BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015264
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I1A|A Chain A, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|B Chain B, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|C Chain C, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
pdb|2I1A|D Chain D, A Retroviral Protease-Like Domain In The Eukaryotic
Protein Ddi1
Length = 148
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/150 (47%), Positives = 101/150 (67%), Gaps = 3/150 (2%)
Query: 171 IRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCG 230
++Q+ IDE A+E+ PE F +V MLY+++E+N P+KAFVD+GAQ+TI+S A++ G
Sbjct: 1 MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTG 60
Query: 231 XXXXXXXXYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRK 290
+ G A GVG +I+GRIH A +KI + PCSF VLD+ +++ L GLDML++
Sbjct: 61 LSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQYIPCSFTVLDT-DIDVLIGLDMLKR 119
Query: 291 HQCIIDLKENVLRVGGGEVSVPFLQEKDIP 320
H +DLKENVLR+ EV FL E +IP
Sbjct: 120 HLACVDLKENVLRI--AEVETSFLSEAEIP 147
>pdb|3S8I|A Chain A, The Retroviral-Like Protease (Rvp) Domain Of Human Ddi1
pdb|3S8I|B Chain B, The Retroviral-Like Protease (Rvp) Domain Of Human Ddi1
Length = 148
Score = 142 bits (357), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 88/133 (66%)
Query: 188 PEAFARVVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGXXXXXXXXYRGVAHGVG 247
P +V MLY++ +VNG PLKAFVDSGAQ TI+S++CAERC + GVA GVG
Sbjct: 16 PRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVG 75
Query: 248 QSEILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGG 307
I+GR+H+A I+I F CSF +L+ M+ L GLDMLR+HQC IDLK+NVL +G
Sbjct: 76 TQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTT 135
Query: 308 EVSVPFLQEKDIP 320
FL E ++P
Sbjct: 136 GTQTYFLPEGELP 148
>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin
Length = 76
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 46/70 (65%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPQQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 76
Score = 52.0 bits (123), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ GR++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|H Chain H, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
Length = 76
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ GR++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQRESTLHLV 70
>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCS|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
Length = 76
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 46/70 (65%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
++I V T + I+L+V+P +T+ENVKA ++ + Q+P QQ+L++ G+++ + LS
Sbjct: 1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEQIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide-
Binding Tag
Length = 111
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 96 IQKESTLHLV 105
>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin
pdb|2KJH|B Chain B, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
pdb|4DHJ|D Chain D, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|H Chain H, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|E Chain E, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 76
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect
pdb|3JVZ|Y Chain Y, E2~ubiquitin-Hect
pdb|3JW0|X Chain X, E2~ubiquitin-Hect
pdb|3JW0|Y Chain Y, E2~ubiquitin-Hect
pdb|4AUQ|C Chain C, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|F Chain F, Structure Of Birc7-Ubch5b-Ub Complex
Length = 81
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 6 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 65
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 66 IQKESTLHLV 75
>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
pdb|3K9P|B Chain B, The Crystal Structure Of E2-25k And Ubiquitin Complex
pdb|3OJ3|A Chain A, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|B Chain B, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|C Chain C, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|D Chain D, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|E Chain E, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|F Chain F, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|G Chain G, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|H Chain H, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ4|B Chain B, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|E Chain E, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|C Chain C, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
pdb|3PTF|D Chain D, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 79
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 64 IQKESTLHLV 73
>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy
pdb|2KX0|A Chain A, The Solution Structure Of Ubb+1, Frameshift Mutant Of
Ubiquitin B
Length = 103
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 9 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSEYN 68
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 69 IQKESTLHLV 78
>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein- Ubiquitin Fusion Protein
Length = 307
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 293
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 294 IQKESTLHLV 303
>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|B Chain B, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|C Chain C, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|D Chain D, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|E Chain E, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|F Chain F, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|G Chain G, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|H Chain H, Structure Of K11-Linked Di-Ubiquitin
Length = 78
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 63 IQKESTLHLV 72
>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|F Chain F, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 80
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 5 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 64
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 65 IQKESTLHLV 74
>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
pdb|3DVN|X Chain X, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|U Chain U, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 80
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 64 IQKESTLHLV 73
>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
pdb|1AAR|B Chain B, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
pdb|1TBE|A Chain A, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
pdb|1TBE|B Chain B, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
pdb|1F9J|A Chain A, Structure Of A New Crystal Form Of Tetraubiquitin
pdb|1F9J|B Chain B, Structure Of A New Crystal Form Of Tetraubiquitin
pdb|1P3Q|U Chain U, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
pdb|1P3Q|V Chain V, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
pdb|1UZX|B Chain B, A Complex Of The Vps23 Uev With Ubiquitin
