72.66 E-value=2.2 Score=31.17 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 015260 15 QLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~ 36 (410)
.-|.|.-||-|||.|++-|+++
T Consensus 12 ~~e~l~vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 12 DQEQLRVRVSELEEEVRTLRKI 33 (48)
T ss_pred CcchheeeHHHHHHHHHHHHHH
Confidence 4578999999999999999886
No 28
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=72.00 E-value=4.5 Score=31.07 Aligned_cols=29 Identities=28% Similarity=0.540 Sum_probs=24.3
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 8 LISSLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 8 ~~~~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
+--+-+.++|.|..+|.+|+..|.+|..+
T Consensus 8 Lm~AVrEEVevLK~~I~eL~~~n~~Le~E 36 (59)
T PF01166_consen 8 LMYAVREEVEVLKEQIAELEERNSQLEEE 36 (59)
T ss_dssp GGGT-TTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466889999999999999999999875
No 29
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=71.93 E-value=9.3 Score=30.53 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=18.6
Q ss_pred hHHHHHhHhHHHHHHHH-------HHHHHHHHHHHHh
Q 015260 6 QELISSLQSQLEALQNR-------VKELEADNAKLLS 35 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r-------~~~le~~~~~~~~ 35 (410)
-+||..++.+++.|..+ -.+|+.+|++|+.
T Consensus 17 veti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 17 VETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 36777777777777777 4444444444443
No 30
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=69.21 E-value=7.5 Score=31.48 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.1
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
+.++..+-..|..|+|.||+|+++++..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677788899999999999999998764
No 31
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=69.15 E-value=6.2 Score=24.82 Aligned_cols=17 Identities=29% Similarity=0.603 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 015260 15 QLEALQNRVKELEADNA 31 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~ 31 (410)
+++.|+.||..||.++.
T Consensus 2 E~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLS 18 (23)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 57789999999988765
No 32
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=64.15 E-value=7.9 Score=40.85 Aligned_cols=30 Identities=47% Similarity=0.592 Sum_probs=21.3
Q ss_pred cchhhHHHHHhHhHHHHHHHHHHHHHHHHH
Q 015260 2 SEAKQELISSLQSQLEALQNRVKELEADNA 31 (410)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~r~~~le~~~~ 31 (410)
+++....+..|..|+.+|++||+|||++++
T Consensus 20 a~a~a~~i~~L~~ql~aLq~~v~eL~~~la 49 (514)
T PF11336_consen 20 AAATADQIKALQAQLQALQDQVNELRAKLA 49 (514)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566777888888888888887755
No 33
>COG1258 Predicted pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=61.23 E-value=1.4e+02 Score=31.26 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=98.0
Q ss_pred CCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCC----EEEEEEcCCccccCcCCCCCCccccccccccHHH
Q 015260 115 EPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQ----VIAIYLRSNIKECNTNNASMGETVQEEQIEDEID 190 (410)
Q Consensus 115 ~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~Q----Vis~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~ 190 (410)
..|||+.|-..+.++ .+ ..+..+++|||-|--|--+|+ |+-+.-+... ..+...
T Consensus 190 ~~sve~~i~~~~~~~---f~-g~~~~fhgAGREDvDvRMLG~GRPfVlEvk~Pr~R------------------~~dl~~ 247 (398)
T COG1258 190 PESVEELIKQPIKEA---FG-GLDAKFHGAGREDVDVRMLGTGRPFVLEVKEPRRR------------------NVDLDE 247 (398)
T ss_pred cccHHHHHHHHHHHh---cc-CceeEEEccCCCccceeeecCCCceEEEecCcccc------------------cCChHH
Confidence 368999888866664 32 357889999999999988884 3333211100 012234
Q ss_pred HHHHHhccCCCCeEEEEeEecCCCCCcCC---CCCCceeEEEee-CCCCCHHHHHHHHhhccc-eecceeeeecCCC-Cc
Q 015260 191 YVRVLNRVLPKDIRVIGWSPAPTDFSARF---SCISREYKYFFW-RENLNLSAMESAGKKFVG-EHDFRNFCKMDAA-NV 264 (410)
Q Consensus 191 ~~~~LN~~LP~dIrV~~~~~V~~~F~ARf---~c~~R~Y~Y~~~-~~~LDie~M~~Aak~fvG-tHDF~NF~k~~~~-~~ 264 (410)
+...+|.-. .+.|....-+...=-.+. .-..++|+=++. ..+++.+.+.+++.-+.| +=.=+.+....-. ..
