Query 015264
Match_columns 410
No_of_seqs 423 out of 1865
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8i_A Protein DDI1 homolog 1; 100.0 6.5E-36 2.2E-40 261.6 14.1 136 185-320 13-148 (148)
2 2i1a_A DNA damage-inducible pr 100.0 4.9E-35 1.7E-39 256.4 14.2 148 171-321 1-148 (148)
3 1oqy_A HHR23A, UV excision rep 99.9 4.1E-22 1.4E-26 197.7 18.5 73 1-73 8-84 (368)
4 3plu_A Ubiquitin-like modifier 99.7 3.9E-18 1.3E-22 135.6 9.3 70 1-70 22-91 (93)
5 2kk8_A Uncharacterized protein 99.7 1.6E-17 5.5E-22 131.1 9.5 72 1-72 11-83 (84)
6 3phx_B Ubiquitin-like protein 99.7 2.3E-17 7.8E-22 128.4 10.0 72 1-72 5-76 (79)
7 1uh6_A Ubiquitin-like 5; beta- 99.7 1.4E-17 4.8E-22 134.9 7.8 71 1-71 29-99 (100)
8 3m62_B UV excision repair prot 99.7 1.9E-17 6.4E-22 136.5 8.7 75 1-75 2-76 (106)
9 1uel_A HHR23B, UV excision rep 99.7 9.9E-17 3.4E-21 129.5 12.5 74 1-74 1-77 (95)
10 4dwf_A HLA-B-associated transc 99.7 4.2E-17 1.4E-21 130.1 10.2 74 1-75 6-79 (90)
11 4fbj_B NEDD8; effector-HOST ta 99.7 5.5E-17 1.9E-21 129.1 10.3 72 1-72 1-72 (88)
12 2wyq_A HHR23A, UV excision rep 99.7 7.9E-17 2.7E-21 126.9 10.5 75 1-75 6-83 (85)
13 2lxa_A Ubiquitin-like protein 99.7 3.8E-17 1.3E-21 129.7 7.4 73 1-73 2-78 (87)
14 2faz_A Ubiquitin-like containi 99.7 1.2E-16 4E-21 123.9 10.0 73 1-73 3-77 (78)
15 3v6c_B Ubiquitin; structural g 99.7 1E-16 3.5E-21 128.3 9.9 72 1-72 18-89 (91)
16 2bwf_A Ubiquitin-like protein 99.7 1.4E-16 4.8E-21 122.9 10.3 72 1-73 5-76 (77)
17 1ndd_A NEDD8, protein (ubiquit 99.7 1.8E-16 6.2E-21 121.7 10.7 72 1-72 1-72 (76)
18 4eew_A Large proline-rich prot 99.7 1.5E-16 5.2E-21 126.3 9.7 70 1-71 18-87 (88)
19 4a20_A Ubiquitin-like protein 99.7 1.2E-16 4.2E-21 129.5 9.2 73 1-73 20-96 (98)
20 3a9j_A Ubiquitin; protein comp 99.7 3E-16 1E-20 120.5 10.9 73 1-73 1-73 (76)
21 3dbh_I NEDD8; cell cycle, acti 99.7 2E-16 6.9E-21 125.3 9.2 72 1-72 13-84 (88)
22 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 3.8E-16 1.3E-20 126.0 10.9 72 1-72 2-73 (96)
23 4hcn_B Polyubiquitin, ubiquiti 99.7 3.1E-16 1.1E-20 127.3 10.3 72 1-72 23-94 (98)
24 3n3k_B Ubiquitin; hydrolase, p 99.7 2.8E-16 9.5E-21 123.6 9.6 73 1-73 4-76 (85)
25 1wju_A NEDD8 ultimate buster-1 99.7 2.3E-16 7.9E-21 127.7 9.3 73 2-74 17-93 (100)
26 2dzi_A Ubiquitin-like protein 99.7 3.4E-16 1.2E-20 122.0 9.8 72 1-72 8-79 (81)
27 1sif_A Ubiquitin; hydrophobic 99.7 4.2E-16 1.4E-20 124.0 10.4 72 1-72 10-81 (88)
28 2hj8_A Interferon-induced 17 k 99.7 1.8E-16 6E-21 126.2 8.2 73 1-73 5-77 (88)
29 2uyz_B Small ubiquitin-related 99.7 2.4E-16 8.1E-21 122.6 8.4 72 1-72 4-75 (79)
30 3mtn_B UBA80, ubcep1, ubiquiti 99.7 4.6E-16 1.6E-20 122.2 9.9 72 1-72 4-75 (85)
31 1wy8_A NP95-like ring finger p 99.6 7.8E-16 2.7E-20 122.4 10.9 73 1-73 8-82 (89)
32 1ttn_A DC-UBP, dendritic cell- 99.6 3.4E-16 1.2E-20 128.9 8.9 75 1-75 24-98 (106)
33 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 4.9E-16 1.7E-20 122.9 9.2 73 1-73 8-80 (87)
34 1v5o_A 1700011N24RIK protein; 99.6 5.5E-16 1.9E-20 126.8 9.7 74 1-74 8-86 (102)
35 1wgd_A Homocysteine-responsive 99.6 8E-16 2.8E-20 123.6 9.9 73 1-73 8-86 (93)
36 1yx5_B Ubiquitin; proteasome, 99.6 1.4E-15 4.7E-20 123.3 11.3 73 1-73 1-73 (98)
37 1wyw_B Ubiquitin-like protein 99.6 5.9E-16 2E-20 125.4 8.7 72 1-72 22-93 (97)
38 2kan_A Uncharacterized protein 99.6 8E-16 2.7E-20 123.9 9.4 72 1-73 16-88 (94)
39 2klc_A Ubiquilin-1; ubiquitin- 99.6 1.5E-15 5E-20 124.0 10.7 73 1-74 26-98 (101)
40 1yqb_A Ubiquilin 3; structural 99.6 1.1E-15 3.7E-20 124.6 9.3 74 1-75 23-96 (100)
41 1wx7_A Ubiquilin 3; ubiquitin- 99.6 2.2E-15 7.7E-20 124.0 10.7 73 1-74 18-90 (106)
42 1v2y_A 3300001G02RIK protein; 99.6 4.2E-16 1.4E-20 127.6 6.1 73 1-73 8-96 (105)
43 3vdz_A Ubiquitin-40S ribosomal 99.6 2E-15 6.8E-20 125.4 10.0 72 1-72 36-107 (111)
44 2daf_A FLJ35834 protein; hypot 99.6 1.5E-15 5E-20 125.3 8.8 73 2-74 17-90 (118)
45 1wx8_A Riken cDNA 4931431F19; 99.6 1.1E-15 3.8E-20 123.4 7.8 73 1-74 18-90 (96)
46 2l7r_A Ubiquitin-like protein 99.6 1.9E-15 6.6E-20 121.4 9.1 70 1-72 20-89 (93)
47 1v5t_A 8430435I17RIK protein; 99.6 1.8E-15 6.1E-20 120.9 8.8 73 1-74 8-84 (90)
48 3b1l_X E3 ubiquitin-protein li 99.4 5.6E-17 1.9E-21 125.0 0.0 72 1-72 1-72 (76)
49 1x1m_A Ubiquitin-like protein 99.6 3.2E-15 1.1E-19 123.3 9.8 75 1-75 13-102 (107)
50 2kdb_A Homocysteine-responsive 99.6 1.2E-15 4.1E-20 123.9 7.0 70 1-70 24-99 (99)
51 1wxv_A BAG-family molecular ch 99.6 4.1E-15 1.4E-19 119.1 9.8 74 1-75 8-87 (92)
52 1wgh_A Ubiquitin-like 3, HCG-1 99.6 4.4E-15 1.5E-19 123.7 10.2 75 1-75 17-101 (116)
53 3m63_B Ubiquitin domain-contai 99.6 9E-16 3.1E-20 125.3 5.9 72 1-73 29-100 (101)
54 1wgg_A Ubiquitin carboxyl-term 99.6 3.7E-15 1.3E-19 120.5 9.5 72 1-74 8-80 (96)
55 1wia_A Hypothetical ubiquitin- 99.6 3.6E-15 1.2E-19 120.2 9.2 72 1-75 8-80 (95)
56 2fnj_B Transcription elongatio 99.6 2.2E-15 7.6E-20 125.3 8.0 72 1-72 1-80 (118)
57 1j8c_A Ubiquitin-like protein 99.6 4.6E-15 1.6E-19 125.7 10.0 73 1-74 33-105 (125)
58 4ajy_B Transcription elongatio 99.6 3.1E-15 1.1E-19 124.0 8.4 73 1-73 1-81 (118)
59 3l0w_B Monoubiquitinated proli 99.6 6.8E-15 2.3E-19 131.1 11.2 72 1-72 1-72 (169)
60 2ojr_A Ubiquitin; lanthide-bin 99.6 9.2E-15 3.1E-19 121.3 10.3 72 1-72 36-107 (111)
61 2kd0_A LRR repeats and ubiquit 99.6 8.8E-15 3E-19 115.6 9.6 71 3-73 14-84 (85)
62 4dbg_A Ranbp-type and C3HC4-ty 99.6 9.9E-15 3.4E-19 119.1 9.8 72 1-72 25-99 (105)
63 1v86_A DNA segment, CHR 7, way 99.6 5.3E-15 1.8E-19 119.4 7.4 72 1-74 18-89 (95)
64 2gow_A HCG-1 protein, ubiquiti 99.6 8.7E-15 3E-19 123.6 9.1 75 1-75 18-102 (125)
65 2kdi_A Ubiquitin, vacuolar pro 99.5 2.2E-14 7.5E-19 119.6 10.9 72 2-73 11-82 (114)
66 3rt3_B Ubiquitin-like protein 99.5 1.6E-14 5.3E-19 127.3 10.0 72 1-72 82-153 (159)
67 1we6_A Splicing factor, putati 99.5 9.7E-15 3.3E-19 121.2 8.0 72 1-72 28-103 (111)
68 3q3f_A Ribonuclease/ubiquitin 99.5 1.4E-14 4.8E-19 130.8 9.2 72 1-72 106-177 (189)
69 3rt3_B Ubiquitin-like protein 99.5 2.8E-14 9.5E-19 125.6 10.7 73 1-73 3-77 (159)
70 1se9_A Ubiquitin family; ubiqu 99.5 2.8E-14 9.5E-19 120.1 9.3 73 1-73 17-103 (126)
71 3u30_A Ubiquitin, linear DI-ub 99.5 3.6E-14 1.2E-18 126.7 10.0 73 1-73 21-93 (172)
72 3b08_A Polyubiquitin-C, ubiqui 99.5 6.1E-14 2.1E-18 122.0 11.2 73 1-73 1-73 (152)
73 3u5e_m 60S ribosomal protein L 99.5 1.1E-15 3.7E-20 130.2 0.0 72 1-72 1-72 (128)
74 2dzj_A Synaptic glycoprotein S 99.5 4.4E-14 1.5E-18 112.3 6.7 69 1-69 11-85 (88)
75 4b6w_A Tubulin-specific chaper 99.5 1.2E-13 4.2E-18 109.1 9.0 72 2-73 4-84 (86)
76 3u5c_f 40S ribosomal protein S 99.5 3.7E-15 1.3E-19 130.3 0.0 71 1-71 1-71 (152)
77 1we7_A SF3A1 protein; structur 99.5 9.8E-14 3.4E-18 115.8 8.6 72 1-72 26-107 (115)
78 2kjr_A CG11242; UBL, ubiquitin 99.5 1.4E-13 4.9E-18 110.8 8.9 70 2-71 17-94 (95)
79 1wf9_A NPL4 family protein; be 99.5 8E-14 2.7E-18 114.9 7.6 74 1-75 8-97 (107)
80 3b08_A Polyubiquitin-C, ubiqui 99.5 2.3E-13 7.9E-18 118.3 10.9 73 1-73 77-149 (152)
81 3u30_A Ubiquitin, linear DI-ub 99.5 1.4E-13 4.7E-18 122.9 9.4 72 1-72 97-168 (172)
82 2dzm_A FAS-associated factor 1 99.5 9.5E-14 3.2E-18 112.7 7.0 72 1-73 9-82 (100)
83 2kj6_A Tubulin folding cofacto 99.4 2.6E-13 9E-18 109.6 8.2 71 2-72 16-95 (97)
84 1ify_A HHR23A, UV excision rep 99.4 5.6E-14 1.9E-18 99.0 3.5 42 369-410 5-46 (49)
85 1v6e_A Cytoskeleton-associated 99.4 4.7E-13 1.6E-17 107.8 8.8 74 2-75 9-90 (95)
86 2g3q_A Protein YBL047C; endocy 99.4 2.3E-13 7.9E-18 93.3 5.4 40 371-410 3-42 (43)
87 1vg5_A RSGI RUH-014, rhomboid 99.4 1.1E-12 3.7E-17 99.6 8.9 42 369-410 26-67 (73)
88 3ai5_A Yeast enhanced green fl 99.4 7.2E-13 2.5E-17 127.9 9.9 72 1-72 234-305 (307)
89 2kzr_A Ubiquitin thioesterase 99.4 9.3E-13 3.2E-17 104.1 6.7 73 1-74 1-79 (86)
90 1t0y_A Tubulin folding cofacto 99.3 3.8E-12 1.3E-16 107.2 8.9 75 1-75 7-89 (122)
91 2jy5_A Ubiquilin-1; UBA, alter 99.3 5.2E-12 1.8E-16 89.9 7.0 42 369-410 9-51 (52)
92 2xzm_9 RPS31E; ribosome, trans 99.3 2.4E-13 8.2E-18 122.1 0.0 66 1-71 1-66 (189)
93 3shq_A UBLCP1; phosphatase, hy 99.3 4.1E-12 1.4E-16 124.1 7.7 74 1-75 6-82 (320)
94 1wgn_A UBAP1, ubiquitin associ 99.3 2.1E-12 7.1E-17 92.6 4.0 38 372-409 19-56 (63)
95 1wji_A Tudor domain containing 99.3 3.2E-12 1.1E-16 94.6 5.2 41 370-410 7-47 (63)
96 1vej_A Riken cDNA 4931431F19; 99.3 7.4E-12 2.5E-16 95.1 7.2 42 369-410 26-68 (74)
97 2bwb_A Ubiquitin-like protein 99.3 4.9E-12 1.7E-16 87.6 5.7 40 371-410 6-46 (46)
98 2io1_B Small ubiquitin-related 99.3 1.5E-11 5.2E-16 98.7 9.3 72 1-72 8-79 (94)
99 1z96_A DNA-damage, UBA-domain 99.3 6.8E-12 2.3E-16 84.5 5.5 39 370-408 2-40 (40)
100 2dak_A Ubiquitin carboxyl-term 99.3 3.7E-12 1.3E-16 94.6 4.4 40 370-409 7-46 (63)
101 1wm3_A Ubiquitin-like protein 99.2 2.9E-11 1E-15 92.2 9.1 70 1-70 2-71 (72)
102 2knz_A Ubiquilin-4; cytoplasm, 99.2 5E-12 1.7E-16 90.4 4.5 41 370-410 9-50 (53)
103 3slz_A GAG-Pro-POL polyprotein 99.2 1.6E-11 5.5E-16 104.0 8.3 103 192-303 18-121 (132)
104 1dv0_A DNA repair protein HHR2 99.2 2.6E-12 8.9E-17 89.5 2.6 41 370-410 2-42 (47)
105 1fmb_A EIAV protease; hydrolas 99.2 3.1E-11 1.1E-15 98.4 9.1 96 195-297 7-104 (104)
106 2ooa_A E3 ubiquitin-protein li 99.2 1.1E-11 3.9E-16 85.8 5.3 37 372-408 11-47 (52)
107 1veg_A NEDD8 ultimate buster-1 99.2 1.2E-11 4E-16 95.9 5.9 40 370-409 27-66 (83)
108 2d9s_A CBL E3 ubiquitin protei 99.2 2.2E-11 7.5E-16 84.9 6.2 39 370-408 7-45 (53)
109 1wiv_A UBP14, ubiquitin-specif 99.2 1.4E-11 4.7E-16 94.0 5.2 40 371-410 28-67 (73)
110 2ekk_A UBA domain from E3 ubiq 99.2 2.1E-11 7.1E-16 85.1 5.5 40 370-410 7-46 (47)
111 3a4r_A Nfatc2-interacting prot 99.2 8.1E-11 2.8E-15 91.4 9.5 70 1-70 8-78 (79)
112 2io0_B Small ubiquitin-related 99.2 7.5E-11 2.6E-15 94.0 9.2 73 1-73 6-78 (91)
113 1whc_A RSGI RUH-027, UBA/UBX 3 99.1 1.8E-11 6.2E-16 91.0 3.8 39 371-409 8-47 (64)
114 1wr1_B Ubiquitin-like protein 99.1 3.4E-11 1.2E-15 87.3 4.9 40 371-410 16-56 (58)
115 2crn_A Ubash3A protein; compac 99.1 1.8E-11 6E-16 90.9 3.2 42 369-410 6-48 (64)
116 2d07_B Ubiquitin-like protein 99.1 2.1E-10 7.3E-15 91.8 9.5 72 1-72 18-89 (93)
117 2cpw_A CBL-interacting protein 99.1 2.8E-11 9.6E-16 89.9 3.9 39 372-410 19-58 (64)
118 1wz0_A Ubiquitin-like protein 99.1 2.1E-10 7E-15 93.7 8.1 73 1-73 25-97 (104)
119 2dag_A Ubiquitin carboxyl-term 99.1 7.9E-11 2.7E-15 90.0 5.2 40 370-409 7-47 (74)
120 2dah_A Ubiquilin-3; UBA domain 99.1 1E-10 3.5E-15 83.7 5.1 39 371-409 8-47 (54)
121 1wjn_A Tubulin-folding protein 99.1 3.4E-10 1.2E-14 91.3 8.6 72 2-73 11-93 (97)
122 2dai_A Ubadc1, ubiquitin assoc 99.1 1.1E-10 3.6E-15 91.1 4.8 40 371-410 28-67 (83)
123 2k8h_A Small ubiquitin protein 99.0 3.1E-10 1.1E-14 93.5 7.3 73 1-73 27-99 (110)
124 2eke_C Ubiquitin-like protein 99.0 6.1E-10 2.1E-14 91.0 8.8 71 1-72 32-102 (106)
125 2juj_A E3 ubiquitin-protein li 99.0 3.7E-10 1.3E-14 78.7 4.4 39 370-408 5-43 (56)
126 3ec0_A Protease; HIV-2, inhibi 99.0 2.5E-09 8.7E-14 85.8 9.9 92 195-297 7-99 (99)
127 1vek_A UBP14, ubiquitin-specif 99.0 4.7E-10 1.6E-14 87.8 5.0 40 370-409 27-67 (84)
128 2dna_A Unnamed protein product 99.0 3.6E-10 1.2E-14 83.8 3.9 40 371-410 18-58 (67)
129 2dkl_A Trinucleotide repeat co 99.0 6.5E-10 2.2E-14 87.0 5.4 38 373-410 22-59 (85)
130 2hs1_A HIV-1 protease; ultra-h 98.9 7.4E-09 2.5E-13 83.3 11.6 92 195-297 7-99 (99)
131 2oo9_A E3 ubiquitin-protein li 98.9 3.1E-09 1E-13 71.4 5.1 39 370-408 2-40 (46)
132 2cwb_A Chimera of immunoglobul 98.8 3.4E-09 1.2E-13 86.2 5.4 40 371-410 65-105 (108)
133 2lbc_A Ubiquitin carboxyl-term 98.8 3.9E-09 1.3E-13 89.2 5.4 40 371-410 77-116 (126)
134 3kyd_D Small ubiquitin-related 98.7 4.1E-08 1.4E-12 81.1 9.6 72 2-73 42-113 (115)
135 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.7 7.8E-08 2.7E-12 86.9 12.0 93 195-298 7-100 (203)
136 2hah_A Protease, retropepsin; 98.7 3.3E-08 1.1E-12 81.7 7.4 95 195-296 13-115 (116)
137 2pjh_A Protein NPL4, nuclear p 98.6 3E-08 1E-12 77.0 4.4 69 1-70 5-78 (80)
138 4ae4_A Ubiquitin-associated pr 98.6 3.1E-08 1.1E-12 82.4 4.5 38 372-409 76-113 (118)
139 2qsf_X RAD23, UV excision repa 98.6 4.1E-08 1.4E-12 86.3 4.9 42 369-410 127-168 (171)
140 1wj7_A Hypothetical protein (R 98.5 7.4E-08 2.5E-12 77.3 5.4 41 370-410 37-78 (104)
141 3pge_A SUMO-modified prolifera 98.5 4.4E-07 1.5E-11 82.1 9.1 71 2-73 31-101 (200)
142 3k9o_A Ubiquitin-conjugating e 98.5 1.1E-07 3.9E-12 86.6 5.0 41 369-409 160-200 (201)
143 3tix_A Ubiquitin-like protein 98.4 3.7E-07 1.3E-11 81.2 7.5 71 2-73 59-129 (207)
144 2cp8_A NEXT to BRCA1 gene 1 pr 98.3 6E-07 2.1E-11 63.4 4.4 40 370-409 7-47 (54)
145 3ka2_A [L-Ala51;Gly51']HIV-1 p 98.3 7.8E-06 2.7E-10 73.9 12.1 92 195-297 111-203 (203)
146 3goe_A DNA repair protein RAD6 98.3 6.1E-06 2.1E-10 62.4 9.4 68 3-70 12-80 (82)
147 4ae4_A Ubiquitin-associated pr 98.3 7.1E-07 2.4E-11 74.1 4.8 39 371-409 7-45 (118)
148 2jxx_A Nfatc2-interacting prot 98.2 7.4E-06 2.5E-10 65.6 9.0 69 2-70 27-96 (97)
149 3sqf_A Protease; folded monome 98.1 2.4E-06 8.1E-11 70.1 5.5 100 196-301 9-111 (114)
150 1oqy_A HHR23A, UV excision rep 98.1 4.9E-07 1.7E-11 89.6 1.3 41 369-409 322-362 (368)
151 3v7o_A Minor nucleoprotein VP3 98.1 3.3E-07 1.1E-11 82.6 0.0 72 1-73 22-93 (227)
152 2cos_A Serine/threonine protei 98.1 6E-06 2.1E-10 57.6 5.3 37 372-408 9-46 (54)
153 4efo_A Serine/threonine-protei 98.0 2.1E-05 7.1E-10 62.4 8.2 51 9-59 22-74 (94)
154 3e46_A Ubiquitin-conjugating e 98.0 5.8E-06 2E-10 77.7 5.1 41 369-409 212-252 (253)
155 2rsp_A RSV protease; hydrolase 97.9 7.5E-06 2.6E-10 68.2 4.1 93 195-296 9-122 (124)
156 2al3_A TUG long isoform; TUG U 97.8 8.7E-05 3E-09 58.1 8.9 75 1-75 10-84 (90)
157 2l76_A Nfatc2-interacting prot 97.7 0.0002 6.7E-09 56.6 9.3 70 2-72 23-92 (95)
158 3uf8_A Ubiquitin-like protein 97.7 8.9E-05 3.1E-09 67.7 8.5 71 2-73 23-93 (209)
159 2kc2_A Talin-1, F1; FERM, adhe 97.6 9E-05 3.1E-09 62.1 6.7 71 2-72 13-122 (128)
160 2bps_A YUKD protein; ubiquitin 97.6 0.00014 4.8E-09 56.0 6.8 68 2-69 6-80 (81)
161 3ix6_A TS, tsase, thymidylate 97.5 1.6E-05 5.3E-10 78.0 0.0 69 2-71 23-91 (360)
162 3qx1_A FAS-associated factor 1 97.3 0.0013 4.4E-08 50.9 8.5 69 2-71 9-82 (84)
163 1wgl_A TOLL-interacting protei 97.2 0.00044 1.5E-08 50.0 5.1 40 370-409 7-48 (59)
164 4da1_A Protein phosphatase 1K, 97.2 5.9E-05 2E-09 75.3 0.0 70 3-73 33-102 (389)
165 3liy_A Protease; hydrolase, hy 97.0 0.00092 3.1E-08 54.4 5.8 96 196-296 10-114 (116)
166 2pwq_A Ubiquitin conjugating e 97.0 0.0001 3.5E-09 67.6 0.0 39 372-410 177-215 (216)
167 2pma_A Uncharacterized protein 97.0 0.00075 2.6E-08 57.8 5.3 107 192-301 6-141 (146)
168 2dzk_A UBX domain-containing p 97.0 0.0048 1.6E-07 50.2 9.8 72 2-73 15-91 (109)
169 1otr_A Protein CUE2; protein-p 97.0 0.00058 2E-08 47.3 3.4 38 372-409 4-43 (49)
170 2cp9_A EF-TS, EF-TSMT, elongat 96.8 0.0016 5.5E-08 47.6 5.2 37 372-408 9-46 (64)
171 3ihp_A Ubiquitin carboxyl-term 96.8 0.0011 3.8E-08 72.6 5.7 40 370-409 718-757 (854)
172 1v92_A NSFL1 cofactor P47; 3-h 96.6 0.002 6.8E-08 43.9 4.3 38 372-409 5-43 (46)
173 2dal_A Protein KIAA0794; FAS a 96.6 0.0031 1.1E-07 46.0 5.5 40 370-409 13-53 (62)
174 1wj4_A KIAA0794 protein; UBX d 96.6 0.0078 2.7E-07 50.1 8.4 70 2-72 45-119 (124)
175 2dhy_A CUE domain-containing p 96.4 0.01 3.4E-07 43.9 7.0 41 369-409 15-57 (67)
176 1tr8_A Conserved protein (MTH1 96.1 0.0068 2.3E-07 48.7 4.9 37 371-407 64-101 (102)
177 2cr5_A Reproduction 8; UBX dom 95.9 0.023 8E-07 46.1 7.7 71 2-73 25-99 (109)
178 2l32_A Small archaeal modifier 95.9 0.028 9.6E-07 42.3 7.6 61 1-71 1-61 (74)
179 2dzl_A Protein FAM100B; UBA-li 95.8 0.017 6E-07 42.5 5.9 36 374-409 19-55 (66)
180 2dam_A ETEA protein; KIAA0887, 95.8 0.011 3.8E-07 43.7 4.9 40 370-409 16-57 (67)
181 1s3s_G P47 protein; AAA ATPase 95.7 0.026 9E-07 47.1 7.4 66 2-67 54-123 (127)
182 1q02_A Sequestosome 1; helical 95.7 0.0065 2.2E-07 42.0 2.7 39 370-408 8-48 (52)
183 1pve_A HHR23B, UV excision rep 95.2 0.017 5.8E-07 43.2 4.0 40 94-134 16-59 (72)
184 3e21_A HFAF1, FAS-associated f 95.2 0.021 7.2E-07 38.7 4.0 38 371-408 4-43 (45)
185 3qvc_A Histo-aspartic protease 95.2 0.16 5.6E-06 51.3 12.5 92 194-287 136-251 (451)
186 2qsf_X RAD23, UV excision repa 95.0 0.012 4.2E-07 51.5 3.0 41 94-135 36-80 (171)
187 4dbg_B Ring finger protein 31; 94.9 0.019 6.3E-07 49.3 3.7 35 373-407 103-138 (162)
188 2f4m_B UV excision repair prot 94.9 0.019 6.6E-07 41.5 3.3 39 94-133 14-56 (61)
189 2jys_A Protease/reverse transc 94.8 0.14 4.9E-06 39.8 8.2 68 199-273 10-77 (107)
190 2di0_A Activating signal coint 94.6 0.072 2.5E-06 39.6 5.9 42 369-410 10-53 (71)
191 1ryj_A Unknown; beta/alpha pro 94.6 0.22 7.6E-06 36.7 8.7 61 1-71 5-65 (70)
192 1tte_A Ubiquitin-conjugating e 94.3 0.028 9.5E-07 51.3 3.9 30 371-400 168-197 (215)
193 2daj_A KIAA0977 protein, COBL- 94.2 0.095 3.2E-06 40.2 5.9 67 2-71 12-81 (91)
194 1miq_A Plasmepsin; aspartic pr 94.0 0.2 6.7E-06 49.3 9.4 92 194-287 61-176 (375)
195 4e71_A Plexin-B2, MM1; transme 93.8 0.34 1.2E-05 39.2 8.8 63 10-72 23-110 (111)
196 2x0b_A Renin; hydrolase-hormon 93.6 0.22 7.7E-06 49.1 9.1 92 194-287 60-175 (383)
197 1oey_A P67-PHOX, neutrophil cy 93.3 0.17 5.8E-06 38.9 5.9 45 1-47 6-50 (83)
198 1yg9_A Aspartic protease BLA G 93.3 0.21 7.1E-06 48.1 8.1 90 196-287 18-128 (330)
199 3psg_A Pepsinogen; hydrolase(a 93.2 0.35 1.2E-05 47.4 9.8 92 194-287 55-169 (370)
200 2r2o_A Plexin-B1; effector dom 93.2 0.41 1.4E-05 40.2 8.5 65 11-75 41-131 (138)
201 1bxo_A Protein (penicillopepsi 93.1 0.23 7.9E-06 47.6 8.2 93 194-287 14-126 (323)
202 2bju_A Plasmepsin II; aspartic 93.0 0.23 7.7E-06 50.3 8.3 92 194-287 137-252 (453)
203 1izd_A Aspartic proteinase; su 93.0 0.25 8.6E-06 47.3 8.2 93 194-287 14-126 (323)
204 3cms_A Chymosin B; hydrolase, 92.9 0.31 1.1E-05 46.6 8.8 91 195-287 14-127 (323)
205 3jyu_A Ubiquitin carboxyl-term 92.8 0.4 1.4E-05 43.9 8.9 60 13-72 154-220 (231)
206 1tzs_A Cathepsin E; hydrolase, 92.7 0.41 1.4E-05 46.3 9.3 92 194-287 22-136 (351)
207 1ibq_A Aspergillopepsin; aspar 92.6 0.33 1.1E-05 46.5 8.5 92 195-287 14-125 (325)
208 4a3p_A Ubiquitin carboxyl-term 92.5 0.25 8.5E-06 44.9 7.0 61 12-72 141-208 (217)
209 1b5f_A Protein (cardosin A); h 92.4 0.55 1.9E-05 42.9 9.4 91 195-287 13-127 (239)
210 3k1w_A Renin; protease, altern 92.4 0.35 1.2E-05 46.4 8.4 91 195-287 18-132 (341)
211 1mpp_A Pepsin; hydrolase(acid 92.2 0.44 1.5E-05 46.3 8.9 91 195-287 18-137 (361)
212 3ihp_A Ubiquitin carboxyl-term 92.2 0.082 2.8E-06 57.8 4.0 39 371-409 651-690 (854)
213 3c9x_A Trichoderma reesei aspa 91.8 0.51 1.8E-05 45.2 8.7 92 195-287 15-130 (329)
214 1oew_A Endothiapepsin; hydrola 91.5 0.68 2.3E-05 44.3 9.3 92 195-287 15-129 (329)
215 4aa9_A Chymosin; hydrolase, as 91.5 0.44 1.5E-05 45.3 7.8 91 195-287 11-124 (320)
216 1wkr_A Polyporopepsin; hydrola 91.1 0.55 1.9E-05 45.1 8.1 88 196-287 13-109 (340)
217 1dpj_A Proteinase A; proteinas 91.1 0.53 1.8E-05 45.0 8.0 91 195-287 13-126 (329)
218 3ivf_A Talin-1; FERM domain, c 90.8 0.72 2.5E-05 45.1 8.8 69 3-72 6-84 (371)
219 1htr_B Gastricsin; aspartyl pr 90.8 0.75 2.6E-05 43.9 8.7 92 194-287 11-125 (329)
220 1vjk_A Molybdopterin convertin 90.2 2.1 7.3E-05 33.4 9.5 66 1-71 10-93 (98)
221 3cms_A Chymosin B; hydrolase, 90.2 1.7 5.9E-05 41.3 10.7 100 200-305 197-320 (323)
222 3pvk_A Candidapepsin-2; hydrol 89.9 0.99 3.4E-05 43.2 8.8 92 195-287 12-128 (342)
223 1p3q_Q VPS9P, vacuolar protein 89.8 0.13 4.4E-06 36.1 1.7 39 371-409 11-51 (54)
224 3rpf_C Molybdopterin convertin 89.5 1.3 4.5E-05 32.7 7.3 66 1-71 1-69 (74)
225 1lya_B Cathepsin D; lysosomal 89.4 2.1 7.3E-05 38.7 10.2 100 200-305 107-238 (241)
226 1am5_A Pepsin, acid proteinase 89.3 0.7 2.4E-05 44.0 7.2 91 195-287 12-125 (324)
227 2apr_A Rhizopuspepsin; hydrola 89.3 1.2 4.2E-05 42.4 8.9 92 195-287 15-127 (325)
228 3fv3_A SAPP1P-secreted asparti 89.0 0.55 1.9E-05 45.0 6.1 92 195-287 12-122 (339)
229 1am5_A Pepsin, acid proteinase 88.1 0.88 3E-05 43.3 6.9 101 200-305 196-321 (324)
230 1tyg_B YJBS; alpha beta barrel 87.9 0.88 3E-05 35.1 5.5 56 9-71 26-82 (87)
231 1qdm_A Prophytepsin; aspartic 87.7 1.6 5.3E-05 44.4 8.8 92 194-287 51-166 (478)
232 3h6n_A Plexin-D1; structural g 87.7 3.1 0.0001 34.3 8.8 64 10-73 16-105 (127)
233 1yg9_A Aspartic protease BLA G 87.6 0.84 2.9E-05 43.7 6.4 102 201-306 202-327 (330)
234 1j71_A Candidapepsin, aspartic 87.6 1.7 5.9E-05 41.5 8.6 92 195-287 12-128 (334)
235 1dpj_A Proteinase A; proteinas 87.5 3.8 0.00013 38.9 11.1 100 200-305 200-326 (329)
236 2qho_B E3 ubiquitin-protein li 87.5 1.3 4.5E-05 30.0 5.3 40 370-409 7-48 (53)
237 2qzx_A Candidapepsin-5; aspart 87.2 1.9 6.6E-05 41.2 8.8 92 195-287 12-128 (342)
238 2juo_A GA-binding protein alph 87.1 1.4 4.8E-05 33.5 5.9 58 13-70 5-62 (89)
239 1miq_A Plasmepsin; aspartic pr 87.0 1.8 6.3E-05 42.2 8.6 99 201-306 247-372 (375)
240 2apr_A Rhizopuspepsin; hydrola 87.0 1.1 3.8E-05 42.7 6.9 93 207-306 212-322 (325)
241 4e74_A Plexin-A4; RBD, structu 86.9 2.4 8.3E-05 34.5 7.7 63 11-73 27-115 (117)
242 1lya_A Cathepsin D; lysosomal 86.8 1.4 4.6E-05 34.6 6.1 31 195-225 13-46 (97)
243 3lpj_A Beta-secretase 1; alzhe 86.7 1.6 5.5E-05 43.7 8.2 87 196-287 75-185 (455)
244 3qvc_A Histo-aspartic protease 86.7 3.1 0.00011 41.8 10.3 103 201-306 322-447 (451)
245 1izd_A Aspartic proteinase; su 86.2 1.5 5.3E-05 41.7 7.4 96 206-305 207-320 (323)
246 1ibq_A Aspergillopepsin; aspar 86.2 1.9 6.7E-05 41.0 8.1 103 201-305 197-322 (325)
247 1ixs_A Holliday junction DNA h 85.9 1.5 5.1E-05 31.5 5.4 26 371-396 16-41 (62)
248 1wkr_A Polyporopepsin; hydrola 85.8 1.4 4.8E-05 42.2 6.9 105 199-306 193-331 (340)
249 1htr_B Gastricsin; aspartyl pr 85.2 2.3 7.8E-05 40.5 8.1 99 201-305 198-326 (329)
250 1f0z_A THis protein; ubiquitin 85.2 0.94 3.2E-05 32.7 4.1 56 9-71 6-61 (66)
251 4aa9_A Chymosin; hydrolase, as 84.8 1.7 5.8E-05 41.1 7.0 99 201-305 195-317 (320)
252 2x0b_A Renin; hydrolase-hormon 84.7 4.9 0.00017 39.3 10.4 98 201-305 251-380 (383)
253 3vf3_A Beta-secretase 1; struc 84.6 1.7 5.8E-05 42.7 7.1 88 195-287 28-139 (402)
254 3aup_A SBG7S, BG, basic 7S glo 84.6 2.3 7.8E-05 41.8 8.0 91 196-287 22-163 (403)
255 3aup_A SBG7S, BG, basic 7S glo 84.0 3 0.0001 40.9 8.6 28 279-306 357-385 (403)
256 1bxo_A Protein (penicillopepsi 84.0 2.1 7.3E-05 40.7 7.3 100 201-305 198-320 (323)
257 2qzx_A Candidapepsin-5; aspart 83.9 7.1 0.00024 37.2 11.1 99 200-306 201-329 (342)
258 2bju_A Plasmepsin II; aspartic 83.9 4.2 0.00015 40.9 9.7 102 201-306 323-448 (453)
259 1oew_A Endothiapepsin; hydrola 83.8 3.2 0.00011 39.5 8.4 101 201-305 201-327 (329)
260 1vd2_A Protein kinase C, IOTA 83.5 3.4 0.00011 32.0 6.8 45 2-47 8-53 (89)
261 3po0_A Small archaeal modifier 83.5 7.4 0.00025 29.4 8.9 56 11-71 18-84 (89)
262 2f4m_B UV excision repair prot 83.3 1.2 4.2E-05 31.9 3.9 53 98-158 5-59 (61)
263 2kvr_A Ubiquitin carboxyl-term 83.2 1.3 4.5E-05 36.8 4.7 33 13-45 58-90 (130)
264 3c9x_A Trichoderma reesei aspa 83.1 2.3 7.9E-05 40.5 7.1 101 201-305 202-327 (329)
265 1j71_A Candidapepsin, aspartic 83.0 3.7 0.00013 39.1 8.6 100 200-306 201-322 (334)
266 3kuz_A Plexin-C1; structural g 82.8 10 0.00035 31.1 9.7 62 11-72 39-126 (126)
267 1mpp_A Pepsin; hydrolase(acid 82.8 1.9 6.6E-05 41.6 6.5 29 278-306 325-353 (361)
268 2llw_A Heat shock protein STI1 82.8 7 0.00024 28.8 8.0 29 91-121 7-35 (71)
269 1tzs_A Cathepsin E; hydrolase, 82.4 3.1 0.00011 40.0 7.8 100 200-306 209-340 (351)
270 3dwg_C 9.5 kDa culture filtrat 82.2 4 0.00014 31.3 6.9 69 1-71 1-88 (93)
271 1y8x_B Ubiquitin-activating en 82.1 1.2 4.2E-05 35.1 3.9 60 12-71 6-83 (98)
272 2ewy_A Beta-secretase 2; BACE2 82.0 4.3 0.00015 39.4 8.7 89 196-287 14-124 (383)
273 1pve_A HHR23B, UV excision rep 81.8 0.55 1.9E-05 34.9 1.6 55 98-160 7-63 (72)
274 2kl0_A Putative thiamin biosyn 81.6 1.7 6E-05 32.2 4.4 61 1-72 1-61 (73)
275 2k5p_A THis protein, thiamine- 81.3 1.6 5.6E-05 32.8 4.2 61 1-71 1-64 (78)
276 2kmm_A Guanosine-3',5'-BIS(dip 81.1 4.3 0.00015 29.4 6.4 63 1-72 1-63 (73)
277 3fv3_A SAPP1P-secreted asparti 80.6 1.8 6.3E-05 41.3 5.4 98 201-306 204-327 (339)
278 3onh_A Ubiquitin-activating en 80.5 3.2 0.00011 34.2 5.9 51 20-71 19-78 (127)
279 2qp8_A Beta-secretase 1; BACE1 79.4 4.5 0.00015 39.5 7.9 90 196-287 22-132 (395)
280 3psg_A Pepsinogen; hydrolase(a 79.4 9.3 0.00032 37.0 10.1 99 201-305 241-367 (370)
281 3pvk_A Candidapepsin-2; hydrol 79.1 3.1 0.00011 39.6 6.4 102 200-306 200-329 (342)
282 3k1w_A Renin; protease, altern 78.7 4.2 0.00014 38.7 7.2 99 201-306 208-338 (341)
283 1ip9_A BEM1 protein; ubiquitin 78.5 3.8 0.00013 31.3 5.3 44 1-47 13-57 (85)
284 3hm6_X Plexin-B1; structural g 77.2 7.4 0.00025 40.4 8.7 63 11-73 274-362 (644)
285 2lnm_A Protein TIC 40, chlorop 76.9 2.1 7.2E-05 30.7 3.4 26 94-121 2-27 (62)
286 1t6e_X Xylanase inhibitor; two 76.4 5.1 0.00017 39.0 7.2 27 280-306 345-371 (381)
287 2ekf_A Ancient ubiquitous prot 76.1 9.2 0.00032 27.3 6.5 41 369-410 10-52 (61)
288 1oai_A Nuclear RNA export fact 74.5 5 0.00017 28.5 4.8 37 371-407 6-43 (59)
289 2ejs_A Autocrine motility fact 72.3 10 0.00035 26.8 5.9 41 369-410 10-52 (58)
290 1wgk_A Riken cDNA 2900073H19 p 72.2 17 0.00056 29.3 8.1 69 1-71 12-103 (114)
291 1fm0_D Molybdopterin convertin 71.7 8.8 0.0003 28.3 6.0 55 11-71 17-76 (81)
292 1vdl_A Ubiquitin carboxyl-term 71.7 4.3 0.00015 30.1 3.9 38 372-409 24-63 (80)
293 2q5w_D Molybdopterin convertin 71.6 5.9 0.0002 29.0 4.9 55 11-71 16-72 (77)
294 2qjl_A URM1, ubiquitin-related 71.3 23 0.00079 27.3 8.6 68 1-71 2-94 (99)
295 2kmc_A Fermitin family homolog 71.1 34 0.0012 26.8 9.1 71 2-72 21-99 (102)
296 3ivf_A Talin-1; FERM domain, c 70.9 16 0.00055 35.3 9.3 74 2-75 87-170 (371)
297 2l52_A Methanosarcina acetivor 70.1 18 0.00062 28.0 7.7 67 1-71 4-94 (99)
298 2cu3_A Unknown function protei 69.7 8.8 0.0003 27.2 5.3 55 9-71 5-59 (64)
299 4dbg_B Ring finger protein 31; 69.7 3.7 0.00013 35.1 3.7 25 384-408 75-99 (162)
300 2k9x_A Tburm1, uncharacterized 69.3 1.9 6.5E-05 34.7 1.7 69 1-71 5-97 (110)
301 3vla_A EDGP; extracellular, in 69.0 13 0.00045 36.6 8.3 27 280-306 371-397 (413)
302 3vf3_A Beta-secretase 1; struc 68.5 6.5 0.00022 38.4 5.9 28 279-306 345-372 (402)
303 3ig3_A Plxna3 protein; plexin 68.4 18 0.00061 37.5 9.0 64 10-73 246-335 (627)
304 2jp7_A MRNA export factor MEX6 67.1 5.5 0.00019 28.1 3.6 36 372-407 6-42 (57)
305 3e7l_A Transcriptional regulat 65.5 3.3 0.00011 29.4 2.2 24 384-407 19-42 (63)
306 3qa8_A MGC80376 protein; kinas 65.3 8.7 0.0003 40.7 6.3 64 9-72 320-393 (676)
307 1ef1_A Moesin; membrane, FERM 64.3 26 0.00089 32.4 9.0 66 1-67 2-73 (294)
308 3lpj_A Beta-secretase 1; alzhe 64.3 7.2 0.00025 38.9 5.3 28 279-306 391-418 (455)
309 1h4r_A Merlin; FERM, neurofibr 63.2 30 0.001 32.3 9.3 70 2-72 24-100 (314)
310 1rws_A Hypothetical protein PF 63.1 3 0.0001 31.0 1.7 48 14-70 24-71 (77)
311 3qij_A Protein 4.1; cytoskelet 62.5 27 0.00091 32.7 8.6 74 1-74 18-97 (296)
312 1qdm_A Prophytepsin; aspartic 62.4 31 0.0011 34.6 9.7 27 279-305 449-475 (478)
313 2ewy_A Beta-secretase 2; BACE2 62.3 5.8 0.0002 38.4 4.1 28 279-306 326-353 (383)
314 1wgy_A RAP guanine nucleotide 62.1 39 0.0013 26.7 8.1 68 5-72 14-86 (104)
315 4g3o_A E3 ubiquitin-protein li 61.6 17 0.00058 25.6 5.2 38 372-410 17-56 (58)
316 3k6g_A Telomeric repeat-bindin 60.9 13 0.00045 29.2 5.0 37 374-410 15-52 (111)
317 1umq_A Photosynthetic apparatu 60.6 4.3 0.00015 30.7 2.2 23 385-407 42-64 (81)
318 3hvz_A Uncharacterized protein 60.4 21 0.00071 26.6 6.0 62 2-72 7-68 (78)
319 2lnm_A Protein TIC 40, chlorop 60.1 23 0.00078 25.1 5.9 28 104-135 2-29 (62)
320 4eut_A Serine/threonine-protei 58.1 23 0.0008 34.0 7.7 52 10-61 321-374 (396)
321 2g1e_A Hypothetical protein TA 57.7 33 0.0011 25.5 6.9 56 15-71 19-85 (90)
322 2hj1_A Hypothetical protein; s 56.1 17 0.00059 28.3 5.1 56 11-71 26-84 (97)
323 2ns5_A Partitioning-defective 54.6 68 0.0023 24.3 8.4 68 1-70 3-80 (85)
324 2l9b_A MRNA 3'-END-processing 54.4 11 0.00038 30.1 3.7 25 97-121 62-86 (109)
325 3vla_A EDGP; extracellular, in 53.5 76 0.0026 31.0 10.6 27 195-221 20-48 (413)
326 2lva_A Ubiquitin carboxyl-term 58.4 2.8 9.7E-05 34.2 0.0 36 374-409 20-57 (129)
327 1q1o_A Cell division control p 53.2 14 0.00049 28.9 4.1 37 1-37 6-49 (98)
328 1cuk_A RUVA protein; DNA repai 53.1 16 0.00056 32.4 5.0 26 371-396 159-184 (203)
329 2ylm_A Ubiquitin carboxyl-term 52.1 12 0.00041 38.4 4.5 33 13-45 38-70 (530)
330 2dbs_A Hypothetical protein TT 51.2 31 0.001 25.6 5.3 43 154-212 35-78 (90)
331 3u52_E Phenol hydroxylase comp 51.1 51 0.0017 26.6 7.0 58 13-70 40-107 (119)
332 1ufz_A Hypothetical protein BA 50.8 18 0.00062 27.4 4.1 34 376-409 38-74 (83)
333 2ztd_A Holliday junction ATP-d 50.7 21 0.00072 32.0 5.4 26 371-396 163-188 (212)
334 1wgr_A Growth factor receptor- 50.6 26 0.0009 27.5 5.3 71 3-73 12-93 (100)
335 2i1j_A Moesin; FERM, coiled-co 50.5 43 0.0015 34.6 8.5 65 2-67 6-76 (575)
336 2inc_C TOUB protein; DIIRON, 4 49.6 81 0.0028 23.8 8.0 58 13-70 15-80 (83)
337 3ge3_C Toluene-4-monooxygenase 43.6 98 0.0034 23.3 7.1 58 13-70 17-81 (84)
338 1ntc_A Protein (nitrogen regul 42.9 8 0.00027 29.5 1.1 24 384-407 51-74 (91)
339 1eto_A FIS, factor for inversi 42.3 13 0.00043 29.1 2.2 24 384-407 58-81 (98)
340 1g2h_A Transcriptional regulat 42.0 12 0.00042 26.2 2.0 23 384-407 21-43 (61)
341 1b5f_A Protein (cardosin A); h 41.7 17 0.00059 32.6 3.4 29 201-229 197-232 (239)
342 3h9d_A ATG8, microtubule-assoc 39.9 37 0.0013 27.5 4.7 57 15-71 52-112 (119)
343 2eel_A Cell death activator CI 38.2 84 0.0029 24.2 6.2 49 21-71 28-78 (91)
344 2ylm_A Ubiquitin carboxyl-term 38.1 23 0.0008 36.2 4.1 59 15-73 151-218 (530)
345 1f2r_I Inhibitor of caspase-ac 37.7 61 0.0021 25.4 5.5 49 21-71 37-89 (100)
346 3m95_A Autophagy related prote 35.4 41 0.0014 27.5 4.4 58 14-71 56-117 (125)
347 1jkg_B TAP; NTF2-like domain, 34.4 12 0.0004 34.5 1.0 36 372-407 198-234 (250)
348 1t6e_X Xylanase inhibitor; two 33.8 1.1E+02 0.0037 29.3 8.0 25 195-222 14-38 (381)
349 2l3n_A DNA-binding protein RAP 33.8 84 0.0029 23.3 5.3 39 371-409 13-52 (104)
350 2dhz_A RAP guanine nucleotide 32.4 96 0.0033 25.1 6.0 64 7-72 16-92 (120)
351 3tuf_A Stage III sporulation p 31.8 2.5E+02 0.0087 24.6 9.1 59 146-214 98-164 (197)
352 2kna_A Baculoviral IAP repeat- 31.7 27 0.00093 27.5 2.6 26 375-400 30-59 (104)
353 2r2q_A Gamma-aminobutyric acid 31.5 71 0.0024 25.3 5.1 57 14-70 47-107 (110)
354 4gmv_A RAS-associated and plec 30.8 1.7E+02 0.0059 27.1 8.5 69 3-71 34-113 (281)
355 3r8s_T 50S ribosomal protein L 30.6 1E+02 0.0036 23.6 5.8 41 10-50 27-68 (93)
356 1pqs_A Cell division control p 30.6 50 0.0017 24.5 3.8 36 11-46 2-42 (77)
357 1ixr_A Holliday junction DNA h 30.1 11 0.00037 33.3 0.0 25 372-396 146-170 (191)
358 1nri_A Hypothetical protein HI 29.8 16 0.00055 34.4 1.2 38 373-410 245-283 (306)
359 1eo6_A GATE-16, golgi-associat 28.7 81 0.0028 25.3 5.1 59 14-72 48-110 (117)
360 3au4_A Myosin-X; protein-prote 28.6 93 0.0032 31.6 6.8 44 2-45 218-263 (555)
361 2llw_A Heat shock protein STI1 28.5 63 0.0022 23.6 3.9 13 98-110 23-35 (71)
362 3rui_B Autophagy-related prote 28.5 66 0.0023 25.9 4.5 58 14-71 50-111 (118)
363 2lgx_A Fermitin family homolog 28.0 32 0.0011 27.4 2.3 61 11-71 36-101 (112)
364 1v8c_A MOAD related protein; r 27.1 1.4E+02 0.0048 25.4 6.6 56 14-71 17-82 (168)
365 2g18_A Phycocyanobilin:ferredo 26.0 75 0.0026 29.1 4.9 46 253-298 76-126 (253)
366 2c7h_A RBBP6, retinoblastoma-b 24.9 1.5E+02 0.005 22.5 5.5 41 3-43 9-51 (86)
367 1pgy_A SWA2P; UBA, ubiquitin, 24.7 28 0.00096 23.0 1.2 19 373-391 8-26 (47)
368 2zjd_A Microtubule-associated 24.6 97 0.0033 25.4 4.9 56 14-70 56-117 (130)
369 2nvu_B Maltose binding protein 24.5 93 0.0032 33.2 6.1 59 13-71 714-790 (805)
370 2w84_A Peroxisomal membrane pr 24.3 1.1E+02 0.0038 22.3 4.5 32 369-400 32-63 (70)