pdb|1YD8|U Chain U, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1YD8|V Chain V, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1WR6|E Chain E, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|F Chain F, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|G Chain G, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|H Chain H, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WRD|B Chain B, Crystal Structure Of Tom1 Gat Domain In Complex With
Ubiquitin
pdb|2D3G|A Chain A, Double Sided Ubiquitin Binding Of Hrs-Uim
pdb|2D3G|B Chain B, Double Sided Ubiquitin Binding Of Hrs-Uim
pdb|2C7M|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|D Chain D, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|F Chain F, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|H Chain H, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|J Chain J, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|L Chain L, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2FID|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|C Chain C, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|E Chain E, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2G45|B Chain B, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In
Complex With Ubiquitin
pdb|2G45|E Chain E, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In
Complex With Ubiquitin
pdb|2HD5|B Chain B, Usp2 In Complex With Ubiquitin
pdb|2GMI|C Chain C, Mms2UBC13~UBIQUITIN
pdb|2DX5|B Chain B, The Complex Structure Between The Mouse Eap45-Glue
Domain And Ubiquitin
pdb|2HTH|A Chain A, Structural Basis For Ubiquitin Recognition By The Human
Eap45ESCRT-Ii Glue Domain
pdb|2OOB|B Chain B, Crystal Structure Of The Uba Domain From Cbl-B Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2O6V|A Chain A, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|C Chain C, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|E Chain E, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|G Chain G, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2PE9|A Chain A, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|2PE9|B Chain B, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|2PEA|A Chain A, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|2PEA|B Chain B, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|1UBI|A Chain A, Synthetic Structural And Biological Studies Of The
Ubiquitin System. Part 1
pdb|1UBQ|A Chain A, Structure Of Ubiquitin Refined At 1.8 Angstroms
Resolution
pdb|2QHO|A Chain A, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|C Chain C, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|E Chain E, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|G Chain G, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|1D3Z|A Chain A, Ubiquitin Nmr Structure
pdb|1FXT|B Chain B, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1Q5W|B Chain B, Ubiquitin Recognition By Npl4 Zinc-Fingers
pdb|1V80|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
pdb|1V81|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
pdb|1XQQ|A Chain A, Simultaneous Determination Of Protein Structure And
Dynamics
pdb|2BGF|A Chain A, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using
Chemical Shift Perturbation Data Together With Rdcs And
15n- Relaxation Data
pdb|2BGF|B Chain B, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using
Chemical Shift Perturbation Data Together With Rdcs And
15n- Relaxation Data
pdb|2DEN|B Chain B, Solution Structure Of The Ubiquitin-Associated Domain Of
Human Bmsc-Ubp And Its Complex With Ubiquitin
pdb|2FUH|B Chain B, Solution Structure Of The Ubch5cUB NON-Covalent Complex
pdb|2NR2|A Chain A, The Mumo (Minimal Under-Restraining Minimal Over-
Restraining) Method For The Determination Of Native
States Ensembles Of Proteins
pdb|2ZCC|A Chain A, Ubiquitin Crystallized Under High Pressure
pdb|2ZCC|B Chain B, Ubiquitin Crystallized Under High Pressure
pdb|2ZCC|C Chain C, Ubiquitin Crystallized Under High Pressure
pdb|2JF5|A Chain A, Crystal Structure Of Lys63-Linked Di-Ubiquitin
pdb|2JF5|B Chain B, Crystal Structure Of Lys63-Linked Di-Ubiquitin
pdb|2JY6|A Chain A, Solution Structure Of The Complex Of Ubiquitin And
Ubiquilin 1 Uba Domain
pdb|2JZZ|A Chain A, Solid-State Nmr Structure Of Microcrystalline Ubiquitin
pdb|2Z59|B Chain B, Complex Structures Of Mouse Rpn13 (22-130aa) And
Ubiquitin
pdb|2K39|A Chain A, Recognition Dynamics Up To Microseconds Revealed From
Rdc Derived Ubiquitin Ensemble In Solution
pdb|2JRI|B Chain B, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|2JRI|C Chain C, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|3EFU|A Chain A, X-Ray Structure Of Human Ubiquitin-Hg(Ii) Adduct
pdb|3EEC|A Chain A, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
pdb|3EEC|B Chain B, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
pdb|3EHV|A Chain A, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|3EHV|B Chain B, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|3EHV|C Chain C, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|2K8B|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding
Domain (Pfuc) Cis Isomer In Complex With Ubiquitin
pdb|2K8C|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding
Domain (Pfuc) Trans Isomer In Complex With Ubiquitin
pdb|3H1U|A Chain A, Structure Of Ubiquitin In Complex With Cd Ions
pdb|3H1U|B Chain B, Structure Of Ubiquitin In Complex With Cd Ions
pdb|3HM3|A Chain A, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|B Chain B, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|C Chain C, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|D Chain D, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|2KDE|B Chain B, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDE|C Chain C, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDF|B Chain B, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDF|C Chain C, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
pdb|3H7P|B Chain B, Crystal Structure Of K63-Linked Di-Ubiquitin
pdb|2KLG|A Chain A, Pere Nmr Structure Of Ubiquitin
pdb|2KN5|A Chain A, A Correspondence Between Solution-State Dynamics Of An
Individual Protein And The Sequence And Conformational
Diversity Of Its Family
pdb|2WWZ|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P212121
pdb|2WWZ|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P212121
pdb|2WX0|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX0|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX0|E Chain E, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX0|F Chain F, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX1|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
pdb|2WX1|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
pdb|3A33|B Chain B, Ubch5b~ubiquitin Conjugate
pdb|3M3J|A Chain A, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|B Chain B, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|C Chain C, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|D Chain D, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|E Chain E, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|F Chain F, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3NHE|B Chain B, High Resolution Structure (1.26a) Of Usp2a In Complex
