Query 015261
Match_columns 410
No_of_seqs 309 out of 949
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:37:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2785 C2H2-type Zn-finger pr 100.0 1.2E-94 2.6E-99 707.3 20.0 380 1-409 1-389 (390)
2 PF12756 zf-C2H2_2: C2H2 type 99.8 3.3E-19 7.2E-24 146.5 2.9 99 184-287 1-100 (100)
3 PTZ00448 hypothetical protein; 99.7 3.1E-17 6.8E-22 162.5 3.9 51 3-53 314-364 (373)
4 KOG2482 Predicted C2H2-type Zn 99.6 1.5E-15 3.3E-20 147.8 5.7 224 4-289 145-381 (423)
5 KOG2462 C2H2-type Zn-finger pr 99.3 6.2E-12 1.4E-16 120.4 6.3 54 3-88 130-183 (279)
6 KOG2482 Predicted C2H2-type Zn 99.2 2.5E-11 5.4E-16 118.7 4.7 94 180-283 142-236 (423)
7 KOG2462 C2H2-type Zn-finger pr 99.1 5.7E-11 1.2E-15 113.9 4.4 106 3-259 161-266 (279)
8 KOG2505 Ankyrin repeat protein 99.0 1.1E-10 2.3E-15 119.3 3.0 50 3-52 66-115 (591)
9 KOG1074 Transcriptional repres 98.8 2.6E-09 5.6E-14 114.7 2.2 54 180-259 603-656 (958)
10 KOG1074 Transcriptional repres 98.8 1.2E-08 2.5E-13 109.8 6.8 50 183-258 880-929 (958)
11 KOG3608 Zn finger proteins [Ge 98.4 2.4E-07 5.1E-12 91.7 5.7 172 4-268 208-384 (467)
12 KOG3576 Ovo and related transc 98.4 1.9E-07 4E-12 86.3 3.0 23 3-25 117-139 (267)
13 PF12756 zf-C2H2_2: C2H2 type 98.2 4.9E-07 1.1E-11 73.9 2.3 77 5-93 1-77 (100)
14 KOG3608 Zn finger proteins [Ge 98.2 2.5E-06 5.5E-11 84.5 5.8 156 3-259 177-344 (467)
15 KOG3623 Homeobox transcription 98.1 6E-07 1.3E-11 95.6 1.1 124 3-260 210-333 (1007)
16 KOG3576 Ovo and related transc 98.0 2.6E-06 5.6E-11 78.9 1.2 50 183-258 146-195 (267)
17 KOG3623 Homeobox transcription 97.8 5E-06 1.1E-10 88.7 0.5 52 181-258 921-972 (1007)
18 PF12171 zf-C2H2_jaz: Zinc-fin 97.8 9.1E-06 2E-10 51.6 1.0 26 67-92 2-27 (27)
19 PHA00733 hypothetical protein 97.7 8E-05 1.7E-09 65.1 6.1 52 181-260 72-123 (128)
20 PF12874 zf-met: Zinc-finger o 97.6 2.6E-05 5.6E-10 48.3 1.6 25 67-91 1-25 (25)
21 PHA02768 hypothetical protein; 97.6 2.4E-05 5.2E-10 58.1 1.3 42 182-251 5-46 (55)
22 PHA02768 hypothetical protein; 97.6 3.3E-05 7.3E-10 57.4 1.7 42 3-81 5-46 (55)
23 PHA00732 hypothetical protein 97.4 0.00012 2.5E-09 58.8 2.9 47 182-259 1-47 (79)
24 PHA00732 hypothetical protein 97.3 0.00018 3.9E-09 57.7 2.6 49 3-91 1-49 (79)
25 smart00451 ZnF_U1 U1-like zinc 97.2 0.00012 2.5E-09 49.0 0.9 34 1-34 1-34 (35)
26 smart00451 ZnF_U1 U1-like zinc 97.2 0.00025 5.4E-09 47.3 2.2 30 66-95 3-32 (35)
27 PHA00733 hypothetical protein 97.1 0.00053 1.1E-08 60.0 4.3 25 66-90 99-123 (128)
28 KOG3993 Transcription factor ( 97.0 0.0009 2E-08 68.1 5.6 87 3-94 295-384 (500)
29 PHA00616 hypothetical protein 97.0 0.00024 5.1E-09 50.5 0.9 27 182-208 1-27 (44)
30 PLN03086 PRLI-interacting fact 97.0 0.0012 2.6E-08 70.6 6.5 50 181-258 503-562 (567)
31 PF12171 zf-C2H2_jaz: Zinc-fin 96.7 0.00051 1.1E-08 43.5 0.7 27 3-29 1-27 (27)
32 PF13912 zf-C2H2_6: C2H2-type 96.6 0.00075 1.6E-08 42.5 0.5 26 182-207 1-26 (27)
33 PF00096 zf-C2H2: Zinc finger, 96.5 0.0014 3E-08 39.6 1.6 22 67-88 1-22 (23)
34 PF13894 zf-C2H2_4: C2H2-type 96.4 0.0014 3E-08 39.4 0.9 24 183-206 1-24 (24)
35 PF13912 zf-C2H2_6: C2H2-type 96.3 0.0019 4E-08 40.6 1.3 24 3-26 1-24 (27)
36 PF05605 zf-Di19: Drought indu 96.2 0.0067 1.5E-07 44.8 3.8 51 3-89 2-52 (54)
37 PF12874 zf-met: Zinc-finger o 96.2 0.0018 3.9E-08 39.9 0.6 25 4-28 1-25 (25)
38 KOG0717 Molecular chaperone (D 96.0 0.0031 6.7E-08 65.2 1.5 29 67-95 293-321 (508)
39 KOG3993 Transcription factor ( 95.8 0.0029 6.2E-08 64.6 0.6 27 182-208 356-382 (500)
40 PF00096 zf-C2H2: Zinc finger, 95.8 0.0046 1E-07 37.2 1.2 22 234-258 1-22 (23)
41 PF13894 zf-C2H2_4: C2H2-type 95.7 0.0046 1E-07 37.0 1.1 23 4-26 1-23 (24)
42 PHA00616 hypothetical protein 95.7 0.0027 5.7E-08 45.2 -0.2 24 3-26 1-24 (44)
43 PF13465 zf-H2C2_2: Zinc-finge 95.6 0.0074 1.6E-07 37.9 1.5 20 59-78 7-26 (26)
44 PF05605 zf-Di19: Drought indu 95.5 0.023 5E-07 41.9 4.5 50 182-258 2-51 (54)
45 PF13465 zf-H2C2_2: Zinc-finge 95.4 0.0082 1.8E-07 37.7 1.4 26 197-248 1-26 (26)
46 KOG3408 U1-like Zn-finger-cont 95.2 0.0057 1.2E-07 52.4 0.1 81 16-97 4-88 (129)
47 PF13909 zf-H2C2_5: C2H2-type 94.6 0.015 3.2E-07 35.5 0.9 24 183-207 1-24 (24)
48 COG5189 SFP1 Putative transcri 94.3 0.01 2.2E-07 58.7 -0.5 69 2-87 348-419 (423)
49 KOG1146 Homeobox protein [Gene 94.1 0.059 1.3E-06 62.1 4.8 82 3-94 465-546 (1406)
50 PLN03086 PRLI-interacting fact 94.0 0.11 2.3E-06 56.1 6.2 73 182-258 453-536 (567)
51 smart00355 ZnF_C2H2 zinc finge 93.5 0.055 1.2E-06 32.5 1.9 21 67-87 1-21 (26)
52 KOG3408 U1-like Zn-finger-cont 93.1 0.047 1E-06 46.9 1.5 37 2-42 56-92 (129)
53 KOG2785 C2H2-type Zn-finger pr 92.9 0.1 2.2E-06 53.0 3.8 79 3-93 166-247 (390)
54 KOG2231 Predicted E3 ubiquitin 92.0 0.16 3.4E-06 55.5 4.1 79 182-264 115-211 (669)
55 smart00355 ZnF_C2H2 zinc finge 91.8 0.17 3.7E-06 30.2 2.5 22 234-258 1-22 (26)
56 KOG2231 Predicted E3 ubiquitin 90.7 0.59 1.3E-05 51.2 6.8 69 184-257 184-260 (669)
57 PF09237 GAGA: GAGA factor; I 89.6 0.16 3.4E-06 37.3 1.0 27 181-207 23-49 (54)
58 KOG1146 Homeobox protein [Gene 84.9 0.38 8.3E-06 55.7 1.0 80 180-265 516-618 (1406)
59 KOG4173 Alpha-SNAP protein [In 84.1 0.6 1.3E-05 43.9 1.8 63 5-93 108-172 (253)
60 PF12013 DUF3505: Protein of u 83.7 2 4.2E-05 36.1 4.7 27 181-207 79-109 (109)
61 COG5236 Uncharacterized conser 82.7 0.46 1E-05 47.8 0.5 79 183-264 152-249 (493)
62 COG5236 Uncharacterized conser 82.4 1.3 2.8E-05 44.7 3.4 72 184-258 222-303 (493)
63 COG5112 UFD2 U1-like Zn-finger 81.5 0.52 1.1E-05 39.7 0.3 35 63-97 52-86 (126)
64 PLN02748 tRNA dimethylallyltra 81.4 0.93 2E-05 48.0 2.2 32 65-96 417-449 (468)
65 PF13821 DUF4187: Domain of un 80.7 1.6 3.5E-05 32.6 2.7 29 219-253 16-44 (55)
66 PF06220 zf-U1: U1 zinc finger 80.5 1.2 2.6E-05 30.7 1.7 30 66-95 3-34 (38)
67 PF13913 zf-C2HC_2: zinc-finge 79.6 1.4 3.1E-05 27.4 1.8 22 3-25 2-23 (25)
68 PF13909 zf-H2C2_5: C2H2-type 78.1 1.8 3.9E-05 26.1 1.9 22 67-89 1-22 (24)
69 PF09237 GAGA: GAGA factor; I 76.2 2 4.4E-05 31.6 2.0 26 232-260 23-48 (54)
70 PF13913 zf-C2HC_2: zinc-finge 75.8 2.5 5.5E-05 26.2 2.1 21 234-258 3-23 (25)
71 COG5112 UFD2 U1-like Zn-finger 75.5 0.98 2.1E-05 38.1 0.2 39 3-45 55-95 (126)
72 smart00586 ZnF_DBF Zinc finger 75.5 1.5 3.2E-05 32.0 1.1 26 65-93 4-29 (49)
73 COG5189 SFP1 Putative transcri 75.1 0.71 1.5E-05 46.0 -0.8 70 181-257 348-419 (423)
74 KOG2186 Cell growth-regulating 74.4 1.7 3.8E-05 42.0 1.6 49 1-87 1-49 (276)
75 COG5188 PRP9 Splicing factor 3 72.7 4.5 9.7E-05 41.1 4.1 35 2-36 237-271 (470)
76 PF06220 zf-U1: U1 zinc finger 72.7 1.9 4E-05 29.7 1.0 34 1-34 1-36 (38)
77 COG4049 Uncharacterized protei 72.3 1.8 4E-05 32.3 1.0 29 62-90 13-41 (65)
78 KOG2893 Zn finger protein [Gen 72.0 1.2 2.5E-05 42.9 -0.2 45 5-88 12-56 (341)
79 PF12013 DUF3505: Protein of u 70.9 3.5 7.6E-05 34.6 2.5 70 181-259 10-107 (109)
80 KOG4173 Alpha-SNAP protein [In 69.5 2 4.3E-05 40.5 0.8 64 181-265 105-173 (253)
81 PF05443 ROS_MUCR: ROS/MUCR tr 69.0 1.8 3.9E-05 38.2 0.3 25 182-209 72-96 (132)
82 PF07535 zf-DBF: DBF zinc fing 66.0 4.1 8.9E-05 29.7 1.7 26 66-94 5-30 (49)
83 smart00734 ZnF_Rad18 Rad18-lik 58.4 8.2 0.00018 24.2 1.8 19 68-87 3-21 (26)
84 KOG2893 Zn finger protein [Gen 58.3 2.3 4.9E-05 41.0 -1.1 23 184-206 12-34 (341)
85 COG5188 PRP9 Splicing factor 3 56.1 4.9 0.00011 40.8 0.8 31 66-96 238-268 (470)
86 KOG4727 U1-like Zn-finger prot 55.2 6.4 0.00014 36.1 1.3 30 65-94 74-103 (193)
87 PRK04860 hypothetical protein; 53.0 7.7 0.00017 35.2 1.5 38 181-248 118-155 (160)
88 PF05443 ROS_MUCR: ROS/MUCR tr 52.9 9.4 0.0002 33.7 2.0 39 233-288 72-111 (132)
89 KOG1994 Predicted RNA binding 52.1 9.6 0.00021 36.5 2.0 32 218-255 227-258 (268)
90 PF08790 zf-LYAR: LYAR-type C2 51.7 3.4 7.3E-05 26.6 -0.7 20 4-24 1-20 (28)
91 PF04988 AKAP95: A-kinase anch 51.6 28 0.00061 31.7 4.8 90 4-94 1-120 (165)
92 KOG1994 Predicted RNA binding 50.6 6.4 0.00014 37.6 0.6 21 181-201 238-258 (268)
93 COG4957 Predicted transcriptio 48.5 8.4 0.00018 34.0 1.0 24 183-209 77-100 (148)
94 PF04959 ARS2: Arsenite-resist 45.7 14 0.00031 35.2 2.1 29 62-90 73-101 (214)
95 PF02892 zf-BED: BED zinc fing 44.0 17 0.00036 25.2 1.8 25 64-88 14-42 (45)
96 COG4049 Uncharacterized protei 43.2 8.3 0.00018 28.9 0.1 27 182-208 17-43 (65)
97 PTZ00448 hypothetical protein; 41.9 16 0.00035 37.5 1.9 32 66-97 314-345 (373)
98 KOG0717 Molecular chaperone (D 41.7 11 0.00024 39.7 0.8 28 234-264 293-320 (508)
99 PF13878 zf-C2H2_3: zinc-finge 41.1 18 0.00039 25.2 1.5 22 4-25 14-37 (41)
100 PF15269 zf-C2H2_7: Zinc-finge 36.0 21 0.00045 25.7 1.2 22 182-203 20-41 (54)
101 KOG2837 Protein containing a U 35.6 5.7 0.00012 39.0 -2.3 28 66-93 25-52 (309)
102 KOG2593 Transcription initiati 35.4 26 0.00057 36.6 2.3 31 232-265 127-159 (436)
103 KOG0402 60S ribosomal protein 35.2 15 0.00033 29.8 0.4 12 66-77 54-65 (92)
104 PF12907 zf-met2: Zinc-binding 33.1 20 0.00043 25.1 0.7 27 67-93 2-31 (40)
105 KOG2071 mRNA cleavage and poly 33.0 20 0.00043 38.9 1.0 26 3-28 418-445 (579)
106 PF09986 DUF2225: Uncharacteri 32.7 10 0.00023 35.9 -1.0 36 3-38 5-40 (214)
107 PF04988 AKAP95: A-kinase anch 32.2 27 0.00058 31.9 1.6 27 67-93 1-27 (165)
108 PF02148 zf-UBP: Zn-finger in 32.0 18 0.00038 27.3 0.3 36 233-268 11-47 (63)
109 COG1327 Predicted transcriptio 31.3 21 0.00046 32.1 0.8 22 231-255 26-47 (156)
110 PF11931 DUF3449: Domain of un 30.3 17 0.00037 34.2 0.0 36 3-40 101-137 (196)
111 KOG4167 Predicted DNA-binding 29.0 13 0.00028 41.2 -1.1 30 65-94 791-820 (907)
112 smart00614 ZnF_BED BED zinc fi 28.8 37 0.0008 24.3 1.6 23 66-88 18-45 (50)
113 TIGR00244 transcriptional regu 28.4 14 0.00029 33.2 -0.9 19 232-253 27-45 (147)
114 KOG2186 Cell growth-regulating 27.5 30 0.00065 33.8 1.1 46 183-257 4-49 (276)
115 COG2888 Predicted Zn-ribbon RN 24.3 40 0.00088 25.6 1.1 16 228-243 45-60 (61)
116 KOG3088 Secretory carrier memb 23.8 97 0.0021 30.9 3.9 30 381-410 82-111 (313)
117 PF04780 DUF629: Protein of un 23.8 50 0.0011 35.1 2.1 59 194-260 22-81 (466)
118 KOG4167 Predicted DNA-binding 23.4 19 0.00042 40.0 -1.1 25 3-29 792-816 (907)
119 KOG2071 mRNA cleavage and poly 23.3 44 0.00095 36.3 1.5 25 181-205 417-441 (579)
120 COG5246 PRP11 Splicing factor 23.1 38 0.00082 31.5 0.9 31 66-96 53-83 (222)
121 PF04423 Rad50_zn_hook: Rad50 23.1 69 0.0015 23.3 2.1 14 68-81 22-35 (54)
122 PRK14890 putative Zn-ribbon RN 22.9 46 0.001 25.3 1.2 16 228-243 43-58 (59)
123 PF04959 ARS2: Arsenite-resist 22.8 48 0.0011 31.6 1.6 42 233-283 77-118 (214)
124 PF11931 DUF3449: Domain of un 22.2 29 0.00064 32.6 0.0 29 65-93 100-129 (196)
125 PRK00464 nrdR transcriptional 21.7 19 0.0004 32.6 -1.4 20 233-255 28-47 (154)
126 KOG1842 FYVE finger-containing 21.6 74 0.0016 33.6 2.7 28 3-31 15-42 (505)
127 PF14475 Mso1_Sec1_bdg: Sec1-b 21.3 25 0.00055 24.7 -0.5 20 326-345 19-38 (41)
128 PF04780 DUF629: Protein of un 21.0 51 0.0011 35.1 1.4 30 4-34 58-87 (466)
129 PF10513 EPL1: Enhancer of pol 20.5 73 0.0016 28.3 2.2 28 28-55 131-158 (160)
130 PF09986 DUF2225: Uncharacteri 20.4 41 0.0009 31.8 0.6 16 65-80 4-19 (214)
131 KOG3288 OTU-like cysteine prot 20.4 1.1E+02 0.0025 29.9 3.6 33 61-93 271-303 (307)
No 1
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=100.00 E-value=1.2e-94 Score=707.27 Aligned_cols=380 Identities=40% Similarity=0.653 Sum_probs=289.1
Q ss_pred CCCCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhc--CCCCCcccccCcCCccCC
Q 015261 1 MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNK--NATPMTYSCGLCGKGYRS 78 (410)
Q Consensus 1 ~~~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~--~~~~~~~~C~~C~K~f~s 78 (410)
|+.|||++|.++|.+++.||.||||||||||||||||+|||||+++|+.++.+....... .+++..+.|.+|+|+|.+
T Consensus 1 st~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s 80 (390)
T KOG2785|consen 1 STGFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFAS 80 (390)
T ss_pred CCcceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccC
Confidence 789999999999999999999999999999999999999999999999999876544433 456778999999999999
Q ss_pred hHHHHHHHhhhhhhhhhccCCCchhhhhhhccCCCCCCCCCCCCccccCCCCCCCCcccccccCcchhhhhhhccccccc
Q 015261 79 SKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNL 158 (410)
Q Consensus 79 ~~~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ee~~~~e~~~~~~~~~~~~~ 158 (410)
.+++.+||.||+|+.+..+.....+.+.+.+...+.+.+.. ... -.+.+..|-|.+.++ ++..+.