371 1b5f_B Protein (cardosin A); h 24.2 47 0.0016 24.6 2.7 28 278-305 57-84 (87)
372 3tve_T 50S ribosomal protein L 23.8 1.4E+02 0.0048 22.8 5.4 40 10-49 21-61 (92)
373 3pvl_A Myosin VIIA isoform 1; 23.7 88 0.003 32.8 5.6 45 1-45 264-309 (655)
374 4gdk_A Ubiquitin-like protein 22.7 1.3E+02 0.0046 22.8 5.1 57 13-71 22-84 (91)
375 3fe3_A MAP/microtubule affinit 22.7 1.5E+02 0.0053 27.3 6.7 39 371-409 288-326 (328)
376 4fp9_B Mterf domain-containing 22.2 64 0.0022 30.9 3.8 27 371-397 45-71 (335)
377 2x9o_A 15,16- dihydrobiliverdi 21.8 1.2E+02 0.004 27.6 5.4 45 254-298 59-109 (244)
378 3lay_A Zinc resistance-associa 21.6 3.8E+02 0.013 22.9 9.6 47 144-190 94-148 (175)
379 1j0g_A Hypothetical protein 18 20.7 2.2E+02 0.0074 21.3 5.5 60 13-72 26-86 (92)
380 2v1y_A Phosphatidylinositol-4, 20.6 1.3E+02 0.0046 23.8 4.7 65 6-71 25-103 (108)
381 3w1s_C Ubiquitin-like protein 20.1 2.1E+02 0.0071 21.8 5.6 55 14-72 26-85 (91)
No 1
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-36 Score=261.60 Aligned_cols=136 Identities=53% Similarity=0.942 Sum_probs=119.9
Q ss_pred HhCCccccceeEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCCcceeeeEEEEEeEEEcC
Q 015264 185 EHNPEAFARVVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGN 264 (410)
Q Consensus 185 e~~Pe~f~~~~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~ 264 (410)
--.||.|+++.|+|++|+|||++++|||||||++|+||.+||+||||.++.++++.+.+.|+|+.++.|+++.++|+||+
T Consensus 13 ~~~~~~~~~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~ 92 (148)
T 3s8i_A 13 GLVPRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEG 92 (148)
T ss_dssp ---------CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETT
T ss_pred CcCceeccccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECC
Confidence 34799999999999999999999999999999999999999999999988888888999999999999999999999999
Q ss_pred EEEEEEEEEecCCCCceeeechhhhhcceEEEccCCEEEECCcceeecCcCCCCCC
Q 015264 265 VFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIP 320 (410)
Q Consensus 265 ~~~~~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~~~~~~pfl~~~ei~ 320 (410)
..++|+|.|++..++|+|||||||++++|+|||++++|+|++.+.++|||+|+|+|
T Consensus 93 ~~~~~~~~Vle~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~~~~~~pfl~~~~~~ 148 (148)
T 3s8i_A 93 DFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTGTQTYFLPEGELP 148 (148)
T ss_dssp EEEEEEEEEETTCSSSEEECHHHHHHTTCEEETTTTEEECTTTCCEEECCCGGGCC
T ss_pred EEEEEEEEEeCCCCcCeeccHHHHHhCCEEEEcCCCEEEEccCCeEEeecCcccCc
Confidence 99999999999989999999999999999999999999999876789999999997
No 2
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-35 Score=256.42 Aligned_cols=148 Identities=50% Similarity=0.898 Sum_probs=108.4
Q ss_pred HHHHhHHHHHHHHHHhCCccccceeEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCCcce
Q 015264 171 IRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSE 250 (410)
Q Consensus 171 ir~~~i~~n~~~A~e~~Pe~f~~~~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g~~~ 250 (410)
|||++|+|||+.|||++||.|.+..|+|++|+|||++++|||||||++|+||.++|++|||....+.++.+.+.|+|...
T Consensus 1 ~~~~~i~~~~~~a~e~~p~~~~~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~ 80 (148)
T 2i1a_A 1 MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGK 80 (148)
T ss_dssp ----------------------CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC----------
T ss_pred CcHHHHHHHHHhhhhhCchhhcccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999998777777776788888777
Q ss_pred eeeEEEEEeEEEcCEEEEEEEEEecCCCCceeeechhhhhcceEEEccCCEEEECCcceeecCcCCCCCCC
Q 015264 251 ILGRIHVAPIKIGNVFYPCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPS 321 (410)
Q Consensus 251 ~~g~i~~~~l~ig~~~~~~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~~~~~~pfl~~~ei~~ 321 (410)
..|+++...++||+..++++|.|++ .++|+|||+|||+++++.||+++++|+|.+ .++||++++|+|+
T Consensus 81 ~~~~~~~~~i~ig~~~~~~~~~vl~-~~~d~iLG~d~L~~~~~~ID~~~~~l~l~~--~~~~f~~~~~~~~ 148 (148)
T 2i1a_A 81 IIGRIHQAQVKIETQYIPCSFTVLD-TDIDVLIGLDMLKRHLACVDLKENVLRIAE--VETSFLSEAEIPK 148 (148)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEC-SSCSEEECHHHHHHTTCEEETTTTEEEETT--EEEECCCTTTCC-
T ss_pred cccEEEEEEEEECCEEeceeEEEec-CCCCeEecHHHHhhCCEEEECCCCEEEEcc--EEEecCChhhCCC
Confidence 8999999999999999999999999 678999999999999999999999999986 5799999999985
No 3
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.88 E-value=4.1e-22 Score=197.68 Aligned_cols=73 Identities=25% Similarity=0.519 Sum_probs=68.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHH---HhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeE-EEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEV---ETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLV-MMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~---~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i-~l~~~~ 73 (410)
|+|+||+.+|++|.|+|++++||.+||++|+. +.|+|+++|||+|+||+|+|+++|++|||++|++| ||+.+.
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 89999999999999999999999999999999 56799999999999999999999999999999998 666544
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.75 E-value=3.9e-18 Score=135.58 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=68.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEE
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~ 70 (410)
|+|+||++.|+++.+++++++||.+||++|+++.|+|+++|||+|+|++|+|+.||++|+|++|++|+|.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999985
No 5
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=1.6e-17 Score=131.11 Aligned_cols=72 Identities=18% Similarity=0.280 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCee-cCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGRE-MNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~-L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.++|++++||.+||++|+..+|+|+++|||+|+|++ |+|+.+|++|||++|++|+|+.+
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 8999999999999999999999999999999999999999999999999 99999999999999999999864
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=128.36 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+||+.+|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~r 76 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 76 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999854
No 7
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.4e-17 Score=134.87 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
|+|+||++.|+++.++|++++||.+||++|+.+.|+|+++|||+|.||+|+|+.||++|||++|++|||+.
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999963
No 8
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.9e-17 Score=136.55 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~~ 75 (410)
|+|+||+.+|+.+.++|++++||.+||++|+..+|+|+++|||+|+|++|+|+.+|++|||++|++|+|+.+.+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999966444
No 9
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=9.9e-17 Score=129.50 Aligned_cols=74 Identities=28% Similarity=0.577 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH---hCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVE---TQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~---~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
|+|+|++.+|+.+.++|++++||.+||++|+.. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+....
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999986543
No 10
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.71 E-value=4.2e-17 Score=130.12 Aligned_cols=74 Identities=24% Similarity=0.442 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~~ 75 (410)
|+|+||+.+|+.+.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+.+|++||| +|++|||+.+..+
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999 8999999977554
No 11
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.70 E-value=5.5e-17 Score=129.14 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECB
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 12
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.70 E-value=7.9e-17 Score=126.91 Aligned_cols=75 Identities=23% Similarity=0.485 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHH---hCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVE---TQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~---~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~~ 75 (410)
|+|+|++.+|+.+.++|++++||.+||++|+.. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+.+.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~~ 83 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 83 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC---
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCCC
Confidence 789999999999999999999999999999998 899999999999999999999999999999999999976543
No 13
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.8e-17 Score=129.65 Aligned_cols=73 Identities=21% Similarity=0.346 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEeC--CCCCHHHHHHHH-HHHhCCCcCCeEEEeCCeecCCCCcccccCC-CCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVD--PHETVENVKALL-EVETQVPLQQQQLLYNGREMNNAEKLSALGV-KDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~--~~~TV~~LK~~I-~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI-~~g~~i~l~~~~ 73 (410)
|+|+||+.+|++++++|+ +++||.+||++| +...|+|+++|||+|+||+|+|+.||++|+| ++|++|+|+-++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999888755 999999999999 9999999999999999999999999999999 699999998654
No 14
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.2e-16 Score=123.90 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEE-EEE-eCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQII-SLD-VDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~-~ie-v~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+|+.+ .++ |++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+.
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999885 899 999999999999999999999999999999999999999999999999999998654
No 15
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.68 E-value=1e-16 Score=128.26 Aligned_cols=72 Identities=32% Similarity=0.565 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+||+.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 89 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 89 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEe
Confidence 799999999999999999999999999999999999999999999999999999999999999999999854
No 16
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.68 E-value=1.4e-16 Score=122.94 Aligned_cols=72 Identities=19% Similarity=0.445 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++ +|+.+.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6899999 89999999999999999999999999999999999999999999999999999999999998754
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.68 E-value=1.8e-16 Score=121.73 Aligned_cols=72 Identities=29% Similarity=0.517 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~ 72 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLA 72 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 18
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.67 E-value=1.5e-16 Score=126.32 Aligned_cols=70 Identities=24% Similarity=0.451 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
|+|+||+.+|+.+.++|++++||.+||++|+.++|+|+++|||+|+|+.|+|+.+|++||| +|++|||+.
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~ 87 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVE 87 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999 899999974
No 19
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.67 E-value=1.2e-16 Score=129.51 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=68.1
Q ss_pred CEEEEEeCCCCEEEE--EeCCCCCHHHHHHHH-HHHhCCCcCCeEEEeCCeecCCCCcccccCC-CCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISL--DVDPHETVENVKALL-EVETQVPLQQQQLLYNGREMNNAEKLSALGV-KDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~i--ev~~~~TV~~LK~~I-~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI-~~g~~i~l~~~~ 73 (410)
|+|+||+.+|+.|.+ +|++++||.+||++| +...|+|+++|||+|+|++|+|+.+|++||| ++|++|+|+.+.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 567999999999999 8888999999999999999999999999999 999999999764
No 20
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.67 E-value=3e-16 Score=120.45 Aligned_cols=73 Identities=32% Similarity=0.566 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+|+.+.+++++++||.+||+.|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++||++.+.
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998653
No 21
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.66 E-value=2e-16 Score=125.31 Aligned_cols=72 Identities=29% Similarity=0.520 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 84 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLR 84 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999754
No 22
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.66 E-value=3.8e-16 Score=125.97 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r 73 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 73 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999954
No 23
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.1e-16 Score=127.30 Aligned_cols=72 Identities=28% Similarity=0.540 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+||+.+|+.+.++|++++||.+||++|+..+|+|+++|||+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~r 94 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 94 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECB
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 24
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.8e-16 Score=123.60 Aligned_cols=73 Identities=30% Similarity=0.555 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+|+++.++|++++||.+||++|+..+++|+++|+|+|+|+.|+|+.+|++|+|++|++|||+.+.
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl 76 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKL 76 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEec
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998653
No 25
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2.3e-16 Score=127.69 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=66.8
Q ss_pred EEEEEeCC----CCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCC
Q 015264 2 RITVMTAD----EQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 2 ~I~vk~~~----g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
.|.|++.+ ++.+.++|++++||.+||++|+.++|+|+++|+|||+||+|+|+.||++|||++|++|+|+.-.+
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~lrg 93 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLELKQ 93 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEECCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEEECC
Confidence 36677776 77899999999999999999999999999999999999999999999999999999998886443
No 26
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=121.96 Aligned_cols=72 Identities=28% Similarity=0.473 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 79 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVK 79 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999854
No 27
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=4.2e-16 Score=123.99 Aligned_cols=72 Identities=22% Similarity=0.529 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|+.+
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 28
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-16 Score=126.16 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+.+|++|||++|++|+|+.+.
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~ 77 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRL 77 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998654
No 29
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.65 E-value=2.4e-16 Score=122.55 Aligned_cols=72 Identities=18% Similarity=0.419 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.++|++++||.+||+.|+.+.|+|+++|+|+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~ 75 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 75 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999999864
No 30
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4.6e-16 Score=122.24 Aligned_cols=72 Identities=29% Similarity=0.553 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.+++++++||.+||++|+..+++|+++|+|+|+|+.|+|+.+|++|+|++|++|||+.+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r 75 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLR 75 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999854
No 31
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=7.8e-16 Score=122.37 Aligned_cols=73 Identities=25% Similarity=0.369 Sum_probs=69.5
Q ss_pred CEEEEEeCCC-CEEEE-EeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADE-QIISL-DVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g-~~~~i-ev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+| +.+.+ +|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 82 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRP 82 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeC
Confidence 7899999999 79999 5999999999999999999999999999999999999999999999999999998654
No 32
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=3.4e-16 Score=128.92 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=71.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~~ 75 (410)
|+|+|++.+|+.+.++|++++||.+||.+|+..+|+|+++|||+|+|+.|+|+.+|++|||++|++|||+.+...
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999975443
No 33
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.9e-16 Score=122.94 Aligned_cols=73 Identities=21% Similarity=0.399 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+|+.+.++|++++||.+||++|+..+++|+++|+|+|+|+.|+|+.+|++|+|++|++|||+.+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKK 80 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECS
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEec
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998654
No 34
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=5.5e-16 Score=126.79 Aligned_cols=74 Identities=30% Similarity=0.507 Sum_probs=68.4
Q ss_pred CEEEEEeCCC----CEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCC-CcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADE----QIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNA-EKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g----~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~-~tL~~~gI~~g~~i~l~~~~~ 74 (410)
|+|+|++.++ +++.++|++++||.+||++|+.++|+|+++|+|+|+|++|+|+ .||++|||++|++|||+.+..
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~ 86 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDN 86 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCC
Confidence 7899999754 7899999999999999999999999999999999999999988 799999999999999986543
No 35
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=8e-16 Score=123.56 Aligned_cols=73 Identities=21% Similarity=0.299 Sum_probs=68.3
Q ss_pred CEEEEEeCCCC--EEEEEeCCCCCHHHHHHHHHHHh--CCCcCCeEEEeCCeecCCCCccccc--CCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQ--IISLDVDPHETVENVKALLEVET--QVPLQQQQLLYNGREMNNAEKLSAL--GVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~--~~~iev~~~~TV~~LK~~I~~~~--gip~~~q~Li~~Gk~L~d~~tL~~~--gI~~g~~i~l~~~~ 73 (410)
|+|+||+.+++ .+.+++++++||.+||++|+..+ ++|+++|||+|+|++|+|+.+|++| +|++|++|||+.+.
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~ 86 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNV 86 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCC
Confidence 78999999888 57778889999999999999999 9999999999999999999999999 99999999999653
No 36
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.63 E-value=1.4e-15 Score=123.34 Aligned_cols=73 Identities=32% Similarity=0.570 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+|+.+.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~ 73 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998654
No 37
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.63 E-value=5.9e-16 Score=125.42 Aligned_cols=72 Identities=18% Similarity=0.419 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.++|.+++||.+||++|+.+.|+|+++|||+|+|+.|+|+.||++|+|++|++|||+.+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~ 93 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 93 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEES
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
No 38
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.63 E-value=8e-16 Score=123.95 Aligned_cols=72 Identities=22% Similarity=0.461 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCC-CcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNA-EKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~-~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+||+.+| ++.++|++++||.+||++|+..+|+|+++|+|+|+||+|+|+ .||++|||++|++|+|+.+.
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~ 88 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKS 88 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECC
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeC
Confidence 6899999877 899999999999999999999999999999999999999999 99999999999999998654
No 39
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=124.02 Aligned_cols=73 Identities=22% Similarity=0.340 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
|+|+|++. |+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+..
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 68999998 88999999999999999999999999999999999999999999999999999999999987654
No 40
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=1.1e-15 Score=124.58 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=69.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~~ 75 (410)
|+|+|++.+|+ +.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|+.+..+
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 78999998886 789999999999999999999999999999999999999999999999999999999976544
No 41
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=2.2e-15 Score=123.96 Aligned_cols=73 Identities=21% Similarity=0.352 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
|+|+|++.+|+ +.++|++++||.+||++|+..+|+|+++|||+|+|+.|+|+.+|++|||++|++|||+.+..
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQ 90 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999998876 78999999999999999999999999999999999999999999999999999999996543
No 42
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=4.2e-16 Score=127.61 Aligned_cols=73 Identities=21% Similarity=0.355 Sum_probs=67.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCc---------------CCeEEEeCCeecC-CCCcccccCCCCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPL---------------QQQQLLYNGREMN-NAEKLSALGVKDE 64 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~---------------~~q~Li~~Gk~L~-d~~tL~~~gI~~g 64 (410)
|+|+|++.+|+.+.|+|++++||.+||+.|+..+++|+ ++|+|+|+|++|. |++||++|||++|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 89999999999999999999999999999999999988 3579999999997 5699999999999
Q ss_pred CeEEEEecC
Q 015264 65 DLVMMVSNA 73 (410)
Q Consensus 65 ~~i~l~~~~ 73 (410)
++||++..-
T Consensus 88 ~~l~lv~~l 96 (105)
T 1v2y_A 88 DEVSFIKKL 96 (105)
T ss_dssp EEEEEEECS
T ss_pred CEEEEEehh
Confidence 999999653
No 43
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.61 E-value=2e-15 Score=125.38 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.++|++++||.+||.+|+..+|+|+++|||+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999865
No 44
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=125.28 Aligned_cols=73 Identities=21% Similarity=0.284 Sum_probs=66.9
Q ss_pred EEEEE-eCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCC
Q 015264 2 RITVM-TADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 2 ~I~vk-~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
.|+|+ +..++.+.++++++.||.+||+.++.++++|+++|+|+|+||+|+|+.||++|||++|.+|||+.+..
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 45555 55688999999999999999999999999999999999999999999999999999999999997643
No 45
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=1.1e-15 Score=123.35 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=69.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
|+|+|++. |+.+.++|++++||.+||++|+..+++|+++|+|+|+|+.|+|+.||++|||++|++|||+.+..
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~ 90 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSH 90 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCS
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCC
Confidence 78999998 99999999999999999999999999999999999999999999999999999999999986543
No 46
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=121.43 Aligned_cols=70 Identities=20% Similarity=0.332 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++ |+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~r 89 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGR 89 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEe
Confidence 7899998 899999999999999999999999999999999999999999999999999999999999854
No 47
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.60 E-value=1.8e-15 Score=120.88 Aligned_cols=73 Identities=30% Similarity=0.373 Sum_probs=69.3
Q ss_pred CEEEEEeCCCCEEEE-EeCCCCCHHHHHHHHHHHhCCCcCCeEEE---eCCeecCCCCcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADEQIISL-DVDPHETVENVKALLEVETQVPLQQQQLL---YNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g~~~~i-ev~~~~TV~~LK~~I~~~~gip~~~q~Li---~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
|+|+|++ +|+.+.+ +|+++.||.+||++|+..+|+|+++|||+ |+|++|+|+.+|++|||++|++|||+..+.
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~ 84 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE 84 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCc
Confidence 7899998 7899999 99999999999999999999999999999 999999999999999999999999997654
No 48
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.40 E-value=5.6e-17 Score=125.02 Aligned_cols=72 Identities=18% Similarity=0.357 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.+++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999754
No 49
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=3.2e-15 Score=123.26 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=69.1
Q ss_pred CEEEEEeCCC---CEEEEEeCC---------CCCHHHHHHHHHHHh--CCCcCC-eEEEeCCeecCCCCcccccCCCCCC
Q 015264 1 MRITVMTADE---QIISLDVDP---------HETVENVKALLEVET--QVPLQQ-QQLLYNGREMNNAEKLSALGVKDED 65 (410)
Q Consensus 1 M~I~vk~~~g---~~~~iev~~---------~~TV~~LK~~I~~~~--gip~~~-q~Li~~Gk~L~d~~tL~~~gI~~g~ 65 (410)
|+|+||+.++ +.+.+++++ ++||.+||++|+..+ |+|+++ |||+|+|++|+|+.+|++|||++|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999888 789999554 599999999999999 999999 9999999999999999999999999
Q ss_pred eEEEEecCCC
Q 015264 66 LVMMVSNAAS 75 (410)
Q Consensus 66 ~i~l~~~~~~ 75 (410)
+|||+.+..+
T Consensus 93 ~i~lv~~~~~ 102 (107)
T 1x1m_A 93 TVHVLRKSWS 102 (107)
T ss_dssp EEEEEESSCC
T ss_pred EEEEEeCCCC
Confidence 9999977654
No 50
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=123.93 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=64.3
Q ss_pred CEEEEEeCCCC--EEEEEeCCCCCHHHHHHHHHHHh-CCC-cCCeEEEeCCeecCCCCccccc--CCCCCCeEEEE
Q 015264 1 MRITVMTADEQ--IISLDVDPHETVENVKALLEVET-QVP-LQQQQLLYNGREMNNAEKLSAL--GVKDEDLVMMV 70 (410)
Q Consensus 1 M~I~vk~~~g~--~~~iev~~~~TV~~LK~~I~~~~-gip-~~~q~Li~~Gk~L~d~~tL~~~--gI~~g~~i~l~ 70 (410)
|+|+||+.+|+ .+.++|++++||.+||++|+.++ |+| +++|||+|+||+|+|+.||++| +|++|++|||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 68999999888 57899999999999999999974 655 5999999999999999999999 99999999985
No 51
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=4.1e-15 Score=119.14 Aligned_cols=74 Identities=27% Similarity=0.474 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCEEEEEeCCC-----CCHHHHHHHHHHHhCCCcCCeEEEeCCeecCC-CCcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADEQIISLDVDPH-----ETVENVKALLEVETQVPLQQQQLLYNGREMNN-AEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~-----~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d-~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
|+|+|++ .|+.+.++|+++ .||.+||++|+..+|+|+++|||+|+|+.|+| +.+|++|||++|++|||+.++.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 6899998 588999999995 99999999999999999999999999999998 5689999999999999997654
Q ss_pred C
Q 015264 75 S 75 (410)
Q Consensus 75 ~ 75 (410)
+
T Consensus 87 ~ 87 (92)
T 1wxv_A 87 S 87 (92)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=4.4e-15 Score=123.72 Aligned_cols=75 Identities=13% Similarity=0.256 Sum_probs=67.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHH------HhCC--CcCCeEEEeCCeecCCCCcccccCCCCC--CeEEEE
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEV------ETQV--PLQQQQLLYNGREMNNAEKLSALGVKDE--DLVMMV 70 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~------~~gi--p~~~q~Li~~Gk~L~d~~tL~~~gI~~g--~~i~l~ 70 (410)
|+|+||+.+|++++++|++++||.+||++|+. ..++ |+++|||||.||+|+|+.||++|+|+.+ .+|||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 5565 6999999999999999999999999877 578888
Q ss_pred ecCCC
Q 015264 71 SNAAS 75 (410)
Q Consensus 71 ~~~~~ 75 (410)
.+...
T Consensus 97 lr~~~ 101 (116)
T 1wgh_A 97 ARETL 101 (116)
T ss_dssp ECSSC
T ss_pred ccCCC
Confidence 66544
No 53
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=9e-16 Score=125.31 Aligned_cols=72 Identities=19% Similarity=0.445 Sum_probs=67.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++ +|+.+.++|++++||.+||++|+..+|+|+++|||+|+|+.|+|+.+|++|||++|++|+|+.+.
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 4678887 89999999999999999999999999999999999999999999999999999999999998653
No 54
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.7e-15 Score=120.49 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=67.7
Q ss_pred CEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADEQII-SLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g~~~-~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
|+|+|++ .|+.+ .++|++++||.+||++|+..+|+|+++|||+|+|++|+|+ +|++|||++|++|||+..+.
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 6899997 68899 6999999999999999999999999999999999999999 99999999999999997654
No 55
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=3.6e-15 Score=120.19 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCC-CcccccCCCCCCeEEEEecCCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNA-EKLSALGVKDEDLVMMVSNAAS 75 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~-~tL~~~gI~~g~~i~l~~~~~~ 75 (410)
|+|+|++.+|+.+.++|++++||.+||++|+..+ +++|||+|+|+.|+|+ .+|++|||++|++|||+.+.+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 7899999999999999999999999999999987 8999999999999999 9999999999999999966544
No 56
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.59 E-value=2.2e-15 Score=125.35 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=67.2
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCC-------CCCeEEEEec
Q 015264 1 MRITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVK-------DEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~-------~g~~i~l~~~ 72 (410)
|.++|+...++ ++.++|++++||.+||++|+.+.|||+++|||+|+||+|+|++||++|||+ .+++|||+-+
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 77888877776 588999999999999999999999999999999999999999999999999 7999999866
No 57
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=4.6e-15 Score=125.69 Aligned_cols=73 Identities=19% Similarity=0.319 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
|+|+|++. |+.+.++|++++||.+||.+|+..+|+|+++|||+|+|++|+|+.||++|||++|++|+|+.+..