T Consensus 248 l~~~in~~~--~vev~~l~f~~~e~v~~ik~~~~~rK~YrAlV~~~~~v~~e~l~~~~~~L~g~~I~QrTP~RV~hrRad 325 (398)
T COG1258 248 LEEEINRGG--KVEVFDLEFVGREEVEEIKETERHRKVYRALVYSDRPVSDEKLEEVLGSLEGKTIRQRTPRRVLHRRAD 325 (398)
T ss_pred HHHHhccCC--cEEEEEEEecCHHHHHHHHhccccceeEEEEEEECCCcCHHHHHHHHhhccCcEEeecChHHHhhhhcc
Confidence 567789876 788888877653211111 123577877664 678999999999999999 4333333222100 01
Q ss_pred ccceEEEEEEEEeeccccccCCcEEEEEEEeccchh
Q 015260 265 HNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLW 300 (410)
Q Consensus 265 ~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~ 300 (410)
.--+|.|+.+++... +...+.+.|.+.+=||
T Consensus 326 lvR~R~V~~l~~~~~-----~~~~~~~~i~~egGlY 356 (398)
T COG1258 326 LVRIRRVYELSLDLI-----DDRHAELEIEAEGGLY 356 (398)
T ss_pred cceEEEEEEeeeeec-----cCceEEEEEEecccce
Confidence 234578888888753 3456778887776443
No 34
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=61.18 E-value=18 Score=28.17 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=23.8
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
...++.++++|..++.+|++++.+|+.+++.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777888888888888888888877764
No 35
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=59.83 E-value=13 Score=28.69 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 13 QSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
..+++.|..||.-||+|.++++..+..
T Consensus 20 ~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 20 LLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999998764
No 36
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=57.62 E-value=24 Score=30.49 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=21.8
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
|-+..++.++..|..|+..||+||.-|+.-.+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~sp 99 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLASP 99 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 444467777777777777777777766654443
No 37
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=57.33 E-value=19 Score=30.32 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=28.2
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 8 LISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 8 ~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+...+..+.+.|..++++|+++|.+|..++..
T Consensus 74 l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~ 105 (109)
T PF03980_consen 74 LAPYKKKEREQLNARLQELEEENEALAEEIQE 105 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999998875
No 38
>PHA03155 hypothetical protein; Provisional
Probab=57.04 E-value=11 Score=32.70 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 13 QSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
...+|+|..+++.|+-||..|++++..
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356899999999999999999999864
No 39
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=56.36 E-value=26 Score=25.73 Aligned_cols=28 Identities=36% Similarity=0.489 Sum_probs=25.3
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
+.+|+.++++|..+|+-|+.-..+-++-
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999988875
No 40
>smart00338 BRLZ basic region leucin zipper.
Probab=55.51 E-value=27 Score=26.66 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 15 QLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+..|..+|+.|+++|..|..+++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIE 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555443
No 41
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=55.33 E-value=23 Score=26.24 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=21.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.....+.|..+|++|+.+|..|..+++.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888888877653
No 42
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=55.09 E-value=19 Score=33.19 Aligned_cols=29 Identities=45% Similarity=0.519 Sum_probs=24.8
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.++.+++.|..++++||+|+++|.+.++.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999887664
No 43
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.41 E-value=22 Score=30.29 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=24.3
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
...++.+++++.+++++|+++|++|+.++..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888888887764
No 44
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=52.33 E-value=26 Score=28.62 Aligned_cols=28 Identities=50% Similarity=0.668 Sum_probs=22.2
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
+..++..++.|..||.+.+.|+.+|.+.
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~E 52 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888988888888888765
No 45
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=51.53 E-value=16 Score=36.12 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 015260 17 EALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 17 ~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
++-++||-+||.|+++|++||+.
T Consensus 118 ~~AlqKIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 118 EAALQKISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578999999999999999986
No 46
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=49.58 E-value=20 Score=30.88 Aligned_cols=26 Identities=42% Similarity=0.560 Sum_probs=20.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 13 QSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+++..+|..||.+||+++++|..++.
T Consensus 82 ~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 82 QSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667888999999999999987653
No 47
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=49.33 E-value=23 Score=31.56 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=31.6
Q ss_pred cchhhHHHHHhHhHHHHHHHHHHHHHHH--HHHHHhhhhh
Q 015260 2 SEAKQELISSLQSQLEALQNRVKELEAD--NAKLLSKLSL 39 (410)
Q Consensus 2 ~~~~~~~~~~~~~~~~~l~~r~~~le~~--~~~~~~~~~~ 39 (410)
++++|.|+-+|=.++|.+.+++++|++. +..+...+..
T Consensus 62 a~anP~tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~ 101 (139)
T PF13935_consen 62 AAANPATVLALLDELERAQQRIAELEQECENEDIALDVQK 101 (139)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999977 7766665554
No 48
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=49.21 E-value=25 Score=30.78 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
..+|+|..+++.|+-||..|++++..
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 56899999999999999999999876
No 49
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=48.36 E-value=27 Score=34.30 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=28.7
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 015260 8 LISSLQSQLEALQNRVKELEADNAKLLSKLSLCRC 42 (410)
Q Consensus 8 ~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~~~~ 42 (410)
...-..+|-+.+++|+.|||+|+.++.++++.++.