T Consensus 81 ~~a~~~hl~Sk~h~~~~~~~~r~~e~d~a~~~q~~~~~p~~----l~~----~~e~e~~~~E~~~~~-------d~~~e~ 145 (390)
T KOG2785|consen 81 PKAHENHLKSKKHVENLSNHQRSEEGDSAKISQLPSRRPSN----LQN----KGESELKWYEVDSDE-------DSSEEE 145 (390)
T ss_pred hhhHHHHHHHhhcchhhhhhhccccccchhhhhccccCccc----ccc----CCCcccchhhccccc-------ccchhh
Confidence 99999999999999987765432222222333332221100 000 001223444333221 000000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccc
Q 015261 159 NVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY 238 (410)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~i~p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~ 238 (410)
.. ++..++++++ .+...+..|+.||||++.|++++.|+.||+.+||||||+++||+|+.|||.||++||+.+++||+
T Consensus 146 ~~--dd~~Edi~~d-~~~e~e~~Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~ 222 (390)
T KOG2785|consen 146 EE--DDEEEDIEED-GDDEDELIPTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLF 222 (390)
T ss_pred cc--Ccchhhhhhc-cchhcccCCcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEE
Confidence 00 0001111111 11223445699999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccCCHHHHHHHHHhcCCcccCCCCCCchHHHhhhhhcCccCcCcCccccccccccCCCCceee--cC-ceeEEE
Q 015261 239 CNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSYMDEDGKQLISSSDMANTVEL--GG-GSELII 315 (410)
Q Consensus 239 C~~~gk~F~s~~alr~HM~~k~HCki~ye~~~~ee~~E~~dFYDFs~sy~d~~~~~~~~~~~~~~~~~l--~~-g~eL~L 315 (410)
||..|+.|+|+++||+||.+|+||||+| ++ |+++||++|||||+||+|..+.+.+...++.+++.+ .+ -+||+|
T Consensus 223 CN~~~~~f~sleavr~HM~~K~HCkl~y-d~--ee~~El~efYDfsssY~d~~~~~~~~~~e~~~~~~l~~g~~~~el~l 299 (390)
T KOG2785|consen 223 CNELGRPFSSLEAVRAHMRDKGHCKLPY-DG--EERLELAEFYDFSSSYPDIAENQDPDSAEEDPTDELEGGDELYELTL 299 (390)
T ss_pred eccccCcccccHHHHHHHhhccCcccCC-Ch--HHHhhhhhhhcCcccccCcccCCCCcchhcCCcccccccceeeeeec
Confidence 9999999999999999999999999999 54 899999999999999999765555443443334444 22 279999
Q ss_pred ecCCCCCCCcceeeccccccccccCCCCCCCch----HHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHHhhhhhhhh
Q 015261 316 TKRTDKGTSTKTFGSREYLRYYRQKPRPSPANN----VAITAALASRYKSMGLATVQTREHMVRMKVIKEMNRTGVEAMR 391 (410)
Q Consensus 316 ~~~~~~~psG~~iGHRs~~rYYrQ~l~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 391 (410)
|||++||||+|+|||||||+|++... .+++.+.+..|+++||++.+...+....++++.++|.+ .+|.
T Consensus 300 -------psga~vGhRsl~RYykQ~l~p~~~~~~~~~r~~~~~~~~~~~a~~~t~~~~~~~k~~~~~~k~v~R~~-~r~~ 371 (390)
T KOG2785|consen 300 -------PSGARVGHRSLMRYYKQNLRPSSAVVRLVSRRALSRVKRFYPALGWTGTTGVRAKMQARDMKFVERGR-RRFA 371 (390)
T ss_pred -------ccccccccHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999999998643 33344566778899999988765555556666666654 6799
Q ss_pred hhhccccccccCCCCCCC
Q 015261 392 TRVGMKNNIIRNLPKNVP 409 (410)
Q Consensus 392 ~k~g~k~N~~~~~~~~~~ 409 (410)
++|||++|..+||+-++-
T Consensus 372 ~~~g~k~n~~~~~~~~~~ 389 (390)
T KOG2785|consen 372 LRVGMKNNYRDQLHQRVQ 389 (390)
T ss_pred HHhcchhhHHHHHhhhhc
Confidence 999999999999987664
No 2
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=99.75 E-value=3.3e-19 Score=146.48 Aligned_cols=99 Identities=45% Similarity=0.832 Sum_probs=28.3
Q ss_pred ccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHHHHhcCCcc
Q 015261 184 CCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCK 263 (410)
Q Consensus 184 ~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~HM~~k~HCk 263 (410)
+|+||+..|++...++.||...|+|.+|+..++++..+|+.|+..++...+.|.+|+ +.|.+..+|+.||+.++|++
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~---~~f~s~~~l~~Hm~~~~H~~ 77 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCN---KTFRSREALQEHMRSKHHKK 77 (100)
T ss_dssp ------------------------------------------------SSEEBSSSS----EESSHHHHHHHHHHTTTTC
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccC---CCCcCHHHHHHHHcCccCCC
Confidence 599999999999999999999999999999999999999999999998889999999 99999999999999999999
Q ss_pred cCCCCCCchHHHhhhhhcCc-cCcC
Q 015261 264 IHFGDGDDEEEAELEEFYDY-SSSY 287 (410)
Q Consensus 264 i~ye~~~~ee~~E~~dFYDF-s~sy 287 (410)
+.++.+ ....++..|||| +.+|
T Consensus 78 ~~~~~~--~~~~~~~~~y~~~~~~~ 100 (100)
T PF12756_consen 78 RNSESE--ESWEEFEKFYDFWSNDY 100 (100)
T ss_dssp -S-----------------------
T ss_pred cccccc--cccccccccccccccCC
Confidence 988653 668899999999 6654
No 3
>PTZ00448 hypothetical protein; Provisional
Probab=99.66 E-value=3.1e-17 Score=162.53 Aligned_cols=51 Identities=35% Similarity=0.648 Sum_probs=48.9
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHH
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAA 53 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~ 53 (410)
.|+|++|++.|.+...||.||||||||||||||++||||||+++|..++..
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKRkl~gLppvse~eF~~~i~d 364 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKRNARKMEPISEEEFLELQQD 364 (373)
T ss_pred CccccccccccCCHHHHHHHhhhhHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 699999999999999999999999999999999999999999999998764
No 4
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=99.58 E-value=1.5e-15 Score=147.83 Aligned_cols=224 Identities=22% Similarity=0.337 Sum_probs=153.1
Q ss_pred CcccccccccC-ChHHHhhhhhhccccchhhhhhcCCC--CCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCChH
Q 015261 4 LTCNSCNREFN-DDAEQKLHYKSDWHRYNLKRKVAGVP--GVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSK 80 (410)
Q Consensus 4 ftC~~C~~~F~-~~~~qr~H~ksdwHrYNlKRrva~Lp--pvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s~~ 80 (410)
..|.+|+..+. +++....|+-.. |..|+ |+| -|...+|..++..- ...+.|..|.|.|+.++
T Consensus 145 lqClFCn~e~lgnRs~~l~Hlf~~-H~lni-----GlpDniVyvnelLehLkek---------L~r~~CLyCekifrdkn 209 (423)
T KOG2482|consen 145 LQCLFCNNEGLGNRSEILEHLFHV-HGLNI-----GLPDNIVYVNELLEHLKEK---------LERLRCLYCEKIFRDKN 209 (423)
T ss_pred eEEEEecchhcccHHHHHHHHHHH-hhhcc-----CCCcceeeHHHHHHHHHHH---------HhhheeeeeccccCCcH
Confidence 46999998887 888999999887 78898 998 78888888876641 13578999999999999
Q ss_pred HHHHHHhhhhhhh-hhccCC-CchhhhhhhccCC---CCCCCCCCCCccccCCCCCCCCcccccccCcchhhhhhhcccc
Q 015261 81 ALAQHLNSRSHIM-RASQGT-SNEEKEKVIIKPI---PLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSL 155 (410)
Q Consensus 81 ~l~~Hl~skkHk~-~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~e~ee~~~~e~~~~~~~~~~ 155 (410)
+|+.||++|.|+. ++++.. ++ ..++..+ .++....+.-..+.. ++..+++++|.+|.++.
T Consensus 210 tLkeHMrkK~HrrinPknreYDk----fyiINY~ev~ks~t~~~~e~dret~-~d~~E~D~~wsDw~ed~---------- 274 (423)
T KOG2482|consen 210 TLKEHMRKKRHRRINPKNREYDK----FYIINYLEVGKSWTIVHSEDDRETN-EDINETDDTWSDWNEDD---------- 274 (423)
T ss_pred HHHHHHHhccCcccCCCccccce----EEEEeHhhcCCccchhhhhhhhhhh-ccccccccchhhhhcCC----------
Confidence 9999999999988 344332 11 0111110 000000000000100 11223344565543211
Q ss_pred cccCCCCCCCCCCccCCCCCCCCCCCCcccCCCCCCCCChhHHhhhhhhhhcCCCCCc--c---cccChHHHHHHHHhHh
Q 015261 156 TNLNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDV--E---YLKDPKGLLTYLGLKV 230 (410)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~i~p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~--~---~lvd~~gLl~yl~~ki 230 (410)
. +.....|+||.+...++..+.+||...|.|.+-.. + .++....+++|++.+.
T Consensus 275 ---------------------a-~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~ 332 (423)
T KOG2482|consen 275 ---------------------A-EALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQK 332 (423)
T ss_pred ---------------------C-CccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHh
Confidence 0 01125899999999999999999999999988544 3 2578899999999886
Q ss_pred cCCccccccCCCCcccCCHHHHHHHHHhcCCcccCCCCCCchHHHhhhhhcCccCcCcC
Q 015261 231 KRDFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDYSSSYMD 289 (410)
Q Consensus 231 ~~~~~Cl~C~~~gk~F~s~~alr~HM~~k~HCki~ye~~~~ee~~E~~dFYDFs~sy~d 289 (410)
. .-.|-.|. -.|.+..+++.||....|--|-.+ +.-+.-.+|| | +.|.+
T Consensus 333 ~-~~~c~~cd---~~F~~e~~l~~hm~e~k~l~i~pd----~~iwD~~e~~-f-P~~eN 381 (423)
T KOG2482|consen 333 K-KSRCAECD---LSFWKEPGLLIHMVEDKHLSILPD----EVIWDPREFF-F-PYIEN 381 (423)
T ss_pred h-cccccccc---ccccCcchhhhhccccccccccCc----ccccCchhhc-c-ceecC
Confidence 5 46899999 899999999999999877766542 3345555666 5 44543
No 5
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.26 E-value=6.2e-12 Score=120.44 Aligned_cols=54 Identities=28% Similarity=0.659 Sum_probs=45.0
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCChHHH
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL 82 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s~~~l 82 (410)
.|.|..|+..+.+...|-.|..+ || |+. ..+.+.|++|+|.|.+-.+|
T Consensus 130 r~~c~eCgk~ysT~snLsrHkQ~--H~-----------~~~-------------------s~ka~~C~~C~K~YvSmpAL 177 (279)
T KOG2462|consen 130 RYKCPECGKSYSTSSNLSRHKQT--HR-----------SLD-------------------SKKAFSCKYCGKVYVSMPAL 177 (279)
T ss_pred ceeccccccccccccccchhhcc--cc-----------ccc-------------------ccccccCCCCCceeeehHHH
Confidence 58999999999999999999998 64 110 13567899999999999999
Q ss_pred HHHHhh
Q 015261 83 AQHLNS 88 (410)
Q Consensus 83 ~~Hl~s 88 (410)
+-|++.
T Consensus 178 kMHirT 183 (279)
T KOG2462|consen 178 KMHIRT 183 (279)
T ss_pred hhHhhc
Confidence 999975
No 6
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=99.15 E-value=2.5e-11 Score=118.71 Aligned_cols=94 Identities=26% Similarity=0.475 Sum_probs=85.5
Q ss_pred CCCcccCCCCCCC-CChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHHHHh
Q 015261 180 FDPACCFMCDLPH-DAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA 258 (410)
Q Consensus 180 i~p~~ClfC~~~f-~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~HM~~ 258 (410)
+-..+|+||+..+ ...+..+.||+..||+.|.-++.+|....||.+|.+++. .++|+||. |.|.....|+.||+.
T Consensus 142 ~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~-r~~CLyCe---kifrdkntLkeHMrk 217 (423)
T KOG2482|consen 142 IFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLE-RLRCLYCE---KIFRDKNTLKEHMRK 217 (423)
T ss_pred eeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHh-hheeeeec---cccCCcHHHHHHHHh
Confidence 4456899999987 588999999999999999999999999999999999987 58999999 999999999999999
Q ss_pred cCCcccCCCCCCchHHHhhhhhcCc
Q 015261 259 KRHCKIHFGDGDDEEEAELEEFYDY 283 (410)
Q Consensus 259 k~HCki~ye~~~~ee~~E~~dFYDF 283 (410)
|+|-+|.-.. .||..||-.
T Consensus 218 K~HrrinPkn------reYDkfyiI 236 (423)
T KOG2482|consen 218 KRHRRINPKN------REYDKFYII 236 (423)
T ss_pred ccCcccCCCc------cccceEEEE
Confidence 9999997653 699999954
No 7
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.10 E-value=5.7e-11 Score=113.90 Aligned_cols=106 Identities=23% Similarity=0.531 Sum_probs=91.7
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCChHHH
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL 82 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s~~~l 82 (410)
.|.|.+|+++|.+..+|+.|.+| | .| +.+|.+|||.|...=-|
T Consensus 161 a~~C~~C~K~YvSmpALkMHirT--H---------~l--------------------------~c~C~iCGKaFSRPWLL 203 (279)
T KOG2462|consen 161 AFSCKYCGKVYVSMPALKMHIRT--H---------TL--------------------------PCECGICGKAFSRPWLL 203 (279)
T ss_pred cccCCCCCceeeehHHHhhHhhc--c---------CC--------------------------CcccccccccccchHHh
Confidence 58899999999999999999999 6 22 46799999999999889
Q ss_pred HHHHhhhhhhhhhccCCCchhhhhhhccCCCCCCCCCCCCccccCCCCCCCCcccccccCcchhhhhhhcccccccCCCC
Q 015261 83 AQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGS 162 (410)
Q Consensus 83 ~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ee~~~~e~~~~~~~~~~~~~~~~~ 162 (410)
+.|+|+.. +
T Consensus 204 QGHiRTHT--------------------------------------------G--------------------------- 212 (279)
T KOG2462|consen 204 QGHIRTHT--------------------------------------------G--------------------------- 212 (279)
T ss_pred hccccccc--------------------------------------------C---------------------------
Confidence 98887511 0
Q ss_pred CCCCCCccCCCCCCCCCCCCcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCC
Q 015261 163 PADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDR 242 (410)
Q Consensus 163 ~~~~~~~~~~~~~~~~~i~p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~ 242 (410)
..|+.|..|++.|.+.++|..||.+|-+ .+.|+|.-|+
T Consensus 213 -----------------EKPF~C~hC~kAFADRSNLRAHmQTHS~-----------------------~K~~qC~~C~-- 250 (279)
T KOG2462|consen 213 -----------------EKPFSCPHCGKAFADRSNLRAHMQTHSD-----------------------VKKHQCPRCG-- 250 (279)
T ss_pred -----------------CCCccCCcccchhcchHHHHHHHHhhcC-----------------------CccccCcchh--
Confidence 1689999999999999999999999655 3479999999
Q ss_pred CcccCCHHHHHHHHHhc
Q 015261 243 CHPFNSLEAVRKHMEAK 259 (410)
Q Consensus 243 gk~F~s~~alr~HM~~k 259 (410)
|+|.-..-|.+|..+.
T Consensus 251 -KsFsl~SyLnKH~ES~ 266 (279)
T KOG2462|consen 251 -KSFALKSYLNKHSESA 266 (279)
T ss_pred -hHHHHHHHHHHhhhhc
Confidence 9999999999998764
No 8
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.02 E-value=1.1e-10 Score=119.30 Aligned_cols=50 Identities=42% Similarity=0.762 Sum_probs=47.0
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHH
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQA 52 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~ 52 (410)
..+|++|++.|.+...||.||++||||+|+||+++++|++++++|.....