With Ubiquitin
pdb|2XEW|A Chain A, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|B Chain B, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|C Chain C, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|D Chain D, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|E Chain E, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|F Chain F, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|G Chain G, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|H Chain H, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|I Chain I, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|J Chain J, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|K Chain K, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|L Chain L, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XK5|A Chain A, Crystal Structure Of K6-Linked Diubiquitin
pdb|3ALB|A Chain A, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|B Chain B, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|C Chain C, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|D Chain D, Cyclic Lys48-Linked Tetraubiquitin
pdb|3OFI|C Chain C, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|D Chain D, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|2KWU|B Chain B, Solution Structure Of Ubm2 Of Murine Polymerase Iota In
Complex With Ubiquitin
pdb|2KWV|B Chain B, Solution Structure Of Ubm1 Of Murine Polymerase Iota In
Complex With Ubiquitin
pdb|2KTF|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2 In
Complex With Ubiquitin
pdb|2L0F|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2
(P692a Mutant) In Complex With Ubiquitin
pdb|2L0T|A Chain A, Solution Structure Of The Complex Of Ubiquitin And The
Vhs Domain Of Stam2
pdb|3N30|A Chain A, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
pdb|3N30|B Chain B, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
pdb|3N32|A Chain A, The Crystal Structure Of Human Ubiquitin Adduct With
Zeise's Salt
pdb|2L3Z|A Chain A, Proton-Detected 4d Dream Solid-State Nmr Structure Of
Ubiquitin
pdb|3PHD|E Chain E, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|F Chain F, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|G Chain G, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|H Chain H, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|2XBB|C Chain C, Nedd4 Hect:ub Complex
pdb|2XBB|D Chain D, Nedd4 Hect:ub Complex
pdb|2KOX|A Chain A, Nmr Residual Dipolar Couplings Identify Long Range
Correlated Motions In The Backbone Of The Protein
Ubiquitin
pdb|2RR9|A Chain A, The Solution Structure Of The K63-Ub2:tuims Complex
pdb|2RR9|B Chain B, The Solution Structure Of The K63-Ub2:tuims Complex
pdb|3NS8|A Chain A, Crystal Structure Of An Open Conformation Of
Lys48-Linked Diubiquitin At Ph 7.5
pdb|3NS8|B Chain B, Crystal Structure Of An Open Conformation Of
Lys48-Linked Diubiquitin At Ph 7.5
pdb|3AUL|A Chain A, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin
In An Open Conformation
pdb|3AUL|B Chain B, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin
In An Open Conformation
pdb|4DDG|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|O Chain O, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|P Chain P, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|3UGB|B Chain B, Ubch5c~ubiquitin Conjugate
pdb|3TBL|D Chain D, Structure Of Mono-Ubiquitinated Pcna: Implications For
Dna Polymerase Switching And Okazaki Fragment
Maturation
pdb|3TBL|E Chain E, Structure Of Mono-Ubiquitinated Pcna: Implications For
Dna Polymerase Switching And Okazaki Fragment
Maturation
pdb|4DDG|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|M Chain M, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|N Chain N, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|Q Chain Q, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|R Chain R, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|2LJ5|A Chain A, Description Of The Structural Fluctuations Of Proteins
From Structure- Based Calculations Of Residual Dipolar
Couplings
pdb|3VHT|C Chain C, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion
Protein In Complex With Ubiquitin
pdb|2LVO|A Chain A, Structure Of The Gp78cue Domain Bound To Monubiquitin
pdb|2LVP|A Chain A, Gp78cue Domain Bound To The Distal Ubiquitin Of
K48-Linked Diubiquitin
pdb|2LVP|B Chain B, Gp78cue Domain Bound To The Distal Ubiquitin Of
K48-Linked Diubiquitin
pdb|2LVQ|A Chain A, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
pdb|2LVQ|B Chain B, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
pdb|3VUW|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUW|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUW|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUX|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUX|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUX|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUY|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
pdb|3VUY|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
pdb|3VUY|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
Length = 76
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using
Backbone Amide Noes And Backbone N-H And N-C Rdcs
Length = 77
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 62 IQKESTLHLV 71
>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
pdb|3DVN|Y Chain Y, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|V Chain V, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 79
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 64 IQRESTLHLV 73
>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3RUL|B Chain B, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3RUL|C Chain C, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3RUL|D Chain D, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3VFK|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex
With Its Ligand, Using Ubiquitin As A Ligand Carrier
Length = 79
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex
pdb|1XD3|D Chain D, Crystal Structure Of Uchl3-Ubvme Complex
pdb|2IBI|B Chain B, Covalent Ubiquitin-Usp2 Complex
pdb|2J7Q|B Chain B, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
pdb|2J7Q|D Chain D, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
pdb|3C0R|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3C0R|D Chain D, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3BY4|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3I3T|B Chain B, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|D Chain D, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|F Chain F, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|H Chain H, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3IHP|C Chain C, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|D Chain D, Covalent Ubiquitin-Usp5 Complex
pdb|3IFW|B Chain B, Crystal Structure Of The S18y Variant Of Ubiquitin
Carboxy T Hydrolase L1 Bound To Ubiquitin
Vinylmethylester.