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~ 114 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRR 114 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999999999999988887654
No 50
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=46.71 E-value=41 Score=26.71 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=26.2
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
...+..+++.+.+++.+|+.|+.+|+.+++.
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999888764
No 51
>smart00338 BRLZ basic region leucin zipper.
Probab=46.27 E-value=35 Score=26.04 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=18.1
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
+..+..+.+.|..+|..|+.|+..|++++
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666666666666666666654
No 52
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=45.20 E-value=29 Score=28.19 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.++.+|++|-++||++++.|..++-.
T Consensus 2 ~~L~~l~~~k~~Le~~L~~lE~qIy~ 27 (80)
T PF09340_consen 2 KELKELLQKKKKLEKDLAALEKQIYD 27 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999998864
No 53
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=44.55 E-value=36 Score=29.46 Aligned_cols=29 Identities=28% Similarity=0.539 Sum_probs=25.4
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 8 LISSLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 8 ~~~~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
+.-+-|.++|.|+..|+|||+.|.+|...
T Consensus 61 LmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 61 LMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999775
No 54
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.91 E-value=51 Score=26.91 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=18.9
Q ss_pred HHHHHhHhHHHHHHHHHHH--------------HHHHHHHHHhhh
Q 015260 7 ELISSLQSQLEALQNRVKE--------------LEADNAKLLSKL 37 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~--------------le~~~~~~~~~~ 37 (410)
+||.-++.+++.|..+=.. |+.+|++|+...
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6777777777777554222 555666666554
No 55
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=43.01 E-value=31 Score=25.94 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 015260 17 EALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 17 ~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.+...||.+||.||..|+.+|..
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~ 47 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELER 47 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999874
No 56
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=42.39 E-value=61 Score=21.96 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=20.2
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLS 35 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~ 35 (410)
.+-+++|.|++|-++|.-.+++|..
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4668899999999999999998865
No 57
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=41.75 E-value=21 Score=38.39 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 15 QLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
++|+|.++|+||++++..|..+++
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccc
Confidence 555666666666655555554443
No 58
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=41.52 E-value=33 Score=26.10 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=12.7
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHH
Q 015260 11 SLQSQLEALQNRVKELEADNAKL 33 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~ 33 (410)
..+.+...+.++++++|+|+++|
T Consensus 45 ~~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 45 RLRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555666666665554
No 59
>COG5011 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.91 E-value=58 Score=31.24 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhhh----cCCceeeeeeeccCCccccccCCEEEEEEcCCccccCcCCCCCCccccccccccHHHHHHHH
Q 015260 120 SEIFKALEKTRLLV----ADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVL 195 (410)
Q Consensus 120 ~~L~~AL~k~~li~----~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L 195 (410)
..+.++..++|+-+ |-....+++.+.=---|+..-|-.+-|++.... .+..+.+.|
T Consensus 23 RlidR~iRRAglpiayT~GFhP~prmsia~alpvG~~ssge~fd~eL~e~v--------------------~~dk~~etl 82 (228)
T COG5011 23 RLIDRTIRRAGLPIAYTGGFHPHPRMSIAQALPVGIYSSGEIFDFELTEEV--------------------SEDKFKETL 82 (228)
T ss_pred HHHHHHHHhcCCceeecCCCCCCCceeeccccccccccCceEEEEEeeeec--------------------CcHHHHHHH
Confidence 34566677777622 111234566666667788888888888764322 345789999
Q ss_pred hccCCCCeEEEEeEecCC
Q 015260 196 NRVLPKDIRVIGWSPAPT 213 (410)
Q Consensus 196 N~~LP~dIrV~~~~~V~~ 213 (410)
|..||+|+.+..+..++.
T Consensus 83 ~~~lp~Dl~~~~v~~iD~ 100 (228)
T COG5011 83 NKALPNDLPAYDVEKIDK 100 (228)
T ss_pred HHhCCCCcchhheeeecC
Confidence 999999999999998864
No 60
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=39.85 E-value=49 Score=26.67 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=17.9
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLS 35 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~ 35 (410)
..+..+..++.||.+||+.++.|..
T Consensus 54 ~q~~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 54 AQKAVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666777888888888887754
No 61
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=39.59 E-value=75 Score=24.13 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
..++.|..+|.+|+.+|..|+..+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~ 49 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKEL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 62
>PHA03162 hypothetical protein; Provisional
Probab=38.94 E-value=37 Score=30.32 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 13 QSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
...+|+|..+|+.|+-||..|++++..
