Query 015260
Match_columns 410
No_of_seqs 229 out of 1367
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dj0_A Pseudouridine synthase 100.0 5.7E-74 2E-78 556.8 26.0 234 90-359 2-251 (264)
2 1vs3_A TRNA pseudouridine synt 100.0 1.8E-74 6.1E-79 556.1 21.5 232 91-355 1-248 (249)
3 1kd8_A GABH AIV, GCN4 acid bas 94.8 0.046 1.6E-06 36.6 4.6 31 10-40 4-34 (36)
4 1kd8_B GABH BLL, GCN4 acid bas 94.2 0.074 2.5E-06 35.6 4.5 32 9-40 3-34 (36)
5 3m48_A General control protein 93.1 0.11 3.8E-06 34.2 3.9 29 10-38 3-31 (33)
6 1uo4_A General control protein 92.0 0.22 7.6E-06 32.9 4.3 29 10-38 4-32 (34)
7 2oxj_A Hybrid alpha/beta pepti 91.6 0.25 8.6E-06 32.6 4.2 30 9-38 3-32 (34)
8 3c3f_A Alpha/beta peptide with 91.5 0.28 9.6E-06 32.4 4.3 30 9-38 3-32 (34)
9 2wq1_A General control protein 90.9 0.38 1.3E-05 31.6 4.4 29 10-38 3-31 (33)
10 3c3g_A Alpha/beta peptide with 90.4 0.44 1.5E-05 31.3 4.4 29 10-38 3-31 (33)
11 2yy0_A C-MYC-binding protein; 87.0 0.84 2.9E-05 33.3 4.5 34 5-38 17-50 (53)
12 2bni_A General control protein 86.7 0.96 3.3E-05 29.9 4.1 29 10-38 4-32 (34)
13 1gk7_A Vimentin; intermediate 86.2 1.3 4.5E-05 30.3 4.9 33 6-38 5-37 (39)
14 2hy6_A General control protein 86.1 1.2 4.2E-05 29.4 4.4 29 10-38 4-32 (34)
15 2v9k_A Uncharacterized protein 83.6 7.7 0.00026 40.6 11.6 156 116-300 317-486 (530)
16 1dip_A Delta-sleep-inducing pe 82.9 2.3 7.7E-05 33.1 5.4 33 7-39 15-47 (78)
17 2r2v_A GCN4 leucine zipper; co 81.4 2.5 8.6E-05 27.9 4.4 29 10-38 4-32 (34)
18 3nmd_A CGMP dependent protein 77.2 4.3 0.00015 31.4 5.4 36 7-42 33-68 (72)
19 1zme_C Proline utilization tra 76.1 2.6 8.7E-05 31.2 3.9 26 13-38 43-68 (70)
20 1dh3_A Transcription factor CR 73.9 3.3 0.00011 30.2 3.8 26 14-39 22-47 (55)
21 1dip_A Delta-sleep-inducing pe 69.5 2.9 9.8E-05 32.5 2.7 32 5-36 6-37 (78)
22 2oa5_A Hypothetical protein BQ 67.5 2.7 9.1E-05 35.1 2.3 27 13-39 7-33 (110)
23 2pnv_A Small conductance calci 67.4 10 0.00034 26.5 4.9 34 6-39 8-41 (43)
24 1hjb_A Ccaat/enhancer binding 65.3 9 0.00031 30.6 4.9 31 9-39 45-75 (87)
25 1t2k_D Cyclic-AMP-dependent tr 65.1 10 0.00036 27.8 5.0 20 17-36 25-44 (61)
26 3s4r_A Vimentin; alpha-helix, 64.5 6.7 0.00023 31.6 4.1 33 7-39 9-41 (93)
27 2dgc_A Protein (GCN4); basic d 62.4 11 0.00036 28.2 4.6 23 16-38 32-54 (63)
28 1gu4_A CAAT/enhancer binding p 61.9 9.7 0.00033 29.8 4.4 27 11-37 47-73 (78)
29 2oqq_A Transcription factor HY 59.9 17 0.00059 25.1 4.8 26 12-37 15-40 (42)
30 1hjb_A Ccaat/enhancer binding 59.5 9.8 0.00033 30.4 4.2 26 14-39 36-61 (87)
31 1ci6_A Transcription factor AT 59.3 15 0.00052 27.3 5.0 24 15-38 24-47 (63)
32 1ci6_A Transcription factor AT 59.2 11 0.00037 28.1 4.2 28 11-38 34-61 (63)
33 1nkp_B MAX protein, MYC proto- 58.6 14 0.00048 28.6 5.0 33 7-39 47-79 (83)
34 2oqq_A Transcription factor HY 58.2 11 0.00039 26.0 3.7 24 16-39 5-28 (42)
35 1gu4_A CAAT/enhancer binding p 57.4 11 0.00039 29.4 4.2 26 14-39 36-61 (78)
36 1go4_E MAD1 (mitotic arrest de 52.7 14 0.00046 30.4 4.0 25 14-38 12-36 (100)
37 2jee_A YIIU; FTSZ, septum, coi 52.4 22 0.00074 28.1 5.0 17 7-23 20-36 (81)
38 1jnm_A Proto-oncogene C-JUN; B 52.0 11 0.00037 27.9 3.1 25 15-39 23-47 (62)
39 2dgc_A Protein (GCN4); basic d 50.7 18 0.00062 26.9 4.2 34 5-38 28-61 (63)
40 3trt_A Vimentin; cytoskeleton, 47.6 20 0.0007 27.2 4.2 29 6-34 48-76 (77)
41 2wt7_A Proto-oncogene protein 47.5 32 0.0011 25.3 5.1 22 16-37 25-46 (63)
42 3cvf_A Homer-3, homer protein 46.7 7.8 0.00027 30.5 1.6 28 12-39 4-31 (79)
43 1hwt_C Protein (heme activator 46.5 6.6 0.00023 29.7 1.2 22 13-34 57-78 (81)
44 3mq7_A Bone marrow stromal ant 44.3 30 0.001 29.1 4.8 19 20-38 70-88 (121)
45 3viq_B Mating-type switching p 44.0 22 0.00076 28.3 3.9 27 11-37 5-31 (85)
46 1uuj_A Platelet-activating fac 43.3 11 0.00036 30.3 1.9 25 14-38 58-82 (88)
47 3he4_B Synzip5; heterodimeric 42.8 20 0.00069 24.4 2.9 22 15-36 4-25 (46)
48 1g6u_A Domain swapped dimer; d 42.0 32 0.0011 23.6 3.8 25 15-39 21-45 (48)
49 3viq_B Mating-type switching p 40.9 23 0.00078 28.2 3.5 25 15-39 2-26 (85)
