Query 015263
Match_columns 410
No_of_seqs 190 out of 1168
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 5.7E-87 1.2E-91 662.5 18.5 309 26-344 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 1.5E-47 3.3E-52 364.7 23.6 250 24-336 44-305 (305)
3 PF07745 Glyco_hydro_53: Glyco 99.1 1.4E-08 3.1E-13 102.4 21.0 249 40-342 26-329 (332)
4 PF03198 Glyco_hydro_72: Gluca 98.9 2.2E-08 4.8E-13 99.5 15.2 192 26-270 30-252 (314)
5 COG3867 Arabinogalactan endo-1 98.7 1.8E-06 3.8E-11 85.2 18.6 249 40-344 65-390 (403)
6 PF00150 Cellulase: Cellulase 98.4 8E-05 1.7E-09 71.4 21.0 128 25-154 10-171 (281)
7 PRK10150 beta-D-glucuronidase; 98.3 0.00021 4.5E-09 77.6 25.9 240 41-342 316-585 (604)
8 smart00633 Glyco_10 Glycosyl h 97.7 0.0042 9E-08 60.3 19.0 214 63-341 20-250 (254)
9 PF11790 Glyco_hydro_cc: Glyco 97.2 0.012 2.6E-07 56.9 14.6 190 73-338 39-232 (239)
10 PF02836 Glyco_hydro_2_C: Glyc 96.9 0.079 1.7E-06 52.4 18.1 95 25-119 17-132 (298)
11 PF00232 Glyco_hydro_1: Glycos 96.6 0.031 6.7E-07 58.9 13.4 117 40-160 60-224 (455)
12 PF02449 Glyco_hydro_42: Beta- 96.4 0.34 7.3E-06 49.6 19.1 83 39-121 11-140 (374)
13 TIGR03356 BGL beta-galactosida 96.2 0.71 1.5E-05 48.5 20.2 79 40-120 56-163 (427)
14 cd02875 GH18_chitobiase Chitob 91.6 1.6 3.4E-05 44.8 10.8 134 51-203 55-190 (358)
15 PRK09936 hypothetical protein; 90.5 4.4 9.5E-05 40.7 12.1 78 6-83 2-96 (296)
16 cd00598 GH18_chitinase-like Th 76.7 12 0.00025 34.3 7.8 84 63-147 53-142 (210)
17 cd02874 GH18_CFLE_spore_hydrol 76.0 9.3 0.0002 37.9 7.4 82 62-147 48-138 (313)
18 PF00925 GTP_cyclohydro2: GTP 67.8 5.9 0.00013 36.4 3.5 39 41-79 129-167 (169)
19 smart00481 POLIIIAc DNA polyme 67.7 19 0.00041 27.2 5.9 44 38-81 15-63 (67)
20 PRK09525 lacZ beta-D-galactosi 67.4 43 0.00093 39.4 11.2 95 26-120 353-464 (1027)
21 cd06545 GH18_3CO4_chitinase Th 67.4 27 0.00059 33.6 8.2 80 63-147 50-133 (253)
22 TIGR01579 MiaB-like-C MiaB-lik 64.9 83 0.0018 32.6 11.8 109 128-263 272-380 (414)
23 COG4782 Uncharacterized protei 63.9 23 0.00049 36.8 7.1 43 252-297 143-188 (377)
24 PF14488 DUF4434: Domain of un 62.6 15 0.00032 33.7 5.1 43 40-82 22-88 (166)
25 PRK10340 ebgA cryptic beta-D-g 60.2 55 0.0012 38.5 10.3 95 26-120 337-451 (1021)
26 PRK13511 6-phospho-beta-galact 58.6 22 0.00047 38.0 6.2 47 39-85 55-120 (469)
27 TIGR00505 ribA GTP cyclohydrol 56.2 18 0.0004 33.8 4.7 33 44-76 131-163 (191)
28 COG3934 Endo-beta-mannanase [C 55.6 67 0.0015 34.7 9.0 185 95-342 124-312 (587)
29 cd02873 GH18_IDGF The IDGF's ( 55.5 84 0.0018 32.9 9.9 56 128-203 168-223 (413)
30 PRK00393 ribA GTP cyclohydrola 55.5 19 0.00041 33.9 4.7 33 44-76 134-166 (197)
31 PF03662 Glyco_hydro_79n: Glyc 55.3 50 0.0011 33.7 7.9 82 63-145 113-203 (319)
32 PF14587 Glyco_hydr_30_2: O-Gl 55.0 2.8E+02 0.006 29.2 13.4 98 63-160 108-231 (384)
33 KOG0626 Beta-glucosidase, lact 53.8 71 0.0015 34.7 9.0 75 253-335 404-486 (524)
34 PLN02998 beta-glucosidase 52.2 25 0.00055 37.8 5.5 73 254-337 390-466 (497)
35 smart00636 Glyco_18 Glycosyl h 50.4 51 0.0011 32.8 7.1 79 65-145 57-142 (334)
36 cd04734 OYE_like_3_FMN Old yel 50.1 2.9E+02 0.0064 28.0 15.2 129 165-298 63-206 (343)
37 PLN02814 beta-glucosidase 50.0 55 0.0012 35.4 7.6 46 40-85 79-143 (504)
38 cd02876 GH18_SI-CLP Stabilin-1 49.2 1.4E+02 0.003 29.7 10.0 126 62-203 54-190 (318)
39 PRK14327 (dimethylallyl)adenos 48.9 3.8E+02 0.0083 29.0 14.5 61 128-207 346-406 (509)
40 PLN02849 beta-glucosidase 48.9 33 0.00071 37.0 5.7 75 254-337 383-461 (503)
41 PF05990 DUF900: Alpha/beta hy 47.7 77 0.0017 30.4 7.6 42 251-295 44-88 (233)
42 PRK14328 (dimethylallyl)adenos 47.7 3.2E+02 0.007 28.6 12.9 59 128-205 281-339 (439)
43 cd02872 GH18_chitolectin_chito 47.3 49 0.0011 33.5 6.5 113 71-203 69-191 (362)
44 cd00641 GTP_cyclohydro2 GTP cy 46.0 33 0.00071 32.1 4.6 33 44-76 133-165 (193)
45 PRK14334 (dimethylallyl)adenos 45.6 3.9E+02 0.0084 28.1 15.2 58 128-204 271-328 (440)
46 COG4130 Predicted sugar epimer 45.2 2E+02 0.0044 28.1 9.7 107 37-151 16-140 (272)
47 PRK09589 celA 6-phospho-beta-g 45.0 52 0.0011 35.2 6.5 46 40-85 69-134 (476)
48 COG4213 XylF ABC-type xylose t 44.7 34 0.00074 34.9 4.7 77 62-157 175-251 (341)
49 PF00331 Glyco_hydro_10: Glyco 44.3 28 0.0006 35.1 4.1 220 63-341 63-312 (320)
50 PRK14336 (dimethylallyl)adenos 43.5 4E+02 0.0087 27.8 12.7 110 128-263 258-367 (418)
51 PRK12485 bifunctional 3,4-dihy 42.5 30 0.00065 35.9 4.1 33 43-76 330-362 (369)
52 PF06180 CbiK: Cobalt chelatas 41.9 1.5E+02 0.0034 29.2 8.8 138 36-205 56-208 (262)
53 PRK14339 (dimethylallyl)adenos 41.3 4.2E+02 0.009 27.7 12.4 109 128-263 264-372 (420)
54 cd04743 NPD_PKS 2-Nitropropane 41.1 1.6E+02 0.0036 30.0 9.0 78 25-119 57-134 (320)
55 PF01229 Glyco_hydro_39: Glyco 40.6 1.9E+02 0.0042 30.8 10.0 182 112-339 158-350 (486)
56 PRK14330 (dimethylallyl)adenos 40.2 4.6E+02 0.0099 27.4 13.4 128 110-264 250-384 (434)
57 cd02932 OYE_YqiM_FMN Old yello 39.8 4.1E+02 0.0088 26.7 14.2 130 166-298 64-219 (336)
58 PRK14019 bifunctional 3,4-dihy 39.2 37 0.0008 35.3 4.1 33 43-76 327-359 (367)
59 PRK09593 arb 6-phospho-beta-gl 39.1 56 0.0012 35.0 5.6 46 40-85 75-140 (478)
60 KOG0078 GTP-binding protein SE 39.0 75 0.0016 30.5 5.8 79 25-119 44-127 (207)
61 PF02055 Glyco_hydro_30: O-Gly 38.8 5.1E+02 0.011 28.0 12.8 64 96-159 209-283 (496)
62 PF04909 Amidohydro_2: Amidohy 38.4 73 0.0016 29.8 5.8 117 93-267 57-175 (273)
63 PF12876 Cellulase-like: Sugar 38.4 84 0.0018 25.3 5.4 47 107-156 8-63 (88)
64 PRK14332 (dimethylallyl)adenos 37.4 3.6E+02 0.0078 28.6 11.3 129 110-265 261-396 (449)
65 PRK09318 bifunctional 3,4-dihy 36.0 52 0.0011 34.4 4.6 38 43-80 319-356 (387)
66 PRK08815 GTP cyclohydrolase; P 35.7 53 0.0011 34.3 4.6 38 43-80 304-341 (375)
67 PRK09311 bifunctional 3,4-dihy 35.6 65 0.0014 33.9 5.3 38 42-79 337-374 (402)
68 PRK09319 bifunctional 3,4-dihy 35.6 67 0.0015 35.2 5.5 39 42-80 341-379 (555)
69 TIGR03632 bact_S11 30S ribosom 35.4 86 0.0019 26.7 5.2 36 41-76 50-90 (108)
70 TIGR01233 lacG 6-phospho-beta- 35.4 1.2E+02 0.0026 32.3 7.4 47 39-85 54-119 (467)
71 PRK15014 6-phospho-beta-glucos 35.3 67 0.0015 34.4 5.5 46 39-84 70-135 (477)
72 PRK09314 bifunctional 3,4-dihy 35.2 50 0.0011 33.9 4.3 40 37-76 294-334 (339)
73 PLN02831 Bifunctional GTP cycl 33.1 79 0.0017 33.8 5.5 39 42-80 371-409 (450)
74 cd02803 OYE_like_FMN_family Ol 32.5 5E+02 0.011 25.6 12.8 129 165-298 63-206 (327)
75 COG5016 Pyruvate/oxaloacetate 31.9 71 0.0015 33.8 4.7 49 30-80 92-146 (472)
76 cd06418 GH25_BacA-like BacA is 31.3 4.7E+02 0.01 24.9 12.3 106 38-148 21-143 (212)
77 TIGR03234 OH-pyruv-isom hydrox 30.8 1.2E+02 0.0026 28.8 6.0 52 25-77 2-57 (254)
78 TIGR03628 arch_S11P archaeal r 30.6 1.1E+02 0.0024 26.6 5.1 36 41-76 53-101 (114)
79 COG0621 MiaB 2-methylthioadeni 30.6 6.9E+02 0.015 26.7 13.6 185 25-266 195-390 (437)
80 PRK09989 hypothetical protein; 30.0 4.9E+02 0.011 24.7 11.7 51 26-77 4-58 (258)
81 PRK09997 hydroxypyruvate isome 29.9 4.9E+02 0.011 24.7 11.7 51 26-77 4-58 (258)
82 COG1433 Uncharacterized conser 29.7 1.1E+02 0.0025 26.7 5.0 39 42-80 56-94 (121)
83 PF12365 DUF3649: Protein of u 29.3 72 0.0016 20.9 2.8 26 385-410 2-28 (28)
84 PF14871 GHL6: Hypothetical gl 29.0 1.3E+02 0.0029 26.5 5.4 43 39-81 1-66 (132)
85 cd02879 GH18_plant_chitinase_c 28.2 1.5E+02 0.0032 29.5 6.3 42 254-295 64-106 (299)
86 PRK14042 pyruvate carboxylase 27.7 1E+02 0.0022 34.1 5.5 38 43-80 101-144 (596)
87 PF14606 Lipase_GDSL_3: GDSL-l 27.6 4E+02 0.0086 24.9 8.6 55 234-294 76-132 (178)
88 COG3858 Predicted glycosyl hyd 27.5 1.2E+02 0.0026 32.1 5.6 85 61-148 149-243 (423)
89 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.4 6E+02 0.013 24.9 10.9 92 41-142 94-191 (275)
90 PRK12581 oxaloacetate decarbox 27.4 1.1E+02 0.0025 32.8 5.5 40 41-80 108-153 (468)
91 PF13377 Peripla_BP_3: Peripla 27.3 1.9E+02 0.0041 24.6 6.2 110 45-177 2-123 (160)
92 PRK07198 hypothetical protein; 27.0 58 0.0013 34.2 3.2 38 43-80 337-375 (418)
93 PF00704 Glyco_hydro_18: Glyco 26.9 1.1E+02 0.0024 30.0 5.2 76 69-145 70-152 (343)
94 PF02811 PHP: PHP domain; Int 26.0 1.3E+02 0.0028 26.2 4.9 44 38-81 16-64 (175)
95 cd02871 GH18_chitinase_D-like 25.9 2.8E+02 0.006 27.7 7.8 78 65-143 66-146 (312)
96 PRK09852 cryptic 6-phospho-bet 25.6 1.8E+02 0.0038 31.3 6.6 46 40-85 73-138 (474)
97 CHL00041 rps11 ribosomal prote 25.5 1.6E+02 0.0035 25.4 5.2 36 41-76 63-103 (116)
98 COG2730 BglC Endoglucanase [Ca 25.5 6.9E+02 0.015 26.0 10.9 103 41-145 76-218 (407)
99 PRK09607 rps11p 30S ribosomal 25.2 1.5E+02 0.0033 26.4 5.1 36 41-76 60-108 (132)
100 PF00411 Ribosomal_S11: Riboso 25.2 1.2E+02 0.0026 25.9 4.3 37 41-77 50-91 (110)
101 PRK06552 keto-hydroxyglutarate 25.0 6E+02 0.013 24.1 11.0 88 39-143 118-210 (213)
102 PRK13347 coproporphyrinogen II 24.5 66 0.0014 34.0 3.2 21 128-148 262-282 (453)
103 COG2159 Predicted metal-depend 23.0 3.1E+02 0.0068 27.3 7.5 55 134-203 114-168 (293)
104 PRK08091 ribulose-phosphate 3- 22.9 7E+02 0.015 24.2 10.4 100 39-152 79-183 (228)
105 cd06542 GH18_EndoS-like Endo-b 22.6 3.7E+02 0.008 25.6 7.7 82 62-144 54-143 (255)
106 cd06548 GH18_chitinase The GH1 22.4 2E+02 0.0044 28.7 6.1 80 66-146 76-169 (322)
107 COG0807 RibA GTP cyclohydrolas 22.0 1.7E+02 0.0036 27.8 5.0 39 44-82 133-171 (193)
108 PRK05309 30S ribosomal protein 21.9 2.1E+02 0.0045 25.3 5.3 36 41-76 67-107 (128)
109 TIGR01125 MiaB-like tRNA modif 21.8 9.2E+02 0.02 25.1 12.9 62 128-208 269-330 (430)
110 PRK13586 1-(5-phosphoribosyl)- 21.5 7.2E+02 0.016 23.9 9.4 70 38-122 30-108 (232)
111 COG3250 LacZ Beta-galactosidas 21.5 5.8E+02 0.012 29.5 10.0 82 40-121 323-409 (808)
112 cd01543 PBP1_XylR Ligand-bindi 21.3 5.6E+02 0.012 23.7 8.6 127 40-187 97-237 (265)
113 PF00977 His_biosynth: Histidi 21.2 2.1E+02 0.0045 27.3 5.6 70 38-122 29-108 (229)
114 cd06544 GH18_narbonin Narbonin 21.1 7.8E+02 0.017 24.0 10.4 80 63-146 59-146 (253)
115 cd04723 HisA_HisF Phosphoribos 21.0 4.3E+02 0.0092 25.2 7.7 69 39-122 36-113 (233)
116 PRK14114 1-(5-phosphoribosyl)- 21.0 4.3E+02 0.0093 25.6 7.8 70 38-122 30-108 (241)
117 PF00834 Ribul_P_3_epim: Ribul 21.0 7E+02 0.015 23.4 10.0 99 39-153 68-171 (201)
118 TIGR03581 EF_0839 conserved hy 20.3 1.8E+02 0.0039 28.3 4.8 57 18-74 111-179 (236)
119 cd02929 TMADH_HD_FMN Trimethyl 20.1 9.5E+02 0.021 24.6 13.7 126 166-298 69-215 (370)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=5.7e-87 Score=662.47 Aligned_cols=309 Identities=52% Similarity=0.971 Sum_probs=254.5
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEeccccccccC-CHHHHHHHHHHHhhhh
Q 015263 26 IGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLAKMR-DPDCAKAWIKSNVQAY 104 (410)
Q Consensus 26 ~GInYg~~~~nlps~~~v~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~lGv~n~~l~~~a-~~~~A~~wv~~~V~~~ 104 (410)
+|||||+.+||+|+|+++++++|+++|++||||++|+++|+|++++||+|++||+|+++++++ ++..|..|+++||.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 699999999999999999999999999999999999999999999999999999999999997 7889999999999999
Q ss_pred CCCCcEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhh
Q 015263 105 LPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPI 184 (410)
Q Consensus 105 ~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ 184 (410)
+|.++|+.|+||||++..... ..|+|+|+++|++|++.||+++|||+|+++++++..+||||+|.|++++.+.|.++
T Consensus 81 ~~~~~i~~i~VGnEv~~~~~~---~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~~~~ 157 (310)
T PF00332_consen 81 LPAVNIRYIAVGNEVLTGTDN---AYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVMDPL 157 (310)
T ss_dssp TTTSEEEEEEEEES-TCCSGG---GGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHHHHH
T ss_pred CcccceeeeecccccccCccc---eeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhhhHH
Confidence 999999999999999976432 28999999999999999999899999999999999999999999999999999999
Q ss_pred hhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCCCCccEEEeee
Q 015263 185 LDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISET 264 (410)
Q Consensus 185 ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~~~~~VvVsET 264 (410)
++||.+|+|||++|+||||+|..+|++++|+||+|+++..+.|+ +++|+||||+|+|++++||+++|+++++|+|+||
T Consensus 158 l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~D~--~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ET 235 (310)
T PF00332_consen 158 LKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVVDG--GLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVGET 235 (310)
T ss_dssp HHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SEET--TEEESSHHHHHHHHHHHHHHTTT-TT--EEEEEE
T ss_pred HHHhhccCCCceeccchhhhccCCcccCCccccccccccccccc--chhhhHHHHHHHHHHHHHHHHhCCCCceeEEecc
Confidence 99999999999999999999999999999999999998877765 7899999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEEEeecCCCCCCCCCCCceeeecCCCCeeeeeec
Q 015263 265 GWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGPTSERNYGLFKPDGSPAYSLGI 344 (410)
Q Consensus 265 GWPS~G~~~~~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE~wK~g~~~E~~wGLf~~dg~~ky~l~~ 344 (410)
||||+|+ .+|+++||+.|++|+++++. +|||+||+..+++||||||||+||+++.+|||||||++||+|||+|+|
T Consensus 236 GWPs~G~---~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~~~~E~~wGlf~~d~~~ky~~~f 310 (310)
T PF00332_consen 236 GWPSAGD---PGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPGPEVERHWGLFYPDGTPKYDLDF 310 (310)
T ss_dssp ---SSSS---TTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSSSGGGGG--SB-TTSSBSS----
T ss_pred ccccCCC---CCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCCCcccceeeeECCCCCeecCCCC
Confidence 9999998 46999999999999999985 799999999999999999999999988899999999999999999987
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-47 Score=364.73 Aligned_cols=250 Identities=25% Similarity=0.374 Sum_probs=208.2
Q ss_pred CceeEEecCCCCCC--CCHHHH---HHHHhhcCCCEEEeccCC----hHHHHHHHhcCCeEEEEeccccccccCCHHHHH
Q 015263 24 TSIGINYGQIANNL--PTPENV---IPLVKSIGATRVKLYDAD----PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAK 94 (410)
Q Consensus 24 ~~~GInYg~~~~nl--ps~~~v---~~llks~~i~~VRlY~~d----~~vL~A~~~tgi~V~lGv~n~~l~~~a~~~~A~ 94 (410)
...+|||+++.+|. |+.+++ +++|++.+. .||+|++| ++|++|+...|+||+||||..+..+-+ . +
T Consensus 44 g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~tdd~~~~-~---~ 118 (305)
T COG5309 44 GFLAFTLGPYNDDGTCKSADQVASDLELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTDDIHDA-V---E 118 (305)
T ss_pred cccceeccccCCCCCCcCHHHHHhHHHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEeeccchhhh-H---H
Confidence 36899999999985 887776 556666653 99999988 478899999999999999986643321 1 2
Q ss_pred HHHHHHhhhhCCCCcEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccc
Q 015263 95 AWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFR 174 (410)
Q Consensus 95 ~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~ 174 (410)
..+..++.++..++.|++|+||||+|+|++.+ +++|+.+|..||++|+.+|++ .||+|+++|.+|.+ .
T Consensus 119 ~til~ay~~~~~~d~v~~v~VGnEal~r~~~t-asql~~~I~~vrsav~~agy~--gpV~T~dsw~~~~~-n-------- 186 (305)
T COG5309 119 KTILSAYLPYNGWDDVTTVTVGNEALNRNDLT-ASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWNVVIN-N-------- 186 (305)
T ss_pred HHHHHHHhccCCCCceEEEEechhhhhcCCCC-HHHHHHHHHHHHHHHHhcCCC--CceeecccceeeeC-C--------
Confidence 24566788888899999999999999999998 999999999999999999997 58999999999976 2
Q ss_pred ccchhhhhhhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCC
Q 015263 175 KDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGY 254 (410)
Q Consensus 175 ~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~ 254 (410)
+.||+..|| +++|.||||+.....+ +.+ .++..|+.-++.+ +|
T Consensus 187 ----p~l~~~SDf-------ia~N~~aYwd~~~~a~------------------~~~----~f~~~q~e~vqsa---~g- 229 (305)
T COG5309 187 ----PELCQASDF-------IAANAHAYWDGQTVAN------------------AAG----TFLLEQLERVQSA---CG- 229 (305)
T ss_pred ----hHHhhhhhh-------hhcccchhccccchhh------------------hhh----HHHHHHHHHHHHh---cC-
Confidence 478999999 9999999999764321 111 2455678877766 34
Q ss_pred CCccEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEEEeecCCCCC-CC-CCCCceee
Q 015263 255 KKLLLHISETGWPSKGDEDE-AGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKP-GP-TSERNYGL 331 (410)
Q Consensus 255 ~~~~VvVsETGWPS~G~~~~-~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE~wK~-g~-~~E~~wGL 331 (410)
.+|+++|+||||||+|..+| +.||++||+.|+++++|.+++ + +.++|+||+|||+||. +. ++|+|||+
T Consensus 230 ~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~-~--------G~d~fvfeAFdd~WK~~~~y~VEkywGv 300 (305)
T COG5309 230 TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRS-C--------GYDVFVFEAFDDDWKADGSYGVEKYWGV 300 (305)
T ss_pred CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhc-c--------CccEEEeeeccccccCccccchhhceee
Confidence 35999999999999999998 899999999999999999863 3 4899999999999995 44 79999999
Q ss_pred ecCCC
Q 015263 332 FKPDG 336 (410)
Q Consensus 332 f~~dg 336 (410)
++.|+
T Consensus 301 ~~s~~ 305 (305)
T COG5309 301 LSSDR 305 (305)
T ss_pred eccCC
Confidence 99875
No 3
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.08 E-value=1.4e-08 Score=102.37 Aligned_cols=249 Identities=18% Similarity=0.227 Sum_probs=122.2
Q ss_pred HHHHHHHHhhcCCCEEEe--c-c------CC-hHH---HHHHHhcCCeEEEEecccc---------ccc-cC--CHHHHH
Q 015263 40 PENVIPLVKSIGATRVKL--Y-D------AD-PKV---LKAFANTGVEFTVSLGNEY---------LAK-MR--DPDCAK 94 (410)
Q Consensus 40 ~~~v~~llks~~i~~VRl--Y-~------~d-~~v---L~A~~~tgi~V~lGv~n~~---------l~~-~a--~~~~A~ 94 (410)
.++.+++||..|++.||+ + + .| ..+ .+.+++.||+|+|-.--++ ++. .. +.++-.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 467899999999986665 4 1 12 234 4556679999999985432 111 11 222211
Q ss_pred ----HHHHHHhhhhC-CCCcEEEEEeccccccc-----CCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccc
Q 015263 95 ----AWIKSNVQAYL-PATKITCITVGNEVLTF-----NDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGS 164 (410)
Q Consensus 95 ----~wv~~~V~~~~-p~~~I~~I~VGNEvl~~-----~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~ 164 (410)
.+.++-+...- -...++.|-||||+=.+ +...-.+.+...++.-.+++|+..-+.+|-|-.+...+
T Consensus 106 ~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~---- 181 (332)
T PF07745_consen 106 KAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGD---- 181 (332)
T ss_dssp HHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTS----
T ss_pred HHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCc----
Confidence 12222122111 23578899999998543 22233677888888888888875543233333222111
Q ss_pred cCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHH
Q 015263 165 SYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDA 244 (410)
Q Consensus 165 s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDa 244 (410)
...++-=+......-+|| +.++++.||||... -+-+...++.