T Consensus 12 ~~tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 12 QPTMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999999999999864
No 63
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.82 E-value=54 Score=29.77 Aligned_cols=35 Identities=20% Similarity=0.380 Sum_probs=21.1
Q ss_pred hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 5 KQELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 5 ~~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
++|....+..++..|...+++|+.++..|.+.++.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~ 104 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELAS 104 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666666666666554
No 64
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=38.58 E-value=35 Score=21.03 Aligned_cols=14 Identities=50% Similarity=0.601 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhhh
Q 015260 24 KELEADNAKLLSKL 37 (410)
Q Consensus 24 ~~le~~~~~~~~~~ 37 (410)
|+||++.++|..+.
T Consensus 4 k~lEa~~qkLe~e~ 17 (21)
T PF02370_consen 4 KQLEADHQKLEAEK 17 (21)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776653
No 65
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.05 E-value=45 Score=25.83 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=20.8
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHH
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKL 33 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~ 33 (410)
+..++.+++.|..+.++|++++++|
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5578888888888888888888888
No 66
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=38.01 E-value=39 Score=33.28 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=22.9
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 015260 8 LISSLQSQLEALQNRVKELEADNAKLLS 35 (410)
Q Consensus 8 ~~~~~~~~~~~l~~r~~~le~~~~~~~~ 35 (410)
++...+.-++++..||+|||++++++..
T Consensus 49 ~vlvQE~AL~~a~~ri~eLe~ql~q~~~ 76 (247)
T PF09849_consen 49 TVLVQEQALKQAQARIQELEAQLQQAQA 76 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5566778889999999999999988433
No 67
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.89 E-value=55 Score=28.09 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=18.8
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
+..+-.++++|...|.+|.+||++|+-.
T Consensus 17 l~~l~~~~~~LK~~~~~l~EEN~~L~~E 44 (107)
T PF06156_consen 17 LGQLLEELEELKKQLQELLEENARLRIE 44 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777888877776665443
No 68
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=37.71 E-value=42 Score=28.19 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 16 LEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 16 ~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+-.|++||.+|++|+..|+++++.
T Consensus 73 vl~LLd~i~~Lr~el~~L~~~l~~ 96 (101)
T PRK10265 73 ALTLLDEIAHLKQENRLLRQRLSR 96 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999998764
No 69
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=37.62 E-value=52 Score=32.89 Aligned_cols=28 Identities=32% Similarity=0.444 Sum_probs=22.1
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.-.+.+++..+++.||+||++|++.+..
T Consensus 81 ~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 81 ELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3345666788999999999999998653
No 70
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=37.07 E-value=50 Score=30.75 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 015260 13 QSQLEALQNRVKELEADNAKLL 34 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~ 34 (410)
|.++|.+..+++.||+.++++.
T Consensus 124 r~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555543
No 71
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.47 E-value=39 Score=30.72 Aligned_cols=34 Identities=38% Similarity=0.460 Sum_probs=25.3
Q ss_pred hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 5 KQELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 5 ~~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+.+ +..++.++..|...++.|++|+..|.+.++.
T Consensus 78 d~e-i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~ 111 (169)
T PF07106_consen 78 DAE-IKELREELAELKKEVKSLEAELASLSSEPTN 111 (169)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 344 6688888888888888888888877776643
No 72
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.16 E-value=62 Score=28.02 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=16.4
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLS 35 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~ 35 (410)
+..+-.++++|.+.|++|.+||+.|+-
T Consensus 17 l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 17 LGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666677766666665543
No 73
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.82 E-value=39 Score=36.28 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+.+.+.++|++||.|+++|++++.
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888899999999999974
No 74
>PF03955 Adeno_PIX: Adenovirus hexon-associated protein (IX); InterPro: IPR005641 Hexon (IPR000736 from INTERPRO) is the major coat protein from adenovirus type 2. Hexon forms a homo-trimer, 240 copies of which are present in the capsid, organised so that 12 lie on each of the 20 facets of this structure. The central 9 hexons in a facet are cemented together by 12 copies of protein IX []. Protein IX is not neccessarily required for viral replication, but has been shown to affect several processes including DNA-packaging capacity, thermostability, and the transcriptional activity of several promoters. For more information see [].; GO: 0031423 hexon binding, 0044423 virion part; PDB: 3IYN_T.
Probab=33.67 E-value=45 Score=28.83 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=25.8
Q ss_pred hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 5 KQELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 5 ~~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+.+....+..++.++.++++.|.+++++|+++|..
T Consensus 74 ~~~~~~~l~~~~~~~~~~l~~l~a~Le~l~~~L~~ 108 (109)
T PF03955_consen 74 DVGSYSELKANLTALEDKLTALLAQLEALKQQLAE 108 (109)
T ss_dssp S----SSTTSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667778888899999999999999998763
No 75
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=33.23 E-value=71 Score=24.56 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.+-.+|++.+..|+++|..|+..+.+
T Consensus 33 ~~R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 33 LDRAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567888899999999999988763
No 76
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=32.61 E-value=78 Score=24.39 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=16.5
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+++.-++.|-+|+++.|++.+..+.+++
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666555544
No 77
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=32.24 E-value=68 Score=25.93 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=21.9
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
..++.++++|.++.+.||+-++.|..+|..