50 3mq7_A Bone marrow stromal ant 40.0 39 0.0013 28.4 4.9 32 6-37 70-101 (121)
51 1g6u_A Domain swapped dimer; d 39.7 41 0.0014 23.0 4.1 29 6-34 19-47 (48)
52 1a93_B MAX protein, coiled coi 39.6 46 0.0016 22.0 4.2 27 12-38 5-31 (34)
53 2w83_C C-JUN-amino-terminal ki 39.5 49 0.0017 25.7 5.1 36 7-42 23-58 (77)
54 1ic2_A Tropomyosin alpha chain 38.9 46 0.0016 25.7 5.0 29 11-39 38-66 (81)
55 1fmh_B General control protein 37.8 39 0.0013 21.5 3.5 24 15-38 2-25 (33)
56 2w83_C C-JUN-amino-terminal ki 37.2 15 0.00053 28.6 1.9 22 11-32 55-76 (77)
57 1fzc_B Fibrin; blood coagulati 37.0 38 0.0013 33.2 5.2 32 6-37 29-60 (328)
58 2yy0_A C-MYC-binding protein; 36.9 40 0.0014 24.2 4.0 28 12-39 17-44 (53)
59 2er8_A Regulatory protein Leu3 36.7 16 0.00055 26.9 2.0 20 14-33 49-68 (72)
60 3cve_A Homer protein homolog 1 36.2 24 0.00081 27.2 2.8 24 16-39 2-25 (72)
61 1nlw_A MAD protein, MAX dimeri 35.6 52 0.0018 25.5 4.8 32 7-38 47-78 (80)
62 2wuj_A Septum site-determining 35.3 33 0.0011 24.9 3.4 20 19-38 32-51 (57)
63 3ni0_A Bone marrow stromal ant 33.7 60 0.002 26.3 4.9 20 20-39 66-85 (99)
64 2akf_A Coronin-1A; coiled coil 33.5 65 0.0022 20.5 4.0 25 12-36 4-28 (32)
65 1am9_A Srebp-1A, protein (ster 33.2 39 0.0013 26.1 3.8 26 14-39 50-75 (82)
66 1lwu_B Fibrinogen beta chain; 33.1 30 0.001 33.9 3.7 30 7-36 28-57 (323)
67 1fmh_A General control protein 32.5 54 0.0018 20.8 3.5 23 16-38 3-25 (33)
68 1nkp_A C-MYC, MYC proto-oncoge 31.9 67 0.0023 25.2 5.0 33 7-39 52-84 (88)
69 2lw1_A ABC transporter ATP-bin 31.7 53 0.0018 25.7 4.3 29 11-39 19-47 (89)
70 1gd2_E Transcription factor PA 31.2 69 0.0024 24.4 4.7 33 7-39 29-61 (70)
71 1t2k_D Cyclic-AMP-dependent tr 31.1 87 0.003 22.7 5.2 28 10-37 32-59 (61)
72 4dzn_A Coiled-coil peptide CC- 30.8 91 0.0031 19.8 4.3 26 10-35 5-30 (33)
73 1jnm_A Proto-oncogene C-JUN; B 30.7 88 0.003 22.8 5.1 31 7-37 22-52 (62)
74 1jcd_A Major outer membrane li 30.0 82 0.0028 22.7 4.6 30 9-38 6-35 (52)
75 1dh3_A Transcription factor CR 29.6 76 0.0026 22.8 4.5 33 5-37 20-52 (55)
76 2zvf_A Alanyl-tRNA synthetase; 29.5 51 0.0017 28.3 4.3 29 11-39 29-57 (171)
77 3coq_A Regulatory protein GAL4 29.1 45 0.0016 25.3 3.5 23 13-35 44-66 (89)
78 3u1c_A Tropomyosin alpha-1 cha 28.9 77 0.0026 25.5 5.0 29 11-39 41-69 (101)
79 2akf_A Coronin-1A; coiled coil 28.4 81 0.0028 20.1 3.8 25 7-31 6-30 (32)
80 1hlo_A Protein (transcription 27.5 73 0.0025 24.3 4.4 23 14-36 57-79 (80)
81 3ljm_A Coil Ser L9C; de novo d 27.1 96 0.0033 19.4 3.9 23 11-33 5-27 (31)
82 3kqg_A Langerin, C-type lectin 27.1 80 0.0027 26.9 5.1 23 16-38 18-40 (182)
83 4dac_A Computationally designe 26.9 73 0.0025 19.5 3.3 22 16-37 3-24 (28)
84 2j5u_A MREC protein; bacterial 26.6 61 0.0021 30.4 4.5 29 11-39 30-61 (255)
85 2er8_A Regulatory protein Leu3 26.3 45 0.0015 24.4 2.9 20 20-39 48-67 (72)
86 2wt7_A Proto-oncogene protein 26.2 1.2E+02 0.004 22.2 5.2 28 11-38 34-61 (63)
87 2wg5_A General control protein 25.4 57 0.0019 26.6 3.6 26 11-36 11-36 (109)
88 1pyi_A Protein (pyrimidine pat 24.7 49 0.0017 25.6 3.0 22 13-34 47-68 (96)
89 2w6b_A RHO guanine nucleotide 24.6 70 0.0024 23.3 3.4 26 14-39 10-35 (56)
90 1x8y_A Lamin A/C; structural p 23.9 1.1E+02 0.0038 23.8 4.9 33 7-39 21-53 (86)
91 2l5g_B Putative uncharacterize 23.8 78 0.0027 21.8 3.4 17 12-28 21-37 (42)
92 3s9g_A Protein hexim1; cyclin 23.7 1.1E+02 0.0039 24.9 4.9 17 20-36 64-80 (104)
93 1lwu_C Fibrinogen gamma chain; 23.7 81 0.0028 30.8 4.9 30 7-36 26-55 (323)
94 1q08_A Zn(II)-responsive regul 23.4 1.2E+02 0.004 23.4 5.0 36 7-42 39-74 (99)
95 1deb_A APC protein, adenomatou 23.0 86 0.003 22.5 3.6 25 15-39 4-28 (54)
96 2xdj_A Uncharacterized protein 22.1 1.2E+02 0.0041 23.7 4.7 18 19-36 25-42 (83)
97 1wi9_A Protein C20ORF116 homol 22.0 54 0.0018 25.2 2.5 23 7-29 26-48 (72)
98 3he5_A Synzip1; heterodimeric 20.8 1.2E+02 0.004 20.8 3.8 19 17-35 6-24 (49)
99 3iyn_Q Protein IX, PIX, hexon- 20.3 1E+02 0.0035 26.1 4.1 28 11-38 102-129 (140)
100 1rtm_1 Mannose-binding protein 20.1 57 0.0019 27.0 2.6 22 18-39 1-22 (149)