T Consensus 66 ~~~CstCq~~F~s~~eqr~HyksD~HR~N~Krkl~~~~ils~edFe~i~s 115 (591)
T KOG2505|consen 66 SDQCSTCQIPFGSRQEQREHYKSDWHRFNTKRKLRGKPILSEEDFEGIIS 115 (591)
T ss_pred cccccccCCccccHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHhhh
Confidence 46899999999999999999999999999999999999999999987654
No 9
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=98.76 E-value=2.6e-09 Score=114.70 Aligned_cols=54 Identities=24% Similarity=0.533 Sum_probs=46.5
Q ss_pred CCCcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHHHHhc
Q 015261 180 FDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK 259 (410)
Q Consensus 180 i~p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~HM~~k 259 (410)
-+|.+|+||-+..+-.+.|..|-++|.| ..+|+|-.|+ |.|.+...|+.||-.+
T Consensus 603 TdPNqCiiC~rVlSC~saLqmHyrtHtG-----------------------ERPFkCKiCg---RAFtTkGNLkaH~~vH 656 (958)
T KOG1074|consen 603 TDPNQCIICLRVLSCPSALQMHYRTHTG-----------------------ERPFKCKICG---RAFTTKGNLKAHMSVH 656 (958)
T ss_pred CCccceeeeeecccchhhhhhhhhcccC-----------------------cCcccccccc---chhccccchhhccccc
Confidence 4789999999999999999999999777 3488999998 8999999999998653
No 10
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=98.75 E-value=1.2e-08 Score=109.81 Aligned_cols=50 Identities=22% Similarity=0.600 Sum_probs=45.8
Q ss_pred cccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHHHHh
Q 015261 183 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA 258 (410)
Q Consensus 183 ~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~HM~~ 258 (410)
..|-.|++.|++..+|-.||++|.| .+++.|..|+ +.|.....|+.||.+
T Consensus 880 h~C~vCgk~FsSSsALqiH~rTHtg-----------------------~KPF~C~fC~---~aFttrgnLKvHMgt 929 (958)
T KOG1074|consen 880 HVCNVCGKQFSSSAALEIHMRTHTG-----------------------PKPFFCHFCE---EAFTTRGNLKVHMGT 929 (958)
T ss_pred hhhccchhcccchHHHHHhhhcCCC-----------------------CCCccchhhh---hhhhhhhhhhhhhcc
Confidence 5699999999999999999999766 3489999999 999999999999993
No 11
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=98.45 E-value=2.4e-07 Score=91.68 Aligned_cols=172 Identities=17% Similarity=0.263 Sum_probs=110.4
Q ss_pred CcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHH---HHHHhhhcCCCCCcccccCcCCccCChH
Q 015261 4 LTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQA---ALAQEKNKNATPMTYSCGLCGKGYRSSK 80 (410)
Q Consensus 4 ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~---~l~~~~~~~~~~~~~~C~~C~K~f~s~~ 80 (410)
..|.+|+.-|.+...+-.|.+-. -...--|.-+.....+++ .|.-+...+ -..|+|+.|..+..+..
T Consensus 208 vACp~Cg~~F~~~tkl~DH~rRq--------t~l~~n~fqC~~C~KrFaTeklL~~Hv~rH--vn~ykCplCdmtc~~~s 277 (467)
T KOG3608|consen 208 VACPHCGELFRTKTKLFDHLRRQ--------TELNTNSFQCAQCFKRFATEKLLKSHVVRH--VNCYKCPLCDMTCSSAS 277 (467)
T ss_pred EecchHHHHhccccHHHHHHHhh--------hhhcCCchHHHHHHHHHhHHHHHHHHHHHh--hhcccccccccCCCChH
Confidence 46888888888888888887642 111222555554443332 122222222 24689999999999999
Q ss_pred HHHHHHhhhhhhhhhccCCCchhhhhhhccCCCCCCCCCCCCccccCCCCCCCCcccccccCcchhhhhhhcccccccCC
Q 015261 81 ALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNV 160 (410)
Q Consensus 81 ~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ee~~~~e~~~~~~~~~~~~~~~ 160 (410)
.|.+||+-+.-+.++-+-. ..+. .=+..+++.-
T Consensus 278 sL~~H~r~rHs~dkpfKCd---~Cd~--------------------------------~c~~esdL~k------------ 310 (467)
T KOG3608|consen 278 SLTTHIRYRHSKDKPFKCD---ECDT--------------------------------RCVRESDLAK------------ 310 (467)
T ss_pred HHHHHHHhhhccCCCcccc---chhh--------------------------------hhccHHHHHH------------
Confidence 9999999866543211100 0000 0000011110
Q ss_pred CCCCCCCCccCCCCCCCCCCCCcccCC--CCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccc
Q 015261 161 GSPADDDLEEDDDDGAFEEFDPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLY 238 (410)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~i~p~~Clf--C~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~ 238 (410)
+. .--.-+.++|.+ |..++.+...+..||..+|-.+-| .+|.|-.
T Consensus 311 --H~-----------~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np--------------------~~Y~CH~ 357 (467)
T KOG3608|consen 311 --HV-----------QVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNP--------------------ILYACHC 357 (467)
T ss_pred --HH-----------HhccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCC--------------------Cceeeec
Confidence 00 000115689999 999999999999999999933222 2689999
Q ss_pred cCCCCcccCCHHHHHHHHHhcCCcccCCCC
Q 015261 239 CNDRCHPFNSLEAVRKHMEAKRHCKIHFGD 268 (410)
Q Consensus 239 C~~~gk~F~s~~alr~HM~~k~HCki~ye~ 268 (410)
|+ |.|.+-.+|-.|.+.|.--+|||+-
T Consensus 358 Cd---r~ft~G~~L~~HL~kkH~f~~PsGh 384 (467)
T KOG3608|consen 358 CD---RFFTSGKSLSAHLMKKHGFRLPSGH 384 (467)
T ss_pred ch---hhhccchhHHHHHHHhhcccCCCCC
Confidence 99 9999999999999999999999974
No 12
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=98.38 E-value=1.9e-07 Score=86.33 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=19.6
Q ss_pred CCcccccccccCChHHHhhhhhh
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKS 25 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ks 25 (410)
.|+|..|++.|.-.-.|-.|||.
T Consensus 117 ~ftCrvCgK~F~lQRmlnrh~kc 139 (267)
T KOG3576|consen 117 SFTCRVCGKKFGLQRMLNRHLKC 139 (267)
T ss_pred eeeeehhhhhhhHHHHHHHHhhh
Confidence 48888888888888888888887
No 13
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=98.24 E-value=4.9e-07 Score=73.85 Aligned_cols=77 Identities=22% Similarity=0.453 Sum_probs=25.9
Q ss_pred cccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCChHHHHH
Q 015261 5 TCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQ 84 (410)
Q Consensus 5 tC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s~~~l~~ 84 (410)
.|..|+..|.+...++.||+.. |.+++.. ...|. ....+...+. ......+.|.+|++.|.+..+|..
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~-H~~~~~~-~~~l~--~~~~~~~~~~--------~~~~~~~~C~~C~~~f~s~~~l~~ 68 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKK-HGFDIPD-QKYLV--DPNRLLNYLR--------KKVKESFRCPYCNKTFRSREALQE 68 (100)
T ss_dssp ------------------------------------------------------------SSEEBSSSS-EESSHHHHHH
T ss_pred Cccccccccccccccccccccc-ccccccc-ccccc--cccccccccc--------cccCCCCCCCccCCCCcCHHHHHH
Confidence 4999999999999999999886 7766531 11110 0001111000 011225899999999999999999
Q ss_pred HHhhhhhhh
Q 015261 85 HLNSRSHIM 93 (410)
Q Consensus 85 Hl~skkHk~ 93 (410)
||+++.|..
T Consensus 69 Hm~~~~H~~ 77 (100)
T PF12756_consen 69 HMRSKHHKK 77 (100)
T ss_dssp HHHHTTTTC
T ss_pred HHcCccCCC
Confidence 999999987
No 14
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=98.17 E-value=2.5e-06 Score=84.53 Aligned_cols=156 Identities=19% Similarity=0.354 Sum_probs=106.6
Q ss_pred CCccc--ccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHH---HHHHhhhcCCCCCcccccCcCCccC
Q 015261 3 GLTCN--SCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQA---ALAQEKNKNATPMTYSCGLCGKGYR 77 (410)
Q Consensus 3 ~ftC~--~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~---~l~~~~~~~~~~~~~~C~~C~K~f~ 77 (410)
.+.|+ .|-..|.+...||.|.++ |. -.||.. .|...+.|..+-. -+.++... ....|.|..|.|.|.
T Consensus 177 v~~C~W~~Ct~~~~~k~~LreH~r~--Hs---~eKvvA-Cp~Cg~~F~~~tkl~DH~rRqt~l--~~n~fqC~~C~KrFa 248 (467)
T KOG3608|consen 177 VTMCNWAMCTKHMGNKYRLREHIRT--HS---NEKVVA-CPHCGELFRTKTKLFDHLRRQTEL--NTNSFQCAQCFKRFA 248 (467)
T ss_pred eeeccchhhhhhhccHHHHHHHHHh--cC---CCeEEe-cchHHHHhccccHHHHHHHhhhhh--cCCchHHHHHHHHHh
Confidence 46674 599999999999999999 51 223333 4666666765422 12221111 234788899988899
Q ss_pred ChHHHHHHHhhhhhhhhhccCCCchhhhhhhccCCCCCCCCCCCCccccCCCCCCCCcccccccCcchhhhhhhcccccc
Q 015261 78 SSKALAQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTN 157 (410)
Q Consensus 78 s~~~l~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ee~~~~e~~~~~~~~~~~~ 157 (410)
+++.|..|+.. |
T Consensus 249 TeklL~~Hv~r--H------------------------------------------------------------------ 260 (467)
T KOG3608|consen 249 TEKLLKSHVVR--H------------------------------------------------------------------ 260 (467)
T ss_pred HHHHHHHHHHH--h------------------------------------------------------------------
Confidence 88888888752 1
Q ss_pred cCCCCCCCCCCccCCCCCCCCCCCCcccCCCCCCCCChhHHhhhhhhhhcCCCCCc----c-cccChHHHHHHHHhHhcC
Q 015261 158 LNVGSPADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDV----E-YLKDPKGLLTYLGLKVKR 232 (410)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~i~p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~----~-~lvd~~gLl~yl~~ki~~ 232 (410)
+.-++|..|+...+..++|..||+..|+-..|.. + .|+....|-+|+.-+-..
T Consensus 261 ----------------------vn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH~~~HS~~ 318 (467)
T KOG3608|consen 261 ----------------------VNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKHVQVHSKT 318 (467)
T ss_pred ----------------------hhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHHHHhcccc
Confidence 1234677777777777777777777777655544 2 346666666666544445
Q ss_pred Cccccc--cCCCCcccCCHHHHHHHHHhc
Q 015261 233 DFMCLY--CNDRCHPFNSLEAVRKHMEAK 259 (410)
Q Consensus 233 ~~~Cl~--C~~~gk~F~s~~alr~HM~~k 259 (410)
-|.|.. |. .+|.+.-.++.||+..
T Consensus 319 ~y~C~h~~C~---~s~r~~~q~~~H~~ev 344 (467)
T KOG3608|consen 319 VYQCEHPDCH---YSVRTYTQMRRHFLEV 344 (467)
T ss_pred ceecCCCCCc---HHHHHHHHHHHHHHHh
Confidence 689998 99 7789999999999974
No 15
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=98.15 E-value=6e-07 Score=95.56 Aligned_cols=124 Identities=23% Similarity=0.387 Sum_probs=93.9
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCChHHH
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL 82 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s~~~l 82 (410)
..||..|...+..-..|++|.|-- | + ..+..|.|..|.-+|..+..|
T Consensus 210 lltcpycdrgykrltslkeHikyr-h----------------------------e----kne~nfsC~lCsytFAyRtQL 256 (1007)
T KOG3623|consen 210 LLTCPYCDRGYKRLTSLKEHIKYR-H----------------------------E----KNEPNFSCMLCSYTFAYRTQL 256 (1007)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHH-H----------------------------h----hCCCCCcchhhhhhhhhHHHH
Confidence 368888888888888888888763 2 0 123478899999999999999
Q ss_pred HHHHhhhhhhhhhccCCCchhhhhhhccCCCCCCCCCCCCccccCCCCCCCCcccccccCcchhhhhhhcccccccCCCC
Q 015261 83 AQHLNSRSHIMRASQGTSNEEKEKVIIKPIPLRDVNKPPRKREANNEESEDSDDEWEEVGPDEVLVSEATNSLTNLNVGS 162 (410)
Q Consensus 83 ~~Hl~skkHk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ee~~~~e~~~~~~~~~~~~~~~~~ 162 (410)
..||.+.+--. . .++ .++.
T Consensus 257 Erhm~~hkpg~------d-----qa~-------------------------------sltq------------------- 275 (1007)
T KOG3623|consen 257 ERHMQLHKPGG------D-----QAI-------------------------------SLTQ------------------- 275 (1007)
T ss_pred HHHHHhhcCCC------c-----ccc-------------------------------cccc-------------------
Confidence 99997633211 0 000 0000
Q ss_pred CCCCCCccCCCCCCCCCCCCcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCC
Q 015261 163 PADDDLEEDDDDGAFEEFDPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDR 242 (410)
Q Consensus 163 ~~~~~~~~~~~~~~~~~i~p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~ 242 (410)
..-+.-++|..||+.|.-.-.|.+|.++|-| + ++|.|.-|+
T Consensus 276 --------------sa~lRKFKCtECgKAFKfKHHLKEHlRIHSG--------------------E---KPfeCpnCk-- 316 (1007)
T KOG3623|consen 276 --------------SALLRKFKCTECGKAFKFKHHLKEHLRIHSG--------------------E---KPFECPNCK-- 316 (1007)
T ss_pred --------------hhhhccccccccchhhhhHHHHHhhheeecC--------------------C---CCcCCcccc--
Confidence 0124678999999999999999999999766 3 499999999
Q ss_pred CcccCCHHHHHHHHHhcC
Q 015261 243 CHPFNSLEAVRKHMEAKR 260 (410)
Q Consensus 243 gk~F~s~~alr~HM~~k~ 260 (410)
|+|+...+.-.||-.|.
T Consensus 317 -KRFSHSGSySSHmSSKK 333 (1007)
T KOG3623|consen 317 -KRFSHSGSYSSHMSSKK 333 (1007)
T ss_pred -cccccCCcccccccccc
Confidence 99999999999999874
No 16
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=97.96 E-value=2.6e-06 Score=78.87 Aligned_cols=50 Identities=18% Similarity=0.444 Sum_probs=35.6
Q ss_pred cccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHHHHh
Q 015261 183 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA 258 (410)
Q Consensus 183 ~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~HM~~ 258 (410)
+-|.|||+.|.+.-+|..||++|.| ..+|+|..|+ |.|...-+|..|.+.
T Consensus 146 ~lct~cgkgfndtfdlkrh~rthtg-----------------------vrpykc~~c~---kaftqrcsleshl~k 195 (267)
T KOG3576|consen 146 HLCTFCGKGFNDTFDLKRHTRTHTG-----------------------VRPYKCSLCE---KAFTQRCSLESHLKK 195 (267)
T ss_pred HHHhhccCcccchhhhhhhhccccC-----------------------ccccchhhhh---HHHHhhccHHHHHHH
Confidence 3477777777777777777777666 3467777777 777777777777664
No 17
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=97.81 E-value=5e-06 Score=88.75 Aligned_cols=52 Identities=21% Similarity=0.427 Sum_probs=48.1
Q ss_pred CCcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHHHHh
Q 015261 181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA 258 (410)
Q Consensus 181 ~p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~HM~~ 258 (410)
.|++|.+|.+.|...-.|++||+.|-| + ++|+|..|+ |+|+...+--+||.-
T Consensus 921 RPyqC~iCkKAFKHKHHLtEHkRLHSG--------------------E---KPfQCdKCl---KRFSHSGSYSQHMNH 972 (1007)
T KOG3623|consen 921 RPYQCIICKKAFKHKHHLTEHKRLHSG--------------------E---KPFQCDKCL---KRFSHSGSYSQHMNH 972 (1007)
T ss_pred CCcccchhhHhhhhhhhhhhhhhhccC--------------------C---Ccchhhhhh---hhcccccchHhhhcc
Confidence 689999999999999999999999776 3 499999999 999999999999985
No 18
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=97.76 E-value=9.1e-06 Score=51.62 Aligned_cols=26 Identities=35% Similarity=0.732 Sum_probs=25.0
Q ss_pred ccccCcCCccCChHHHHHHHhhhhhh
Q 015261 67 YSCGLCGKGYRSSKALAQHLNSRSHI 92 (410)
Q Consensus 67 ~~C~~C~K~f~s~~~l~~Hl~skkHk 92 (410)
|.|.+|+|.|.+..++.+|++|++|+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCcccCCCCcCCHHHHHHHHccCCCC
Confidence 78999999999999999999999996
No 19
>PHA00733 hypothetical protein
Probab=97.69 E-value=8e-05 Score=65.12 Aligned_cols=52 Identities=19% Similarity=0.455 Sum_probs=45.3
Q ss_pred CCcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHHHHhcC
Q 015261 181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAKR 260 (410)
Q Consensus 181 ~p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~HM~~k~ 260 (410)
.|+.|..|++.|.+...+..|+..+ . .++.|..|+ +.|....+|..||..+.
T Consensus 72 kPy~C~~Cgk~Fss~s~L~~H~r~h-~------------------------~~~~C~~Cg---K~F~~~~sL~~H~~~~h 123 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVSLKQHIRYT-E------------------------HSKVCPVCG---KEFRNTDSTLDHVCKKH 123 (128)
T ss_pred CCccCCCCCCcCCCHHHHHHHHhcC-C------------------------cCccCCCCC---CccCCHHHHHHHHHHhc
Confidence 4678999999999999999999863 1 147999999 99999999999999763
No 20
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=97.64 E-value=2.6e-05 Score=48.32 Aligned_cols=25 Identities=40% Similarity=0.929 Sum_probs=23.9
Q ss_pred ccccCcCCccCChHHHHHHHhhhhh
Q 015261 67 YSCGLCGKGYRSSKALAQHLNSRSH 91 (410)
Q Consensus 67 ~~C~~C~K~f~s~~~l~~Hl~skkH 91 (410)
|.|.+|++.|.+..+|..|+++++|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 5799999999999999999999987
No 21
>PHA02768 hypothetical protein; Provisional
Probab=97.60 E-value=2.4e-05 Score=58.15 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=35.9
Q ss_pred CcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHH
Q 015261 182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEA 251 (410)
Q Consensus 182 p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~a 251 (410)
-+.|..||+.|+....|..||++|+. +++|..|+ |.|.....
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~k-------------------------~~kc~~C~---k~f~~~s~ 46 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHNT-------------------------NLKLSNCK---RISLRTGE 46 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcCC-------------------------cccCCccc---ceecccce
Confidence 47899999999999999999999752 67999999 88875543
No 22
>PHA02768 hypothetical protein; Provisional
Probab=97.57 E-value=3.3e-05 Score=57.39 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=35.8
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCChHH
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKA 81 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s~~~ 81 (410)
.|.|..||..|...+.|..||++.| ++|+|..|+|.|...+.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~-------------------------------------k~~kc~~C~k~f~~~s~ 46 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN-------------------------------------TNLKLSNCKRISLRTGE 46 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC-------------------------------------CcccCCcccceecccce
Confidence 5899999999999999999999932 25679999999886554
No 23
>PHA00732 hypothetical protein
Probab=97.39 E-value=0.00012 Score=58.79 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=39.6
Q ss_pred CcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHHHHhc
Q 015261 182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEAK 259 (410)
Q Consensus 182 p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~HM~~k 259 (410)
|+.|..|++.|.+...+..||..+|. ++.|..|+ +.|.+ +..|+.+|
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~-------------------------~~~C~~Cg---KsF~~---l~~H~~~~ 47 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT-------------------------LTKCPVCN---KSYRR---LNQHFYSQ 47 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC-------------------------CCccCCCC---CEeCC---hhhhhccc
Confidence 57899999999999999999986554 35799999 88884 77898766
No 24
>PHA00732 hypothetical protein
Probab=97.26 E-value=0.00018 Score=57.68 Aligned_cols=49 Identities=29% Similarity=0.485 Sum_probs=39.9
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCChHHH
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL 82 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s~~~l 82 (410)
||.|..|+..|.+...++.|++.. |. ++.|..|+|.|.+ +
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~-H~------------------------------------~~~C~~CgKsF~~---l 40 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRN-HT------------------------------------LTKCPVCNKSYRR---L 40 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcc-cC------------------------------------CCccCCCCCEeCC---h
Confidence 689999999999999999999853 31 2359999999984 6
Q ss_pred HHHHhhhhh
Q 015261 83 AQHLNSRSH 91 (410)
Q Consensus 83 ~~Hl~skkH 91 (410)
..|+++|..