T Consensus 38 ~~d~~~L~~L~~~a~rm~eRI~tLE~ILda 67 (75)
T PF06667_consen 38 EEDEQRLQELYEQAERMEERIETLERILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345667777778888888888888777653
No 78
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=32.04 E-value=52 Score=33.42 Aligned_cols=25 Identities=52% Similarity=0.646 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 15 QLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.++.|.+|++.||.||.+|++..+.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~ 185 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQ 185 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
No 79
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=31.87 E-value=69 Score=25.85 Aligned_cols=29 Identities=24% Similarity=0.193 Sum_probs=20.6
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.+..++++|.++.+.||+-++.|..++..
T Consensus 39 ~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 39 DDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566777777777777777777777653
No 80
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=31.72 E-value=65 Score=27.82 Aligned_cols=30 Identities=33% Similarity=0.378 Sum_probs=22.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
+.+..+..+.+.|.++...||+|+..|++.
T Consensus 57 ~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 57 RQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345567777888888888888888888765
No 81
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.81 E-value=65 Score=34.60 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=28.0
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 6 QELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+|++++-.++.+|+.++++|+++|++|+++-+
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~ 90 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENE 90 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999988888876644
No 82
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=29.95 E-value=1.2e+02 Score=24.24 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=20.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
|....++..+.+++..|..|..|++.|+.+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~ 33 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEK 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777666664
No 83
>PRK09458 pspB phage shock protein B; Provisional
Probab=29.73 E-value=80 Score=25.57 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=23.9
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
..++.++++|.++.+.|++-++.|.++|..
T Consensus 38 ~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 38 QEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 356677888888888888888888888764
No 84
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=29.63 E-value=84 Score=26.61 Aligned_cols=29 Identities=28% Similarity=0.475 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLSLCRC 42 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~~~~~ 42 (410)
-+.+-|++.+-+||.+|.+|..+|+.=.+
T Consensus 15 EEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 15 EEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566889999999999999999987333
No 85
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=29.23 E-value=1.5e+02 Score=21.84 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=21.3
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLS 35 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~ 35 (410)
+-+..++.++..|.....+|+.+++.|..
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556777788888888888888877764
No 86
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.95 E-value=1.4e+02 Score=22.95 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=21.6
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+..|.+++-.|-.+|.+|..++.-|+..+.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777788888888887777776654
No 87
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=28.75 E-value=1.2e+02 Score=23.70 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=23.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+++..|...+.+..+.|..|+++++.|..++..
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777788888888888888887764
No 88
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.43 E-value=81 Score=30.81 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=20.3
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.++++.+++..|++.||.||.+|...+..
T Consensus 160 ele~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 160 ELEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777888888877777665543
No 89
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.90 E-value=98 Score=26.31 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=23.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLS 35 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~ 35 (410)
..+..++.+.++|.++.++|++|+++|++
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34557788888888888888888888876
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=27.71 E-value=1e+02 Score=30.50 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=27.9
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 8 LISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 8 ~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
....|-.-++.-+.||..||++|.+|..++..
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~ 36 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEE 36 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34577888899999999999999999999875
No 91
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.61 E-value=90 Score=25.88 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=23.1
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+..+++.|..++..|+++|..|..++.
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3467788899999999999999988764
No 92
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=27.30 E-value=1e+02 Score=33.01 Aligned_cols=8 Identities=38% Similarity=0.800 Sum_probs=4.1
Q ss_pred CCCCCccc
Q 015260 52 GVEDGTTL 59 (410)
Q Consensus 52 ~~~~~~~~ 59 (410)
++.++|.+
T Consensus 463 eIqegtI~ 470 (493)
T KOG0804|consen 463 EIQEGTIL 470 (493)
T ss_pred hhcCceee
Confidence 45555544
No 93
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.26 E-value=83 Score=26.90 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=14.7
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHH
Q 015260 9 ISSLQSQLEALQNRVKELEADNA 31 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~ 31 (410)
...-|..++.|..||.+||+.+.
T Consensus 68 l~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 68 LLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666777777777776654
No 94
>PHA01750 hypothetical protein
Probab=26.99 E-value=1.4e+02 Score=23.74 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=22.6
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 6 QELISSLQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
+|+- .++.+++++..|..+||+++..++..+
T Consensus 42 ~ELd-NL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 42 SELD-NLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHH-HHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3443 677788888888888888888777654
No 95
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=26.98 E-value=79 Score=31.88 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=21.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.+.+.|+|..-++.||++|++|+.+++.