101 1nlw_A MAD protein, MAX dimeri 20.1 88 0.003 24.1 3.5 26 13-38 46-71 (80)
No 1
>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} SCOP: d.265.1.1 PDB: 2nqp_A 2nr0_A 2nre_A
Probab=100.00 E-value=5.7e-74 Score=556.76 Aligned_cols=234 Identities=27% Similarity=0.421 Sum_probs=212.6
Q ss_pred ccceEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCcccc
Q 015260 90 FKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKEC 169 (410)
Q Consensus 90 ~kr~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~ 169 (410)
|+++|+|.|+|+||+|+|||+||+ .+|||++|++||.++. .+++.+++|||||+||||+|||+||++++.+
T Consensus 2 Pm~r~~l~i~YdGt~y~GwQ~Q~~-~~TVq~~Le~AL~~~~-----~~~v~~~~agRTDaGVHA~gqv~~f~~~~~~--- 72 (264)
T 1dj0_A 2 PVYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVA-----NEPITVFCAGRTDAGVHGTGQVVHFETTALR--- 72 (264)
T ss_dssp CCEEEEEEEEECCTTSSCSCCTTC-SSCHHHHHHHHHHHHH-----TSCCCEEESSCCCTTCEEEEEEEEEEESCCC---
T ss_pred CccEEEEEEEEeCCCceeEEECcC-CCCHHHHHHHHHHHHh-----CCCeEEEEeccCCCCCchhhEEEEEEECCCC---
Confidence 578999999999999999999998 5899999999999972 2478999999999999999999999997654
Q ss_pred CcCCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeC----------------C
Q 015260 170 NTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR----------------E 233 (410)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~----------------~ 233 (410)
++..|+..||+.||+||+|++|.+||++|||||+|++|+|+|+|+. .
T Consensus 73 -----------------~~~~~~~~lN~~LP~dI~V~~~~~V~~~FhARf~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~ 135 (264)
T 1dj0_A 73 -----------------KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYE 135 (264)
T ss_dssp -----------------CHHHHHHHHHHTSCTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCS
T ss_pred -----------------CHHHHHHHHHhhCCcCeEEEEEEeCCCCCCcccccccEEEEEEEccCCCCChhHcCceEeeCC
Confidence 2357899999999999999999999999999999999999999963 4
Q ss_pred CCCHHHHHHHHhhccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHH
Q 015260 234 NLNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMI 313 (410)
Q Consensus 234 ~LDie~M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~V 313 (410)
+||+++|++||+.|+|+|||+|||+.+. +.++++|+|.+++|.. .++++.|+|+|+||||||||+|||+|++|
T Consensus 136 ~lD~~~M~~aa~~l~G~HDF~~F~~~~~-~~~s~vR~I~~~~v~~------~~~~i~~~i~g~~FL~~mVR~mvG~L~~v 208 (264)
T 1dj0_A 136 PLDAERMHRAAQCLLGENDFTSFRAVQC-QSRTPWRNVMHINVTR------HGPYVVVDIKANAFVHHMVRNIVGSLMEV 208 (264)
T ss_dssp CCCHHHHHHHHGGGCEEEECGGGCCTTC-CCSCCEEEEEEEEEEE------ETTEEEEEEEESCCCTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCcccHHHhccCCC-CCCCcEEEEEEEEEEE------CCCEEEEEEEEchHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999998764 4578999999999975 24799999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeeeCCCCCCCcc
Q 015260 314 GQGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDGLKFT 359 (410)
Q Consensus 314 G~G~~~~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv~Y~~~~~~ 359 (410)
|+|.+++++|+++|+.++ +....++|||+||+|++|.|+ .+|.
T Consensus 209 G~G~~~~~~i~~~L~~~~--r~~~~~~APa~GL~L~~V~Y~-~~~~ 251 (264)
T 1dj0_A 209 GAHNQPESWIAELLAAKD--RTLAAATAKAEGLYLVAVDYP-DRYD 251 (264)
T ss_dssp HTTSSCTTHHHHHHHHCC--GGGSCCCCCSTTEEEEEEECC-GGGC
T ss_pred HCCCCCHHHHHHHHhCCC--cccCcCccCCCCcEEeeeccC-chhc
Confidence 999999999999999864 566889999999999999995 3443
No 2
>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural NPPSFA, national project on protein structural and function analyses; 2.25A {Thermus thermophilus}
Probab=100.00 E-value=1.8e-74 Score=556.12 Aligned_cols=232 Identities=28% Similarity=0.397 Sum_probs=209.3
Q ss_pred cceEEEEEEEeCCCceeeeecCCCCCcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCCEEEEEEcCCccccC
Q 015260 91 KRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECN 170 (410)
Q Consensus 91 kr~vaL~iaY~Gt~Y~G~q~Q~~~~~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~QVis~~~~s~~~~~~ 170 (410)
+++|+|.|+|+||+|+|||+||+..+|||++|++||.++ .+++.+++|||||+||||+|||+||++++.++.