T Consensus 41 ~~H~~~~~~ 49 (79)
T PHA00732 41 NQHFYSQYD 49 (79)
T ss_pred hhhhcccCC
Confidence 788877654
No 25
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=97.23 E-value=0.00012 Score=48.96 Aligned_cols=34 Identities=32% Similarity=0.642 Sum_probs=31.2
Q ss_pred CCCCcccccccccCChHHHhhhhhhccccchhhh
Q 015261 1 MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKR 34 (410)
Q Consensus 1 ~~~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKR 34 (410)
+++|.|..|++.|.+...++.|+++-.|+-|+++
T Consensus 1 ~~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~ 34 (35)
T smart00451 1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK 34 (35)
T ss_pred CcCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence 4689999999999999999999999999988865
No 26
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=97.18 E-value=0.00025 Score=47.30 Aligned_cols=30 Identities=20% Similarity=0.542 Sum_probs=27.5
Q ss_pred cccccCcCCccCChHHHHHHHhhhhhhhhh
Q 015261 66 TYSCGLCGKGYRSSKALAQHLNSRSHIMRA 95 (410)
Q Consensus 66 ~~~C~~C~K~f~s~~~l~~Hl~skkHk~~~ 95 (410)
.|.|.+|++.|.+..++.+|+++++|+.+.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~ 32 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNV 32 (35)
T ss_pred CeEccccCCccCCHHHHHHHHChHHHHHHH
Confidence 578999999999999999999999999854
No 27
>PHA00733 hypothetical protein
Probab=97.13 E-value=0.00053 Score=59.97 Aligned_cols=25 Identities=24% Similarity=0.686 Sum_probs=21.5
Q ss_pred cccccCcCCccCChHHHHHHHhhhh
Q 015261 66 TYSCGLCGKGYRSSKALAQHLNSRS 90 (410)
Q Consensus 66 ~~~C~~C~K~f~s~~~l~~Hl~skk 90 (410)
+|.|.+|+|.|.....|..|+..+.
T Consensus 99 ~~~C~~CgK~F~~~~sL~~H~~~~h 123 (128)
T PHA00733 99 SKVCPVCGKEFRNTDSTLDHVCKKH 123 (128)
T ss_pred CccCCCCCCccCCHHHHHHHHHHhc
Confidence 5789999999999999999987654
No 28
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=97.04 E-value=0.0009 Score=68.14 Aligned_cols=87 Identities=26% Similarity=0.474 Sum_probs=55.3
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhh--c-CCCCCcccccCcCCccCCh
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKN--K-NATPMTYSCGLCGKGYRSS 79 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~--~-~~~~~~~~C~~C~K~f~s~ 79 (410)
.|.|.-|++.|.-+.+|-.|-| ||.=------|+-||-... -..+ .+.++.. . +.....|.|.+|+|+|+.+
T Consensus 295 EYrCPEC~KVFsCPANLASHRR--WHKPR~eaa~a~~~P~k~~-~~~r--ae~~ea~rsg~dss~gi~~C~~C~KkFrRq 369 (500)
T KOG3993|consen 295 EYRCPECDKVFSCPANLASHRR--WHKPRPEAAKAGSPPPKQA-VETR--AEVQEAERSGDDSSSGIFSCHTCGKKFRRQ 369 (500)
T ss_pred eecCCcccccccCchhhhhhhc--ccCCchhhhhcCCCChhhh-hhhh--hhhhhccccCCcccCceeecHHhhhhhHHH
Confidence 4899999999999999999998 8932110111245553221 0111 1111111 1 2233479999999999999
Q ss_pred HHHHHHHhhhhhhhh
Q 015261 80 KALAQHLNSRSHIMR 94 (410)
Q Consensus 80 ~~l~~Hl~skkHk~~ 94 (410)
.-|+.|+.+.....+
T Consensus 370 AYLrKHqlthq~~~~ 384 (500)
T KOG3993|consen 370 AYLRKHQLTHQRAPL 384 (500)
T ss_pred HHHHHhHHhhhcccc
Confidence 999999877555443
No 29
>PHA00616 hypothetical protein
Probab=97.01 E-value=0.00024 Score=50.47 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=25.7
Q ss_pred CcccCCCCCCCCChhHHhhhhhhhhcC
Q 015261 182 PACCFMCDLPHDAIENCMVHMHKCHGF 208 (410)
Q Consensus 182 p~~ClfC~~~f~~~~~~~~HM~~~Hgf 208 (410)
|++|+.||..|.....+..||++|||-
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCC
Confidence 689999999999999999999999995
No 30
>PLN03086 PRLI-interacting factor K; Provisional
Probab=97.01 E-value=0.0012 Score=70.58 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=35.1
Q ss_pred CCcccCCCCCCCC----------ChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHH
Q 015261 181 DPACCFMCDLPHD----------AIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLE 250 (410)
Q Consensus 181 ~p~~ClfC~~~f~----------~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~ 250 (410)
.|..|.||+..+. ....+..|+.. +| .....|..|| +.|. +.
T Consensus 503 Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~-CG-----------------------~rt~~C~~Cg---k~Vr-lr 554 (567)
T PLN03086 503 RLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESI-CG-----------------------SRTAPCDSCG---RSVM-LK 554 (567)
T ss_pred CceeCCCCCCccccCccccchhhhhhhHHHHHHh-cC-----------------------CcceEccccC---Ceee-eh
Confidence 5678999999884 23466677766 34 3468999998 6554 55
Q ss_pred HHHHHHHh
Q 015261 251 AVRKHMEA 258 (410)
Q Consensus 251 alr~HM~~ 258 (410)
.+..|+..
T Consensus 555 dm~~H~~~ 562 (567)
T PLN03086 555 EMDIHQIA 562 (567)
T ss_pred hHHHHHHH
Confidence 67788764
No 31
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=96.75 E-value=0.00051 Score=43.48 Aligned_cols=27 Identities=30% Similarity=0.704 Sum_probs=24.4
Q ss_pred CCcccccccccCChHHHhhhhhhcccc
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHR 29 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHr 29 (410)
.|.|..|++.|.+...++.|++|.+|+
T Consensus 1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 1 QFYCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence 388999999999999999999998773
No 32
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.55 E-value=0.00075 Score=42.45 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=24.1
Q ss_pred CcccCCCCCCCCChhHHhhhhhhhhc
Q 015261 182 PACCFMCDLPHDAIENCMVHMHKCHG 207 (410)
Q Consensus 182 p~~ClfC~~~f~~~~~~~~HM~~~Hg 207 (410)
|+.|..|+..|.+...+..||+.||+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 57899999999999999999998875
No 33
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=96.55 E-value=0.0014 Score=39.61 Aligned_cols=22 Identities=36% Similarity=0.958 Sum_probs=20.7
Q ss_pred ccccCcCCccCChHHHHHHHhh
Q 015261 67 YSCGLCGKGYRSSKALAQHLNS 88 (410)
Q Consensus 67 ~~C~~C~K~f~s~~~l~~Hl~s 88 (410)
|.|+.|++.|.+...|..|++.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 6799999999999999999986
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=96.38 E-value=0.0014 Score=39.36 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=20.5
Q ss_pred cccCCCCCCCCChhHHhhhhhhhh
Q 015261 183 ACCFMCDLPHDAIENCMVHMHKCH 206 (410)
Q Consensus 183 ~~ClfC~~~f~~~~~~~~HM~~~H 206 (410)
+.|.+|+..|.+...+..||.++|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 479999999999999999999987
No 35
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=96.32 E-value=0.0019 Score=40.61 Aligned_cols=24 Identities=21% Similarity=0.580 Sum_probs=22.6
Q ss_pred CCcccccccccCChHHHhhhhhhc
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSD 26 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksd 26 (410)
+|+|..|+..|.+...++.|+++.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTT
T ss_pred CCCCCccCCccCChhHHHHHhHHh
Confidence 689999999999999999999984
No 36
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=96.16 E-value=0.0067 Score=44.82 Aligned_cols=51 Identities=25% Similarity=0.546 Sum_probs=39.0
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCChHHH
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL 82 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s~~~l 82 (410)
.|+|.+|+.. -+...|..|.... |+. ..+.+.|++|...+. ..|
T Consensus 2 ~f~CP~C~~~-~~~~~L~~H~~~~-H~~--------------------------------~~~~v~CPiC~~~~~--~~l 45 (54)
T PF05605_consen 2 SFTCPYCGKG-FSESSLVEHCEDE-HRS--------------------------------ESKNVVCPICSSRVT--DNL 45 (54)
T ss_pred CcCCCCCCCc-cCHHHHHHHHHhH-CcC--------------------------------CCCCccCCCchhhhh--hHH
Confidence 6999999995 4678999999997 531 123578999998655 378
Q ss_pred HHHHhhh
Q 015261 83 AQHLNSR 89 (410)
Q Consensus 83 ~~Hl~sk 89 (410)
..||.+.
T Consensus 46 ~~Hl~~~ 52 (54)
T PF05605_consen 46 IRHLNSQ 52 (54)
T ss_pred HHHHHHh
Confidence 8998764
No 37
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.15 E-value=0.0018 Score=39.91 Aligned_cols=25 Identities=28% Similarity=0.728 Sum_probs=22.5
Q ss_pred CcccccccccCChHHHhhhhhhccc
Q 015261 4 LTCNSCNREFNDDAEQKLHYKSDWH 28 (410)
Q Consensus 4 ftC~~C~~~F~~~~~qr~H~ksdwH 28 (410)
|.|..|++.|.+...++.|+++-.|
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence 6899999999999999999998433
No 38
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0031 Score=65.16 Aligned_cols=29 Identities=34% Similarity=0.637 Sum_probs=27.3
Q ss_pred ccccCcCCccCChHHHHHHHhhhhhhhhh
Q 015261 67 YSCGLCGKGYRSSKALAQHLNSRSHIMRA 95 (410)
Q Consensus 67 ~~C~~C~K~f~s~~~l~~Hl~skkHk~~~ 95 (410)
++|.+|.|+|++.+++.+|..||+|+.++
T Consensus 293 lyC~vCnKsFKseKq~kNHEnSKKHkenv 321 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENSKKHKENV 321 (508)
T ss_pred eEEeeccccccchHHHHhhHHHHHHHHHH
Confidence 77999999999999999999999999864
No 39
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=95.81 E-value=0.0029 Score=64.58 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=24.7
Q ss_pred CcccCCCCCCCCChhHHhhhhhhhhcC
Q 015261 182 PACCFMCDLPHDAIENCMVHMHKCHGF 208 (410)
Q Consensus 182 p~~ClfC~~~f~~~~~~~~HM~~~Hgf 208 (410)
.+.|-.|++.|....-|.+|..+||-.
T Consensus 356 i~~C~~C~KkFrRqAYLrKHqlthq~~ 382 (500)
T KOG3993|consen 356 IFSCHTCGKKFRRQAYLRKHQLTHQRA 382 (500)
T ss_pred eeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence 689999999999999999999998863
No 40
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=95.78 E-value=0.0046 Score=37.23 Aligned_cols=22 Identities=27% Similarity=0.762 Sum_probs=20.6
Q ss_pred ccccccCCCCcccCCHHHHHHHHHh
Q 015261 234 FMCLYCNDRCHPFNSLEAVRKHMEA 258 (410)
Q Consensus 234 ~~Cl~C~~~gk~F~s~~alr~HM~~ 258 (410)
|+|..|+ +.|.+...|+.||+.
T Consensus 1 y~C~~C~---~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICG---KSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTT---EEESSHHHHHHHHHH
T ss_pred CCCCCCC---CccCCHHHHHHHHhH
Confidence 5799999 999999999999986
No 41
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=95.75 E-value=0.0046 Score=36.96 Aligned_cols=23 Identities=22% Similarity=0.703 Sum_probs=19.6
Q ss_pred CcccccccccCChHHHhhhhhhc
Q 015261 4 LTCNSCNREFNDDAEQKLHYKSD 26 (410)
Q Consensus 4 ftC~~C~~~F~~~~~qr~H~ksd 26 (410)
|.|..|+..|.+...++.|+++.
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~ 23 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTH 23 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHH
T ss_pred CCCcCCCCcCCcHHHHHHHHHhh
Confidence 68999999999999999999984
No 42
>PHA00616 hypothetical protein
Probab=95.66 E-value=0.0027 Score=45.17 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=22.9
Q ss_pred CCcccccccccCChHHHhhhhhhc
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSD 26 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksd 26 (410)
||+|..||..|.....++.|+++.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~ 24 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSV 24 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHh
Confidence 699999999999999999999995
No 43
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=95.55 E-value=0.0074 Score=37.93 Aligned_cols=20 Identities=25% Similarity=0.743 Sum_probs=16.3
Q ss_pred hcCCCCCcccccCcCCccCC
Q 015261 59 NKNATPMTYSCGLCGKGYRS 78 (410)
Q Consensus 59 ~~~~~~~~~~C~~C~K~f~s 78 (410)
..+.++++|.|+.|+|.|.+
T Consensus 7 ~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 7 RTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHSSSSSEEESSSSEEESS
T ss_pred hhcCCCCCCCCCCCcCeeCc
Confidence 33567899999999999974
No 44
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=95.55 E-value=0.023 Score=41.95 Aligned_cols=50 Identities=14% Similarity=0.335 Sum_probs=38.5
Q ss_pred CcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHHHHh
Q 015261 182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHMEA 258 (410)
Q Consensus 182 p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~HM~~ 258 (410)
.+.|+||++ .-+...|+.|....|... .....|..|. ..+. ..+..||..
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~---------------------~~~v~CPiC~---~~~~--~~l~~Hl~~ 51 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSE---------------------SKNVVCPICS---SRVT--DNLIRHLNS 51 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCC---------------------CCCccCCCch---hhhh--hHHHHHHHH
Confidence 368999999 567889999999988731 1257999998 4433 488999975
No 45
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=95.41 E-value=0.0082 Score=37.72 Aligned_cols=26 Identities=31% Similarity=0.772 Sum_probs=20.6
Q ss_pred HHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCC
Q 015261 197 NCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNS 248 (410)
Q Consensus 197 ~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s 248 (410)
+|..||++|.| ..+|.|..|+ +.|.+
T Consensus 1 ~l~~H~~~H~~-----------------------~k~~~C~~C~---k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTG-----------------------EKPYKCPYCG---KSFSN 26 (26)
T ss_dssp HHHHHHHHHSS-----------------------SSSEEESSSS---EEESS
T ss_pred CHHHHhhhcCC-----------------------CCCCCCCCCc---CeeCc
Confidence 46789998766 3489999999 88864
No 46
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=95.16 E-value=0.0057 Score=52.41 Aligned_cols=81 Identities=22% Similarity=0.335 Sum_probs=50.3
Q ss_pred hHHHhhhhhhccccchhhhhhc--CCCCCCHHHHHHHHHHHHHhhhcC--CCCCcccccCcCCccCChHHHHHHHhhhhh
Q 015261 16 DAEQKLHYKSDWHRYNLKRKVA--GVPGVTEALFLARQAALAQEKNKN--ATPMTYSCGLCGKGYRSSKALAQHLNSRSH 91 (410)
Q Consensus 16 ~~~qr~H~ksdwHrYNlKRrva--~Lppvs~~~F~~k~~~l~~~~~~~--~~~~~~~C~~C~K~f~s~~~l~~Hl~skkH 91 (410)
.+.-+.|.+++-||-|.-|.-+ +|+-|..+.=..+ ..+....... -|--.|+|..|.+-|.+..+++.|.++|.|
T Consensus 4 ~s~r~k~~~~~~hr~~r~r~~~r~dLDqi~~dl~~~~-~kll~~~~D~dlPG~GqfyCi~CaRyFi~~~~l~~H~ktK~H 82 (129)
T KOG3408|consen 4 VSVRRKHHRSNRHRINRTRGRARKDLDQIDEDLETQK-GKLLNQEIDPDLPGGGQFYCIECARYFIDAKALKTHFKTKVH 82 (129)
T ss_pred cccccccccchhHHHHhhhccCccccccccccccccc-chhhcCcCCCCCCCCceeehhhhhhhhcchHHHHHHHhccHH
Confidence 3445667777778777554333 3444433322211 1111111111 133469999999999999999999999999
Q ss_pred hhhhcc
Q 015261 92 IMRASQ 97 (410)
Q Consensus 92 k~~~~~ 97 (410)
|.|+++
T Consensus 83 KrRvK~ 88 (129)
T KOG3408|consen 83 KRRVKE 88 (129)
T ss_pred HHHHHh
Confidence 997664
No 47
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=94.60 E-value=0.015 Score=35.51 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=19.7
Q ss_pred cccCCCCCCCCChhHHhhhhhhhhc
Q 015261 183 ACCFMCDLPHDAIENCMVHMHKCHG 207 (410)
Q Consensus 183 ~~ClfC~~~f~~~~~~~~HM~~~Hg 207 (410)
++|.+|+.... ...+..||..+|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 47999999888 8899999999986
No 48
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=94.28 E-value=0.01 Score=58.67 Aligned_cols=69 Identities=25% Similarity=0.507 Sum_probs=51.6
Q ss_pred CCCcccc--cccccCChHHHhhhhhhccccchhhhhhcCCC-CCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCC
Q 015261 2 PGLTCNS--CNREFNDDAEQKLHYKSDWHRYNLKRKVAGVP-GVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRS 78 (410)
Q Consensus 2 ~~ftC~~--C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lp-pvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s 78 (410)
-||.|.. |.+++.++..|+.||.--+- |- +...-| |+.-+.|.. ..++|.|.+|+|.|+.