pdb|3KVF|B Chain B, Crystal Structure Of The I93m Mutant Of Ubiquitin
Carboxy Te Hydrolase L1 Bound To Ubiquitin
Vinylmethylester
pdb|3KW5|B Chain B, Crystal Structure Of Ubiquitin Carboxy Terminal
Hydrolase L1 Ubiquitin Vinylmethylester
pdb|3PT2|B Chain B, Structure Of A Viral Otu Domain Protease Bound To
Ubiquitin
pdb|3PRM|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRM|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PHW|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|D Chain D, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|F Chain F, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|H Chain H, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|4HXD|A Chain A, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
pdb|4HXD|C Chain C, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
Length = 75
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1CMX|D Chain D, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1NBF|C Chain C, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
pdb|1NBF|D Chain D, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
pdb|2AYO|B Chain B, Structure Of Usp14 Bound To Ubquitin Aldehyde
pdb|2WDT|B Chain B, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|2WDT|D Chain D, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|3MHS|D Chain D, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
BOUND Ubiquitin Aldehyde
pdb|3O65|B Chain B, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|D Chain D, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|F Chain F, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|H Chain H, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3TMP|B Chain B, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|D Chain D, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|F Chain F, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|H Chain H, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|4DHJ|B Chain B, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|F Chain F, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|J Chain J, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|M Chain M, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|B Chain B, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
pdb|4IUM|B Chain B, Equine Arteritis Virus Papain-like Protease 2 (plp2)
Covalently Bound To Ubiquitin
pdb|3ZNH|B Chain B, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 76
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2.
pdb|4ADX|5 Chain 5, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 129
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+LDV+ +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|F Chain F, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|3A1Q|A Chain A, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3A1Q|D Chain D, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3JSV|B Chain B, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
pdb|3A9J|B Chain B, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A9K|B Chain B, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 77
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
pdb|3VDZ|B Chain B, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
Length = 111
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 95
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 96 IQKESTLHLV 105
>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 96
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 62 IQKESTLHLV 71
>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|E Chain E, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|3A1Q|B Chain B, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3A1Q|E Chain E, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3H7P|A Chain A, Crystal Structure Of K63-Linked Di-Ubiquitin
pdb|3JSV|A Chain A, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
pdb|3A9J|A Chain A, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A9K|A Chain A, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 76
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQRESTLHLV 70
>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|E Chain E, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|G Chain G, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
Length = 73
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal
Form
Length = 72
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX
pdb|1YX6|B Chain B, Solution Structure Of S5a Uim-2UBIQUITIN COMPLEX
Length = 98
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|1YJ1|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|1YJ1|C Chain C, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|2FCM|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCM|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCN|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Val35]ubiquitin With A Cubic Space Group
pdb|2FCN|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Val35]ubiquitin With A Cubic Space Group
Length = 76
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
++I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEXIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 91
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 18 MQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 77
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 78 IQKESTLHLV 87
>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|1YIW|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|1YIW|C Chain C, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|2FCQ|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
pdb|2FCQ|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
Length = 76
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
++I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 LQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually
Exclusive Folding: Insertion Of Ubiquitin Into Position
103 Of Barnase
Length = 189
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 44/69 (63%)
Query: 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGV 61
+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS +
Sbjct: 107 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 166
Query: 62 KDEDLVMMV 70
+ E + +V
Sbjct: 167 QKESTLHLV 175
>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|F Chain F, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
Length = 76
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G ++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGXQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQRESTLHLV 70
>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab
Bound To Linear Ubiquitin
pdb|3U30|D Chain D, Crystal Structure Of A Linear-Specific Ubiquitin Fab
Bound To Linear Ubiquitin
Length = 172
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 81 IQKESTLHLV 90