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~ 105 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRD 105 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC--
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccC
Confidence 78999998 99999999999999999999999999999999999999999999999999999999999996543
No 58
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.58 E-value=3.1e-15 Score=124.00 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=68.2
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCC-------CCeEEEEec
Q 015264 1 MRITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKD-------EDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~-------g~~i~l~~~ 72 (410)
|.|+|+...++ ++.+++.+++||.+||++|+...|+|+++|||+|+||+|+|++||++|||++ +++|||+-+
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 78888877776 6889999999999999999999999999999999999999999999999999 999999965
Q ss_pred C
Q 015264 73 A 73 (410)
Q Consensus 73 ~ 73 (410)
.
T Consensus 81 ~ 81 (118)
T 4ajy_B 81 A 81 (118)
T ss_dssp C
T ss_pred c
Confidence 4
No 59
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.58 E-value=6.8e-15 Score=131.14 Aligned_cols=72 Identities=28% Similarity=0.540 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+||+.+|+.+.++|++++||.+||++|+..+|+|+++|||+|+|++|+|+.+|++|||++|++|||+.+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlr 72 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999954
No 60
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.57 E-value=9.2e-15 Score=121.33 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~r 107 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 107 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999865
No 61
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=8.8e-15 Score=115.59 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=65.6
Q ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 3 ITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 3 I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
+++++.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+.+|++|||++|++|+|+.++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 34555689999999999999999999999999999999999999999999999999999999999998654
No 62
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.56 E-value=9.9e-15 Score=119.05 Aligned_cols=72 Identities=25% Similarity=0.296 Sum_probs=66.8
Q ss_pred CEEEEEeCCC--CEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCC-CCCCeEEEEec
Q 015264 1 MRITVMTADE--QIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGV-KDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g--~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI-~~g~~i~l~~~ 72 (410)
|+|+|+...+ ..++++|++++||.+||++|+.++|+|+++|||+|+|+.++|+.||++||| ++|+++||+--
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6789998764 679999999999999999999999999999999999999999999999999 59999999854
No 63
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.56 E-value=5.3e-15 Score=119.36 Aligned_cols=72 Identities=17% Similarity=0.272 Sum_probs=66.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
|+|+|+. +|+++.++|+++.||.+||++|+..+|+|+++|||+|+|++| |+.+|++|||++|++|||+..+.
T Consensus 18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSSC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEeccc
Confidence 5788886 688999999999999999999999999999999999999999 55699999999999999986653
No 64
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.56 E-value=8.7e-15 Score=123.58 Aligned_cols=75 Identities=13% Similarity=0.258 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHH------HhCC--CcCCeEEEeCCeecCCCCcccccCCCCCC--eEEEE
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEV------ETQV--PLQQQQLLYNGREMNNAEKLSALGVKDED--LVMMV 70 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~------~~gi--p~~~q~Li~~Gk~L~d~~tL~~~gI~~g~--~i~l~ 70 (410)
|+|+||+.+|++++++|++++||.+||++|+. +.|+ ++++|||||.||+|+|+.||++|+|+.|+ +|||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 67899999999999999999999999999998 6677 48999999999999999999999999887 67888
Q ss_pred ecCCC
Q 015264 71 SNAAS 75 (410)
Q Consensus 71 ~~~~~ 75 (410)
.+...
T Consensus 98 ~r~~~ 102 (125)
T 2gow_A 98 ARETL 102 (125)
T ss_dssp ECSCC
T ss_pred ecCCC
Confidence 65543
No 65
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=2.2e-14 Score=119.62 Aligned_cols=72 Identities=25% Similarity=0.491 Sum_probs=69.5
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
+|+|++.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+.
T Consensus 11 ~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~ 82 (114)
T 2kdi_A 11 QIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRL 82 (114)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECC
T ss_pred EEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 799999999999999999999999999999999999999999999999999999999999999999998654
No 66
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.54 E-value=1.6e-14 Score=127.27 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=69.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+++.++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+.||++|||++|++|||+.+
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~r 153 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLR 153 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999854
No 67
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.54 E-value=9.7e-15 Score=121.17 Aligned_cols=72 Identities=21% Similarity=0.302 Sum_probs=68.7
Q ss_pred CEEEEEeC---CCCEEEEEeCC-CCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTA---DEQIISLDVDP-HETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~---~g~~~~iev~~-~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++. +|+.+.++|++ ++||.+||++|+..+|+|+++|+|+|+|++|+|+.+|++|||++|++|||+.+
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 68999998 78999999998 99999999999999999999999999999999999999999999999999854
No 68
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.54 E-value=1.4e-14 Score=130.85 Aligned_cols=72 Identities=31% Similarity=0.547 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+++.++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+.+|++|||++|++|||+.+
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvlr 177 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 177 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 69
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.53 E-value=2.8e-14 Score=125.65 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEE-e-CCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL-Y-NGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li-~-~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+||+.+|+.+.++|++++||.+||++|+..+|+|+++|+|+ | +|+.|+|+.+|++|||++|++|||+.+.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccC
Confidence 79999999999999999999999999999999999999999999 9 8999999999999999999999999763
No 70
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.52 E-value=2.8e-14 Score=120.07 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=65.6
Q ss_pred CEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHH-----HHhCCCc--CCeEEEeCCeecCCCCcccccCCCCC------Ce
Q 015264 1 MRITVMTADEQII-SLDVDPHETVENVKALLE-----VETQVPL--QQQQLLYNGREMNNAEKLSALGVKDE------DL 66 (410)
Q Consensus 1 M~I~vk~~~g~~~-~iev~~~~TV~~LK~~I~-----~~~gip~--~~q~Li~~Gk~L~d~~tL~~~gI~~g------~~ 66 (410)
|+|+||+.+|+.+ .+++++++||.+||++|+ ...|+|+ ++|||||.||+|+|+.||++|+|+.| .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999888 799999999999999994 4567886 89999999999999999999999998 57
Q ss_pred EEEEecC
Q 015264 67 VMMVSNA 73 (410)
Q Consensus 67 i~l~~~~ 73 (410)
+||+.+.
T Consensus 97 mhlVlrl 103 (126)
T 1se9_A 97 MHVIIQA 103 (126)
T ss_dssp EEEEECC
T ss_pred EEEEecc
Confidence 8888654
No 71
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=126.72 Aligned_cols=73 Identities=32% Similarity=0.570 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+|+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+.
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 93 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 93 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecc
Confidence 7999999999999999999999999999999999999999999999999999999999999999999998643
No 72
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.51 E-value=6.1e-14 Score=121.99 Aligned_cols=73 Identities=32% Similarity=0.570 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeec
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998764
No 73
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.51 E-value=1.1e-15 Score=130.23 Aligned_cols=72 Identities=28% Similarity=0.540 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+++.++|++++||.+||+.|+..+|+|+++|+|+|+|+.|+|+.||++|||++|++|||+.+
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~r 72 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (128)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999854
No 74
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=4.4e-14 Score=112.30 Aligned_cols=69 Identities=22% Similarity=0.368 Sum_probs=63.7
Q ss_pred CEEEEEeCCCCEE--EE-EeCCCCCHHHHHHHHHHH-hCCCcCCeEEEeC--CeecCCCCcccccCCCCCCeEEE
Q 015264 1 MRITVMTADEQII--SL-DVDPHETVENVKALLEVE-TQVPLQQQQLLYN--GREMNNAEKLSALGVKDEDLVMM 69 (410)
Q Consensus 1 M~I~vk~~~g~~~--~i-ev~~~~TV~~LK~~I~~~-~gip~~~q~Li~~--Gk~L~d~~tL~~~gI~~g~~i~l 69 (410)
|+|+|++..|+.+ .+ +|++++||.+||++|+.. .|+|+++|||+|. |++|+|+.||++|||++|++||+
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999987664 58 999999999999999995 7999999999976 99999999999999999999987
No 75
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.47 E-value=1.2e-13 Score=109.15 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=63.4
Q ss_pred EEEEEeC--CCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEe-------CCeecCCCCcccccCCCCCCeEEEEec
Q 015264 2 RITVMTA--DEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLY-------NGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 2 ~I~vk~~--~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~-------~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
+|.|... +.+.+.+.+++++||++||++|+..+|+|+++|||+| .|+.|+|+++|++|||++|++|||+..
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 4566644 3566788899999999999999999999999999997 488999999999999999999999965
Q ss_pred C
Q 015264 73 A 73 (410)
Q Consensus 73 ~ 73 (410)
.
T Consensus 84 ~ 84 (86)
T 4b6w_A 84 Q 84 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 76
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.47 E-value=3.7e-15 Score=130.30 Aligned_cols=71 Identities=28% Similarity=0.546 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
|+|+|++.+|+++.++|++++||.+||+.|+..+|+|+++|+|+|+|++|+|+.||++|||++|++|||+.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999983
No 77
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.47 E-value=9.8e-14 Score=115.81 Aligned_cols=72 Identities=17% Similarity=0.289 Sum_probs=66.3
Q ss_pred CEEEEEeCC----------CCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEE
Q 015264 1 MRITVMTAD----------EQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 1 M~I~vk~~~----------g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~ 70 (410)
++|+|++++ |+++.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 357777753 6789999999999999999999999999999999999999999999999999999999998
Q ss_pred ec
Q 015264 71 SN 72 (410)
Q Consensus 71 ~~ 72 (410)
.+
T Consensus 106 ~r 107 (115)
T 1we7_A 106 LK 107 (115)
T ss_dssp EC
T ss_pred EE
Confidence 54
No 78
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.47 E-value=1.4e-13 Score=110.84 Aligned_cols=70 Identities=19% Similarity=0.182 Sum_probs=62.6
Q ss_pred EEEEEeCCCC--EEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeC--Ce---ec-CCCCcccccCCCCCCeEEEEe
Q 015264 2 RITVMTADEQ--IISLDVDPHETVENVKALLEVETQVPLQQQQLLYN--GR---EM-NNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 2 ~I~vk~~~g~--~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~--Gk---~L-~d~~tL~~~gI~~g~~i~l~~ 71 (410)
.|+|++..++ .+++++++++||++||++|+..+|+|+++|||+|. |+ .| +|+++|++|||++|++|||+.
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 5788887664 78899999999999999999999999999999997 55 44 788999999999999999974
No 79
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.46 E-value=8e-14 Score=114.87 Aligned_cols=74 Identities=24% Similarity=0.390 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCEEEEEeC-CCCCHHHHHHHHHHHhCCCcCCeEEEeCCe-----------e----cCCCCcccccCCCCC
Q 015264 1 MRITVMTADEQIISLDVD-PHETVENVKALLEVETQVPLQQQQLLYNGR-----------E----MNNAEKLSALGVKDE 64 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~-~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk-----------~----L~d~~tL~~~gI~~g 64 (410)
|+|+||+.+|+. .|+|+ +++||.+||++|+..+++|+++|+|+|.|+ . ++|+.||++|||++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999998876 78999 999999999999999999999999999988 4 478899999999999
Q ss_pred CeEEEEecCCC
Q 015264 65 DLVMMVSNAAS 75 (410)
Q Consensus 65 ~~i~l~~~~~~ 75 (410)
++|||+.....
T Consensus 87 ~~L~l~~~~~~ 97 (107)
T 1wf9_A 87 SMVYLAYEGER 97 (107)
T ss_dssp CEEECCCSSCC
T ss_pred CEEEEEeCCCC
Confidence 99999976554
No 80
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.46 E-value=2.3e-13 Score=118.32 Aligned_cols=73 Identities=32% Similarity=0.570 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+|+.+.+++++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+.||++|||++|++|||+.+.
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEec
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998653
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=122.91 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|.|+|++.+|+++.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||++|++|||+.+
T Consensus 97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~r 168 (172)
T 3u30_A 97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 168 (172)
T ss_dssp EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-
T ss_pred ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEe
Confidence 578999999999999999999999999999999999999999999999999999999999999999999754
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=9.5e-14 Score=112.73 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=64.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEe--CCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLY--NGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~--~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|.++++..+|+.+.++|++++||.+||++|++++||||++|||+| .|+ |+|+.+|++|+|+.|++|||+-..
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 556666668999999999999999999999999999999999996 566 999999999999999999998543
No 83
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.43 E-value=2.6e-13 Score=109.63 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=62.7
Q ss_pred EEEEEeCCC--CEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCC---ee----cCCCCcccccCCCCCCeEEEEec
Q 015264 2 RITVMTADE--QIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG---RE----MNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 2 ~I~vk~~~g--~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~G---k~----L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
.|+|++... ..+++++++++||++||++|+..+|+|+++|||+|.| +. ++|+++|++|||++|++|||+..
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 577887654 4688999999999999999999999999999999988 33 47889999999999999999864
No 84
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.43 E-value=5.6e-14 Score=98.96 Aligned_cols=42 Identities=29% Similarity=0.638 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 369 GADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 369 ~~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
++.++++|++|++|||+|++|+.||++++||+++|++|||+|
T Consensus 5 ~~~~~~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 5 GSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp SHHHHHHHHHHHHTTCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred CccCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 456789999999999999999999999999999999999986
No 85
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.42 E-value=4.7e-13 Score=107.81 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=64.2
Q ss_pred EEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCC---ee----cCCCCcccccCCCCCCeEEEEecC
Q 015264 2 RITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG---RE----MNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 2 ~I~vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~G---k~----L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
.|+|++.... .+.+++++++||.+||++|+..+|+|+++|||+|.| +. ++|+++|++|||++|++|||+...
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~ 88 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHS 88 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCS
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECC
Confidence 5778886553 688999999999999999999999999999999976 53 578899999999999999998654
Q ss_pred CC
Q 015264 74 AS 75 (410)
Q Consensus 74 ~~ 75 (410)
+.
T Consensus 89 P~ 90 (95)
T 1v6e_A 89 GS 90 (95)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 86
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.41 E-value=2.3e-13 Score=93.29 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=38.0
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
.+|++|++|++|||+|++|++||++++||+++|++|||+|
T Consensus 3 p~e~~i~~L~~MGF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 3 PKSLAVEELSGMGFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 3689999999999999999999999999999999999986
No 87
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.39 E-value=1.1e-12 Score=99.62 Aligned_cols=42 Identities=33% Similarity=0.378 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 369 GADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 369 ~~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
....+++|++|++|||+|++|++||++++||+++|++|||+|
T Consensus 26 ~~~~ee~I~~L~eMGF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 26 VAASEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp SCCCHHHHHHHHTTTCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CcccHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 456799999999999999999999999999999999999975
No 88
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.39 E-value=7.2e-13 Score=127.94 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+||+.+|+.+.++|++++||.+||++|+..+|+|+++|||+|+|++|+|+.+|++|||++|++|||+.+
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlR 305 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 305 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEe
Confidence 789999999999999999999999999999999999999999999999999999999999999999999854
No 89
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.36 E-value=9.3e-13 Score=104.07 Aligned_cols=73 Identities=11% Similarity=0.226 Sum_probs=65.3
Q ss_pred CEEEEEeCCCCEEEEE-eCCCCCHHHHHHHHHHHhCCCcCCeEEEeC--CeecC---CCCcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADEQIISLD-VDPHETVENVKALLEVETQVPLQQQQLLYN--GREMN---NAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g~~~~ie-v~~~~TV~~LK~~I~~~~gip~~~q~Li~~--Gk~L~---d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
|+|+||+.+|+. .++ +++++||.+||+.|+.++|+|+++|+|+|+ +|.|. |+.+|++|||++|++|||.....
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~~ 79 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQT 79 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCSC
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCCC
Confidence 899999999965 477 999999999999999999999999999986 48874 57899999999999999986643
No 90
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.32 E-value=3.8e-12 Score=107.24 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=64.5
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCC---ee----cCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG---RE----MNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~G---k~----L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
+.|+|++..+. .+.+++++++||++||.+|+..+|+|+++|||+|.| +. ++|+.+|++|||++|++|||+..
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 35778876553 588999999999999999999999999999999977 43 47889999999999999999975
Q ss_pred CCC
Q 015264 73 AAS 75 (410)
Q Consensus 73 ~~~ 75 (410)
.+.
T Consensus 87 ~p~ 89 (122)
T 1t0y_A 87 TGG 89 (122)
T ss_dssp TTC
T ss_pred CCC
Confidence 533
No 91
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=99.29 E-value=5.2e-12 Score=89.94 Aligned_cols=42 Identities=33% Similarity=0.513 Sum_probs=39.0
Q ss_pred CCChHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 369 GADFEAKVAKLVELGF-GREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 369 ~~~~e~~i~~l~~mGf-~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
....+++|++|++||| +|+.|++||++++||+++|++|||+|
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 9 EVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp TTTTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3456899999999999 99999999999999999999999986
No 92
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.29 E-value=2.4e-13 Score=122.11 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
|+|+|++++|++++++|++++||.+||.+|+...|||+++|+|+|+|++|+|+.||+ ++++|||+.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSL 66 (189)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999 899999983
No 93
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.28 E-value=4.1e-12 Score=124.10 Aligned_cols=74 Identities=28% Similarity=0.377 Sum_probs=66.7
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEE---eCCeecCCCCcccccCCCCCCeEEEEecCCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL---YNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li---~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~~ 75 (410)
|+|+|+. +|+.+.++|++++||++||++|+..+|||+++|||+ |+|++|+|+.+|++|||++|++|||+..+..
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 4788997 799999999999999999999999999999999999 8999999999999999999999999966543
No 94
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.28 E-value=2.1e-12 Score=92.64 Aligned_cols=38 Identities=32% Similarity=0.461 Sum_probs=36.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 372 FEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 372 ~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
-++.|..|++|||+++||++||++++||+|||++|||+
T Consensus 19 e~e~V~~LvsMGFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 19 ERQCVETVVNMGYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46789999999999999999999999999999999995
No 95
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.28 E-value=3.2e-12 Score=94.58 Aligned_cols=41 Identities=32% Similarity=0.318 Sum_probs=38.1
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
...+++|++|++|||+|++|++||++|+||+++|++|||++
T Consensus 7 ~~~~~~I~~L~~MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 7 GVDEKALKHITEMGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp SSCHHHHHHHHTTTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 35689999999999999999999999999999999999863
No 96
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.27 E-value=7.4e-12 Score=95.11 Aligned_cols=42 Identities=33% Similarity=0.567 Sum_probs=38.4
Q ss_pred CCChHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 369 GADFEAKVAKLVELGF-GREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 369 ~~~~e~~i~~l~~mGf-~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
...++++|++|++||| +|+.+++||++++||+++|++|||+|
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3456899999999999 68999999999999999999999986
No 97
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=99.27 E-value=4.9e-12 Score=87.59 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=36.8
Q ss_pred ChHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 371 DFEAKVAKLVELGF-GREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 371 ~~e~~i~~l~~mGf-~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
..+++|++|++||| +|+.+++||++++||+++|++|||+|
T Consensus 6 ~~~~~i~~L~~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 6 RYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HTHHHHHHHHHTTCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 35789999999999 57888999999999999999999987
No 98
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.5e-11 Score=98.69 Aligned_cols=72 Identities=14% Similarity=0.362 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++.+|+.+.+.|.+++++..|+..++++.|++++++||+|+|+.|.++.|+++|++++||+|+|+..
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 578889889999999999999999999999999999999999999999999999999999999999999964
No 99
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=99.25 E-value=6.8e-12 Score=84.48 Aligned_cols=39 Identities=36% Similarity=0.582 Sum_probs=36.3
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhh
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLF 408 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~ 408 (410)
+..+++|++|++|||++++|++||++++||+++|++|||
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 356889999999999999999999999999999999996
No 100
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=3.7e-12 Score=94.56 Aligned_cols=40 Identities=28% Similarity=0.528 Sum_probs=37.9
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
...+++|++|++|||+|++|++||++++||+++|++|||+
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4578999999999999999999999999999999999986
No 101
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.24 E-value=2.9e-11 Score=92.20 Aligned_cols=70 Identities=14% Similarity=0.368 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEE
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~ 70 (410)
|+|+|++.+|+.+.+.|.++++++.|+...+++.|++++++||+|+|+.|.++.|.++|++++||+|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5789999899999999999999999999999999999999999999999999999999999999999986
No 102
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=99.24 E-value=5e-12 Score=90.42 Aligned_cols=41 Identities=34% Similarity=0.523 Sum_probs=38.1
Q ss_pred CChHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 370 ADFEAKVAKLVELGF-GREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf-~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
..++++|++|++||| +|+.|++||++++||+++|++|||+|
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 456789999999999 99999999999999999999999965
No 103
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=99.24 E-value=1.6e-11 Score=104.04 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=76.8
Q ss_pred cceeEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEEEEEE
Q 015264 192 ARVVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSF 271 (410)
Q Consensus 192 ~~~~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~~~~ 271 (410)
....+.++.++|||++++|||||||+.|+++...+. + .. ......|+|......+.....++|++......+
T Consensus 18 d~~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p---~---~~--~p~~I~GiGG~i~vr~~~~i~IeI~g~~~~~~~ 89 (132)
T 3slz_A 18 EPPPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP---L---SD--KSAWVQGATGGKRYRWTTDRKVHLATGKVTHSF 89 (132)
T ss_dssp CCCCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS---E---EE--EEEEEECSSCEEEEEEECCEEEEETTEEEEECC
T ss_pred CccCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC---C---CC--CceEEEccCCEEEEEEEeeeEEEECCeeecceE
Confidence 456688999999999999999999999999986554 1 11 123556776443344444568999998888777
Q ss_pred EEecCCCCceeeechhhhhcceEEEcc-CCEEE
Q 015264 272 VVLDSPNMEFLFGLDMLRKHQCIIDLK-ENVLR 303 (410)
Q Consensus 272 ~Vl~~~~~d~iLG~D~L~~~~~~ID~~-~~~l~ 303 (410)
.|+.. ...-|||+|||.+++|.+|+. .+.+.
T Consensus 90 lV~~~-tPvnLLGrd~Ltqlg~tL~fp~~g~~~ 121 (132)
T 3slz_A 90 LHVPD-CPYPLLGRDLLTKLKAQIHFEGSGAQV 121 (132)
T ss_dssp EECTT-SSSCEECHHHHHHHTCEEEEETTEEEE
T ss_pred EEECC-CCccEECHhhHhhCCcEEECCCCCcee
Confidence 66543 345799999999999999998 44343
No 104
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=99.23 E-value=2.6e-12 Score=89.46 Aligned_cols=41 Identities=34% Similarity=0.452 Sum_probs=38.0
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
++.+++|++|++|||+|.+|++||.+|+||+++|++|||++
T Consensus 2 ~~e~eaI~rL~~mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 2 SQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp -CCHHHHTTTTTTTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 35688999999999999999999999999999999999975
No 105
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=99.23 E-value=3.1e-11 Score=98.38 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=77.7
Q ss_pred eEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcCCccc-cccceeeEeeCCCcc-eeeeEEEEEeEEEcCEEEEEEEE
Q 015264 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRL-LDDRYRGVAHGVGQS-EILGRIHVAPIKIGNVFYPCSFV 272 (410)
Q Consensus 195 ~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~-~~~~~~~~~~g~g~~-~~~g~i~~~~l~ig~~~~~~~~~ 272 (410)
.+.++.++|||+++.||+||||+.|+++...+.+++|... -. .....|+|.. +.. ...+.+++.++....++.
T Consensus 7 ~RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~---p~~i~GiGG~i~v~--~~~i~i~i~g~~~~gtvl 81 (104)
T 1fmb_A 7 KRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQ---GTGIGGVGGNVETF--STPVTIKKKGRHIKTRML 81 (104)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEE---CCCEEETTEEECCE--EEEEEEEETTEEEEEEEE
T ss_pred CCCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCC---ccEEEeCCCeEEee--EeeeEEEECCeEEEEEEE
Confidence 5788999999999999999999999999999999998544 11 1345677643 444 677799999988877777
Q ss_pred EecCCCCceeeechhhhhcceEEEc
Q 015264 273 VLDSPNMEFLFGLDMLRKHQCIIDL 297 (410)
Q Consensus 273 Vl~~~~~d~iLG~D~L~~~~~~ID~ 297 (410)
|-+. ..-|||.|+|.+.+|.+||
T Consensus 82 v~~t--p~niiGRd~L~qlg~tLnf 104 (104)
T 1fmb_A 82 VADI--PVTILGRDILQDLGAKLVL 104 (104)
T ss_dssp EESC--SSCEECHHHHHHTTCCCCC
T ss_pred ECCC--CCCEecHhHHhhcCcEEeC
Confidence 7553 4579999999999999875
No 106
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=99.22 E-value=1.1e-11 Score=85.83 Aligned_cols=37 Identities=38% Similarity=0.469 Sum_probs=35.3
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhh
Q 015264 372 FEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLF 408 (410)
Q Consensus 372 ~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~ 408 (410)
.++.|++||+|||+|++|++||+.++||+|.|+++|+
T Consensus 11 ~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLl 47 (52)
T 2ooa_A 11 VDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILR 47 (52)
T ss_dssp CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999996
No 107
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.22 E-value=1.2e-11 Score=95.93 Aligned_cols=40 Identities=30% Similarity=0.406 Sum_probs=37.8
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
..++++|++||+|||+|++|++||++++||+++|++|||+
T Consensus 27 ~~~ee~I~~Lv~MGF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 27 SPSQESINQLVYMGFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp CCCHHHHHHHHHHSCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3468999999999999999999999999999999999996
No 108
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=2.2e-11 Score=84.90 Aligned_cols=39 Identities=21% Similarity=0.379 Sum_probs=36.1
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhh
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLF 408 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~ 408 (410)
...++.|++||+|||+|++|++||..++||+|.|+++|+
T Consensus 7 ~~~e~~I~~L~~lGF~r~~ai~AL~~a~nnve~Aa~iL~ 45 (53)
T 2d9s_A 7 GQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILR 45 (53)
T ss_dssp SCSHHHHHHHHHHTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhcCCHHHHHHHHH
Confidence 345788999999999999999999999999999999986
No 109
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=99.20 E-value=1.4e-11 Score=93.99 Aligned_cols=40 Identities=28% Similarity=0.463 Sum_probs=37.8
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
..+++|++|++|||+|++|++||++++||+++|++|||++
T Consensus 28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 28 IDQSSVDTLLSFGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp SCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4688999999999999999999999999999999999974
No 110
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.1e-11 Score=85.09 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=36.7
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
..++++|++|++|||+|++|++||++++ |+|+|++|||+.
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 7 GVNQQQLQQLMDMGFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp SSCHHHHHHHHHHHCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 4568999999999999999999999995 999999999963
No 111
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.19 E-value=8.1e-11 Score=91.40 Aligned_cols=70 Identities=14% Similarity=0.381 Sum_probs=66.6
Q ss_pred CEEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEE
Q 015264 1 MRITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 1 M~I~vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~ 70 (410)
|+|+|++.+|+ .+.+.|.+++++..|+..++.+.|++++++||+|+|+.|.++.|.++|++++||+|+|.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57888888896 89999999999999999999999999999999999999999999999999999999985
No 112
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=7.5e-11 Score=94.03 Aligned_cols=73 Identities=14% Similarity=0.357 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+|+.+.+.|.+++++..|+..++.+.|++++++||+|+|+.|.++.|.++|++++||+|+|+...
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 5688888889999999999999999999999999999999999999999999999999999999999999654
No 113
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=99.15 E-value=1.8e-11 Score=90.98 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=36.1
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHh-CCCHHHHHHhhhC
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLF-DGNEEQAAGFLFG 409 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~-~~n~~~A~~~l~~ 409 (410)
.+++.|++|++|||+|++|++||+++ +||+++|++|||+
T Consensus 8 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 8 AELTALESLIEMGFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCCCHHHHHHTTTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 34678999999999999999999999 6999999999986
No 114
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=99.14 E-value=3.4e-11 Score=87.34 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=36.7
Q ss_pred ChHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 371 DFEAKVAKLVELGF-GREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 371 ~~e~~i~~l~~mGf-~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
..+++|++|++||| +|+.+++||++++||+++|++|||+|
T Consensus 16 ~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 16 RYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 45789999999999 58889999999999999999999976
No 115
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.14 E-value=1.8e-11 Score=90.92 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=37.7
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHhhhCC
Q 015264 369 GADFEAKVAKLVELGFGREAVIQALKLFDG-NEEQAAGFLFGG 410 (410)
Q Consensus 369 ~~~~e~~i~~l~~mGf~r~~~~~aL~~~~~-n~~~A~~~l~~g 410 (410)
+...++.|++|++|||+|+.|++||++++| |+++|++|||++
T Consensus 6 ~~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 6 SGSSPSLLEPLLAMGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CCCSCSSHHHHHHTSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 344577899999999999999999999998 999999999863
No 116
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.13 E-value=2.1e-10 Score=91.82 Aligned_cols=72 Identities=14% Similarity=0.362 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|.|+|++.+|+.+.+.|.+++++..|+..++.+.|++++++||+|+|+.|.++.|.++|++.+||+|+++..
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 467888888999999999999999999999999999999999999999999999999999999999999864
No 117
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.13 E-value=2.8e-11 Score=89.90 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=36.6
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHhhhCC
Q 015264 372 FEAKVAKLVELGFGREAVIQALKLFDG-NEEQAAGFLFGG 410 (410)
Q Consensus 372 ~e~~i~~l~~mGf~r~~~~~aL~~~~~-n~~~A~~~l~~g 410 (410)
.++.|++|++|||+|++|++||++++| |+++|++|||++
T Consensus 19 ~e~~i~~L~~MGF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 19 HGSALDVLLSMGFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 457899999999999999999999999 999999999974
No 118
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.09 E-value=2.1e-10 Score=93.72 Aligned_cols=73 Identities=14% Similarity=0.357 Sum_probs=68.8
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+|++.+|+.+.+.|..++++..|+..++.+.|++++++||+|+|+.|.++.|.++|++++||+|+|+...
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q 97 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 97 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 5688888889999999999999999999999999999999999999999999999999999999999998543
No 119
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=7.9e-11 Score=89.98 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=37.3
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHhhhC
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFDG-NEEQAAGFLFG 409 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~~-n~~~A~~~l~~ 409 (410)
...++.|++|++|||+|++|++||++++| |+|+|++|||+
T Consensus 7 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 7 GLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp SSCHHHHHHHHHHSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 35689999999999999999999999997 89999999996
No 120
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=99.08 E-value=1e-10 Score=83.71 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=35.0
Q ss_pred ChHHHHHHHHhcCCCHHH-HHHHHHHhCCCHHHHHHhhhC
Q 015264 371 DFEAKVAKLVELGFGREA-VIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~-~~~aL~~~~~n~~~A~~~l~~ 409 (410)
.++++|++|++|||++++ +++||++++||+++|++|||+
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 458899999999996554 699999999999999999995
No 121
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.08 E-value=3.4e-10 Score=91.25 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=61.3
Q ss_pred EEEEEeC---CCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCC------ee-c-CCCCcccccCCCCCCeEEEE
Q 015264 2 RITVMTA---DEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG------RE-M-NNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 2 ~I~vk~~---~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~G------k~-L-~d~~tL~~~gI~~g~~i~l~ 70 (410)
+|+|++. +|+.+...++.++||.+||.+|+..+|+|+..|+|+|.+ .. | +|..+|+.|||.+|++|||.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 5667763 577889999999999999999999999999999999863 22 5 45689999999999999998
Q ss_pred ecC
Q 015264 71 SNA 73 (410)
Q Consensus 71 ~~~ 73 (410)
...
T Consensus 91 d~~ 93 (97)
T 1wjn_A 91 WSG 93 (97)
T ss_dssp CCS
T ss_pred ecC
Confidence 654
No 122
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=91.14 Aligned_cols=40 Identities=30% Similarity=0.328 Sum_probs=37.8
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
.+++.|++|++|||+|++|++||++++||+++|++|||++
T Consensus 28 ~~e~~i~~L~~MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 28 VDEAALRQLTEMGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CCHHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4689999999999999999999999999999999999964
No 123
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.05 E-value=3.1e-10 Score=93.48 Aligned_cols=73 Identities=12% Similarity=0.329 Sum_probs=69.1
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|.|+|++.+|+.+.+.|.+++++..|+..++.+.|++++++||+|.|+.|.++.|.++|++++||+|+|+...
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcc
Confidence 5788999889999999999999999999999999999999999999999999999999999999999998654
No 124
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.04 E-value=6.1e-10 Score=91.05 Aligned_cols=71 Identities=11% Similarity=0.267 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|++ +|+.+.+.|..++++..|+..++.+.|++++++||+|+|+.|.++.|.++|++++||+|+|+..
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~ 102 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHRE 102 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEee
Confidence 5688888 8999999999999999999999999999999999999999999999999999999999999864
No 125
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=98.98 E-value=3.7e-10 Score=78.67 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=36.7
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhh
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLF 408 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~ 408 (410)
+..|+.|++||+|||+|+.|++||..++||++.|.+.|+
T Consensus 5 ~p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv~~AtNiLl 43 (56)
T 2juj_A 5 PQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 43 (56)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCHHHHHHHHHHhcccHHHHHHHHH
Confidence 356899999999999999999999999999999999986
No 126
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=98.98 E-value=2.5e-09 Score=85.79 Aligned_cols=92 Identities=20% Similarity=0.297 Sum_probs=69.2
Q ss_pred eEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcCCcccccccee-eEeeCCCcceeeeEEEEEeEEEcCEEEEEEEEE
Q 015264 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYR-GVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVV 273 (410)
Q Consensus 195 ~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~-~~~~g~g~~~~~g~i~~~~l~ig~~~~~~~~~V 273 (410)
.+.|+.++|||+.+.||+||||+.|+++. ..+ ..+++ ....|+|...-.-+...+.+++.++....++.|
T Consensus 7 ~RP~vti~I~Gq~~e~LLDTGAD~TVl~~-----~~~----Pg~w~pk~igGiGG~i~v~qy~~i~iei~g~~~~gtvlV 77 (99)
T 3ec0_A 7 KRPVVTAYIEGQPVEVLLDTGADDSIVAG-----IEL----GNNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMT 77 (99)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEESS-----CCC----CSCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cCCeEEEEECCEEEEEEEecCCCceEEcC-----ccc----CCCCCceEEEecCCcEeeeEEeeEEEEECCeEEEEEEEe
Confidence 56789999999999999999999999963 333 22222 245677754333335667899999988778877
Q ss_pred ecCCCCceeeechhhhhcceEEEc
Q 015264 274 LDSPNMEFLFGLDMLRKHQCIIDL 297 (410)
Q Consensus 274 l~~~~~d~iLG~D~L~~~~~~ID~ 297 (410)
-+. .--|||-|+|.+.+|.++|
T Consensus 78 ~~t--PvniiGRnlLtqlG~tLnf 99 (99)
T 3ec0_A 78 GDT--PINIFGRNILTALGMSLNL 99 (99)
T ss_dssp ECC--SSCEECHHHHHHHTCEEEC
T ss_pred CCC--CcCeeehhhHhhcCcEEeC
Confidence 543 3368999999999999986
No 127
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=98.97 E-value=4.7e-10 Score=87.75 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=37.1
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhC-CCHHHHHHhhhC
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFD-GNEEQAAGFLFG 409 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~-~n~~~A~~~l~~ 409 (410)
..+++.|++|++|||+|++|++||++++ ||+++|++|||+
T Consensus 27 ~~~e~~v~~L~~MGF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 27 VANEEIVAQLVSMGFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3468999999999999999999999996 799999999996
No 128
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.96 E-value=3.6e-10 Score=83.83 Aligned_cols=40 Identities=30% Similarity=0.316 Sum_probs=34.9
Q ss_pred ChHHHHHHHHhcCCC-HHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 371 DFEAKVAKLVELGFG-REAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~-r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
.+++.|++|.+|||. |+.+++||++++||+++|++|||++
T Consensus 18 ~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 18 RFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 346799999999985 5566999999999999999999964
No 129
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.95 E-value=6.5e-10 Score=87.00 Aligned_cols=38 Identities=32% Similarity=0.390 Sum_probs=36.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 373 EAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 373 e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
+++|++|++|||+|++|++||++++||+++|++|||+.
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 88999999999999999999999999999999999963
No 130
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=98.95 E-value=7.4e-09 Score=83.28 Aligned_cols=92 Identities=21% Similarity=0.306 Sum_probs=70.7
Q ss_pred eEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcCCcccccccee-eEeeCCCcceeeeEEEEEeEEEcCEEEEEEEEE
Q 015264 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYR-GVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVV 273 (410)
Q Consensus 195 ~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~-~~~~g~g~~~~~g~i~~~~l~ig~~~~~~~~~V 273 (410)
.+.++.++|||+.++||+||||+.|+++.. .+ ..++. ....|+|...-+.+...+.+++.++....++.|
T Consensus 7 ~rP~vtvkI~Gq~~eaLLDTGAD~TVl~~~-----~~----p~~wkpk~igGiGG~i~v~qy~qi~iei~g~~~~gtvlV 77 (99)
T 2hs1_A 7 KRPLVTIKIGGQLKEALLDTGADDTIIEEM-----SL----PGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLV 77 (99)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSEEESCC-----SS----CCCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCEEEEEECCEEEEEEeccCCCcEEEecc-----cC----CCCCCCcEEEeCCCcEeeeEeccEEEEEeCCEEEEEEEe
Confidence 467899999999999999999999999953 33 22232 356777755444455667899999988888877
Q ss_pred ecCCCCceeeechhhhhcceEEEc
Q 015264 274 LDSPNMEFLFGLDMLRKHQCIIDL 297 (410)
Q Consensus 274 l~~~~~d~iLG~D~L~~~~~~ID~ 297 (410)
-+.. --|+|-|+|.+.+|.++|
T Consensus 78 ~~tP--vniiGRd~Ltqlg~tLnf 99 (99)
T 2hs1_A 78 GPTP--VNIIGRNLLTQIGATLNF 99 (99)
T ss_dssp SCCS--SCEECHHHHTTTTCEEEC
T ss_pred CCCc--cCchhHhHHHHcCCEEeC
Confidence 5532 359999999999999986
No 131
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=98.85 E-value=3.1e-09 Score=71.37 Aligned_cols=39 Identities=21% Similarity=0.372 Sum_probs=36.5
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhh
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLF 408 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~ 408 (410)
+..|+.|.+||+|||+|+.|++||-.++||++.|.+.|.