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~lhGH~--~~--~~~~~p~p~~~~~F~~-------------~~KPYrCevC~KRYKN 410 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQ--NQ--KLHENPSPEKMNIFSA-------------KDKPYRCEVCDKRYKN 410 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhhcccc--Cc--ccCCCCCccccccccc-------------cCCceeccccchhhcc
Confidence 3799966 99999999999999997631 21 112223 666666632 3479999999999999
Q ss_pred hHHHHHHHh
Q 015261 79 SKALAQHLN 87 (410)
Q Consensus 79 ~~~l~~Hl~ 87 (410)
.+.|+-|..
T Consensus 411 lNGLKYHr~ 419 (423)
T COG5189 411 LNGLKYHRK 419 (423)
T ss_pred Cccceeccc
Confidence 999988864
No 49
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=94.07 E-value=0.059 Score=62.09 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=59.7
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCChHHH
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKAL 82 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s~~~l 82 (410)
.|.|..|+..|+.++.|-.|||+-+|-.+..+-.++.+- ..+++......+-.+|.|.+|.-++.+...|
T Consensus 465 t~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~----------~~~arg~~~~~~~~p~~C~~C~~stttng~L 534 (1406)
T KOG1146|consen 465 TLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNH----------PRLARGEVYRCPGKPYPCRACNYSTTTNGNL 534 (1406)
T ss_pred cccCCccchhhhhHHHhhhcccccccccchhHhHhcccc----------ccccccccccCCCCcccceeeeeeeecchHH
Confidence 478999999999999999999998776665333333220 0011111112234679999999999999999
Q ss_pred HHHHhhhhhhhh
Q 015261 83 AQHLNSRSHIMR 94 (410)
Q Consensus 83 ~~Hl~skkHk~~ 94 (410)
..||.|-+|+.+
T Consensus 535 sihlqS~~h~~~ 546 (1406)
T KOG1146|consen 535 SIHLQSDLHRNE 546 (1406)
T ss_pred HHHHHHHhhHHH
Confidence 999999999874
No 50
>PLN03086 PRLI-interacting factor K; Provisional
Probab=93.96 E-value=0.11 Score=56.06 Aligned_cols=73 Identities=14% Similarity=0.232 Sum_probs=51.5
Q ss_pred CcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhc-CCccccccCCCCcccC----------CHH
Q 015261 182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVK-RDFMCLYCNDRCHPFN----------SLE 250 (410)
Q Consensus 182 p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~-~~~~Cl~C~~~gk~F~----------s~~ 250 (410)
+..|.+|+..|. ...+..||..+|.-+.+.+........|..|+...-. .++.|.+|+ +.|. .+.
T Consensus 453 H~~C~~Cgk~f~-~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~---~~v~~g~~~~d~~d~~s 528 (567)
T PLN03086 453 HVHCEKCGQAFQ-QGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCG---DMVQAGGSAMDVRDRLR 528 (567)
T ss_pred CccCCCCCCccc-hHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCC---CccccCccccchhhhhh
Confidence 457999999996 6789999999885444434344566777777653322 378999999 6663 255
Q ss_pred HHHHHHHh
Q 015261 251 AVRKHMEA 258 (410)
Q Consensus 251 alr~HM~~ 258 (410)
.|..|+..
T Consensus 529 ~Lt~HE~~ 536 (567)
T PLN03086 529 GMSEHESI 536 (567)
T ss_pred hHHHHHHh
Confidence 88888876
No 51
>smart00355 ZnF_C2H2 zinc finger.
Probab=93.50 E-value=0.055 Score=32.45 Aligned_cols=21 Identities=43% Similarity=0.947 Sum_probs=19.6
Q ss_pred ccccCcCCccCChHHHHHHHh
Q 015261 67 YSCGLCGKGYRSSKALAQHLN 87 (410)
Q Consensus 67 ~~C~~C~K~f~s~~~l~~Hl~ 87 (410)
|.|..|++.|.+...+..|++
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH
Confidence 579999999999999999998
No 52
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=93.13 E-value=0.047 Score=46.89 Aligned_cols=37 Identities=35% Similarity=0.578 Sum_probs=33.4
Q ss_pred CCCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCC
Q 015261 2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGV 42 (410)
Q Consensus 2 ~~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppv 42 (410)
..|.|..|..-|.+...+..|+||--| ||||..|.++
T Consensus 56 GqfyCi~CaRyFi~~~~l~~H~ktK~H----KrRvK~l~~~ 92 (129)
T KOG3408|consen 56 GQFYCIECARYFIDAKALKTHFKTKVH----KRRVKELREV 92 (129)
T ss_pred ceeehhhhhhhhcchHHHHHHHhccHH----HHHHHhcccC
Confidence 468999999999999999999999988 8999998743
No 53
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=92.90 E-value=0.1 Score=53.04 Aligned_cols=79 Identities=18% Similarity=0.423 Sum_probs=54.4
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccccCcC---CccCCh
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCG---KGYRSS 79 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~---K~f~s~ 79 (410)
|--|++|...|.+-+.-+.||..+ |.+=| | .-++..-..-|..-... .....|.|..|+ +.|.+.
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~-HgffI-------P---dreYL~D~~GLl~YLge-KV~~~~~CL~CN~~~~~f~sl 233 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKE-HGFFI-------P---DREYLTDEKGLLKYLGE-KVGIGFICLFCNELGRPFSSL 233 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhc-cCCcC-------C---chHhhhchhHHHHHHHH-HhccCceEEEeccccCccccc
Confidence 346999999999999999999998 63322 3 22333222111110000 012468899998 999999
Q ss_pred HHHHHHHhhhhhhh
Q 015261 80 KALAQHLNSRSHIM 93 (410)
Q Consensus 80 ~~l~~Hl~skkHk~ 93 (410)
.+...||..|.|-.
T Consensus 234 eavr~HM~~K~HCk 247 (390)
T KOG2785|consen 234 EAVRAHMRDKGHCK 247 (390)
T ss_pred HHHHHHHhhccCcc
Confidence 99999999999976
No 54
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=0.16 Score=55.50 Aligned_cols=79 Identities=20% Similarity=0.388 Sum_probs=58.4
Q ss_pred CcccCCCCCCCCChhHHhhhhhhhhcCCCCCc-----cc------ccChHHHHHHHH-----hHhcCC-ccccccCCCCc
Q 015261 182 PACCFMCDLPHDAIENCMVHMHKCHGFFIPDV-----EY------LKDPKGLLTYLG-----LKVKRD-FMCLYCNDRCH 244 (410)
Q Consensus 182 p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~-----~~------lvd~~gLl~yl~-----~ki~~~-~~Cl~C~~~gk 244 (410)
-..|++| ..|.++..|..||...|.++.+.. ++ ++....|+.|+. ++...+ -.|.+|. .
T Consensus 115 ~~~~~~c-~~~~s~~~Lk~H~~~~H~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~gd~d~~s~rGhp~C~~C~---~ 190 (669)
T KOG2231|consen 115 KKECLHC-TEFKSVENLKNHMRDQHKLHLCSLCLQNLKIFINERKLYTRAELNLHLMFGDPDDESCRGHPLCKFCH---E 190 (669)
T ss_pred cCCCccc-cchhHHHHHHHHHHHhhhhhccccccccceeeeeeeehehHHHHHHHHhcCCCccccccCCccchhhh---h
Confidence 3468888 888899999999999999887543 22 356677777754 222334 5899999 8
Q ss_pred ccCCHHHHHHHHHh-cCCccc
Q 015261 245 PFNSLEAVRKHMEA-KRHCKI 264 (410)
Q Consensus 245 ~F~s~~alr~HM~~-k~HCki 264 (410)
.|-....|+.||+. +-+|.+
T Consensus 191 ~fld~~el~rH~~~~h~~chf 211 (669)
T KOG2231|consen 191 RFLDDDELYRHLRFDHEFCHF 211 (669)
T ss_pred hhccHHHHHHhhccceeheee
Confidence 89999999999985 445544
No 55
>smart00355 ZnF_C2H2 zinc finger.
Probab=91.80 E-value=0.17 Score=30.21 Aligned_cols=22 Identities=32% Similarity=0.729 Sum_probs=20.1
Q ss_pred ccccccCCCCcccCCHHHHHHHHHh
Q 015261 234 FMCLYCNDRCHPFNSLEAVRKHMEA 258 (410)
Q Consensus 234 ~~Cl~C~~~gk~F~s~~alr~HM~~ 258 (410)
+.|..|+ +.|.+...++.||+.
T Consensus 1 ~~C~~C~---~~f~~~~~l~~H~~~ 22 (26)
T smart00355 1 YRCPECG---KVFKSKSALKEHMRT 22 (26)
T ss_pred CCCCCCc---chhCCHHHHHHHHHH
Confidence 4799999 999999999999984
No 56
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=0.59 Score=51.16 Aligned_cols=69 Identities=20% Similarity=0.345 Sum_probs=52.1
Q ss_pred ccCCCCCCCCChhHHhhhhhhhhcCCC-CC-c----ccccChHHHHHHHHhHhcCCcccc--ccCCCCcccCCHHHHHHH
Q 015261 184 CCFMCDLPHDAIENCMVHMHKCHGFFI-PD-V----EYLKDPKGLLTYLGLKVKRDFMCL--YCNDRCHPFNSLEAVRKH 255 (410)
Q Consensus 184 ~ClfC~~~f~~~~~~~~HM~~~Hgf~i-p~-~----~~lvd~~gLl~yl~~ki~~~~~Cl--~C~~~gk~F~s~~alr~H 255 (410)
.|.||...|-...++..||+.+|=|-+ ++ . +|.-+-.+|-.|..+. .+.|- .|.. +.|...-.+..|
T Consensus 184 ~C~~C~~~fld~~el~rH~~~~h~~chfC~~~~~~neyy~~~~dLe~HfR~~---HflCE~~~C~~--~~f~~~~~~ei~ 258 (669)
T KOG2231|consen 184 LCKFCHERFLDDDELYRHLRFDHEFCHFCDYKTGQNEYYNDYDDLEEHFRKG---HFLCEEEFCRT--KKFYVAFELEIE 258 (669)
T ss_pred cchhhhhhhccHHHHHHhhccceeheeecCcccccchhcccchHHHHHhhhc---Ccccccccccc--ceeeehhHHHHH
Confidence 799999999999999999999887644 32 1 4556778888876654 57898 8874 567666566666
Q ss_pred HH
Q 015261 256 ME 257 (410)
Q Consensus 256 M~ 257 (410)
|+
T Consensus 259 lk 260 (669)
T KOG2231|consen 259 LK 260 (669)
T ss_pred HH
Confidence 66
No 57
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=89.64 E-value=0.16 Score=37.33 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=21.0
Q ss_pred CCcccCCCCCCCCChhHHhhhhhhhhc
Q 015261 181 DPACCFMCDLPHDAIENCMVHMHKCHG 207 (410)
Q Consensus 181 ~p~~ClfC~~~f~~~~~~~~HM~~~Hg 207 (410)
.|..|..|+..+++..+|..||..+|+
T Consensus 23 ~PatCP~C~a~~~~srnLrRHle~~H~ 49 (54)
T PF09237_consen 23 QPATCPICGAVIRQSRNLRRHLEIRHF 49 (54)
T ss_dssp --EE-TTT--EESSHHHHHHHHHHHTT
T ss_pred CCCCCCcchhhccchhhHHHHHHHHhc
Confidence 678999999999999999999999887
No 58
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=84.85 E-value=0.38 Score=55.74 Aligned_cols=80 Identities=21% Similarity=0.255 Sum_probs=51.8
Q ss_pred CCCcccCCCCCCCCChhHHhhhhhhhhc-CCC----------------------CCcccccChHHHHHHHHhHhcCCccc
Q 015261 180 FDPACCFMCDLPHDAIENCMVHMHKCHG-FFI----------------------PDVEYLKDPKGLLTYLGLKVKRDFMC 236 (410)
Q Consensus 180 i~p~~ClfC~~~f~~~~~~~~HM~~~Hg-f~i----------------------p~~~~lvd~~gLl~yl~~ki~~~~~C 236 (410)
..|+.|.-|...+++..+|..||..--. ..+ |+..-+.+..|.-. -+..-...|
T Consensus 516 ~~p~~C~~C~~stttng~LsihlqS~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~---pktkP~~~C 592 (1406)
T KOG1146|consen 516 GKPYPCRACNYSTTTNGNLSIHLQSDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSG---PKTKPSWRC 592 (1406)
T ss_pred CCcccceeeeeeeecchHHHHHHHHHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCC---CCCCCCcch
Confidence 4789999999999999999999986322 110 00001111111111 122234689
Q ss_pred cccCCCCcccCCHHHHHHHHHhcCCcccC
Q 015261 237 LYCNDRCHPFNSLEAVRKHMEAKRHCKIH 265 (410)
Q Consensus 237 l~C~~~gk~F~s~~alr~HM~~k~HCki~ 265 (410)
..|++ .-.-..+|+.||....|...|
T Consensus 593 ~vc~y---etniarnlrihmtss~~s~~p 618 (1406)
T KOG1146|consen 593 EVCSY---ETNIARNLRIHMTASPSSSPP 618 (1406)
T ss_pred hhhcc---hhhhhhccccccccCCCCCCh
Confidence 99984 446788999999999998885
No 59
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.13 E-value=0.6 Score=43.88 Aligned_cols=63 Identities=25% Similarity=0.546 Sum_probs=46.2
Q ss_pred cccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccc--cCcCCccCChHHH
Q 015261 5 TCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSC--GLCGKGYRSSKAL 82 (410)
Q Consensus 5 tC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C--~~C~K~f~s~~~l 82 (410)
.|..|...|++.-+|-.|+- +||- ..|..+++ .|..-|.| .-|.-+|++..+-
T Consensus 108 sCs~C~r~~Pt~hLLd~HI~-E~HD---------------s~Fqa~ve---------RG~dMy~ClvEgCt~KFkT~r~R 162 (253)
T KOG4173|consen 108 SCSFCKRAFPTGHLLDAHIL-EWHD---------------SLFQALVE---------RGQDMYQCLVEGCTEKFKTSRDR 162 (253)
T ss_pred hhHHHHHhCCchhhhhHHHH-HHHH---------------HHHHHHHH---------cCccHHHHHHHhhhhhhhhhhhh
Confidence 69999999999999999985 6881 13444333 14456788 4588899999999
Q ss_pred HHHHhhhhhhh
Q 015261 83 AQHLNSRSHIM 93 (410)
Q Consensus 83 ~~Hl~skkHk~ 93 (410)
+.||.. +||.
T Consensus 163 kdH~I~-~Hk~ 172 (253)
T KOG4173|consen 163 KDHMIR-MHKY 172 (253)
T ss_pred hhHHHH-hccC
Confidence 999965 4554
No 60
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=83.69 E-value=2 Score=36.14 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=25.0
Q ss_pred CCccc----CCCCCCCCChhHHhhhhhhhhc
Q 015261 181 DPACC----FMCDLPHDAIENCMVHMHKCHG 207 (410)
Q Consensus 181 ~p~~C----lfC~~~f~~~~~~~~HM~~~Hg 207 (410)
+-+.| ..|++...+...+.+|++.+||
T Consensus 79 ~G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 79 DGYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CCeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 55789 9999999999999999999997
No 61
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.74 E-value=0.46 Score=47.79 Aligned_cols=79 Identities=20% Similarity=0.393 Sum_probs=55.4
Q ss_pred cccCC--CCCCCCChhHHhhhhhhhhcCCCCCc-----c------cccChHHHHHHHH--hHh-c--CCccccccCCCCc
Q 015261 183 ACCFM--CDLPHDAIENCMVHMHKCHGFFIPDV-----E------YLKDPKGLLTYLG--LKV-K--RDFMCLYCNDRCH 244 (410)
Q Consensus 183 ~~Clf--C~~~f~~~~~~~~HM~~~Hgf~ip~~-----~------~lvd~~gLl~yl~--~ki-~--~~~~Cl~C~~~gk 244 (410)
+.|+. |......+-++..|....|+++|++. . .|....||-+|-. ..- + ...+|.+|+ .
T Consensus 152 F~CP~skc~~~C~~~k~lk~H~K~~H~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~---~ 228 (493)
T COG5236 152 FKCPKSKCHRRCGSLKELKKHYKAQHGFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCK---I 228 (493)
T ss_pred hcCCchhhhhhhhhHHHHHHHHHhhcCcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhcc---c
Confidence 44543 55566679999999999999999865 1 1345667776621 110 0 124899999 8
Q ss_pred ccCCHHHHHHHHHhcC-Cccc
Q 015261 245 PFNSLEAVRKHMEAKR-HCKI 264 (410)
Q Consensus 245 ~F~s~~alr~HM~~k~-HCki 264 (410)
.|.+-..|..||+.++ -|-|
T Consensus 229 ~FYdDDEL~~HcR~~HE~ChI 249 (493)
T COG5236 229 YFYDDDELRRHCRLRHEACHI 249 (493)
T ss_pred eecChHHHHHHHHhhhhhhhh
Confidence 9999999999999864 4433
No 62
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=82.38 E-value=1.3 Score=44.74 Aligned_cols=72 Identities=19% Similarity=0.428 Sum_probs=56.5
Q ss_pred ccCCCCCCCCChhHHhhhhhhhhc-CCCCCc------ccccChHHHHHHHHhHhcCCccccc--cC-CCCcccCCHHHHH
Q 015261 184 CCFMCDLPHDAIENCMVHMHKCHG-FFIPDV------EYLKDPKGLLTYLGLKVKRDFMCLY--CN-DRCHPFNSLEAVR 253 (410)
Q Consensus 184 ~ClfC~~~f~~~~~~~~HM~~~Hg-f~ip~~------~~lvd~~gLl~yl~~ki~~~~~Cl~--C~-~~gk~F~s~~alr 253 (410)
.|.||...|-+-.+|..||+..|- -+|+|. .|+.+...|-.|...- .|.|.+ |- .+..+|...-.|+
T Consensus 222 ~C~FC~~~FYdDDEL~~HcR~~HE~ChICD~v~p~~~QYFK~Y~~Le~HF~~~---hy~ct~qtc~~~k~~vf~~~~el~ 298 (493)
T COG5236 222 LCIFCKIYFYDDDELRRHCRLRHEACHICDMVGPIRYQYFKSYEDLEAHFRNA---HYCCTFQTCRVGKCYVFPYHTELL 298 (493)
T ss_pred hhhhccceecChHHHHHHHHhhhhhhhhhhccCccchhhhhCHHHHHHHhhcC---ceEEEEEEEecCcEEEeccHHHHH
Confidence 799999999999999999999884 566655 7899999999986532 456654 42 2336899999999
Q ss_pred HHHHh
Q 015261 254 KHMEA 258 (410)
Q Consensus 254 ~HM~~ 258 (410)
.|...