T Consensus 1 M~r~~l~i~YdGt~y~GwQ~Q~~~~~TVq~~Le~AL~~~------~~~v~~~~agRTDaGVHA~gqv~~f~~~~~~~~-- 72 (249)
T 1vs3_A 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI------GALPKAVAAGRTDAGVHALAMPFHVDVESAIPV-- 72 (249)
T ss_dssp CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGG------TBCSCCEESSCCBTTCEEEEEEEEEEECSCCCG--
T ss_pred CcEEEEEEEEECCCceeEeECCCCCCCHHHHHHHHHHHc------CCcceEEEeccCcCCcCccccEEEEEECCCCCH--
Confidence 468999999999999999999984389999999999995 257899999999999999999999999875422
Q ss_pred cCCCCCCccccccccccHHHHHHHHhccCCCCeEEEEeEecCCCCCcCCCCCCceeEEEeeC----------------CC
Q 015260 171 TNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVIGWSPAPTDFSARFSCISREYKYFFWR----------------EN 234 (410)
Q Consensus 171 ~~~~~~~~~~~~~~~~~e~~~~~~LN~~LP~dIrV~~~~~V~~~F~ARf~c~~R~Y~Y~~~~----------------~~ 234 (410)
..|+..||+.||+||+|++|.+||++|||||+|++|+|+|+|+. .+
T Consensus 73 ------------------~~~~~~lN~~LP~dI~V~~~~~v~~~FhARf~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ 134 (249)
T 1vs3_A 73 ------------------EKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRP 134 (249)
T ss_dssp ------------------GGHHHHHHHHSCTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCTTTTTTSEEECSC
T ss_pred ------------------HHHHHHHHhcCCcCEEEEEEEECCCCCCcccccccEEEEEEEccCCCCChhhCCeeEEeCCC
Confidence 36889999999999999999999999999999999999999962 47
Q ss_pred CCHHHHHHHHhhccceecceeeeecCCCCcccceEEEEEEEEeeccccccCCcEEEEEEEeccchhHhHHHHHHHHHHHh
Q 015260 235 LNLSAMESAGKKFVGEHDFRNFCKMDAANVHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLWHQVRCMVAVLFMIG 314 (410)
Q Consensus 235 LDie~M~~Aak~fvGtHDF~NF~k~~~~~~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~hQVR~MVg~Ll~VG 314 (410)
||+++|++||+.|+|+|||+|||+.+. ++++|+|.+++|.+... ..++++.|+|+|+||||||||+|||+|++||
T Consensus 135 ldi~~m~~aa~~l~G~HDF~~F~~~~~---~~~vR~I~~~~v~~~~~--~~~~~i~~~i~g~~FL~~mVR~mvG~l~~vg 209 (249)
T 1vs3_A 135 LDLEAMEEALSLLLGRHNFLGFAKEET---RPGERELLEARLQVAEG--EAGLEVRLYFRGKSFLRGQVRGMVGTLLEVG 209 (249)
T ss_dssp CCHHHHHHHHHHHSEEEEGGGGCSSCC---SCCEEEEEEEEEEEEEC--SSSEEEEEEEEESCCCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCceeHHheecCCC---CCCCcEEEEEEEEeccc--cCCCEEEEEEEEChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999765 68999999999974211 2357999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHhcCCCCCCCCccCCCCCCeeeeeCCCCC
Q 015260 315 QGLESIDVIESLLDTNGIPRKPQYNMAPEIPLVLQSCDFDG 355 (410)
Q Consensus 315 ~G~~~~~~i~~lL~~~~~~rk~~~~~AP~~gL~L~dv~Y~~ 355 (410)
+|.+++++|+++|+..+ |...+++|||+||+|++|.|++
T Consensus 210 ~g~~~~~~i~~~L~~~~--r~~~~~~APa~GL~L~~v~Y~~ 248 (249)
T 1vs3_A 210 LGKRPPESLKAILKTAD--RRLAGPTAPAHGLYFVEAAYPE 248 (249)
T ss_dssp HSSSCGGGHHHHHHHCC--GGGSCCCCCGGGEEEEEEECCC
T ss_pred CCCCCHHHHHHHHhCCC--cccCcCccCCCCcEEeeeeCCC
Confidence 99999999999999864 5567899999999999999963
No 3
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=94.79 E-value=0.046 Score=36.59 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=28.3
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLSLC 40 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~~~ 40 (410)
+.++..+|.|+.+..+||.|+++|++.+..|
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 5678899999999999999999999998875
No 4
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=94.15 E-value=0.074 Score=35.60 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=28.9
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSLC 40 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~~ 40 (410)
.+.++..+|.|+.+-.+||.|+++|++.+..|
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 45688899999999999999999999998875
No 5
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=93.08 E-value=0.11 Score=34.19 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=26.1
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.++..+|.|+.+-.+||.|+++|++.+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 35788999999999999999999999875
No 6
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=92.01 E-value=0.22 Score=32.93 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=26.1
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.++..+|.|+.+-.+||.|+++|++.+.
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 45788899999999999999999999875
No 7
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=91.59 E-value=0.25 Score=32.63 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=27.0
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+.++..+|.|+.+=++||.|+.+|++.+.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 457888999999999999999999999875
No 8
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=91.53 E-value=0.28 Score=32.37 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=26.6
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+.++..+|.|+.+-.+||.|+++|++.+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 356788999999999999999999998764
No 9
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=90.89 E-value=0.38 Score=31.61 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=25.7
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.++..+|.|+.+..+||.|+++|++.+-
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45788899999999999999999998754
No 10
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=90.40 E-value=0.44 Score=31.28 Aligned_cols=29 Identities=14% Similarity=0.301 Sum_probs=25.8
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.++..+|.|+.+-.+||.|+++|++.+.
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 45788899999999999999999998764
No 11
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=87.02 E-value=0.84 Score=33.28 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=28.8
Q ss_pred hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 5 KQELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 5 ~~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+.-+.+++.+.+.|..|+.+|.++++.|++++.
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455668999999999999999999999998875
No 12
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=86.66 E-value=0.96 Score=29.91 Aligned_cols=29 Identities=14% Similarity=0.281 Sum_probs=25.3
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.++..+|.|+.+=.+||.|+++|++.+.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 46788899999999999999999998764
No 13
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=86.20 E-value=1.3 Score=30.27 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=28.6
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 6 QELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
-|++.++-.-.+.-+.||..||++|..|..++.