T Consensus 246 kRae~E~l~ge~~~Le~rN~~LK~qa~~ 273 (294)
T KOG4571|consen 246 KRAEKEALLGELEGLEKRNEELKDQASE 273 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888888888888888765
No 96
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=26.97 E-value=1.1e+02 Score=27.49 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=23.7
Q ss_pred hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 015260 5 KQELISSLQSQLEALQNRVKELEADNAKLLS 35 (410)
Q Consensus 5 ~~~~~~~~~~~~~~l~~r~~~le~~~~~~~~ 35 (410)
-+..|..|++.++.+..+++.||..+..+..
T Consensus 102 ~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~ 132 (146)
T PF08702_consen 102 QPSNIRVLQNILRSNRQKIQRLEQDIDQQER 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777888888888888888888887654
No 97
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=26.89 E-value=79 Score=28.17 Aligned_cols=31 Identities=26% Similarity=0.301 Sum_probs=26.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSKLSLCRC 42 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~~~~~~~ 42 (410)
.+..++.|...|++||+|-..|.+++..|.+
T Consensus 49 e~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~ 79 (129)
T PF15372_consen 49 EQMSVESLNQLLKQLEKEKRSLENQLKDYEW 79 (129)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999988764
No 98
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=26.63 E-value=1e+02 Score=30.73 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=13.9
Q ss_pred HHHhccCCCCeEEEEeEecC
Q 015260 193 RVLNRVLPKDIRVIGWSPAP 212 (410)
Q Consensus 193 ~~LN~~LP~dIrV~~~~~V~ 212 (410)
..+....|++|.|=-+..|.
T Consensus 225 SGlgg~fP~Gl~VG~V~~v~ 244 (283)
T TIGR00219 225 SGLGGRFPEGYPIGVVTSVH 244 (283)
T ss_pred CCCCCcCCCCCEEEEEEEEE
Confidence 34556678888887777764
No 99
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.32 E-value=1.1e+02 Score=25.52 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=24.4
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
..-+..+..|...++.|..||.+|+.++..
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~ 74 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDT 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888999999999999988875
No 100
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=26.31 E-value=1.1e+02 Score=30.52 Aligned_cols=36 Identities=33% Similarity=0.557 Sum_probs=30.3
Q ss_pred chhhHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 3 EAKQELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
++..|....+++|+.+|..|.+.||.+|++|+-.+.
T Consensus 41 egSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e 76 (333)
T KOG1853|consen 41 EGSREIEAELESQLDQLETRNRDLETRNQRLTTEQE 76 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455688889999999999999999999998876543
No 101
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=26.20 E-value=80 Score=25.89 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 015260 17 EALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 17 ~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.|..++++|+++..++.++++
T Consensus 3 ~~l~~~~~~L~~~~~~l~~~i~ 24 (83)
T PF07061_consen 3 ESLEAEIQELKEQIEQLEKEIS 24 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554444444433
No 102
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=26.19 E-value=64 Score=34.86 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+++.|. +|++|++|+++|++|+.
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 3444444 99999999999999876
No 103
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.00 E-value=1.1e+02 Score=29.22 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=29.3
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 015260 6 QELISSLQSQLEALQNRVKELEADNAKLLSKLSLC 40 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~~ 40 (410)
++.+.+...-...+-.||+.|++|+.+++.|+++-
T Consensus 18 ~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 18 QDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677777888999999999999999999973
No 104
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.97 E-value=1.2e+02 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=26.5
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
-..+.++..|+++-+|||..++.|..++=.
T Consensus 13 e~~kaEL~elikkrqe~eetl~nLe~qIY~ 42 (135)
T KOG3856|consen 13 EDTKAELAELIKKRQELEETLANLERQIYA 42 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999999998753
No 105
>PRK10884 SH3 domain-containing protein; Provisional
Probab=25.50 E-value=1.2e+02 Score=28.86 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=18.6
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.++..++++-+.+.+|+++|++|++++..
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666678888888777764
No 106
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.71 E-value=2.1e+02 Score=26.89 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=21.6
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.-++++++|+.+|.+||.+++++++.++.
T Consensus 103 ~~~~e~~elr~~~~~l~~~i~~~~~~~~~ 131 (181)
T KOG3335|consen 103 KRKQEIMELRLKVEKLENAIAELTKFFSQ 131 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888888888888877777665
No 107
>PTZ00464 SNF-7-like protein; Provisional
Probab=24.44 E-value=1.4e+02 Score=28.75 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=25.4
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 6 QELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.+++..++..++.|..||+.|+.|+++.+..+.+
T Consensus 17 ~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~ 50 (211)
T PTZ00464 17 EDASKRIGGRSEVVDARINKIDAELMKLKEQIQR 50 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888877776654
No 108
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.42 E-value=1.4e+02 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.5
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
....++.+|..|++.||.++.++..+++.