T Consensus 299 ~h~~~ 303 (493)
T COG5236 299 EHLTR 303 (493)
T ss_pred HHHHH
Confidence 99875
No 63
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=81.47 E-value=0.52 Score=39.71 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=30.5
Q ss_pred CCCcccccCcCCccCChHHHHHHHhhhhhhhhhcc
Q 015261 63 TPMTYSCGLCGKGYRSSKALAQHLNSRSHIMRASQ 97 (410)
Q Consensus 63 ~~~~~~C~~C~K~f~s~~~l~~Hl~skkHk~~~~~ 97 (410)
+.-.++|..|.+-|-+..+|..|.++|-|+.+++.
T Consensus 52 GlGqhYCieCaryf~t~~aL~~HkkgkvHkRR~Ke 86 (126)
T COG5112 52 GLGQHYCIECARYFITEKALMEHKKGKVHKRRAKE 86 (126)
T ss_pred CCceeeeehhHHHHHHHHHHHHHhccchhHHHHHH
Confidence 33468899999999999999999999999987654
No 64
>PLN02748 tRNA dimethylallyltransferase
Probab=81.38 E-value=0.93 Score=48.03 Aligned_cols=32 Identities=31% Similarity=0.598 Sum_probs=28.7
Q ss_pred CcccccCcCC-ccCChHHHHHHHhhhhhhhhhc
Q 015261 65 MTYSCGLCGK-GYRSSKALAQHLNSRSHIMRAS 96 (410)
Q Consensus 65 ~~~~C~~C~K-~f~s~~~l~~Hl~skkHk~~~~ 96 (410)
+.|.|.+|++ .+.....+..|++|++|+.+.+
T Consensus 417 ~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~ 449 (468)
T PLN02748 417 TQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQ 449 (468)
T ss_pred ccccccCCCCcccCCHHHHHHHhcchHHHHHHh
Confidence 5688999997 8999999999999999998644
No 65
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=80.73 E-value=1.6 Score=32.58 Aligned_cols=29 Identities=24% Similarity=0.598 Sum_probs=22.8
Q ss_pred hHHHHHHHHhHhcCCccccccCCCCcccCCHHHHH
Q 015261 219 PKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVR 253 (410)
Q Consensus 219 ~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr 253 (410)
+..|+.||+.+ .+-|.||+ -.|.+.+.|.
T Consensus 16 L~~l~~YLR~~---~~YC~~Cg---~~Y~d~~dL~ 44 (55)
T PF13821_consen 16 LDKLLSYLREE---HNYCFWCG---TKYDDEEDLE 44 (55)
T ss_pred HHHHHHHHHhh---CceeeeeC---CccCCHHHHH
Confidence 45678888766 57899999 7888887765
No 66
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=80.45 E-value=1.2 Score=30.69 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=16.8
Q ss_pred cccccCcCCcc-CCh-HHHHHHHhhhhhhhhh
Q 015261 66 TYSCGLCGKGY-RSS-KALAQHLNSRSHIMRA 95 (410)
Q Consensus 66 ~~~C~~C~K~f-~s~-~~l~~Hl~skkHk~~~ 95 (410)
.|.|..|++.| .+. ..-++|.+..+|+.+.
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv 34 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENV 34 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT--THHHHHH
T ss_pred CeecccccceecCCChHHHHHhhccHHHHHHH
Confidence 47899999999 333 5569999999999854
No 67
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=79.64 E-value=1.4 Score=27.36 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=18.5
Q ss_pred CCcccccccccCChHHHhhhhhh
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKS 25 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ks 25 (410)
...|..|+..| .++.+..|.+.
T Consensus 2 l~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 2 LVPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CCcCCCCCCEE-CHHHHHHHHHh
Confidence 36899999999 78999999763
No 68
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=78.05 E-value=1.8 Score=26.09 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=16.4
Q ss_pred ccccCcCCccCChHHHHHHHhhh
Q 015261 67 YSCGLCGKGYRSSKALAQHLNSR 89 (410)
Q Consensus 67 ~~C~~C~K~f~s~~~l~~Hl~sk 89 (410)
|.|..|..... ...|.+|++.+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~ 22 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRH 22 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhh
Confidence 67999997776 77899998764
No 69
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=76.17 E-value=2 Score=31.59 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=18.9
Q ss_pred CCccccccCCCCcccCCHHHHHHHHHhcC
Q 015261 232 RDFMCLYCNDRCHPFNSLEAVRKHMEAKR 260 (410)
Q Consensus 232 ~~~~Cl~C~~~gk~F~s~~alr~HM~~k~ 260 (410)
.+..|..|+ ..+++...|+.||...+
T Consensus 23 ~PatCP~C~---a~~~~srnLrRHle~~H 48 (54)
T PF09237_consen 23 QPATCPICG---AVIRQSRNLRRHLEIRH 48 (54)
T ss_dssp --EE-TTT-----EESSHHHHHHHHHHHT
T ss_pred CCCCCCcch---hhccchhhHHHHHHHHh
Confidence 378999999 99999999999997643
No 70
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=75.84 E-value=2.5 Score=26.24 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=18.0
Q ss_pred ccccccCCCCcccCCHHHHHHHHHh
Q 015261 234 FMCLYCNDRCHPFNSLEAVRKHMEA 258 (410)
Q Consensus 234 ~~Cl~C~~~gk~F~s~~alr~HM~~ 258 (410)
..|..|| +.| ..++|..|+..
T Consensus 3 ~~C~~Cg---R~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICG---RKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCC---CEE-CHHHHHHHHHh
Confidence 4799999 999 88999999863
No 71
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=75.55 E-value=0.98 Score=38.08 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=33.2
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcCCC--CCCHH
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVP--GVTEA 45 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lp--pvs~~ 45 (410)
.|.|+.|...|.+...|..|.|..-| |||+.+|. |.|.+
T Consensus 55 qhYCieCaryf~t~~aL~~HkkgkvH----kRR~KelRevpytQe 95 (126)
T COG5112 55 QHYCIECARYFITEKALMEHKKGKVH----KRRAKELREVPYTQE 95 (126)
T ss_pred eeeeehhHHHHHHHHHHHHHhccchh----HHHHHHHhcCcchhH
Confidence 47899999999999999999999888 78888876 44443
No 72
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=75.48 E-value=1.5 Score=32.01 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=21.8
Q ss_pred CcccccCcCCccCChHHHHHHHhhhhhhh
Q 015261 65 MTYSCGLCGKGYRSSKALAQHLNSRSHIM 93 (410)
Q Consensus 65 ~~~~C~~C~K~f~s~~~l~~Hl~skkHk~ 93 (410)
++-+|.+|.-.|.. |..|+.|++|..
T Consensus 4 k~GYCE~Cr~kfd~---l~~Hi~s~~Hr~ 29 (49)
T smart00586 4 KPGYCENCREKYDD---LETHLLSEKHRR 29 (49)
T ss_pred CCcccccHhHHHhh---HHHHhccHHHHH
Confidence 45569999988874 688999999987
No 73
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=75.06 E-value=0.71 Score=46.04 Aligned_cols=70 Identities=16% Similarity=0.348 Sum_probs=46.7
Q ss_pred CCcccCC--CCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHHHH
Q 015261 181 DPACCFM--CDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHME 257 (410)
Q Consensus 181 ~p~~Clf--C~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~HM~ 257 (410)
.|+.|.. |++.+++..-|.=||..=|--.| .----+++..-.|..+ .++|.|.+|+ |+++++..|+-|..
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~--~~~~p~p~~~~~F~~~--~KPYrCevC~---KRYKNlNGLKYHr~ 419 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQK--LHENPSPEKMNIFSAK--DKPYRCEVCD---KRYKNLNGLKYHRK 419 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhhccccCcc--cCCCCCcccccccccc--CCceeccccc---hhhccCccceeccc
Confidence 7899976 99999999999999984442111 1000011111112111 2599999999 99999999998864
No 74
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=74.41 E-value=1.7 Score=42.05 Aligned_cols=49 Identities=27% Similarity=0.505 Sum_probs=37.4
Q ss_pred CCCCcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCChH
Q 015261 1 MPGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSK 80 (410)
Q Consensus 1 ~~~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s~~ 80 (410)
|-.|||+.||-...-+..=+ ||-.= | + ..|.|.-|++.|-. .
T Consensus 1 MV~FtCnvCgEsvKKp~vek-H~srC-r----------------------------------n-~~fSCIDC~k~F~~-~ 42 (276)
T KOG2186|consen 1 MVFFTCNVCGESVKKPQVEK-HMSRC-R----------------------------------N-AYFSCIDCGKTFER-V 42 (276)
T ss_pred CeEEehhhhhhhccccchHH-HHHhc-c----------------------------------C-CeeEEeeccccccc-c
Confidence 66799999999888665555 55431 1 1 46899999999998 6
Q ss_pred HHHHHHh
Q 015261 81 ALAQHLN 87 (410)
Q Consensus 81 ~l~~Hl~ 87 (410)
.|.+|..
T Consensus 43 sYknH~k 49 (276)
T KOG2186|consen 43 SYKNHTK 49 (276)
T ss_pred hhhhhhh
Confidence 7999976
No 75
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=72.72 E-value=4.5 Score=41.06 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=29.9
Q ss_pred CCCcccccccccCChHHHhhhhhhccccchhhhhh
Q 015261 2 PGLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKV 36 (410)
Q Consensus 2 ~~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrv 36 (410)
+.+-|..|+.-|..+..+..|.+.--|.=|.+++-
T Consensus 237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~ 271 (470)
T COG5188 237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKE 271 (470)
T ss_pred cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhh
Confidence 45789999999999999999999988877766543
No 76
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=72.67 E-value=1.9 Score=29.70 Aligned_cols=34 Identities=32% Similarity=0.591 Sum_probs=18.4
Q ss_pred CCCCccccccccc-CCh-HHHhhhhhhccccchhhh
Q 015261 1 MPGLTCNSCNREF-NDD-AEQKLHYKSDWHRYNLKR 34 (410)
Q Consensus 1 ~~~ftC~~C~~~F-~~~-~~qr~H~ksdwHrYNlKR 34 (410)
|+.|-|..|.+-| .+. ..-+.|-+.-=|+-|+++
T Consensus 1 m~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~ 36 (38)
T PF06220_consen 1 MPRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR 36 (38)
T ss_dssp --S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred CcCeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence 7889999999999 344 566999998778877765
No 77
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=72.32 E-value=1.8 Score=32.34 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=25.5
Q ss_pred CCCCcccccCcCCccCChHHHHHHHhhhh
Q 015261 62 ATPMTYSCGLCGKGYRSSKALAQHLNSRS 90 (410)
Q Consensus 62 ~~~~~~~C~~C~K~f~s~~~l~~Hl~skk 90 (410)
.++..+.|+-|++-|+.++.|..|+++.+
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhhHHh
Confidence 47788999999999999999999998543
No 78
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=71.99 E-value=1.2 Score=42.90 Aligned_cols=45 Identities=33% Similarity=0.581 Sum_probs=35.9
Q ss_pred cccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHHHHHHHHHhhhcCCCCCcccccCcCCccCChHHHHH
Q 015261 5 TCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLARQAALAQEKNKNATPMTYSCGLCGKGYRSSKALAQ 84 (410)
Q Consensus 5 tC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~k~~~l~~~~~~~~~~~~~~C~~C~K~f~s~~~l~~ 84 (410)
.|-+|+..|.+...|.+|.|.- .|+|.||-|...+--.|.-
T Consensus 12 wcwycnrefddekiliqhqkak---------------------------------------hfkchichkkl~sgpglsi 52 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKAK---------------------------------------HFKCHICHKKLFSGPGLSI 52 (341)
T ss_pred eeeecccccchhhhhhhhhhhc---------------------------------------cceeeeehhhhccCCCcee
Confidence 5999999999988888888863 4789999888777666777
Q ss_pred HHhh
Q 015261 85 HLNS 88 (410)
Q Consensus 85 Hl~s 88 (410)
|...
T Consensus 53 hcmq 56 (341)
T KOG2893|consen 53 HCMQ 56 (341)
T ss_pred ehhh
Confidence 7544
No 79
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=70.90 E-value=3.5 Score=34.61 Aligned_cols=70 Identities=19% Similarity=0.355 Sum_probs=45.8
Q ss_pred CCcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHH------------------------hHhcCCccc
Q 015261 181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLG------------------------LKVKRDFMC 236 (410)
Q Consensus 181 ~p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~------------------------~ki~~~~~C 236 (410)
....|..|.....- +++..|++..|.-.-.. ...+|..++. ..+..|+.|
T Consensus 10 ~vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~-----~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C 83 (109)
T PF12013_consen 10 RVLICRQCQYAVQP-SEVESHLRKRHHILKSQ-----ERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRC 83 (109)
T ss_pred CEEEeCCCCcccCc-hHHHHHHHHhcccccHH-----HHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeee
Confidence 45679999987765 88899999666422111 0111111111 123368999
Q ss_pred ----cccCCCCcccCCHHHHHHHHHhc
Q 015261 237 ----LYCNDRCHPFNSLEAVRKHMEAK 259 (410)
Q Consensus 237 ----l~C~~~gk~F~s~~alr~HM~~k 259 (410)
..|+ ..+.+...++.|++.+
T Consensus 84 ~~~~~~C~---y~~~~~~~m~~H~~~~ 107 (109)
T PF12013_consen 84 QCDPPHCG---YITRSKKTMRKHWRKE 107 (109)
T ss_pred ecCCCCCC---cEeccHHHHHHHHHHh
Confidence 9999 6669999999999975
No 80
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.54 E-value=2 Score=40.48 Aligned_cols=64 Identities=20% Similarity=0.354 Sum_probs=49.4
Q ss_pred CCcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcC---Cccccc--cCCCCcccCCHHHHHHH
Q 015261 181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKR---DFMCLY--CNDRCHPFNSLEAVRKH 255 (410)
Q Consensus 181 ~p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~---~~~Cl~--C~~~gk~F~s~~alr~H 255 (410)
....|.||.+.|++---|-.|....|.- |...++.. -|.|+. |+ -.|++..+-..|
T Consensus 105 h~~sCs~C~r~~Pt~hLLd~HI~E~HDs----------------~Fqa~veRG~dMy~ClvEgCt---~KFkT~r~RkdH 165 (253)
T KOG4173|consen 105 HGNSCSFCKRAFPTGHLLDAHILEWHDS----------------LFQALVERGQDMYQCLVEGCT---EKFKTSRDRKDH 165 (253)
T ss_pred ccchhHHHHHhCCchhhhhHHHHHHHHH----------------HHHHHHHcCccHHHHHHHhhh---hhhhhhhhhhhH
Confidence 3458999999999999999999988862 22223322 478987 88 789999999999
Q ss_pred HHhcCCcccC
Q 015261 256 MEAKRHCKIH 265 (410)
Q Consensus 256 M~~k~HCki~ 265 (410)
|+.++ |+|
T Consensus 166 ~I~~H--k~P 173 (253)
T KOG4173|consen 166 MIRMH--KYP 173 (253)
T ss_pred HHHhc--cCC
Confidence 99987 444
No 81
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=68.96 E-value=1.8 Score=38.16 Aligned_cols=25 Identities=20% Similarity=0.486 Sum_probs=16.8
Q ss_pred CcccCCCCCCCCChhHHhhhhhhhhcCC
Q 015261 182 PACCFMCDLPHDAIENCMVHMHKCHGFF 209 (410)
Q Consensus 182 p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ 209 (410)
-..|+.||+.|.++ ..|...|||..
T Consensus 72 ~i~clecGk~~k~L---krHL~~~~glt 96 (132)
T PF05443_consen 72 YIICLECGKKFKTL---KRHLRTHHGLT 96 (132)
T ss_dssp -EE-TBT--EESBH---HHHHHHTT-S-
T ss_pred eeEEccCCcccchH---HHHHHHccCCC
Confidence 35799999999877 89999999953
No 82
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=65.96 E-value=4.1 Score=29.72 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=21.7
Q ss_pred cccccCcCCccCChHHHHHHHhhhhhhhh
Q 015261 66 TYSCGLCGKGYRSSKALAQHLNSRSHIMR 94 (410)
Q Consensus 66 ~~~C~~C~K~f~s~~~l~~Hl~skkHk~~ 94 (410)
+-.|..|.-.|.+ |..|+.|.+|+.-
T Consensus 5 ~GYCE~C~~ky~~---l~~Hi~s~~Hr~F 30 (49)
T PF07535_consen 5 PGYCENCRVKYDD---LEEHIQSEKHRKF 30 (49)
T ss_pred CccCccccchhhh---HHHHhCCHHHHHH
Confidence 3459999988875 6899999999873
No 83
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=58.42 E-value=8.2 Score=24.21 Aligned_cols=19 Identities=21% Similarity=0.599 Sum_probs=15.9
Q ss_pred cccCcCCccCChHHHHHHHh
Q 015261 68 SCGLCGKGYRSSKALAQHLN 87 (410)
Q Consensus 68 ~C~~C~K~f~s~~~l~~Hl~ 87 (410)
.|++|++.+ +...+..|+.
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 599999998 6677888886
No 84
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=58.25 E-value=2.3 Score=40.97 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.5
Q ss_pred ccCCCCCCCCChhHHhhhhhhhh
Q 015261 184 CCFMCDLPHDAIENCMVHMHKCH 206 (410)
Q Consensus 184 ~ClfC~~~f~~~~~~~~HM~~~H 206 (410)
=|-+|++.|.+-.-|++|....|
T Consensus 12 wcwycnrefddekiliqhqkakh 34 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKAKH 34 (341)
T ss_pred eeeecccccchhhhhhhhhhhcc
Confidence 49999999999999999998754
No 85
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=56.14 E-value=4.9 Score=40.76 Aligned_cols=31 Identities=26% Similarity=0.561 Sum_probs=27.5
Q ss_pred cccccCcCCccCChHHHHHHHhhhhhhhhhc
Q 015261 66 TYSCGLCGKGYRSSKALAQHLNSRSHIMRAS 96 (410)
Q Consensus 66 ~~~C~~C~K~f~s~~~l~~Hl~skkHk~~~~ 96 (410)
.++|..|++-|+..+.+..|+.+|.|.....