T Consensus 182 -----~~~~~~~f~~l~~~g~d~-----DviGlSyYP~w~~~----------------------------l~~l~~~l~~ 223 (332)
T PF07745_consen 182 -----NDLYRWFFDNLKAAGVDF-----DVIGLSYYPFWHGT----------------------------LEDLKNNLND 223 (332)
T ss_dssp -----HHHHHHHHHHHHHTTGG------SEEEEEE-STTST-----------------------------HHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHhcCCCc-----ceEEEecCCCCcch----------------------------HHHHHHHHHH
Confidence 101110000111122444 44899999999751 0122223333
Q ss_pred HHHHHHHcCCCCccEEEeeeccCCCCCC-----CC---------CCCCHHHHHHHHHHHHHHHHccCCCCCCCCCCccEE
Q 015263 245 VYAALASLGYKKLLLHISETGWPSKGDE-----DE---------AGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIY 310 (410)
Q Consensus 245 v~~Al~~~g~~~~~VvVsETGWPS~G~~-----~~---------~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y 310 (410)
+. ++. +|+|+|.|||||..-+. +. -.+|++.|++|++++++.+.+-.+ +..+-+|
T Consensus 224 l~---~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~p~-----~~g~Gvf 292 (332)
T PF07745_consen 224 LA---SRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNVPN-----GGGLGVF 292 (332)
T ss_dssp HH---HHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEEEE
T ss_pred HH---HHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHhcc-----CCeEEEE
Confidence 22 333 58999999999998221 11 136899999999999999875211 1235566
Q ss_pred EEEe-ecCCC-----CCCCCCCCceeeecCCCCeeeee
Q 015263 311 VFAL-FNENL-----KPGPTSERNYGLFKPDGSPAYSL 342 (410)
Q Consensus 311 ~F~~-FDE~w-----K~g~~~E~~wGLf~~dg~~ky~l 342 (410)
+-|- .-..+ ..|...|.. +||+.+|++--.|
T Consensus 293 YWeP~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 293 YWEPAWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EE-TT-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred eeccccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 5552 22221 234444544 8999888875443
No 4
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.93 E-value=2.2e-08 Score=99.49 Aligned_cols=192 Identities=23% Similarity=0.443 Sum_probs=101.3
Q ss_pred eeEEecCCCCC--------CCCH---HHHHHHHhhcCCCEEEeccCCh-----HHHHHHHhcCCeEEEEeccccccccC-
Q 015263 26 IGINYGQIANN--------LPTP---ENVIPLVKSIGATRVKLYDADP-----KVLKAFANTGVEFTVSLGNEYLAKMR- 88 (410)
Q Consensus 26 ~GInYg~~~~n--------lps~---~~v~~llks~~i~~VRlY~~d~-----~vL~A~~~tgi~V~lGv~n~~l~~~a- 88 (410)
.||.|-|-++. |.++ +.++.+||.+|++.||+|..|| .-+++|++.||-|++.+... ..++.
T Consensus 30 kGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p-~~sI~r 108 (314)
T PF03198_consen 30 KGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTP-NGSINR 108 (314)
T ss_dssp EEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BT-TBS--T
T ss_pred eeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCC-CccccC
Confidence 59999887661 2222 4678899999999999998883 57899999999999999865 23332
Q ss_pred -CHHHHHHH-------HHHHhhhhCCCCcEEEEEecccccccCC-CCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeec
Q 015263 89 -DPDCAKAW-------IKSNVQAYLPATKITCITVGNEVLTFND-TSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSL 159 (410)
Q Consensus 89 -~~~~A~~w-------v~~~V~~~~p~~~I~~I~VGNEvl~~~~-~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~ 159 (410)
++ +..| ..+-|..+..=+++-+..+|||++.... ...++.+-.+++++|+-+++.++. +|||+-+-.-
T Consensus 109 ~~P--~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~R-~IPVGYsaaD 185 (314)
T PF03198_consen 109 SDP--APSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGYR-SIPVGYSAAD 185 (314)
T ss_dssp TS--------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EEEEE--
T ss_pred CCC--cCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCCC-CCceeEEccC
Confidence 33 1123 2233444433368999999999998642 334678889999999999999985 6999876432
Q ss_pred ccccccCCCCCccccccchhhhh-----hhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCCCcccCCCchhh
Q 015263 160 GVLGSSYPPSAGAFRKDLVDCIT-----PILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHY 234 (410)
Q Consensus 160 ~vl~~s~PPS~g~F~~dl~~~l~-----~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y 234 (410)
. ..+|.++..++. .-+|| +++|.|-+=.. .-|+ ...|
T Consensus 186 ~----------~~~r~~~a~Yl~Cg~~~~~iDf-------~g~N~Y~WCg~-----------Stf~----------~SGy 227 (314)
T PF03198_consen 186 D----------AEIRQDLANYLNCGDDDERIDF-------FGLNSYEWCGD-----------STFE----------TSGY 227 (314)
T ss_dssp -----------TTTHHHHHHHTTBTT-----S--------EEEEE----SS-------------HH----------HHSH
T ss_pred C----------hhHHHHHHHHhcCCCcccccce-------eeeccceecCC-----------Cccc----------cccH
Confidence 1 123444444432 24577 89999854321 1111 0125
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCC
Q 015263 235 DNMLFAQIDAVYAALASLGYKKLLLHISETGWPSKG 270 (410)
Q Consensus 235 ~nl~daqvDav~~Al~~~g~~~~~VvVsETGWPS~G 270 (410)
+.+.+. . .++ .+||..+|.|--+..
T Consensus 228 ~~l~~~--------f--~~y-~vPvffSEyGCn~~~ 252 (314)
T PF03198_consen 228 DRLTKE--------F--SNY-SVPVFFSEYGCNTVT 252 (314)
T ss_dssp HHHHHH--------H--TT--SS-EEEEEE---SSS
T ss_pred HHHHHH--------h--hCC-CCCeEEcccCCCCCC
Confidence 554432 2 244 599999999997654
No 5
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=1.8e-06 Score=85.17 Aligned_cols=249 Identities=20% Similarity=0.307 Sum_probs=138.8
Q ss_pred HHHHHHHHhhcCCCEEEe--c----cCC-----------h---HHHHHHHhcCCeEEEEeccccccccCCH---HHHHHH
Q 015263 40 PENVIPLVKSIGATRVKL--Y----DAD-----------P---KVLKAFANTGVEFTVSLGNEYLAKMRDP---DCAKAW 96 (410)
Q Consensus 40 ~~~v~~llks~~i~~VRl--Y----~~d-----------~---~vL~A~~~tgi~V~lGv~n~~l~~~a~~---~~A~~w 96 (410)
.++.+++||..|++.||+ | |.| . .+-+.+++.||||++-.--++. .++| ..-.+|
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDf--waDPakQ~kPkaW 142 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDF--WADPAKQKKPKAW 142 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhh--ccChhhcCCcHHh
Confidence 567889999999986665 3 444 1 2334456789999998754431 1221 111223
Q ss_pred H-------HHHhhhhC---------CCCcEEEEEeccccccc-----CCCCchhhHHHHHHHHHHHHHhCCCCCCeEEee
Q 015263 97 I-------KSNVQAYL---------PATKITCITVGNEVLTF-----NDTSLSGCLLPAMESVHTALVNLGLDKQVSVTT 155 (410)
Q Consensus 97 v-------~~~V~~~~---------p~~~I~~I~VGNEvl~~-----~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsT 155 (410)
. +++|-.|- -...+..|-||||.-.. ++..-.+.+...+..--+++|... ..|+|--
T Consensus 143 ~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~l 220 (403)
T COG3867 143 ENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVAL 220 (403)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEE
Confidence 2 22222221 12457789999998532 222113455555555556665532 3466543
Q ss_pred eeecccccccCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCCCcccCCCchhhh
Q 015263 156 AHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYD 235 (410)
Q Consensus 156 a~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~ 235 (410)
- +.+ |-..+.|+-=....-+.-+|| +.|..--||||.+.-+ .++ +
T Consensus 221 H-----la~--g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~----------------------nL~-~ 265 (403)
T COG3867 221 H-----LAE--GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN----------------------NLT-T 265 (403)
T ss_pred E-----ecC--CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH----------------------HHH-h
Confidence 2 222 222344542111233455666 4588999999986321 111 1
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccEEEeeecc--------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHccCCCCC
Q 015263 236 NMLFAQIDAVYAALASLGYKKLLLHISETGW--------------PSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPM 301 (410)
Q Consensus 236 nl~daqvDav~~Al~~~g~~~~~VvVsETGW--------------PS~G~~~~~~As~~Na~~y~~~li~~~~~~~GTP~ 301 (410)
|| +++- .+ | +|.|+|.||+. |+.+..-+--.+++-|++|.+++|..+.. .|.
T Consensus 266 nl-~dia-------~r--Y-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n---vp~ 331 (403)
T COG3867 266 NL-NDIA-------SR--Y-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN---VPK 331 (403)
T ss_pred HH-HHHH-------HH--h-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---CCC
Confidence 22 2111 11 2 58999999998 66654333346789999999999999863 233
Q ss_pred CCCCCccEEEEE-------------------eecCCCCCCCCCCCceeeecCCCCeeeeeec
Q 015263 302 RPNCDLNIYVFA-------------------LFNENLKPGPTSERNYGLFKPDGSPAYSLGI 344 (410)
Q Consensus 302 rp~~~~~~y~F~-------------------~FDE~wK~g~~~E~~wGLf~~dg~~ky~l~~ 344 (410)
.. ..-+|+.| .-+|+|+.|+.++. =-||+-+|.|--.|++
T Consensus 332 ~~--GlGvFYWEp~wipv~~g~gwat~~~~~y~~e~w~~gsavdN-qaLfdf~G~~LPSl~v 390 (403)
T COG3867 332 SN--GLGVFYWEPAWIPVVLGSGWATSYAAKYDPENWGEGSAVDN-QALFDFNGHPLPSLNV 390 (403)
T ss_pred CC--ceEEEEecccceeccCCCccccchhhccCcccccCCCccch-hhhhhccCCcCcchhh
Confidence 22 23444433 23466766654333 2578888887766654
No 6
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.36 E-value=8e-05 Score=71.41 Aligned_cols=128 Identities=19% Similarity=0.142 Sum_probs=82.4
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHhhcCCCEEEeccC-------------C-------hHHHHHHHhcCCeEEEEecccc-
Q 015263 25 SIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDA-------------D-------PKVLKAFANTGVEFTVSLGNEY- 83 (410)
Q Consensus 25 ~~GInYg~~~~nlps~~~v~~llks~~i~~VRlY~~-------------d-------~~vL~A~~~tgi~V~lGv~n~~- 83 (410)
..|+|-. ..++. ..+++++.+++.|++.|||.-. + ..+|+++++.||+|+|.+....
T Consensus 10 ~~G~n~~-w~~~~-~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~ 87 (281)
T PF00150_consen 10 WRGFNTH-WYNPS-ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPG 87 (281)
T ss_dssp EEEEEET-TSGGG-SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTT
T ss_pred eeeeecc-cCCCC-CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 3466654 22222 6789999999999999999711 1 2588889999999999988641
Q ss_pred ----ccccCCHHHHHHHHHH---HhhhhC-CCCcEEEEEecccccccCCC-C----chhhHHHHHHHHHHHHHhCCCCCC
Q 015263 84 ----LAKMRDPDCAKAWIKS---NVQAYL-PATKITCITVGNEVLTFNDT-S----LSGCLLPAMESVHTALVNLGLDKQ 150 (410)
Q Consensus 84 ----l~~~a~~~~A~~wv~~---~V~~~~-p~~~I~~I~VGNEvl~~~~~-s----~~~~Ll~am~~vr~aL~~~Gl~~~ 150 (410)
............|+++ .+...+ ....|.++=+.||....... . ....+.+.++.+.+++++.+-...
T Consensus 88 w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~ 167 (281)
T PF00150_consen 88 WANGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHL 167 (281)
T ss_dssp CSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSE
T ss_pred ccccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcce
Confidence 1111223333334333 333333 44568899999999876432 1 136788999999999999987643
Q ss_pred eEEe
Q 015263 151 VSVT 154 (410)
Q Consensus 151 I~Vs 154 (410)
|-|.
T Consensus 168 i~~~ 171 (281)
T PF00150_consen 168 IIVG 171 (281)
T ss_dssp EEEE
T ss_pred eecC
Confidence 3333
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.34 E-value=0.00021 Score=77.63 Aligned_cols=240 Identities=13% Similarity=0.102 Sum_probs=136.9
Q ss_pred HHHHHHHhhcCCCEEEec--cCChHHHHHHHhcCCeEEEEecccc---------------ccccC----CH---HHHHHH
Q 015263 41 ENVIPLVKSIGATRVKLY--DADPKVLKAFANTGVEFTVSLGNEY---------------LAKMR----DP---DCAKAW 96 (410)
Q Consensus 41 ~~v~~llks~~i~~VRlY--~~d~~vL~A~~~tgi~V~lGv~n~~---------------l~~~a----~~---~~A~~w 96 (410)
.+++++||..|++.||+- -.++..+.++...||-|+.=++... ..... ++ +.....
T Consensus 316 ~~d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (604)
T PRK10150 316 VHDHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQA 395 (604)
T ss_pred HHHHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 456789999999999993 3357899999999998875443210 00110 11 122233
Q ss_pred HHHHhhhhCCCCcEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccccc
Q 015263 97 IKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKD 176 (410)
Q Consensus 97 v~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~d 176 (410)
+++.|..+..--.|..=.+|||.-... ...-..++.+.+.+++.- ..=+|+.+..+. . +|.
T Consensus 396 ~~~mv~r~~NHPSIi~Ws~gNE~~~~~-----~~~~~~~~~l~~~~k~~D--ptR~vt~~~~~~---~--~~~------- 456 (604)
T PRK10150 396 IRELIARDKNHPSVVMWSIANEPASRE-----QGAREYFAPLAELTRKLD--PTRPVTCVNVMF---A--TPD------- 456 (604)
T ss_pred HHHHHHhccCCceEEEEeeccCCCccc-----hhHHHHHHHHHHHHHhhC--CCCceEEEeccc---C--Ccc-------
Confidence 555666554334688999999964321 122233444444444433 333566654211 0 110
Q ss_pred chhhhhhhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCCCC
Q 015263 177 LVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKK 256 (410)
Q Consensus 177 l~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~~~ 256 (410)
...+.+++|+ +..|.|+=|-.. +.+. ......++.+++.. .++ + +
T Consensus 457 -~~~~~~~~Dv-------~~~N~Y~~wy~~--~~~~-------------------~~~~~~~~~~~~~~---~~~--~-~ 501 (604)
T PRK10150 457 -TDTVSDLVDV-------LCLNRYYGWYVD--SGDL-------------------ETAEKVLEKELLAW---QEK--L-H 501 (604)
T ss_pred -cccccCcccE-------EEEcccceecCC--CCCH-------------------HHHHHHHHHHHHHH---HHh--c-C
Confidence 0123456788 888987633211 0000 00111222222221 111 2 7
Q ss_pred ccEEEeeeccCCCC----CCCCCCCCHHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEEEeecCCCCCCC--CCCCcee
Q 015263 257 LLLHISETGWPSKG----DEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLKPGP--TSERNYG 330 (410)
Q Consensus 257 ~~VvVsETGWPS~G----~~~~~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE~wK~g~--~~E~~wG 330 (410)
||++++|.|+.+.- ..+ ..-|.+.|..|++...+.+.+ +|. -.-.|+..+||-....|. .-..+.|
T Consensus 502 kP~~isEyg~~~~~~~h~~~~-~~~~ee~q~~~~~~~~~~~~~------~p~-~~G~~iW~~~D~~~~~g~~~~~g~~~G 573 (604)
T PRK10150 502 KPIIITEYGADTLAGLHSMYD-DMWSEEYQCAFLDMYHRVFDR------VPA-VVGEQVWNFADFATSQGILRVGGNKKG 573 (604)
T ss_pred CCEEEEccCCccccccccCCC-CCCCHHHHHHHHHHHHHHHhc------CCc-eEEEEEEeeeccCCCCCCcccCCCcce
Confidence 99999999976632 111 234688899999988777653 343 367899999996554331 1234789
Q ss_pred eecCCCCeeeee
Q 015263 331 LFKPDGSPAYSL 342 (410)
Q Consensus 331 Lf~~dg~~ky~l 342 (410)
|++.||+||-..
T Consensus 574 l~~~dr~~k~~~ 585 (604)
T PRK10150 574 IFTRDRQPKSAA 585 (604)
T ss_pred eEcCCCCChHHH
Confidence 999999999754
No 8
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.70 E-value=0.0042 Score=60.31 Aligned_cols=214 Identities=17% Similarity=0.150 Sum_probs=112.9
Q ss_pred HHHHHHHhcCCeEEE--EeccccccccC---CH----HHHHHHHHHHhhhhCCCCcEEEEEecccccccCCC----Cchh
Q 015263 63 KVLKAFANTGVEFTV--SLGNEYLAKMR---DP----DCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDT----SLSG 129 (410)
Q Consensus 63 ~vL~A~~~tgi~V~l--Gv~n~~l~~~a---~~----~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~----s~~~ 129 (410)
.+++.+++.||+|-- =+|....+... +. ..-..++++.+..| . ..|..+-|.||.+..+.. +...
T Consensus 20 ~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry-~-g~i~~wdV~NE~~~~~~~~~~~~~w~ 97 (254)
T smart00633 20 AIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRY-K-GKIYAWDVVNEALHDNGSGLRRSVWY 97 (254)
T ss_pred HHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHh-C-CcceEEEEeeecccCCCcccccchHH
Confidence 355666777777621 14544333321 11 22344555555555 3 469999999999864311 1122
Q ss_pred hHH--HHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhhhhcCCce-eeecCCCcccC
Q 015263 130 CLL--PAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPF-LINAYPYFAYK 206 (410)
Q Consensus 130 ~Ll--~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~-~vNiyPyf~~~ 206 (410)
..+ .+++...++.+++.= ++++-.-+ .++.. ++ .-...+..+++-|.+.|.|| +|.+...|...
T Consensus 98 ~~~G~~~i~~af~~ar~~~P--~a~l~~Nd-y~~~~---~~-------~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~ 164 (254)
T smart00633 98 QILGEDYIEKAFRYAREADP--DAKLFYND-YNTEE---PN-------AKRQAIYELVKKLKAKGVPIDGIGLQSHLSLG 164 (254)
T ss_pred HhcChHHHHHHHHHHHHhCC--CCEEEEec-cCCcC---cc-------HHHHHHHHHHHHHHHCCCccceeeeeeeecCC
Confidence 222 344444444444432 34443322 11211 11 00123455666777777764 22222211110
Q ss_pred CCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHH
Q 015263 207 GSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETGWPSKGDEDEAGATPENAKKYN 286 (410)
Q Consensus 207 ~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~~~~~VvVsETGWPS~G~~~~~~As~~Na~~y~ 286 (410)
.| + ++.+...|++++--++||+|||.+-|..+ +++.|+.++
T Consensus 165 -~~--------------------------~-----~~~~~~~l~~~~~~g~pi~iTE~dv~~~~-------~~~~qA~~~ 205 (254)
T smart00633 165 -SP--------------------------N-----IAEIRAALDRFASLGLEIQITELDISGYP-------NPQAQAADY 205 (254)
T ss_pred -CC--------------------------C-----HHHHHHHHHHHHHcCCceEEEEeecCCCC-------cHHHHHHHH
Confidence 00 0 11122233333333699999999988743 347899999
Q ss_pred HHHHHHHHccCCCCCCCCCCccEEEEEeecC-CCCCCCCCCCceeeecCCCCeeee
Q 015263 287 GNLIKLISSKKGTPMRPNCDLNIYVFALFNE-NLKPGPTSERNYGLFKPDGSPAYS 341 (410)
Q Consensus 287 ~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE-~wK~g~~~E~~wGLf~~dg~~ky~ 341 (410)
++++..+.+. | . ...+++..+.|. .|.++ .+-|||+.|++||-.
T Consensus 206 ~~~l~~~~~~---p---~-v~gi~~Wg~~d~~~W~~~----~~~~L~d~~~~~kpa 250 (254)
T smart00633 206 EEVFKACLAH---P---A-VTGVTVWGVTDKYSWLDG----GAPLLFDANYQPKPA 250 (254)
T ss_pred HHHHHHHHcC---C---C-eeEEEEeCCccCCcccCC----CCceeECCCCCCChh
Confidence 9999998752 2 1 234666666653 45543 467999999999854
No 9
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.17 E-value=0.012 Score=56.89 Aligned_cols=190 Identities=18% Similarity=0.170 Sum_probs=102.9
Q ss_pred CeEEEEeccccccccCCHHHHHHHHHHHhhhhCCCCcEEEEEecccccccC--CCCchhhHHHHHHHHHHHHHhCCCCCC
Q 015263 73 VEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFN--DTSLSGCLLPAMESVHTALVNLGLDKQ 150 (410)
Q Consensus 73 i~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~--~~s~~~~Ll~am~~vr~aL~~~Gl~~~ 150 (410)
++.+-.+|.....+ ..|++ +|+.. ...++.|..=||.=... +.+ +++.+...+++.+.|+.. .
T Consensus 39 ~efvPmlwg~~~~~-------~~~~~-~v~~~--~~~~~~ll~fNEPD~~~qsn~~-p~~aa~~w~~~~~~~~~~----~ 103 (239)
T PF11790_consen 39 LEFVPMLWGPGSDD-------DDWLA-NVQNA--HPGSKHLLGFNEPDLPGQSNMS-PEEAAALWKQYMNPLRSP----G 103 (239)
T ss_pred eeEeecccCCCCCc-------hHHHH-HHHhh--ccCccceeeecCCCCCCCCCCC-HHHHHHHHHHHHhHhhcC----C
Confidence 67777777643221 12322 33332 34688899889986543 334 677777777777777642 4
Q ss_pred eEEeeeeecccccccCCCCCccccccchhhhh--hhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCCCcccC
Q 015263 151 VSVTTAHSLGVLGSSYPPSAGAFRKDLVDCIT--PILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDP 228 (410)
Q Consensus 151 I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~--~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~ 228 (410)
+++..+..-. ....+|....+-++...... --+|| +.||.| ..++
T Consensus 104 ~~l~sPa~~~--~~~~~~~g~~Wl~~F~~~~~~~~~~D~-------iavH~Y-----~~~~------------------- 150 (239)
T PF11790_consen 104 VKLGSPAVAF--TNGGTPGGLDWLSQFLSACARGCRVDF-------IAVHWY-----GGDA------------------- 150 (239)
T ss_pred cEEECCeecc--cCCCCCCccHHHHHHHHhcccCCCccE-------EEEecC-----CcCH-------------------
Confidence 5665543210 00001122222222211111 13455 444444 1100
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHccCCCCCCCCCCcc
Q 015263 229 ASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETGWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLN 308 (410)
Q Consensus 229 ~~~~~y~nl~daqvDav~~Al~~~g~~~~~VvVsETGWPS~G~~~~~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~ 308 (410)
.-+...|+.++ ++.| |||+|||.|+...+ ...+.+.++.|.+..+..+.+. |. .-.