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999988888875
No 109
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=24.34 E-value=86 Score=25.26 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=13.1
Q ss_pred HHHHHhHhHHHHHHHHHHHHHH
Q 015260 7 ELISSLQSQLEALQNRVKELEA 28 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~ 28 (410)
+.....+..+++|-.||.+||+
T Consensus 57 ~~L~~~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 57 AVLARTREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556666666666666664
No 110
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=24.16 E-value=92 Score=24.80 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 015260 18 ALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 18 ~l~~r~~~le~~~~~~~~~~ 37 (410)
+|..+|..|...+..|..++
T Consensus 46 ~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 46 ALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443
No 111
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=23.86 E-value=79 Score=25.00 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhc
Q 015260 17 EALQNRVKELEADNAKLLSKLSLCRCE 43 (410)
Q Consensus 17 ~~l~~r~~~le~~~~~~~~~~~~~~~~ 43 (410)
|.|..||++|...|+.|..-+..|...
T Consensus 1 erL~~~ie~L~~~n~~L~~~le~~k~~ 27 (67)
T PF10506_consen 1 ERLKRRIEELKSQNEMLSSTLEERKQQ 27 (67)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999998888776643
No 112
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.85 E-value=2.2e+02 Score=23.36 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
-..|+.+++.||..||+|-+.+...++.
T Consensus 12 a~~QLrafIerIERlEeEk~~i~~dikd 39 (85)
T COG3750 12 AAGQLRAFIERIERLEEEKKTIADDIKD 39 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999887764
No 113
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.50 E-value=1.9e+02 Score=21.00 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=18.3
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.++..-+.|...-..|..||+.|++++.
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666677776666654
No 114
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.48 E-value=2.2e+02 Score=21.46 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=16.3
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 8 LISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 8 ~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+..|+..++.|......|..++..|+..+.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555443
No 115
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.29 E-value=1.2e+02 Score=29.52 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=13.9
Q ss_pred HHHhccCCCCeEEEEeEec
Q 015260 193 RVLNRVLPKDIRVIGWSPA 211 (410)
Q Consensus 193 ~~LN~~LP~dIrV~~~~~V 211 (410)
..+....|++|.|=-+..|
T Consensus 224 SGl~g~fP~Gi~VG~V~~v 242 (276)
T PRK13922 224 SGLGGIFPAGLPVGKVTSV 242 (276)
T ss_pred CCCCCcCCCCCEEEEEEEE
Confidence 3455678888888777777
No 116
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=23.23 E-value=1.6e+02 Score=24.12 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=24.7
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
..+..+++.|.+...+|+.|+.+|+-+++.
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677889999999999999999887664
No 117
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.15 E-value=1.7e+02 Score=25.32 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=28.5
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+.+..+..++..|+..-.+|+-||+.|+..++.
T Consensus 22 ~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 22 KELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688899999999999999999999998874
No 118
>PRK14127 cell division protein GpsB; Provisional
Probab=23.08 E-value=1.1e+02 Score=26.33 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
...+.|.+.+.+|+++|++|+.++..
T Consensus 37 ~dye~l~~e~~~Lk~e~~~l~~~l~e 62 (109)
T PRK14127 37 KDYEAFQKEIEELQQENARLKAQVDE 62 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777776654
No 119
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.09 E-value=1.9e+02 Score=23.28 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=16.4
Q ss_pred HHHHHhHhHHHHHHHH--------------HHHHHHHHHHHHhhh
Q 015260 7 ELISSLQSQLEALQNR--------------VKELEADNAKLLSKL 37 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r--------------~~~le~~~~~~~~~~ 37 (410)
+||.-++.++|.|..+ ...||.||++|+++.
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555332 335566666666553
No 120
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=21.95 E-value=1.6e+02 Score=25.27 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=20.4
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.++.++.+|.+.+.+|+.|++=|++.+.
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888887766543
No 121
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=21.92 E-value=1.5e+02 Score=28.08 Aligned_cols=33 Identities=27% Similarity=0.401 Sum_probs=27.2
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 6 QELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.+++=.+-|++.|+.|+++||.+++.|-....
T Consensus 39 ~~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar 71 (225)
T PF04340_consen 39 GGAVSLVERQLERLRERNRQLEEQLEELIENAR 71 (225)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347777888999999999999999999877654
No 122
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.84 E-value=1.5e+02 Score=22.73 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 13 QSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
..+++.|...+..|+.+++++...|++
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL~n 29 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKLSN 29 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 467888999999999999999999886
No 123
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=21.82 E-value=1.4e+02 Score=23.19 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
..+.+|-.||--|.+|.++|+.++..