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888889999999999999999998865
No 14
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=86.13 E-value=1.2 Score=29.39 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.5
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.++..+|.|+.+=.+||.|+++|++.+-
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45778899999999999999999998764
No 15
>2v9k_A Uncharacterized protein FLJ32312; pseudouridine synthase, PUS10, RNA modification, thump domai; HET: EPE; 2.0A {Homo sapiens}
Probab=83.56 E-value=7.7 Score=40.65 Aligned_cols=156 Identities=13% Similarity=0.185 Sum_probs=97.1
Q ss_pred CcHHHHHHHHHHHhhhhhcCCceeeeeeeccCCccccccCC----EEEEEEcCCccccCcCCCCCCccccccccccHHHH
Q 015260 116 PTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQ----VIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDY 191 (410)
Q Consensus 116 ~TVE~~L~~AL~k~~li~~~~~~~~~~r~gRTDkGVhA~~Q----Vis~~~~s~~~~~~~~~~~~~~~~~~~~~~~e~~~ 191 (410)
.+||+.|-..+.+. .+ ...+.+++|||-|.-|--+|. |+-+.-+.... ++. .....+
T Consensus 317 ~SVee~I~~~i~~~---f~-~~~~~Fh~sGREDvDVRmLG~GRPFvlEi~~P~r~~------------~~~---~dl~~l 377 (530)
T 2v9k_A 317 SSVEELISDHLLAV---FK-AESFNFSSSGREDVDVRTLGNGRPFAIELVNPHRVH------------FTS---QEIKEL 377 (530)
T ss_dssp CCHHHHHHTTHHHH---HT-CSEEEEEESSCCCTTCEEEEEEEEEEEEEESCSCCC------------CCH---HHHHHH
T ss_pred CCHHHHHHHHHHHh---cC-CCeEEEeecCCCCCceeecCCCCcEEEEecCccccc------------cch---hHHHHH
Confidence 59999998888775 32 467899999999999999998 44442111100 000 112335
Q ss_pred HHHHhccCCCCeEEEEeEecCCCCCcCCC----CCCceeEEEee-CCCCCHHHHHHHHhhccceecceeeeecC--CCC-
Q 015260 192 VRVLNRVLPKDIRVIGWSPAPTDFSARFS----CISREYKYFFW-RENLNLSAMESAGKKFVGEHDFRNFCKMD--AAN- 263 (410)
Q Consensus 192 ~~~LN~~LP~dIrV~~~~~V~~~F~ARf~----c~~R~Y~Y~~~-~~~LDie~M~~Aak~fvGtHDF~NF~k~~--~~~- 263 (410)
...+|.. -..|.|.....|+..=-.+.- -..++|+=+++ ..+++-+.++.+.. |.|--- +-+.. ...
T Consensus 378 e~~IN~~-~~~V~V~~L~~v~~~~~~~ik~ge~~~~K~Y~alv~~~~~v~~e~l~~~~~-l~~l~I---~QrtP~RV~hR 452 (530)
T 2v9k_A 378 QQKINNS-SNKIQVRDLQLVTREAIGHMKEGEEEKTKTYSALIWTNKAIQKKDIEFLND-IKDLKI---DQKTPLRVLHR 452 (530)
T ss_dssp HHHHHTT-CSSEEEEEEEEECTHHHHHHHHHHHHCCEEEEEEEEESSCCCHHHHGGGGG-CCSEEE---EEECCGGGTTT
T ss_pred HHHHhcc-CCcEEEEeeEEEcHHHHHHHhcccccCCeEEEEEEEEcCCCCHHHHHHHHh-cCCcee---eccCCeEEEEe
Confidence 5678973 355999999888632111111 23488887765 46788778777765 665222 22211 111
Q ss_pred --cccceEEEEEEEEeeccccccCCcEEEEEEEeccchh
Q 015260 264 --VHNYKRHVTSFEISPCYISFEGNQLCAIKIRGSAFLW 300 (410)
Q Consensus 264 --~~~~~R~I~s~~I~~~~~~~~~~~~~~~~I~G~sFL~ 300 (410)
...-.|+|+++++... +..++.+.|..++=+|
T Consensus 453 R~~~~R~R~I~~i~~~~~-----~~~~~~l~i~~eaGtY 486 (530)
T 2v9k_A 453 RPLAVRARVIHFMETQYV-----DEHHFRLHLKTQAGTY 486 (530)
T ss_dssp SCCCEEEEEEEEEEEEEE-----ETTEEEEEEEECTTCC
T ss_pred cCCCccceEEEEEEEEEe-----cCCEEEEEEEecCCCE
Confidence 1124689999998763 2468999999888666
No 16
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=82.89 E-value=2.3 Score=33.06 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=25.7
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
|-+..|+.++..|..|+.+||.||.-|+.-.+.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~asp 47 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLASP 47 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 344578888888888888889999888876553
No 17
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=81.41 E-value=2.5 Score=27.93 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=25.3
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.++..+|.|+.+-.+||.|+++|++.+-
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 45778899999999999999999998764
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.25 E-value=4.3 Score=31.41 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=27.8
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRC 42 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~~~~ 42 (410)
|.+......++.|..+++|.|++++.|++++.++++
T Consensus 33 eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 33 EELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334556667888888999999999999998877544
No 19
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=76.15 E-value=2.6 Score=31.21 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 13 QSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+..++.|..||.+||..+++|.+.++
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34588999999999999999988765
No 20
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=73.85 E-value=3.3 Score=30.23 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.-++.|..+|.+||.||..|..+++.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999999999999999998775
No 21
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=69.45 E-value=2.9 Score=32.47 Aligned_cols=32 Identities=25% Similarity=0.504 Sum_probs=26.8
Q ss_pred hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 5 KQELISSLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 5 ~~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
+-.+.-+-+.++|.|..+|+||+..|.+|...
T Consensus 6 KtHLm~AVREEVevLKe~I~EL~e~~~qLE~E 37 (78)
T 1dip_A 6 KNHLMYAVREEVEILKEQIRELVEKNSQLERE 37 (78)
T ss_dssp TTGGGGTCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567889999999999999999999875
No 22
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=67.52 E-value=2.7 Score=35.06 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 13 QSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
....|+|..+++.|+-||..|++++.+
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456899999999999999999999863
No 23
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=67.43 E-value=10 Score=26.47 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=29.5
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 6 QELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
-++++.+.+..+.|-.||-.||.++..|...++.
T Consensus 8 ydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 8 YDMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3678889999999999999999999999887763
No 24
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=65.34 E-value=9 Score=30.60 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=20.9
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+..|+.+-+.|..+|.+|+.|+..|+..+.+
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777777776664
No 25
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=65.08 E-value=10 Score=27.80 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 015260 17 EALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 17 ~~l~~r~~~le~~~~~~~~~ 36 (410)
+.|..+|.+|+.+|..|.++
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~ 44 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 26
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=64.48 E-value=6.7 Score=31.56 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
|++..|-...+..+.||..||++|+.|..++..
T Consensus 9 e~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~ 41 (93)
T 3s4r_A 9 VELQELNDRFANLIDKVRFLEQQNKILLAELEQ 41 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788889999999999999999999888765
No 27
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=62.44 E-value=11 Score=28.22 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 015260 16 LEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 16 ~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
++.|..+|.+|+.+|..|.+++.