T Consensus 151 -------~~~~~~i~~~~---~~~~---kPIWITEf~~~~~~----~~~~~~~~~~fl~~~~~~ld~~------~~-Ver 206 (239)
T PF11790_consen 151 -------DDFKDYIDDLH---NRYG---KPIWITEFGCWNGG----SQGSDEQQASFLRQALPWLDSQ------PY-VER 206 (239)
T ss_pred -------HHHHHHHHHHH---HHhC---CCEEEEeecccCCC----CCCCHHHHHHHHHHHHHHHhcC------CC-eeE
Confidence 11223344443 3333 99999999987722 3578899999999999998642 22 357
Q ss_pred EEEEEeecCCCCCCCCCCCceeeecCCCCe
Q 015263 309 IYVFALFNENLKPGPTSERNYGLFKPDGSP 338 (410)
Q Consensus 309 ~y~F~~FDE~wK~g~~~E~~wGLf~~dg~~ 338 (410)
++||. |...+. ....+-.|++.||++
T Consensus 207 yawF~-~~~~~~---~~~~~~~L~~~~G~l 232 (239)
T PF11790_consen 207 YAWFG-FMNDGS---GVNPNSALLDADGSL 232 (239)
T ss_pred EEecc-cccccC---CCccccccccCCCCc
Confidence 88888 333322 345666777877754
No 10
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.91 E-value=0.079 Score=52.36 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=58.0
Q ss_pred ceeEEecCCCCCC---CCH---HHHHHHHhhcCCCEEEecc--CChHHHHHHHhcCCeEEEEeccccc---cc------c
Q 015263 25 SIGINYGQIANNL---PTP---ENVIPLVKSIGATRVKLYD--ADPKVLKAFANTGVEFTVSLGNEYL---AK------M 87 (410)
Q Consensus 25 ~~GInYg~~~~nl---ps~---~~v~~llks~~i~~VRlY~--~d~~vL~A~~~tgi~V~lGv~n~~l---~~------~ 87 (410)
..|+|+......+ .+. .++++++|+.|++.||+.. .++..+.++...||-|+.-++.... .. .
T Consensus 17 l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~~~ 96 (298)
T PF02836_consen 17 LRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCNYD 96 (298)
T ss_dssp EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTSCT
T ss_pred EEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccccC
Confidence 3589988654332 333 3567899999999999963 4589999999999999988765211 00 0
Q ss_pred -CCH---HHHHHHHHHHhhhhCCCCcEEEEEecccc
Q 015263 88 -RDP---DCAKAWIKSNVQAYLPATKITCITVGNEV 119 (410)
Q Consensus 88 -a~~---~~A~~wv~~~V~~~~p~~~I~~I~VGNEv 119 (410)
.++ +.+...+++.|..+.---.|..=.+|||.
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 97 ADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 122 23345566667665433358888899998
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.61 E-value=0.031 Score=58.92 Aligned_cols=117 Identities=16% Similarity=0.179 Sum_probs=66.3
Q ss_pred HHHHHHHHhhcCCCEEEec--------c-----CC-------hHHHHHHHhcCCeEEEEecccccccc-------CCHHH
Q 015263 40 PENVIPLVKSIGATRVKLY--------D-----AD-------PKVLKAFANTGVEFTVSLGNEYLAKM-------RDPDC 92 (410)
Q Consensus 40 ~~~v~~llks~~i~~VRlY--------~-----~d-------~~vL~A~~~tgi~V~lGv~n~~l~~~-------a~~~~ 92 (410)
.+++++|||++|++..|+= + .| .+++..+.+.||+.+|.+.--+++.. .+++.
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 5799999999999999864 1 12 36889999999999999975444321 12222
Q ss_pred HH---HHHHHHhhhhCCCCcEEEEEeccccccc-------CC-----CC------chhhHHHHHHHHHHHHHhCCCCCCe
Q 015263 93 AK---AWIKSNVQAYLPATKITCITVGNEVLTF-------ND-----TS------LSGCLLPAMESVHTALVNLGLDKQV 151 (410)
Q Consensus 93 A~---~wv~~~V~~~~p~~~I~~I~VGNEvl~~-------~~-----~s------~~~~Ll~am~~vr~aL~~~Gl~~~I 151 (410)
+. ...+.-++.+ .++|+.-+.=||...- +. .+ ....++-|-..+.+++++..- +.
T Consensus 140 ~~~F~~Ya~~~~~~~--gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~--~~ 215 (455)
T PF00232_consen 140 VDWFARYAEFVFERF--GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYP--DG 215 (455)
T ss_dssp HHHHHHHHHHHHHHH--TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTC--TS
T ss_pred HHHHHHHHHHHHHHh--CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhccc--ce
Confidence 21 1122222333 3578888888998542 10 01 012355555555666666664 34
Q ss_pred EEeeeeecc
Q 015263 152 SVTTAHSLG 160 (410)
Q Consensus 152 ~VsTa~~~~ 160 (410)
+|+.+++..
T Consensus 216 ~IGi~~~~~ 224 (455)
T PF00232_consen 216 KIGIALNFS 224 (455)
T ss_dssp EEEEEEEEE
T ss_pred EEecccccc
Confidence 666655443
No 12
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=96.40 E-value=0.34 Score=49.62 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=53.0
Q ss_pred CHHHHHHHHhhcCCCEEEeccC-------C---------hHHHHHHHhcCCeEEEEecccccc--------c--------
Q 015263 39 TPENVIPLVKSIGATRVKLYDA-------D---------PKVLKAFANTGVEFTVSLGNEYLA--------K-------- 86 (410)
Q Consensus 39 s~~~v~~llks~~i~~VRlY~~-------d---------~~vL~A~~~tgi~V~lGv~n~~l~--------~-------- 86 (410)
..++++++||..||+.|||-.. . ..+|..+++.||+|+|+++....+ .
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g 90 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADG 90 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTT
T ss_pred HHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCC
Confidence 3578999999999999997432 1 368888899999999999633110 0
Q ss_pred ------------cCCH---HHHHHHHHHHhhhhCCCCcEEEEEecccccc
Q 015263 87 ------------MRDP---DCAKAWIKSNVQAYLPATKITCITVGNEVLT 121 (410)
Q Consensus 87 ------------~a~~---~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~ 121 (410)
..++ +.+...+++-+..|-....|.++-|.||.-.
T Consensus 91 ~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 91 RRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp SBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 0111 2334444444455544457999999999643
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=96.15 E-value=0.71 Score=48.48 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCCCEEEec--------c----CC-------hHHHHHHHhcCCeEEEEeccccccc-------cCCHHHH
Q 015263 40 PENVIPLVKSIGATRVKLY--------D----AD-------PKVLKAFANTGVEFTVSLGNEYLAK-------MRDPDCA 93 (410)
Q Consensus 40 ~~~v~~llks~~i~~VRlY--------~----~d-------~~vL~A~~~tgi~V~lGv~n~~l~~-------~a~~~~A 93 (410)
.++++++||.+|++.+|+= + .| .+++..+.+.||+++|.+.--+++. ..+++..
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~ 135 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTA 135 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHH
Confidence 5789999999999999862 1 12 3688999999999999995433322 2233222
Q ss_pred ---HHHHHHHhhhhCCCCcEEEEEeccccc
Q 015263 94 ---KAWIKSNVQAYLPATKITCITVGNEVL 120 (410)
Q Consensus 94 ---~~wv~~~V~~~~p~~~I~~I~VGNEvl 120 (410)
....+.-+..| .+ .|+..+.=||..
T Consensus 136 ~~f~~ya~~~~~~~-~d-~v~~w~t~NEp~ 163 (427)
T TIGR03356 136 EWFAEYAAVVAERL-GD-RVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHHh-CC-cCCEEEEecCcc
Confidence 22222223333 33 666666667764
No 14
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=91.62 E-value=1.6 Score=44.78 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=77.2
Q ss_pred CCCEEEecc-CChHHHHHHHhcCCeEEEEeccccccccCCHHHHHHHHHHHhhhhCCCCcEEEEEecccccccCCCCchh
Q 015263 51 GATRVKLYD-ADPKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSG 129 (410)
Q Consensus 51 ~i~~VRlY~-~d~~vL~A~~~tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~ 129 (410)
.++.|-+|+ .|++++..+.+.|++|++..-.. .+.++++.....++++.| .++......+|-+==|-....+....+
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~~l~~~~~R~~fi~siv-~~~~~~gfDGIdIDwE~p~~~~~~d~~ 132 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LEQISNPTYRTQWIQQKV-ELAKSQFMDGINIDIEQPITKGSPEYY 132 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HHHcCCHHHHHHHHHHHH-HHHHHhCCCeEEEcccCCCCCCcchHH
Confidence 367888885 46899999999999999864321 233455554445554433 232223455665544443221112246
Q ss_pred hHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccc-ccchhhhhhhhhhhhhcCCceeeecCCCc
Q 015263 130 CLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFR-KDLVDCITPILDFHVKTASPFLINAYPYF 203 (410)
Q Consensus 130 ~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~-~dl~~~l~~~ldfL~~t~sp~~vNiyPyf 203 (410)
.+...|+++|++|++.+..-.+.|+.+ +. |+....+ -|+ +.|.+.+|| +.+-.|=|.
T Consensus 133 ~~t~llkelr~~l~~~~~~~~Lsvav~--~~-------p~~~~~~~yd~-~~l~~~vD~-------v~lMtYD~h 190 (358)
T cd02875 133 ALTELVKETTKAFKKENPGYQISFDVA--WS-------PSCIDKRCYDY-TGIADASDF-------LVVMDYDEQ 190 (358)
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEEEe--cC-------cccccccccCH-HHHHhhCCE-------eeEEeeccc
Confidence 788999999999998764323333332 21 1111111 122 467889999 667777553
No 15
>PRK09936 hypothetical protein; Provisional
Probab=90.49 E-value=4.4 Score=40.67 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhhhccccCceeEEecCCCCCC--C--CHHHHHHHHhhcCCCEEEec-----cCC--------hHHHHHH
Q 015263 6 SRLLILFISGLLSHVKIGTSIGINYGQIANNL--P--TPENVIPLVKSIGATRVKLY-----DAD--------PKVLKAF 68 (410)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~GInYg~~~~nl--p--s~~~v~~llks~~i~~VRlY-----~~d--------~~vL~A~ 68 (410)
.||++.+|..+++...+.+..|+=|-|...|. + ..++..+.++..|++.+=+= +.| .+.|+++
T Consensus 2 ~~~~~~~l~~l~~~~~~~a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A 81 (296)
T PRK09936 2 RKFIFVLLTLLLVSPFSQAMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAA 81 (296)
T ss_pred hhHHHHHHHHHHcCchhhccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHH
Confidence 35666655544444323235678899987764 2 35677888888999766442 223 5788899
Q ss_pred HhcCCeEEEEecccc
Q 015263 69 ANTGVEFTVSLGNEY 83 (410)
Q Consensus 69 ~~tgi~V~lGv~n~~ 83 (410)
.+.||+|.||++-|.
T Consensus 82 ~~~Gl~v~vGL~~Dp 96 (296)
T PRK09936 82 QQAGLKLVVGLYADP 96 (296)
T ss_pred HHcCCEEEEcccCCh
Confidence 999999999999764
No 16
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=76.72 E-value=12 Score=34.35 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=46.2
Q ss_pred HHHHHHHhc--CCeEEEEeccccccc---c-CCHHHHHHHHHHHhhhhCCCCcEEEEEecccccccCCCCchhhHHHHHH
Q 015263 63 KVLKAFANT--GVEFTVSLGNEYLAK---M-RDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAME 136 (410)
Q Consensus 63 ~vL~A~~~t--gi~V~lGv~n~~l~~---~-a~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~ 136 (410)
.-++.+++. |+||++.+....... + ++++...+. .+++..+.....+.+|-+==|.....+......++..|+
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f-~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~ 131 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAF-ANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLR 131 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHH-HHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHH
Confidence 345556654 999999987644322 2 244333332 233333332234555555334332211011468999999
Q ss_pred HHHHHHHhCCC
Q 015263 137 SVHTALVNLGL 147 (410)
Q Consensus 137 ~vr~aL~~~Gl 147 (410)
.+|++|.+.++
T Consensus 132 ~lr~~l~~~~~ 142 (210)
T cd00598 132 ELRSALGAANY 142 (210)
T ss_pred HHHHHhcccCc
Confidence 99999987654
No 17
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=76.02 E-value=9.3 Score=37.91 Aligned_cols=82 Identities=12% Similarity=0.148 Sum_probs=49.8
Q ss_pred hHHHHHHHhcCCeEEEEecccc--------cccc-CCHHHHHHHHHHHhhhhCCCCcEEEEEecccccccCCCCchhhHH
Q 015263 62 PKVLKAFANTGVEFTVSLGNEY--------LAKM-RDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLL 132 (410)
Q Consensus 62 ~~vL~A~~~tgi~V~lGv~n~~--------l~~~-a~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll 132 (410)
+++++++++.++||++.|.+.. ...+ +++..... ..+++..++..-.+.+|-+-=|.+... .....+
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~-fi~~iv~~l~~~~~DGidiDwE~~~~~---d~~~~~ 123 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQR-LINNILALAKKYGYDGVNIDFENVPPE---DREAYT 123 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHH-HHHHHHHHHHHhCCCcEEEecccCCHH---HHHHHH
Confidence 6788888888999999887642 1122 24432222 233444333222455666555554322 145688
Q ss_pred HHHHHHHHHHHhCCC
Q 015263 133 PAMESVHTALVNLGL 147 (410)
Q Consensus 133 ~am~~vr~aL~~~Gl 147 (410)
..++.+|.+|++.|+
T Consensus 124 ~fl~~lr~~l~~~~~ 138 (313)
T cd02874 124 QFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHhhhcCc
Confidence 999999999987765
No 18
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=67.82 E-value=5.9 Score=36.38 Aligned_cols=39 Identities=15% Similarity=0.375 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEe
Q 015263 41 ENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSL 79 (410)
Q Consensus 41 ~~v~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~lGv 79 (410)
.--.++|+.+|+++||+.+.+|.-+.++.+.||+|.=-+
T Consensus 129 gigaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 129 GIGAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp HHHHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEe
Confidence 344789999999999999999999999999999986443
No 19
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=67.74 E-value=19 Score=27.23 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=36.2
Q ss_pred CCHHHHHHHHhhcCCCEEEeccCC-----hHHHHHHHhcCCeEEEEecc
Q 015263 38 PTPENVIPLVKSIGATRVKLYDAD-----PKVLKAFANTGVEFTVSLGN 81 (410)
Q Consensus 38 ps~~~v~~llks~~i~~VRlY~~d-----~~vL~A~~~tgi~V~lGv~n 81 (410)
-++++.++..+.+|++.|=+=|-+ +...+.+++.|++++.|+..
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEEE
Confidence 467899999999999999888776 45666777899999999864
No 20
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=67.39 E-value=43 Score=39.36 Aligned_cols=95 Identities=18% Similarity=0.134 Sum_probs=59.4
Q ss_pred eeEEecCCCCC---CCCH---HHHHHHHhhcCCCEEEecc--CChHHHHHHHhcCCeEEEEeccccc-----cccC-CH-
Q 015263 26 IGINYGQIANN---LPTP---ENVIPLVKSIGATRVKLYD--ADPKVLKAFANTGVEFTVSLGNEYL-----AKMR-DP- 90 (410)
Q Consensus 26 ~GInYg~~~~n---lps~---~~v~~llks~~i~~VRlY~--~d~~vL~A~~~tgi~V~lGv~n~~l-----~~~a-~~- 90 (410)
.|+|+-..... -.++ .++++++|..|++.||+-. .++..++.|...||-|+--++.... ..+. ++
T Consensus 353 rGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp~ 432 (1027)
T PRK09525 353 RGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDPR 432 (1027)
T ss_pred EEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCHH
Confidence 47876543222 1333 4578899999999999943 3578999999999988876543211 1111 22
Q ss_pred --HHHHHHHHHHhhhhCCCCcEEEEEeccccc
Q 015263 91 --DCAKAWIKSNVQAYLPATKITCITVGNEVL 120 (410)
Q Consensus 91 --~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl 120 (410)
++....+++.|.+...--.|..=++|||.-
T Consensus 433 ~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 433 WLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 222333455555543334688899999963
No 21
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=67.37 E-value=27 Score=33.63 Aligned_cols=80 Identities=23% Similarity=0.248 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCeEEEEeccccccc---c-CCHHHHHHHHHHHhhhhCCCCcEEEEEecccccccCCCCchhhHHHHHHHH
Q 015263 63 KVLKAFANTGVEFTVSLGNEYLAK---M-RDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESV 138 (410)
Q Consensus 63 ~vL~A~~~tgi~V~lGv~n~~l~~---~-a~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~v 138 (410)
..++++++.|+||++.|....... + +++...+.+++ ++..++......+|-+==|-... . .......++++
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~-~lv~~~~~~~~DGIdiDwE~~~~---~-~~~~~~fv~~L 124 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVD-KIINYVVSYNLDGIDVDLEGPDV---T-FGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHH-HHHHHHHHhCCCceeEEeeccCc---c-HhHHHHHHHHH
Confidence 455677778999999887543221 2 25444333433 33332222234455554444321 1 35677889999
Q ss_pred HHHHHhCCC
Q 015263 139 HTALVNLGL 147 (410)
Q Consensus 139 r~aL~~~Gl 147 (410)
|++|++.|+
T Consensus 125 r~~l~~~~~ 133 (253)
T cd06545 125 YAALKKEGK 133 (253)
T ss_pred HHHHhhcCc
Confidence 999987765
No 22
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=64.87 E-value=83 Score=32.64 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCcccCC
Q 015263 128 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKG 207 (410)
Q Consensus 128 ~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~ 207 (410)
.+....+++.+|+.. . .+.+++..-. .+| .|-.+.+...+||+.+.+ +-.+++|||--+-.
T Consensus 272 ~~~~~~~v~~l~~~~--~----gi~i~~~~Iv-----G~P-------gET~ed~~~tl~~i~~~~-~~~~~~~~~sp~pG 332 (414)
T TIGR01579 272 RDDFLKLVNKLRSVR--P----DYAFGTDIIV-----GFP-------GESEEDFQETLRMVKEIE-FSHLHIFPYSARPG 332 (414)
T ss_pred HHHHHHHHHHHHHhC--C----CCeeeeeEEE-----ECC-------CCCHHHHHHHHHHHHhCC-CCEEEeeecCCCCC
Confidence 466777777777632 2 2455554322 244 122345667788887765 34678887765544
Q ss_pred CCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCCCCccEEEee
Q 015263 208 SPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISE 263 (410)
Q Consensus 208 ~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~~~~~VvVsE 263 (410)
.|- |. +. ..+.......++..+.+.+-.......++.-....+|+|.|
T Consensus 333 T~~-----~~-~~--~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~vlve~ 380 (414)
T TIGR01579 333 TPA-----ST-MK--DKVPETIKKERVKRLKELAEKNYQEFLKKNIGKELEVLVEK 380 (414)
T ss_pred Cch-----hh-CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 431 11 11 01111111234444444444433444444323557888864
No 23
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.89 E-value=23 Score=36.81 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=30.6
Q ss_pred cCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHccC
Q 015263 252 LGYKKLLLHISETGWPSKGDEDE---AGATPENAKKYNGNLIKLISSKK 297 (410)
Q Consensus 252 ~g~~~~~VvVsETGWPS~G~~~~---~~As~~Na~~y~~~li~~~~~~~ 297 (410)
.|++..+|+.| |||.|.-.+ ...|..-++.-+.++++.+.+.+
T Consensus 143 ~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~ 188 (377)
T COG4782 143 SGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATDK 188 (377)
T ss_pred cCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCC
Confidence 46677888886 999998633 34566666777777888877543
No 24
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=62.65 E-value=15 Score=33.72 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=33.1
Q ss_pred HHHHHHHHhhcCCCEEEe----------ccC------------C--hHHHHHHHhcCCeEEEEeccc
Q 015263 40 PENVIPLVKSIGATRVKL----------YDA------------D--PKVLKAFANTGVEFTVSLGNE 82 (410)
Q Consensus 40 ~~~v~~llks~~i~~VRl----------Y~~------------d--~~vL~A~~~tgi~V~lGv~n~ 82 (410)
.++.++.||..||+.|=+ |.+ | ..+|+++.+.||||++|++.+
T Consensus 22 W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~ 88 (166)
T PF14488_consen 22 WREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD 88 (166)
T ss_pred HHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC
Confidence 578889999999987722 222 1 368899999999999999964
No 25
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=60.23 E-value=55 Score=38.45 Aligned_cols=95 Identities=20% Similarity=0.195 Sum_probs=58.6
Q ss_pred eeEEecCCCCCC---CCH---HHHHHHHhhcCCCEEEecc--CChHHHHHHHhcCCeEEEEeccccc--------cccC-
Q 015263 26 IGINYGQIANNL---PTP---ENVIPLVKSIGATRVKLYD--ADPKVLKAFANTGVEFTVSLGNEYL--------AKMR- 88 (410)
Q Consensus 26 ~GInYg~~~~nl---ps~---~~v~~llks~~i~~VRlY~--~d~~vL~A~~~tgi~V~lGv~n~~l--------~~~a- 88 (410)
.|+|+-.....+ .++ .+++++||+.|++.||+-- .++..+.++...||-|+--+..... ....