T Consensus 2 ~~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ 40 (46)
T 2oo9_A 2 SQLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILR 40 (46)
T ss_dssp CHHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 456899999999999999999999999999999999886
No 132
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=98.82 E-value=3.4e-09 Score=86.20 Aligned_cols=40 Identities=23% Similarity=0.527 Sum_probs=37.0
Q ss_pred ChHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 371 DFEAKVAKLVELGF-GREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 371 ~~e~~i~~l~~mGf-~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
..++.|++|.+||| +|+++++||++++||+++|++|||+|
T Consensus 65 ~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 65 QWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp TTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 45889999999999 67899999999999999999999975
No 133
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=98.80 E-value=3.9e-09 Score=89.21 Aligned_cols=40 Identities=35% Similarity=0.496 Sum_probs=38.0
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
..++.|++|++|||+|++|++||++++||+++|++|||++
T Consensus 77 ~~e~~v~~L~~MGF~~~~a~~AL~~~~~~~e~A~e~L~~~ 116 (126)
T 2lbc_A 77 PPEEIVAIITSMGFQRNQAIQALRATNNNLERALDWIFSH 116 (126)
T ss_dssp CCHHHHHHHHHHTSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4689999999999999999999999999999999999975
No 134
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.74 E-value=4.1e-08 Score=81.06 Aligned_cols=72 Identities=18% Similarity=0.406 Sum_probs=67.1
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
+|+|+..+|+.+.+.|..++++..|+...+.+.|+++.++|++|+|+.|.++.|.+++++.+||+|.|+..+
T Consensus 42 ~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 42 KLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp EEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 577777789988999999999999999999999999999999999999999999999999999999998643
No 135
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.73 E-value=7.8e-08 Score=86.93 Aligned_cols=93 Identities=16% Similarity=0.219 Sum_probs=73.7
Q ss_pred eEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcCCccccccce-eeEeeCCCcceeeeEEEEEeEEEcCEEEEEEEEE
Q 015264 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRY-RGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVV 273 (410)
Q Consensus 195 ~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~-~~~~~g~g~~~~~g~i~~~~l~ig~~~~~~~~~V 273 (410)
.+..+.++|||+++.||+||||+.|++.. +.|.. ++ .....|+|...-.-+...+.+++.++....++.|
T Consensus 7 ~RP~vtv~I~Gq~~e~LLDTGAD~TVl~~-----~~lpg----~w~pk~igGIGG~i~vrqy~~i~iei~g~~~~gtvlV 77 (203)
T 3ka2_A 7 KRPLVTIRIGGQLKEALLDTGADDTVIEE-----LNLPG----XWKPKLIGGIAGFIKVRQYDQIPVEIXGHKAIGTVLV 77 (203)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEECS-----CCCSS----CEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCeEEEEECCEEEEEEEecCCCceEEec-----ccCCC----CCCceEEEEccCcEEEEEEcceeEEEcCeEEEEEEee
Confidence 46678999999999999999999999983 44532 33 2356788865555566778999999888777777
Q ss_pred ecCCCCceeeechhhhhcceEEEcc
Q 015264 274 LDSPNMEFLFGLDMLRKHQCIIDLK 298 (410)
Q Consensus 274 l~~~~~d~iLG~D~L~~~~~~ID~~ 298 (410)
-+ ...-|||.|+|.+++|.+++.
T Consensus 78 g~--tPvnIiGRd~LtqlG~tLnf~ 100 (203)
T 3ka2_A 78 GP--TPVNIIGRNLLTQIGXTLNFX 100 (203)
T ss_dssp SC--CSSCEECHHHHTTTTCEEEGG
T ss_pred CC--CCcCccchhhhhhcCceEEec
Confidence 44 355699999999999999998
No 136
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=98.69 E-value=3.3e-08 Score=81.74 Aligned_cols=95 Identities=19% Similarity=0.164 Sum_probs=67.7
Q ss_pred eEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcCCccccccceee-E-eeCCCcceeeeEEEEEeEEEcCEE-----E
Q 015264 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRG-V-AHGVGQSEILGRIHVAPIKIGNVF-----Y 267 (410)
Q Consensus 195 ~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~-~-~~g~g~~~~~g~i~~~~l~ig~~~-----~ 267 (410)
.+-++ ++|||+.++||+||||+.|+|+...+..... ++.. . ..|+|...-.-+...+.++|.++. .
T Consensus 13 ~rP~v-ikI~Gq~~eaLLDTGAD~TVi~~~~~~~~p~------~wkpk~~igGiGG~i~v~qy~qv~iei~g~~~~~~~~ 85 (116)
T 2hah_A 13 RPEIL-IFVNGYPIKFLLDTGADITVLNRRDFQVKNS------IENGRQMIGGIGGFIRGTNYINVHLEIRDENYKTQCI 85 (116)
T ss_dssp CCEEE-EEETTEEEEEEECTTCSSCEEEGGGCCCTTC------EEEEEEEEEETTEEEEEEEEEEEEEEECCTTSCCEEE
T ss_pred CCCEE-EEECCEEEEEEecCCCCcEEEcccccccCCC------CCCCceEEecCCCceeeeEEccEEEEEeCCCCCccee
Confidence 36788 9999999999999999999999654321121 2222 2 567775433335556788998866 6
Q ss_pred EEEEEEec-CCCCceeeechhhhhcceEEE
Q 015264 268 PCSFVVLD-SPNMEFLFGLDMLRKHQCIID 296 (410)
Q Consensus 268 ~~~~~Vl~-~~~~d~iLG~D~L~~~~~~ID 296 (410)
..++.|.+ ....--|||-|+|.+.+|.+.
T Consensus 86 ~gtvlV~p~tP~~vniiGRd~Ltqlg~tL~ 115 (116)
T 2hah_A 86 FGNVCVLEDNSTPVNILGRDNMIKFNIRLV 115 (116)
T ss_dssp EEEEEEETTCCCSSEEECHHHHTTTTCCCC
T ss_pred EEEEEECCCCCccccEecHHHHhHcCCEEe
Confidence 77778887 431236999999999999874
No 137
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.60 E-value=3e-08 Score=76.99 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=57.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCee---c--CCCCcccccCCCCCCeEEEE
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGRE---M--NNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~---L--~d~~tL~~~gI~~g~~i~l~ 70 (410)
|.|.||+.+| .+.|++++++|+.+|+.+|++.++++++.|.|.++-.. | ..+.+|+++||+.||+|+|.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6688888777 56789999999999999999999999988877654433 3 36789999999999999985
No 138
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.59 E-value=3.1e-08 Score=82.37 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=36.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 372 FEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 372 ~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
+.+.|.+|++|||++++|+.||+.++||+|+|++|||+
T Consensus 76 ~~~~v~~L~eMGF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 76 FLQLMSKFKEMGFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999996
No 139
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=98.57 E-value=4.1e-08 Score=86.35 Aligned_cols=42 Identities=40% Similarity=0.588 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 369 GADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 369 ~~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
+++.+++|++|++|||+|+.|++||.+|+||++.|++|||++
T Consensus 127 tpee~eaI~rL~~mGF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 127 TPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 345678999999999999999999999999999999999974
No 140
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.54 E-value=7.4e-08 Score=77.27 Aligned_cols=41 Identities=34% Similarity=0.608 Sum_probs=38.4
Q ss_pred CChHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 370 ADFEAKVAKLVEL-GFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 370 ~~~e~~i~~l~~m-Gf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
...+++|+.|++| ||++++|+.||..|+||+++|+++||+|
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3458999999999 9999999999999999999999999976
No 141
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.47 E-value=4.4e-07 Score=82.15 Aligned_cols=71 Identities=11% Similarity=0.255 Sum_probs=66.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
+|+|+. +|+.+.+.|..++++..|+...+.+.|+++.++|++|+|+.|.++.|.+++++.+||+|+++...
T Consensus 31 ~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q 101 (200)
T 3pge_A 31 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 101 (200)
T ss_dssp EEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred EEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEecc
Confidence 567764 78889999999999999999999999999999999999999999999999999999999999543
No 142
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=98.46 E-value=1.1e-07 Score=86.63 Aligned_cols=41 Identities=32% Similarity=0.502 Sum_probs=38.4
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 369 GADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 369 ~~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
....+++|++|++|||+|++|++||+.++||+++|+++||+
T Consensus 160 ~~~~eekV~~l~~MGf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 160 SPEYTKKIENLCAMGFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CHHHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34569999999999999999999999999999999999996
No 143
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.43 E-value=3.7e-07 Score=81.17 Aligned_cols=71 Identities=13% Similarity=0.263 Sum_probs=65.6
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
.|+|+. +|+.+.+.|..++++..|+...+.+.|+++.++|++|+|+.|.++.|.+++++.+||+|+|+...
T Consensus 59 nLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ 129 (207)
T 3tix_A 59 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQ 129 (207)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCC
T ss_pred EEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEec
Confidence 466654 78889999999999999999999999999999999999999999999999999999999998654
No 144
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=98.30 E-value=6e-07 Score=63.40 Aligned_cols=40 Identities=30% Similarity=0.325 Sum_probs=36.7
Q ss_pred CChHHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 370 ADFEAKVAKLVELGF-GREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf-~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
..+...+++|.+||| +++..++||+.++||+++|++.|+.
T Consensus 7 e~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp TTHHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456778999999999 9999999999999999999999984
No 145
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=98.26 E-value=7.8e-06 Score=73.85 Aligned_cols=92 Identities=17% Similarity=0.264 Sum_probs=69.0
Q ss_pred eEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcCCcccccccee-eEeeCCCcceeeeEEEEEeEEEcCEEEEEEEEE
Q 015264 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYR-GVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVV 273 (410)
Q Consensus 195 ~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~-~~~~g~g~~~~~g~i~~~~l~ig~~~~~~~~~V 273 (410)
.+..+.++|+|+.+.+|+||||+.|++. ...+. .+++ ....|+|..--.-+...+.+++.++....++.|
T Consensus 111 ~rP~~~iki~Gq~~e~LlDTGAD~TVl~-----~~~lp----g~w~pk~igGiGg~i~v~qy~~i~iei~g~~~~~tvlV 181 (203)
T 3ka2_A 111 KRPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLP----GXWKPKLIGGIGGFIKVRQYDQIPVEIXGHKAIGTVLV 181 (203)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCC----SCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCcEEEEECCEEEeeeecccCCceeee-----cccCC----CCCCceEEeeccceEEEEEeccEEEEECCeEEEEEEEE
Confidence 3566889999999999999999999995 23332 2332 245677754333344667889999888888877
Q ss_pred ecCCCCceeeechhhhhcceEEEc
Q 015264 274 LDSPNMEFLFGLDMLRKHQCIIDL 297 (410)
Q Consensus 274 l~~~~~d~iLG~D~L~~~~~~ID~ 297 (410)
-+. .--|+|-|.|.+++|.++|
T Consensus 182 gpt--PvniiGRn~LtqlG~tl~f 203 (203)
T 3ka2_A 182 GPT--PVNIIGRNLLTQIGXTLNF 203 (203)
T ss_dssp SCC--SSCEECHHHHGGGTCEEEC
T ss_pred CCC--CcCeechhhHHHhCCeeeC
Confidence 654 4569999999999999986
No 146
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.26 E-value=6.1e-06 Score=62.43 Aligned_cols=68 Identities=16% Similarity=0.313 Sum_probs=61.9
Q ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcC-CeEEEeCCeecCCCCcccccCCCCCCeEEEE
Q 015264 3 ITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQ-QQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 3 I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~-~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~ 70 (410)
+.++.....-+.+.|.++.+|.+|-+.-..+.||+++ ..+|.|.|..|..+.++.+|++.+||.|-++
T Consensus 12 ~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEE
T ss_pred HhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeee
Confidence 4456666666889999999999999999999999999 8999999999999999999999999999886
No 147
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=98.26 E-value=7.1e-07 Score=74.14 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=36.4
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
...+.|++|++|||+++.|++||+++|+|++.|++|||.
T Consensus 7 ~e~~~v~~l~~MGFp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 7 SERQCVETVVNMGYSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 456789999999999999999999999999999999984
No 148
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.18 E-value=7.4e-06 Score=65.60 Aligned_cols=69 Identities=12% Similarity=0.310 Sum_probs=63.1
Q ss_pred EEEEEeCCCC-EEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEE
Q 015264 2 RITVMTADEQ-IISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 2 ~I~vk~~~g~-~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~ 70 (410)
.|+|+..+|+ .+.+.|..++++..|....+.+.|++++..+++|+|..|..+.|.+++++.+||+|.+.
T Consensus 27 ~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 27 QLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4666676774 78899999999999999999999999999999999999999999999999999999875
No 149
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=98.14 E-value=2.4e-06 Score=70.09 Aligned_cols=100 Identities=15% Similarity=0.093 Sum_probs=56.5
Q ss_pred EEEEEeEecCEeEEEeecCCCcccccCHHHHHHcCCccccccc-eeeEeeCCCcc-eeeeEEEEEeEE-EcCEEEEEEEE
Q 015264 196 MLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDR-YRGVAHGVGQS-EILGRIHVAPIK-IGNVFYPCSFV 272 (410)
Q Consensus 196 ~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~-~~~~~~g~g~~-~~~g~i~~~~l~-ig~~~~~~~~~ 272 (410)
+..+.++|||+.+.+|+||||+.|+|...- +...-... ......|+|.. +..-+-....++ +.++.......
T Consensus 9 RP~vti~I~Gq~~eaLLDTGADdTVi~~~~-----lpg~W~p~~~~k~igGIGG~i~v~qy~~~~~~~~i~g~k~i~tvl 83 (114)
T 3sqf_A 9 KPSLTLWLDDKMFTGLINTGADVTIIKLED-----WPPNWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKENNSGLIKPF 83 (114)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEEGGG-----SCTTSCEEECCCCCTTCCGGGCCEEESSCEEEECTTCCEEEECCE
T ss_pred CCeEEEEECCEEEEEEEccCCCceEEeccc-----CCCCcccCcCceEEEeccceEEEEEeccceEEEecCCCEEEEEEE
Confidence 556789999999999999999999998532 21111100 00234577632 222111111223 56766555556
Q ss_pred EecCCCCceeeechhhhhcceEEEccCCE
Q 015264 273 VLDSPNMEFLFGLDMLRKHQCIIDLKENV 301 (410)
Q Consensus 273 Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~ 301 (410)
|+..- .--|+|-|.|.+.+|.+++.+..
T Consensus 84 V~~pt-PvNIiGRn~LtqlG~tLnfp~~~ 111 (114)
T 3sqf_A 84 VIPNL-PVNLWGRDLLSQMKIMMASPNDI 111 (114)
T ss_dssp EETTC-SSCEECHHHHTTSCC--------
T ss_pred ECCCC-cccEEchhhHhhcCcEEECCCcc
Confidence 66322 33489999999999999887543
No 150
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.12 E-value=4.9e-07 Score=89.57 Aligned_cols=41 Identities=34% Similarity=0.445 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 369 GADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 369 ~~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
..+.+++|++|++|||+|++|++||++|+||+++|++|||+
T Consensus 322 t~ee~eaI~rL~~mGF~~~~a~~al~a~~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 322 TPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLS 362 (368)
T ss_dssp CTTTHHHHHHHHHHTCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred CCcCHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 45678999999999999999999999999999999999996
No 151
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.12 E-value=3.3e-07 Score=82.63 Aligned_cols=72 Identities=11% Similarity=0.275 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|.|+| ..+|+.+.+.|..++++..|+...+++.|++++++|++|+|+.|.++.|.+++++++||+|+++...
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp -------------------------------------------------------------------------
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecc
Confidence 45667 5578888899999999999999999999999999999999999999999999999999999998543
No 152
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.06 E-value=6e-06 Score=57.62 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=34.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCC-CHHHHHHhhh
Q 015264 372 FEAKVAKLVELGFGREAVIQALKLFDG-NEEQAAGFLF 408 (410)
Q Consensus 372 ~e~~i~~l~~mGf~r~~~~~aL~~~~~-n~~~A~~~l~ 408 (410)
.-..+++|++|||+++-|+.||+.+|| .++.|++||.
T Consensus 9 n~qmlq~L~eMGFd~erae~Alk~Tg~~Gle~AmewL~ 46 (54)
T 2cos_A 9 NRQMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYIS 46 (54)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345799999999999999999999998 8999999995
No 153
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.00 E-value=2.1e-05 Score=62.38 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=43.7
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCC--Cccccc
Q 015264 9 DEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNA--EKLSAL 59 (410)
Q Consensus 9 ~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~--~tL~~~ 59 (410)
.+..+.+.+.++.||..||+.|++++|||+++|+|+|.|+.|.-+ ..-..|
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~ 74 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHF 74 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGS
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccC
Confidence 478899999999999999999999999999999999999877633 334444
No 154
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=97.96 E-value=5.8e-06 Score=77.70 Aligned_cols=41 Identities=32% Similarity=0.469 Sum_probs=38.3
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 369 GADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 369 ~~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
....+++|++|++|||+|++|+.||..++||+++|+++||+
T Consensus 212 ~~~~~~~v~~l~~mgf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 212 SPEYTKKIENLCAAGFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CHHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 34578999999999999999999999999999999999986
No 155
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=97.89 E-value=7.5e-06 Score=68.24 Aligned_cols=93 Identities=18% Similarity=0.214 Sum_probs=57.3
Q ss_pred eEEEEEeE----------ecCEeEEEeecCCCcccccCHHHHHHcCCccccccceeeE------eeCCCcceeeeEEE-E
Q 015264 195 VMLYVDME----------VNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGV------AHGVGQSEILGRIH-V 257 (410)
Q Consensus 195 ~~ly~~v~----------Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~------~~g~g~~~~~g~i~-~ 257 (410)
.+-.+.++ |+|+.+.||+||||+.|+++.. .+. .++..+ ..|+|...-.-+.. .
T Consensus 9 ~rP~v~v~~~~~~~~p~~i~gq~~eaLLDTGAD~TVl~~~-----~lP----~~W~k~~~~~~~igGIGG~i~v~qy~~~ 79 (124)
T 2rsp_A 9 DRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISEE-----DWP----TDWPVMEAANPQIHGIGGGIPMRKSRDM 79 (124)
T ss_dssp SCCEEEEEEEECCSSCCSCSEEEEEEEECTTCSSCEEETT-----TSC----TTSCEEECC---------CCCEEEESSC
T ss_pred hCCeEEEEeccCCCCcccCCCEEEEEEecCCCCcEEEecc-----cCC----CcceeeccccceeeecCceEeeEEeCCc
Confidence 45566777 9999999999999999999852 221 222222 55666432222333 5
Q ss_pred EeEEEcCE--EEEEEEEEecCC--CCceeeechhhhhcceEEE
Q 015264 258 APIKIGNV--FYPCSFVVLDSP--NMEFLFGLDMLRKHQCIID 296 (410)
Q Consensus 258 ~~l~ig~~--~~~~~~~Vl~~~--~~d~iLG~D~L~~~~~~ID 296 (410)
+.+++.++ ....++.|.+.. ..--|+|-|.|.+.+|.+.
T Consensus 80 i~iei~g~~g~~~~tvlV~P~~~~tPvnIiGRdlLtqlG~tL~ 122 (124)
T 2rsp_A 80 IELGVINRDGSLERPLLLFPAVAMVRGSILGRDCLQGLGLRLT 122 (124)
T ss_dssp EEEEEECTTSCBCCCEEECCEEESCSSEEECHHHHHHTTCEEE
T ss_pred eEEEEeCCCCcEEEEEEECcCCCCCceeEECHhHHhhCCcEEe
Confidence 56777665 445566666521 1235999999999999884
No 156
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.83 E-value=8.7e-05 Score=58.07 Aligned_cols=75 Identities=11% Similarity=0.114 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecCCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNAAS 75 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~~~ 75 (410)
|.|+|-+.+++...|.|.+++++.++-+....++|+.+++..|.|++|.|+-..++.-.||.+|+.|.|+.....
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSSC
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccCC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999976543
No 157
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.72 E-value=0.0002 Score=56.60 Aligned_cols=70 Identities=14% Similarity=0.212 Sum_probs=64.4
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
.|+|++ +|....+.|..++.+..|....+.+.|++++..|+.|+|..+.++.|-+++++.+||+|.++.-
T Consensus 23 niKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 23 PLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 567775 6888889999999999999999999999999999999999999999999999999999998753
No 158
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.71 E-value=8.9e-05 Score=67.74 Aligned_cols=71 Identities=11% Similarity=0.255 Sum_probs=64.9
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
.|+|++ +|+.+.+.|..++++..|+...+++.|++++++|++|.|+.+.+++|-.++.+.++|+|.+....
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq 93 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQ 93 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccc
Confidence 456666 67778899999999999999999999999999999999999999999999999999999998654
No 159
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.64 E-value=9e-05 Score=62.12 Aligned_cols=71 Identities=14% Similarity=0.243 Sum_probs=59.5
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcC-------------------------------------CeEEE
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQ-------------------------------------QQQLL 44 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~-------------------------------------~q~Li 44 (410)
.++|+.++|...++.|+.+.+|.+++..|+.+.||+.. .++|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 37899999999999999999999999999999999854 33432
Q ss_pred e--CCeecCCCCcccccCCCCCCeEEEEec
Q 015264 45 Y--NGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 45 ~--~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
. .+.-|++..||.++||.++++|.|.++
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 125677789999999999999998765
No 160
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.60 E-value=0.00014 Score=56.05 Aligned_cols=68 Identities=16% Similarity=0.241 Sum_probs=57.9
Q ss_pred EEEEEeC--CCCEEEEEeCCCCCHHHHHHHHHHHhCCCc-----CCeEEEeCCeecCCCCcccccCCCCCCeEEE
Q 015264 2 RITVMTA--DEQIISLDVDPHETVENVKALLEVETQVPL-----QQQQLLYNGREMNNAEKLSALGVKDEDLVMM 69 (410)
Q Consensus 2 ~I~vk~~--~g~~~~iev~~~~TV~~LK~~I~~~~gip~-----~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l 69 (410)
.||+... .++.+.+.++...||..|+..+.+.++++. -+.|+.-+|..|.++.+|++|+|.+||.|.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 4555543 589999999999999999999999998765 2456778899999999999999999999875
No 161
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.48 E-value=1.6e-05 Score=77.98 Aligned_cols=69 Identities=12% Similarity=0.259 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
.|+|+. +|+.+.+.|..++++..|+...+++.|++++.+|++|+|+.|.++.|.+++++++||+|.++.
T Consensus 23 ~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 456665 577788899999999999999999999999999999999999999999999999999999984
No 162
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.25 E-value=0.0013 Score=50.93 Aligned_cols=69 Identities=10% Similarity=0.249 Sum_probs=59.3
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEE--eCCeecC---CCCcccccCCCCCCeEEEEe
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL--YNGREMN---NAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li--~~Gk~L~---d~~tL~~~gI~~g~~i~l~~ 71 (410)
+|.||..+|+.+.-....+.||.+|...|.. .+.++..++|+ |-.|.|. .++||+++|+.++++|+|-.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 5789999999887788999999999999998 67778888998 5578884 35899999999999999864
No 163
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.22 E-value=0.00044 Score=49.96 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=36.5
Q ss_pred CChHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 370 ADFEAKVAKLVEL--GFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 370 ~~~e~~i~~l~~m--Gf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
...|++|+.|.+| .++++.+..+|++++||+|+|++.|+.
T Consensus 7 ~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 7 GCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4568999999999 778999999999999999999999974
No 164
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.17 E-value=5.9e-05 Score=75.35 Aligned_cols=70 Identities=11% Similarity=0.255 Sum_probs=0.0
Q ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEecC
Q 015264 3 ITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 3 I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~~ 73 (410)
|+|+. +|....+.|..++++..|+...+++.|+++.+++++|+|+.|.++.|-+++++++||+|.++..+
T Consensus 33 lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q 102 (389)
T 4da1_A 33 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQ 102 (389)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecc
Confidence 45555 56777889999999999999999999999999999999999999999999999999999998543
No 165
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=97.04 E-value=0.00092 Score=54.43 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=56.4
Q ss_pred EEEEEeEec-----CEeEEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCCcceeeeEEEEEeEEEcC----EE
Q 015264 196 MLYVDMEVN-----GIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGN----VF 266 (410)
Q Consensus 196 ~ly~~v~In-----g~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~----~~ 266 (410)
+-.+.++|+ |+.+.||+||||+.|+|.. ..+...-......+..|+|...-.-+....++.+-. ..
T Consensus 10 RPlvtikI~~~~~~Gq~~eaLLDTGADdTVl~~-----~~lPg~Wkp~~tkiiGGiGg~~~~~qs~~~pv~i~lpfr~~p 84 (116)
T 3liy_A 10 RPVIKAQVDTQTSHPKTIEALLDTGADMTVIPI-----ALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTP 84 (116)
T ss_dssp CCEEEEEEECSSSCCEEEEEEECTTBSSCEEEG-----GGSCTTCCEEECCEEETTEEESSSEEEESSCEEEECTTCCSC
T ss_pred CCeEEEEEccccCCCeEeEEEeccCCCccEEec-----ccCCCCCcccccceEeecccceeeeEecCCCeEEEeccCCcc
Confidence 567899999 9999999999999999974 333222111111245666633222233333444432 22
Q ss_pred EEEEEEEecCCCCceeeechhhhhcceEEE
Q 015264 267 YPCSFVVLDSPNMEFLFGLDMLRKHQCIID 296 (410)
Q Consensus 267 ~~~~~~Vl~~~~~d~iLG~D~L~~~~~~ID 296 (410)
+..+...++..+.=-|||-|.|.+.+-.+.
T Consensus 85 v~l~~~lv~~~~~w~iigRd~l~q~q~~l~ 114 (116)
T 3liy_A 85 IVLTSCLVDTKNNWAIIGRDALQQCQGVLY 114 (116)
T ss_dssp EEESSCEEETTSCCCEECHHHHHHTTCEEE
T ss_pred eeeceEEEcCCCceeEechhHHhhhccEEe
Confidence 222223334333456999999998876654
No 166
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=97.01 E-value=0.0001 Score=67.61 Aligned_cols=39 Identities=28% Similarity=0.325 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 372 FEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 372 ~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
.+++|++|++|||++++|+.||...+||+++|++.||+|
T Consensus 177 ~~~~v~~~~~mgf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 177 REVIIKKITEMGFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp ---------------------------------------
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 478999999999999999999999999999999999976
No 167
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=97.00 E-value=0.00075 Score=57.82 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=68.3
Q ss_pred cceeEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcC----------C---------ccccccceeeEeeCCCcc---
Q 015264 192 ARVVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCG----------L---------LRLLDDRYRGVAHGVGQS--- 249 (410)
Q Consensus 192 ~~~~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lg----------l---------~~~~~~~~~~~~~g~g~~--- 249 (410)
+..-.++++-. |.+++|=|||||..|-|+..-.+.+. + ...+- +...+....|..
T Consensus 6 G~~E~v~lp~l--g~~~~AKiDTGA~TSSLhA~dI~~Ferdg~~wVrF~~~~~~~~~~~e~pv~-~~~~Ik~s~g~~~~~ 82 (146)
T 2pma_A 6 GYVEKATLIDQ--NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYV-GKVKIKVRSSETNPG 82 (146)
T ss_dssp ESEEEEEEGGG--TEEEEEEECTTCSSEEEECEEEEEEEETTEEEEEEEEEETTEEEEEEEEEE-EEEEC----------
T ss_pred eeeEEEEECCC--CCEEEEEecCCcCcceecceeEEEeeeCCCcEEEEEEecCCCCceEEEEeE-EEEEEecCCCccccc
Confidence 44444444433 77899999999999999887665322 1 00000 111111111220
Q ss_pred -----eeeeEEEEEeEEEcCEEEEEEEEEecC--CCCceeeechhhhhcceEEEccCCE
Q 015264 250 -----EILGRIHVAPIKIGNVFYPCSFVVLDS--PNMEFLFGLDMLRKHQCIIDLKENV 301 (410)
Q Consensus 250 -----~~~g~i~~~~l~ig~~~~~~~~~Vl~~--~~~d~iLG~D~L~~~~~~ID~~~~~ 301 (410)
...=.+-...|+||+...+..|...+. -.|.+|||-+||+..++.+|.....
T Consensus 83 ~~~~~~e~R~VV~~~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~lVD~s~~~ 141 (146)
T 2pma_A 83 LLRTTPIKRPVVLLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPALTF 141 (146)
T ss_dssp -----CCEEEEEEEEEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTEEEETTCCC
T ss_pred cccCCcccccEEEEEEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCEEECCchhc
Confidence 122234455899999999999999983 4789999999999999999987653
No 168
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.98 E-value=0.0048 Score=50.22 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=62.5
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEE--eCCeecC--C-CCcccccCCCCCCeEEEEecC
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL--YNGREMN--N-AEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li--~~Gk~L~--d-~~tL~~~gI~~g~~i~l~~~~ 73 (410)
+|.||..+|+.+.-....+.||.+|...|....+.+.....|+ |-.|.|. | ++||+++|+.+..+|++....
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~~ 91 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPAG 91 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECCS
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEECc
Confidence 5789999999988899999999999999999988777788887 6678887 3 589999999999999988654
No 169
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=96.95 E-value=0.00058 Score=47.31 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=35.5
Q ss_pred hHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 372 FEAKVAKLVEL--GFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 372 ~e~~i~~l~~m--Gf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
-+++++.|.+| ..++.++..+|++++||.|+|+..|+.
T Consensus 4 ~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 4 HESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 47899999999 899999999999999999999999985
No 170
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=96.85 E-value=0.0016 Score=47.64 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=33.9
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHhhh
Q 015264 372 FEAKVAKLVEL-GFGREAVIQALKLFDGNEEQAAGFLF 408 (410)
Q Consensus 372 ~e~~i~~l~~m-Gf~r~~~~~aL~~~~~n~~~A~~~l~ 408 (410)
..+.|+.|.+. |.+..+|..||..++||++.|++||-
T Consensus 9 t~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr 46 (64)
T 2cp9_A 9 SKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLH 46 (64)
T ss_dssp CCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 35789999985 99999999999999999999999984
No 171
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=96.77 E-value=0.0011 Score=72.56 Aligned_cols=40 Identities=28% Similarity=0.527 Sum_probs=37.3
Q ss_pred CChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 370 ADFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
...++.|..|.+|||++++|++||++++||+++|++|||+
T Consensus 718 ~~~~e~i~~l~~mGf~~~~a~~aL~~t~~~~eraidwlfs 757 (854)
T 3ihp_A 718 PPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFS 757 (854)
T ss_dssp -CCHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHhhcCcHHHHHHhhhc
Confidence 4568999999999999999999999999999999999985
No 172
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=96.65 E-value=0.002 Score=43.85 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=34.6
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 372 FEAKVAKLVEL-GFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 372 ~e~~i~~l~~m-Gf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
.++.|+++++. |.+++.|+..|++++||.+.|++..|.
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 46789999995 999999999999999999999998764
No 173
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.64 E-value=0.0031 Score=45.98 Aligned_cols=40 Identities=13% Similarity=0.239 Sum_probs=35.7
Q ss_pred CChHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 370 ADFEAKVAKLVEL-GFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 370 ~~~e~~i~~l~~m-Gf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
...++.|++++++ |.+++.|+..|++++||.++|+...|.
T Consensus 13 ~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 13 SALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3457899999995 999999999999999999999998763
No 174
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.59 E-value=0.0078 Score=50.14 Aligned_cols=70 Identities=11% Similarity=0.220 Sum_probs=60.4
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEE--eCCeec--CC-CCcccccCCCCCCeEEEEec
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL--YNGREM--NN-AEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li--~~Gk~L--~d-~~tL~~~gI~~g~~i~l~~~ 72 (410)
+|.||..+|+.+.-....+.||.+|...|... +.++....|+ |-.|.| .| ++||.++|+.+..+|+|...
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~ 119 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES 119 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence 57899999998888899999999999999887 7777888887 668888 34 68999999999998888754
No 175
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.41 E-value=0.01 Score=43.87 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=36.4
Q ss_pred CCChHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 369 GADFEAKVAKLVEL--GFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 369 ~~~~e~~i~~l~~m--Gf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
....++++++|.+| .++++.+...|++++||+|+|++-|+.
T Consensus 15 ~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 15 RLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45678999999999 567999999999999999999999874
No 176
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=96.06 E-value=0.0068 Score=48.65 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=33.9
Q ss_pred ChHHHHHHHHh-cCCCHHHHHHHHHHhCCCHHHHHHhh
Q 015264 371 DFEAKVAKLVE-LGFGREAVIQALKLFDGNEEQAAGFL 407 (410)
Q Consensus 371 ~~e~~i~~l~~-mGf~r~~~~~aL~~~~~n~~~A~~~l 407 (410)
..+++|.-+|+ .|.||++|++||+.|+||+=.|+-+|
T Consensus 64 i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 64 IPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 34789999998 79999999999999999999999887
No 177
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.94 E-value=0.023 Score=46.05 Aligned_cols=71 Identities=6% Similarity=0.104 Sum_probs=59.0
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEE--eCCeecC-C-CCcccccCCCCCCeEEEEecC
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL--YNGREMN-N-AEKLSALGVKDEDLVMMVSNA 73 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li--~~Gk~L~-d-~~tL~~~gI~~g~~i~l~~~~ 73 (410)
+|.||..+|+.+.-....+.||.+|...|... +..+...+|+ |-.|.|. | +.||+++|+.+..+|+|....
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~ 99 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKE 99 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence 57889999998877888999999999999965 5566778887 6678887 3 589999999999999887543
No 178
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=95.93 E-value=0.028 Score=42.33 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=49.3
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
|+|+|+........++++...||.||- .+.|+|++...+..||+.+..+. +.+||.|.+++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL----~~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLV----RAVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHH----HTTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHH----HHcCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence 899999975555668999999999876 46789999888889999887665 33599998874
No 179
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.84 E-value=0.017 Score=42.50 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=33.6
Q ss_pred HHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 374 AKVAKLVEL-GFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 374 ~~i~~l~~m-Gf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
+.|+++++. |.++++|+..|++++||.++|++..|.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 789999996 999999999999999999999998774
No 180
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.84 E-value=0.011 Score=43.67 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=35.4
Q ss_pred CChHHHHHHHHhc-C-CCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 370 ADFEAKVAKLVEL-G-FGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 370 ~~~e~~i~~l~~m-G-f~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
...+++|++++++ | -+.+.|+..|++++||.+.|+...|.
T Consensus 16 ~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 16 QEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3457899999996 9 88999999999999999999998774
No 181
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.73 E-value=0.026 Score=47.08 Aligned_cols=66 Identities=11% Similarity=0.245 Sum_probs=54.8
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHh-CCCcCCeEEE--eCCeecCC-CCcccccCCCCCCeE
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVET-QVPLQQQQLL--YNGREMNN-AEKLSALGVKDEDLV 67 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~-gip~~~q~Li--~~Gk~L~d-~~tL~~~gI~~g~~i 67 (410)
+|.||..+|+.+.-....+.||.+|...|.... +.......|+ |-.|.|.| +.||.++|+.+..+|
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 588999999998888999999999999999863 3555677887 66889986 589999999985544
No 182
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=95.67 E-value=0.0065 Score=41.99 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=33.7
Q ss_pred CChHHHHHHHHhcCCCHHHH--HHHHHHhCCCHHHHHHhhh
Q 015264 370 ADFEAKVAKLVELGFGREAV--IQALKLFDGNEEQAAGFLF 408 (410)
Q Consensus 370 ~~~e~~i~~l~~mGf~r~~~--~~aL~~~~~n~~~A~~~l~ 408 (410)
+.-++.|.++++|||+-+-. .++|...+||..+|++.|-
T Consensus 8 ~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 8 PRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp HHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhh
Confidence 34578999999999998876 4899999999999998763
No 183
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=95.24 E-value=0.017 Score=43.18 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=32.4
Q ss_pred HHHHHHHhcCHHHHHH----HhhcCHHHHHHhccCCHHHHHHHHH
Q 015264 94 AAFQQHIRNDANLMTQ----LFQSDPELAQVLLGNDLNKLQDLLR 134 (410)
Q Consensus 94 ~~~~~~~~~nP~~l~~----l~~~nP~L~~ai~~~~~~~~~~~l~ 134 (410)
..+|+.+.+||+++.. |..+||+|.+.|. .|++.|-++|.
T Consensus 16 ~qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~-~n~e~Fl~ll~ 59 (72)
T 1pve_A 16 QQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS-QHQEHFIQMLN 59 (72)
T ss_dssp TTHHHHHTTCGGGHHHHHHHHHTTCHHHHHHHH-TTHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHH-HCHHHHHHHHc
Confidence 5689999999988554 5559999999996 68888888774
No 184
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=95.21 E-value=0.021 Score=38.68 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=33.4
Q ss_pred ChHHHHHHHHhc-CCCH-HHHHHHHHHhCCCHHHHHHhhh
Q 015264 371 DFEAKVAKLVEL-GFGR-EAVIQALKLFDGNEEQAAGFLF 408 (410)
Q Consensus 371 ~~e~~i~~l~~m-Gf~r-~~~~~aL~~~~~n~~~A~~~l~ 408 (410)
..++.|+++.++ |.+. ++|+.-|.+++||.+.|+.-.+
T Consensus 4 d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 4 DREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 468899999997 9985 9999999999999999997654
No 185
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=95.18 E-value=0.16 Score=51.31 Aligned_cols=92 Identities=16% Similarity=0.316 Sum_probs=62.8
Q ss_pred eeEEEEEeEec--CEeEEEeecCCCcccccCHHHH--HHcCCccccccc----------eeeEeeCCCcceeeeEEEEEe
Q 015264 194 VVMLYVDMEVN--GIPLKAFVDSGAQSTIISKSCA--ERCGLLRLLDDR----------YRGVAHGVGQSEILGRIHVAP 259 (410)
Q Consensus 194 ~~~ly~~v~In--g~~v~alVDTGA~~s~is~~~a--~~lgl~~~~~~~----------~~~~~~g~g~~~~~g~i~~~~ 259 (410)
-...|+++.|+ ++++.+++|||+..+.+...-+ ..|+.....+.. ...+..|-|. +.|.+....