T Consensus 238 ~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~ 268 (470)
T COG5188 238 KVYCVKCGREFSRSKVFEYHLEGKRHCKEGQ 268 (470)
T ss_pred ceeeHhhhhHhhhhHHHHHHHhhhhhhhhhh
Confidence 4779999999999999999999999987433
No 86
>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]
Probab=55.18 E-value=6.4 Score=36.07 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=27.7
Q ss_pred CcccccCcCCccCChHHHHHHHhhhhhhhh
Q 015261 65 MTYSCGLCGKGYRSSKALAQHLNSRSHIMR 94 (410)
Q Consensus 65 ~~~~C~~C~K~f~s~~~l~~Hl~skkHk~~ 94 (410)
..|+|.||.=.|...-.|..|++-|+|..+
T Consensus 74 ~GyyCdVCdcvvKDSinflDHiNgKkHqrn 103 (193)
T KOG4727|consen 74 GGYYCDVCDCVVKDSINFLDHINGKKHQRN 103 (193)
T ss_pred CceeeeecceeehhhHHHHHHhccHHHHHH
Confidence 469999999999999999999999999875
No 87
>PRK04860 hypothetical protein; Provisional
Probab=52.98 E-value=7.7 Score=35.25 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=29.0
Q ss_pred CCcccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCC
Q 015261 181 DPACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNS 248 (410)
Q Consensus 181 ~p~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s 248 (410)
-+|.|. |+. .......|++++-| ..+|.|-.|+ +.|.-
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~ri~~g-----------------------~~~YrC~~C~---~~l~~ 155 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHNRVVRG-----------------------EAVYRCRRCG---ETLVF 155 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHHHHhcC-----------------------CccEECCCCC---ceeEE
Confidence 478998 998 66677889998765 3479999999 66543
No 88
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=52.86 E-value=9.4 Score=33.66 Aligned_cols=39 Identities=21% Similarity=0.573 Sum_probs=25.3
Q ss_pred CccccccCCCCcccCCHHHHHHHHHhc-CCcccCCCCCCchHHHhhhhhcCccCcCc
Q 015261 233 DFMCLYCNDRCHPFNSLEAVRKHMEAK-RHCKIHFGDGDDEEEAELEEFYDYSSSYM 288 (410)
Q Consensus 233 ~~~Cl~C~~~gk~F~s~~alr~HM~~k-~HCki~ye~~~~ee~~E~~dFYDFs~sy~ 288 (410)
.-+|+.|| |.|.++ +.|.+.+ | | ...||-.=|.+.+.||
T Consensus 72 ~i~clecG---k~~k~L---krHL~~~~g---l--------tp~eYR~kwGlp~dyp 111 (132)
T PF05443_consen 72 YIICLECG---KKFKTL---KRHLRTHHG---L--------TPEEYRAKWGLPKDYP 111 (132)
T ss_dssp -EE-TBT-----EESBH---HHHHHHTT----S---------HHHHHHHTT-GGG--
T ss_pred eeEEccCC---cccchH---HHHHHHccC---C--------CHHHHHHHhCcCCCCc
Confidence 34899999 999998 7899987 4 2 2468999999988886
No 89
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=52.14 E-value=9.6 Score=36.50 Aligned_cols=32 Identities=16% Similarity=0.520 Sum_probs=26.2
Q ss_pred ChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHH
Q 015261 218 DPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKH 255 (410)
Q Consensus 218 d~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~H 255 (410)
++..+..||+.- .|-|+||| -.|.+.++|-.|
T Consensus 227 ~lt~in~~LR~e---h~YC~fCG---~~y~~~edl~eh 258 (268)
T KOG1994|consen 227 RLTKINIFLRSE---HYYCFFCG---IKYKDEEDLYEH 258 (268)
T ss_pred HHHHHHHHHhcc---ceEEEEec---cccCCHHHHHHh
Confidence 667788888743 68999999 778999998876
No 90
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=51.72 E-value=3.4 Score=26.64 Aligned_cols=20 Identities=30% Similarity=0.763 Sum_probs=14.2
Q ss_pred CcccccccccCChHHHhhhhh
Q 015261 4 LTCNSCNREFNDDAEQKLHYK 24 (410)
Q Consensus 4 ftC~~C~~~F~~~~~qr~H~k 24 (410)
|+|+-|+..| +.+..+.|-+
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht~ 20 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHTS 20 (28)
T ss_dssp EEETTTTEEE-EGGGTTT---
T ss_pred CeeecCCCCc-CcCCcCCCCc
Confidence 6899999999 5667777654
No 91
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=51.64 E-value=28 Score=31.73 Aligned_cols=90 Identities=23% Similarity=0.389 Sum_probs=60.4
Q ss_pred CcccccccccCChHHHhhhhhhccccchhhhhhcCCCCCCHHHHHH--------HHH----HHHHhhh--cC------C-
Q 015261 4 LTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAGVPGVTEALFLA--------RQA----ALAQEKN--KN------A- 62 (410)
Q Consensus 4 ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~Lppvs~~~F~~--------k~~----~l~~~~~--~~------~- 62 (410)
|+|..|...--.....-.|+.|..|+=-|+.--+.||-.+.+ |.+ |.. ++..... .. .
T Consensus 1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl~k~~~d-FLqEy~~nk~KKt~~r~~~~~~~~~~~~~ie~D~~~g 79 (165)
T PF04988_consen 1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKLPKKTMD-FLQEYMVNKFKKTESRRQQLENSSEASKQIEQDVMEG 79 (165)
T ss_pred CccceeeeecccHHHHHHHHccchHHHHHHHHHhcCChHHHH-HHHHHHHhhHHHHHHHHHHHHHhhhcccccccchhhh
Confidence 899999987778899999999999998888877888866654 332 111 1111100 00 0
Q ss_pred -CC-------CcccccCcCCcc-CChHHHHHHHhhhhhhhh
Q 015261 63 -TP-------MTYSCGLCGKGY-RSSKALAQHLNSRSHIMR 94 (410)
Q Consensus 63 -~~-------~~~~C~~C~K~f-~s~~~l~~Hl~skkHk~~ 94 (410)
+. ....|..|.--- .....++.|+.|--|..+
T Consensus 80 ig~ehfm~KVEa~hCsACd~~IP~~~~~vQ~Hl~S~~H~~N 120 (165)
T PF04988_consen 80 IGQEHFMKKVEAAHCSACDVFIPMQHSSVQKHLKSQDHNKN 120 (165)
T ss_pred cCHHHHHHHHHHhhhhHhhhhccCcHHHHHHHhccHHHHhh
Confidence 00 125799997433 345669999999999874
No 92
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=50.56 E-value=6.4 Score=37.64 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=18.9
Q ss_pred CCcccCCCCCCCCChhHHhhh
Q 015261 181 DPACCFMCDLPHDAIENCMVH 201 (410)
Q Consensus 181 ~p~~ClfC~~~f~~~~~~~~H 201 (410)
.-+-|+|||..|++.++++.|
T Consensus 238 eh~YC~fCG~~y~~~edl~eh 258 (268)
T KOG1994|consen 238 EHYYCFFCGIKYKDEEDLYEH 258 (268)
T ss_pred cceEEEEeccccCCHHHHHHh
Confidence 356799999999999999988
No 93
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=48.50 E-value=8.4 Score=33.98 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.3
Q ss_pred cccCCCCCCCCChhHHhhhhhhhhcCC
Q 015261 183 ACCFMCDLPHDAIENCMVHMHKCHGFF 209 (410)
Q Consensus 183 ~~ClfC~~~f~~~~~~~~HM~~~Hgf~ 209 (410)
..||.||+.|.+ |..|..+|||+.
T Consensus 77 IicLEDGkkfKS---LKRHL~t~~gmT 100 (148)
T COG4957 77 IICLEDGKKFKS---LKRHLTTHYGLT 100 (148)
T ss_pred EEEeccCcchHH---HHHHHhcccCCC
Confidence 479999999975 688999999964
No 94
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=45.74 E-value=14 Score=35.18 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=22.4
Q ss_pred CCCCcccccCcCCccCChHHHHHHHhhhh
Q 015261 62 ATPMTYSCGLCGKGYRSSKALAQHLNSRS 90 (410)
Q Consensus 62 ~~~~~~~C~~C~K~f~s~~~l~~Hl~skk 90 (410)
.++..|.|.+|+|.|+...=...|+..|+
T Consensus 73 ~~~~K~~C~lc~KlFkg~eFV~KHI~nKH 101 (214)
T PF04959_consen 73 EDEDKWRCPLCGKLFKGPEFVRKHIFNKH 101 (214)
T ss_dssp SSSEEEEE-SSS-EESSHHHHHHHHHHH-
T ss_pred HcCCEECCCCCCcccCChHHHHHHHhhcC
Confidence 35567999999999999999999998754
No 95
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=44.02 E-value=17 Score=25.18 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=15.8
Q ss_pred CCcccccCcCCccCCh----HHHHHHHhh
Q 015261 64 PMTYSCGLCGKGYRSS----KALAQHLNS 88 (410)
Q Consensus 64 ~~~~~C~~C~K~f~s~----~~l~~Hl~s 88 (410)
.....|.+|++.+... +.|..||+.
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~ 42 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKK 42 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHHH
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhhh
Confidence 3456899999987764 569999954
No 96
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=43.24 E-value=8.3 Score=28.93 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=24.9
Q ss_pred CcccCCCCCCCCChhHHhhhhhhhhcC
Q 015261 182 PACCFMCDLPHDAIENCMVHMHKCHGF 208 (410)
Q Consensus 182 p~~ClfC~~~f~~~~~~~~HM~~~Hgf 208 (410)
-..|+-||..|....+...|..+.||.
T Consensus 17 ~lrCPRC~~~FR~~K~Y~RHVNKaH~~ 43 (65)
T COG4049 17 FLRCPRCGMVFRRRKDYIRHVNKAHGW 43 (65)
T ss_pred eeeCCchhHHHHHhHHHHHHhhHHhhh
Confidence 468999999999999999999999984
No 97
>PTZ00448 hypothetical protein; Provisional
Probab=41.93 E-value=16 Score=37.48 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=28.5
Q ss_pred cccccCcCCccCChHHHHHHHhhhhhhhhhcc
Q 015261 66 TYSCGLCGKGYRSSKALAQHLNSRSHIMRASQ 97 (410)
Q Consensus 66 ~~~C~~C~K~f~s~~~l~~Hl~skkHk~~~~~ 97 (410)
.|.|..|+-.|.+....+.|++|-.|+-|.+.
T Consensus 314 ~~tC~~C~v~F~~~~~qR~H~KSDwHrYNLKR 345 (373)
T PTZ00448 314 MLLCRKCNIQLMDHNAFKQHYRSEWHIFNTKR 345 (373)
T ss_pred CccccccccccCCHHHHHHHhhhhHHHHHHHH
Confidence 57899999999999999999999999986543
No 98
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=41.72 E-value=11 Score=39.69 Aligned_cols=28 Identities=29% Similarity=0.682 Sum_probs=26.0
Q ss_pred ccccccCCCCcccCCHHHHHHHHHhcCCccc
Q 015261 234 FMCLYCNDRCHPFNSLEAVRKHMEAKRHCKI 264 (410)
Q Consensus 234 ~~Cl~C~~~gk~F~s~~alr~HM~~k~HCki 264 (410)
..|..|+ |+|.|..++..|-.+|-|-++
T Consensus 293 lyC~vCn---KsFKseKq~kNHEnSKKHken 320 (508)
T KOG0717|consen 293 LYCVVCN---KSFKSEKQLKNHENSKKHKEN 320 (508)
T ss_pred eEEeecc---ccccchHHHHhhHHHHHHHHH
Confidence 5899999 999999999999999999864
No 99
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=41.09 E-value=18 Score=25.20 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=19.1
Q ss_pred CcccccccccC--ChHHHhhhhhh
Q 015261 4 LTCNSCNREFN--DDAEQKLHYKS 25 (410)
Q Consensus 4 ftC~~C~~~F~--~~~~qr~H~ks 25 (410)
-+|..|+..|. ++++-+.|-+-
T Consensus 14 ~~C~~CgM~Y~~~~~eD~~~H~~y 37 (41)
T PF13878_consen 14 TTCPTCGMLYSPGSPEDEKLHKKY 37 (41)
T ss_pred cCCCCCCCEECCCCHHHHHHHHHH
Confidence 58999999998 78888988875
No 100
>PF15269 zf-C2H2_7: Zinc-finger
Probab=35.96 E-value=21 Score=25.67 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.7
Q ss_pred CcccCCCCCCCCChhHHhhhhh
Q 015261 182 PACCFMCDLPHDAIENCMVHMH 203 (410)
Q Consensus 182 p~~ClfC~~~f~~~~~~~~HM~ 203 (410)
.++|..|.......+.|..||.
T Consensus 20 ~ykcfqcpftc~~kshl~nhmk 41 (54)
T PF15269_consen 20 KYKCFQCPFTCNEKSHLFNHMK 41 (54)
T ss_pred cceeecCCcccchHHHHHHHHH
Confidence 3689999999999999999997
No 101
>KOG2837 consensus Protein containing a U1-type Zn-finger and implicated in RNA splicing or processing [RNA processing and modification]
Probab=35.56 E-value=5.7 Score=38.96 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=26.3
Q ss_pred cccccCcCCccCChHHHHHHHhhhhhhh
Q 015261 66 TYSCGLCGKGYRSSKALAQHLNSRSHIM 93 (410)
Q Consensus 66 ~~~C~~C~K~f~s~~~l~~Hl~skkHk~ 93 (410)
.|.|.+|.|.|++.|.|+-|..|-.|..
T Consensus 25 RwyCqmCQkQcrDeNGFkCH~~SeSHqR 52 (309)
T KOG2837|consen 25 RWYCQMCQKQCRDENGFKCHTMSESHQR 52 (309)
T ss_pred HHHHHHHHHHhccccccccccCCHHHHH
Confidence 4789999999999999999999999987
No 102
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=35.45 E-value=26 Score=36.60 Aligned_cols=31 Identities=26% Similarity=0.574 Sum_probs=23.7
Q ss_pred CCccccccCCCCcccCCHHHHHHHH--HhcCCcccC
Q 015261 232 RDFMCLYCNDRCHPFNSLEAVRKHM--EAKRHCKIH 265 (410)
Q Consensus 232 ~~~~Cl~C~~~gk~F~s~~alr~HM--~~k~HCki~ 265 (410)
.+|.|..|+ +.|.+|+++|-=- ...-||-.-
T Consensus 127 ~~Y~Cp~C~---kkyt~Lea~~L~~~~~~~F~C~~C 159 (436)
T KOG2593|consen 127 AGYVCPNCQ---KKYTSLEALQLLDNETGEFHCENC 159 (436)
T ss_pred ccccCCccc---cchhhhHHHHhhcccCceEEEecC
Confidence 389999999 9999999998643 234577553
No 103
>KOG0402 consensus 60S ribosomal protein L37 [Translation, ribosomal structure and biogenesis]
Probab=35.18 E-value=15 Score=29.75 Aligned_cols=12 Identities=33% Similarity=0.783 Sum_probs=7.4
Q ss_pred cccccCcCCccC
Q 015261 66 TYSCGLCGKGYR 77 (410)
Q Consensus 66 ~~~C~~C~K~f~ 77 (410)
.+.|.-|.|.|.
T Consensus 54 iW~C~~C~kv~a 65 (92)
T KOG0402|consen 54 IWKCGSCKKVVA 65 (92)
T ss_pred EEecCCccceec
Confidence 456777766654
No 104
>PF12907 zf-met2: Zinc-binding
Probab=33.06 E-value=20 Score=25.06 Aligned_cols=27 Identities=15% Similarity=0.443 Sum_probs=19.9
Q ss_pred ccccCcCCcc---CChHHHHHHHhhhhhhh
Q 015261 67 YSCGLCGKGY---RSSKALAQHLNSRSHIM 93 (410)
Q Consensus 67 ~~C~~C~K~f---~s~~~l~~Hl~skkHk~ 93 (410)
+.|.+|.-+| .+..+|.+|-.+|+-|.