T Consensus 337 rGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~ 416 (1021)
T PRK10340 337 HGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITD 416 (1021)
T ss_pred EEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccC
Confidence 478764332211 233 4568899999999999863 3478899999999988775432110 1112
Q ss_pred CH---HHHHHHHHHHhhhhCCCCcEEEEEeccccc
Q 015263 89 DP---DCAKAWIKSNVQAYLPATKITCITVGNEVL 120 (410)
Q Consensus 89 ~~---~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl 120 (410)
++ +...+.+++.|.+...--.|..=++|||.-
T Consensus 417 ~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 417 DPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 22 122334556666553334688888999974
No 26
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=58.56 E-value=22 Score=37.97 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=36.6
Q ss_pred CHHHHHHHHhhcCCCEEEe-------c--c---CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015263 39 TPENVIPLVKSIGATRVKL-------Y--D---AD-------PKVLKAFANTGVEFTVSLGNEYLA 85 (410)
Q Consensus 39 s~~~v~~llks~~i~~VRl-------Y--~---~d-------~~vL~A~~~tgi~V~lGv~n~~l~ 85 (410)
..+|+++|||++|++..|+ + + .+ .+++.++.+.||+-+|.++--+++
T Consensus 55 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 120 (469)
T PRK13511 55 RYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTP 120 (469)
T ss_pred hhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCc
Confidence 3689999999999887775 2 1 12 368999999999999999855544
No 27
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=56.23 E-value=18 Score=33.80 Aligned_cols=33 Identities=18% Similarity=0.566 Sum_probs=30.4
Q ss_pred HHHHhhcCCCEEEeccCChHHHHHHHhcCCeEE
Q 015263 44 IPLVKSIGATRVKLYDADPKVLKAFANTGVEFT 76 (410)
Q Consensus 44 ~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~ 76 (410)
.++|+.+|+++||+.+..+.=+.++.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998878889999999986
No 28
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=55.63 E-value=67 Score=34.73 Aligned_cols=185 Identities=17% Similarity=0.169 Sum_probs=98.2
Q ss_pred HHHHHHhhhhCCCCcEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccc
Q 015263 95 AWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFR 174 (410)
Q Consensus 95 ~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~ 174 (410)
..|..-|.+|--+..|.+-..-||.+.+.+.+ ...++...+.+.+-++..+=+..|.|+ |...-|..--|+
T Consensus 124 kyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s-~N~f~~w~~emy~yiK~ldd~hlvsvG--D~~sp~~~~~py------ 194 (587)
T COG3934 124 KYVEDLVKPYKLDPTIAGWALRNEPLVEAPIS-VNNFWDWSGEMYAYIKWLDDGHLVSVG--DPASPWPQYAPY------ 194 (587)
T ss_pred HHHHHHhhhhccChHHHHHHhcCCccccccCC-hhHHHHHHHHHHHHhhccCCCCeeecC--CcCCcccccCCc------
Confidence 34555555664445677778889987766655 788888888888888776644334443 333223221122
Q ss_pred ccchhhhhhhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCC
Q 015263 175 KDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGY 254 (410)
Q Consensus 175 ~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~ 254 (410)
-.+..+|| -.-|+||+|.. +| -+...+..+.| |-+.. ..+|
T Consensus 195 -----N~r~~vDy-------a~~hLY~hyd~--sl-~~r~s~~yg~~------------~l~i~-----------~~~g- 235 (587)
T COG3934 195 -----NARFYVDY-------AANHLYRHYDT--SL-VSRVSTVYGKP------------YLDIP-----------TIMG- 235 (587)
T ss_pred -----ccceeecc-------ccchhhhhccC--Ch-hheeeeeecch------------hhccc-----------hhcc-
Confidence 23446777 56789997653 33 01111111111 11110 1122
Q ss_pred CCccEEEeeeccCCCCCCCCCCCCHHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEEEeecCCCC--CCC--CCCCcee
Q 015263 255 KKLLLHISETGWPSKGDEDEAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNENLK--PGP--TSERNYG 330 (410)
Q Consensus 255 ~~~~VvVsETGWPS~G~~~~~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE~wK--~g~--~~E~~wG 330 (410)
-+||+.-|-|-|++=..+ |.+.|.-. +..+....| ...-+..|+=|-+--- +.. .-|-.||
T Consensus 236 -~~pV~leefGfsta~g~e-------~s~ayfiw-~~lal~~gg------dGaLiwclsdf~~gsdd~ey~w~p~el~fg 300 (587)
T COG3934 236 -WQPVNLEEFGFSTAFGQE-------NSPAYFIW-IRLALDTGG------DGALIWCLSDFHLGSDDSEYTWGPMELEFG 300 (587)
T ss_pred -cceeeccccCCccccccc-------ccchhhhh-hhhHHhhcC------CceEEEEecCCccCCCCCCCccccccceee
Confidence 389999999999974322 22222221 112221112 1123444444432111 111 3588899
Q ss_pred eecCCCCeeeee
Q 015263 331 LFKPDGSPAYSL 342 (410)
Q Consensus 331 Lf~~dg~~ky~l 342 (410)
|.+.|+.+|++.
T Consensus 301 iIradgpek~~a 312 (587)
T COG3934 301 IIRADGPEKIDA 312 (587)
T ss_pred eecCCCchhhhH
Confidence 999999999965
No 29
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=55.54 E-value=84 Score=32.87 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCc
Q 015263 128 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYF 203 (410)
Q Consensus 128 ~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf 203 (410)
.+.++..|+.+|.+|++.++. +.++.+.... +...| |+ +.|.+.+|| +.+-.|=|+
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~~--ls~av~~~~~--------~~~~~--d~-~~l~~~vD~-------inlMtYD~~ 223 (413)
T cd02873 168 KEQFTALVRELKNALRPDGLL--LTLTVLPHVN--------STWYF--DV-PAIANNVDF-------VNLATFDFL 223 (413)
T ss_pred HHHHHHHHHHHHHHhcccCcE--EEEEecCCch--------hcccc--CH-HHHhhcCCE-------EEEEEeccc
Confidence 456888999999999887752 3333211100 00111 22 568889999 566666554
No 30
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=55.51 E-value=19 Score=33.90 Aligned_cols=33 Identities=24% Similarity=0.626 Sum_probs=30.5
Q ss_pred HHHHhhcCCCEEEeccCChHHHHHHHhcCCeEE
Q 015263 44 IPLVKSIGATRVKLYDADPKVLKAFANTGVEFT 76 (410)
Q Consensus 44 ~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~ 76 (410)
.++|+.+|+++||+.+..+.-..++.+.||+|.
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~ 166 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIV 166 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 789999999999999998877889999999997
No 31
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=55.32 E-value=50 Score=33.66 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCeEEEEeccccccc-cCCHHHHHHHHHHHhhhhC-----CCCcEEEEEecccccccC---CCCchhhHHH
Q 015263 63 KVLKAFANTGVEFTVSLGNEYLAK-MRDPDCAKAWIKSNVQAYL-----PATKITCITVGNEVLTFN---DTSLSGCLLP 133 (410)
Q Consensus 63 ~vL~A~~~tgi~V~lGv~n~~l~~-~a~~~~A~~wv~~~V~~~~-----p~~~I~~I~VGNEvl~~~---~~s~~~~Ll~ 133 (410)
.+-+-+.++|.+|+.|+.--.-.. ..+....-.|--+|.+.++ ..-+|.+-=.|||.-..+ ..+ +.++..
T Consensus 113 ~l~~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~-a~qyak 191 (319)
T PF03662_consen 113 ELNNFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVS-AEQYAK 191 (319)
T ss_dssp HHHHHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT---HHHHHH
T ss_pred HHHHHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccC-HHHHHH
Confidence 344455689999999986311000 0011223467777765543 124688888999975432 223 678888
Q ss_pred HHHHHHHHHHhC
Q 015263 134 AMESVHTALVNL 145 (410)
Q Consensus 134 am~~vr~aL~~~ 145 (410)
-...+|+.|++.
T Consensus 192 D~~~Lr~il~~i 203 (319)
T PF03662_consen 192 DFIQLRKILNEI 203 (319)
T ss_dssp HH---HHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877753
No 32
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=54.99 E-value=2.8e+02 Score=29.17 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCeEEEEecccccc----------------ccC--CHHHHHHHHHHHhhhhC-CCCcEEEEEecccccccC
Q 015263 63 KVLKAFANTGVEFTVSLGNEYLA----------------KMR--DPDCAKAWIKSNVQAYL-PATKITCITVGNEVLTFN 123 (410)
Q Consensus 63 ~vL~A~~~tgi~V~lGv~n~~l~----------------~~a--~~~~A~~wv~~~V~~~~-p~~~I~~I~VGNEvl~~~ 123 (410)
..|+++++.|++.+++.-|..-- .+. ..++-...+.+-++.|- -.-.|+.|.-=||.-..+
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 48899999999999988765311 121 11222233333333220 135788999999998663
Q ss_pred C------CC-chhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecc
Q 015263 124 D------TS-LSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLG 160 (410)
Q Consensus 124 ~------~s-~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~ 160 (410)
. +. ..++....|+.++.+|+++||...|-+.-+..+.
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~Ea~~~~ 231 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACEAGDWE 231 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEEESSGG
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecchhhHH
Confidence 1 11 2577889999999999999997544443333333
No 33
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=53.84 E-value=71 Score=34.74 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=49.5
Q ss_pred CCCCccEEEeeeccCCCCCCCC-------CCCCHHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEEEeecC-CCCCCCC
Q 015263 253 GYKKLLLHISETGWPSKGDEDE-------AGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNE-NLKPGPT 324 (410)
Q Consensus 253 g~~~~~VvVsETGWPS~G~~~~-------~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE-~wK~g~~ 324 (410)
.|.|.+|.|+|-|-+...+... ...=.+..+.|++.+.+.+.. .|. ....+|+.++-|- .|..|
T Consensus 404 ~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv-----nv~GYf~WSLmDnfEw~~G-- 475 (524)
T KOG0626|consen 404 KYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV-----NVKGYFVWSLLDNFEWLDG-- 475 (524)
T ss_pred hcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC-----ceeeEEEeEcccchhhhcC--
Confidence 4789999999999988754321 112345566777777776652 231 1235888898873 45554
Q ss_pred CCCceeeecCC
Q 015263 325 SERNYGLFKPD 335 (410)
Q Consensus 325 ~E~~wGLf~~d 335 (410)
..-.||||+.|
T Consensus 476 y~~RFGlyyVD 486 (524)
T KOG0626|consen 476 YKVRFGLYYVD 486 (524)
T ss_pred cccccccEEEe
Confidence 56889999953
No 34
>PLN02998 beta-glucosidase
Probab=52.16 E-value=25 Score=37.84 Aligned_cols=73 Identities=19% Similarity=0.263 Sum_probs=44.7
Q ss_pred CCCccEEEeeeccCCCCCCCCCC---CCHHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEEEeecC-CCCCCCCCCCce
Q 015263 254 YKKLLLHISETGWPSKGDEDEAG---ATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNE-NLKPGPTSERNY 329 (410)
Q Consensus 254 ~~~~~VvVsETGWPS~G~~~~~~---As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE-~wK~g~~~E~~w 329 (410)
|++.||+|||-|+....+ +.. -=++--+.+++.+.+.+. .|-+. .-+|.-++.|- .|.. +-++.|
T Consensus 390 Y~~ppI~ITENG~~~~~~--g~v~D~~Ri~Yl~~hl~~~~kAi~--dGv~V-----~GY~~WSl~DnfEW~~--Gy~~Rf 458 (497)
T PLN02998 390 YGNPPVYILENGQMTPHS--SSLVDTTRVKYLSSYIKAVLHSLR--KGSDV-----KGYFQWSLMDVFELFG--GYERSF 458 (497)
T ss_pred cCCCCEEEeCCCCccCCC--CcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhc--cccCcc
Confidence 445589999999987531 111 112334555555555553 45333 35777777772 3444 378999
Q ss_pred eeecCCCC
Q 015263 330 GLFKPDGS 337 (410)
Q Consensus 330 GLf~~dg~ 337 (410)
||++.|.+
T Consensus 459 GLv~VD~~ 466 (497)
T PLN02998 459 GLLYVDFK 466 (497)
T ss_pred ceEEECCC
Confidence 99998765
No 35
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=50.42 E-value=51 Score=32.79 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=42.5
Q ss_pred HHHHHh--cCCeEEEEecccc----cccc-CCHHHHHHHHHHHhhhhCCCCcEEEEEecccccccCCCCchhhHHHHHHH
Q 015263 65 LKAFAN--TGVEFTVSLGNEY----LAKM-RDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMES 137 (410)
Q Consensus 65 L~A~~~--tgi~V~lGv~n~~----l~~~-a~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~ 137 (410)
+.++++ .++||++.|.... ...+ +++...... .++|..++......+|-+==|........ ...++..|++
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~f-i~~i~~~~~~~~~DGidiDwE~~~~~~~d-~~~~~~ll~~ 134 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKF-IDSIVSFLKKYGFDGIDIDWEYPGARGDD-RENYTALLKE 134 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHH-HHHHHHHHHHcCCCeEEECCcCCCCCccH-HHHHHHHHHH
Confidence 455554 4899999886522 2223 244332333 33343333333466666643433221011 4578889999
Q ss_pred HHHHHHhC
Q 015263 138 VHTALVNL 145 (410)
Q Consensus 138 vr~aL~~~ 145 (410)
+|++|.+.
T Consensus 135 lr~~l~~~ 142 (334)
T smart00636 135 LREALDKE 142 (334)
T ss_pred HHHHHHHh
Confidence 99999864
No 36
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=50.09 E-value=2.9e+02 Score=28.05 Aligned_cols=129 Identities=13% Similarity=0.138 Sum_probs=78.4
Q ss_pred cCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCC-------CcccCCCchhhhhH
Q 015263 165 SYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQ-------GIVDPASNLHYDNM 237 (410)
Q Consensus 165 s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~-------~v~d~~~~~~y~nl 237 (410)
.+|...+.+.++..+.++.++|.+.+.|+.+.+.+.-- +.......+..- ...|+. ......|...-..+
T Consensus 63 ~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~--G~~~~~~~~~~~-~~~ps~~~~~~~~~~~~~mt~~eI~~i 139 (343)
T cd04734 63 PAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHL--GRRGDGDGSWLP-PLAPSAVPEPRHRAVPKAMEEEDIEEI 139 (343)
T ss_pred CCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCC--CcCcCcccCCCc-ccCCCCCCCCCCCCCCCcCCHHHHHHH
Confidence 35556677777777899999999999999999887531 111100000000 000000 00011222223456
Q ss_pred HHHHHHHHHHHHHHcCCCCccEEEeeecc-------CCC-CCCCCCCCCHHHHHHHHHHHHHHHHccCC
Q 015263 238 LFAQIDAVYAALASLGYKKLLLHISETGW-------PSK-GDEDEAGATPENAKKYNGNLIKLISSKKG 298 (410)
Q Consensus 238 ~daqvDav~~Al~~~g~~~~~VvVsETGW-------PS~-G~~~~~~As~~Na~~y~~~li~~~~~~~G 298 (410)
.+..++|..-|. ++|+..++|+..- |+ |.. -..++-+.+++|-.+|...+++.+++..|
T Consensus 140 i~~f~~AA~ra~-~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg 206 (343)
T cd04734 140 IAAFADAARRCQ-AGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG 206 (343)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC
Confidence 666677776664 4799999999865 54 422 22233567899999999999999987666
No 37
>PLN02814 beta-glucosidase
Probab=50.03 E-value=55 Score=35.39 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCCCEEEe-------cc-----CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015263 40 PENVIPLVKSIGATRVKL-------YD-----AD-------PKVLKAFANTGVEFTVSLGNEYLA 85 (410)
Q Consensus 40 ~~~v~~llks~~i~~VRl-------Y~-----~d-------~~vL~A~~~tgi~V~lGv~n~~l~ 85 (410)
.+|+++|||++|++.-|+ += .+ .+++.++.+.||+-+|.+.--+++
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP 143 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLP 143 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCC
Confidence 578999999999877764 31 13 368999999999999999755544
No 38
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=49.22 E-value=1.4e+02 Score=29.70 Aligned_cols=126 Identities=15% Similarity=0.145 Sum_probs=60.7
Q ss_pred hHHHHHHHh--cCCeEE--E--Eecccc-ccccC-CHHHHHHHHHHHhhhhCCCCcEEEEEecc-ccccc-CCCCchhhH
Q 015263 62 PKVLKAFAN--TGVEFT--V--SLGNEY-LAKMR-DPDCAKAWIKSNVQAYLPATKITCITVGN-EVLTF-NDTSLSGCL 131 (410)
Q Consensus 62 ~~vL~A~~~--tgi~V~--l--Gv~n~~-l~~~a-~~~~A~~wv~~~V~~~~p~~~I~~I~VGN-Evl~~-~~~s~~~~L 131 (410)
...+.++++ .++||+ + |=|... ...+. ++...+.+++ ++..++....+.+|-+=- |.... +.......+
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~-s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~ 132 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIK-LLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKEL 132 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHH-HHHHHHHHcCCCcEEEechhhhcccCCHHHHHHH
Confidence 334455554 479998 4 334332 23332 5443333433 444433333455554421 11111 101114568
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcccc-ccchhhhhhhhhhhhhcCCceeeecCCCc
Q 015263 132 LPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFR-KDLVDCITPILDFHVKTASPFLINAYPYF 203 (410)
Q Consensus 132 l~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~-~dl~~~l~~~ldfL~~t~sp~~vNiyPyf 203 (410)
+..|+++|.+|.+.|+. +.++.+-... ..+....+. -|+ +.|.+.+|| +.|-.|=|.
T Consensus 133 ~~~l~el~~~l~~~~~~--l~~~v~~~~~-----~~~~~~~~~~~d~-~~l~~~vD~-------v~lMtYD~~ 190 (318)
T cd02876 133 IQLVIHLGETLHSANLK--LILVIPPPRE-----KGNQNGLFTRKDF-EKLAPHVDG-------FSLMTYDYS 190 (318)
T ss_pred HHHHHHHHHHHhhcCCE--EEEEEcCccc-----cccccccccccCH-HHHHhhccE-------EEEEeeccC
Confidence 89999999999887752 4444331110 000001121 122 568889999 666666543
No 39
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=48.87 E-value=3.8e+02 Score=29.03 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCcccCC
Q 015263 128 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKG 207 (410)
Q Consensus 128 ~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~ 207 (410)
.++.+.+++.+|+++ ..+.++|..-. .|| | |-.+.+..-++|+.+.+- -.+++|+|--...
T Consensus 346 ~e~~~~~v~~lr~~~------p~i~i~tdiIv-----GfP---g----ET~edf~~Tl~~v~~l~~-d~~~~f~ysprpG 406 (509)
T PRK14327 346 RESYLELVRKIKEAI------PNVALTTDIIV-----GFP---N----ETDEQFEETLSLYREVGF-DHAYTFIYSPREG 406 (509)
T ss_pred HHHHHHHHHHHHHhC------CCcEEeeeEEE-----eCC---C----CCHHHHHHHHHHHHHcCC-CeEEEeeeeCCCC
Confidence 567777888887753 23566654322 355 1 222345566777766543 2467776654443
No 40
>PLN02849 beta-glucosidase
Probab=48.86 E-value=33 Score=37.04 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=44.7
Q ss_pred CCCccEEEeeeccCCCCCCCCCC---CCHHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEEEeecC-CCCCCCCCCCce
Q 015263 254 YKKLLLHISETGWPSKGDEDEAG---ATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNE-NLKPGPTSERNY 329 (410)
Q Consensus 254 ~~~~~VvVsETGWPS~G~~~~~~---As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE-~wK~g~~~E~~w 329 (410)
|++.||+|||-|++......+.. -=++--+.+++.+.+.+. .|-+- .-+|.-++.|- .|.. +-++.|
T Consensus 383 Y~~pPi~ITENG~~~~d~~~~~v~D~~Ri~Yl~~hL~~l~~Ai~--dGv~V-----~GY~~WSl~DnfEW~~--Gy~~Rf 453 (503)
T PLN02849 383 YGNPPVYILENGTPMKQDLQLQQKDTPRIEYLHAYIGAVLKAVR--NGSDT-----RGYFVWSFMDLYELLK--GYEFSF 453 (503)
T ss_pred cCCCCEEEeCCCCCccCCCCCcccCHHHHHHHHHHHHHHHHHHH--cCCCE-----EEEeeccchhhhchhc--cccCcc
Confidence 54558999999998654311111 112233455555555553 45332 35777777773 3433 478999
Q ss_pred eeecCCCC
Q 015263 330 GLFKPDGS 337 (410)
Q Consensus 330 GLf~~dg~ 337 (410)
||++.|..
T Consensus 454 GLi~VD~~ 461 (503)
T PLN02849 454 GLYSVNFS 461 (503)
T ss_pred ceEEECCC
Confidence 99998765
No 41
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=47.74 E-value=77 Score=30.38 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=26.8
Q ss_pred HcCCCCccEEEeeeccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHc
Q 015263 251 SLGYKKLLLHISETGWPSKGDEDE---AGATPENAKKYNGNLIKLISS 295 (410)
Q Consensus 251 ~~g~~~~~VvVsETGWPS~G~~~~---~~As~~Na~~y~~~li~~~~~ 295 (410)
.++++..+|+. .|||.|...+ ...+...++..+..++..+.+
T Consensus 44 ~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 44 DLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 35677755555 6999998643 234555556666777777654
No 42
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.69 E-value=3.2e+02 Score=28.64 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCccc
Q 015263 128 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAY 205 (410)
Q Consensus 128 ~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~ 205 (410)
.+....+++.+|+++ ..+.++|..-. .+| | |-.+.+...++|+.+.+ +-.+++++|--.
T Consensus 281 ~~~~~~~i~~lr~~~------~~i~i~~d~Iv-----G~P---g----ET~ed~~~tl~~i~~l~-~~~~~~~~~sp~ 339 (439)
T PRK14328 281 REYYLELVEKIKSNI------PDVAITTDIIV-----GFP---G----ETEEDFEETLDLVKEVR-YDSAFTFIYSKR 339 (439)
T ss_pred HHHHHHHHHHHHHhC------CCCEEEEEEEE-----ECC---C----CCHHHHHHHHHHHHhcC-CCcccceEecCC
Confidence 567777777777652 13555553322 245 1 22245566778877654 335677766544
No 43
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=47.27 E-value=49 Score=33.48 Aligned_cols=113 Identities=18% Similarity=0.286 Sum_probs=56.8
Q ss_pred cCCeEEEEecc--cc---cccc-CCHHHHHHHHHHHhhhhCCCCcEEEEEeccccccc--CCCCchhhHHHHHHHHHHHH
Q 015263 71 TGVEFTVSLGN--EY---LAKM-RDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTF--NDTSLSGCLLPAMESVHTAL 142 (410)
Q Consensus 71 tgi~V~lGv~n--~~---l~~~-a~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~--~~~s~~~~Ll~am~~vr~aL 142 (410)
.++||++.|.. .. ...+ +++......++ ++..++....+.+|-+==|.... ....-...++..|+.+|++|
T Consensus 69 p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~-~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l 147 (362)
T cd02872 69 PNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIK-SAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAF 147 (362)
T ss_pred CCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHH-HHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 58999988743 21 2223 24433333333 33333322244555543333221 11111457899999999999
Q ss_pred HhCCCCCCeEEeeeeecc--cccccCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCc
Q 015263 143 VNLGLDKQVSVTTAHSLG--VLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYF 203 (410)
Q Consensus 143 ~~~Gl~~~I~VsTa~~~~--vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf 203 (410)
++.+- +..++.+.... .+... | |+ +.|.+.+|| +.+-.|-|.
T Consensus 148 ~~~~~--~~~ls~av~~~~~~~~~~-------~--d~-~~l~~~vD~-------v~vmtYD~~ 191 (362)
T cd02872 148 EPEAP--RLLLTAAVSAGKETIDAA-------Y--DI-PEISKYLDF-------INVMTYDFH 191 (362)
T ss_pred HhhCc--CeEEEEEecCChHHHhhc-------C--CH-HHHhhhcce-------EEEecccCC
Confidence 98731 12344332211 11111 1 22 467888999 667777654
No 44
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=46.03 E-value=33 Score=32.12 Aligned_cols=33 Identities=21% Similarity=0.539 Sum_probs=30.3
Q ss_pred HHHHhhcCCCEEEeccCChHHHHHHHhcCCeEE
Q 015263 44 IPLVKSIGATRVKLYDADPKVLKAFANTGVEFT 76 (410)
Q Consensus 44 ~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~ 76 (410)
.++|+.+|++++|+.+..+.-..++.+.|++|.