T Consensus 136 d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs--~~G~~~~Dt 213 (451)
T 3qvc_A 136 NVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGT--ISGIFSKDL 213 (451)
T ss_dssp CEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCE--EEEEEEEEE
Confidence 45689999999 8999999999999888754322 344432222211 1122344444 789999999
Q ss_pred EEEcCEEEEEEEEEecC----------CCCceeeechh
Q 015264 260 IKIGNVFYPCSFVVLDS----------PNMEFLFGLDM 287 (410)
Q Consensus 260 l~ig~~~~~~~~~Vl~~----------~~~d~iLG~D~ 287 (410)
|.+|+..++..|-+... ...|+||||-+
T Consensus 214 v~igg~~v~~~Fg~a~~t~~~~~~f~~~~~dGILGLg~ 251 (451)
T 3qvc_A 214 VTIGKLSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGW 251 (451)
T ss_dssp EEETTEEEEEEEEEEEEEEECTTHHHHSCCCEEEECSS
T ss_pred EEECCEEEEEEEEEEEeccccCCCccCCCCCEEEecCC
Confidence 99999777766665543 35799999975
No 186
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=94.99 E-value=0.012 Score=51.51 Aligned_cols=41 Identities=15% Similarity=0.355 Sum_probs=34.4
Q ss_pred HHHHHHHhcCHHHHHHHhh----cCHHHHHHhccCCHHHHHHHHHH
Q 015264 94 AAFQQHIRNDANLMTQLFQ----SDPELAQVLLGNDLNKLQDLLRE 135 (410)
Q Consensus 94 ~~~~~~~~~nP~~l~~l~~----~nP~L~~ai~~~~~~~~~~~l~~ 135 (410)
..||+.+.+||+++..|.+ +||+|.+.|. .|++.|.++|..
T Consensus 36 ~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~-qNqe~Fl~mLne 80 (171)
T 2qsf_X 36 LSLRQVVSGNPEALAPLLENISARYPQLREHIM-ANPEVFVSMLLE 80 (171)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHH-HCHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHH-HCHHHHHHHHhC
Confidence 5689999999998766666 9999999996 689999888864
No 187
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=94.89 E-value=0.019 Score=49.27 Aligned_cols=35 Identities=37% Similarity=0.433 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHhCCCHHHHHHhh
Q 015264 373 EAKVAKLVELGF-GREAVIQALKLFDGNEEQAAGFL 407 (410)
Q Consensus 373 e~~i~~l~~mGf-~r~~~~~aL~~~~~n~~~A~~~l 407 (410)
..+++.|++.|| +++++++||++++||++.|...|
T Consensus 103 ~~K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eL 138 (162)
T 4dbg_B 103 RRKVQELQSLGFGPEEGSLQALFQHGGDVSRALTEL 138 (162)
T ss_dssp HHHHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHH
Confidence 568999999995 89999999999999999999876
No 188
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=94.89 E-value=0.019 Score=41.49 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=30.9
Q ss_pred HHHHHHHhcCHHHHH----HHhhcCHHHHHHhccCCHHHHHHHH
Q 015264 94 AAFQQHIRNDANLMT----QLFQSDPELAQVLLGNDLNKLQDLL 133 (410)
Q Consensus 94 ~~~~~~~~~nP~~l~----~l~~~nP~L~~ai~~~~~~~~~~~l 133 (410)
..+|+.+.+||+++. +|..+||+|.+.|. .|++.|-+++
T Consensus 14 ~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~-~n~e~Fl~ll 56 (61)
T 2f4m_B 14 QQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS-QHQEHFIQML 56 (61)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHH-HSHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHH-HCHHHHHHHH
Confidence 568899999998855 45568999999996 5888887766
No 189
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=94.82 E-value=0.14 Score=39.81 Aligned_cols=68 Identities=24% Similarity=0.276 Sum_probs=44.0
Q ss_pred EEeEecCEeEEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEEEEEEEE
Q 015264 199 VDMEVNGIPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPCSFVV 273 (410)
Q Consensus 199 ~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~~~~~V 273 (410)
+.++|.|.++++.-||||++|+|...+.+. +..+.+.......| +..-.+.-+.++|.|..+.+.+.-
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~~---E~PI~~~~I~TIHG----~k~q~vYYl~fKv~GRKveaEVi~ 77 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLED---ERPIQTMLIKTIHG----EKQQDVYYLTFKVQGRKVEAEVLA 77 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTTT---CCCSEEEEEECSSC----EEEEEEEEEEEEESSCEEEEEEEE
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhcc---cccccceEEEEecC----ceeceEEEEEEEEcCeEEEEEEec
Confidence 678999999999999999999999887432 11111111111122 333345556889999877665543
No 190
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.61 E-value=0.072 Score=39.56 Aligned_cols=42 Identities=14% Similarity=0.416 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 369 GADFEAKVAKLVEL--GFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 369 ~~~~e~~i~~l~~m--Gf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
+..-++.|.++.++ -+....+.++|...++|+|++++.||.+
T Consensus 10 ~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 10 GVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp SHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 45668899999997 7999999999999999999999999965
No 191
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=94.59 E-value=0.22 Score=36.70 Aligned_cols=61 Identities=23% Similarity=0.396 Sum_probs=45.9
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
|+|+|.-.. ....++++...||.+|.+.+ ++++....+..||..+..+. -+++||.|.+..
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEE
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEe
Confidence 566666532 23456888889999998876 56777777889999987654 588999998874
No 192
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=94.35 E-value=0.028 Score=51.28 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=27.8
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHhCCCH
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLFDGNE 400 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~ 400 (410)
..+++|++|++|||+++.|+.||..+|||.
T Consensus 168 ~~~~~v~~~~~mg~~~~~~~~al~~~~~~~ 197 (215)
T 1tte_A 168 IDHDLIDEFESQGFEKDKIVEVLRRLGVKS 197 (215)
T ss_dssp CSHHHHHHHHHHTCCHHHHHHHHHHSCCSS
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHcCCCc
Confidence 457899999999999999999999999986
No 193
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.23 E-value=0.095 Score=40.15 Aligned_cols=67 Identities=15% Similarity=0.327 Sum_probs=56.4
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEe---CCeecCCCCcccccCCCCCCeEEEEe
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLY---NGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~---~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
++.|.....+...+.|++..++.+|--.|.+++.+.|+...|.. .+..|+-+++|.+|||++ |+.+.
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d 81 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMD 81 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheec
Confidence 45566666777888999999999999999999999999988874 456788899999999997 66553
No 194
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=93.96 E-value=0.2 Score=49.29 Aligned_cols=92 Identities=21% Similarity=0.457 Sum_probs=60.8
Q ss_pred eeEEEEEeEec--CEeEEEeecCCCcccccCH-HHH-HHcCCcccccc----ce------eeEeeCCCcceeeeEEEEEe
Q 015264 194 VVMLYVDMEVN--GIPLKAFVDSGAQSTIISK-SCA-ERCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAP 259 (410)
Q Consensus 194 ~~~ly~~v~In--g~~v~alVDTGA~~s~is~-~~a-~~lgl~~~~~~----~~------~~~~~g~g~~~~~g~i~~~~ 259 (410)
-...|+++.|+ ++++.+++|||+..+.+.. .|. ..|+.....+. .+ ..+..|-|. +.|.+....
T Consensus 61 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dt 138 (375)
T 1miq_A 61 NIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT--VKGFFSKDL 138 (375)
T ss_dssp CEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCe--EEEEEEEEE
Confidence 34678899998 8999999999999987743 331 13332112221 11 123344444 679998999
Q ss_pred EEEcCEEEEEEEEEecC----------CCCceeeechh
Q 015264 260 IKIGNVFYPCSFVVLDS----------PNMEFLFGLDM 287 (410)
Q Consensus 260 l~ig~~~~~~~~~Vl~~----------~~~d~iLG~D~ 287 (410)
|.||+..++-.|-+... ...|+||||-+
T Consensus 139 v~ig~~~v~~~Fg~~~~~~~~~~~f~~~~~dGilGLg~ 176 (375)
T 1miq_A 139 VTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGW 176 (375)
T ss_dssp EEETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSS
T ss_pred EEEcCceECcEEEEEEeccccccccccCCCceEEeCCC
Confidence 99999766546655543 46799999975
No 195
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.79 E-value=0.34 Score=39.17 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=45.8
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHh--CCC------cCCeEEEe----CCeecCCC-------------CcccccCCCCC
Q 015264 10 EQIISLDVDPHETVENVKALLEVET--QVP------LQQQQLLY----NGREMNNA-------------EKLSALGVKDE 64 (410)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~--gip------~~~q~Li~----~Gk~L~d~-------------~tL~~~gI~~g 64 (410)
+..+.+.|-..+||.++|++|-... |.| ++++.|-+ .|++|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4557788889999999999997764 333 34666765 35667651 37999999999
Q ss_pred CeEEEEec
Q 015264 65 DLVMMVSN 72 (410)
Q Consensus 65 ~~i~l~~~ 72 (410)
++|-+++.
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988753
No 196
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=93.57 E-value=0.22 Score=49.12 Aligned_cols=92 Identities=16% Similarity=0.352 Sum_probs=61.6
Q ss_pred eeEEEEEeEec--CEeEEEeecCCCcccccC-HHHH---HHcCCccccccc----e------eeEeeCCCcceeeeEEEE
Q 015264 194 VVMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA---ERCGLLRLLDDR----Y------RGVAHGVGQSEILGRIHV 257 (410)
Q Consensus 194 ~~~ly~~v~In--g~~v~alVDTGA~~s~is-~~~a---~~lgl~~~~~~~----~------~~~~~g~g~~~~~g~i~~ 257 (410)
-...|+++.|+ .+++++++|||++..-+. ..|. ..|......+.. + ..+..|-|. +.|.+-.
T Consensus 60 ~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~ 137 (383)
T 2x0b_A 60 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLSQ 137 (383)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEE
T ss_pred CCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCcc--EEEEEEe
Confidence 45788999998 789999999999988764 3342 244332222211 1 123445454 6799999
Q ss_pred EeEEEcCEEEEEEEEEec--------CCCCceeeechh
Q 015264 258 APIKIGNVFYPCSFVVLD--------SPNMEFLFGLDM 287 (410)
Q Consensus 258 ~~l~ig~~~~~~~~~Vl~--------~~~~d~iLG~D~ 287 (410)
..|.||+..++..|-+.. ....|+||||-+
T Consensus 138 Dtv~ig~~~v~~~Fg~a~~~~g~~f~~~~~dGIlGLg~ 175 (383)
T 2x0b_A 138 DIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 175 (383)
T ss_dssp EEEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred eEEEEcCceEEEEEEEEEecCCcccccCCCceEeccCC
Confidence 999999977665555543 235799999975
No 197
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=93.30 E-value=0.17 Score=38.86 Aligned_cols=45 Identities=13% Similarity=0.282 Sum_probs=39.5
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG 47 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~G 47 (410)
|+|+|.+. .++.|.|+.+.+..+|+++|.++++++++...|.|.-
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 45666663 7899999999999999999999999999999999964
No 198
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=93.27 E-value=0.21 Score=48.09 Aligned_cols=90 Identities=14% Similarity=0.245 Sum_probs=59.0
Q ss_pred EEEEEeEecCEeEEEeecCCCcccccC-HHHH-HHc--CCccccccc---e------eeEeeCCCcceeeeEEEEEeEEE
Q 015264 196 MLYVDMEVNGIPLKAFVDSGAQSTIIS-KSCA-ERC--GLLRLLDDR---Y------RGVAHGVGQSEILGRIHVAPIKI 262 (410)
Q Consensus 196 ~ly~~v~Ing~~v~alVDTGA~~s~is-~~~a-~~l--gl~~~~~~~---~------~~~~~g~g~~~~~g~i~~~~l~i 262 (410)
..|+++.|+++++++++|||+..+-+. ..|. ..| ......+.. + ..+..|-|. ..|.+....|.|
T Consensus 18 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~ST~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~i 95 (330)
T 1yg9_A 18 QYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGS--AVGRGIEDSLTI 95 (330)
T ss_dssp TSEEEEEETTEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSCEEEEEEEEEEEETTTEE--EEEEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCCceEECCCEEEEEECCce--EEEEEEEEEEEE
Confidence 568899999999999999999988764 4442 245 322222211 1 112233333 488898889999
Q ss_pred cCEEEE-EEEEEecC-------CCCceeeechh
Q 015264 263 GNVFYP-CSFVVLDS-------PNMEFLFGLDM 287 (410)
Q Consensus 263 g~~~~~-~~~~Vl~~-------~~~d~iLG~D~ 287 (410)
|+..++ ..|-+... ...|.||||-+
T Consensus 96 g~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~ 128 (330)
T 1yg9_A 96 SQLTTSQQDIVLADELSQEVCILSADVVVGIAA 128 (330)
T ss_dssp TTEEEEEEEEEEEEEECTHHHHTTCSEEEECSC
T ss_pred CCEEEcCeEEEEEEEcccccccccCceEEEcCc
Confidence 996654 55655542 24799999876
No 199
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=93.24 E-value=0.35 Score=47.36 Aligned_cols=92 Identities=11% Similarity=0.254 Sum_probs=60.1
Q ss_pred eeEEEEEeEec--CEeEEEeecCCCcccccCHHHHH--HcCCcccccc----c------eeeEeeCCCcceeeeEEEEEe
Q 015264 194 VVMLYVDMEVN--GIPLKAFVDSGAQSTIISKSCAE--RCGLLRLLDD----R------YRGVAHGVGQSEILGRIHVAP 259 (410)
Q Consensus 194 ~~~ly~~v~In--g~~v~alVDTGA~~s~is~~~a~--~lgl~~~~~~----~------~~~~~~g~g~~~~~g~i~~~~ 259 (410)
-...|+++.|+ .+++++++|||+...-+....+. .|......+. . ...+..|-|. ..|.+....
T Consensus 55 d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dt 132 (370)
T 3psg_A 55 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGS--MTGILGYDT 132 (370)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCE--EEEEEEEEE
T ss_pred CCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCce--EEEEEEEEE
Confidence 44688999998 58999999999998877533222 2332111211 1 1122344444 689998899
Q ss_pred EEEcCEEEE-EEEEEecCC--------CCceeeechh
Q 015264 260 IKIGNVFYP-CSFVVLDSP--------NMEFLFGLDM 287 (410)
Q Consensus 260 l~ig~~~~~-~~~~Vl~~~--------~~d~iLG~D~ 287 (410)
|.||+..++ ..|-+.... ..|+||||-+
T Consensus 133 v~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~ 169 (370)
T 3psg_A 133 VQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY 169 (370)
T ss_dssp EEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred EeeCCcccCCeEEEEEEeecccccccCCccceeccCC
Confidence 999997765 666666422 3799999974
No 200
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=93.17 E-value=0.41 Score=40.16 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=47.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHh--CCCc------CCeEEEe----CCe-ecCCC-------------CcccccCCCCC
Q 015264 11 QIISLDVDPHETVENVKALLEVET--QVPL------QQQQLLY----NGR-EMNNA-------------EKLSALGVKDE 64 (410)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~--gip~------~~q~Li~----~Gk-~L~d~-------------~tL~~~gI~~g 64 (410)
..+.+.|=..+||.++|++|-... |+|- ++.-|-+ .|+ +|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 457888889999999999998774 4443 4555654 344 36653 28999999999
Q ss_pred CeEEEEecCCC
Q 015264 65 DLVMMVSNAAS 75 (410)
Q Consensus 65 ~~i~l~~~~~~ 75 (410)
++|-++++...
T Consensus 121 a~l~l~~~~~~ 131 (138)
T 2r2o_A 121 ATVALVPCLTK 131 (138)
T ss_dssp CEEEEEEC---
T ss_pred CEEEEEECCCc
Confidence 99999977543
No 201
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=93.14 E-value=0.23 Score=47.57 Aligned_cols=93 Identities=14% Similarity=0.183 Sum_probs=59.5
Q ss_pred eeEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcCC--cccccc---------ceeeEeeCCCcceeeeEEEEEeEEE
Q 015264 194 VVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCGL--LRLLDD---------RYRGVAHGVGQSEILGRIHVAPIKI 262 (410)
Q Consensus 194 ~~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lgl--~~~~~~---------~~~~~~~g~g~~~~~g~i~~~~l~i 262 (410)
-...|+++.|+++++.+++|||+..+-+...-+..|.+ ....+. ....+..|-|. .+.|.+....|.+
T Consensus 14 ~~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~i 92 (323)
T 1bxo_A 14 DEEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGS-SASGNVFTDSVTV 92 (323)
T ss_dssp GSCEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHCEEEEEEEEEEECTTSC-EEEEEEEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCCcccCCCeEEEEeCCCC-eEEEEEEEEEEEE
Confidence 34578899999999999999999998775432222321 111111 01112233332 4678888889999
Q ss_pred cCEEEE-EEEEEecC--------CCCceeeechh
Q 015264 263 GNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 263 g~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
|+..++ ..|-+... ...|.||||-+
T Consensus 93 g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 126 (323)
T 1bxo_A 93 GGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAF 126 (323)
T ss_dssp TTEEEEEEEEEEEEEECHHHHTCTTCSEEEECSC
T ss_pred CCEEECcEEEEEEEecCcccccCCCCceEEEeCc
Confidence 996654 55655541 46799999876
No 202
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=93.04 E-value=0.23 Score=50.31 Aligned_cols=92 Identities=22% Similarity=0.405 Sum_probs=61.1
Q ss_pred eeEEEEEeEec--CEeEEEeecCCCcccccCH-HHH-HHcCCcccccc----c------eeeEeeCCCcceeeeEEEEEe
Q 015264 194 VVMLYVDMEVN--GIPLKAFVDSGAQSTIISK-SCA-ERCGLLRLLDD----R------YRGVAHGVGQSEILGRIHVAP 259 (410)
Q Consensus 194 ~~~ly~~v~In--g~~v~alVDTGA~~s~is~-~~a-~~lgl~~~~~~----~------~~~~~~g~g~~~~~g~i~~~~ 259 (410)
-...|+++.|+ ++++.+++|||++.+-+.. .|. ..|+.....+. . ...+..|-|. +.|.+-...
T Consensus 137 ~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs--~~G~~~~Dt 214 (453)
T 2bju_A 137 NIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGT--VSGFFSKDL 214 (453)
T ss_dssp TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCC--eEEEEEEEE
Confidence 34788999999 8999999999999987743 332 12322111211 1 1123445554 679999999
Q ss_pred EEEcCEEEEEEEEEecC----------CCCceeeechh
Q 015264 260 IKIGNVFYPCSFVVLDS----------PNMEFLFGLDM 287 (410)
Q Consensus 260 l~ig~~~~~~~~~Vl~~----------~~~d~iLG~D~ 287 (410)
|.+|+..++..|-+... ...|+||||-+
T Consensus 215 v~ig~~~v~~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~ 252 (453)
T 2bju_A 215 VTVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGW 252 (453)
T ss_dssp EEETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred EEEeCcEEEEEEEEEEEecccCccccccCCceeEeccC
Confidence 99999776666655542 24799999975
No 203
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=92.96 E-value=0.25 Score=47.31 Aligned_cols=93 Identities=16% Similarity=0.151 Sum_probs=59.5
Q ss_pred eeEEEEEeEecCEeEEEeecCCCcccccCHHHHHHc--CCcccccc-c--e------eeEeeCCCcceeeeEEEEEeEEE
Q 015264 194 VVMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERC--GLLRLLDD-R--Y------RGVAHGVGQSEILGRIHVAPIKI 262 (410)
Q Consensus 194 ~~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~l--gl~~~~~~-~--~------~~~~~g~g~~~~~g~i~~~~l~i 262 (410)
....|+++.|+++++++++|||+..+-+...-+..| ......+. . + ..+..|-| ....|.+....|.|
T Consensus 14 ~~~Y~~~i~iG~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~G-s~~~G~~~~D~v~i 92 (323)
T 1izd_A 14 DEEYITQVTVGDDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSAQKIDGATWSISYGDG-SSASGDVYKDKVTV 92 (323)
T ss_dssp GCCEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTCEEEEEEEEEEECTTS-CEEEEEEEEEEEEE
T ss_pred CCEEEEEEEECCEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccCCccCCCeEEEEcCCC-CeEEEEEEEEEEEE
Confidence 345788999999999999999999988754322222 11111111 1 1 11222333 24678888889999
Q ss_pred cCEEEE-EEEEEecC--------CCCceeeechh
Q 015264 263 GNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 263 g~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
|+..++ ..|-+... ...|.||||-+
T Consensus 93 g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 126 (323)
T 1izd_A 93 GGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAF 126 (323)
T ss_dssp TTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred CCEEECceEEEEEEeccccccccCCCceEEecCc
Confidence 996664 55655542 46799999876
No 204
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=92.91 E-value=0.31 Score=46.56 Aligned_cols=91 Identities=11% Similarity=0.276 Sum_probs=59.3
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccC-HHHH-HHcCCcccccc----ce------eeEeeCCCcceeeeEEEEEeE
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA-ERCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAPI 260 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is-~~~a-~~lgl~~~~~~----~~------~~~~~g~g~~~~~g~i~~~~l 260 (410)
...|+++.|+ ++++++++|||+..+-+. ..|. ..|+.....+. .+ ..+..|-|. ..|.+-...|
T Consensus 14 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v 91 (323)
T 3cms_A 14 SQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS--MQGILGYDTV 91 (323)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCC--eEEEEEEEEE
Confidence 4678899998 789999999999988774 3331 33432111211 11 123345454 6798988899
Q ss_pred EEcCEEEE-EEEEEecC--------CCCceeeechh
Q 015264 261 KIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 261 ~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
.||+..++ ..|-+... ...|.||||-+
T Consensus 92 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 127 (323)
T 3cms_A 92 TVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAY 127 (323)
T ss_dssp EETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSC
T ss_pred EECCeEEeccEEEEEEecccccccccCCceEEecCc
Confidence 99996654 56655542 25799999864
No 205
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.77 E-value=0.4 Score=43.94 Aligned_cols=60 Identities=8% Similarity=0.247 Sum_probs=49.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCcC-CeEEEe-C----CeecCC-CCcccccCCCCCCeEEEEec
Q 015264 13 ISLDVDPHETVENVKALLEVETQVPLQ-QQQLLY-N----GREMNN-AEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~gip~~-~q~Li~-~----Gk~L~d-~~tL~~~gI~~g~~i~l~~~ 72 (410)
+++.++...||.+|++.+...++++++ +.||.. . ...|.| +.||.+++|.+|+.|.+-.+
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r 220 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ 220 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence 556779999999999999999999997 689863 3 245666 48999999999999988644
No 206
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=92.67 E-value=0.41 Score=46.33 Aligned_cols=92 Identities=12% Similarity=0.240 Sum_probs=60.5
Q ss_pred eeEEEEEeEec--CEeEEEeecCCCcccccC-HHHH-HHcCCcccccc----------ceeeEeeCCCcceeeeEEEEEe
Q 015264 194 VVMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA-ERCGLLRLLDD----------RYRGVAHGVGQSEILGRIHVAP 259 (410)
Q Consensus 194 ~~~ly~~v~In--g~~v~alVDTGA~~s~is-~~~a-~~lgl~~~~~~----------~~~~~~~g~g~~~~~g~i~~~~ 259 (410)
-...|+++.|+ ++++++++|||+..+-+. ..|. ..|+.....+. ....+..|-|. ..|.+....
T Consensus 22 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~ 99 (351)
T 1tzs_A 22 DMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS--LSGIIGADQ 99 (351)
T ss_dssp SSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEEEEeCCCC--eEEEEEEeE
Confidence 34578899998 789999999999998774 3332 14443222221 11123345454 579998999
Q ss_pred EEEcCEEEE-EEEEEecC--------CCCceeeechh
Q 015264 260 IKIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 260 l~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
|.||+..++ ..|-+... ...|+||||-+
T Consensus 100 v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 136 (351)
T 1tzs_A 100 VSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGY 136 (351)
T ss_dssp EEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred EEECCeEECCeEEEEEEeccccccccCCCceEEecCC
Confidence 999997664 56666542 24699999975
No 207
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=92.62 E-value=0.33 Score=46.50 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=58.4
Q ss_pred eEEEEEeEecCEeEEEeecCCCcccccCHHHHHHcC--Ccccccc-c--------eeeEeeCCCcceeeeEEEEEeEEEc
Q 015264 195 VMLYVDMEVNGIPLKAFVDSGAQSTIISKSCAERCG--LLRLLDD-R--------YRGVAHGVGQSEILGRIHVAPIKIG 263 (410)
Q Consensus 195 ~~ly~~v~Ing~~v~alVDTGA~~s~is~~~a~~lg--l~~~~~~-~--------~~~~~~g~g~~~~~g~i~~~~l~ig 263 (410)
...|+++.|+++++++++|||+..+-+...-+..|. -....+. . ...+..|-| ..+.|.+....|.+|
T Consensus 14 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~G-s~~~G~~~~D~v~ig 92 (325)
T 1ibq_A 14 EEYLTPVTVGKSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSATKLSGYSWDISYGDG-SSASGDVYRDTVTVG 92 (325)
T ss_dssp SCEEEEEEEBTEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSCEECTTCBEEEECSSS-CEEEEEEEEEEEEET
T ss_pred CEEEEEEEECCEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcCCccCCCEEEEEeCCC-CEEEEEEEEeEEEEC
Confidence 356889999999999999999999877443222221 1111111 1 111223333 246788888899999
Q ss_pred CEEEE-EEEEEecC--------CCCceeeechh
Q 015264 264 NVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 264 ~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
+..++ ..|-+... ...|.||||-+
T Consensus 93 ~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (325)
T 1ibq_A 93 GVTTNKQAVEAASKISSEFVQDTANDGLLGLAF 125 (325)
T ss_dssp TEEEEEEEEEEEEEECHHHHTSTTCCEEEECSC
T ss_pred CEEEcceEEEEEEecCccccccCCCceEEEeCc
Confidence 96654 55555541 46899999866
No 208
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.47 E-value=0.25 Score=44.90 Aligned_cols=61 Identities=10% Similarity=0.333 Sum_probs=50.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCcC-CeEEE--e-CC--eecCC-CCcccccCCCCCCeEEEEec
Q 015264 12 IISLDVDPHETVENVKALLEVETQVPLQ-QQQLL--Y-NG--REMNN-AEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 12 ~~~iev~~~~TV~~LK~~I~~~~gip~~-~q~Li--~-~G--k~L~d-~~tL~~~gI~~g~~i~l~~~ 72 (410)
.+++.++...||.+|++.+...++++++ +.||. | .+ ..|.| +.||.+++|.+|+.|.|-.+
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r 208 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK 208 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence 3567889999999999999999999997 68886 3 23 35666 47999999999999988644
No 209
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=92.43 E-value=0.55 Score=42.89 Aligned_cols=91 Identities=15% Similarity=0.388 Sum_probs=58.3
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccC-HHHH--HHcCCcccccc----ce------eeEeeCCCcceeeeEEEEEe
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA--ERCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAP 259 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is-~~~a--~~lgl~~~~~~----~~------~~~~~g~g~~~~~g~i~~~~ 259 (410)
...|+++.|+ ++++++++|||+...-+. ..|. ..|+.....+. .+ ..+..|-|. ..|.+....
T Consensus 13 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~ 90 (239)
T 1b5f_A 13 TSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGS--ITGFFSQDS 90 (239)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCc--EEEEEEEEE
Confidence 3578999999 899999999999998773 3442 23432111211 11 123345454 579998999
Q ss_pred EEEcCEEEE-EEEEEec--------CCCCceeeechh
Q 015264 260 IKIGNVFYP-CSFVVLD--------SPNMEFLFGLDM 287 (410)
Q Consensus 260 l~ig~~~~~-~~~~Vl~--------~~~~d~iLG~D~ 287 (410)
|.+|+..++ ..|.+.. ....|.||||-+
T Consensus 91 v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 127 (239)
T 1b5f_A 91 VTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSF 127 (239)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSC
T ss_pred EEECCcEEccEEEEEEEeccCccccccCcceEEecCc
Confidence 999986553 3443332 235799999865
No 210
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=92.38 E-value=0.35 Score=46.41 Aligned_cols=91 Identities=15% Similarity=0.339 Sum_probs=59.9
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccC-HHHH---HHcCCccccc----cc------eeeEeeCCCcceeeeEEEEE
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA---ERCGLLRLLD----DR------YRGVAHGVGQSEILGRIHVA 258 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is-~~~a---~~lgl~~~~~----~~------~~~~~~g~g~~~~~g~i~~~ 258 (410)
...|+++.|+ .+++++++|||+..+.+. ..|. ..|+.....+ .. ...+..|-|. +.|.+...
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D 95 (341)
T 3k1w_A 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLSQD 95 (341)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEE
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcE--EEEEEEEE
Confidence 4678999998 599999999999988774 3332 1333211111 11 1123345444 78999999
Q ss_pred eEEEcCEEEEEEEEEecC--------CCCceeeechh
Q 015264 259 PIKIGNVFYPCSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 259 ~l~ig~~~~~~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
.|.||+..+...|-+... ...|+||||-+
T Consensus 96 ~v~ig~~~v~~~fg~~~~~~~~~~~~~~~~GilGLg~ 132 (341)
T 3k1w_A 96 IITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF 132 (341)
T ss_dssp EEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred EEEECCceeeEEEEEEEEccccccccCCcceEEECCc
Confidence 999999766666666542 24699999975
No 211
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=92.25 E-value=0.44 Score=46.27 Aligned_cols=91 Identities=20% Similarity=0.362 Sum_probs=60.0
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccC-HHHH--HHcCCccccccc----e------eeEeeCCCcceeeeEEEEEe
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA--ERCGLLRLLDDR----Y------RGVAHGVGQSEILGRIHVAP 259 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is-~~~a--~~lgl~~~~~~~----~------~~~~~g~g~~~~~g~i~~~~ 259 (410)
...|+++.|+ +++++++||||+..+.+. ..|. ..|+-....+.. + ..+..|-|. +.|.+....
T Consensus 18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~ 95 (361)
T 1mpp_A 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGG--ANGIYFRDS 95 (361)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECCce--EEEEEEEEE
Confidence 4578899999 899999999999998774 3342 245432222211 1 123344454 689999999
Q ss_pred EEEcCEEEE-EEEEEec---C----------CCCceeeechh
Q 015264 260 IKIGNVFYP-CSFVVLD---S----------PNMEFLFGLDM 287 (410)
Q Consensus 260 l~ig~~~~~-~~~~Vl~---~----------~~~d~iLG~D~ 287 (410)
|.||+..++ ..|-+.. . ...|.||||-+
T Consensus 96 v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~ 137 (361)
T 1mpp_A 96 ITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAY 137 (361)
T ss_dssp EEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSC
T ss_pred EEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCC
Confidence 999986654 4555543 1 25799999975
No 212
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=92.23 E-value=0.082 Score=57.84 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=34.5
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHhCCC-HHHHHHhhhC
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLFDGN-EEQAAGFLFG 409 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~~~n-~~~A~~~l~~ 409 (410)
..++.+++|++|||++..+++||.+++|+ .+.|++|||+
T Consensus 651 ~d~~~l~~L~~mGf~~~~~~kal~~t~n~~~e~a~~wl~~ 690 (854)
T 3ihp_A 651 LDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMS 690 (854)
T ss_dssp --CHHHHHHHHHTCCHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred cCHHHHHHHHhcCCCHHHHHHHHhhcCCCchHHHhHHHhh
Confidence 45689999999999999999999999885 9999999974
No 213
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=91.78 E-value=0.51 Score=45.20 Aligned_cols=92 Identities=13% Similarity=0.131 Sum_probs=58.8
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccCHHHHHHcCC--cccccc-----------ceeeEeeCCCcceeeeEEEEEe
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKSCAERCGL--LRLLDD-----------RYRGVAHGVGQSEILGRIHVAP 259 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is~~~a~~lgl--~~~~~~-----------~~~~~~~g~g~~~~~g~i~~~~ 259 (410)
...|+++.|+ ++++++++|||+..+-+...-+..|.. ....+. ....+..|-|. ...|.+....
T Consensus 15 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs-~~~G~~~~D~ 93 (329)
T 3c9x_A 15 SEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSATGHAIYTPSKSSTSKKVSGASWSISYGDGS-SSSGDVYTDK 93 (329)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCGGGCTTCEECTTCBEEEECTTSC-EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCccccCCCCcCCcccCcCceEcCCCeEEEEeCCCC-cEEEEEEEEE
Confidence 3567899999 899999999999998875432222311 111111 11122333332 3678888889
Q ss_pred EEEcCEEEE-EEEEEecC--------CCCceeeechh
Q 015264 260 IKIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 260 l~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
|.||+..++ ..|-+... ...|.||||-+
T Consensus 94 v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 130 (329)
T 3c9x_A 94 VTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAF 130 (329)
T ss_dssp EEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred EEECCEEEcceEEEEEEecCccccccCCCceeEEeCc
Confidence 999986654 45555531 46899999976
No 214
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=91.52 E-value=0.68 Score=44.31 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=59.5
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccCHHHHHHcCC-ccccc----ccee-------eEeeCCCcceeeeEEEEEeE
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKSCAERCGL-LRLLD----DRYR-------GVAHGVGQSEILGRIHVAPI 260 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is~~~a~~lgl-~~~~~----~~~~-------~~~~g~g~~~~~g~i~~~~l 260 (410)
...|+++.|+ ++++++++|||+...-+...-+..|.+ ....+ ..+. .+..|-| ....|.+....|
T Consensus 15 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~G-s~~~G~~~~D~v 93 (329)
T 1oew_A 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTIYTPSKSTTAKLLSGATWSISYGDG-SSSSGDVYTDTV 93 (329)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC-CCCBCGGGCTTCEEEEEEEEEEECTTS-CEEEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCccccccCccCCccCccceecCCCeEEEEeCCC-CcEEEEEEEEEE
Confidence 3568899999 899999999999998875443333422 11111 1111 1223333 246788888899
Q ss_pred EEcCEEEE-EEEEEecC--------CCCceeeechh
Q 015264 261 KIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 261 ~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
.+|+..++ ..|-+... ...|+||||-+
T Consensus 94 ~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 129 (329)
T 1oew_A 94 SVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAF 129 (329)
T ss_dssp EETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred EECCEEEeeeEEEEEEecCccccccCCCceEEEecc
Confidence 99996654 55555541 46799999966
No 215
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=91.47 E-value=0.44 Score=45.30 Aligned_cols=91 Identities=12% Similarity=0.276 Sum_probs=58.6
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccCHHHHH--HcCCccccc----cce------eeEeeCCCcceeeeEEEEEeE
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKSCAE--RCGLLRLLD----DRY------RGVAHGVGQSEILGRIHVAPI 260 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is~~~a~--~lgl~~~~~----~~~------~~~~~g~g~~~~~g~i~~~~l 260 (410)
...|+++.|+ .+++++++|||+..+.+...-+. .|......+ ..+ ..+..|-|. ..|.+....|
T Consensus 11 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~v 88 (320)
T 4aa9_A 11 SQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS--MEGFLGYDTV 88 (320)
T ss_dssp CCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcE--EEEEEEEEEE
Confidence 3578999998 69999999999998887432111 122111111 111 123345444 6899999999
Q ss_pred EEcCEEEE-EEEEEecC--------CCCceeeechh
Q 015264 261 KIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 261 ~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
.+|+..++ ..|-+... ...|+||||-+
T Consensus 89 ~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 124 (320)
T 4aa9_A 89 TVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAY 124 (320)
T ss_dssp EETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSC
T ss_pred EECCEeecCeEEEEEEEcccccccccCcccEEecCc
Confidence 99997664 56655542 24699999974
No 216
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=91.11 E-value=0.55 Score=45.14 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=57.0
Q ss_pred EEEEEeEec--CEeEEEeecCCCcccccCHHHHHHcCCccc--cccceeeEeeCCCcceeeeEEEEEeEEEcCEEEE-EE
Q 015264 196 MLYVDMEVN--GIPLKAFVDSGAQSTIISKSCAERCGLLRL--LDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP-CS 270 (410)
Q Consensus 196 ~ly~~v~In--g~~v~alVDTGA~~s~is~~~a~~lgl~~~--~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~-~~ 270 (410)
..|+++.|+ ++++++++|||+..+-+... .+..-..- .......+..|-|. ..|.+....|.||+..++ ..