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHPKN 31 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCCCC
Confidence 4699998444 45678999998876553
No 105
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=32.96 E-value=20 Score=38.91 Aligned_cols=26 Identities=38% Similarity=0.888 Sum_probs=22.5
Q ss_pred CCcccccccccCChHHHhhhh--hhccc
Q 015261 3 GLTCNSCNREFNDDAEQKLHY--KSDWH 28 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~--ksdwH 28 (410)
+-.|.+||..|.+.+....|| ..|||
T Consensus 418 pnqC~~CG~R~~~~ee~sk~md~H~dwh 445 (579)
T KOG2071|consen 418 PNQCKSCGLRFDDSEERSKHMDIHDDWH 445 (579)
T ss_pred cchhcccccccccchhhhhHhhhhhhhh
Confidence 467999999999999999998 45676
No 106
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=32.66 E-value=10 Score=35.91 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCcccccccccCChHHHhhhhhhccccchhhhhhcC
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYNLKRKVAG 38 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKRrva~ 38 (410)
.++|..|+..|.+....-...|....-+.++.+-.+
T Consensus 5 ~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~ 40 (214)
T PF09986_consen 5 KITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKG 40 (214)
T ss_pred ceECCCCCCeeeeeEEEcCCceEeeecCCCccccCC
Confidence 478999999999776655555544333334333333
No 107
>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex. The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=32.23 E-value=27 Score=31.87 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=21.7
Q ss_pred ccccCcCCccCChHHHHHHHhhhhhhh
Q 015261 67 YSCGLCGKGYRSSKALAQHLNSRSHIM 93 (410)
Q Consensus 67 ~~C~~C~K~f~s~~~l~~Hl~skkHk~ 93 (410)
|.|.+|+..--....+..|+.|+-|++
T Consensus 1 F~Cs~CKfrtf~~~ei~~HleS~~H~E 27 (165)
T PF04988_consen 1 FTCSFCKFRTFEEKEIEKHLESKFHKE 27 (165)
T ss_pred CccceeeeecccHHHHHHHHccchHHH
Confidence 679999854444566999999999986
No 108
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=32.01 E-value=18 Score=27.33 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=22.3
Q ss_pred CccccccCCCCcccCCHHHHHHHHHhcCCcc-cCCCC
Q 015261 233 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCK-IHFGD 268 (410)
Q Consensus 233 ~~~Cl~C~~~gk~F~s~~alr~HM~~k~HCk-i~ye~ 268 (410)
.+.||.|++.|=.-.+....+.|++..+|+- |...+
T Consensus 11 lw~CL~Cg~~~C~~~~~~Ha~~H~~~~~H~l~v~~~~ 47 (63)
T PF02148_consen 11 LWLCLTCGYVGCGRYSNGHALKHYKETGHPLAVSLST 47 (63)
T ss_dssp EEEETTTS-EEETTTSTSHHHHHHHHHT--EEEETTT
T ss_pred eEEeCCCCcccccCCcCcHHHHhhcccCCeEEEECCC
Confidence 5789999955422223467889999999985 44443
No 109
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=31.34 E-value=21 Score=32.13 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=16.4
Q ss_pred cCCccccccCCCCcccCCHHHHHHH
Q 015261 231 KRDFMCLYCNDRCHPFNSLEAVRKH 255 (410)
Q Consensus 231 ~~~~~Cl~C~~~gk~F~s~~alr~H 255 (410)
-.--.|+.|+ +.|.+.+-+.--
T Consensus 26 RRRReC~~C~---~RFTTfE~~El~ 47 (156)
T COG1327 26 RRRRECLECG---ERFTTFERAELR 47 (156)
T ss_pred hhhhcccccc---cccchhheeeec
Confidence 3356999999 888888765544
No 110
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=30.33 E-value=17 Score=34.19 Aligned_cols=36 Identities=22% Similarity=0.607 Sum_probs=0.0
Q ss_pred CCcccccc-cccCChHHHhhhhhhccccchhhhhhcCCC
Q 015261 3 GLTCNSCN-REFNDDAEQKLHYKSDWHRYNLKRKVAGVP 40 (410)
Q Consensus 3 ~ftC~~C~-~~F~~~~~qr~H~ksdwHrYNlKRrva~Lp 40 (410)
.|+|-+|| ..|..+..+..|+...-|.|.||+ -|+|
T Consensus 101 ey~CEICGN~~Y~GrkaFekHF~E~rH~~Glrc--LGI~ 137 (196)
T PF11931_consen 101 EYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRC--LGIP 137 (196)
T ss_dssp ---------------------------------------
T ss_pred eeeeEeCCCcceecHHHHHHhcChhHHHccChh--cCCC
Confidence 48999999 556799999999998779999964 4655
No 111
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=29.00 E-value=13 Score=41.19 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=25.9
Q ss_pred CcccccCcCCccCChHHHHHHHhhhhhhhh
Q 015261 65 MTYSCGLCGKGYRSSKALAQHLNSRSHIMR 94 (410)
Q Consensus 65 ~~~~C~~C~K~f~s~~~l~~Hl~skkHk~~ 94 (410)
.-|.|..|+|.|...+++..||++..-+.+
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr~q~~ 820 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHRQQEE 820 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 358999999999999999999998766653
No 112
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=28.79 E-value=37 Score=24.30 Aligned_cols=23 Identities=35% Similarity=0.651 Sum_probs=18.0
Q ss_pred cccccCcCCccCCh-----HHHHHHHhh
Q 015261 66 TYSCGLCGKGYRSS-----KALAQHLNS 88 (410)
Q Consensus 66 ~~~C~~C~K~f~s~-----~~l~~Hl~s 88 (410)
.-.|..|++.+... +.|..||+.
T Consensus 18 ~a~C~~C~~~l~~~~~~gTs~L~rHl~~ 45 (50)
T smart00614 18 RAKCKYCGKKLSRSSKGGTSNLRRHLRR 45 (50)
T ss_pred EEEecCCCCEeeeCCCCCcHHHHHHHHh
Confidence 34699999987654 579999986
No 113
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=28.44 E-value=14 Score=33.22 Aligned_cols=19 Identities=32% Similarity=0.679 Sum_probs=14.7
Q ss_pred CCccccccCCCCcccCCHHHHH
Q 015261 232 RDFMCLYCNDRCHPFNSLEAVR 253 (410)
Q Consensus 232 ~~~~Cl~C~~~gk~F~s~~alr 253 (410)
.--.|+.|+ +.|.+.+-+.
T Consensus 27 RRReC~~C~---~RFTTyErve 45 (147)
T TIGR00244 27 RRRECLECH---ERFTTFERAE 45 (147)
T ss_pred ecccCCccC---Cccceeeecc
Confidence 356999999 8888877544
No 114
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.50 E-value=30 Score=33.77 Aligned_cols=46 Identities=22% Similarity=0.554 Sum_probs=34.3
Q ss_pred cccCCCCCCCCChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhHhcCCccccccCCCCcccCCHHHHHHHHH
Q 015261 183 ACCFMCDLPHDAIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLKVKRDFMCLYCNDRCHPFNSLEAVRKHME 257 (410)
Q Consensus 183 ~~ClfC~~~f~~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~ki~~~~~Cl~C~~~gk~F~s~~alr~HM~ 257 (410)
+.|..||-.-.-. .+-+||..-|| ..+.|+-|+ +.|.. ...+.|..
T Consensus 4 FtCnvCgEsvKKp-~vekH~srCrn------------------------~~fSCIDC~---k~F~~-~sYknH~k 49 (276)
T KOG2186|consen 4 FTCNVCGESVKKP-QVEKHMSRCRN------------------------AYFSCIDCG---KTFER-VSYKNHTK 49 (276)
T ss_pred Eehhhhhhhcccc-chHHHHHhccC------------------------CeeEEeecc---ccccc-chhhhhhh
Confidence 5799999877533 34459998776 257999999 99988 66666654
No 115
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=24.33 E-value=40 Score=25.63 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=12.6
Q ss_pred hHhcCCccccccCCCC
Q 015261 228 LKVKRDFMCLYCNDRC 243 (410)
Q Consensus 228 ~ki~~~~~Cl~C~~~g 243 (410)
++.+.+|+|..|||.|
T Consensus 45 Rk~g~~Y~Cp~CGF~G 60 (61)
T COG2888 45 RKLGNPYRCPKCGFEG 60 (61)
T ss_pred HHcCCceECCCcCccC
Confidence 3445789999999876
No 116
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.77 E-value=97 Score=30.93 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=20.5
Q ss_pred HHHhhhhhhhhhhhccccccccCCCCCCCC
Q 015261 381 EMNRTGVEAMRTRVGMKNNIIRNLPKNVPY 410 (410)
Q Consensus 381 ~~~~~~~~~~~~k~g~k~N~~~~~~~~~~~ 410 (410)
++.||.++--.+-+..+.||---||+|||.
T Consensus 82 ELdRREr~~a~~g~~~~~nNWPPLP~~~pv 111 (313)
T KOG3088|consen 82 ELDRRERALARAGIVIRENNWPPLPSFIPV 111 (313)
T ss_pred HHhHHHHHHhhccCcccccCCCCCCCCCCc
Confidence 444443333345677788999999999984
No 117
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=23.76 E-value=50 Score=35.09 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=38.4
Q ss_pred ChhHHhhhhhhhhcCCCCCcccccChHHHHHHHHhH-hcCCccccccCCCCcccCCHHHHHHHHHhcC
Q 015261 194 AIENCMVHMHKCHGFFIPDVEYLKDPKGLLTYLGLK-VKRDFMCLYCNDRCHPFNSLEAVRKHMEAKR 260 (410)
Q Consensus 194 ~~~~~~~HM~~~Hgf~ip~~~~lvd~~gLl~yl~~k-i~~~~~Cl~C~~~gk~F~s~~alr~HM~~k~ 260 (410)
++..|+.|-...|+- +---.+...|.|..+. --.-.+|..|. +.|.+.++++.||..++
T Consensus 22 si~eL~sy~~~~~~~-----~a~~~Lseal~fak~n~sWrFWiCp~Cs---kkF~d~~~~~~H~~~eH 81 (466)
T PF04780_consen 22 SIDELKSYYESVYDR-----EAADALSEALSFAKENKSWRFWICPRCS---KKFSDAESCLSHMEQEH 81 (466)
T ss_pred EHHHHHHHHHhccch-----HHHHHHHHHHHHHHhcCceeEeeCCccc---ceeCCHHHHHHHHHHhh
Confidence 567777777665441 1111344555555332 11246999999 89999999999999865
No 118
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=23.35 E-value=19 Score=39.96 Aligned_cols=25 Identities=28% Similarity=0.600 Sum_probs=23.2
Q ss_pred CCcccccccccCChHHHhhhhhhcccc
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHR 29 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHr 29 (410)
.|.|..|++.|.-...+-.|||+ ||
T Consensus 792 iFpCreC~kvF~KiKSrNAHMK~--Hr 816 (907)
T KOG4167|consen 792 IFPCRECGKVFFKIKSRNAHMKT--HR 816 (907)
T ss_pred eeehHHHHHHHHHHhhhhHHHHH--HH
Confidence 48999999999999999999999 75
No 119
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=23.28 E-value=44 Score=36.33 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.6
Q ss_pred CCcccCCCCCCCCChhHHhhhhhhh
Q 015261 181 DPACCFMCDLPHDAIENCMVHMHKC 205 (410)
Q Consensus 181 ~p~~ClfC~~~f~~~~~~~~HM~~~ 205 (410)
.|.+|.+||.+|...+..-+||..|
T Consensus 417 ~pnqC~~CG~R~~~~ee~sk~md~H 441 (579)
T KOG2071|consen 417 SPNQCKSCGLRFDDSEERSKHMDIH 441 (579)
T ss_pred CcchhcccccccccchhhhhHhhhh
Confidence 4689999999999999999999985
No 120
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=23.09 E-value=38 Score=31.50 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=28.0
Q ss_pred cccccCcCCccCChHHHHHHHhhhhhhhhhc
Q 015261 66 TYSCGLCGKGYRSSKALAQHLNSRSHIMRAS 96 (410)
Q Consensus 66 ~~~C~~C~K~f~s~~~l~~Hl~skkHk~~~~ 96 (410)
.|.|.+|.-+--+.+++..|..-|||+.+..
T Consensus 53 k~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~ 83 (222)
T COG5246 53 KYVCLLCKTKHLTEMSYVKHREGKKHKENSS 83 (222)
T ss_pred cEEeeeeccccccHHHHHHhhccchhhhhHH
Confidence 5899999999999999999999999998644
No 121
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=23.08 E-value=69 Score=23.27 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=8.0
Q ss_pred cccCcCCccCChHH
Q 015261 68 SCGLCGKGYRSSKA 81 (410)
Q Consensus 68 ~C~~C~K~f~s~~~ 81 (410)
.|++|+..|.....
T Consensus 22 ~CPlC~r~l~~e~~ 35 (54)
T PF04423_consen 22 CCPLCGRPLDEEHR 35 (54)
T ss_dssp E-TTT--EE-HHHH
T ss_pred cCCCCCCCCCHHHH
Confidence 69999999987654
No 122
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=22.90 E-value=46 Score=25.26 Aligned_cols=16 Identities=19% Similarity=0.347 Sum_probs=12.6
Q ss_pred hHhcCCccccccCCCC
Q 015261 228 LKVKRDFMCLYCNDRC 243 (410)
Q Consensus 228 ~ki~~~~~Cl~C~~~g 243 (410)
++.+.+|.|..|||.|
T Consensus 43 Rk~~~~Y~CP~CGF~G 58 (59)
T PRK14890 43 RKQSNPYTCPKCGFEG 58 (59)
T ss_pred HhcCCceECCCCCCcC
Confidence 3445689999999876
No 123
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=22.84 E-value=48 Score=31.59 Aligned_cols=42 Identities=36% Similarity=0.617 Sum_probs=28.6
Q ss_pred CccccccCCCCcccCCHHHHHHHHHhcCCcccCCCCCCchHHHhhhhhcCc
Q 015261 233 DFMCLYCNDRCHPFNSLEAVRKHMEAKRHCKIHFGDGDDEEEAELEEFYDY 283 (410)
Q Consensus 233 ~~~Cl~C~~~gk~F~s~~alr~HM~~k~HCki~ye~~~~ee~~E~~dFYDF 283 (410)
.+.|..|+ |-|...+-|++|...|+=-+| ++.+.|+.=|-.|
T Consensus 77 K~~C~lc~---KlFkg~eFV~KHI~nKH~e~v------e~~~~ev~~fnnY 118 (214)
T PF04959_consen 77 KWRCPLCG---KLFKGPEFVRKHIFNKHPEKV------EEVKKEVEYFNNY 118 (214)
T ss_dssp EEEE-SSS----EESSHHHHHHHHHHH-HHHH------HHHHHHHHHHHHH
T ss_pred EECCCCCC---cccCChHHHHHHHhhcCHHHH------HHHHHHHHHHHHH
Confidence 47899999 999999999999999874444 1345566544444
No 124
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=22.25 E-value=29 Score=32.62 Aligned_cols=29 Identities=31% Similarity=0.859 Sum_probs=0.0
Q ss_pred CcccccCcC-CccCChHHHHHHHhhhhhhh
Q 015261 65 MTYSCGLCG-KGYRSSKALAQHLNSRSHIM 93 (410)
Q Consensus 65 ~~~~C~~C~-K~f~s~~~l~~Hl~skkHk~ 93 (410)
..|.|.||| .+|.-++++..|-.-.+|..
T Consensus 100 ~ey~CEICGN~~Y~GrkaFekHF~E~rH~~ 129 (196)
T PF11931_consen 100 VEYKCEICGNQSYKGRKAFEKHFQEWRHAY 129 (196)
T ss_dssp ------------------------------
T ss_pred CeeeeEeCCCcceecHHHHHHhcChhHHHc
Confidence 359999996 67889999999999888875
No 125
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=21.74 E-value=19 Score=32.60 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=15.2
Q ss_pred CccccccCCCCcccCCHHHHHHH
Q 015261 233 DFMCLYCNDRCHPFNSLEAVRKH 255 (410)
Q Consensus 233 ~~~Cl~C~~~gk~F~s~~alr~H 255 (410)
-++|.-|| ++|.+.+.+..=
T Consensus 28 ~~~c~~c~---~~f~~~e~~~~~ 47 (154)
T PRK00464 28 RRECLACG---KRFTTFERVELV 47 (154)
T ss_pred eeeccccC---CcceEeEeccCc
Confidence 37999999 888887765433
No 126
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=21.58 E-value=74 Score=33.55 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=25.0
Q ss_pred CCcccccccccCChHHHhhhhhhccccch
Q 015261 3 GLTCNSCNREFNDDAEQKLHYKSDWHRYN 31 (410)
Q Consensus 3 ~ftC~~C~~~F~~~~~qr~H~ksdwHrYN 31 (410)
.|-|..|...|.+-+.|-.|+-.+ |-.+
T Consensus 15 gflCPiC~~dl~~~~~L~~H~d~e-H~~e 42 (505)
T KOG1842|consen 15 GFLCPICLLDLPNLSALNDHLDVE-HFEE 42 (505)
T ss_pred cccCchHhhhhhhHHHHHHHHhhh-cccc
Confidence 689999999999999999999998 6444
No 127
>PF14475 Mso1_Sec1_bdg: Sec1-binding region of Mso1
Probab=21.31 E-value=25 Score=24.68 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=15.6
Q ss_pred ceeeccccccccccCCCCCC
Q 015261 326 KTFGSREYLRYYRQKPRPSP 345 (410)
Q Consensus 326 ~~iGHRs~~rYYrQ~l~~~~ 345 (410)
-++=||.|+.||....+|-+
T Consensus 19 dT~v~r~l~~yY~~k~~~~P 38 (41)
T PF14475_consen 19 DTHVHRVLRKYYTEKGRPFP 38 (41)
T ss_pred hhHHHHHHHHHHHHcCCCCC
Confidence 45669999999998876543
No 128
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=20.98 E-value=51 Score=35.07 Aligned_cols=30 Identities=27% Similarity=0.565 Sum_probs=25.3
Q ss_pred CcccccccccCChHHHhhhhhhccccchhhh
Q 015261 4 LTCNSCNREFNDDAEQKLHYKSDWHRYNLKR 34 (410)
Q Consensus 4 ftC~~C~~~F~~~~~qr~H~ksdwHrYNlKR 34 (410)
..|.+|...|.+.+.++.|+-.+ |.=+++.
T Consensus 58 WiCp~CskkF~d~~~~~~H~~~e-H~~~l~P 87 (466)
T PF04780_consen 58 WICPRCSKKFSDAESCLSHMEQE-HPAGLKP 87 (466)
T ss_pred eeCCcccceeCCHHHHHHHHHHh-hhhhcCh
Confidence 36999999999999999999998 7555543
No 129
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=20.48 E-value=73 Score=28.31 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=24.5
Q ss_pred ccchhhhhhcCCCCCCHHHHHHHHHHHH
Q 015261 28 HRYNLKRKVAGVPGVTEALFLARQAALA 55 (410)
Q Consensus 28 HrYNlKRrva~Lppvs~~~F~~k~~~l~ 55 (410)
..+|-+|+-.++++|+.+.|...+..|+
T Consensus 131 ~~~N~~r~~~~~~~ls~~~FE~~md~lE 158 (160)
T PF10513_consen 131 ELLNKKRKSDGLEPLSEEDFEIIMDRLE 158 (160)
T ss_pred HHHHHHhhhcCCCCCCHHHHHHHHHHHh
Confidence 6788899999999999999998877654
No 130
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.44 E-value=41 Score=31.83 Aligned_cols=16 Identities=31% Similarity=0.922 Sum_probs=13.3
Q ss_pred CcccccCcCCccCChH
Q 015261 65 MTYSCGLCGKGYRSSK 80 (410)
Q Consensus 65 ~~~~C~~C~K~f~s~~ 80 (410)
+.+.|++|++.|.+..
T Consensus 4 k~~~CPvC~~~F~~~~ 19 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKK 19 (214)
T ss_pred CceECCCCCCeeeeeE
Confidence 4578999999999764
No 131
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=1.1e+02 Score=29.94 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=28.2
Q ss_pred CCCCCcccccCcCCccCChHHHHHHHhhhhhhh
Q 015261 61 NATPMTYSCGLCGKGYRSSKALAQHLNSRSHIM 93 (410)
Q Consensus 61 ~~~~~~~~C~~C~K~f~s~~~l~~Hl~skkHk~ 93 (410)
++.....+|.+|++.+--+..-..|-+...|+.
T Consensus 271 dt~~ftlRC~~Cq~glvGq~ea~eHA~~TGH~n 303 (307)
T KOG3288|consen 271 DTAKFTLRCMVCQMGLVGQKEAAEHAKATGHVN 303 (307)
T ss_pred cccceEEEeeecccceeeHHHHHHHHHhcCCCc
Confidence 456678899999999999998899999888864
Done!