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv 165 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVV 165 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998877889999999997
No 45
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=45.56 E-value=3.9e+02 Score=28.11 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCcc
Q 015263 128 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFA 204 (410)
Q Consensus 128 ~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~ 204 (410)
.++.+.+++.+|++ |. .+.++|..-. .+| | |-.+.+...++|+.+.+ +-.+++|+|--
T Consensus 271 ~~~~~~~v~~lr~~----~~--~i~i~~d~Iv-----G~P---g----Et~ed~~~tl~~i~~l~-~~~i~~f~ysp 328 (440)
T PRK14334 271 REKYLERIAEIREA----LP--DVVLSTDIIV-----GFP---G----ETEEDFQETLSLYDEVG-YDSAYMFIYSP 328 (440)
T ss_pred HHHHHHHHHHHHHh----CC--CcEEEEeEEE-----ECC---C----CCHHHHHHHHHHHHhcC-CCEeeeeEeeC
Confidence 56677777777765 32 3455554322 244 1 12234556778877665 33567776543
No 46
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=45.18 E-value=2e+02 Score=28.09 Aligned_cols=107 Identities=17% Similarity=0.228 Sum_probs=59.5
Q ss_pred CCCHHHHHHHHhhcCCCEEEecc----------CChHHHHH-HHhcCCeEEEEeccccccccC--CHH-HHHHHHHHHhh
Q 015263 37 LPTPENVIPLVKSIGATRVKLYD----------ADPKVLKA-FANTGVEFTVSLGNEYLAKMR--DPD-CAKAWIKSNVQ 102 (410)
Q Consensus 37 lps~~~v~~llks~~i~~VRlY~----------~d~~vL~A-~~~tgi~V~lGv~n~~l~~~a--~~~-~A~~wv~~~V~ 102 (410)
..+.++.+.+.|.+|++.|.|-. +++.-+++ +.++|+.++ .+..+..+. +++ .++ ...+.
T Consensus 16 ~l~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~Iv---SINAlypFn~wt~~~~a~---a~~la 89 (272)
T COG4130 16 GLSVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTIV---SINALYPFNEWTEERVAE---ARGLA 89 (272)
T ss_pred CCCHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEEE---EeeccccccccChHHHHH---HHHHH
Confidence 34678889999999999998873 22444444 557898763 222232221 121 111 12233
Q ss_pred hhCCCCcEEEEEeccccccc----CCCCchhhHHHHHHHHHHHHHhCCCCCCe
Q 015263 103 AYLPATKITCITVGNEVLTF----NDTSLSGCLLPAMESVHTALVNLGLDKQV 151 (410)
Q Consensus 103 ~~~p~~~I~~I~VGNEvl~~----~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I 151 (410)
.|..+..-++++. =.+++ ++..-...|+.+++.+|-.|.+.|+.+-|
T Consensus 90 ~yA~acGA~aLvl--cPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~GLV 140 (272)
T COG4130 90 DYAAACGAKALVL--CPLNDGSWPGTAVRREDLVEALKALKPILDEYGITGLV 140 (272)
T ss_pred HHHHhcCCceEEE--EeccCCCCCCcccchHHHHHHHHHhhHHHHHhCccccc
Confidence 3322211111111 01222 22222578999999999999999998654
No 47
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=44.97 E-value=52 Score=35.21 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCCEEEe-------cc------CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015263 40 PENVIPLVKSIGATRVKL-------YD------AD-------PKVLKAFANTGVEFTVSLGNEYLA 85 (410)
Q Consensus 40 ~~~v~~llks~~i~~VRl-------Y~------~d-------~~vL~A~~~tgi~V~lGv~n~~l~ 85 (410)
.+++++|||++|++..|+ += .+ .+++..+.+.||+-+|.++--+++
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 689999999999877764 31 23 368899999999999999855544
No 48
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=44.69 E-value=34 Score=34.89 Aligned_cols=77 Identities=22% Similarity=0.181 Sum_probs=51.9
Q ss_pred hHHHHHHHhcCCeEEEEeccccccccCCHHHHHHHHHHHhhhhCCCCcEEEEEecccccccCCCCchhhHHHHHHHHHHH
Q 015263 62 PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTA 141 (410)
Q Consensus 62 ~~vL~A~~~tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~vr~a 141 (410)
..||+++..+|-.+.+|=.- .+.. +++.|..|+...+..++ +.|.+|+--|.-... -+-++
T Consensus 175 m~VLkp~idsGkik~~Ge~~--~d~W-~ps~Aq~~men~lta~~--~~vdaVvA~nDgtag--------------GaI~a 235 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQW--TDGW-LPSNAQQIMENLLTANY--NDIDAVVAPNDGTAG--------------GAIAA 235 (341)
T ss_pred HHHHHHHhhCCceEEeeecc--cccc-CHHHHHHHHHHHHhccc--CceeEEEcCCCchhH--------------HHHHH
Confidence 46999888887444466332 2233 68889999998888775 358888877652221 12256
Q ss_pred HHhCCCCCCeEEeeee
Q 015263 142 LVNLGLDKQVSVTTAH 157 (410)
Q Consensus 142 L~~~Gl~~~I~VsTa~ 157 (410)
|++.||++.+|||=-|
T Consensus 236 L~a~Gl~g~vpVsGQD 251 (341)
T COG4213 236 LKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHhcccCCCCcccCcc
Confidence 8889999889987543
No 49
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=44.27 E-value=28 Score=35.10 Aligned_cols=220 Identities=16% Similarity=0.197 Sum_probs=107.9
Q ss_pred HHHHHHHhcCCeEE--EEeccccccc----c-C-CH-------HHHHHHHHHHhhhhCCC-CcEEEEEecccccccCC--
Q 015263 63 KVLKAFANTGVEFT--VSLGNEYLAK----M-R-DP-------DCAKAWIKSNVQAYLPA-TKITCITVGNEVLTFND-- 124 (410)
Q Consensus 63 ~vL~A~~~tgi~V~--lGv~n~~l~~----~-a-~~-------~~A~~wv~~~V~~~~p~-~~I~~I~VGNEvl~~~~-- 124 (410)
.++.-++..||+|- .=||....+. . . ++ +....+|++-+..| .+ .+|...=|=||++....
T Consensus 63 ~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~~~~~~~~~~~~~~~l~~~I~~v~~~y-~~~g~i~~WDVvNE~i~~~~~~ 141 (320)
T PF00331_consen 63 AILDWARENGIKVRGHTLVWHSQTPDWVFNLANGSPDEKEELRARLENHIKTVVTRY-KDKGRIYAWDVVNEAIDDDGNP 141 (320)
T ss_dssp HHHHHHHHTT-EEEEEEEEESSSS-HHHHTSTTSSBHHHHHHHHHHHHHHHHHHHHT-TTTTTESEEEEEES-B-TTSSS
T ss_pred HHHHHHHhcCcceeeeeEEEcccccceeeeccCCCcccHHHHHHHHHHHHHHHHhHh-ccccceEEEEEeeecccCCCcc
Confidence 56777778888774 3345433222 1 1 21 12234555544444 44 37999888899997643
Q ss_pred ----CCc------hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhhhhcCCc
Q 015263 125 ----TSL------SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASP 194 (410)
Q Consensus 125 ----~s~------~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp 194 (410)
.+. .+.+..+.+-.|++.. +++.---+ .+++. +.-...+..+++.|.+.|.|
T Consensus 142 ~~~r~~~~~~~lG~~yi~~aF~~A~~~~P------~a~L~~ND-y~~~~-----------~~k~~~~~~lv~~l~~~gvp 203 (320)
T PF00331_consen 142 GGLRDSPWYDALGPDYIADAFRAAREADP------NAKLFYND-YNIES-----------PAKRDAYLNLVKDLKARGVP 203 (320)
T ss_dssp SSBCTSHHHHHHTTCHHHHHHHHHHHHHT------TSEEEEEE-SSTTS-----------THHHHHHHHHHHHHHHTTHC
T ss_pred ccccCChhhhcccHhHHHHHHHHHHHhCC------CcEEEecc-ccccc-----------hHHHHHHHHHHHHHHhCCCc
Confidence 011 2345556666666654 23322211 12211 11123456777777777777
Q ss_pred e-eeecCCCcccCCCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCCCCccEEEeeeccCCCCCCC
Q 015263 195 F-LINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETGWPSKGDED 273 (410)
Q Consensus 195 ~-~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~~~~~VvVsETGWPS~G~~~ 273 (410)
| +|-+--.| .... . .+.+..+|+++.--+++|+|||--=.......
T Consensus 204 IdgIG~Q~H~-----------------------~~~~----~------~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~ 250 (320)
T PF00331_consen 204 IDGIGLQSHF-----------------------DAGY----P------PEQIWNALDRFASLGLPIHITELDVRDDDNPP 250 (320)
T ss_dssp S-EEEEEEEE-----------------------ETTS----S------HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTS
T ss_pred cceechhhcc-----------------------CCCC----C------HHHHHHHHHHHHHcCCceEEEeeeecCCCCCc
Confidence 4 11111001 1000 0 22233344444334699999997433332211
Q ss_pred CCCCCHHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEEEeecCC-CCCCCCCCCceeeecCCCCeeee
Q 015263 274 EAGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFALFNEN-LKPGPTSERNYGLFKPDGSPAYS 341 (410)
Q Consensus 274 ~~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~~FDE~-wK~g~~~E~~wGLf~~dg~~ky~ 341 (410)
. ....+.|+.+++.+++.+.+. | |..-..+.+--+.|.. |.+... -.+=+||+.|.+||-.
T Consensus 251 ~-~~~~~~qA~~~~~~~~~~~~~---~--~~~v~git~Wg~~D~~sW~~~~~-~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 251 D-AEEEEAQAEYYRDFLTACFSH---P--PAAVEGITWWGFTDGYSWRPDTP-PDRPLLFDEDYQPKPA 312 (320)
T ss_dssp C-HHHHHHHHHHHHHHHHHHHHT---T--HCTEEEEEESSSBTTGSTTGGHS-EG--SSB-TTSBB-HH
T ss_pred c-hHHHHHHHHHHHHHHHHHHhC---C--ccCCCEEEEECCCCCCcccCCCC-CCCCeeECCCcCCCHH
Confidence 0 234667889999999988752 1 0111234444555533 654311 2234799999999853
No 50
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.51 E-value=4e+02 Score=27.84 Aligned_cols=110 Identities=12% Similarity=0.025 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCcccCC
Q 015263 128 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKG 207 (410)
Q Consensus 128 ~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~ 207 (410)
.++...+++.+|+++ ..+.++|..-. .|| | |-.+.+...++|+.+.+- -.+|+++|--...
T Consensus 258 ~~~~~~~i~~lr~~~------pgi~i~~d~Iv-----GfP---G----ET~edf~~tl~fi~~~~~-~~~~v~~ysp~pG 318 (418)
T PRK14336 258 NQQYRELVERLKTAM------PDISLQTDLIV-----GFP---S----ETEEQFNQSYKLMADIGY-DAIHVAAYSPRPQ 318 (418)
T ss_pred HHHHHHHHHHHHhhC------CCCEEEEEEEE-----ECC---C----CCHHHHHHHHHHHHhcCC-CEEEeeecCCCCC
Confidence 567778888887763 23556654322 355 1 222455667788776552 3467776654333
Q ss_pred CCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCCCCccEEEee
Q 015263 208 SPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISE 263 (410)
Q Consensus 208 ~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~~~~~VvVsE 263 (410)
.| -|..+. ..+.......+++.+.+.+-.......++.-....+|+|-+
T Consensus 319 T~-----a~~~~~--~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~~G~~~~vlve~ 367 (418)
T PRK14336 319 TV-----AARDMA--DDVPVIEKKRRLKLIEDLQKETVGKANAALMDTFAEVLVEG 367 (418)
T ss_pred Ch-----hHhhCc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE
Confidence 22 111111 11211112345555555554444433443322457788854
No 51
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=42.47 E-value=30 Score=35.94 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEE
Q 015263 43 VIPLVKSIGATRVKLYDADPKVLKAFANTGVEFT 76 (410)
Q Consensus 43 v~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~ 76 (410)
-.++||.+|+++||+. .+|.=..++.+.||+|.
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~ 362 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVV 362 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEE
Confidence 4789999999999999 67888888999999986
No 52
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=41.91 E-value=1.5e+02 Score=29.21 Aligned_cols=138 Identities=14% Similarity=0.203 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHhhcCCCEEEeccCC-------hHHHHHHHh---cCCeEEEEecccccccc-CCHHHHHHHHHHHhhhh
Q 015263 36 NLPTPENVIPLVKSIGATRVKLYDAD-------PKVLKAFAN---TGVEFTVSLGNEYLAKM-RDPDCAKAWIKSNVQAY 104 (410)
Q Consensus 36 nlps~~~v~~llks~~i~~VRlY~~d-------~~vL~A~~~---tgi~V~lGv~n~~l~~~-a~~~~A~~wv~~~V~~~ 104 (410)
+.++|.+.++-|+..|+++|-+-.+. ..+++.+.+ .--++.+|-|.=..... ++++. ..-+.+.+...
T Consensus 56 ~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D-~~~va~aL~~~ 134 (262)
T PF06180_consen 56 KIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPED-YEAVAEALAEE 134 (262)
T ss_dssp ----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHH-HHHHHHHHHCC
T ss_pred CcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHH-HHHHHHHHHHh
Confidence 46899999999999999999999876 345544443 33589999885221001 11221 12244455554
Q ss_pred CC----CCcEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhh
Q 015263 105 LP----ATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDC 180 (410)
Q Consensus 105 ~p----~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~ 180 (410)
+| +..+..+-=||+ .... .+-..++..|++.++. ++-|+|.+. +| .
T Consensus 135 ~~~~~~~~a~vlmGHGt~-------h~an---~~Y~~l~~~l~~~~~~-~v~vgtvEG-------~P------------~ 184 (262)
T PF06180_consen 135 FPKKRKDEAVVLMGHGTP-------HPAN---AAYSALQAMLKKHGYP-NVFVGTVEG-------YP------------S 184 (262)
T ss_dssp S-TT-TTEEEEEEE---S-------CHHH---HHHHHHHHHHHCCT-T-TEEEEETTS-------SS------------B
T ss_pred ccccCCCCEEEEEeCCCC-------CCcc---HHHHHHHHHHHhCCCC-eEEEEEeCC-------CC------------C
Confidence 44 233333333332 2122 2344556778888775 688999753 55 2
Q ss_pred hhhhhhhhhhcCCceeeecCCCccc
Q 015263 181 ITPILDFHVKTASPFLINAYPYFAY 205 (410)
Q Consensus 181 l~~~ldfL~~t~sp~~vNiyPyf~~ 205 (410)
+..+++.|.+.|-- -|.+.||.-=
T Consensus 185 ~~~vi~~L~~~g~k-~V~L~PlMlV 208 (262)
T PF06180_consen 185 LEDVIARLKKKGIK-KVHLIPLMLV 208 (262)
T ss_dssp HHHHHHHHHHHT-S-EEEEEEESSS
T ss_pred HHHHHHHHHhcCCC-eEEEEecccc
Confidence 23344455554422 4788898753
No 53
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=41.31 E-value=4.2e+02 Score=27.74 Aligned_cols=109 Identities=11% Similarity=0.095 Sum_probs=54.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCcccCC
Q 015263 128 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKG 207 (410)
Q Consensus 128 ~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~ 207 (410)
.++.+.+++.+|++.. .+.++|.. +. .|| .|-.+.+...++|+.+.+- -.+++|+|-.+-.
T Consensus 264 ~~~~~~~v~~lr~~~p------~i~i~~d~----Iv-GfP-------gETeedf~~Tl~fl~~l~~-~~~~~f~~sp~pG 324 (420)
T PRK14339 264 KEWFLNRAEKLRALVP------EVSISTDI----IV-GFP-------GESDKDFEDTMDVLEKVRF-EQIFSFKYSPRPL 324 (420)
T ss_pred HHHHHHHHHHHHHHCC------CCEEEEEE----EE-ECC-------CCCHHHHHHHHHHHHhcCC-CEEeeEecCCCCC
Confidence 5677778888877531 35666642 22 355 1222455667788776552 2367776544433
Q ss_pred CCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCCCCccEEEee
Q 015263 208 SPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISE 263 (410)
Q Consensus 208 ~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~~~~~VvVsE 263 (410)
.|- +. +. ..+.+.....+...+.+.+-+..+...++.=....+|+|-+
T Consensus 325 T~a-----~~-~~--~~v~~~~k~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~ 372 (420)
T PRK14339 325 TEA-----AA-WK--NQVDEEVASERLERLQNRHKEILDEIAKKEVGKTHVVLFEE 372 (420)
T ss_pred Cch-----hh-CC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE
Confidence 321 11 11 11211122345566665555544444444322457777743
No 54
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=41.14 E-value=1.6e+02 Score=29.99 Aligned_cols=78 Identities=18% Similarity=0.288 Sum_probs=50.9
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEeccccccccCCHHHHHHHHHHHhhhh
Q 015263 25 SIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAY 104 (410)
Q Consensus 25 ~~GInYg~~~~nlps~~~v~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~ 104 (410)
.+|||.-...++ |..++.++.+...+.+.|=+..-+|...+.+++.|++|+.-|+ +...|..+++.-
T Consensus 57 PfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~--------s~~~A~~a~~~G---- 123 (320)
T cd04743 57 PWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVP--------SPGLLKQFLENG---- 123 (320)
T ss_pred CeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeC--------CHHHHHHHHHcC----
Confidence 578887544332 3345667777777777776665556657889999999998776 355555554432
Q ss_pred CCCCcEEEEEecccc
Q 015263 105 LPATKITCITVGNEV 119 (410)
Q Consensus 105 ~p~~~I~~I~VGNEv 119 (410)
.+. .|+-|.|.
T Consensus 124 --aD~--vVaqG~EA 134 (320)
T cd04743 124 --ARK--FIFEGREC 134 (320)
T ss_pred --CCE--EEEecCcC
Confidence 222 47789997
No 55
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=40.58 E-value=1.9e+02 Score=30.76 Aligned_cols=182 Identities=15% Similarity=0.191 Sum_probs=77.6
Q ss_pred EEEeccccccc---CCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhh
Q 015263 112 CITVGNEVLTF---NDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFH 188 (410)
Q Consensus 112 ~I~VGNEvl~~---~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL 188 (410)
..=|=||.=.. +..+ ..+-....+.+..+|++.. ..++|+-+-.. + +. . ..+...++|.
T Consensus 158 ~fEiWNEPd~~~f~~~~~-~~ey~~ly~~~~~~iK~~~--p~~~vGGp~~~--~--~~----~-------~~~~~~l~~~ 219 (486)
T PF01229_consen 158 YFEIWNEPDLKDFWWDGT-PEEYFELYDATARAIKAVD--PELKVGGPAFA--W--AY----D-------EWCEDFLEFC 219 (486)
T ss_dssp EEEESS-TTSTTTSGGG--HHHHHHHHHHHHHHHHHH---TTSEEEEEEEE--T--T-----T-------HHHHHHHHHH
T ss_pred eEEeCcCCCcccccCCCC-HHHHHHHHHHHHHHHHHhC--CCCcccCcccc--c--cH----H-------HHHHHHHHHH
Confidence 34568885332 1122 4456677777778888765 35788876110 0 00 0 1222333333
Q ss_pred hhcCCc---eeeecCCCcccCCCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCCCCccEEEeeec
Q 015263 189 VKTASP---FLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETG 265 (410)
Q Consensus 189 ~~t~sp---~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~~~~~VvVsETG 265 (410)
.+.+.| +..|.||+=......+.. + .... ....+++ ++.-++..+...+.+++++.++|
T Consensus 220 ~~~~~~~DfiS~H~y~~~~~~~~~~~~---~-------~~~~-----~~~~~~~-~~~~~~~~~~~e~~p~~~~~~tE-- 281 (486)
T PF01229_consen 220 KGNNCPLDFISFHSYGTDSAEDINENM---Y-------ERIE-----DSRRLFP-ELKETRPIINDEADPNLPLYITE-- 281 (486)
T ss_dssp HHCT---SEEEEEEE-BESESE-SS-E---E-------EEB-------HHHHHH-HHHHHHHHHHTSSSTT--EEEEE--
T ss_pred hcCCCCCCEEEEEecccccccccchhH---H-------hhhh-----hHHHHHH-HHHHHHHHHhhccCCCCceeecc--
Confidence 333332 577888753221111000 0 0000 0111222 22233334455678899999999
Q ss_pred cCCCCCCCC-CCCCHHHHHHHHHHHHHHHHccCCCCCCCCCCccEEEEE----eecCCCCCCCCCCCceeeecCCCCee
Q 015263 266 WPSKGDEDE-AGATPENAKKYNGNLIKLISSKKGTPMRPNCDLNIYVFA----LFNENLKPGPTSERNYGLFKPDGSPA 339 (410)
Q Consensus 266 WPS~G~~~~-~~As~~Na~~y~~~li~~~~~~~GTP~rp~~~~~~y~F~----~FDE~wK~g~~~E~~wGLf~~dg~~k 339 (410)
|.+.-.... -.-|.-+|+-..++++..... .++.|-+= .|.|+--+...+-.-|||++.+|-+|
T Consensus 282 ~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sywt~sD~Fee~~~~~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 282 WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSYWTFSDRFEENGTPRKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEES-SBS---TTSS-SSSSSS-S-SEECCCEE-
T ss_pred cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhccchhhhhhccCCCCCceecchhhhhccCCCc
Confidence 877654322 234556666555555555421 13332221 23332222223556699999998665
No 56
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.20 E-value=4.6e+02 Score=27.44 Aligned_cols=128 Identities=10% Similarity=0.078 Sum_probs=62.9
Q ss_pred EEEEEeccccccc-------CCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhh
Q 015263 110 ITCITVGNEVLTF-------NDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCIT 182 (410)
Q Consensus 110 I~~I~VGNEvl~~-------~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~ 182 (410)
...+.+|=|-... ...+ .++...+++.+|+.+ ..+.|+|..-. .|| .|-.+.+.
T Consensus 250 ~~~l~iglQSgsd~vLk~M~R~~~-~~~~~~~i~~lr~~~------~~i~i~~d~Iv-----GfP-------gET~edf~ 310 (434)
T PRK14330 250 AKSIHLPVQSGSNRILKLMNRRYT-REEYLELIEKIRSKV------PDASISSDIIV-----GFP-------TETEEDFM 310 (434)
T ss_pred cCceecCcCCCCHHHHHhcCCCCC-HHHHHHHHHHHHHhC------CCCEEEEEEEE-----ECC-------CCCHHHHH
Confidence 3456666554322 1123 566777777777652 13666665322 355 12234566
Q ss_pred hhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCCCCccEEEe
Q 015263 183 PILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHIS 262 (410)
Q Consensus 183 ~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~~~~~VvVs 262 (410)
..++|+.+.+- =.+|+++|-.+-..| -|..+. ..+.+.....++..|.+-+-.-.....++.-....+|+|.
T Consensus 311 ~tl~fi~~~~~-~~~~~~~~sp~pGT~-----~~~~~~--~~v~~~~~~~r~~~l~~~~~~~~~~~~~~~~G~~~~vlve 382 (434)
T PRK14330 311 ETVDLVEKAQF-ERLNLAIYSPREGTV-----AWKYYK--DDVPYEEKVRRMQYLLNLQKRINRKLNERYLGKTVEIIVE 382 (434)
T ss_pred HHHHHHHhcCC-CEEeeeeccCCCCCh-----hhhhCc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 77888877663 356777665544333 111111 1122222234555555544443333333332256788885
Q ss_pred ee
Q 015263 263 ET 264 (410)
Q Consensus 263 ET 264 (410)
+.
T Consensus 383 ~~ 384 (434)
T PRK14330 383 AK 384 (434)
T ss_pred Ec
Confidence 43
No 57
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=39.76 E-value=4.1e+02 Score=26.73 Aligned_cols=130 Identities=15% Similarity=0.207 Sum_probs=78.3
Q ss_pred CCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCcccCCCCCccCc------------ccccccCCC-------Ccc
Q 015263 166 YPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSL------------DFVLFQPNQ-------GIV 226 (410)
Q Consensus 166 ~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l------------~yAlf~~~~-------~v~ 226 (410)
+|...+.+.++..+.++.+.|-+.+.|+.+++.++. .+.......+. ......|+. .+.