T Consensus 13 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~~s~Ss~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~~g~~~v~~~~ 88 (340)
T 1wkr_A 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYVKTSTSSATSDKVSVTYGSGS--FSGTEYTDTVTLGSLTIPKQS 88 (340)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCCCCTTCEEEEEEEEEECSSCE--EEEEEEEEEEEETTEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCChhheecCC--CccCCcCCccccCceEEEEECCcE--EEEEEEEEEEEECCEEEcceE
Confidence 578999999 89999999999999887532 11111000 00001123445554 679999999999996553 55
Q ss_pred EEEecC----CCCceeeechh
Q 015264 271 FVVLDS----PNMEFLFGLDM 287 (410)
Q Consensus 271 ~~Vl~~----~~~d~iLG~D~ 287 (410)
|-+... ...|.||||-+
T Consensus 89 fg~~~~~~~~~~~~GilGLg~ 109 (340)
T 1wkr_A 89 IGVASRDSGFDGVDGILGVGP 109 (340)
T ss_dssp EEEEEEEESCTTCSEEEECSC
T ss_pred EEEEEccCCCcCCCcEEECCc
Confidence 555542 25899999965
No 217
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=91.10 E-value=0.53 Score=45.01 Aligned_cols=91 Identities=21% Similarity=0.403 Sum_probs=59.1
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccC-HHHHH-HcCCcccccc----c------eeeEeeCCCcceeeeEEEEEeE
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCAE-RCGLLRLLDD----R------YRGVAHGVGQSEILGRIHVAPI 260 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is-~~~a~-~lgl~~~~~~----~------~~~~~~g~g~~~~~g~i~~~~l 260 (410)
...|+++.|+ ++++++++|||+..+-+. ..|.. .|......+. . ...+..|-| .+.|.+....|
T Consensus 13 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G--s~~G~~~~D~v 90 (329)
T 1dpj_A 13 AQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTG--SLEGYISQDTL 90 (329)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTE--EEEEEEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECCcEEEEEECCc--eEEEEEEEEEE
Confidence 3578899998 799999999999988764 33321 1322111221 0 112344545 46799988999
Q ss_pred EEcCEEEE-EEEEEec--------CCCCceeeechh
Q 015264 261 KIGNVFYP-CSFVVLD--------SPNMEFLFGLDM 287 (410)
Q Consensus 261 ~ig~~~~~-~~~~Vl~--------~~~~d~iLG~D~ 287 (410)
.+|+..++ ..|-+.. ....|.||||-+
T Consensus 91 ~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~ 126 (329)
T 1dpj_A 91 SIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGY 126 (329)
T ss_dssp EETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSC
T ss_pred EECCeEECCeEEEEEEecCccccccCCcceEEEeCC
Confidence 99996654 4555543 235799999975
No 218
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=90.83 E-value=0.72 Score=45.07 Aligned_cols=69 Identities=10% Similarity=0.199 Sum_probs=55.9
Q ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhC----CCcCCeEEEe------CCeecCCCCcccccCCCCCCeEEEEec
Q 015264 3 ITVMTADEQIISLDVDPHETVENVKALLEVETQ----VPLQQQQLLY------NGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 3 I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~g----ip~~~q~Li~------~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
+.|... +.+.++..++++||.|....|.++.. .++++--|+. +|+=|++++||+.|++++|+.|...++
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~ 84 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKK 84 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCc
Confidence 455554 66788999999999999999988764 3677778876 456688889999999999999988743
No 219
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=90.78 E-value=0.75 Score=43.93 Aligned_cols=92 Identities=13% Similarity=0.323 Sum_probs=59.5
Q ss_pred eeEEEEEeEec--CEeEEEeecCCCcccccC-HHHH-HHcCCcccccc----ce------eeEeeCCCcceeeeEEEEEe
Q 015264 194 VVMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA-ERCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAP 259 (410)
Q Consensus 194 ~~~ly~~v~In--g~~v~alVDTGA~~s~is-~~~a-~~lgl~~~~~~----~~------~~~~~g~g~~~~~g~i~~~~ 259 (410)
....|+++.|+ ++++++++|||+..+-+. ..|. ..|+.....+. .+ ..+..|-|. ..|.+....
T Consensus 11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~ 88 (329)
T 1htr_B 11 DAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYGSGS--LTGFFGYDT 88 (329)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEE
T ss_pred CCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEECCcEEEEEeCCCC--eEEEEEeee
Confidence 34578899998 799999999999988774 3331 12322111211 11 123344444 478898999
Q ss_pred EEEcCEEEE-EEEEEecC--------CCCceeeechh
Q 015264 260 IKIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 260 l~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
|.+|+..++ ..|-+... ...|.||||-+
T Consensus 89 v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (329)
T 1htr_B 89 LTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAY 125 (329)
T ss_dssp EEETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCC
T ss_pred EEEcceEECceEEEEEEEccccccccCCCceEEecCC
Confidence 999997664 66766642 24699999864
No 220
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=90.24 E-value=2.1 Score=33.38 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=47.4
Q ss_pred CEEEEEeCC------C-CEEEEEeCCCCCHHHHHHHHHHHhC-C----------CcCCeEEEeCCeecCCCCcccccCCC
Q 015264 1 MRITVMTAD------E-QIISLDVDPHETVENVKALLEVETQ-V----------PLQQQQLLYNGREMNNAEKLSALGVK 62 (410)
Q Consensus 1 M~I~vk~~~------g-~~~~iev~~~~TV~~LK~~I~~~~g-i----------p~~~q~Li~~Gk~L~d~~tL~~~gI~ 62 (410)
|+|+|+.-. | ....++++...||.+|.+.+..... + ......+..||+.... +.-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 678888532 3 4567888888999999999987641 1 1234567789987753 45689
Q ss_pred CCCeEEEEe
Q 015264 63 DEDLVMMVS 71 (410)
Q Consensus 63 ~g~~i~l~~ 71 (410)
+||.|.+..
T Consensus 85 dGDeV~i~p 93 (98)
T 1vjk_A 85 DGDVVGVFP 93 (98)
T ss_dssp TTCEEEEES
T ss_pred CCCEEEEEC
Confidence 999998864
No 221
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=90.16 E-value=1.7 Score=41.28 Aligned_cols=100 Identities=14% Similarity=0.287 Sum_probs=59.4
Q ss_pred EeEecCEeE------EEeecCCCcccccCHHHHHHc----CCccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEEE-
Q 015264 200 DMEVNGIPL------KAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP- 268 (410)
Q Consensus 200 ~v~Ing~~v------~alVDTGA~~s~is~~~a~~l----gl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~- 268 (410)
.+.|||..+ .++||||.+.+.+..+.++.+ +........+ ...+... .....+.+.+++..+.
T Consensus 197 ~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~---~~~C~~~---~~~P~i~f~f~g~~~~i 270 (323)
T 3cms_A 197 SVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEF---DIDCDNL---SYMPTVVFEINGKMYPL 270 (323)
T ss_dssp EEEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTTEE---EECTTCT---TTSCCEEEEETTEEEEE
T ss_pred eEEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCeecCCCcE---EEECCCC---ccCceEEEEECCEEEEE
Confidence 456788654 799999999999998887765 3211000000 0011100 0112234555554442
Q ss_pred ------------EEEEEecC-CCCceeeechhhhhcceEEEccCCEEEEC
Q 015264 269 ------------CSFVVLDS-PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 269 ------------~~~~Vl~~-~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
|-+.+... .+...|||-.||+.+-.++|+.+++|-|.
T Consensus 271 ~~~~y~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA 320 (323)
T 3cms_A 271 TPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLA 320 (323)
T ss_dssp CHHHHEEEETTEEEESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred CHHHhccCCCCEEEEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEE
Confidence 33223332 23568999999999999999999999885
No 222
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=89.88 E-value=0.99 Score=43.20 Aligned_cols=92 Identities=20% Similarity=0.304 Sum_probs=59.9
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccCHH---HH--------HHcCCcccccc----cee------eEeeCCCccee
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKS---CA--------ERCGLLRLLDD----RYR------GVAHGVGQSEI 251 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is~~---~a--------~~lgl~~~~~~----~~~------~~~~g~g~~~~ 251 (410)
...|+++.|+ .+++++++|||+..+-+... |. ..|.-....+. .+. .+..|-| ...
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~ 90 (342)
T 3pvk_A 12 VTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDG-SSS 90 (342)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECSSS-CEE
T ss_pred cEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEEEEecCC-CeE
Confidence 3578999998 79999999999999887432 31 22322111211 111 1223333 247
Q ss_pred eeEEEEEeEEEcCEEEE-EEEEEec-CCCCceeeechh
Q 015264 252 LGRIHVAPIKIGNVFYP-CSFVVLD-SPNMEFLFGLDM 287 (410)
Q Consensus 252 ~g~i~~~~l~ig~~~~~-~~~~Vl~-~~~~d~iLG~D~ 287 (410)
.|.+....|.||+..++ ..|-+.. ....|+||||-+
T Consensus 91 ~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~GilGLg~ 128 (342)
T 3pvk_A 91 QGTLYKDTVGFGGVSIKNQVLADVDSTSIDQGILGVGY 128 (342)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEEEEEEEECCEEecceEEEEEEccCCCccEEEecC
Confidence 88888999999997664 5666664 346899999975
No 223
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=89.84 E-value=0.13 Score=36.13 Aligned_cols=39 Identities=5% Similarity=0.037 Sum_probs=30.6
Q ss_pred ChHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 371 DFEAKVAKLVEL--GFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 371 ~~e~~i~~l~~m--Gf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
+.++.+++|.+| .++++-....|++.+||.+.|++.|+.
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 457889999999 899999999999999999999999874
No 224
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=89.49 E-value=1.3 Score=32.67 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=44.7
Q ss_pred CEEEEEeCCC-CEEEEEeCCCCCHHHHHHHHHHHhCCCc--CCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 1 MRITVMTADE-QIISLDVDPHETVENVKALLEVETQVPL--QQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 1 M~I~vk~~~g-~~~~iev~~~~TV~~LK~~I~~~~gip~--~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
|+|+|+.... +.-.+++ ...||.+|.+.+....++.. ....+.-||+.+.+. +.-+++||.|.+..
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~----~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL----NTPLKDGDVISLLP 69 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT----TCCCCTTCEEEEEC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC----CcCCCCCCEEEEEC
Confidence 8899986531 1024666 67899999999986533322 445667788875532 34689999999874
No 225
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=89.41 E-value=2.1 Score=38.69 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=57.8
Q ss_pred EeEecCEe------EEEeecCCCcccccCHHHHHHc----CCccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEE--
Q 015264 200 DMEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFY-- 267 (410)
Q Consensus 200 ~v~Ing~~------v~alVDTGA~~s~is~~~a~~l----gl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~-- 267 (410)
.+.|||.. ..++||||.+.+.+..+.++++ +........+...+... .....+.+.+++..+
T Consensus 107 ~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~~~C~~~------~~~p~i~f~f~g~~~~l 180 (241)
T 1lya_B 107 QVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPCEKV------STLPAITLKLGGKGYKL 180 (241)
T ss_dssp EEEETTSCEESTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEEETTEEEEEGGGG------GGSCCEEEEETTEEEEE
T ss_pred EEEECCeeEeccCCCEEEEECCCccccCCHHHHHHHHHHhCCeeccCCcEEEECCCC------ccCCeEEEEECCEEEEE
Confidence 35567754 5799999999999999888765 22110000000001000 001122333444222
Q ss_pred ---------------EEEEEEecC-----CCCceeeechhhhhcceEEEccCCEEEEC
Q 015264 268 ---------------PCSFVVLDS-----PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 268 ---------------~~~~~Vl~~-----~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
.|-+.+... .....|||-.||+.+-.++|+.+++|-|.
T Consensus 181 ~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA 238 (241)
T 1lya_B 181 SPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFA 238 (241)
T ss_dssp CTTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred CHHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEEEEECCCCEEEEE
Confidence 132223221 24568999999999999999999999885
No 226
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=89.35 E-value=0.7 Score=44.04 Aligned_cols=91 Identities=16% Similarity=0.331 Sum_probs=57.5
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccCH-HHH-HHcCCccccc----cce------eeEeeCCCcceeeeEEEEEeE
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISK-SCA-ERCGLLRLLD----DRY------RGVAHGVGQSEILGRIHVAPI 260 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is~-~~a-~~lgl~~~~~----~~~------~~~~~g~g~~~~~g~i~~~~l 260 (410)
...|+++.|+ ++++++++|||+..+-+.. .|. ..|+.....+ ..+ ..+..|-|. ..|.+-...|
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v 89 (324)
T 1am5_A 12 TEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGG--MRGILGQDTV 89 (324)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeCCcEEEEEECCCC--eEEEEEECce
Confidence 3678899998 6899999999999887743 331 1232211121 111 122344443 4788888899
Q ss_pred EEcCEEEE-EEEEEecC--------CCCceeeechh
Q 015264 261 KIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 261 ~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
.+|+..++ ..|-+... ...|+||||-+
T Consensus 90 ~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~ 125 (324)
T 1am5_A 90 SVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAY 125 (324)
T ss_dssp ESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSC
T ss_pred eECCcEEcccEEEEEEecccccccCCCCceEEecCC
Confidence 99985543 55555431 35799999875
No 227
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=89.30 E-value=1.2 Score=42.40 Aligned_cols=92 Identities=18% Similarity=0.322 Sum_probs=58.0
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccCHHHHHHc-CCccccccc----e------eeEeeCCCcceeeeEEEEEeEE
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKSCAERC-GLLRLLDDR----Y------RGVAHGVGQSEILGRIHVAPIK 261 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is~~~a~~l-gl~~~~~~~----~------~~~~~g~g~~~~~g~i~~~~l~ 261 (410)
...|+++.|+ ++++.+++|||+..+-+...-+..| .-....+.. + ..+..|-| ..+.|.+....|.
T Consensus 15 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~G-s~~~G~~~~D~v~ 93 (325)
T 2apr_A 15 IEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDG-SSASGILAKDNVN 93 (325)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSCCTTSCCBCGGGCTTCEEEEEEEEEECTTS-CEEEEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchHhcCCCCCCcccCCCeeeCCCEEEEEECCC-CCEEEEEEEEEEE
Confidence 3578999999 9999999999999987754332333 111112210 1 11223322 2467888888999
Q ss_pred EcCEEEE-EEEEEec-------CCCCceeeechh
Q 015264 262 IGNVFYP-CSFVVLD-------SPNMEFLFGLDM 287 (410)
Q Consensus 262 ig~~~~~-~~~~Vl~-------~~~~d~iLG~D~ 287 (410)
+|+..++ ..|-+.. ....|.||||-+
T Consensus 94 ~g~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~ 127 (325)
T 2apr_A 94 LGGLLIKGQTIELAKREAASFASGPNDGLLGLGF 127 (325)
T ss_dssp ETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSC
T ss_pred ECCEEECcEEEEEEeccCcccccCCCceEEEeCC
Confidence 9986654 4554443 123899999965
No 228
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=88.98 E-value=0.55 Score=45.05 Aligned_cols=92 Identities=15% Similarity=0.239 Sum_probs=60.6
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccCHH---HHH--HcCCcccccc----cee------eEeeCCCcceeeeEEEE
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKS---CAE--RCGLLRLLDD----RYR------GVAHGVGQSEILGRIHV 257 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is~~---~a~--~lgl~~~~~~----~~~------~~~~g~g~~~~~g~i~~ 257 (410)
...|+++.|+ ++++++++|||+..+.+... |.. .|.-....+. .+. .+..|-| ....|.+..
T Consensus 12 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~~G~~~~ 90 (339)
T 3fv3_A 12 PSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDG-STSQGTWGK 90 (339)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTS-CEEEEEEEE
T ss_pred CEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCC-ceEEEEEEE
Confidence 3578999998 79999999999999888543 322 1322111211 111 1223333 367888989
Q ss_pred EeEEEcCEEEE-EEEEEec-CCCCceeeechh
Q 015264 258 APIKIGNVFYP-CSFVVLD-SPNMEFLFGLDM 287 (410)
Q Consensus 258 ~~l~ig~~~~~-~~~~Vl~-~~~~d~iLG~D~ 287 (410)
..|.+|+..++ ..|-+.. ....|.||||-+
T Consensus 91 D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~ 122 (339)
T 3fv3_A 91 DTVTINGVSITGQQIADVTQTSVDQGILGIGY 122 (339)
T ss_dssp EEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEECCEEECceEEEEEEecCCCceeEEecC
Confidence 99999997765 5666664 345799999975
No 229
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=88.08 E-value=0.88 Score=43.34 Aligned_cols=101 Identities=21% Similarity=0.257 Sum_probs=60.2
Q ss_pred EeEecCEe-----EEEeecCCCcccccCHHHHHHcCCccccccc-eee-EeeCCCcceeeeEEEEEeEEEcCEEEE----
Q 015264 200 DMEVNGIP-----LKAFVDSGAQSTIISKSCAERCGLLRLLDDR-YRG-VAHGVGQSEILGRIHVAPIKIGNVFYP---- 268 (410)
Q Consensus 200 ~v~Ing~~-----v~alVDTGA~~s~is~~~a~~lgl~~~~~~~-~~~-~~~g~g~~~~~g~i~~~~l~ig~~~~~---- 268 (410)
.+.|||.. ..++||||.+.+.+..+.++.+-- .+... ..+ ...-+... .....+.+.+++..+.
T Consensus 196 ~i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~--~~~~~~~~g~~~~~C~~~---~~~P~i~f~f~g~~~~i~~~ 270 (324)
T 1am5_A 196 GITVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMK--DIGASENQGEMMGNCASV---QSLPDITFTINGVKQPLPPS 270 (324)
T ss_dssp EEEETTEECCCCCEEEEECTTCSSEEECTTTHHHHHH--HHTCEECCCCEECCTTSS---SSSCCEEEEETTEEEEECHH
T ss_pred EEEECCceeeccCceEEEecCCccEECCHHHHHHHHH--HhCCcccCCcEEEeCCCc---ccCCcEEEEECCEEEEECHH
Confidence 35677765 579999999999999887766521 01100 000 00001100 0122334555654442
Q ss_pred ---------EEEEEecC-----CCCceeeechhhhhcceEEEccCCEEEEC
Q 015264 269 ---------CSFVVLDS-----PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 269 ---------~~~~Vl~~-----~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
|-+.+... .....|||-.||+.+-.++|+.+++|-|.
T Consensus 271 ~y~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa 321 (324)
T 1am5_A 271 AYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFA 321 (324)
T ss_dssp HHEEESSSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEE
T ss_pred HhcccCCCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEE
Confidence 33333322 23468999999999999999999999885
No 230
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=87.94 E-value=0.88 Score=35.14 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=41.1
Q ss_pred CCCEEEEEeCCC-CCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 9 DEQIISLDVDPH-ETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 9 ~g~~~~iev~~~-~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
+|+. ++++.. .||.+|.+.+ ++++....+..||+.+..+ ...+.-|++||.|-++.
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~ 82 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVH 82 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEE
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEc
Confidence 4553 556776 8999998766 5777777788999987643 23345689999998874
No 231
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=87.69 E-value=1.6 Score=44.37 Aligned_cols=92 Identities=15% Similarity=0.336 Sum_probs=59.4
Q ss_pred eeEEEEEeEec--CEeEEEeecCCCcccccC-HHHH--HHcCCcccccc----------ceeeEeeCCCcceeeeEEEEE
Q 015264 194 VVMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCA--ERCGLLRLLDD----------RYRGVAHGVGQSEILGRIHVA 258 (410)
Q Consensus 194 ~~~ly~~v~In--g~~v~alVDTGA~~s~is-~~~a--~~lgl~~~~~~----------~~~~~~~g~g~~~~~g~i~~~ 258 (410)
-...|+++.|+ ++++.+++|||++..-+. ..|. ..|......+. ....+..|-|. ..|.+...
T Consensus 51 ~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D 128 (478)
T 1qdm_A 51 NAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGS--IAGYFSED 128 (478)
T ss_dssp GCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEE--EEEEEEEE
T ss_pred CCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCC--eEEEEEEE
Confidence 34678999999 799999999999988774 4442 23432111111 01123445454 67999899
Q ss_pred eEEEcCEEEE-EEEEEecC--------CCCceeeechh
Q 015264 259 PIKIGNVFYP-CSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 259 ~l~ig~~~~~-~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
.|.||+..++ ..|-+... ...|+||||-+
T Consensus 129 tv~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~ 166 (478)
T 1qdm_A 129 SVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGF 166 (478)
T ss_dssp EEEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSC
T ss_pred EEEECCeEECCEEEEEEEecCCcccccccccceecccc
Confidence 9999996654 45544431 24699999865
No 232
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=87.67 E-value=3.1 Score=34.33 Aligned_cols=64 Identities=14% Similarity=0.171 Sum_probs=47.3
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHh--CCC------cCCeEEEe-C---Ce-ecCC---------C----CcccccCCCC
Q 015264 10 EQIISLDVDPHETVENVKALLEVET--QVP------LQQQQLLY-N---GR-EMNN---------A----EKLSALGVKD 63 (410)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~--gip------~~~q~Li~-~---Gk-~L~d---------~----~tL~~~gI~~ 63 (410)
+..+.+.|-..+||.++|++|-... +.| ++++.|-+ . |+ +|.| . .||..|+|.+
T Consensus 16 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~d 95 (127)
T 3h6n_A 16 MDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPE 95 (127)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCT
T ss_pred CCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCC
Confidence 4557788889999999999998764 344 35667765 3 33 3664 1 3799999999
Q ss_pred CCeEEEEecC
Q 015264 64 EDLVMMVSNA 73 (410)
Q Consensus 64 g~~i~l~~~~ 73 (410)
|.+|-++...
T Consensus 96 gatv~l~~~~ 105 (127)
T 3h6n_A 96 GASLAMSLID 105 (127)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEEcc
Confidence 9999998653
No 233
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=87.61 E-value=0.84 Score=43.73 Aligned_cols=102 Identities=10% Similarity=0.133 Sum_probs=60.9
Q ss_pred eEecCEe-----EEEeecCCCcccccCHHHHHHc----CCccccccceeeE-eeCCCcceeeeEEEEEeEEEcCEEEE--
Q 015264 201 MEVNGIP-----LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGV-AHGVGQSEILGRIHVAPIKIGNVFYP-- 268 (410)
Q Consensus 201 v~Ing~~-----v~alVDTGA~~s~is~~~a~~l----gl~~~~~~~~~~~-~~g~g~~~~~g~i~~~~l~ig~~~~~-- 268 (410)
+.|||.. ..++||||.+.+.+..+.++.+ |........ ... ...+... .....+.+.+|+..+.
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~g~-~~~~~~~C~~~---~~~p~i~f~fgg~~~~l~ 277 (330)
T 1yg9_A 202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVEKTTT-RRICKLDCSKI---PSLPDVTFVINGRNFNIS 277 (330)
T ss_dssp EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEEECSS-CEEEEECGGGG---GGSCCEEEEETTEEEEEC
T ss_pred EEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHHhCCcccCCCc-eEEEEEECCCc---cccCcEEEEECCEEEEEC
Confidence 5677765 5799999999999999888765 321100000 000 0011100 0122344566664443
Q ss_pred -----------EEEEEec-CCCCceeeechhhhhcceEEEccCCEEEECC
Q 015264 269 -----------CSFVVLD-SPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 269 -----------~~~~Vl~-~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
|-+.+.. ..+...|||-.||+.+-.++|+.+++|-|..
T Consensus 278 ~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~ 327 (330)
T 1yg9_A 278 SQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGR 327 (330)
T ss_dssp HHHHEEEETTEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHHhcccCCCcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEE
Confidence 3322332 2234689999999999999999999998853
No 234
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=87.55 E-value=1.7 Score=41.51 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=59.2
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccCHH---HHH--------HcCCcccccc----ce------eeEeeCCCccee
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKS---CAE--------RCGLLRLLDD----RY------RGVAHGVGQSEI 251 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is~~---~a~--------~lgl~~~~~~----~~------~~~~~g~g~~~~ 251 (410)
...|+++.|+ ++++++++|||+..+-+... |.. .|......+. .+ ..+..|-| ...
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G-s~~ 90 (334)
T 1j71_A 12 PSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDL-TSS 90 (334)
T ss_dssp SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTS-CEE
T ss_pred cEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceEEEECCC-CEE
Confidence 3578899999 89999999999999988533 321 2332111221 11 11223333 235
Q ss_pred eeEEEEEeEEEcCEEEE-EEEEEec-CCCCceeeechh
Q 015264 252 LGRIHVAPIKIGNVFYP-CSFVVLD-SPNMEFLFGLDM 287 (410)
Q Consensus 252 ~g~i~~~~l~ig~~~~~-~~~~Vl~-~~~~d~iLG~D~ 287 (410)
.|.+....|.+|+..++ ..|-+.. ....|+||||-+
T Consensus 91 ~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~GilGLg~ 128 (334)
T 1j71_A 91 QGSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGIGF 128 (334)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred EEEEEEEEEEECCEEEccEEEEEEEecCCCccEEEEcC
Confidence 78888889999996653 5565554 347899999875
No 235
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=87.51 E-value=3.8 Score=38.88 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=58.0
Q ss_pred EeEecCEe-----EEEeecCCCcccccCHHHHHHc----CCccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEEE--
Q 015264 200 DMEVNGIP-----LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP-- 268 (410)
Q Consensus 200 ~v~Ing~~-----v~alVDTGA~~s~is~~~a~~l----gl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~-- 268 (410)
.+.|+|.. ..++||||.+.+.+..+.++.+ +.....+..+. ..+... .....+.+.+++..+.
T Consensus 200 ~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~---~~C~~~---~~~P~i~f~f~g~~~~i~ 273 (329)
T 1dpj_A 200 GIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYT---LDCNTR---DNLPDLIFNFNGYNFTIG 273 (329)
T ss_dssp EEEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCEECTTSSEE---ECGGGG---GGCCCEEEEETTEEEEEC
T ss_pred eEEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCccCCCCeEE---EECCCC---CcCCcEEEEECCEEEEEC
Confidence 35677764 4699999999999999988765 22100000010 000000 0111223344442221
Q ss_pred -----------EEEEEec-----CCCCceeeechhhhhcceEEEccCCEEEEC
Q 015264 269 -----------CSFVVLD-----SPNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 269 -----------~~~~Vl~-----~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
|-+.+.. ..+...|||-.||+.+-.++|+.+++|-|.
T Consensus 274 ~~~y~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA 326 (329)
T 1dpj_A 274 PYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLA 326 (329)
T ss_dssp TTTSEEEETTEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred HHHhEecCCCEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEE
Confidence 3322222 123568999999999999999999999885
No 236
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=87.45 E-value=1.3 Score=29.98 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=35.0
Q ss_pred CChHHHHHHHHh--cCCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 370 ADFEAKVAKLVE--LGFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 370 ~~~e~~i~~l~~--mGf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
..+|+-|.+.-. -|-+|+-.++.|+.++=|++.|++-|++
T Consensus 7 ~vPe~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLs 48 (53)
T 2qho_B 7 VIPEELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLS 48 (53)
T ss_dssp GSCHHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhc
Confidence 456888888744 4999999999999999999999999986
No 237
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=87.21 E-value=1.9 Score=41.24 Aligned_cols=92 Identities=21% Similarity=0.299 Sum_probs=59.1
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccCHH---HH--------HHcCCcccccc----ce------eeEeeCCCccee
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIISKS---CA--------ERCGLLRLLDD----RY------RGVAHGVGQSEI 251 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is~~---~a--------~~lgl~~~~~~----~~------~~~~~g~g~~~~ 251 (410)
...|+++.|+ ++++++++|||+..+-+... |. ..|.-....+. .+ ..+..|-| ...
T Consensus 12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G-s~~ 90 (342)
T 2qzx_A 12 ITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDG-SYA 90 (342)
T ss_dssp SCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTS-CEE
T ss_pred eEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEEEEeCCC-CeE
Confidence 3578899998 89999999999999988533 32 12322111221 11 11223333 235
Q ss_pred eeEEEEEeEEEcCEEEE-EEEEEec-CCCCceeeechh
Q 015264 252 LGRIHVAPIKIGNVFYP-CSFVVLD-SPNMEFLFGLDM 287 (410)
Q Consensus 252 ~g~i~~~~l~ig~~~~~-~~~~Vl~-~~~~d~iLG~D~ 287 (410)
.|.+....|.+|+..++ ..|-+.. ....|+||||-+
T Consensus 91 ~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~ 128 (342)
T 2qzx_A 91 KGKLYKDTVGIGGVSVRDQLFANVWSTSARKGILGIGF 128 (342)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEECSC
T ss_pred EEEEEEEEEEECCEEecceEEEEEEecCCCcCEEEEcc
Confidence 68888889999996653 5665554 347899999876
No 238
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=87.07 E-value=1.4 Score=33.55 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=50.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEE
Q 015264 13 ISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~ 70 (410)
+...++-..++..||.+++.+.|++-+...+...+..|+++++|-+-+|+-...|.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 3445666778999999999999999999999999988999999999999988888775
No 239
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=86.98 E-value=1.8 Score=42.23 Aligned_cols=99 Identities=15% Similarity=0.226 Sum_probs=58.2
Q ss_pred eEecCE---eEEEeecCCCcccccCHHHHHHc----CCc-cccccceeeEeeCCCcceeeeEEEEEeEEEcCEEE-----
Q 015264 201 MEVNGI---PLKAFVDSGAQSTIISKSCAERC----GLL-RLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFY----- 267 (410)
Q Consensus 201 v~Ing~---~v~alVDTGA~~s~is~~~a~~l----gl~-~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~----- 267 (410)
+.|||. ...++||||.+.+.+..+.++.+ +.. ......+...+.. .....+.+.+|+..+
T Consensus 247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~~~g~~~~~C~~-------~~~P~i~f~f~g~~~~l~~~ 319 (375)
T 1miq_A 247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDN-------KEMPTLEFKSANNTYTLEPE 319 (375)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCEEEETTC-------TTCCCEEEECSSCEEEECGG
T ss_pred EEECCEEcccceEEecCCCccEEcCHHHHHHHHHHhCCcccCCCCeEEEECCC-------CCCCcEEEEECCEEEEECHH
Confidence 677885 56899999999999999888765 221 0000000000100 001112233333221
Q ss_pred ------------EEEEEEecCC--CCceeeechhhhhcceEEEccCCEEEECC
Q 015264 268 ------------PCSFVVLDSP--NMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 268 ------------~~~~~Vl~~~--~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
.|-+.+.... ....|||-.||+.+-.++|+.+++|-|..
T Consensus 320 ~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~ 372 (375)
T 1miq_A 320 YYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAI 372 (375)
T ss_dssp GSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred HhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEE
Confidence 2333333322 25689999999999999999999998853
No 240
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=86.96 E-value=1.1 Score=42.70 Aligned_cols=93 Identities=12% Similarity=0.145 Sum_probs=53.9
Q ss_pred eEEEeecCCCcccccCHH----HHHHcCCccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEE--------------E
Q 015264 207 PLKAFVDSGAQSTIISKS----CAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFY--------------P 268 (410)
Q Consensus 207 ~v~alVDTGA~~s~is~~----~a~~lgl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~--------------~ 268 (410)
...++||||.+.+.+..+ +++.++-.-.....+. .-+.. . ....+.+.+++..+ .
T Consensus 212 ~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~g~~~---~~C~~-~---~~p~i~f~f~g~~~~ip~~~~~~~~~~~~ 284 (325)
T 2apr_A 212 SFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYT---ISCDT-S---AFKPLVFSINGASFQVSPDSLVFEEFQGQ 284 (325)
T ss_dssp CEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSSCEE---ECSCG-G---GCCCEEEEETTEEEEECGGGGEEEEETTE
T ss_pred CceEEEecCCccEECCHHHHHHHHHHHhcccCCCCeEE---EECCC-C---CCCcEEEEECCEEEEECHHHEEEcCCCCe
Confidence 468999999999999999 7776654100000000 00000 0 01122333332211 1
Q ss_pred EEEEEecCCCCceeeechhhhhcceEEEccCCEEEECC
Q 015264 269 CSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 269 ~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
|-+.+........|||-.||+.+-.++|+.+++|-|..
T Consensus 285 C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 322 (325)
T 2apr_A 285 CIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAP 322 (325)
T ss_dssp EEESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCCCEEECHHHhcceEEEEECCCCEEEEEe
Confidence 32222222234589999999999999999999998854
No 241
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=86.86 E-value=2.4 Score=34.50 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=45.9
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHh--CCCc------CCeEEEe-CC---e-ecCC---------C----CcccccCCCCC
Q 015264 11 QIISLDVDPHETVENVKALLEVET--QVPL------QQQQLLY-NG---R-EMNN---------A----EKLSALGVKDE 64 (410)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~--gip~------~~q~Li~-~G---k-~L~d---------~----~tL~~~gI~~g 64 (410)
..+.+.|-..+||.++|++|-... |.|. +++.|-+ .| + +|.| . .||+.|+|.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 347778888999999999997764 4443 4566654 33 3 3554 1 37999999999
Q ss_pred CeEEEEecC
Q 015264 65 DLVMMVSNA 73 (410)
Q Consensus 65 ~~i~l~~~~ 73 (410)
++|-++++.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999998765
No 242
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=86.76 E-value=1.4 Score=34.55 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=25.6
Q ss_pred eEEEEEeEec--CEeEEEeecCCCccccc-CHHH
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTII-SKSC 225 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~i-s~~~ 225 (410)
...|+++.|+ .+++.+++|||+...-+ +..|
T Consensus 13 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C 46 (97)
T 1lya_A 13 AQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHC 46 (97)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTC
T ss_pred CeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCc
Confidence 4678999998 89999999999998866 4444
No 243
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=86.74 E-value=1.6 Score=43.75 Aligned_cols=87 Identities=23% Similarity=0.292 Sum_probs=55.1
Q ss_pred EEEEEeEec--CEeEEEeecCCCcccccCH-HHHHHcCCcccccc----ce------eeEeeCCCcceeeeEEEEEeEEE
Q 015264 196 MLYVDMEVN--GIPLKAFVDSGAQSTIISK-SCAERCGLLRLLDD----RY------RGVAHGVGQSEILGRIHVAPIKI 262 (410)
Q Consensus 196 ~ly~~v~In--g~~v~alVDTGA~~s~is~-~~a~~lgl~~~~~~----~~------~~~~~g~g~~~~~g~i~~~~l~i 262 (410)
..|+++.|+ ++++++++|||+...-+.. .| |......+. .+ ..+..|-|. ..|.+....|.|
T Consensus 75 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c---c~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~i 149 (455)
T 3lpj_A 75 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVSI 149 (455)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEEC
T ss_pred EEEEEEEECCCCeEEEEEEcCCCcceEEecccc---cccCCcccCCCCCCcccCCccEEEEeCCeE--EEEEEEEEEEEE
Confidence 588999999 7999999999999887743 33 332222211 11 123344444 489998999999
Q ss_pred cC---EEEEEEEEEec--------CCCCceeeechh
Q 015264 263 GN---VFYPCSFVVLD--------SPNMEFLFGLDM 287 (410)
Q Consensus 263 g~---~~~~~~~~Vl~--------~~~~d~iLG~D~ 287 (410)
|+ ..+...|.+.. ....|+||||-+
T Consensus 150 g~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~ 185 (455)
T 3lpj_A 150 PHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 185 (455)
T ss_dssp TTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CCCcceeeEEEEEEEEccCcccccCCCcceEEEeCc
Confidence 84 23332333221 245799999985
No 244
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=86.66 E-value=3.1 Score=41.79 Aligned_cols=103 Identities=9% Similarity=0.064 Sum_probs=61.7
Q ss_pred eEecCE---eEEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCCccee-eeEEEEEeEEEcCEEEEE-------
Q 015264 201 MEVNGI---PLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEI-LGRIHVAPIKIGNVFYPC------- 269 (410)
Q Consensus 201 v~Ing~---~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~-~g~i~~~~l~ig~~~~~~------- 269 (410)
+.|+|. ...++||||.+.+.++.+.++.+--. +...... ..|.-...+ ........+.+|+..+.+
T Consensus 322 I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~--i~a~~~~-~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~yi~ 398 (451)
T 3qvc_A 322 VHFGNVSSKKANVILDSATSVITVPTEFFNQFVES--ASVFKVP-FLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQYLE 398 (451)
T ss_dssp EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTT--TTCEECT-TSSCEEEETTCTTCCCEEEEETTEEEEECHHHHEE
T ss_pred EEECCccCCCceEEEeCCCccccCCHHHHHHHHHH--cCCeecC-CCCeEEeeCCcCcCCcEEEEECCEEEEEcHHHhee
Confidence 567774 57899999999999999998876320 1100000 001000000 011233445556544432
Q ss_pred ----------EEEEecCC--CCceeeechhhhhcceEEEccCCEEEECC
Q 015264 270 ----------SFVVLDSP--NMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 270 ----------~~~Vl~~~--~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
-+.+.... ....|||..||+.+-.+.|+.+++|-|..
T Consensus 399 ~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ 447 (451)
T 3qvc_A 399 PLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFAL 447 (451)
T ss_dssp ECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred ecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEE
Confidence 22222222 35689999999999999999999998854
No 245
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=86.18 E-value=1.5 Score=41.72 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=56.4
Q ss_pred EeEEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCC--cceeeeEEEEEeEEEcCEEEE---------------
Q 015264 206 IPLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVG--QSEILGRIHVAPIKIGNVFYP--------------- 268 (410)
Q Consensus 206 ~~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g--~~~~~g~i~~~~l~ig~~~~~--------------- 268 (410)
....++||||.+.+.+..+.++.+--. +..... ....| ...+.-....+.+.+|+..+.
T Consensus 207 ~~~~aiiDSGTs~~~lp~~~~~~i~~~-i~ga~~---~~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~ 282 (323)
T 1izd_A 207 DSITGIADTGTTLLLLDDSIVDAYYEQ-VNGASY---DSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQ 282 (323)
T ss_dssp CCEEEEECTTCCSEEECHHHHHHHHTT-STTCEE---ETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTE
T ss_pred CCceEEEeCCCcceeCCHHHHHHHHHh-CCCcEE---cCcCCEEEEECCCCCceEEEEECCEEEecCHHHeEEecCCCCe
Confidence 456899999999999999998876321 000000 00001 001111122334555554432
Q ss_pred EEEEEecC-CCCceeeechhhhhcceEEEccCCEEEEC
Q 015264 269 CSFVVLDS-PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 269 ~~~~Vl~~-~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
|-+.+... .....|||-.||+.+-.++|+.+++|-|.
T Consensus 283 C~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA 320 (323)
T 1izd_A 283 TFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFA 320 (323)
T ss_dssp EEESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred EEEEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEe
Confidence 22212222 23468999999999999999999999884
No 246
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=86.17 E-value=1.9 Score=40.98 Aligned_cols=103 Identities=10% Similarity=0.015 Sum_probs=58.0
Q ss_pred eEecCE-----eEEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEEE-------
Q 015264 201 MEVNGI-----PLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP------- 268 (410)
Q Consensus 201 v~Ing~-----~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~------- 268 (410)
+.|||. ...++||||.+.+.+..+.++.+--.- ...... ...|.-...+......+.+.+|+..+.