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 156
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 157 IQKESTLHLV 166
>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|G Chain G, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|C Chain C, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|E Chain E, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVO|A Chain A, Nemo Cozi Domain In Complex With Diubiquitin In C2 Space
Group
pdb|2ZVO|G Chain G, Nemo Cozi Domain In Complex With Diubiquitin In C2 Space
Group
pdb|3AXC|A Chain A, Crystal Structure Of Linear Diubiquitin
Length = 154
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 62
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 63 IQKESTLHLV 72
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 79 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 139 IQKESTLHLV 148
>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin
Length = 152
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 137 IQKESTLHLV 146
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 44/69 (63%)
Query: 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGV 61
+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS +
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62 KDEDLVMMV 70
+ E + +V
Sbjct: 62 QKESTLHLV 70
>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67
Length = 76
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E +V
Sbjct: 61 IQKESTXHLV 70
>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin
Variant
Length = 76
Score = 48.5 bits (114), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+LL+ +++ + LS
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLFARKQLEDGRTLSDYN 62
Query: 61 VKDEDLVMMV 70
+ E + +V
Sbjct: 63 IHKESFLYLV 72
>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex
With Linear Di- Ubiquitin
pdb|3B08|D Chain D, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex
With Linear Di- Ubiquitin
pdb|3B08|G Chain G, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex
With Linear Di- Ubiquitin
pdb|3B08|J Chain J, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex
With Linear Di- Ubiquitin
pdb|3B0A|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex
With Linear Di- Ubiquitin
pdb|3B0A|D Chain D, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex
With Linear Di- Ubiquitin
Length = 152
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 137 IQKESTLHLV 146
>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
Length = 91
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 77
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 78 IQKESTLHLV 87
>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|F Chain F, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 152
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 137 IQKESTLHLV 146
>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1S1Q|D Chain D, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1G6J|A Chain A, Structure Of Recombinant Human Ubiquitin In Aot Reverse
Micelles
Length = 76
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 44/69 (63%)
Query: 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGV 61
+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS +
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 62 KDEDLVMMV 70
+ E + +V
Sbjct: 62 QKESTLHLV 70
>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|D Chain D, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 85
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 41/62 (66%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 VK 62
++
Sbjct: 64 IQ 65
>pdb|3H7S|A Chain A, Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin
Reveal A Highly Extended Chain Architecture
pdb|3H7S|B Chain B, Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin
Reveal A Highly Extended Chain Architecture
Length = 76
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 42/65 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDED 65
++ +
Sbjct: 61 IQKRE 65
>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A
pdb|2ZCB|B Chain B, Crystal Structure Of Ubiquitin P37aP38A
pdb|2ZCB|C Chain C, Crystal Structure Of Ubiquitin P37aP38A
Length = 76
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P +T+ENVKA ++ + + QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIAADQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 85
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLS 57
MRI V T + I L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS
Sbjct: 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLS 60
>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 128
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 43/70 (61%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+ +T+ENVKA ++ + +P QQ+L++ G+++ L+
Sbjct: 1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core
Mutant Of Ubiquitin, 1d7
Length = 76
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M++ + T + ++++V+P +TVEN KA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQVFLKTLTGKTVTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTIHLV 70
>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|MM Chain m, Cryo-Em Structure Of The 60s Ribosomal Subunit In
Complex With Arx1 And Rei1
Length = 128
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+ +T++NVK+ ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDED---LVMMVSNAASSPATNNLS--FNPDGS 89
++ E LV+ + P+ L+ +N D S
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCDKS 94
>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBR|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 88
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSA 58
M I V T + I +D++P + VE +K +E + +P QQQ+L+Y+G++MN+ EK +A
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAA 69
>pdb|1UEL|A Chain A, Solution Structure Of Ubiquitin-Like Domain Of Hhr23b
Complexed With Ubiquitin-Interacting Motif Of
Proteasome Subunit S5a
Length = 95
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 6/88 (6%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVET---QVPLQQQQLLYNGREMNNAEKLS 57
M++T+ T +Q +D+DP ETV+ +K +E E P+ Q+L+Y G+ +N+ L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 ALGVKDED-LVMMVS--NAASSPATNNL 82
+ +++ +V+MV+ A S+PA L
Sbjct: 61 EYKIDEKNFVVVMVTKPKAVSTPAPATL 88
>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|B Chain B, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|C Chain C, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|D Chain D, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
Length = 83
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 40/60 (66%)
Query: 11 QIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70
+ I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS ++ E + +V
Sbjct: 18 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 77
>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant
Of Ubiquitin.