T Consensus 64 ~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p 141 (336)
T cd02932 64 TPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAH--AGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTP 141 (336)
T ss_pred CCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccC--CCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCC
Confidence 454556777777888999999999999999888642 11111100000 000011110 000
Q ss_pred cCCCchhhhhHHHHHHHHHHHHHHHcCCCCccEEEeeec------cCC-CCCCCCCCCCHHHHHHHHHHHHHHHHccCC
Q 015263 227 DPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHISETG------WPS-KGDEDEAGATPENAKKYNGNLIKLISSKKG 298 (410)
Q Consensus 227 d~~~~~~y~nl~daqvDav~~Al~~~g~~~~~VvVsETG------WPS-~G~~~~~~As~~Na~~y~~~li~~~~~~~G 298 (410)
...+-..-..+.+..+++...|.+ +|+..++|..+--. .|. .-..++-+.+.+|-.+|...+++.+++..|
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~-aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG 219 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVE-AGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP 219 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC
Confidence 111222234577777788777754 79999999987532 252 222223468999999999999999987654
No 58
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=39.19 E-value=37 Score=35.25 Aligned_cols=33 Identities=18% Similarity=0.511 Sum_probs=30.0
Q ss_pred HHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEE
Q 015263 43 VIPLVKSIGATRVKLYDADPKVLKAFANTGVEFT 76 (410)
Q Consensus 43 v~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~ 76 (410)
-.++|+.+|+++||+.. +|.=..++.+.||+|.
T Consensus 327 gaqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~ 359 (367)
T PRK14019 327 GAQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVT 359 (367)
T ss_pred HHHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEE
Confidence 37899999999999999 8888888999999997
No 59
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=39.15 E-value=56 Score=35.04 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcCCCEEEe-------cc------CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015263 40 PENVIPLVKSIGATRVKL-------YD------AD-------PKVLKAFANTGVEFTVSLGNEYLA 85 (410)
Q Consensus 40 ~~~v~~llks~~i~~VRl-------Y~------~d-------~~vL~A~~~tgi~V~lGv~n~~l~ 85 (410)
.+++++|||++|++..|+ +- .+ .+++.++.+.||+-+|.++--+++
T Consensus 75 y~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP 140 (478)
T PRK09593 75 YKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCP 140 (478)
T ss_pred hHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCC
Confidence 589999999999887774 31 13 368899999999999999755544
No 60
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.98 E-value=75 Score=30.49 Aligned_cols=79 Identities=18% Similarity=0.350 Sum_probs=51.8
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHhhcCCCEEEeccCC-----hHHHHHHHhcCCeEEEEeccccccccCCHHHHHHHHHH
Q 015263 25 SIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDAD-----PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKS 99 (410)
Q Consensus 25 ~~GInYg~~~~nlps~~~v~~llks~~i~~VRlY~~d-----~~vL~A~~~tgi~V~lGv~n~~l~~~a~~~~A~~wv~~ 99 (410)
.+||.|-...-.++. . --+++|||+- ..+.++....-+.++|..-.....++ +....|++
T Consensus 44 TiGIDFk~kti~l~g----------~-~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sf---eni~~W~~- 108 (207)
T KOG0078|consen 44 TIGIDFKIKTIELDG----------K-KIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSF---ENIRNWIK- 108 (207)
T ss_pred eEEEEEEEEEEEeCC----------e-EEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHH---HHHHHHHH-
Confidence 678877655544544 1 2477888876 46777777666777777655443433 34456865
Q ss_pred HhhhhCCCCcEEEEEecccc
Q 015263 100 NVQAYLPATKITCITVGNEV 119 (410)
Q Consensus 100 ~V~~~~p~~~I~~I~VGNEv 119 (410)
+|..+.++ .+.-|.|||-.
T Consensus 109 ~I~e~a~~-~v~~~LvGNK~ 127 (207)
T KOG0078|consen 109 NIDEHASD-DVVKILVGNKC 127 (207)
T ss_pred HHHhhCCC-CCcEEEeeccc
Confidence 68887664 78889999964
No 61
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=38.82 E-value=5.1e+02 Score=28.03 Aligned_cols=64 Identities=23% Similarity=0.186 Sum_probs=40.6
Q ss_pred HHHHHhhhhCC-CCcEEEEEeccccccc------CCC-Cc-hhhHHHHHHH-HHHHHHhCCCCCCeEEee-eeec
Q 015263 96 WIKSNVQAYLP-ATKITCITVGNEVLTF------NDT-SL-SGCLLPAMES-VHTALVNLGLDKQVSVTT-AHSL 159 (410)
Q Consensus 96 wv~~~V~~~~p-~~~I~~I~VGNEvl~~------~~~-s~-~~~Ll~am~~-vr~aL~~~Gl~~~I~VsT-a~~~ 159 (410)
.+.+-|+.|-. .-.|-+|++.||.... .+. .+ ++++...|++ +.-+|++.|+..++|+=. .|++
T Consensus 209 Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~ 283 (496)
T PF02055_consen 209 YFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNR 283 (496)
T ss_dssp HHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEG
T ss_pred HHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCC
Confidence 34455666532 3579999999999863 111 11 5667777876 899999999955677644 4554
No 62
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=38.45 E-value=73 Score=29.78 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=64.4
Q ss_pred HHHHHHHHhhhhCCCCcEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCcc
Q 015263 93 AKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGA 172 (410)
Q Consensus 93 A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~ 172 (410)
...|+.+.+..+ |...+....+= ....-.+++.+.+.+...|+.+ |++.+.... ++|.
T Consensus 57 ~n~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~G-v~l~~~~~~------~~~~--- 114 (273)
T PF04909_consen 57 FNDWLVELAAKH-PDRFIGFAAIP-----------PPDPEDAVEELERALQELGFRG-VKLHPDLGG------FDPD--- 114 (273)
T ss_dssp HHHHHHHHHHHS-TTTEEEEEEET-----------TTSHHHHHHHHHHHHHTTTESE-EEEESSETT------CCTT---
T ss_pred HHHHHHHHHHHc-CCCEEEEEEec-----------CCCchhHHHHHHHhccccceee-eEecCCCCc------cccc---
Confidence 355666666665 43333333321 1123367888888888888863 776653321 1111
Q ss_pred ccccchhhh-hhhhhhhhhcCCceeeecC-CCcccCCCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHH
Q 015263 173 FRKDLVDCI-TPILDFHVKTASPFLINAY-PYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALA 250 (410)
Q Consensus 173 F~~dl~~~l-~~~ldfL~~t~sp~~vNiy-Pyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~ 250 (410)
.+.. .++.+.+.+.+-|+.+|+- +.+.. ......+...+...++
T Consensus 115 -----~~~~~~~~~~~~~~~~~pv~~H~g~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 160 (273)
T PF04909_consen 115 -----DPRLDDPIFEAAEELGLPVLIHTGMTGFPD-----------------------------APSDPADPEELEELLE 160 (273)
T ss_dssp -----SGHCHHHHHHHHHHHT-EEEEEESHTHHHH-----------------------------HHHHHHHHHHHTTHHH
T ss_pred -----cHHHHHHHHHHHHhhccceeeeccccchhh-----------------------------hhHHHHHHHHHHHHHH
Confidence 1233 3888899999988888753 11100 0111112222333344
Q ss_pred HcCCCCccEEEeeeccC
Q 015263 251 SLGYKKLLLHISETGWP 267 (410)
Q Consensus 251 ~~g~~~~~VvVsETGWP 267 (410)
+ +|+++|++.+.|+|
T Consensus 161 ~--~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 161 R--FPDLRIILAHLGGP 175 (273)
T ss_dssp H--STTSEEEESGGGTT
T ss_pred H--hcCCeEEEecCccc
Confidence 4 79999999999999
No 63
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=38.42 E-value=84 Score=25.27 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=30.8
Q ss_pred CCcEEEEEeccc-cccc--------CCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeee
Q 015263 107 ATKITCITVGNE-VLTF--------NDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTA 156 (410)
Q Consensus 107 ~~~I~~I~VGNE-vl~~--------~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa 156 (410)
+.+|.+-=|+|| .... ++. ..+.+.+.|+++-+.+|+..= ..|||+.
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~iR~~dP--~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDP-KAEAYAEWLKEAFRWIRAVDP--SQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-T-TSHHHHHHHHHHHHHHHTT-T--TS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccch-hHHHHHHHHHHHHHHHHHhCC--CCcEEee
Confidence 468999999999 5411 111 257889999999999998764 4677654
No 64
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.35 E-value=3.6e+02 Score=28.56 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=68.3
Q ss_pred EEEEEec-----cccccc--CCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhh
Q 015263 110 ITCITVG-----NEVLTF--NDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCIT 182 (410)
Q Consensus 110 I~~I~VG-----NEvl~~--~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~ 182 (410)
...|.+| +++|-. -..+ ..+...+++.+|++.. .+.++|.. +- .|| | |-.+.+.
T Consensus 261 ~~~l~lgvQSgsd~vLk~m~R~~t-~~~~~~~i~~lr~~~p------~i~i~td~----Iv-GfP---g----ET~edf~ 321 (449)
T PRK14332 261 CPNIHLPLQAGNTRVLEEMKRSYS-KEEFLDVVKEIRNIVP------DVGITTDI----IV-GFP---N----ETEEEFE 321 (449)
T ss_pred cceEEECCCcCCHHHHHhhCCCCC-HHHHHHHHHHHHHhCC------CCEEEEEE----Ee-eCC---C----CCHHHHH
Confidence 4567777 444432 1223 6778888888887632 35565532 22 255 1 2223455
Q ss_pred hhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcCCCCccEEEe
Q 015263 183 PILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLGYKKLLLHIS 262 (410)
Q Consensus 183 ~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g~~~~~VvVs 262 (410)
..++|+.+.+-. .+++|+|-.....|. +..+. ..+.+.....++..+.+.|-.-.....++.=....+|+|.
T Consensus 322 ~tl~~v~~l~~~-~~~~f~ys~~~GT~a-----~~~~~--~~v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve 393 (449)
T PRK14332 322 DTLAVVREVQFD-MAFMFKYSEREGTMA-----KRKLP--DNVPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIE 393 (449)
T ss_pred HHHHHHHhCCCC-EEEEEEecCCCCChh-----HHhCc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 667787665533 567777765544331 11121 1122223345666676666554444444443356888886
Q ss_pred eec
Q 015263 263 ETG 265 (410)
Q Consensus 263 ETG 265 (410)
|.+
T Consensus 394 ~~~ 396 (449)
T PRK14332 394 NTS 396 (449)
T ss_pred ecc
Confidence 544
No 65
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=36.00 E-value=52 Score=34.44 Aligned_cols=38 Identities=24% Similarity=0.527 Sum_probs=33.3
Q ss_pred HHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEec
Q 015263 43 VIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLG 80 (410)
Q Consensus 43 v~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (410)
-.++|+.+|+++||+...+|.=..++.+.||+|.==++
T Consensus 319 gAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 319 AFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 47899999999999999999888899999999974444
No 66
>PRK08815 GTP cyclohydrolase; Provisional
Probab=35.65 E-value=53 Score=34.25 Aligned_cols=38 Identities=21% Similarity=0.510 Sum_probs=32.7
Q ss_pred HHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEec
Q 015263 43 VIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLG 80 (410)
Q Consensus 43 v~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (410)
-.++|+.+|+++||+.+.++.=..++.+.||+|.==++
T Consensus 304 gAQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 304 AVAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 37899999999999999999888899999999973343
No 67
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.56 E-value=65 Score=33.86 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=32.8
Q ss_pred HHHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEe
Q 015263 42 NVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSL 79 (410)
Q Consensus 42 ~v~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~lGv 79 (410)
-..++|+.+|+++||+...+|.=..++.+.||+|.==+
T Consensus 337 ~gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v 374 (402)
T PRK09311 337 IGAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERV 374 (402)
T ss_pred HHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEe
Confidence 34789999999999999999988889999999997333
No 68
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=35.56 E-value=67 Score=35.19 Aligned_cols=39 Identities=15% Similarity=0.379 Sum_probs=34.0
Q ss_pred HHHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEec
Q 015263 42 NVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLG 80 (410)
Q Consensus 42 ~v~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (410)
-..++|+.+|+++||+..-+|.=+.++.+.||+|.==++
T Consensus 341 igAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 341 VGAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 347899999999999999999999999999999974444
No 69
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=35.45 E-value=86 Score=26.74 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCEEEec--cCC---hHHHHHHHhcCCeEE
Q 015263 41 ENVIPLVKSIGATRVKLY--DAD---PKVLKAFANTGVEFT 76 (410)
Q Consensus 41 ~~v~~llks~~i~~VRlY--~~d---~~vL~A~~~tgi~V~ 76 (410)
+++.+.++.+|++.|+++ +.. ..+|++++..|++|.
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~ 90 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVT 90 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 456677788999999998 333 579999999999874
No 70
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=35.36 E-value=1.2e+02 Score=32.35 Aligned_cols=47 Identities=15% Similarity=0.180 Sum_probs=36.1
Q ss_pred CHHHHHHHHhhcCCCEEEe-------cc-----CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015263 39 TPENVIPLVKSIGATRVKL-------YD-----AD-------PKVLKAFANTGVEFTVSLGNEYLA 85 (410)
Q Consensus 39 s~~~v~~llks~~i~~VRl-------Y~-----~d-------~~vL~A~~~tgi~V~lGv~n~~l~ 85 (410)
..+++++|||.+|++..|+ += .+ .+++.++.+.||+-+|.++--+++
T Consensus 54 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP 119 (467)
T TIGR01233 54 KYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTP 119 (467)
T ss_pred hHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 3689999999998877764 31 12 368899999999999999865544
No 71
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=35.31 E-value=67 Score=34.41 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=35.1
Q ss_pred CHHHHHHHHhhcCCCEEEe-------cc------CC-------hHHHHHHHhcCCeEEEEeccccc
Q 015263 39 TPENVIPLVKSIGATRVKL-------YD------AD-------PKVLKAFANTGVEFTVSLGNEYL 84 (410)
Q Consensus 39 s~~~v~~llks~~i~~VRl-------Y~------~d-------~~vL~A~~~tgi~V~lGv~n~~l 84 (410)
..+++++|||++|++..|+ +- .+ .+++.++.+.||+.+|.++--++
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dl 135 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEM 135 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCC
Confidence 3689999999998877764 31 13 36899999999999999954333
No 72
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=35.23 E-value=50 Score=33.94 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHhhcCCCEEEeccCC-hHHHHHHHhcCCeEE
Q 015263 37 LPTPENVIPLVKSIGATRVKLYDAD-PKVLKAFANTGVEFT 76 (410)
Q Consensus 37 lps~~~v~~llks~~i~~VRlY~~d-~~vL~A~~~tgi~V~ 76 (410)
.-+..--.++|+.+|+++||+...+ |.-..++.+.||+|.
T Consensus 294 ~RdygigaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 294 VKDYGIGAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred ccchhHHHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4445556789999999999999999 888888999999985
No 73
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=33.10 E-value=79 Score=33.79 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=33.2
Q ss_pred HHHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEec
Q 015263 42 NVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLG 80 (410)
Q Consensus 42 ~v~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (410)
--.++|+.+|+++||+...+|.=+.++.+.||+|.==++
T Consensus 371 igAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 371 IGAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 347899999999999999999888899999999973333
No 74
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.49 E-value=5e+02 Score=25.63 Aligned_cols=129 Identities=12% Similarity=0.175 Sum_probs=77.6
Q ss_pred cCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCC-------CCcccCCCchhhhhH
Q 015263 165 SYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPN-------QGIVDPASNLHYDNM 237 (410)
Q Consensus 165 s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~-------~~v~d~~~~~~y~nl 237 (410)
.+|...+.+.++..+.+++++|.+.+.|+.+.+.++.- +.......... ....|+ .......+...-..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~--G~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~mt~~ei~~~ 139 (327)
T cd02803 63 GYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA--GRQAQPNLTGG-PPPAPSAIPSPGGGEPPREMTKEEIEQI 139 (327)
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC--CcCCCCcCCCC-CccCCCCCCCCCCCCCCCcCCHHHHHHH
Confidence 46777788888888899999999999999988776421 11100000000 000000 011111222234456
Q ss_pred HHHHHHHHHHHHHHcCCCCccEEEeeec-------cCCC-CCCCCCCCCHHHHHHHHHHHHHHHHccCC
Q 015263 238 LFAQIDAVYAALASLGYKKLLLHISETG-------WPSK-GDEDEAGATPENAKKYNGNLIKLISSKKG 298 (410)
Q Consensus 238 ~daqvDav~~Al~~~g~~~~~VvVsETG-------WPS~-G~~~~~~As~~Na~~y~~~li~~~~~~~G 298 (410)
.+..+++...|. ++|+..++|+.+ -| .|.. -..++-+.+.+|-.+|..+.++.+++..|
T Consensus 140 i~~~~~aA~~a~-~aGfDgveih~~-~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g 206 (327)
T cd02803 140 IEDFAAAARRAK-EAGFDGVEIHGA-HGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVG 206 (327)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEcch-hhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcC
Confidence 666777776664 479999999985 23 3532 11223467899999999999999986544
No 75
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=31.86 E-value=71 Score=33.83 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=33.3
Q ss_pred ecCCCCCCCCHHHHHHHHhhcCCCEEEeccCC------hHHHHHHHhcCCeEEEEec
Q 015263 30 YGQIANNLPTPENVIPLVKSIGATRVKLYDAD------PKVLKAFANTGVEFTVSLG 80 (410)
Q Consensus 30 Yg~~~~nlps~~~v~~llks~~i~~VRlY~~d------~~vL~A~~~tgi~V~lGv~ 80 (410)
|-.|.||. .+..++....+|++.+|+||+- ...++|++++|..+...+-
T Consensus 92 YrhyaDDv--Ve~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~ 146 (472)
T COG5016 92 YRHYADDV--VEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTIS 146 (472)
T ss_pred ccCCchHH--HHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEE
Confidence 44444433 2344555566899999999984 4577888999987766554
No 76
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=31.27 E-value=4.7e+02 Score=24.88 Aligned_cols=106 Identities=18% Similarity=0.211 Sum_probs=67.0
Q ss_pred CCHHHHHHHHhhcCCCEEEeccCC-----------hHHHHHHHhcCCeEEEEecccc---ccccC---CHHHHHHHHHHH
Q 015263 38 PTPENVIPLVKSIGATRVKLYDAD-----------PKVLKAFANTGVEFTVSLGNEY---LAKMR---DPDCAKAWIKSN 100 (410)
Q Consensus 38 ps~~~v~~llks~~i~~VRlY~~d-----------~~vL~A~~~tgi~V~lGv~n~~---l~~~a---~~~~A~~wv~~~ 100 (410)
|+. +..+.+|+.+++.|=.|=++ +.=++.+...|++|+. |++.. ..... ...+|..-++.+
T Consensus 21 ~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~A 98 (212)
T cd06418 21 PTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAAA 98 (212)
T ss_pred CCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHHH
Confidence 454 66777888888877777433 2345678889999865 44432 12221 223444444444
Q ss_pred hhhhCCCCcEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCC
Q 015263 101 VQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLD 148 (410)
Q Consensus 101 V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl~ 148 (410)
..--.|...+.++.|=..... . +....++|+++-+.++|...||.
T Consensus 99 ~~lG~p~gs~IYfavD~d~~~-~--~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 99 RALGFPPGTIIYFAVDFDALD-D--EVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHcCCCCCCEEEEEeecCCCc-c--hhHHHHHHHHHHHHHHHHhcCCc
Confidence 443347666778888544321 1 23578999999999999999875
No 77
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=30.76 E-value=1.2e+02 Score=28.76 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=39.1
Q ss_pred ceeEEecCCCCCCCCHHHHHHHHhhcCCCEEEeccC---C-hHHHHHHHhcCCeEEE
Q 015263 25 SIGINYGQIANNLPTPENVIPLVKSIGATRVKLYDA---D-PKVLKAFANTGVEFTV 77 (410)
Q Consensus 25 ~~GInYg~~~~nlps~~~v~~llks~~i~~VRlY~~---d-~~vL~A~~~tgi~V~l 77 (410)
.+.||++....++ +.++.++.++..|++.|-++.. + ..+.+.++++|++|..
T Consensus 2 ~~~~~~~~~~~~~-~l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 2 RFAANLSMLFTEL-PFLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred ceeEehhHhhcCC-CHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEE
Confidence 3568877655554 5789999999999999998642 2 4567778899999753
No 78
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=30.57 E-value=1.1e+02 Score=26.57 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCEEEec--c--------CC---hHHHHHHHhcCCeEE
Q 015263 41 ENVIPLVKSIGATRVKLY--D--------AD---PKVLKAFANTGVEFT 76 (410)
Q Consensus 41 ~~v~~llks~~i~~VRlY--~--------~d---~~vL~A~~~tgi~V~ 76 (410)
+++.+.++.+|++.|+++ + .. ..+|++++..||+|.
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~ 101 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 101 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 566777888999988887 3 23 579999999999974
No 79
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.56 E-value=6.9e+02 Score=26.67 Aligned_cols=185 Identities=16% Similarity=0.181 Sum_probs=92.7
Q ss_pred ceeEEecCCCCCCCC----HHHHHHHHhh-cCCCEEEeccCC-----hHHHHHHHhc-CCeEEEEeccccccccCCHHHH
Q 015263 25 SIGINYGQIANNLPT----PENVIPLVKS-IGATRVKLYDAD-----PKVLKAFANT-GVEFTVSLGNEYLAKMRDPDCA 93 (410)
Q Consensus 25 ~~GInYg~~~~nlps----~~~v~~llks-~~i~~VRlY~~d-----~~vL~A~~~t-gi~V~lGv~n~~l~~~a~~~~A 93 (410)
.+|.|-+.||-|++. ..+.++.+.. .|+.+||+=..+ .+++++++.+ .+-=.+-+|. ++-+|
T Consensus 195 L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~~~~~~~kv~~~lHlPv---QsGsd---- 267 (437)
T COG0621 195 LTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIEAIAETPKVCPHLHLPV---QSGSD---- 267 (437)
T ss_pred EEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHHHHhcCCcccccccCcc---ccCCH----
Confidence 458888888888753 3344443322 467888887666 4688887764 3332333332 22211
Q ss_pred HHHHHHHhhhhCCCCcEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccc
Q 015263 94 KAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAF 173 (410)
Q Consensus 94 ~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F 173 (410)
.|++ .|.|.. + .++.+..++.+|++.. .+.++|..- . .|| |+=
T Consensus 268 ------~ILk---------------~M~R~y-t-~e~~~~~i~k~R~~~P------d~~i~tDiI----V-GFP---gET 310 (437)
T COG0621 268 ------RILK---------------RMKRGY-T-VEEYLEIIEKLRAARP------DIAISTDII----V-GFP---GET 310 (437)
T ss_pred ------HHHH---------------HhCCCc-C-HHHHHHHHHHHHHhCC------CceEeccEE----E-ECC---CCC
Confidence 0111 123332 2 5777888888888764 344555432 1 266 222
Q ss_pred cccchhhhhhhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCCCcccCCCchhhhhHHHHHHHHHHHHHHHcC
Q 015263 174 RKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQGIVDPASNLHYDNMLFAQIDAVYAALASLG 253 (410)
Q Consensus 174 ~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~~v~d~~~~~~y~nl~daqvDav~~Al~~~g 253 (410)
.+|. ...+||+.+.+ +=.+|++||=..-..|. |.+. ..+.+.....+..-|..-+-+.....+++.-
T Consensus 311 eedF----e~tl~lv~e~~-fd~~~~F~YSpRpGTpA------a~~~--~qvp~~vkkeR~~~L~~l~~~~~~~~~~~~v 377 (437)
T COG0621 311 EEDF----EETLDLVEEVR-FDRLHVFKYSPRPGTPA------ALMP--DQVPEEVKKERLRRLQELQQQISAEFNQKLV 377 (437)
T ss_pred HHHH----HHHHHHHHHhC-CCEEeeeecCCCCCCcc------ccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2222 23445554443 24788888765444431 1111 0111111223444444444444444444443
Q ss_pred CCCccEEEeeecc
Q 015263 254 YKKLLLHISETGW 266 (410)
Q Consensus 254 ~~~~~VvVsETGW 266 (410)
....+|+|.|-++
T Consensus 378 G~~~~VLVe~~~~ 390 (437)
T COG0621 378 GKTLEVLVEEGGS 390 (437)
T ss_pred CCEEEEEEEeccC
Confidence 3568888876433
No 80
>PRK09989 hypothetical protein; Provisional
Probab=29.99 E-value=4.9e+02 Score=24.73 Aligned_cols=51 Identities=10% Similarity=0.178 Sum_probs=39.2
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhhcCCCEEEec---cCC-hHHHHHHHhcCCeEEE
Q 015263 26 IGINYGQIANNLPTPENVIPLVKSIGATRVKLY---DAD-PKVLKAFANTGVEFTV 77 (410)
Q Consensus 26 ~GInYg~~~~nlps~~~v~~llks~~i~~VRlY---~~d-~~vL~A~~~tgi~V~l 77 (410)
+.+|.+..-.++ |.++.++.++..||+.|-+. +.+ .++.+.++++|+++..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 4 FAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred eeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 566777666665 56788999999999999983 333 4677788899999876
No 81
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=29.93 E-value=4.9e+02 Score=24.72 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=37.3
Q ss_pred eeEEecCCCCCCCCHHHHHHHHhhcCCCEEEeccC---C-hHHHHHHHhcCCeEEE
Q 015263 26 IGINYGQIANNLPTPENVIPLVKSIGATRVKLYDA---D-PKVLKAFANTGVEFTV 77 (410)
Q Consensus 26 ~GInYg~~~~nlps~~~v~~llks~~i~~VRlY~~---d-~~vL~A~~~tgi~V~l 77 (410)
+.+|.+..-.++ +.++.++.++..||+.|-+... + ..+.+.++++||++..