T Consensus 197 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i-~~a~~~-~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~ 274 (325)
T 1ibq_A 197 YSIGDGSSSSSGFSAIADTGTTLILLDDEIVSAYYEQV-SGAQES-YEAGGYVFSCSTDLPDFTVVIGDYKAVVPGKYIN 274 (325)
T ss_dssp EEETTSCCBSCCEEEEECTTCCSEEECHHHHHHHHTTS-TTCBCC-SSSSSCEEETTCCCCCEEEEETTEEEEECHHHHE
T ss_pred EEECCeeccCCCceEEEeCCCCcEeCCHHHHHHHHHhC-CCceEc-CcCCeEEEEcCCCCCcEEEEECCEEEEECHHHhc
Confidence 455663 468999999999999999988763210 000000 000100000101112234444543332
Q ss_pred ----------EEEEEecC-CCCceeeechhhhhcceEEEccCCEEEEC
Q 015264 269 ----------CSFVVLDS-PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 269 ----------~~~~Vl~~-~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
|-+.+... .....|||-.||+.+-.++|+.+++|-|.
T Consensus 275 ~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA 322 (325)
T 1ibq_A 275 YAPVSTGSSTCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFA 322 (325)
T ss_dssp EEESSTTCSEEEESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred ccccCCCCCeEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEee
Confidence 22222222 12457999999999999999999999885
No 247
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=85.89 E-value=1.5 Score=31.54 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=23.4
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHh
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLF 396 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~ 396 (410)
..++.+.-|+++||++.+|.+|++..
T Consensus 16 ~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 16 AAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 45789999999999999999999876
No 248
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=85.75 E-value=1.4 Score=42.19 Aligned_cols=105 Identities=16% Similarity=0.279 Sum_probs=60.6
Q ss_pred EEeEecC-EeE----EEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCCcceee--eEEEEEeEEEcCEEEE---
Q 015264 199 VDMEVNG-IPL----KAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQSEIL--GRIHVAPIKIGNVFYP--- 268 (410)
Q Consensus 199 ~~v~Ing-~~v----~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~--g~i~~~~l~ig~~~~~--- 268 (410)
..+.|+| +.+ .++||||.+.+.+..+.++.+. ..+...+.. ..|.-...+. .....+.+.+++..+.
T Consensus 193 ~~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l~--~~~~a~~~~-~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~ 269 (340)
T 1wkr_A 193 QSIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKYK--KATGAVADN-NTGLLRLTTAQYANLQSLFFTIGGQTFELTA 269 (340)
T ss_dssp EEEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHHH--HHHTCEECT-TTSSEEECHHHHHTCCCEEEEETTEEEEECT
T ss_pred eeEEECCCeEccCCCeEEEeCCcccccCCHHHHHHHH--HhhCCEEcC-CCCeEEeeccccccCCcEEEEECCEEEEEcH
Confidence 5678888 654 7999999999999999988762 111111100 0000000000 0011223444443332
Q ss_pred -------------------EEEEEec--C---CCCceeeechhhhhcceEEEccCCEEEECC
Q 015264 269 -------------------CSFVVLD--S---PNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 269 -------------------~~~~Vl~--~---~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
|-+.+.. . .+...|||-.||+.+-.++|+.+++|-|..
T Consensus 270 ~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 331 (340)
T 1wkr_A 270 NAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLAT 331 (340)
T ss_dssp GGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEE
T ss_pred HHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEe
Confidence 2222222 1 123579999999999999999999999964
No 249
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=85.24 E-value=2.3 Score=40.48 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=58.6
Q ss_pred eEecCEe-------EEEeecCCCcccccCHHHHHHcC----CccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEEE-
Q 015264 201 MEVNGIP-------LKAFVDSGAQSTIISKSCAERCG----LLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP- 268 (410)
Q Consensus 201 v~Ing~~-------v~alVDTGA~~s~is~~~a~~lg----l~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~- 268 (410)
+.|||.. ..++||||.+.+.+..+.++.+- ........+. .-+... .....+.+.+++..+.
T Consensus 198 i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~~g~~~---~~C~~~---~~~P~i~f~f~g~~~~i 271 (329)
T 1htr_B 198 FLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFL---VNCNSI---QNLPSLTFIINGVEFPL 271 (329)
T ss_dssp EEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEECTTSCEE---ECGGGG---GGSCCEEEEETTEEEEE
T ss_pred EEECCceeeecCCCceEEEecCCccEECCHHHHHHHHHHhCCeecCCCeEE---EeCCCc---ccCCcEEEEECCEEEEE
Confidence 5567754 57999999999999988887652 2110000000 000000 0112234555554432
Q ss_pred ------------EEEEEecC-----CCC-ceeeechhhhhcceEEEccCCEEEEC
Q 015264 269 ------------CSFVVLDS-----PNM-EFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 269 ------------~~~~Vl~~-----~~~-d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
|-+.+... .+. ..|||..||+.+-.++|+.+++|-|.
T Consensus 272 ~~~~y~~~~~g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa 326 (329)
T 1htr_B 272 PPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFA 326 (329)
T ss_dssp CHHHHEEECSSCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred CHHHhcccCCCEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEE
Confidence 33223321 123 68999999999999999999999885
No 250
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=85.22 E-value=0.94 Score=32.70 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=40.6
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 9 DEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 9 ~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
+|+. ++++...||.+|.+.+ ++++....+..||+.+... ...+.-+++||.|.++.
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEE
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEe
Confidence 5654 4667788999998876 5667777788999987632 12234688999998874
No 251
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=84.82 E-value=1.7 Score=41.13 Aligned_cols=99 Identities=15% Similarity=0.235 Sum_probs=58.7
Q ss_pred eEecCEe------EEEeecCCCcccccCHHHHHHcC----CccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEEE--
Q 015264 201 MEVNGIP------LKAFVDSGAQSTIISKSCAERCG----LLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP-- 268 (410)
Q Consensus 201 v~Ing~~------v~alVDTGA~~s~is~~~a~~lg----l~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~-- 268 (410)
+.|||.. ..++||||.+.+.+..+.++++- ........+ ..-+... .......+.+|+..+.
T Consensus 195 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g~~---~~~C~~~---~~~p~i~f~f~g~~~~l~ 268 (320)
T 4aa9_A 195 VTINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEF---DVNCGNL---RSMPTVVFEINGRDYPLS 268 (320)
T ss_dssp EEETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEECTTSCE---EECGGGG---GGCCCEEEEETTEEEEEC
T ss_pred EEECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHHhCCcccCCCcE---EEeCCCC---CcCceEEEEECCEEEEEC
Confidence 5677764 47999999999999988877653 211000000 0001000 0112334455554433
Q ss_pred -----------EEEEEec-CCCCceeeechhhhhcceEEEccCCEEEEC
Q 015264 269 -----------CSFVVLD-SPNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 269 -----------~~~~Vl~-~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
|-+.+.. ..+...|||..||+.+-.++|+.+++|-|.
T Consensus 269 ~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA 317 (320)
T 4aa9_A 269 PSAYTSKDQGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLA 317 (320)
T ss_dssp HHHHEEEETTEEEESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred HHHhccCCCCeEEEEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEE
Confidence 2222322 223458999999999999999999999884
No 252
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=84.74 E-value=4.9 Score=39.34 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=58.5
Q ss_pred eEecCEe------EEEeecCCCcccccCHHHHHHc----CCccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEEE--
Q 015264 201 MEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP-- 268 (410)
Q Consensus 201 v~Ing~~------v~alVDTGA~~s~is~~~a~~l----gl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~-- 268 (410)
+.|||.. ..++||||.+.+.+..+.++.+ |... ....+...+..+. ....+.+.+|+..+.
T Consensus 251 i~v~~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-~~g~~~v~C~~~~------~~P~i~f~~~g~~~~l~ 323 (383)
T 2x0b_A 251 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKK-RLFDYVVKCNEGP------TLPDISFHLGGKEYTLT 323 (383)
T ss_dssp EEESSCCCBSTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-CSSCEEEEGGGTT------TCCCEEEEETTEEEEEC
T ss_pred EEeCCceEEcCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-cCCcEEEeccccc------cCceEEEEECCEEEEEC
Confidence 4567754 6899999999999998887764 3211 1101111111100 112234555554432
Q ss_pred ---------------EEEEEecC-----CCCceeeechhhhhcceEEEccCCEEEEC
Q 015264 269 ---------------CSFVVLDS-----PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 269 ---------------~~~~Vl~~-----~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
|-+.+... .+...|||--||+.+-.++|+.+++|-|.
T Consensus 324 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA 380 (383)
T 2x0b_A 324 SADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFA 380 (383)
T ss_dssp HHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred HHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEE
Confidence 22112211 23468999999999999999999999884
No 253
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=84.63 E-value=1.7 Score=42.66 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=55.1
Q ss_pred eEEEEEeEec--CEeEEEeecCCCcccccC-HHHHHHcCCcccccc----c------eeeEeeCCCcceeeeEEEEEeEE
Q 015264 195 VMLYVDMEVN--GIPLKAFVDSGAQSTIIS-KSCAERCGLLRLLDD----R------YRGVAHGVGQSEILGRIHVAPIK 261 (410)
Q Consensus 195 ~~ly~~v~In--g~~v~alVDTGA~~s~is-~~~a~~lgl~~~~~~----~------~~~~~~g~g~~~~~g~i~~~~l~ 261 (410)
...|+++.|+ ++++++++|||+..+-+. ..| |......+. . ...+..|-|. ..|.+....|.
T Consensus 28 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c---~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v~ 102 (402)
T 3vf3_A 28 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVS 102 (402)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC---CcccCCcCcccCcccccCCCEEEEEECcEE--EEEEEEEEEEE
Confidence 3689999999 899999999999988774 334 222221111 1 1123345444 48989899999
Q ss_pred EcC-E--EEEEEEEEec--------CCCCceeeechh
Q 015264 262 IGN-V--FYPCSFVVLD--------SPNMEFLFGLDM 287 (410)
Q Consensus 262 ig~-~--~~~~~~~Vl~--------~~~~d~iLG~D~ 287 (410)
||+ . .....|.+.. ....|+||||-+
T Consensus 103 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~ 139 (402)
T 3vf3_A 103 IPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY 139 (402)
T ss_dssp CTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred ECCccccceeeeEEEEEccccccccCCCccceEEcCc
Confidence 984 2 2222222221 245799999985
No 254
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=84.56 E-value=2.3 Score=41.84 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=56.4
Q ss_pred EEEEEeEec--CEeEEEeecCCCcccccCHH------------H----HHHcCCc------cc-------cccceeeEee
Q 015264 196 MLYVDMEVN--GIPLKAFVDSGAQSTIISKS------------C----AERCGLL------RL-------LDDRYRGVAH 244 (410)
Q Consensus 196 ~ly~~v~In--g~~v~alVDTGA~~s~is~~------------~----a~~lgl~------~~-------~~~~~~~~~~ 244 (410)
..|+++.|+ .+++.++||||+..+-+... | +...+-- .. ....+ .+..
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~~~Sst~~~~~C~s~~C~~~~~~~c~~c~~~~~s~~~~~~~~~-~~~Y 100 (403)
T 3aup_A 22 LHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGL-MSTN 100 (403)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCSSEEEECSSCCCCSSCBCCCTTBHHHHHTTCCCEEECSSSCBTTBCSSEEEE-EEEE
T ss_pred eEEEEEECCCCCceeEEEEECCCCceeECCCCCCCCCCCCccCCCCccccCccccCccccCCCCCCCCCCCccee-Eeec
Confidence 578899998 88999999999998876422 2 2222110 00 01111 2233
Q ss_pred CCCcceeeeEEEEEeEEEcC-----------EEE-EEEEEEecC--------CCCceeeechh
Q 015264 245 GVGQSEILGRIHVAPIKIGN-----------VFY-PCSFVVLDS--------PNMEFLFGLDM 287 (410)
Q Consensus 245 g~g~~~~~g~i~~~~l~ig~-----------~~~-~~~~~Vl~~--------~~~d~iLG~D~ 287 (410)
|.......|.+-...|.||+ ..+ ...|-+... ...|+||||-+
T Consensus 101 ~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~ 163 (403)
T 3aup_A 101 PITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGH 163 (403)
T ss_dssp TTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSS
T ss_pred CCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCC
Confidence 43345678888888899987 444 245555542 25799999875
No 255
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=84.00 E-value=3 Score=40.94 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=25.3
Q ss_pred CceeeechhhhhcceEEEccCCEEEE-CC
Q 015264 279 MEFLFGLDMLRKHQCIIDLKENVLRV-GG 306 (410)
Q Consensus 279 ~d~iLG~D~L~~~~~~ID~~~~~l~i-~~ 306 (410)
...|||--||+.+-+++|+.+++|-| ..
T Consensus 357 ~~~ILG~~fl~~~yvvfD~~~~rIGf~A~ 385 (403)
T 3aup_A 357 AEITLGARQLEENLVVFDLARSRVGFSTS 385 (403)
T ss_dssp SSEEECHHHHTTSCEEEETTTTEEEEESS
T ss_pred CcEEEChHHhcCeEEEEECCCCEEEEecc
Confidence 35799999999999999999999999 54
No 256
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=83.98 E-value=2.1 Score=40.66 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=58.6
Q ss_pred eEecC---EeEEEeecCCCcccccCHHHHHHcCCc--c-ccccceeeEeeCCCcceeeeEEEEEeEEEcCEEEE------
Q 015264 201 MEVNG---IPLKAFVDSGAQSTIISKSCAERCGLL--R-LLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYP------ 268 (410)
Q Consensus 201 v~Ing---~~v~alVDTGA~~s~is~~~a~~lgl~--~-~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~------ 268 (410)
+.|+| ....++||||.+.+.+..+.++++--. . ..+.........+. .....+.+.+|+..+.
T Consensus 198 i~v~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~~~~~~g~~~~~C~-----~~~P~i~f~fgg~~~~l~~~~~ 272 (323)
T 1bxo_A 198 YTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCS-----TNLPDFSVSISGYTATVPGSLI 272 (323)
T ss_dssp EEETTEEEEEEEEEECTTCSSEEECHHHHHHHHTTSTTCEEETTTTEEEECTT-----CCCCCEEEEETTEEEEECHHHH
T ss_pred EEECCccCCCceEEEeCCCCceeCCHHHHHHHHHhCCCceEcCcCCEEEEECC-----CCCceEEEEECCEEEEECHHHe
Confidence 44555 357899999999999999998876321 0 00100000001111 1122334555554332
Q ss_pred ----------EEEEEecC-CCCceeeechhhhhcceEEEccCCEEEEC
Q 015264 269 ----------CSFVVLDS-PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 269 ----------~~~~Vl~~-~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
|-+.+... .....|||-.||+.+-.++|+.+++|-|.
T Consensus 273 ~~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA 320 (323)
T 1bxo_A 273 NYGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFA 320 (323)
T ss_dssp EEEECSSSSCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred EEeccCCCCeEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEe
Confidence 22212222 23458999999999999999999999885
No 257
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=83.94 E-value=7.1 Score=37.16 Aligned_cols=99 Identities=15% Similarity=0.255 Sum_probs=58.5
Q ss_pred EeEecCEe----EEEeecCCCcccccCHHHHHHc----CCcccccccee-eEeeCCCcceeeeEEEEEeEEE-cCEEEE-
Q 015264 200 DMEVNGIP----LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYR-GVAHGVGQSEILGRIHVAPIKI-GNVFYP- 268 (410)
Q Consensus 200 ~v~Ing~~----v~alVDTGA~~s~is~~~a~~l----gl~~~~~~~~~-~~~~g~g~~~~~g~i~~~~l~i-g~~~~~- 268 (410)
.+.|||.. ..++||||.+.+.+..+.++.+ +.....+.... .....+.. ...+.+.+ |+..+.
T Consensus 201 ~i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~~~C~~------~p~i~f~f~~g~~~~i 274 (342)
T 2qzx_A 201 SVNVRGRNVDANTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDSAGNKVYVADCKT------SGTIDFQFGNNLKISV 274 (342)
T ss_dssp EEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHHHTCEEEECTTSCEEEEECTTC------CCEEEEEETTTEEEEE
T ss_pred EEEECCEecCCCcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeeccCCCcEEEEECCC------CCcEEEEECCCcEEEE
Confidence 35678865 4689999999999999988865 22110010000 00001110 12234444 343332
Q ss_pred -------------------EEEEEecCCCCceeeechhhhhcceEEEccCCEEEECC
Q 015264 269 -------------------CSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 269 -------------------~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
|-+.+... -..|||-.||+.+-..+|+.+++|-|..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~ 329 (342)
T 2qzx_A 275 PVSEFLFQTYYTSGKPFPKCEVRIRES--EDNILGDNFLRSAYVVYNLDDKKISMAP 329 (342)
T ss_dssp EGGGGEECCBCTTSCBCSSEEESEEEC--SSCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred cHHHhcccccccCCCCCCccEEEEecC--CCcEeChHhhhcEEEEEECCCCEEEEEe
Confidence 22222222 2579999999999999999999999964
No 258
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=83.91 E-value=4.2 Score=40.87 Aligned_cols=102 Identities=17% Similarity=0.187 Sum_probs=59.8
Q ss_pred eEecCE---eEEEeecCCCcccccCHHHHHHcCCccccccceeeEeeC-CCcceee-eEEEEEeEEEcCEEEE-------
Q 015264 201 MEVNGI---PLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHG-VGQSEIL-GRIHVAPIKIGNVFYP------- 268 (410)
Q Consensus 201 v~Ing~---~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g-~g~~~~~-g~i~~~~l~ig~~~~~------- 268 (410)
+.|||. ...++||||.+.+.+..+.++.+--. +.... ...| .-...+. .....+.+.+|+..+.
T Consensus 323 I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l~~~--i~~~~--~~~g~~~~v~C~~~~~P~itf~fgg~~~~l~~~~yi 398 (453)
T 2bju_A 323 AHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQN--LDVIK--VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYL 398 (453)
T ss_dssp EEETTEEEEEEEEEECTTCCSEEECHHHHHHHTTT--SSCEE--CTTSSCEEEETTCTTCCCEEEECSSCEEEECHHHHE
T ss_pred EEECcEEeccccEEEcCCCCeEecCHHHHHHHHHH--hCCcc--cCCCceEEEecCCCCCCcEEEEECCEEEEECHHHhE
Confidence 567773 36799999999999999999887431 11000 0011 0000000 0112233444443322
Q ss_pred ----------EEEEEecCC--CCceeeechhhhhcceEEEccCCEEEECC
Q 015264 269 ----------CSFVVLDSP--NMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 269 ----------~~~~Vl~~~--~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
|-+.+.... ....|||-.||+.+-.+.|+.+++|-|..
T Consensus 399 ~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~ 448 (453)
T 2bju_A 399 QHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIAL 448 (453)
T ss_dssp EECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred eecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEE
Confidence 322233322 23689999999999999999999999854
No 259
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=83.83 E-value=3.2 Score=39.54 Aligned_cols=101 Identities=12% Similarity=0.087 Sum_probs=58.2
Q ss_pred eEecCE-----eEEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCCc--ceeeeEEEEEeEEEcCEEEE-----
Q 015264 201 MEVNGI-----PLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQ--SEILGRIHVAPIKIGNVFYP----- 268 (410)
Q Consensus 201 v~Ing~-----~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g~--~~~~g~i~~~~l~ig~~~~~----- 268 (410)
+.|||. ...++||||.+.+.+..+.++.+--. +..... ....|. ..+.-....+.+.+|+..+.
T Consensus 201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~-i~~a~~---~~~~g~~~~~C~~~~P~i~f~fgg~~~~ip~~~ 276 (329)
T 1oew_A 201 YAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQ-VSGAKS---SSSVGGYVFPCSATLPSFTFGVGSARIVIPGDY 276 (329)
T ss_dssp EEETTSCCEEEEEEEEECTTCCSEEECHHHHHHHHTT-STTCEE---ETTTTEEEEETTCCCCCEEEEETTEEEEECHHH
T ss_pred EEECCeeccCCCceEEEeCCCCCEECCHHHHHHHHHh-CCCcEE---cCCCCEEEEECCCCCCcEEEEECCEEEEECHHH
Confidence 456664 46799999999999999998876321 000000 000010 00001112234444543332
Q ss_pred ------------EEEEEecC-CCCceeeechhhhhcceEEEc-cCCEEEEC
Q 015264 269 ------------CSFVVLDS-PNMEFLFGLDMLRKHQCIIDL-KENVLRVG 305 (410)
Q Consensus 269 ------------~~~~Vl~~-~~~d~iLG~D~L~~~~~~ID~-~~~~l~i~ 305 (410)
|-+.+... .....|||-.||+.+-.++|+ .+++|-|.
T Consensus 277 ~~~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA 327 (329)
T 1oew_A 277 IDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFA 327 (329)
T ss_dssp HEEEESSTTCSEEEESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEE
T ss_pred eeeeecCCCCCeEEEEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEe
Confidence 22222222 234689999999999999999 99998874
No 260
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=83.48 E-value=3.4 Score=31.99 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=36.4
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCC-eEEEeCC
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQ-QQLLYNG 47 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~-q~Li~~G 47 (410)
+|++.. +|..+.+.++++.+..+|.+++...++++..+ ..|.|..
T Consensus 8 kvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 8 RVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 344444 58899999999999999999999999987655 7777764
No 261
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=83.47 E-value=7.4 Score=29.39 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=41.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHhC-CC-----c-----CCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 11 QIISLDVDPHETVENVKALLEVETQ-VP-----L-----QQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~g-ip-----~-----~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
....++++...||.+|.+.+..... +. . ....+.-||+.... +.-+++||.|.+..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEEC
Confidence 5677888888999999999987752 10 0 12566789988764 34588999999874
No 262
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=83.32 E-value=1.2 Score=31.93 Aligned_cols=53 Identities=23% Similarity=0.436 Sum_probs=31.1
Q ss_pred HHHhcCHHH--HHHHhhcCHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCC
Q 015264 98 QHIRNDANL--MTQLFQSDPELAQVLLGNDLNKLQDLLRERSRQRSELRRRQEEEMALLYADP 158 (410)
Q Consensus 98 ~~~~~nP~~--l~~l~~~nP~L~~ai~~~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~dP 158 (410)
+.++++|.+ ++++.++||++-..+. +-+....++..+...+..+++-.+++.|
T Consensus 5 ~~Lr~~Pqf~~lR~~vq~NP~~L~~lL--------qql~~~nP~l~~~I~~n~e~Fl~ll~e~ 59 (61)
T 2f4m_B 5 EFLRNQPQFQQMRQIIQQNPSLLPALL--------QQIGRENPQLLQQISQHQEHFIQMLNEP 59 (61)
T ss_dssp GGGTTCHHHHHHHHHHHHCGGGHHHHH--------HHHHHHCHHHHHHHHHSHHHHHHHHTSC
T ss_pred HHHHcChHHHHHHHHHHHCHHHHHHHH--------HHHHhHCHHHHHHHHHCHHHHHHHHccc
Confidence 456677875 6677778888776552 2223333444455555566666666555
No 263
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=83.22 E-value=1.3 Score=36.78 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=30.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEe
Q 015264 13 ISLDVDPHETVENVKALLEVETQVPLQQQQLLY 45 (410)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~ 45 (410)
..+.|..++|+.+||..|+..+|+|+++|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 457788899999999999999999999999975
No 264
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=83.06 E-value=2.3 Score=40.54 Aligned_cols=101 Identities=14% Similarity=0.141 Sum_probs=57.0
Q ss_pred eEecCE-----eEEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCCc--ceeeeEEEEEeEEEcCEEEE-----
Q 015264 201 MEVNGI-----PLKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVGQ--SEILGRIHVAPIKIGNVFYP----- 268 (410)
Q Consensus 201 v~Ing~-----~v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g~--~~~~g~i~~~~l~ig~~~~~----- 268 (410)
+.|+|. ...++||||.+.+.+..+.++.+--. +..... ....|. ..+.-....+.+.+++..+.
T Consensus 202 i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~i~~~-i~~a~~---~~~~~~~~~~C~~~~P~i~f~f~g~~~~ip~~~ 277 (329)
T 3c9x_A 202 YSVGGGKLNRNSIDGIADTGTTLLLLDDNVVDAYYAN-VQSAQY---DNQQEGVVFDCDEDLPSFSFGVGSSTITIPGDL 277 (329)
T ss_dssp EEETTCCCCSCCEEEEECTTCCSEEECHHHHHHHHTT-CTTCEE---ETTTTEEEEETTCCCCCEEEEETTEEEEECGGG
T ss_pred EEECCEeccCCCceEEEECCCCcEeCCHHHHHHHHHh-CCCcEE---cCCCCEEEEECCCCCCcEEEEECCEEEEECHHH
Confidence 456664 46899999999999999998875321 000000 000010 00000112223344432221
Q ss_pred ------------EEEEEecC-CCCceeeechhhhhcceEEEccCCEEEEC
Q 015264 269 ------------CSFVVLDS-PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 269 ------------~~~~Vl~~-~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
|-+.+... .....|||-.||+.+-.++|+.+++|-|.
T Consensus 278 ~~~~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA 327 (329)
T 3c9x_A 278 LNLTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWA 327 (329)
T ss_dssp GEEEESSTTCSEEEESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred eeeeccCCCCCeEEEEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEe
Confidence 22222222 23458999999999999999999998874
No 265
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=83.00 E-value=3.7 Score=39.08 Aligned_cols=100 Identities=17% Similarity=0.286 Sum_probs=57.9
Q ss_pred EeEecCEe----EEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCC-c-ceeeeEEEEEeEEE-cCEEEE----
Q 015264 200 DMEVNGIP----LKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVG-Q-SEILGRIHVAPIKI-GNVFYP---- 268 (410)
Q Consensus 200 ~v~Ing~~----v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g-~-~~~~g~i~~~~l~i-g~~~~~---- 268 (410)
.+.|||.. ..++||||.+.+.+..+.++.+-- .+..... ..+.. . ..+ .....+.+.+ |+..+.
T Consensus 201 ~i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~--~~~~~~~--~~~~~~~~~~C-~~~p~i~f~f~~g~~~~i~~~ 275 (334)
T 1j71_A 201 SINFDGTSVSTNADVVLDSGTTITYFSQSTADKFAR--IVGATWD--SRNEIYRLPSC-DLSGDAVFNFDQGVKITVPLS 275 (334)
T ss_dssp EEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHH--HHTCEEE--TTTTEEECSSS-CCCSEEEEEESTTCEEEEEGG
T ss_pred EEEECCEeccCCccEEEeCCCCcEecCHHHHHHHHH--HcCCccc--CCCceEEEEcC-CCCCceEEEEcCCcEEEECHH
Confidence 35678865 468999999999999988876521 0110000 00000 0 000 0012223444 332222
Q ss_pred -----------EEEEEecCCCCceeeechhhhhcceEEEccCCEEEECC
Q 015264 269 -----------CSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 269 -----------~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
|-+.+... -..|||-.||+.+-..+|+.+++|-|..
T Consensus 276 ~y~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~ 322 (334)
T 1j71_A 276 ELILKDSDSSICYFGISRN--DANILGDNFLRRAYIVYDLDDKTISLAQ 322 (334)
T ss_dssp GGEEECSSSSCEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HheeecCCCCeeEEEEeEC--CCcEEChHhhccEEEEEECCCCEEEEEe
Confidence 33323222 2589999999999999999999999964
No 266
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=82.85 E-value=10 Score=31.10 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=43.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHH----hCCCc----CCeEEEe-CC---eecCC----------C----CcccccCCCCC
Q 015264 11 QIISLDVDPHETVENVKALLEVE----TQVPL----QQQQLLY-NG---REMNN----------A----EKLSALGVKDE 64 (410)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~----~gip~----~~q~Li~-~G---k~L~d----------~----~tL~~~gI~~g 64 (410)
..+.+.|-..+||.++|++|-.. .|.|. +++.|-| .| .+|.| . .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 45788888999999999988654 36654 3455543 12 23332 1 37889999999
Q ss_pred CeEEEEec
Q 015264 65 DLVMMVSN 72 (410)
Q Consensus 65 ~~i~l~~~ 72 (410)
++|-++++
T Consensus 119 atlal~kk 126 (126)
T 3kuz_A 119 STIKVFKK 126 (126)
T ss_dssp CEEEEEEC
T ss_pred CEEEEeeC
Confidence 99988753
No 267
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=82.83 E-value=1.9 Score=41.61 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=25.8
Q ss_pred CCceeeechhhhhcceEEEccCCEEEECC
Q 015264 278 NMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 278 ~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
+...|||..||+.+-.++|+.+++|-|..
T Consensus 325 ~~~~iLG~~fl~~~yvvfD~~~~~igfa~ 353 (361)
T 1mpp_A 325 GNQFIVGNLFLRFFVNVYDFGKNRIGFAP 353 (361)
T ss_dssp SSCCEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred CCCEEEChHHhccEEEEEECCCCEEEEEE
Confidence 34689999999999999999999999964
No 268
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=82.76 E-value=7 Score=28.79 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=23.1
Q ss_pred CChHHHHHHHhcCHHHHHHHhhcCHHHHHHh
Q 015264 91 VNPAAFQQHIRNDANLMTQLFQSDPELAQVL 121 (410)
Q Consensus 91 ~~p~~~~~~~~~nP~~l~~l~~~nP~L~~ai 121 (410)
.++++.+..+++||+++..| +||+++.++
T Consensus 7 e~~ee~~~~~m~dPEi~~im--~DP~~~~~l 35 (71)
T 2llw_A 7 ETPEETYQRAMKDPEVAAIM--QDPVMQSIL 35 (71)
T ss_dssp SCHHHHHHHHHHSHHHHHHH--TCTHHHHHH
T ss_pred CCcHHHHHHHhcCHHHHHHh--CCHHHHHHH
Confidence 46777788888999987766 588888887
No 269
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=82.41 E-value=3.1 Score=40.01 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=58.3
Q ss_pred EeEecCEe------EEEeecCCCcccccCHHHHHHc----CCccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEE--
Q 015264 200 DMEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFY-- 267 (410)
Q Consensus 200 ~v~Ing~~------v~alVDTGA~~s~is~~~a~~l----gl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~-- 267 (410)
.+.|||.. ..++||||.+.+.+..+.++.+ |..... ..+...+.... ....+.+.+|+..+
T Consensus 209 ~i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~-g~~~~~C~~~~------~~P~i~f~f~g~~~~i 281 (351)
T 1tzs_A 209 NIQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD-GEYAVECANLN------VMPDVTFTINGVPYTL 281 (351)
T ss_dssp EEEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECS-SSEEECGGGGG------GSCCEEEEETTEEEEE
T ss_pred EEEECCceEEcCCCceEEeccCCcceeCCHHHHHHHHHHhCCcccC-CeEEEeCCCCc------cCCcEEEEECCEEEEE
Confidence 35678876 4799999999999999888765 221100 00000000000 01112233333222
Q ss_pred ---------------EEEEEEecC-----CCCceeeechhhhhcceEEEccCCEEEECC
Q 015264 268 ---------------PCSFVVLDS-----PNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 268 ---------------~~~~~Vl~~-----~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
.|-+.+... .....|||..||+.+-.++|+.+++|-|..
T Consensus 282 ~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~rigfA~ 340 (351)
T 1tzs_A 282 SPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAP 340 (351)
T ss_dssp CTTTSEECC-----CCEEESEEECCCCTTTCSCEEECHHHHHHEEEEEETTTTEEEEEE
T ss_pred CHHHhEeeccCCCCCeEEEEEEECCCCCCCCCeEEEChHHhhheEEEEECCCCEEEEEE
Confidence 132223221 234689999999999999999999999964
No 270
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=82.15 E-value=4 Score=31.28 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=44.1
Q ss_pred CEEEEEeC------CCCEEEEEeCCCCCHHHHHHHHHHHhCC------C---c----CCeEEEeCCeecCCCCcccccCC
Q 015264 1 MRITVMTA------DEQIISLDVDPHETVENVKALLEVETQV------P---L----QQQQLLYNGREMNNAEKLSALGV 61 (410)
Q Consensus 1 M~I~vk~~------~g~~~~iev~~~~TV~~LK~~I~~~~gi------p---~----~~q~Li~~Gk~L~d~~tL~~~gI 61 (410)
|+|+|+.. .|....+++ ...||.+|.+.+..+..- . . ....+.-||+...+..-+ +.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCC
Confidence 78888853 143334665 457999999999887520 1 0 135666788876643222 3458
Q ss_pred CCCCeEEEEe
Q 015264 62 KDEDLVMMVS 71 (410)
Q Consensus 62 ~~g~~i~l~~ 71 (410)
++||.|.+..
T Consensus 79 ~~gDeV~i~P 88 (93)
T 3dwg_C 79 ADGDSVTILP 88 (93)
T ss_dssp CTTCEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9999999874
No 271
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=82.11 E-value=1.2 Score=35.11 Aligned_cols=60 Identities=13% Similarity=0.313 Sum_probs=42.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCcC-----------CeEEEeCC-eecCC------CCcccccCCCCCCeEEEEe
Q 015264 12 IISLDVDPHETVENVKALLEVETQVPLQ-----------QQQLLYNG-REMNN------AEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 12 ~~~iev~~~~TV~~LK~~I~~~~gip~~-----------~q~Li~~G-k~L~d------~~tL~~~gI~~g~~i~l~~ 71 (410)
...++++++.|+++|-+.+...-..... .-.|+..+ ..|+. +++|.++|+.+|+.|+|..
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 4568999999999999999985433222 23333333 23332 5789999999999999963
No 272
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=81.97 E-value=4.3 Score=39.38 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=53.7
Q ss_pred EEEEEeEec--CEeEEEeecCCCcccccCH-HHHHHcC-C-ccccccce------eeEeeCCCcceeeeEEEEEeEEEcC
Q 015264 196 MLYVDMEVN--GIPLKAFVDSGAQSTIISK-SCAERCG-L-LRLLDDRY------RGVAHGVGQSEILGRIHVAPIKIGN 264 (410)
Q Consensus 196 ~ly~~v~In--g~~v~alVDTGA~~s~is~-~~a~~lg-l-~~~~~~~~------~~~~~g~g~~~~~g~i~~~~l~ig~ 264 (410)
..|+++.|+ .+++++++|||++.+-+.. .|. .|. . .......+ ..+..|-|. ..|.+-...|.||+
T Consensus 14 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~-~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~i~~ 90 (383)
T 2ewy_A 14 GYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHS-YIDTYFDTERSSTYRSKGFDVTVKYTQGS--WTGFVGEDLVTIPK 90 (383)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCBT-TBSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEEETT
T ss_pred cEEEEEEecCCCceEEEEEecCCCceEEecCCCC-ccccCcccccCccceeCCceEEEEECCcE--EEEEEEEEEEEECC
Confidence 578999998 8999999999999987743 332 221 1 00000111 123345454 47888888999985
Q ss_pred -EEE--EEEEEEec--------CCCCceeeechh
Q 015264 265 -VFY--PCSFVVLD--------SPNMEFLFGLDM 287 (410)
Q Consensus 265 -~~~--~~~~~Vl~--------~~~~d~iLG~D~ 287 (410)
... ...|.... ....|+||||-+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~ 124 (383)
T 2ewy_A 91 GFNTSFLVNIATIFESENFFLPGIKWNGILGLAY 124 (383)
T ss_dssp TEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CccceeEEEEEEEEeecceeeccCcCceEEecCc
Confidence 222 22232221 135799999976
No 273
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=81.83 E-value=0.55 Score=34.92 Aligned_cols=55 Identities=22% Similarity=0.427 Sum_probs=31.0
Q ss_pred HHHhcCHHH--HHHHhhcCHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhCCCCC
Q 015264 98 QHIRNDANL--MTQLFQSDPELAQVLLGNDLNKLQDLLRERSRQRSELRRRQEEEMALLYADPFD 160 (410)
Q Consensus 98 ~~~~~nP~~--l~~l~~~nP~L~~ai~~~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l~~dP~~ 160 (410)
+.++++|.+ |+++.++||++-..+. +-|....++..+...+.++++-+|++.|.+
T Consensus 7 ~~Lr~~Pqf~qlR~~vqqNP~lL~~lL--------qqL~~~NPqL~q~I~~n~e~Fl~ll~e~~~ 63 (72)
T 1pve_A 7 EFLRNQPQFQQMRQIIQQNPSLLPALL--------QQIGRENPQLLQQISQHQEHFIQMLNEPVQ 63 (72)
T ss_dssp GGGTTCTTTTTHHHHHTTCGGGHHHHH--------HHHHTTCHHHHHHHHTTHHHHHHHHHSCSC
T ss_pred HHHHcChHHHHHHHHHHHCHHHHHHHH--------HHHHhHCHHHHHHHHHCHHHHHHHHcCCcc
Confidence 456677764 6777778888776542 112222244444444555666666666644
No 274
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=81.59 E-value=1.7 Score=32.17 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=43.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+| +|+.+ ++ ...||.+|-+ ..++++...-+..||.++.-+ ...+.-+++||.|-++.-
T Consensus 1 M~I~v---NG~~~--e~-~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 1 MLVTI---NGEQR--EV-QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTP 61 (73)
T ss_dssp CCEEE---TTEEE--CC-CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECC
T ss_pred CEEEE---CCEEE--Ec-CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEcc
Confidence 44544 46644 45 6689998875 457888888888999988632 244557899999999853
No 275
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=81.25 E-value=1.6 Score=32.77 Aligned_cols=61 Identities=25% Similarity=0.288 Sum_probs=44.0
Q ss_pred CEEEEEeCCCCEEEEEeC--CCCCHHHHHHHHHHHhCCC-cCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 1 MRITVMTADEQIISLDVD--PHETVENVKALLEVETQVP-LQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~--~~~TV~~LK~~I~~~~gip-~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
|+|+| +|+. ++++ ...||.+|-+. .+++ +...-+..||.++.-+ ...+.-+++||.|-++.