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555443
No 28
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.91 E-value=9.7 Score=29.79 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=12.7
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
.|+.+-+.|..+|.+|+.|+..|+..+
T Consensus 47 ~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 47 ELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555444443
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=59.94 E-value=17 Score=25.07 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=12.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
++....+|-.||--|+.||+-|++.+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 33444444455555555555554443
No 30
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=59.49 E-value=9.8 Score=30.40 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.....+..|+.+||+||++|+.++..
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778999999999988887764
No 31
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.26 E-value=15 Score=27.27 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 15 QLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
..+.|..++++|+.+|..|+.+++
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443
No 32
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.19 E-value=11 Score=28.08 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=18.4
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.++.+-..|..+|..|+.|++.|++.+.
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666667777777777777766543
No 33
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=58.64 E-value=14 Score=28.60 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=24.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+-|..++.+.+.|...+.+|+.+++.|..+++.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777778888888888888888877764
No 34
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=58.22 E-value=11 Score=25.97 Aligned_cols=24 Identities=50% Similarity=0.703 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 16 LEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 16 ~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+..|-.|+++||..|+.|.+++|.
T Consensus 5 l~eLE~r~k~le~~naeLEervst 28 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLST 28 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888877777764
No 35
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=57.41 E-value=11 Score=29.37 Aligned_cols=26 Identities=31% Similarity=0.336 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.....+..|+.+||+||.+|+.++..
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~ 61 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQ 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788999999999999888764
No 36
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=52.74 E-value=14 Score=30.36 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.++..|+.+|.+||.|+.+|.++..
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888888888888888877755
No 37
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=52.43 E-value=22 Score=28.07 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=8.4
Q ss_pred HHHHHhHhHHHHHHHHH
Q 015260 7 ELISSLQSQLEALQNRV 23 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~ 23 (410)
+||.-++.+++.|..+-
T Consensus 20 dtI~lLqmEieELKekN 36 (81)
T 2jee_A 20 DTITLLQMEIEELKEKN 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555554443
No 38
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=52.01 E-value=11 Score=27.86 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 15 QLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.++.|..+|.+|+.+|..|..+++.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666554
No 39
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.69 E-value=18 Score=26.92 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=27.7
Q ss_pred hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 5 KQELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 5 ~~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.+-+..|+.+++.|...-.+|+.++.+|+.++.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778899999999999999999999988764
No 40
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=47.60 E-value=20 Score=27.16 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=21.7
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 015260 6 QELISSLQSQLEALQNRVKELEADNAKLL 34 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r~~~le~~~~~~~ 34 (410)
.+.+...+.++..|+..|+.|+.|++-|+
T Consensus 48 ~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 48 NDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555667788888888888888887665
No 41
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=47.52 E-value=32 Score=25.34 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 015260 16 LEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 16 ~~~l~~r~~~le~~~~~~~~~~ 37 (410)
++.|..+|.+|+.+|..|..++
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544444
No 42
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=46.70 E-value=7.8 Score=30.48 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=15.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+.++-+.+..|+|++|.+|+.|..+++.
T Consensus 4 l~~e~e~~~~klq~~E~rN~~Le~~v~~ 31 (79)
T 3cvf_A 4 MAAEREETQQKVQDLETRNAELEHQLRA 31 (79)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4455666777777777777777666643
No 43
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=46.51 E-value=6.6 Score=29.75 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 015260 13 QSQLEALQNRVKELEADNAKLL 34 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~ 34 (410)
...++.|..||++||..+++|.
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3678888888888888877764
No 44
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=44.30 E-value=30 Score=29.08 Aligned_cols=19 Identities=42% Similarity=0.550 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 015260 20 QNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 20 ~~r~~~le~~~~~~~~~~~ 38 (410)
..+|+||+.|+..|..+|.
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3346666666666665554
No 45
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=43.95 E-value=22 Score=28.25 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=14.3
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
+++..+++|...+.+|+++++++.+++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555555555444
No 46
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=43.27 E-value=11 Score=30.31 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.+-.|.+||-+||.++..|++.+.
T Consensus 58 TSViRLQKKImdLE~~~~~l~~el~ 82 (88)
T 1uuj_A 58 TSVIRLQKKVMELESKLNEAKEEFT 82 (88)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466789999999999999977755
No 47
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=42.76 E-value=20 Score=24.36 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 015260 15 QLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~ 36 (410)
-+..|.+-|||||+.|+.|+..
T Consensus 4 tvkelknyiqeleernaelknl 25 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNL 25 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhH
Confidence 4567888999999988877653
No 48
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=41.98 E-value=32 Score=23.58 Aligned_cols=25 Identities=40% Similarity=0.473 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 15 QLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
++.+|...+|.||..++-|++.++.
T Consensus 21 elaaleselqalekklaalksklqa 45 (48)
T 1g6u_A 21 ELAALESELQALEKKLAALKSKLQA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777777653
No 49
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=40.85 E-value=23 Score=28.18 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 15 QLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+.+.|..||++|+++.++|.++++.
T Consensus 2 ~~~~L~~~i~~L~~q~~~L~~ei~~ 26 (85)
T 3viq_B 2 EKSQLESRVHLLEQQKEQLESSLQD 26 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998775
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=39.99 E-value=39 Score=28.41 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=26.3
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 6 QELISSLQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
++.+-.++.+++.|-+.+++.++|+++|+..-
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566788889999999999999999998764
No 51
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=39.73 E-value=41 Score=23.03 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=18.7
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 015260 6 QELISSLQSQLEALQNRVKELEADNAKLL 34 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r~~~le~~~~~~~ 34 (410)
||...++++++.+|..++-.|...++-|+
T Consensus 19 peelaaleselqalekklaalksklqalk 47 (48)
T 1g6u_A 19 PEELAALESELQALEKKLAALKSKLQALK 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555667777777777766666666553
No 52
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=39.58 E-value=46 Score=21.97 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=22.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
++....+..+-|.+|+++|..|..|+.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 456677788889999999999988865
No 53
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=39.46 E-value=49 Score=25.73 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=29.1
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRC 42 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~~~~ 42 (410)
+|-+++.--...|+.||.||=.|..-|+..+.+|+.
T Consensus 23 ~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 23 ETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445566677788999999999999999998887653
No 54
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=38.93 E-value=46 Score=25.67 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=24.2
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
....++.+|.+|++.||.++.+...++..