T Consensus 4 ~~~~~~~~~~~~-~l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 4 FSANLSMLFGEY-DFLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeeeehhccCC-CHHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 345555444445 3688899999999999998753 3 4677788899999975
No 82
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=29.73 E-value=1.1e+02 Score=26.73 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=35.7
Q ss_pred HHHHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEec
Q 015263 42 NVIPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLG 80 (410)
Q Consensus 42 ~v~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~lGv~ 80 (410)
.+.++|+.+|++.|=+...-+..+.+|++.||+|+.+..
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 578999999999998888889999999999999999977
No 83
>PF12365 DUF3649: Protein of unknown function (DUF3649) ; InterPro: IPR022109 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length.
Probab=29.27 E-value=72 Score=20.91 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=18.3
Q ss_pred cccchhhhhh-hhHHHHHHHHHHHhcC
Q 015263 385 SATKARYEFV-GSVMLVLVFFLISLLL 410 (410)
Q Consensus 385 ~~~~~~~~~~-~~~~~~~~~~~~~~~~ 410 (410)
++.++.||.| |.+..-+++.++..++
T Consensus 2 Fa~rsa~rAW~Gll~~a~~l~~~~~~l 28 (28)
T PF12365_consen 2 FAARSAWRAWLGLLLPAALLALLAWLL 28 (28)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567889955 6777777777776654
No 84
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.99 E-value=1.3e+02 Score=26.46 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=31.3
Q ss_pred CHHHHHHHHhhcCCCEEEeccC---------------------C--hHHHHHHHhcCCeEEEEecc
Q 015263 39 TPENVIPLVKSIGATRVKLYDA---------------------D--PKVLKAFANTGVEFTVSLGN 81 (410)
Q Consensus 39 s~~~v~~llks~~i~~VRlY~~---------------------d--~~vL~A~~~tgi~V~lGv~n 81 (410)
++++.++.||..+++.|-+|.- | .++++|+.+.||+|++=+-.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEee
Confidence 3667777777777777777542 1 36788999999999877654
No 85
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=28.18 E-value=1.5e+02 Score=29.45 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=32.6
Q ss_pred CCCccEEEeeeccCCCCCCCC-CCCCHHHHHHHHHHHHHHHHc
Q 015263 254 YKKLLLHISETGWPSKGDEDE-AGATPENAKKYNGNLIKLISS 295 (410)
Q Consensus 254 ~~~~~VvVsETGWPS~G~~~~-~~As~~Na~~y~~~li~~~~~ 295 (410)
.++++|+|+=-||........ ..+++++.++|.+++++.+++
T Consensus 64 ~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~ 106 (299)
T cd02879 64 NPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSIKVARK 106 (299)
T ss_pred CCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHH
Confidence 478999999888976433332 457889999999999999874
No 86
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=27.72 E-value=1e+02 Score=34.09 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=27.8
Q ss_pred HHHHHhhcCCCEEEeccCC------hHHHHHHHhcCCeEEEEec
Q 015263 43 VIPLVKSIGATRVKLYDAD------PKVLKAFANTGVEFTVSLG 80 (410)
Q Consensus 43 v~~llks~~i~~VRlY~~d------~~vL~A~~~tgi~V~lGv~ 80 (410)
.++..+.+|++.+|+||+- ...++++++.|..+...+-
T Consensus 101 ~v~~a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~ 144 (596)
T PRK14042 101 FVKLAVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAIC 144 (596)
T ss_pred HHHHHHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEE
Confidence 3455667899999999864 2356777889987776644
No 87
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=27.59 E-value=4e+02 Score=24.90 Aligned_cols=55 Identities=11% Similarity=0.133 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHcCCCCccEEEee-eccCCCCCCCC-CCCCHHHHHHHHHHHHHHHH
Q 015263 234 YDNMLFAQIDAVYAALASLGYKKLLLHISE-TGWPSKGDEDE-AGATPENAKKYNGNLIKLIS 294 (410)
Q Consensus 234 y~nl~daqvDav~~Al~~~g~~~~~VvVsE-TGWPS~G~~~~-~~As~~Na~~y~~~li~~~~ 294 (410)
+..-+...|+.++ .++|++||++.| .++|.. ..+. ...+.+......+..++.++
T Consensus 76 ~~~~~~~fv~~iR-----~~hP~tPIllv~~~~~~~~-~~~~~~~~~~~~~~~~~r~~v~~l~ 132 (178)
T PF14606_consen 76 FRERLDGFVKTIR-----EAHPDTPILLVSPIPYPAG-YFDNSRGETVEEFREALREAVEQLR 132 (178)
T ss_dssp HHHHHHHHHHHHH-----TT-SSS-EEEEE----TTT-TS--TTS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HhCCCCCEEEEecCCcccc-ccCchHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555543 468999999999 455554 3332 45677777777777777775
No 88
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=27.52 E-value=1.2e+02 Score=32.08 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=57.4
Q ss_pred ChHHHHHHHhcCCeEEEEecccc--ccccC--------CHHHHHHHHHHHhhhhCCCCcEEEEEecccccccCCCCchhh
Q 015263 61 DPKVLKAFANTGVEFTVSLGNEY--LAKMR--------DPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFNDTSLSGC 130 (410)
Q Consensus 61 d~~vL~A~~~tgi~V~lGv~n~~--l~~~a--------~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~ 130 (410)
+..+++..+..+++.++++-|.. ...+. +.+.+.+-+.+++..-+....+++|.+.=|.+..+| -+.
T Consensus 149 ~~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~~~D---R~~ 225 (423)
T COG3858 149 NENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVGPGD---REL 225 (423)
T ss_pred CcchhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCCHHH---HHH
Confidence 35788888899999999999876 22221 112222223333333334456888999989887655 345
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 015263 131 LLPAMESVHTALVNLGLD 148 (410)
Q Consensus 131 Ll~am~~vr~aL~~~Gl~ 148 (410)
.--.|+.+|.+|.+.|+.
T Consensus 226 yt~flR~~r~~l~~~G~~ 243 (423)
T COG3858 226 YTDFLRQVRDALHSGGYT 243 (423)
T ss_pred HHHHHHHHHHHhccCCeE
Confidence 667799999999998874
No 89
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.44 E-value=6e+02 Score=24.90 Aligned_cols=92 Identities=10% Similarity=0.061 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCCCEEEeccCC------hHHHHHHHhcCCeEEEEeccccccccCCHHHHHHHHHHHhhhhCCCCcEEEEE
Q 015263 41 ENVIPLVKSIGATRVKLYDAD------PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITCIT 114 (410)
Q Consensus 41 ~~v~~llks~~i~~VRlY~~d------~~vL~A~~~tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~~~I~~I~ 114 (410)
+++++.....|++.||++..- ...++.+++.|+++...+-..+. ...+++....++++. ... + +..|.
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~-~~~-G---a~~i~ 167 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGS-PVHTLEYYVKLAKEL-EDM-G---ADSIC 167 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CCCCHHHHHHHHHHH-HHc-C---CCEEE
Confidence 455666667789999999653 23455667889998876632111 222454444444433 222 2 22333
Q ss_pred ecccccccCCCCchhhHHHHHHHHHHHH
Q 015263 115 VGNEVLTFNDTSLSGCLLPAMESVHTAL 142 (410)
Q Consensus 115 VGNEvl~~~~~s~~~~Ll~am~~vr~aL 142 (410)
+..- -|-.+ +.++-..++.+|+.+
T Consensus 168 l~DT---~G~~~-P~~v~~lv~~l~~~~ 191 (275)
T cd07937 168 IKDM---AGLLT-PYAAYELVKALKKEV 191 (275)
T ss_pred EcCC---CCCCC-HHHHHHHHHHHHHhC
Confidence 3221 12233 677777777777653
No 90
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=27.36 E-value=1.1e+02 Score=32.78 Aligned_cols=40 Identities=25% Similarity=0.422 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCCCEEEeccCC------hHHHHHHHhcCCeEEEEec
Q 015263 41 ENVIPLVKSIGATRVKLYDAD------PKVLKAFANTGVEFTVSLG 80 (410)
Q Consensus 41 ~~v~~llks~~i~~VRlY~~d------~~vL~A~~~tgi~V~lGv~ 80 (410)
+..++..+.+|++.+|+||.- ...++++++.|..+.+.+-
T Consensus 108 ~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred HHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEE
Confidence 334667778999999999864 3455677889988665444
No 91
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=27.34 E-value=1.9e+02 Score=24.58 Aligned_cols=110 Identities=19% Similarity=0.244 Sum_probs=55.8
Q ss_pred HHHhhcCCCEEEeccCC----------hHHHHHHHhcCCeEEEEeccccccccCCHHHHHHHHHHHhhhhCCCCcEEEEE
Q 015263 45 PLVKSIGATRVKLYDAD----------PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITCIT 114 (410)
Q Consensus 45 ~llks~~i~~VRlY~~d----------~~vL~A~~~tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~~~I~~I~ 114 (410)
+-|.++|.++|-+-..+ ....+++++.|++...-.................|+++. .| ++|+
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~p----daii 73 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL----RP----DAII 73 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC----SS----SEEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC----CC----cEEE
Confidence 33455688888877633 235577888999854433221111100111122355332 23 4888
Q ss_pred ecccccccCCCCchhhHHHHHHHHHHHHHhCCC--CCCeEEeeeeecccccccCCCCCccccccc
Q 015263 115 VGNEVLTFNDTSLSGCLLPAMESVHTALVNLGL--DKQVSVTTAHSLGVLGSSYPPSAGAFRKDL 177 (410)
Q Consensus 115 VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl--~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl 177 (410)
+.|+.+. . .+..+|++.|+ .+++.|-+-+........+ |....+..+.
T Consensus 74 ~~~~~~a-------~-------~~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~-p~it~i~~~~ 123 (160)
T PF13377_consen 74 CSNDRLA-------L-------GVLRALRELGIRVPQDISVVSFDDSPLLEFFS-PPITTIDQDP 123 (160)
T ss_dssp ESSHHHH-------H-------HHHHHHHHTTSCTTTTSEEEEESSSGHHHCSS-STSEEEEE-H
T ss_pred EcCHHHH-------H-------HHHHHHHHcCCcccccccEEEecCcHHHHHHc-CCCceecCCH
Confidence 8886542 1 23345666776 4678888776544443323 3455555444
No 92
>PRK07198 hypothetical protein; Validated
Probab=26.95 E-value=58 Score=34.24 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=32.9
Q ss_pred HHHHHhhcCCCEE-EeccCChHHHHHHHhcCCeEEEEec
Q 015263 43 VIPLVKSIGATRV-KLYDADPKVLKAFANTGVEFTVSLG 80 (410)
Q Consensus 43 v~~llks~~i~~V-RlY~~d~~vL~A~~~tgi~V~lGv~ 80 (410)
-.++|+.+|+++| |+.+..+.-..++.+.||+|.==++
T Consensus 337 GAQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 337 MPDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 3679999999999 9999999888899999999974443
No 93
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=26.89 E-value=1.1e+02 Score=30.04 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=38.8
Q ss_pred HhcCCeEEEEecccc-----ccccC-CHHHHHHHHHHHhhhhCCCCcEEEEEecccccccC-CCCchhhHHHHHHHHHHH
Q 015263 69 ANTGVEFTVSLGNEY-----LAKMR-DPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFN-DTSLSGCLLPAMESVHTA 141 (410)
Q Consensus 69 ~~tgi~V~lGv~n~~-----l~~~a-~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~-~~s~~~~Ll~am~~vr~a 141 (410)
++.|+||++.|.... ...+. +++.. .-+.++|..++....+.+|-+==|..... +.+....+...|+.+|.+
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r-~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~ 148 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKR-QNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKA 148 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHH-HHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHH-HHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhh
Confidence 356999988776542 12222 33222 22233333332222466666633443221 112367888999999999
Q ss_pred HHhC
Q 015263 142 LVNL 145 (410)
Q Consensus 142 L~~~ 145 (410)
|++.
T Consensus 149 l~~~ 152 (343)
T PF00704_consen 149 LKRA 152 (343)
T ss_dssp HHHH
T ss_pred hccc
Confidence 9885
No 94
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=26.04 E-value=1.3e+02 Score=26.21 Aligned_cols=44 Identities=18% Similarity=0.346 Sum_probs=36.1
Q ss_pred CCHHHHHHHHhhcCCCEEEeccCC-----hHHHHHHHhcCCeEEEEecc
Q 015263 38 PTPENVIPLVKSIGATRVKLYDAD-----PKVLKAFANTGVEFTVSLGN 81 (410)
Q Consensus 38 ps~~~v~~llks~~i~~VRlY~~d-----~~vL~A~~~tgi~V~lGv~n 81 (410)
.++++.++..++.|++.|=+=|-+ +.-.+.++..||++++|+-.
T Consensus 16 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E~ 64 (175)
T PF02811_consen 16 DSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVEI 64 (175)
T ss_dssp SSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEee
Confidence 478999999999999988887654 45566677799999999985
No 95
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=25.94 E-value=2.8e+02 Score=27.67 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=41.4
Q ss_pred HHHHHhcCCeEEEEeccccccc-cCCHHHHHHHHHHHhhhhCCCCcEEEEEecccccccCC--CCchhhHHHHHHHHHHH
Q 015263 65 LKAFANTGVEFTVSLGNEYLAK-MRDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFND--TSLSGCLLPAMESVHTA 141 (410)
Q Consensus 65 L~A~~~tgi~V~lGv~n~~l~~-~a~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~--~s~~~~Ll~am~~vr~a 141 (410)
++.+++.|+||+|.+.-..-.. +.+...+ ..+.+++..++..-.+.+|=+==|.-.... ......++..++.+|.+
T Consensus 66 i~~~q~~G~KVllSiGG~~~~~~~~~~~~~-~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~ 144 (312)
T cd02871 66 IKALQAKGKKVLISIGGANGHVDLNHTAQE-DNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDH 144 (312)
T ss_pred HHHHHHCCCEEEEEEeCCCCccccCCHHHH-HHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHH
Confidence 4566778999999886433222 2233322 233444444433334555555444321110 11136788888988887
Q ss_pred HH
Q 015263 142 LV 143 (410)
Q Consensus 142 L~ 143 (410)
+.
T Consensus 145 ~~ 146 (312)
T cd02871 145 YG 146 (312)
T ss_pred cC
Confidence 64
No 96
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=25.60 E-value=1.8e+02 Score=31.29 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCCCEEEe-------cc------CC-------hHHHHHHHhcCCeEEEEecccccc
Q 015263 40 PENVIPLVKSIGATRVKL-------YD------AD-------PKVLKAFANTGVEFTVSLGNEYLA 85 (410)
Q Consensus 40 ~~~v~~llks~~i~~VRl-------Y~------~d-------~~vL~A~~~tgi~V~lGv~n~~l~ 85 (410)
.++++++|+.+|++..|+ +- .+ .+++.++.+.||+.+|.+.--+++
T Consensus 73 y~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P 138 (474)
T PRK09852 73 YKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVP 138 (474)
T ss_pred hHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCC
Confidence 489999999998877764 21 13 368899999999999999765544
No 97
>CHL00041 rps11 ribosomal protein S11
Probab=25.47 E-value=1.6e+02 Score=25.45 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCEEEec--cC--C-hHHHHHHHhcCCeEE
Q 015263 41 ENVIPLVKSIGATRVKLY--DA--D-PKVLKAFANTGVEFT 76 (410)
Q Consensus 41 ~~v~~llks~~i~~VRlY--~~--d-~~vL~A~~~tgi~V~ 76 (410)
+++.+.++.+|++.|+++ +. - ..++++++..|++|.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 455667778899988888 23 2 679999999999874
No 98
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=25.46 E-value=6.9e+02 Score=25.95 Aligned_cols=103 Identities=14% Similarity=0.115 Sum_probs=59.5
Q ss_pred HHHHHHHhhcCCCEEEeccC----------C------------hHHHHHHHhcCCeEEEEecccc-------cc----cc
Q 015263 41 ENVIPLVKSIGATRVKLYDA----------D------------PKVLKAFANTGVEFTVSLGNEY-------LA----KM 87 (410)
Q Consensus 41 ~~v~~llks~~i~~VRlY~~----------d------------~~vL~A~~~tgi~V~lGv~n~~-------l~----~~ 87 (410)
+++...+|+.||+.|||.-. + .++++.+.+.||.|++-.-.-. .. .+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 78889999999999999732 2 1356667789999998753211 10 11
Q ss_pred CC-----HHHHHHHHHHHhhhhCCCCcEEEEEecccccc-cCCCCchhhHH-HHHHHHHHHHHhC
Q 015263 88 RD-----PDCAKAWIKSNVQAYLPATKITCITVGNEVLT-FNDTSLSGCLL-PAMESVHTALVNL 145 (410)
Q Consensus 88 a~-----~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~-~~~~s~~~~Ll-~am~~vr~aL~~~ 145 (410)
.. ......| +.-...|-....|.++-+=||... ..+. .+..-. +|...|++++...
T Consensus 156 ~~~~~~~~~~~~~w-~~ia~~f~~~~~VIg~~~~NEP~~~~~~~-~w~~~~~~A~~~v~~~i~~~ 218 (407)
T COG2730 156 KEENENVEATIDIW-KFIANRFKNYDTVIGFELINEPNGIVTSE-TWNGGDDEAYDVVRNAILSN 218 (407)
T ss_pred cccchhHHHHHHHH-HHHHHhccCCCceeeeeeecCCcccCCcc-ccccchHHHHHHHHhhhhhc
Confidence 11 1122222 122223334466777888899984 1111 133344 7888887665543
No 99
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=25.19 E-value=1.5e+02 Score=26.39 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCEEEec--c--------CC---hHHHHHHHhcCCeEE
Q 015263 41 ENVIPLVKSIGATRVKLY--D--------AD---PKVLKAFANTGVEFT 76 (410)
Q Consensus 41 ~~v~~llks~~i~~VRlY--~--------~d---~~vL~A~~~tgi~V~ 76 (410)
+++.+.++.+|++.|+++ + .. ..+|++++..|++|.
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~ 108 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIG 108 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEE
Confidence 566778888999988887 3 33 579999999999973
No 100
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=25.16 E-value=1.2e+02 Score=25.87 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCEEEec--cCC---hHHHHHHHhcCCeEEE
Q 015263 41 ENVIPLVKSIGATRVKLY--DAD---PKVLKAFANTGVEFTV 77 (410)
Q Consensus 41 ~~v~~llks~~i~~VRlY--~~d---~~vL~A~~~tgi~V~l 77 (410)
+.+.+.++.+|++.|+++ +.. ..++++++.+|++|.-
T Consensus 50 ~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 50 EKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 445667778899988888 333 5799999999998743
No 101
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.00 E-value=6e+02 Score=24.13 Aligned_cols=88 Identities=18% Similarity=0.322 Sum_probs=53.7
Q ss_pred CHHHHHHHHhhcCCCEEEeccCC---hHHHHHHHh--cCCeEEEEeccccccccCCHHHHHHHHHHHhhhhCCCCcEEEE
Q 015263 39 TPENVIPLVKSIGATRVKLYDAD---PKVLKAFAN--TGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATKITCI 113 (410)
Q Consensus 39 s~~~v~~llks~~i~~VRlY~~d---~~vL~A~~~--tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~~~I~~I 113 (410)
+++|+.+.++ .|.+.|++|-++ +.-++++++ .+++++.- ..+ +.+.+..|++. .+.+|
T Consensus 118 T~~E~~~A~~-~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~at---GGI----~~~N~~~~l~a---------Ga~~v 180 (213)
T PRK06552 118 TVTEIVTALE-AGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVT---GGV----NLDNVKDWFAA---------GADAV 180 (213)
T ss_pred CHHHHHHHHH-cCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEE---CCC----CHHHHHHHHHC---------CCcEE
Confidence 6788877765 689999999666 567777764 24665421 111 34445556542 45688
Q ss_pred EecccccccCCCCchhhHHHHHHHHHHHHH
Q 015263 114 TVGNEVLTFNDTSLSGCLLPAMESVHTALV 143 (410)
Q Consensus 114 ~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~ 143 (410)
.||...+.......++.+-...++++++++
T Consensus 181 avgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 181 GIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred EEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 999877543111114566666666666554
No 102
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=24.53 E-value=66 Score=33.99 Aligned_cols=21 Identities=19% Similarity=0.142 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCC
Q 015263 128 SGCLLPAMESVHTALVNLGLD 148 (410)
Q Consensus 128 ~~~Ll~am~~vr~aL~~~Gl~ 148 (410)
....+.-++.....|.++|+.
T Consensus 262 ~~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 262 AEERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 456677788889999999995
No 103
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=22.95 E-value=3.1e+02 Score=27.28 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCc
Q 015263 134 AMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYF 203 (410)
Q Consensus 134 am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf 203 (410)
+.++++.+.++.|.. .+++..... .+.|+ .+.+.++..+..+.|.|+.+|.=+..
T Consensus 114 a~~E~er~v~~~gf~-g~~l~p~~~------~~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~ 168 (293)
T COG2159 114 AAEELERRVRELGFV-GVKLHPVAQ------GFYPD--------DPRLYPIYEAAEELGVPVVIHTGAGP 168 (293)
T ss_pred HHHHHHHHHHhcCce-EEEeccccc------CCCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 566777777777764 355543321 11221 13467888899999999999654433
No 104
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=22.95 E-value=7e+02 Score=24.16 Aligned_cols=100 Identities=19% Similarity=0.139 Sum_probs=59.2
Q ss_pred CHHHHHHHHhhcCCCEEEec-cCC---hHHHHHHHhcCCeEEEEeccccccccCCHHHHHHHHHHHhhhhCCC-CcEEEE
Q 015263 39 TPENVIPLVKSIGATRVKLY-DAD---PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPA-TKITCI 113 (410)
Q Consensus 39 s~~~v~~llks~~i~~VRlY-~~d---~~vL~A~~~tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~-~~I~~I 113 (410)
.|++-++.+...|.+.|-+- .+. ..+|+.+++.|+.|-.|+-..--.. .+ .+.++++. +.|.-.