pdb|2GBJ|B Chain B, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant
Of Ubiquitin
Length = 84
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 40/60 (66%)
Query: 11 QIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70
+ I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ + LS ++ E + +V
Sbjct: 19 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 78
>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 88
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSA 58
M I V T + I +D++P + VE +K +E + +P QQQ+L+Y+G++MN+ EK +A
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAA 69
>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a),
A Trapped Ubiquitin-Like Protein Activation Complex
pdb|2NVU|J Chain J, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a),
A Trapped Ubiquitin-Like Protein Activation Complex
Length = 81
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSA 58
M I V T + I +D++P + VE +K +E + +P QQQ+L+Y+G++MN+ EK +A
Sbjct: 6 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAA 62
>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
pdb|4F8C|D Chain D, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
pdb|4FBJ|B Chain B, Structure Of The Cif:nedd8 Complex - Photorhabdus
Luminescens Cycle Inhibiting Factor In Complex With
Human Nedd8
Length = 88
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSA 58
M I V T + I +D++P + VE +K +E + +P QQQ+L+Y+G++MN+ EK +A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAA 57
>pdb|1NDD|B Chain B, Structure Of Nedd8
pdb|1NDD|A Chain A, Structure Of Nedd8
pdb|1NDD|C Chain C, Structure Of Nedd8
pdb|1NDD|D Chain D, Structure Of Nedd8
pdb|1R4M|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1XT9|B Chain B, Crystal Structure Of Den1 In Complex With Nedd8
pdb|2KO3|A Chain A, Nedd8 Solution Structure
Length = 76
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSA 58
M I V T + I +D++P + VE +K +E + +P QQQ+L+Y+G++MN+ EK +A
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAA 57
>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With
Nedd8 And Mln4924
pdb|3GZN|J Chain J, Structure Of Nedd8-Activating Enzyme In Complex With
Nedd8 And Mln4924
Length = 82
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSA 58
M I V T + I +D++P + VE +K +E + +P QQQ+L+Y+G++MN+ EK +A
Sbjct: 7 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAA 63
>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex
Length = 77
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSA 58
M I V T + I +D++P + VE +K +E + +P QQQ+L+Y+G++MN+ EK +A
Sbjct: 2 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAA 58
>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Nedd8
Length = 78
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSA 58
M I V T + I +D++P + VE +K +E + +P QQQ+L+Y+G++MN+ EK +A
Sbjct: 3 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMND-EKTAA 59
>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBR|B Chain B, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBR|C Chain C, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
Length = 81
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVET-----QVPLQQQQLLYNGREMNNAEK 55
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIFAGKQLEDGRT 60
Query: 56 LSALGVKDEDLVMMV 70
LS ++ E + +V
Sbjct: 61 LSDYNIQKESTLHLV 75
>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating
Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|D Chain D, Crystal Structure Of S. Pombe Ubiquitin Activating
Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 96
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+ +T++NVK+ ++ + +P QQ+L++ G+++ + LS
Sbjct: 21 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 80
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 81 IQKESTLHLV 90
>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural
Specificity
Length = 76
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M++ V T + ++++++P +TVEN+KA ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQLFVKTLTGKTLTVELEPSDTVENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 LQKESTIHLV 70
>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1
(uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And
Atp/mg
Length = 83
Score = 45.1 bits (105), Expect = 7e-05, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 43/70 (61%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+ +T++NV+A ++ +P QQ+L++ GR++ + L+
Sbjct: 8 MQIFVRTLTGRTITLEVESSDTIDNVRARIQDREGIPPDQQRLIFAGRQLEDGRTLADYN 67
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 68 IQRESTLHLV 77
>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Ubiquitin
Length = 98
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+ +T++NVK+ ++ + +P QQ+L++ G+++ + LS
Sbjct: 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 82
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 83 IQKESTLHLV 92
>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position Two
pdb|3L10|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position One
Length = 169
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+ +T++NVK+ ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex
pdb|1Q0W|B Chain B, Solution Structure Of Vps27 Amino-Terminal Uim-Ubiquitin
Complex
pdb|1WR1|A Chain A, The Complex Sturcture Of Dsk2p Uba With Ubiquitin
pdb|2G3Q|B Chain B, Solution Structure Of Ede1 Uba-Ubiquitin Complex
pdb|2JT4|B Chain B, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
pdb|3CMM|B Chain B, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|D Chain D, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|2L00|B Chain B, Solution Structure Of The Non-Covalent Complex Of The
Znf216 A20 Domain With Ubiquitin
Length = 76
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+ +T++NVK+ ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba
Histolytica To 2.15 Angstrom
pdb|4GSW|B Chain B, Crystal Structure Of Ubiquitin From Entamoeba
Histolytica To 2.15 Angstrom