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999988887764
No 55
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=37.84 E-value=39 Score=21.46 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 15 QLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
++.+|..|||.|.+.|--.++.++
T Consensus 2 evqalkkrvqalkarnyaakqkvq 25 (33)
T 1fmh_B 2 EVQALKKRVQALKARNYAAKQKVQ 25 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHH
Confidence 567899999999998876665544
No 56
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=37.23 E-value=15 Score=28.57 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=6.4
Q ss_pred HhHhHHHHHHHHHHHHHHHHHH
Q 015260 11 SLQSQLEALQNRVKELEADNAK 32 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~ 32 (410)
+.+.....+..||+|||.|+.+
T Consensus 55 s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 55 AVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444555556666655544
No 57
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=37.04 E-value=38 Score=33.20 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=25.8
Q ss_pred hHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 6 QELISSLQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 6 ~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
+..+..|+..++.|..+|++||.+++++...+
T Consensus 29 ~~~I~~Lq~~le~l~~KIq~Le~~v~~~~~~~ 60 (328)
T 1fzc_B 29 PTNLRVLRSILENLRSKIQKLESDVSAQMEYC 60 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44567788899999999999999998776653
No 58
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.86 E-value=40 Score=24.23 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=23.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
...++|+|++-+.+|.+++..|.++++.
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999888764
No 59
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=36.68 E-value=16 Score=26.94 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 015260 14 SQLEALQNRVKELEADNAKL 33 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~ 33 (410)
..++.|.+||.+||..++.|
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555444433
No 60
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=36.22 E-value=24 Score=27.24 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 16 LEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 16 ~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
++.+..|+|++|.+|+.|..+++.
T Consensus 2 ~~~~~~kLq~~E~~N~~Le~~v~~ 25 (72)
T 3cve_A 2 SHNSHMKLQEVEIRNKDLEGQLSE 25 (72)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHH
No 61
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=35.62 E-value=52 Score=25.46 Aligned_cols=32 Identities=16% Similarity=0.242 Sum_probs=19.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+.|..++.+...|...+.+|..++..|+.+|+
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666666666666554
No 62
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=35.29 E-value=33 Score=24.88 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 015260 19 LQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 19 l~~r~~~le~~~~~~~~~~~ 38 (410)
+..-+.+|.+||..|+.+++
T Consensus 32 v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555544443
No 63
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=33.68 E-value=60 Score=26.30 Aligned_cols=20 Identities=45% Similarity=0.537 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 015260 20 QNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 20 ~~r~~~le~~~~~~~~~~~~ 39 (410)
..||+||+.|+..|...|..
T Consensus 66 q~~v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998875
No 64
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=33.54 E-value=65 Score=20.54 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=13.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 12 LQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
++.++-.|..-||+|.+.+.+|...
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555443
No 65
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=33.16 E-value=39 Score=26.15 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.-+..|...+++|+++++.|+..+++
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788888888888888887664
No 66
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=33.10 E-value=30 Score=33.88 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=21.4
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
..+..|+..++.|..+|++||.++.++...
T Consensus 28 ~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~ 57 (323)
T 1lwu_B 28 GSLRSMKSVLEHLRAKMQRMEEAIKTQKEL 57 (323)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777778888888888777766554
No 67
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=32.45 E-value=54 Score=20.82 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 015260 16 LEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 16 ~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+++|.+.|-+-|+||-+|.+.+.
T Consensus 3 vaqlekevaqaeaenyqleqeva 25 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVA 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 45566666666666666665543
No 68
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=31.94 E-value=67 Score=25.23 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=22.2
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+-|..|+.+...|..-+.+|..++++|+.+++.
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666667777777777777653
No 69
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.66 E-value=53 Score=25.68 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=24.7
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.++.+++.|-.+|.+||++++.|..+++.
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45678899999999999999999988874
No 70
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=31.23 E-value=69 Score=24.36 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=20.0
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+-+..|+.+++.|......|..||..|+.++..
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~ 61 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQ 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666667666554
No 71
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.05 E-value=87 Score=22.65 Aligned_cols=28 Identities=32% Similarity=0.272 Sum_probs=17.5
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
..++.+-..|...|..|+.|+..|+..+
T Consensus 32 ~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 32 EDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455556666666666666666666654
No 72
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=30.85 E-value=91 Score=19.77 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=14.9
Q ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHh
Q 015260 10 SSLQSQLEALQNRVKELEADNAKLLS 35 (410)
Q Consensus 10 ~~~~~~~~~l~~r~~~le~~~~~~~~ 35 (410)
.++..++.+|...|-.|.=|.+-|++
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35555666666666666656555543
No 73
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.73 E-value=88 Score=22.76 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=16.3
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
+-+..++..++.|...-.+|..++..|..++
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555543
No 74
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=29.97 E-value=82 Score=22.66 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=21.3
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 9 ISSLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 9 ~~~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+..|.+++..|-.+|.+|..++.-|++.+.
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777777776654
No 75
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=29.63 E-value=76 Score=22.78 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=23.1
Q ss_pred hhHHHHHhHhHHHHHHHHHHHHHHHHHHHHhhh
Q 015260 5 KQELISSLQSQLEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 5 ~~~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~ 37 (410)
+.+-+..|+.+++.|...-.+|..++..|...+
T Consensus 20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777777777777777777777777653
No 76
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=29.52 E-value=51 Score=28.35 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=23.1
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.+...++.|..++++||+++++|+.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566888888899999999988888764
No 77
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=29.15 E-value=45 Score=25.27 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHh
Q 015260 13 QSQLEALQNRVKELEADNAKLLS 35 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~~ 35 (410)
+..++.|..||.+||..+++|..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 45678899999999988887743
No 78
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.94 E-value=77 Score=25.49 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=23.5
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
....++.+|..|++.||.++.++..++..
T Consensus 41 ~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 41 QLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888899999999998888877764
No 79
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=28.39 E-value=81 Score=20.11 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=18.8
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHH
Q 015260 7 ELISSLQSQLEALQNRVKELEADNA 31 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~ 31 (410)
|....+..-+..|..||..||.-++
T Consensus 6 e~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 6 EDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777778888888888887765
No 80
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=27.48 E-value=73 Score=24.29 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
.-+..|..++++|++++++|+.+
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33556666777777777766553
No 81
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=27.15 E-value=96 Score=19.41 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=12.9
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHH
Q 015260 11 SLQSQLEALQNRVKELEADNAKL 33 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~ 33 (410)
+++..-++|..++|.||..++-|
T Consensus 5 alekkcaalesklqalekkleal 27 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666665544
No 82
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=27.12 E-value=80 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 015260 16 LEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 16 ~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
+..|..+|++|+.++.++...++
T Consensus 18 ~~~l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 18 ASALNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544443
No 83
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=26.91 E-value=73 Score=19.52 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 015260 16 LEALQNRVKELEADNAKLLSKL 37 (410)
Q Consensus 16 ~~~l~~r~~~le~~~~~~~~~~ 37 (410)
+-.|-.-|+.||+|+-+|...+
T Consensus 3 vykldanvkrlekevgklegev 24 (28)
T 4dac_A 3 VYKLDANVKRLEKEVGKLEGEV 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeeccccHHHHHHHHhhhhhhh
Confidence 3456677888888888886653
No 84
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=26.56 E-value=61 Score=30.35 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=19.7
Q ss_pred HhHhHHH---HHHHHHHHHHHHHHHHHhhhhh
Q 015260 11 SLQSQLE---ALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 11 ~~~~~~~---~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.|+.+.+ ....+.++|++||++|++.|..