T Consensus 25 lsV~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 25 LSVAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788899999999999999998764
No 124
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=21.72 E-value=1.7e+02 Score=26.87 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=24.0
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
...+.+...|..+|.+|+++|.+|...+++
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677778899999999999999876554
No 125
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.67 E-value=2.6e+02 Score=21.69 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=14.7
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+..+..--.|.++|++++.+|+.++.
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445566666666666666543
No 126
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=21.55 E-value=96 Score=25.05 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 015260 16 LEALQNRVKELEADNAKLL 34 (410)
Q Consensus 16 ~~~l~~r~~~le~~~~~~~ 34 (410)
+-.|++||..|++++..|+
T Consensus 65 il~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 65 ILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4568899999999998886
No 127
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.02 E-value=2.1e+02 Score=24.63 Aligned_cols=34 Identities=18% Similarity=0.301 Sum_probs=22.7
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSLCRC 42 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~~~~ 42 (410)
...+..+.+.|.+++++|++-...|...+..|.+
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 114 (126)
T cd04785 81 DAIARAHLADVRARIADLRRLEAELKRMVAACSG 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3445666777777777777777777776666554
No 128
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=20.82 E-value=1.3e+02 Score=25.97 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=20.9
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
...+...|.+|.++||+||.-|+-++
T Consensus 70 ~~~e~~rlkkk~~~LeEENNlLklKi 95 (108)
T cd07429 70 SGREVLRLKKKNQQLEEENNLLKLKI 95 (108)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999776654
No 129
>PRK14127 cell division protein GpsB; Provisional
Probab=20.76 E-value=1.9e+02 Score=25.02 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=23.3
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.+..+...|..++..|+++++.++.+++.
T Consensus 41 ~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 41 AFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 55667888888888888888888887663
No 130
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=20.73 E-value=1.4e+02 Score=29.08 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=26.0
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.++..+.+.|..++++||.++.+|+.++..
T Consensus 14 ~~~~~e~~~Lk~kir~le~~l~~Lk~~l~~ 43 (236)
T PF12017_consen 14 RTLKIENKKLKKKIRRLEKELKKLKQKLEK 43 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678899999999999999999998865
No 131
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=20.63 E-value=1.4e+02 Score=24.78 Aligned_cols=26 Identities=12% Similarity=0.209 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 13 QSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
--++..+.+++..|.+||++|+.+..
T Consensus 22 ~~k~~ka~~~~~kL~~en~qlk~Ek~ 47 (87)
T PF10883_consen 22 WWKVKKAKKQNAKLQKENEQLKTEKA 47 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888877654
No 132
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=20.54 E-value=1.3e+02 Score=33.45 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=28.1
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+.+..+..+.+..+.||++||..+++|+.++..
T Consensus 36 eev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~ 68 (617)
T PF15070_consen 36 EEVRTLKEEKEHDISRVQELERSLSELKNQMAE 68 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345688888999999999999999999988764
No 133
>PF09153 DUF1938: Domain of unknown function (DUF1938); InterPro: IPR015236 This domain, which is predominantly found in the archaeal protein O6-alkylguanine-DNA alkyltransferase, adopts a secondary structure consisting of a three stranded antiparallel beta-sheet and three alpha helices. The exact function has not, as yet, been defined, though it has been postulated that this domain may confer thermostability to the protein []. ; GO: 0005737 cytoplasm; PDB: 1MGT_A.
Probab=20.46 E-value=1.1e+02 Score=25.29 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=23.7
Q ss_pred CCcEEEEEEEeccchhHhHHHHHHHHHHH
Q 015260 285 GNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313 (410)
Q Consensus 285 ~~~~~~~~I~G~sFL~hQVR~MVg~Ll~V 313 (410)
.-+=+.|.+-|.-||.++|+.+++.|-.=
T Consensus 23 kIqGItfslDg~efl~eri~~L~~~L~kR 51 (86)
T PF09153_consen 23 KIQGITFSLDGEEFLRERISRLIEFLKKR 51 (86)
T ss_dssp SEEEEEEESSHHHHHH-HHHHHHHHHHHT
T ss_pred ceeeEEEEeccHHHHHHHHHHHHHHHHhc
Confidence 34568899999999999999999998653
No 134
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=20.31 E-value=1.7e+02 Score=24.00 Aligned_cols=29 Identities=28% Similarity=0.578 Sum_probs=24.4
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
+.++..++++|..++.+|+.+++.+.+.+
T Consensus 2 ~~~l~~~~~~L~~~~~~l~~~i~~~~~~l 30 (83)
T PF07061_consen 2 IESLEAEIQELKEQIEQLEKEISELEAEL 30 (83)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35778889999999999999999988864
No 135
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.14 E-value=2.3e+02 Score=23.91 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=27.1
Q ss_pred hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 5 KQELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 5 ~~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
..|.+..+...++.+-.+++.||.....|..++.+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777888888888888888888888877765
Done!