pdb|4GU2|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba
Histolytica To 1.35 Angstrom
Length = 80
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 45/70 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+P+++++ +KA ++ + +P QQ+L++ G+++ + LS
Sbjct: 4 MQIFVKTLTGKTITLEVEPNDSIDAIKAKIQEKEGIPPDQQRLIFAGKQLEEGKTLSDYN 63
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 64 IQKESTLHLV 73
>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 152
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+ +T++NVK+ ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site
Within The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 79
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+ +T++NVK+ ++ + +P QQ+L++ G+++ + LS
Sbjct: 4 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 63
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 64 IQKESTLHLV 73
>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure,
Dynamics And Thermodynamic Consequences
Length = 82
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 42/70 (60%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T I+L+V+ +T++NVK+ ++ +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
Length = 152
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+ +T++NVK+ ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 61 IQKESTLHLV 70
>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBM|B Chain B, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBM|C Chain C, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBM|D Chain D, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBN|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
Length = 84
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLE--------VETQVPLQQQQLLYNGREMNN 52
M+I V T + I+L+V+P +T+ENVKA ++ +P QQ+L++ G+++ +
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIFAGKQLED 60
Query: 53 AEKLSALGVKDEDLVMMV 70
LS ++ E + +V
Sbjct: 61 GRTLSDYNIQKESTLHLV 78
>pdb|1P1A|A Chain A, Nmr Structure Of Ubiquitin-Like Domain Of Hhr23b
Length = 85
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVET---QVPLQQQQLLYNGREMNNAEKLS 57
M++T+ T +Q +D+DP ETV+ +K +E E P+ Q+L+Y G+ +N+ L
Sbjct: 4 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 63
Query: 58 ALGVKDEDLVMMVSNAASSPAT 79
+ +++ V+++ + +T
Sbjct: 64 EYKIDEKNFVVVMVTKPKAVST 85
>pdb|4HK2|A Chain A, U7ub25.2540
pdb|4HK2|B Chain B, U7ub25.2540
pdb|4HK2|C Chain C, U7ub25.2540
pdb|4HK2|D Chain D, U7ub25.2540
Length = 78
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 38/64 (59%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V + +L+V+P +T+ENVKA ++ + +P QQ L++ G+ + + LS
Sbjct: 3 MQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSDYN 62
Query: 61 VKDE 64
++ E
Sbjct: 63 IQKE 66
>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin
Differentially Affect Its Recognition By Receptor
Proteins
Length = 76
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 43/70 (61%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I+L+V+ +T++NVK+ ++ + +P QQ+L++ G+++ + LS
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 VKDEDLVMMV 70
++ E + V
Sbjct: 61 IQKESTLHSV 70
>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant
Length = 77
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V + +L+V+P +T+ENVKA ++ + P QQ+L++ G+++ + LS
Sbjct: 2 MQIFVKCLTGKTNTLEVEPSDTIENVKAKIQDKIGYPPDQQRLIFAGKQLEDGRTLSDYN 61
Query: 61 VKDEDLVMMV 70
++ E + V
Sbjct: 62 IQKESTLHCV 71
>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein
Length = 82
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 42/70 (60%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
M+I V T + I++DVD +TV VKA + + +P QQ+L++ G+++ ++ +S
Sbjct: 6 MQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIFGGKQLEDSNAMSDYN 65
Query: 61 VKDEDLVMMV 70
V+ E + +V
Sbjct: 66 VQKESTLHLV 75
>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of
Human Ubiquitin
pdb|1GJZ|B Chain B, Solution Structure Of A Dimeric N-Terminal Fragment Of
Human Ubiquitin
Length = 53
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 36/50 (72%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREM 50
M+I V T + I+L+V+P +T+ENVKA ++ + +P QQ+L++ G+++
Sbjct: 3 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQL 52
>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant
Of Ubiquitin
Length = 88
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 44/70 (62%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
+++ + T + +++++P +T+EN+KA ++ + +P QQ+L++ G+++ + LS
Sbjct: 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 69
Query: 61 VKDEDLVMMV 70
++ E + +V
Sbjct: 70 IQKESTLHLV 79
>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|B Chain B, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 81
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 3 ITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSA 58
I V T + I +D++P + VE +K +E + +P QQQ+L+Y+G++ N+ EK +A
Sbjct: 8 IKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQXND-EKTAA 62
>pdb|3M62|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
Length = 106
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 47/93 (50%)
Query: 3 ITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVK 62
+T ++ + LD++P T+ K L Q +L+Y+G+ + +++ +S G+K
Sbjct: 4 LTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLK 63
Query: 63 DEDLVMMVSNAASSPATNNLSFNPDGSAVNPAA 95
D D V+ + + S T +P+ S+V+ A
Sbjct: 64 DGDQVVFMVSQKKSTKTKVTERDPNSSSVDKLA 96
>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN
Length = 114
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 42/69 (60%)
Query: 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGV 61
+I T + I+L+V+ +T++NVK+ ++ + +P QQ+L++ G+++ + LS +
Sbjct: 11 QIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNI 70
Query: 62 KDEDLVMMV 70
+ E + +V
Sbjct: 71 QRESTLHLV 79
>pdb|1V5O|A Chain A, Solution Structure Of The Ubiquitin-Like Domain From
Mouse Hypothetical 1700011n24rik Protein
Length = 102