T Consensus 30 ~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 30 HLKERLEELAQLESEVADLKKENKDLKESLDI 61 (255)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444 4456777888899999888663
No 85
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=26.26 E-value=45 Score=24.40 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 015260 20 QNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 20 ~~r~~~le~~~~~~~~~~~~ 39 (410)
..+|++||++++.|.+.|+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998874
No 86
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.22 E-value=1.2e+02 Score=22.19 Aligned_cols=28 Identities=29% Similarity=0.343 Sum_probs=17.1
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+..+-+.|...|..|+.|+++|+..+.
T Consensus 34 ~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 34 QLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666667777766666543
No 87
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=25.44 E-value=57 Score=26.64 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=20.9
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
.++.+...|.+++++|++|+++|++.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46777888888888888888888765
No 88
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=24.68 E-value=49 Score=25.56 Aligned_cols=22 Identities=14% Similarity=0.008 Sum_probs=16.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 015260 13 QSQLEALQNRVKELEADNAKLL 34 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~ 34 (410)
+..++.|..||.+||..++++.
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~ 68 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYG 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 4567778888888887777653
No 89
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.59 E-value=70 Score=23.31 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 14 SQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 14 ~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.-+=+|.+.|++|.+|+.+|++-+..
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999886653
No 90
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=23.88 E-value=1.1e+02 Score=23.80 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=25.8
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
|+......+++.+...|-+||+++++++..+..
T Consensus 21 e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 21 DLEDSLARERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777888888999999999998887653
No 91
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.78 E-value=78 Score=21.83 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=8.5
Q ss_pred hHhHHHHHHHHHHHHHH
Q 015260 12 LQSQLEALQNRVKELEA 28 (410)
Q Consensus 12 ~~~~~~~l~~r~~~le~ 28 (410)
-+.++..|..|.++||+
T Consensus 21 te~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 21 VEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555554
No 92
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.69 E-value=1.1e+02 Score=24.86 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 015260 20 QNRVKELEADNAKLLSK 36 (410)
Q Consensus 20 ~~r~~~le~~~~~~~~~ 36 (410)
-.||.+||.|+.+|+..
T Consensus 64 ~~~v~eLe~everL~~E 80 (104)
T 3s9g_A 64 DARVRELELELDRLRAE 80 (104)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 34777777777776654
No 93
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.67 E-value=81 Score=30.82 Aligned_cols=30 Identities=17% Similarity=0.135 Sum_probs=17.6
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSK 36 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~ 36 (410)
+.+..|+.+++.+..+|++|+.++.+|...
T Consensus 26 ~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 26 AQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666554
No 94
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.42 E-value=1.2e+02 Score=23.41 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=26.2
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 015260 7 ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRC 42 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~~~~~~~~~~~~~~ 42 (410)
+....++.+.+.|.+++++|++-.+.|...+..|..
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~ 74 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCG 74 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455567777778888888888887778777776543
No 95
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=23.01 E-value=86 Score=22.48 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 015260 15 QLEALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 15 ~~~~l~~r~~~le~~~~~~~~~~~~ 39 (410)
.-++|.+.|.-|..||..|+..|+.
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3467888888888888888888764
No 96
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=22.10 E-value=1.2e+02 Score=23.73 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 015260 19 LQNRVKELEADNAKLLSK 36 (410)
Q Consensus 19 l~~r~~~le~~~~~~~~~ 36 (410)
|..++.+|..|+++|+.+
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGq 42 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQ 42 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 344444444444444333
No 97
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=22.00 E-value=54 Score=25.25 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=17.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHH
Q 015260 7 ELISSLQSQLEALQNRVKELEAD 29 (410)
Q Consensus 7 ~~~~~~~~~~~~l~~r~~~le~~ 29 (410)
++++.....++..++||++||++
T Consensus 26 dLA~~F~l~t~~~i~RI~~Le~~ 48 (72)
T 1wi9_A 26 DLAFQMGLRTQDAINRIQDLLTE 48 (72)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCChHHHHHHHHHHHHC
Confidence 45556667788889999999875
No 98
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.78 E-value=1.2e+02 Score=20.81 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 015260 17 EALQNRVKELEADNAKLLS 35 (410)
Q Consensus 17 ~~l~~r~~~le~~~~~~~~ 35 (410)
++|.+.|-.||.||+.|++
T Consensus 6 aqlenevaslenenetlkk 24 (49)
T 3he5_A 6 AQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHH
Confidence 3444444445555554443
No 99
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=20.32 E-value=1e+02 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=18.9
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 11 SLQSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 11 ~~~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
.+-.++|.|-+++++|-+++++|.+|.+
T Consensus 102 ~~laqLe~ls~qL~~ls~~v~~L~~q~~ 129 (140)
T 3iyn_Q 102 ALLAQLDSLTRELNVVSQQLLDLRQQVS 129 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777777776544
No 100
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=20.06 E-value=57 Score=26.96 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 015260 18 ALQNRVKELEADNAKLLSKLSL 39 (410)
Q Consensus 18 ~l~~r~~~le~~~~~~~~~~~~ 39 (410)
+|.+||.+||.++++|+..+..
T Consensus 1 ~~~~~l~~l~~~~~~l~~~l~~ 22 (149)
T 1rtm_1 1 AIEVKLANMEAEINTLKSKLEL 22 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
No 101
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=20.06 E-value=88 Score=24.13 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=17.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhh
Q 015260 13 QSQLEALQNRVKELEADNAKLLSKLS 38 (410)
Q Consensus 13 ~~~~~~l~~r~~~le~~~~~~~~~~~ 38 (410)
..=+..|..+.++|++|.++|+.+..
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777777777776643
Done!