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp---~~--------~i~~~l~~vD~VLiM 147 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETP---IS--------LLEPYLDQIDLIQIL 147 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCC---HH--------HHHHHHhhcCEEEEE
Confidence 46777777777787766553 322 3677888889985555665422111 11 12233322 345555
Q ss_pred EecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeE
Q 015263 114 TVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVS 152 (410)
Q Consensus 114 ~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~ 152 (410)
+| |.=++++ .+-+..+..|+++|+.+.+.|+.-.|.
T Consensus 148 tV--~PGfgGQ-~f~~~~l~KI~~lr~~~~~~~~~~~Ie 183 (228)
T PRK08091 148 TL--DPRTGTK-APSDLILDRVIQVENRLGNRRVEKLIS 183 (228)
T ss_pred EE--CCCCCCc-cccHHHHHHHHHHHHHHHhcCCCceEE
Confidence 55 3323333 346788999999999999888753343
No 105
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=22.57 E-value=3.7e+02 Score=25.60 Aligned_cols=82 Identities=10% Similarity=0.177 Sum_probs=45.8
Q ss_pred hHHHHHHHhcCCeEEEEecccccc-cc---CCHHHHHHHHHHHhhhhCCCCcEEEEEecccccccCC----CCchhhHHH
Q 015263 62 PKVLKAFANTGVEFTVSLGNEYLA-KM---RDPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFND----TSLSGCLLP 133 (410)
Q Consensus 62 ~~vL~A~~~tgi~V~lGv~n~~l~-~~---a~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~~----~s~~~~Ll~ 133 (410)
.+-++.++..|+||++.+-..... .+ .+++.++.+++ +|...+..-.+.+|-+-=|.-.... ......++.
T Consensus 54 ~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~-~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~ 132 (255)
T cd06542 54 ETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAK-AIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVR 132 (255)
T ss_pred HHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHH-HHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHH
Confidence 345566778999999888654322 11 24444444433 3333322224666666555432210 111467888
Q ss_pred HHHHHHHHHHh
Q 015263 134 AMESVHTALVN 144 (410)
Q Consensus 134 am~~vr~aL~~ 144 (410)
.|+.+|+++..
T Consensus 133 lv~~Lr~~~~~ 143 (255)
T cd06542 133 LIKELRKYMGP 143 (255)
T ss_pred HHHHHHHHhCc
Confidence 99999988854
No 106
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=22.43 E-value=2e+02 Score=28.66 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=43.2
Q ss_pred HHHH--hcCCeEEEEecccc----ccccC-CHHHHHHHHHHHhhhhCCCCcEEEEEecccccccC-------CCCchhhH
Q 015263 66 KAFA--NTGVEFTVSLGNEY----LAKMR-DPDCAKAWIKSNVQAYLPATKITCITVGNEVLTFN-------DTSLSGCL 131 (410)
Q Consensus 66 ~A~~--~tgi~V~lGv~n~~----l~~~a-~~~~A~~wv~~~V~~~~p~~~I~~I~VGNEvl~~~-------~~s~~~~L 131 (410)
..++ +.++||++.|..-. ...+. ++...+.. .+++..++....+.+|-+==|..... ..+-...+
T Consensus 76 ~~lk~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~F-i~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~ 154 (322)
T cd06548 76 RKLKQKNPHLKILLSIGGWTWSGGFSDAAATEASRAKF-ADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENF 154 (322)
T ss_pred HHHHHhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHH-HHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHH
Confidence 3444 35688887775321 22232 44333333 33444444344566776643422110 01225678
Q ss_pred HHHHHHHHHHHHhCC
Q 015263 132 LPAMESVHTALVNLG 146 (410)
Q Consensus 132 l~am~~vr~aL~~~G 146 (410)
+..|+.+|++|.+.|
T Consensus 155 ~~ll~~Lr~~l~~~~ 169 (322)
T cd06548 155 TLLLKELREALDALG 169 (322)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998865
No 107
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=21.98 E-value=1.7e+02 Score=27.81 Aligned_cols=39 Identities=13% Similarity=0.373 Sum_probs=34.7
Q ss_pred HHHHhhcCCCEEEeccCChHHHHHHHhcCCeEEEEeccc
Q 015263 44 IPLVKSIGATRVKLYDADPKVLKAFANTGVEFTVSLGNE 82 (410)
Q Consensus 44 ~~llks~~i~~VRlY~~d~~vL~A~~~tgi~V~lGv~n~ 82 (410)
.++|+.+||++||+-..+|.=..++.+.||+|.=-+++.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~~ 171 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPLI 171 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeecC
Confidence 579999999999999999988889999999998877764
No 108
>PRK05309 30S ribosomal protein S11; Validated
Probab=21.91 E-value=2.1e+02 Score=25.28 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCCEEEecc--CC---hHHHHHHHhcCCeEE
Q 015263 41 ENVIPLVKSIGATRVKLYD--AD---PKVLKAFANTGVEFT 76 (410)
Q Consensus 41 ~~v~~llks~~i~~VRlY~--~d---~~vL~A~~~tgi~V~ 76 (410)
+.+.+.++.+|++.|+++= .. ..+|+++...|++|.
T Consensus 67 ~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~ 107 (128)
T PRK05309 67 EDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVT 107 (128)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 4556677788999999983 32 579999999999864
No 109
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=21.81 E-value=9.2e+02 Score=25.10 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCCCeEEeeeeecccccccCCCCCccccccchhhhhhhhhhhhhcCCceeeecCCCcccCC
Q 015263 128 SGCLLPAMESVHTALVNLGLDKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKG 207 (410)
Q Consensus 128 ~~~Ll~am~~vr~aL~~~Gl~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~ 207 (410)
.++.+.+++.+|++. . .+.|++..-. .|| .|-.+.+...++|+.+.+ +-.+++++|--+-.
T Consensus 269 ~~~~~~~i~~l~~~~----~--~i~i~~~~I~-----G~P-------gET~e~~~~t~~fl~~~~-~~~~~~~~~sp~pG 329 (430)
T TIGR01125 269 GEQQLDFIERLREKC----P--DAVLRTTFIV-----GFP-------GETEEDFQELLDFVEEGQ-FDRLGAFTYSPEEG 329 (430)
T ss_pred HHHHHHHHHHHHHhC----C--CCeEeEEEEE-----ECC-------CCCHHHHHHHHHHHHhcC-CCEEeeeeccCCCC
Confidence 566777777777652 1 3455554321 244 122345677889988765 34678888766544
Q ss_pred C
Q 015263 208 S 208 (410)
Q Consensus 208 ~ 208 (410)
.
T Consensus 330 T 330 (430)
T TIGR01125 330 T 330 (430)
T ss_pred C
Confidence 3
No 110
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.53 E-value=7.2e+02 Score=23.85 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=48.0
Q ss_pred CCHHHHHHHHhhcCCCEEEeccCC--------hHHHHHHHh-cCCeEEEEeccccccccCCHHHHHHHHHHHhhhhCCCC
Q 015263 38 PTPENVIPLVKSIGATRVKLYDAD--------PKVLKAFAN-TGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPAT 108 (410)
Q Consensus 38 ps~~~v~~llks~~i~~VRlY~~d--------~~vL~A~~~-tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~~ 108 (410)
.+|-+.++.++..|++.+=+.|.| ..+++.+.+ .-++|.+|=... +.+.++.++..
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIr------s~e~~~~~l~~--------- 94 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIR------DIEKAKRLLSL--------- 94 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcC------CHHHHHHHHHC---------
Confidence 378899999988999999999877 256766665 445888875543 33444444432
Q ss_pred cEEEEEeccccccc
Q 015263 109 KITCITVGNEVLTF 122 (410)
Q Consensus 109 ~I~~I~VGNEvl~~ 122 (410)
.+..|+||.|.+.+
T Consensus 95 Ga~kvvigt~a~~~ 108 (232)
T PRK13586 95 DVNALVFSTIVFTN 108 (232)
T ss_pred CCCEEEECchhhCC
Confidence 34457899998753
No 111
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=21.48 E-value=5.8e+02 Score=29.50 Aligned_cols=82 Identities=13% Similarity=0.024 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCCEEEecc--CChHHHHHHHhcCCeEEEEeccccc--cc-cCCHHHHHHHHHHHhhhhCCCCcEEEEE
Q 015263 40 PENVIPLVKSIGATRVKLYD--ADPKVLKAFANTGVEFTVSLGNEYL--AK-MRDPDCAKAWIKSNVQAYLPATKITCIT 114 (410)
Q Consensus 40 ~~~v~~llks~~i~~VRlY~--~d~~vL~A~~~tgi~V~lGv~n~~l--~~-~a~~~~A~~wv~~~V~~~~p~~~I~~I~ 114 (410)
..+++++||..|++.||+.. -++.-++-|...||=|+-=...... +. -.-++.+..-++..|...--.-.|.-=+
T Consensus 323 ~~~dl~lmk~~n~N~vRtsHyP~~~~~ydLcDelGllV~~Ea~~~~~~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs 402 (808)
T COG3250 323 MERDLKLMKEANMNSVRTSHYPNSEEFYDLCDELGLLVIDEAMIETHGMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWS 402 (808)
T ss_pred HHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhCcEEEEecchhhcCCCCCcchhHHHHHHHHHHHHhccCCCcEEEEe
Confidence 56778899999999999983 3377888889999988655443221 10 0012344445566665532122577789
Q ss_pred ecccccc
Q 015263 115 VGNEVLT 121 (410)
Q Consensus 115 VGNEvl~ 121 (410)
+|||.-.
T Consensus 403 ~gNE~~~ 409 (808)
T COG3250 403 LGNESGH 409 (808)
T ss_pred ccccccC
Confidence 9999754
No 112
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.29 E-value=5.6e+02 Score=23.74 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=57.5
Q ss_pred HHHHHHHHhhcCCCEEEeccCC---------hHHHHHHHhcCCeEEEE--eccccccccC-CHHHHHHHHHHHhhhhCCC
Q 015263 40 PENVIPLVKSIGATRVKLYDAD---------PKVLKAFANTGVEFTVS--LGNEYLAKMR-DPDCAKAWIKSNVQAYLPA 107 (410)
Q Consensus 40 ~~~v~~llks~~i~~VRlY~~d---------~~vL~A~~~tgi~V~lG--v~n~~l~~~a-~~~~A~~wv~~~V~~~~p~ 107 (410)
-...++.|...|.++|=+.+.. ....++++..|+++..- .+.....+.. ..+.+.+|++++ +
T Consensus 97 g~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~- 170 (265)
T cd01543 97 GRMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDAQSWEEEQEELAQWLQSL-----P- 170 (265)
T ss_pred HHHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCccccccccHHHHHHHHHHHHhcC-----C-
Confidence 3455566666777777665433 12334566678776211 1111011111 112233343321 1
Q ss_pred CcEEEEEecccccccCCCCchhhHHHHHHHHHHHHHhCCC--CCCeEEeeeeecccccccCCCCCccccccchhhhhhhh
Q 015263 108 TKITCITVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGL--DKQVSVTTAHSLGVLGSSYPPSAGAFRKDLVDCITPIL 185 (410)
Q Consensus 108 ~~I~~I~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl--~~~I~VsTa~~~~vl~~s~PPS~g~F~~dl~~~l~~~l 185 (410)
.+++|+..|+.+. +. +.++|++.|+ .++|.|.+-+....+..-..|.-.....+....-..++
T Consensus 171 -~~~ai~~~~d~~a----------~g----~~~~l~~~g~~vp~di~vigfd~~~~~~~~~~~~ltti~~~~~~~g~~a~ 235 (265)
T cd01543 171 -KPVGIFACTDARA----------RQ----LLEACRRAGIAVPEEVAVLGVDNDELICELSRPPLSSVEQNAERIGYEAA 235 (265)
T ss_pred -CCcEEEecChHHH----------HH----HHHHHHHhCCCCCCceEEEeeCCchhhhccCCCCCceeecCHHHHHHHHH
Confidence 3567777665432 11 2345555665 45677777665433222223334444444333333344
Q ss_pred hh
Q 015263 186 DF 187 (410)
Q Consensus 186 df 187 (410)
+.
T Consensus 236 ~~ 237 (265)
T cd01543 236 KL 237 (265)
T ss_pred HH
Confidence 44
No 113
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=21.20 E-value=2.1e+02 Score=27.31 Aligned_cols=70 Identities=21% Similarity=0.323 Sum_probs=48.4
Q ss_pred CCHHHHHHHHhhcCCCEEEeccCC---------hHHHHHH-HhcCCeEEEEeccccccccCCHHHHHHHHHHHhhhhCCC
Q 015263 38 PTPENVIPLVKSIGATRVKLYDAD---------PKVLKAF-ANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPA 107 (410)
Q Consensus 38 ps~~~v~~llks~~i~~VRlY~~d---------~~vL~A~-~~tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~ 107 (410)
.+|.++++.+...+++.+-+-|.| ..+++.+ +..+++|.+|-... +.+.++.|+..
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIr------s~ed~~~ll~~-------- 94 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIR------SIEDAERLLDA-------- 94 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE-------SHHHHHHHHHT--------
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccC------cHHHHHHHHHh--------
Confidence 578899999988999999888866 1355444 45799999997753 34555555542
Q ss_pred CcEEEEEeccccccc
Q 015263 108 TKITCITVGNEVLTF 122 (410)
Q Consensus 108 ~~I~~I~VGNEvl~~ 122 (410)
.+..|++|.|.+.+
T Consensus 95 -Ga~~Vvigt~~~~~ 108 (229)
T PF00977_consen 95 -GADRVVIGTEALED 108 (229)
T ss_dssp -T-SEEEESHHHHHC
T ss_pred -CCCEEEeChHHhhc
Confidence 24479999998864
No 114
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=21.08 E-value=7.8e+02 Score=23.98 Aligned_cols=80 Identities=16% Similarity=0.351 Sum_probs=42.3
Q ss_pred HHHHHHHh--cCCeEEEEecccccc--cc-CCHHHHHHHHHH---HhhhhCCCCcEEEEEecccccccCCCCchhhHHHH
Q 015263 63 KVLKAFAN--TGVEFTVSLGNEYLA--KM-RDPDCAKAWIKS---NVQAYLPATKITCITVGNEVLTFNDTSLSGCLLPA 134 (410)
Q Consensus 63 ~vL~A~~~--tgi~V~lGv~n~~l~--~~-a~~~~A~~wv~~---~V~~~~p~~~I~~I~VGNEvl~~~~~s~~~~Ll~a 134 (410)
.-+.++++ .++||++.|.-.... .. .++.....|+++ .+..++..-.+.+|=+==|.... . .......
T Consensus 59 ~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~~---d-~~~f~~l 134 (253)
T cd06544 59 EAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFPA---D-PDTFVEC 134 (253)
T ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCCCccccCchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCCc---C-HHHHHHH
Confidence 44556654 579999998653321 12 133333334322 22222222245555544443211 1 4567888
Q ss_pred HHHHHHHHHhCC
Q 015263 135 MESVHTALVNLG 146 (410)
Q Consensus 135 m~~vr~aL~~~G 146 (410)
|+++|.+|++.+
T Consensus 135 l~~l~~~l~~~~ 146 (253)
T cd06544 135 IGQLITELKNNG 146 (253)
T ss_pred HHHHHHHhhhcC
Confidence 999999998876
No 115
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=21.03 E-value=4.3e+02 Score=25.22 Aligned_cols=69 Identities=23% Similarity=0.332 Sum_probs=47.6
Q ss_pred CHHHHHHHHhhcCCCEEEeccCC--------hHHHHHHH-hcCCeEEEEeccccccccCCHHHHHHHHHHHhhhhCCCCc
Q 015263 39 TPENVIPLVKSIGATRVKLYDAD--------PKVLKAFA-NTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPATK 109 (410)
Q Consensus 39 s~~~v~~llks~~i~~VRlY~~d--------~~vL~A~~-~tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~~~ 109 (410)
+|.+.++.++..|++.+=+.|.| ..+++.+. ..+++|++|-.... .+.++.++.. -
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~------~edv~~~l~~---------G 100 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRS------LENAQEWLKR---------G 100 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCC------HHHHHHHHHc---------C
Confidence 68889999999999999999877 23565554 56899999976533 2333333321 2
Q ss_pred EEEEEeccccccc
Q 015263 110 ITCITVGNEVLTF 122 (410)
Q Consensus 110 I~~I~VGNEvl~~ 122 (410)
...|++|.|.+.+
T Consensus 101 a~~viigt~~~~~ 113 (233)
T cd04723 101 ASRVIVGTETLPS 113 (233)
T ss_pred CCeEEEcceeccc
Confidence 3457899998764
No 116
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.00 E-value=4.3e+02 Score=25.58 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=48.6
Q ss_pred CCHHHHHHHHhhcCCCEEEeccCC---------hHHHHHHHhcCCeEEEEeccccccccCCHHHHHHHHHHHhhhhCCCC
Q 015263 38 PTPENVIPLVKSIGATRVKLYDAD---------PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPAT 108 (410)
Q Consensus 38 ps~~~v~~llks~~i~~VRlY~~d---------~~vL~A~~~tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~~ 108 (410)
.+|-++++.++..|++.+=+.|.| .++++.+++.=+.|.+|=... +.+.++.|+..
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGIr------s~e~~~~~l~~--------- 94 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGIR------SLDYAEKLRKL--------- 94 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCCC------CHHHHHHHHHC---------
Confidence 578899999999999999999887 246777665336777775543 34455555542
Q ss_pred cEEEEEeccccccc
Q 015263 109 KITCITVGNEVLTF 122 (410)
Q Consensus 109 ~I~~I~VGNEvl~~ 122 (410)
.+..|+||.+.+.+
T Consensus 95 Ga~rvvigT~a~~~ 108 (241)
T PRK14114 95 GYRRQIVSSKVLED 108 (241)
T ss_pred CCCEEEECchhhCC
Confidence 23457899998753
No 117
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=20.96 E-value=7e+02 Score=23.44 Aligned_cols=99 Identities=19% Similarity=0.312 Sum_probs=60.8
Q ss_pred CHHHHHHHHhhcCCCEEEec-cC-C--hHHHHHHHhcCCeEEEEeccccccccCCHHHHHHHHHHHhhhhCCC-CcEEEE
Q 015263 39 TPENVIPLVKSIGATRVKLY-DA-D--PKVLKAFANTGVEFTVSLGNEYLAKMRDPDCAKAWIKSNVQAYLPA-TKITCI 113 (410)
Q Consensus 39 s~~~v~~llks~~i~~VRlY-~~-d--~~vL~A~~~tgi~V~lGv~n~~l~~~a~~~~A~~wv~~~V~~~~p~-~~I~~I 113 (410)
.|++.++.++..|.+.|=+- .+ + ..+++.+++.|+++-|.++... .+ +.+.++++. +.|...
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~-----------~~~~~~l~~vD~VlvM 134 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV-----------EELEPYLDQVDMVLVM 134 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G-----------GGGTTTGCCSSEEEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc-----------hHHHHHhhhcCEEEEE
Confidence 57788888877787766443 22 2 4688999999999977776532 11 234455543 344444
Q ss_pred EecccccccCCCCchhhHHHHHHHHHHHHHhCCCCCCeEE
Q 015263 114 TVGNEVLTFNDTSLSGCLLPAMESVHTALVNLGLDKQVSV 153 (410)
Q Consensus 114 ~VGNEvl~~~~~s~~~~Ll~am~~vr~aL~~~Gl~~~I~V 153 (410)
+| |.=+.++ .+-+..+..|+.+|+.+.+.|++-.|.|
T Consensus 135 sV--~PG~~Gq-~f~~~~~~KI~~l~~~~~~~~~~~~I~v 171 (201)
T PF00834_consen 135 SV--EPGFGGQ-KFIPEVLEKIRELRKLIPENGLDFEIEV 171 (201)
T ss_dssp SS---TTTSSB---HGGHHHHHHHHHHHHHHHTCGSEEEE
T ss_pred Ee--cCCCCcc-cccHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 43 3322332 3578899999999999999887644443
No 118
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.28 E-value=1.8e+02 Score=28.32 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=40.9
Q ss_pred hhccccCceeEEecCCCCCCC----CHHHHHHHHhhcCCCEEEeccCC--------hHHHHHHHhcCCe
Q 015263 18 SHVKIGTSIGINYGQIANNLP----TPENVIPLVKSIGATRVKLYDAD--------PKVLKAFANTGVE 74 (410)
Q Consensus 18 ~~~~~~~~~GInYg~~~~nlp----s~~~v~~llks~~i~~VRlY~~d--------~~vL~A~~~tgi~ 74 (410)
+.+..-..+=|+-||.-+..+ +.+..+.+||..|.+.||.|... ..|.+|+++.|+.
T Consensus 111 sPTG~~G~VkISTGp~Ss~~~~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~ 179 (236)
T TIGR03581 111 SPTGTPGLVNISTGPLSSQGKEAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFY 179 (236)
T ss_pred cCCCccceEEeccCcccccCCCceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCc
Confidence 333333355566677665543 46778899999999999999765 3577888889875
No 119
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=20.14 E-value=9.5e+02 Score=24.64 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=76.7
Q ss_pred CCC-CCccccccchhhhhhhhhhhhhcCCceeeecCCCcccCCCCCccCcccccccCCC----------CcccCCCchhh
Q 015263 166 YPP-SAGAFRKDLVDCITPILDFHVKTASPFLINAYPYFAYKGSPKQVSLDFVLFQPNQ----------GIVDPASNLHY 234 (410)
Q Consensus 166 ~PP-S~g~F~~dl~~~l~~~ldfL~~t~sp~~vNiyPyf~~~~~p~~i~l~yAlf~~~~----------~v~d~~~~~~y 234 (410)
+|. ..+.+.++..+-++.++|.+.+.|+.+.+.++- .+........ ......|+. ......|...-
T Consensus 69 ~~~~~~~l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H--~G~~~~~~~~-~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI 145 (370)
T cd02929 69 TPRISARLWDDGDIRNLAAMTDAVHKHGALAGIELWH--GGAHAPNRES-RETPLGPSQLPSEFPTGGPVQAREMDKDDI 145 (370)
T ss_pred CcccCcCcCCHHHHHHHHHHHHHHHHCCCeEEEeccc--CCCCCCccCC-CCCccCCCCCCCCccccCCCCCccCCHHHH
Confidence 444 467888888889999999999999998888641 1111100000 000011100 00011122223
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCccEEEeeec-------cCC---CCCCCCCCCCHHHHHHHHHHHHHHHHccCC
Q 015263 235 DNMLFAQIDAVYAALASLGYKKLLLHISETG-------WPS---KGDEDEAGATPENAKKYNGNLIKLISSKKG 298 (410)
Q Consensus 235 ~nl~daqvDav~~Al~~~g~~~~~VvVsETG-------WPS---~G~~~~~~As~~Na~~y~~~li~~~~~~~G 298 (410)
..+.+...+|.+.|. ++|+.+++|+-+- | .|. .-| +-+.|.+|-.+|...+++.+++..|
T Consensus 146 ~~ii~~f~~AA~ra~-~aGfDgVEih~ah-GyLl~QFlSp~~N~RtD--~yGGslenR~Rf~~eii~aIr~~vg 215 (370)
T cd02929 146 KRVRRWYVDAALRAR-DAGFDIVYVYAAH-GYLPLQFLLPRYNKRTD--EYGGSLENRARFWRETLEDTKDAVG 215 (370)
T ss_pred HHHHHHHHHHHHHHH-HcCCCEEEEcccc-cchHHHhhCccccCCcc--ccCCChHhhhHHHHHHHHHHHHHcC
Confidence 456666677777664 4799999998765 2 233 333 3468999999999999999987666
Done!