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 10 EQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAE-KLSALGVKDEDLVM 68
E SL V+P + N + L E+E+ VP ++ Q++Y + + + L + G+KD D+V+
Sbjct: 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVV 80
Query: 69 MV 70
++
Sbjct: 81 LL 82
>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like
Domain In Human Ubiquitin-Like Protein 4a (Gdx)
Length = 81
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLS 57
M++TV + SL V E V +K L+ + VP++QQ+LL+ G+ + + ++LS
Sbjct: 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLS 64
>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1
Length = 76
Score = 37.4 bits (85), Expect = 0.016, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 32/50 (64%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREM 50
M I V T + I +D++P +T++ +K +E + +P QQ+L+Y G+++
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQL 50
>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like
Domain In The Human Bat3 Protein
Length = 86
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
+ + V T D Q + V V+ K + +P ++Q+L+Y GR + + +KL
Sbjct: 8 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 67
Query: 61 VKDEDLVMMVSNAASSPATN 80
V + ++ +V A S P++
Sbjct: 68 VGGK-VIHLVERAPSGPSSG 86
>pdb|1WH3|A Chain A, Solution Structure Of C-Terminal Ubiquitin Like Domain
Of Human 2'-5'-Oligoadenylate Synthetase-Like Protain
(P59 Oasl)
Length = 87
Score = 35.4 bits (80), Expect = 0.054, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 41/79 (51%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
+++ V D + ++P+ + +K +E + +P +QQQL + G+ + + L G
Sbjct: 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 67
Query: 61 VKDEDLVMMVSNAASSPAT 79
++D D +++ S P++
Sbjct: 68 IQDSDTLILSKKKGSGPSS 86
>pdb|1WXV|A Chain A, Solution Structure Of The Ubiquitin Domain Of Bcl-2
Binding Athanogene-1
Length = 92
Score = 35.0 bits (79), Expect = 0.084, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 1 MRITVMTADEQ----IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEK- 55
+ +TV ++E+ + S V+++ ++E VP Q+L++ G+ + E
Sbjct: 8 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 67
Query: 56 LSALGVKDEDLVMMVSNAASSPAT 79
LSALG++D VM++ S P++
Sbjct: 68 LSALGIQDGCRVMLIGKKNSGPSS 91
>pdb|2QSF|X Chain X, Crystal Structure Of The Rad4-Rad23 Complex
pdb|2QSG|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Uv-Damaged Dna
pdb|2QSH|X Chain X, Crystal Structure Of Rad4-Rad23 Bound To A Mismatch Dna
Length = 171
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 376 VAKLVELGFGREAVIQALKLFDGNEEQAAGFLF 408
+++L ELGF R+ VIQ D NEE AA LF
Sbjct: 134 ISRLCELGFERDLVIQVYFACDKNEEAAANILF 166
>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3
(Bat3) From Homo Sapiens At 1.80 A Resolution
pdb|4DWF|B Chain B, Crystal Structure Of A Hla-B Associated Transcript 3
(Bat3) From Homo Sapiens At 1.80 A Resolution
Length = 90
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
+ + V T D Q + V V+ K + +P ++Q+L+Y GR + + +KL
Sbjct: 6 LEVLVKTLDSQTRTFIVGAQXNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 65
Query: 61 V 61
V
Sbjct: 66 V 66
>pdb|1V5T|A Chain A, Solution Structure Of The Ubiquitin-Like Domain From
Mouse Hypothetical 8430435i17rik Protein
Length = 90
Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 21 ETVENVKALLEVETQVPLQQQQLL---YNGREMNNAEKLSALGVKDEDLVMMVSNAASSP 77
+TV ++K L+ T V ++Q+LL G+ N KL AL +K +MM+ S P
Sbjct: 28 DTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRESGP 87
Query: 78 AT 79
++
Sbjct: 88 SS 89
>pdb|2KAN|A Chain A, Solution Nmr Structure Of Ubiquitin-Like Domain Of
Arabidopsis Thaliana Protein At2g32350. Northeast
Structural Genomics Consortium Target Ar3433a
Length = 94
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREM-NNAEKLSAL 59
+ +TV +Q +++VD ETV ++K + + P+++ QL Y+G E+ ++ L+
Sbjct: 16 IHVTVKFPSKQF-TVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY 74
Query: 60 GVKD 63
G+ +
Sbjct: 75 GITE 78
>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6
pdb|4EEW|B Chain B, Crystal Structure Of The Ubl Domain Of Bag6
Length = 88
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALG 60
+ + V T D Q + V V+ K + +P ++Q+L+Y GR + + +KL
Sbjct: 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 77
Query: 61 V 61
V
Sbjct: 78 V 78
>pdb|3SHQ|A Chain A, Crystal Structure Of Ublcp1
Length = 320
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 15 LDVDPHETVENVKALLEVETQVPLQQQQLL---YNGREMNNAEKLSALGVKDEDLVMMVS 71
+D+ +TVE ++ + +TQV ++Q+LL Y G+ + K+SAL +K +MMV
Sbjct: 19 VDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVG 78
Query: 72 NA 73
+
Sbjct: 79 ST 80
>pdb|3KN1|A Chain A, Crystal Structure Of Golgi Phosphoprotein 3 N-Term
Truncation Variant
Length = 249
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 16 DVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGV-KDEDLVMMVSNAA 74
+ P ETV+N LL ET PL+ L N RE A+ L GV E ++ +
Sbjct: 93 ETQPPETVQNWIELLSGETWNPLKLHYQLRNVRE-RLAKNLVEKGVLTTEKQNFLLFDXT 151
Query: 75 SSPATNN 81
+ P TNN
Sbjct: 152 THPLTNN 158
>pdb|2LBC|A Chain A, Solution Structure Of Tandem Uba Of Usp13
Length = 126
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 373 EAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFG 409
E VA + +GF R IQAL+ + N E+A ++F
Sbjct: 79 EEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFS 115
>pdb|1WF9|A Chain A, Solution Structure Of A Novel Beta-Grasp Fold Like
Domain Of Hypothetical Protein (Arabidopsis Thaliana)
Length = 107
Score = 28.1 bits (61), Expect = 8.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 13 ISLDVDPHETVENVKALLEVETQVPLQQQQLLYN 46
+S+D PH TV +K L++ + Q+P+ Q L N
Sbjct: 21 VSVD-GPHITVSQLKTLIQDQLQIPIHNQTLSTN 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,691,927
Number of Sequences: 62578
Number of extensions: 338896
Number of successful extensions: 1345
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1243
Number of HSP's gapped (non-prelim): 108
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)