T Consensus 1 M~I~v---NGe~--~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTV---NGKP--STVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp CEEEE---TTEE--EECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred CEEEE---CCEE--EEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 55554 4664 4556 67899998764 4677 7777888999988643 34556789999999874
No 276
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=81.11 E-value=4.3 Score=29.36 Aligned_cols=63 Identities=16% Similarity=0.094 Sum_probs=43.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|+|+|...+|+. .+++...|+.+|-..+....+ ....-...||+...-+ +-+++|+.|-++..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt~ 63 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLSS 63 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEEC
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEEC
Confidence 889999888886 567788999999887743321 1223334699876654 45667888888753
No 277
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=80.61 E-value=1.8 Score=41.27 Aligned_cols=98 Identities=15% Similarity=0.225 Sum_probs=58.8
Q ss_pred eEecCEeE----EEeecCCCcccccCHHHHHHcCCcccccccee-------eEeeCCCcceeeeEEEEEeEEEc-CEEEE
Q 015264 201 MEVNGIPL----KAFVDSGAQSTIISKSCAERCGLLRLLDDRYR-------GVAHGVGQSEILGRIHVAPIKIG-NVFYP 268 (410)
Q Consensus 201 v~Ing~~v----~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~-------~~~~g~g~~~~~g~i~~~~l~ig-~~~~~ 268 (410)
+.|||..+ .++||||.+.+.+..+.++.+-- .+...+. .....+.. .....+.+.++ +..+.
T Consensus 204 i~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~--~~~~~~~~~~~~~~~~~~~C~~----~~~p~i~f~f~~g~~~~ 277 (339)
T 3fv3_A 204 VNLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLAD--KAGARLVQVARDQYLYFIDCNT----DTSGTTVFNFGNGAKIT 277 (339)
T ss_dssp EEESSCEEEEEEEEEECTTBSSEEECHHHHHHHHH--HHTCEEEEEETTEEEEEECTTC----CCCSEEEEEETTSCEEE
T ss_pred EEECCEeecCCccEEEeCCCCCEecCHHHHHHHHH--HcCCEEccccccCceEEEecCC----CCCCcEEEEECCCCEEE
Confidence 56777754 58999999999999998877532 0111110 00111111 01223345553 33322
Q ss_pred --------------EEEEEecCCCCceeeechhhhhcceEEEccCCEEEECC
Q 015264 269 --------------CSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 269 --------------~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
|-+.+.. .-..|||..||+.+-..+|+.++++-|..
T Consensus 278 v~~~~~~~~~~~~~C~~~i~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~ 327 (339)
T 3fv3_A 278 VPNTEYVYQNGDGTCLWGIQP--SDDTILGDNFLRHAYLLYNLDANTISIAQ 327 (339)
T ss_dssp EEGGGGEEECSSSCEEESEEE--CSSCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred ECHHHheeeCCCCeEEEEEEe--CCcEEeChHHHhCEEEEEECCCCEEEEEe
Confidence 2222222 12479999999999999999999999964
No 278
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=80.50 E-value=3.2 Score=34.17 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHhCCCcCCeEEEe--CCeecC-----C--CCcccccCCCCCCeEEEEe
Q 015264 20 HETVENVKALLEVETQVPLQQQQLLY--NGREMN-----N--AEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 20 ~~TV~~LK~~I~~~~gip~~~q~Li~--~Gk~L~-----d--~~tL~~~gI~~g~~i~l~~ 71 (410)
..|+.+|-..+..++|... +..++- +.+.|- | +++|+++||+.|++|.++-
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~D 78 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSD 78 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEc
Confidence 4799999988988898864 555542 344543 2 4899999999999999983
No 279
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=79.42 E-value=4.5 Score=39.51 Aligned_cols=90 Identities=21% Similarity=0.260 Sum_probs=53.5
Q ss_pred EEEEEeEec--CEeEEEeecCCCcccccCHH-HHHHcCC-ccccccce------eeEeeCCCcceeeeEEEEEeEEEc-C
Q 015264 196 MLYVDMEVN--GIPLKAFVDSGAQSTIISKS-CAERCGL-LRLLDDRY------RGVAHGVGQSEILGRIHVAPIKIG-N 264 (410)
Q Consensus 196 ~ly~~v~In--g~~v~alVDTGA~~s~is~~-~a~~lgl-~~~~~~~~------~~~~~g~g~~~~~g~i~~~~l~ig-~ 264 (410)
..|+++.|+ +++++++||||+...-+... |...-+. .......+ ..+..|-|. ..|.+-...|.|| +
T Consensus 22 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~ig~g 99 (395)
T 2qp8_A 22 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVSIPHG 99 (395)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEECTTS
T ss_pred eEEEEEEecCCCceEEEEEecCCCceEEECCCCccccCCcCcccCCCceeCCceEEEEECCcE--EEEEEEeEEEEECCC
Confidence 478899999 89999999999999887433 3211111 00011111 123344454 3688888899998 4
Q ss_pred E--EEEEEEEEec--------CCCCceeeechh
Q 015264 265 V--FYPCSFVVLD--------SPNMEFLFGLDM 287 (410)
Q Consensus 265 ~--~~~~~~~Vl~--------~~~~d~iLG~D~ 287 (410)
. .+...|.+.. ....|+||||-+
T Consensus 100 ~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~ 132 (395)
T 2qp8_A 100 PNVTVRANIAAITESDKFFINGSNWEGILGLAY 132 (395)
T ss_dssp CSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred CCceEEEEEEEEEccCcccccccCccceEEcCc
Confidence 2 2222332221 235799999976
No 280
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=79.38 E-value=9.3 Score=37.02 Aligned_cols=99 Identities=16% Similarity=0.194 Sum_probs=58.1
Q ss_pred eEecCEe------EEEeecCCCcccccCHHHHHHc----CCccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEEEE-
Q 015264 201 MEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPC- 269 (410)
Q Consensus 201 v~Ing~~------v~alVDTGA~~s~is~~~a~~l----gl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~~- 269 (410)
+.|||.. ..++||||.+.+.+..+.++.+ |........ ....+... .....+.+.+|+..+.+
T Consensus 241 i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~~g~---~~v~C~~~---~~lP~i~f~~~g~~~~l~ 314 (370)
T 3psg_A 241 ITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGE---MVISCSSI---DSLPDIVFTIDGVQYPLS 314 (370)
T ss_dssp EESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECTTCC---EECCGGGG---GGCCCEEEEETTEEEEEC
T ss_pred EEECCEEEecCCCceEEEcCCCCcEECCHHHHHHHHHHhCCcccCCCc---EEEECCCc---ccCCcEEEEECCEEEEEC
Confidence 4567753 5799999999999998887765 321100000 00011100 11223345566644432
Q ss_pred ------------EEEEec--C---CCCceeeechhhhhcceEEEccCCEEEEC
Q 015264 270 ------------SFVVLD--S---PNMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 270 ------------~~~Vl~--~---~~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
-+.+.. . .+.-.|||..||+.+-.++|+.+++|-|.
T Consensus 315 ~~~yi~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA 367 (370)
T 3psg_A 315 PSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLA 367 (370)
T ss_dssp HHHHEEECSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred HHHhcccCCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEE
Confidence 222222 1 12238999999999999999999999884
No 281
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=79.09 E-value=3.1 Score=39.65 Aligned_cols=102 Identities=17% Similarity=0.256 Sum_probs=57.8
Q ss_pred EeEecCEe-----EEEeecCCCcccccCHHHHHHcCCccccccceeeEeeCCC--cceeeeEEEEEeEEEc-CEEE----
Q 015264 200 DMEVNGIP-----LKAFVDSGAQSTIISKSCAERCGLLRLLDDRYRGVAHGVG--QSEILGRIHVAPIKIG-NVFY---- 267 (410)
Q Consensus 200 ~v~Ing~~-----v~alVDTGA~~s~is~~~a~~lgl~~~~~~~~~~~~~g~g--~~~~~g~i~~~~l~ig-~~~~---- 267 (410)
.+.|||.. ..++||||.+.+.+..+.++.+-- .+.........|.+ ...+. ....+.+.++ +..+
T Consensus 200 ~i~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~--~~~~~~~~~~~~~~~~~~~C~-~~p~i~f~f~~g~~~~vp~ 276 (342)
T 3pvk_A 200 SVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIK--AFNGKLTQDSNGNSFYEVDCN-LSGDVVFNFSKNAKISVPA 276 (342)
T ss_dssp EEEETTEEEEEEEEEEEECTTCSSEEECHHHHHHHHH--HTTCEEEECTTSCEEEEECSC-CCSEEEEEESTTCEEEEEG
T ss_pred EEEECCEEecCCCceEEEeCCCCCeecCHHHHHHHHH--HcCCeecccCCCceEEEEecC-CCCceEEEECCCCEEEEcH
Confidence 35677775 578999999999999988876531 01100000000000 00000 0122234443 2222
Q ss_pred ----------------EEEEEEecCCCCceeeechhhhhcceEEEccCCEEEECC
Q 015264 268 ----------------PCSFVVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 268 ----------------~~~~~Vl~~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
.|-+.+... -..|||..||+.+-..+|+.+++|-|..
T Consensus 277 ~~~~~~~~~~~g~~~~~C~~~i~~~--~~~ilG~~fl~~~y~vfD~~~~~igfA~ 329 (342)
T 3pvk_A 277 SEFAASLQGDDGQPYDKCQLLFDVN--DANILGDNFLRSAYIVYDLDDNEISLAQ 329 (342)
T ss_dssp GGGEEC----------CEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHheeeccccCCCcCCeeEEEEeeC--CCeEeCHHHHhcEEEEEECCCCEEEEEe
Confidence 122222222 3469999999999999999999999964
No 282
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=78.66 E-value=4.2 Score=38.71 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=59.3
Q ss_pred eEecCEe------EEEeecCCCcccccCHHHHHHc----CCccccccceeeEeeCCCcceeeeEEEEEeEEEcCEEEEE-
Q 015264 201 MEVNGIP------LKAFVDSGAQSTIISKSCAERC----GLLRLLDDRYRGVAHGVGQSEILGRIHVAPIKIGNVFYPC- 269 (410)
Q Consensus 201 v~Ing~~------v~alVDTGA~~s~is~~~a~~l----gl~~~~~~~~~~~~~g~g~~~~~g~i~~~~l~ig~~~~~~- 269 (410)
+.|||.. ..++||||.+.+.+..+.++++ +...... +....+... .....+.+.+|+..+.+
T Consensus 208 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~----g~~~~C~~~---~~~p~i~f~f~g~~~~l~ 280 (341)
T 3k1w_A 208 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKRLF----DYVVKCNEG---PTLPDISFHLGGKEYTLT 280 (341)
T ss_dssp EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECSS----CEEEEGGGG---GGCCCEEEEETTEEEEEC
T ss_pred EEECCEEeecCCCCEEEEECCCChhcCCHHHHHHHHHHcCCeecCC----CeEEeCCCC---CcCCcEEEEECCEEEEEC
Confidence 4567763 5799999999999999887765 3211000 000001100 01123345555544433
Q ss_pred ----------------EEEEec-----CCCCceeeechhhhhcceEEEccCCEEEECC
Q 015264 270 ----------------SFVVLD-----SPNMEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 270 ----------------~~~Vl~-----~~~~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
-+.+.. ......|||..||+.+-.++|+.+++|-|..
T Consensus 281 ~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~ 338 (341)
T 3k1w_A 281 SADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFAL 338 (341)
T ss_dssp HHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred HHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEE
Confidence 111222 1234689999999999999999999998853
No 283
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=78.50 E-value=3.8 Score=31.29 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=33.6
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEE-EeCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQL-LYNG 47 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~L-i~~G 47 (410)
|||.+-. ++..|.+-|+.+.+..+|+.+|..+..+. ...+ .|++
T Consensus 13 ~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykd 57 (85)
T 1ip9_A 13 TKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLF 57 (85)
T ss_dssp EEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCS
T ss_pred eEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecC
Confidence 3555555 47789999999999999999999999883 4444 3443
No 284
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=77.19 E-value=7.4 Score=40.42 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=45.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHh--CCCc------CCeEEEe----CCe-ecCCC-------------CcccccCCCCC
Q 015264 11 QIISLDVDPHETVENVKALLEVET--QVPL------QQQQLLY----NGR-EMNNA-------------EKLSALGVKDE 64 (410)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~--gip~------~~q~Li~----~Gk-~L~d~-------------~tL~~~gI~~g 64 (410)
..+.+.|-..+||.++|++|-... |+|. +++.|-+ .|+ +|.|. .||+.|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 347788889999999999998653 4443 4556654 233 46652 38999999999
Q ss_pred CeEEEEecC
Q 015264 65 DLVMMVSNA 73 (410)
Q Consensus 65 ~~i~l~~~~ 73 (410)
++|-|+++.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999998654
No 285
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=76.90 E-value=2.1 Score=30.66 Aligned_cols=26 Identities=12% Similarity=0.323 Sum_probs=16.0
Q ss_pred HHHHHHHhcCHHHHHHHhhcCHHHHHHh
Q 015264 94 AAFQQHIRNDANLMTQLFQSDPELAQVL 121 (410)
Q Consensus 94 ~~~~~~~~~nP~~l~~l~~~nP~L~~ai 121 (410)
+++.+.+.+||+++..| ++|++..++
T Consensus 2 ~e~~~kl~~dPe~~~~m--~dP~~~~~l 27 (62)
T 2lnm_A 2 EEVISKIMENPDVAMAF--QNPRVQAAL 27 (62)
T ss_dssp HHHHHHHTTSHHHHHHT--TSHHHHHHH
T ss_pred HHHHHHHHcChHHHHHc--CCHHHHHHH
Confidence 45666666777666544 356666655
No 286
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=76.39 E-value=5.1 Score=38.97 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=24.9
Q ss_pred ceeeechhhhhcceEEEccCCEEEECC
Q 015264 280 EFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 280 d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
-.|||--||+.+-.+.|+.+++|-|..
T Consensus 345 ~~ILGd~fl~~~yvvfD~~~~riGfA~ 371 (381)
T 1t6e_X 345 AVILGGAQMEDFVLDFDMEKKRLGFSR 371 (381)
T ss_dssp SEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred eEEEChHHhCCcEEEEECCCCEEEEec
Confidence 489999999999999999999999964
No 287
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.09 E-value=9.2 Score=27.31 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=36.3
Q ss_pred CCChHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 369 GADFEAKVAKLVEL--GFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 369 ~~~~e~~i~~l~~m--Gf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
.+..+..++++.+| -++++....-|+.+| +++..++-+|.|
T Consensus 10 ~~ql~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeG 52 (61)
T 2ekf_A 10 DVQLATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEG 52 (61)
T ss_dssp CCCHHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 34567889999998 799999999999987 999999999977
No 288
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=74.51 E-value=5 Score=28.47 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=31.7
Q ss_pred ChHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHhh
Q 015264 371 DFEAKVAKLVEL-GFGREAVIQALKLFDGNEEQAAGFL 407 (410)
Q Consensus 371 ~~e~~i~~l~~m-Gf~r~~~~~aL~~~~~n~~~A~~~l 407 (410)
..++.|..|... |-..+=+..+|..++||.++|+.-.
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 43 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 43 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 456778888774 9999999999999999999998754
No 289
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.35 E-value=10 Score=26.80 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=36.2
Q ss_pred CCChHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 369 GADFEAKVAKLVEL--GFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 369 ~~~~e~~i~~l~~m--Gf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
.+..+..++++-+| -+++++...-|+.+| +++..++-++.|
T Consensus 10 ~~q~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeG 52 (58)
T 2ejs_A 10 NSQLNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEG 52 (58)
T ss_dssp CCHHHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhc
Confidence 34567889999998 799999999999998 999999999876
No 290
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=72.20 E-value=17 Score=29.27 Aligned_cols=69 Identities=12% Similarity=0.189 Sum_probs=42.1
Q ss_pred CEEEEEeCC------C--CEEEEEeCC---CCCHHHHHHHHHHHhCCCcCCeEEEe-CCe------ecCCCC---cc--c
Q 015264 1 MRITVMTAD------E--QIISLDVDP---HETVENVKALLEVETQVPLQQQQLLY-NGR------EMNNAE---KL--S 57 (410)
Q Consensus 1 M~I~vk~~~------g--~~~~iev~~---~~TV~~LK~~I~~~~gip~~~q~Li~-~Gk------~L~d~~---tL--~ 57 (410)
|+|+|+... | +.+.++++. ..||.+|...+...+ |....+|+. +|+ +|-|+. .| .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 678888652 3 356788873 369999999998875 222223321 122 222332 22 3
Q ss_pred ccCCCCCCeEEEEe
Q 015264 58 ALGVKDEDLVMMVS 71 (410)
Q Consensus 58 ~~gI~~g~~i~l~~ 71 (410)
++-+++||.|.++.
T Consensus 90 dt~L~dGDeV~iip 103 (114)
T 1wgk_A 90 DYQLQDQDSILFIS 103 (114)
T ss_dssp TCBCCSSEEEEEEE
T ss_pred CcCCCCCCEEEEeC
Confidence 46799999998875
No 291
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=71.71 E-value=8.8 Score=28.28 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=38.5
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHhC-----CCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 11 QIISLDVDPHETVENVKALLEVETQ-----VPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~g-----ip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
....++ ....||.+|.+.+..... ++.....+..||+.... +.-+++||.|.+..
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFP 76 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEEC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeC
Confidence 345566 567899999999875531 22334567789988753 34688999999874
No 292
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=71.71 E-value=4.3 Score=30.05 Aligned_cols=38 Identities=34% Similarity=0.447 Sum_probs=31.4
Q ss_pred hHHHHHHHHhc-CCCHHHHH-HHHHHhCCCHHHHHHhhhC
Q 015264 372 FEAKVAKLVEL-GFGREAVI-QALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 372 ~e~~i~~l~~m-Gf~r~~~~-~aL~~~~~n~~~A~~~l~~ 409 (410)
.+--+++|-+. |..--+.. +||++++||...|+.+|..
T Consensus 24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 45678999895 98766655 5999999999999999964
No 293
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=71.61 E-value=5.9 Score=28.98 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=40.1
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCCCcCCe--EEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 11 QIISLDVDPHETVENVKALLEVETQVPLQQQ--QLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~gip~~~q--~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
+...++++...||.+|.+.+..... ..... .+..||+....+ .-+++||.|.+..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~p 72 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIP 72 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEEC
Confidence 3456777788899999999887642 01233 677899988754 4688999998864
No 294
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=71.34 E-value=23 Score=27.31 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=41.2
Q ss_pred CEEEEEeC------C--CCEEEEEeC--CCCCHHHHHHHHHHHhCCCcCC-------------eEEEeCCeecCCCCcc-
Q 015264 1 MRITVMTA------D--EQIISLDVD--PHETVENVKALLEVETQVPLQQ-------------QQLLYNGREMNNAEKL- 56 (410)
Q Consensus 1 M~I~vk~~------~--g~~~~iev~--~~~TV~~LK~~I~~~~gip~~~-------------q~Li~~Gk~L~d~~tL- 56 (410)
|+|+|+.. - .+...++++ ...||.+|.+.+..+..-.... ..+.-||+-.. .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~---~~~ 78 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE---LEG 78 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG---GGT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc---ccC
Confidence 67888752 1 244667776 6789999999998876311111 11223444211 11
Q ss_pred -cccCCCCCCeEEEEe
Q 015264 57 -SALGVKDEDLVMMVS 71 (410)
Q Consensus 57 -~~~gI~~g~~i~l~~ 71 (410)
.++-+++||.|.+..
T Consensus 79 ~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 79 EKDYILEDGDIISFTS 94 (99)
T ss_dssp GGGCBCCTTCEEEEEE
T ss_pred CCCcCcCCCCEEEEEC
Confidence 245689999998864
No 295
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=71.08 E-value=34 Score=26.78 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=54.4
Q ss_pred EEEEEeCCC---CEEEEEeCCCCCHHHHHHHHHHHhCCCcC--CeEEEeC---CeecCCCCcccccCCCCCCeEEEEec
Q 015264 2 RITVMTADE---QIISLDVDPHETVENVKALLEVETQVPLQ--QQQLLYN---GREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 2 ~I~vk~~~g---~~~~iev~~~~TV~~LK~~I~~~~gip~~--~q~Li~~---Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
+|+|...+. ..+++.|..+.-|+-+.-+|-++.+++.+ +--|-.- -..|+-..||..|||+.+..++..+.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 567777554 44788999999999999888887777653 4555543 24677889999999999999998753
No 296
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=70.92 E-value=16 Score=35.28 Aligned_cols=74 Identities=12% Similarity=0.195 Sum_probs=56.8
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCc-CCeEEEeCC---------eecCCCCcccccCCCCCCeEEEEe
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPL-QQQQLLYNG---------REMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~-~~q~Li~~G---------k~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
.+.|..++|....+.++..+|+.++-..|..+.|+.. +-.-|.+.. .-|+.++++.+.++....++++.+
T Consensus 87 ~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frv 166 (371)
T 3ivf_A 87 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRR 166 (371)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEE
Confidence 4778889999999999999999999999999999865 345666532 235556788887777777888766
Q ss_pred cCCC
Q 015264 72 NAAS 75 (410)
Q Consensus 72 ~~~~ 75 (410)
+-..
T Consensus 167 Kf~~ 170 (371)
T 3ivf_A 167 KFFY 170 (371)
T ss_dssp CCCC
T ss_pred EEec
Confidence 6443
No 297
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=70.14 E-value=18 Score=28.02 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=42.0
Q ss_pred CEEEEEeCC------C-CEEEEEeCCCCCHHHHHHHHHHHhC-CCc---------CCe-------EEEeCCeecCCCCcc
Q 015264 1 MRITVMTAD------E-QIISLDVDPHETVENVKALLEVETQ-VPL---------QQQ-------QLLYNGREMNNAEKL 56 (410)
Q Consensus 1 M~I~vk~~~------g-~~~~iev~~~~TV~~LK~~I~~~~g-ip~---------~~q-------~Li~~Gk~L~d~~tL 56 (410)
|+|+|+... | +.+. ++ ..||.+|.+.+..... +.. ... .+..||+.......
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~--l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~- 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELP--LS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEG- 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEE--EE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTS-
T ss_pred eEEEEEEeHHHHHHhCCCeEE--Ee-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCC-
Confidence 688888642 3 3344 44 6899999999987741 111 012 56678876642211
Q ss_pred cccCCCCCCeEEEEe
Q 015264 57 SALGVKDEDLVMMVS 71 (410)
Q Consensus 57 ~~~gI~~g~~i~l~~ 71 (410)
.+.-+++||.|.+..
T Consensus 80 ~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 80 LETLLKDSDEIGILP 94 (99)
T ss_dssp TTSCCCTTEEEEEEC
T ss_pred CCCCCCCCCEEEEEC
Confidence 233589999998874
No 298
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=69.71 E-value=8.8 Score=27.22 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=39.8
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 9 DEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 9 ~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
+|+.+ ++ ...||.+|.+.+ ++++....+..||+.+..+ .-.+.-+++||.|.++.
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEE
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEe
Confidence 56654 55 678999998876 4667777788999987643 22334689999999875
No 299
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=69.67 E-value=3.7 Score=35.06 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHhhh
Q 015264 384 FGREAVIQALKLFDGNEEQAAGFLF 408 (410)
Q Consensus 384 f~r~~~~~aL~~~~~n~~~A~~~l~ 408 (410)
+++++|.+||+.++||.+.|+....
T Consensus 75 ~s~~EAr~Aw~~~~Gd~~~Av~~ci 99 (162)
T 4dbg_B 75 FSCQEARRAWLDRHGNLDEAVEECV 99 (162)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCChHHHHHHHH
Confidence 7899999999999999999998653
No 300
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=69.26 E-value=1.9 Score=34.74 Aligned_cols=69 Identities=23% Similarity=0.226 Sum_probs=41.5
Q ss_pred CEEEEEeCC------CCEEEEEeCC----CCCHHHHHHHHHHHhCCCcCCeEEE-eCC--e------ecCCCCcc-----
Q 015264 1 MRITVMTAD------EQIISLDVDP----HETVENVKALLEVETQVPLQQQQLL-YNG--R------EMNNAEKL----- 56 (410)
Q Consensus 1 M~I~vk~~~------g~~~~iev~~----~~TV~~LK~~I~~~~gip~~~q~Li-~~G--k------~L~d~~tL----- 56 (410)
|+|+|+... |+...++++. ..||.+|-..+...+ +..+-+|+ -+| . +|-|+.-.
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 677887643 4555677773 359999988888775 22233333 123 1 23344322
Q ss_pred cccCCCCCCeEEEEe
Q 015264 57 SALGVKDEDLVMMVS 71 (410)
Q Consensus 57 ~~~gI~~g~~i~l~~ 71 (410)
.+|-+++||.|.+.+
T Consensus 83 ldt~L~dgD~V~fis 97 (110)
T 2k9x_A 83 MDYVLNDGDTVEFIS 97 (110)
T ss_dssp SCCCCCSSCEEEEEE
T ss_pred cccCCCCcCEEEEeC
Confidence 346799999988864
No 301
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=69.04 E-value=13 Score=36.58 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.6
Q ss_pred ceeeechhhhhcceEEEccCCEEEECC
Q 015264 280 EFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 280 d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
-.|||--||+.+-+++|+.+++|-|..
T Consensus 371 ~~IlGd~fl~~~~vvfD~~~~riGfa~ 397 (413)
T 3vla_A 371 SIVIGGHQLEDNLVQFDLATSRVGFSG 397 (413)
T ss_dssp SEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred ceeEehhhhcCeEEEEECCCCEEEEEE
Confidence 369999999999999999999999964
No 302
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=68.46 E-value=6.5 Score=38.37 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=25.5
Q ss_pred CceeeechhhhhcceEEEccCCEEEECC
Q 015264 279 MEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 279 ~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
...|||..||+.+-.++|+.+++|-|..
T Consensus 345 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~ 372 (402)
T 3vf3_A 345 TGTVMGAVIMEGFYVVFDRARKRIGFAV 372 (402)
T ss_dssp SCEEECHHHHTTEEEEEEGGGTEEEEEE
T ss_pred CcEEEChHHhCCeEEEEECCCCEEEEEe
Confidence 4589999999999999999999999964
No 303
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=68.37 E-value=18 Score=37.54 Aligned_cols=64 Identities=19% Similarity=0.311 Sum_probs=45.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHh--CCC------cCCeEEEe-C---Ce-ecCCC-------------CcccccCCCC
Q 015264 10 EQIISLDVDPHETVENVKALLEVET--QVP------LQQQQLLY-N---GR-EMNNA-------------EKLSALGVKD 63 (410)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~--gip------~~~q~Li~-~---Gk-~L~d~-------------~tL~~~gI~~ 63 (410)
...+.+.|-..+||.++|++|-... |+| +++..|-+ . |+ +|.|. .||+.|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3557788889999999999997763 343 35566654 2 33 45541 3799999999
Q ss_pred CCeEEEEecC
Q 015264 64 EDLVMMVSNA 73 (410)
Q Consensus 64 g~~i~l~~~~ 73 (410)
|++|-++++.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999998654
No 304
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=67.08 E-value=5.5 Score=28.06 Aligned_cols=36 Identities=17% Similarity=-0.101 Sum_probs=30.5
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHhh
Q 015264 372 FEAKVAKLVEL-GFGREAVIQALKLFDGNEEQAAGFL 407 (410)
Q Consensus 372 ~e~~i~~l~~m-Gf~r~~~~~aL~~~~~n~~~A~~~l 407 (410)
.++.|.+|... |-..+=+..+|..++||.++|+.-.
T Consensus 6 q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F 42 (57)
T 2jp7_A 6 QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGF 42 (57)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46678888664 9999999999999999999998653
No 305
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=65.54 E-value=3.3 Score=29.43 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHhh
Q 015264 384 FGREAVIQALKLFDGNEEQAAGFL 407 (410)
Q Consensus 384 f~r~~~~~aL~~~~~n~~~A~~~l 407 (410)
|.++-..+||+.++||...|+..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 567888899999999999999876
No 306
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=65.29 E-value=8.7 Score=40.69 Aligned_cols=64 Identities=25% Similarity=0.468 Sum_probs=47.3
Q ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCC-eecCCCCcccccCC---------CCCCeEEEEec
Q 015264 9 DEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG-REMNNAEKLSALGV---------KDEDLVMMVSN 72 (410)
Q Consensus 9 ~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~G-k~L~d~~tL~~~gI---------~~g~~i~l~~~ 72 (410)
..+...+.+.++.|+.+|+..|+..+||+++.|.+++.+ -.+......+.|-+ .+..+|++..+
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDN 393 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEec
Confidence 355667889999999999999999999999999999764 44555556665421 24566667654
No 307
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=64.35 E-value=26 Score=32.40 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=49.4
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCC-eEEEe---CCe--ecCCCCcccccCCCCCCeE
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQ-QQLLY---NGR--EMNNAEKLSALGVKDEDLV 67 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~-q~Li~---~Gk--~L~d~~tL~~~gI~~g~~i 67 (410)
|.+.|...+| ++.+.+++.+|+.+|-..|....|+...+ .-|.| +|. -|+.++++.+.+++.+...
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~ 73 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPL 73 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCE
Confidence 4678888888 67899999999999999999999987643 44554 343 3666788888766554433
No 308
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=64.30 E-value=7.2 Score=38.91 Aligned_cols=28 Identities=7% Similarity=0.116 Sum_probs=25.6
Q ss_pred CceeeechhhhhcceEEEccCCEEEECC
Q 015264 279 MEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 279 ~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
...|||..||+.+-.++|+.+++|-|..
T Consensus 391 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~ 418 (455)
T 3lpj_A 391 TGTVMGAVIMEGFYVVFDRARKRIGFAV 418 (455)
T ss_dssp SCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred CcEEEChHHhCCeEEEEECCCCEEEEEe
Confidence 4589999999999999999999999964
No 309
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=63.17 E-value=30 Score=32.35 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=51.5
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCC-eEEEe--CCe--ecCCCCcccccCCCCCCe--EEEEec
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQ-QQLLY--NGR--EMNNAEKLSALGVKDEDL--VMMVSN 72 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~-q~Li~--~Gk--~L~d~~tL~~~gI~~g~~--i~l~~~ 72 (410)
.+.|...+| .+.+.+++.+|+.+|-..|....|+...+ .-|.| +|. -|+.+++|.+.+++.+.. +++..+
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~k 100 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLAK 100 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEES
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEEE
Confidence 467788888 78899999999999999999999987633 44554 443 377778888877655543 344444
No 310
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=63.11 E-value=3 Score=31.02 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=36.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEE
Q 015264 14 SLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~ 70 (410)
.++++...||.+|.+.+ +++.....+..||+.+..+ .-|++||.|-+.
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 35667778999998765 4667777788999988755 468899988765
No 311
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=62.53 E-value=27 Score=32.68 Aligned_cols=74 Identities=8% Similarity=-0.071 Sum_probs=54.0
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCC-eEEEeC---C--eecCCCCcccccCCCCCCeEEEEecCC
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQ-QQLLYN---G--REMNNAEKLSALGVKDEDLVMMVSNAA 74 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~-q~Li~~---G--k~L~d~~tL~~~gI~~g~~i~l~~~~~ 74 (410)
+.+.|..++|....++|++.+|+.+|-..|....|+...+ .-|.|. | .-|+.++++.+........+++..+--
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frvkfy 97 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNVKFY 97 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEESSC
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEEEEe
Confidence 4678899999999999999999999999999999987543 455542 3 346677788776544445666655543
No 312
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=62.39 E-value=31 Score=34.64 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=24.3
Q ss_pred CceeeechhhhhcceEEEccCCEEEEC
Q 015264 279 MEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 279 ~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
...|||--||+.+-.++|+.+.+|-|.
T Consensus 449 ~~~ILGd~fl~~~y~vfD~~~~rIGfA 475 (478)
T 1qdm_A 449 PLWILGDVFMGPYHTVFDYGKLRIGFA 475 (478)
T ss_dssp SEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred CcEEECHHHhccEEEEEECCCCEEEEE
Confidence 457999999999999999999999884
No 313
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=62.33 E-value=5.8 Score=38.44 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=25.5
Q ss_pred CceeeechhhhhcceEEEccCCEEEECC
Q 015264 279 MEFLFGLDMLRKHQCIIDLKENVLRVGG 306 (410)
Q Consensus 279 ~d~iLG~D~L~~~~~~ID~~~~~l~i~~ 306 (410)
...|||-.||+.+-.++|+.+++|-|..
T Consensus 326 ~~~ILG~~fl~~~yvvfD~~~~rIGfA~ 353 (383)
T 2ewy_A 326 NALVIGATVMEGFYVIFDRAQKRVGFAA 353 (383)
T ss_dssp SCEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred CcEEEChHHhCCeeEEEECCCCeEEEEe
Confidence 3589999999999999999999999964
No 314
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=62.10 E-value=39 Score=26.72 Aligned_cols=68 Identities=9% Similarity=0.230 Sum_probs=48.2
Q ss_pred EEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEE---eCCe--ecCCCCcccccCCCCCCeEEEEec
Q 015264 5 VMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLL---YNGR--EMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 5 vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li---~~Gk--~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
|-+.+..-+++.+..+.|+.+++..++.+.+...+.+.|. ++|. +|++++.--.-.+.-+..|++-.+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 4455566678889999999999999999999887788886 6774 455544322223444666777654
No 315
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=61.58 E-value=17 Score=25.64 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=33.4
Q ss_pred hHHHHHHHHhc--CCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 372 FEAKVAKLVEL--GFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 372 ~e~~i~~l~~m--Gf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
.+..|+++-+| -+++++...-|+.+ |++|..++-++.|
T Consensus 17 l~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 17 LNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 35678888887 78999999999998 9999999999987
No 316
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=60.86 E-value=13 Score=29.20 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=31.5
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 374 AKVAKLVE-LGFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 374 ~~i~~l~~-mGf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
+.|.+||+ ..-+--.|.+||-.+.|+.+.|-.||++|
T Consensus 15 ~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~~ 52 (111)
T 3k6g_A 15 KIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASG 52 (111)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhCC
Confidence 34566665 58899999999999999999999999875
No 317
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=60.60 E-value=4.3 Score=30.71 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHhCCCHHHHHHhh
Q 015264 385 GREAVIQALKLFDGNEEQAAGFL 407 (410)
Q Consensus 385 ~r~~~~~aL~~~~~n~~~A~~~l 407 (410)
+++-..+||+.++||...|+..|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 46667889999999999999876
No 318
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=60.39 E-value=21 Score=26.64 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=44.2
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEec
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
+|+|.+++|+. ++++...|+.||-..|....+-.. .--..||+...-+ +-+++||+|-++..
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L~-----~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPID-----YKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECTT-----CBCCTTCBEEEEEC
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCCC-----cccCCCCEEEEEcc
Confidence 57888989986 467788999999888876654211 2234588876654 35788999988754
No 319
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=60.07 E-value=23 Score=25.05 Aligned_cols=28 Identities=18% Similarity=0.482 Sum_probs=18.1
Q ss_pred HHHHHHHhhcCHHHHHHhccCCHHHHHHHHHH
Q 015264 104 ANLMTQLFQSDPELAQVLLGNDLNKLQDLLRE 135 (410)
Q Consensus 104 P~~l~~l~~~nP~L~~ai~~~~~~~~~~~l~~ 135 (410)
+++++.|. +||+++.++ .||+ |.+.++.
T Consensus 2 ~e~~~kl~-~dPe~~~~m--~dP~-~~~~lq~ 29 (62)
T 2lnm_A 2 EEVISKIM-ENPDVAMAF--QNPR-VQAALME 29 (62)
T ss_dssp HHHHHHHT-TSHHHHHHT--TSHH-HHHHHHH
T ss_pred HHHHHHHH-cChHHHHHc--CCHH-HHHHHHH
Confidence 45566664 699999999 6773 3344443
No 320
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=58.14 E-value=23 Score=33.98 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=40.9
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCC-eecCCC-CcccccCC
Q 015264 10 EQIISLDVDPHETVENVKALLEVETQVPLQQQQLLYNG-REMNNA-EKLSALGV 61 (410)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~G-k~L~d~-~tL~~~gI 61 (410)
-....+.+.+..|+.+|++.++.+++++++.|.|+|.+ ...-+. .....|.-
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 45567788999999999999999999999999999998 443343 44555543
No 321
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=57.71 E-value=33 Score=25.52 Aligned_cols=56 Identities=16% Similarity=0.257 Sum_probs=37.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhC------C-----CcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 15 LDVDPHETVENVKALLEVETQ------V-----PLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 15 iev~~~~TV~~LK~~I~~~~g------i-----p~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
++++...||.+|.+.+..... + ......+..||+......- .+.-+++||.|.+..
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSCBCCTTCEEEEEC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCC-CCcCCCCCCEEEEeC
Confidence 456667899999999987741 1 0134567789987753211 233589999999874
No 322
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=56.13 E-value=17 Score=28.33 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=41.4
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHh---CCCcCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 11 QIISLDVDPHETVENVKALLEVET---QVPLQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~---gip~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
..+.++++...||.++-+...-.. .|......+-.+|+.... +.-+++||.|-+.+
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~-----d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL-----TDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT-----TCBCCTTCEEEECC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC-----CccCCCCCEEEEEe
Confidence 446778999999999988775422 345556778888988873 34588999999874
No 323
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=54.60 E-value=68 Score=24.34 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=43.7
Q ss_pred CEEEEEeCCCCEEEEEe-CCCCCHHHHHHHHHHHh----CCCcCC-eEE---Ee-CCeecCCCCcccccCCCCCCeEEEE
Q 015264 1 MRITVMTADEQIISLDV-DPHETVENVKALLEVET----QVPLQQ-QQL---LY-NGREMNNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev-~~~~TV~~LK~~I~~~~----gip~~~-q~L---i~-~Gk~L~d~~tL~~~gI~~g~~i~l~ 70 (410)
|+|+|+. ++..+.+-. +...||.+|-+.--.++ +-.++. ..+ -+ .|-+|+.+..|.+. +.+.+.|.-+
T Consensus 3 MKvtV~f-g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~DD~l~dV-ldD~e~i~A~ 80 (85)
T 2ns5_A 3 FKVTVCF-GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLDDILCDV-ADDKDRLVAV 80 (85)
T ss_dssp EEEEEEE-TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTTSCHHHH-SCTTEEEEEE
T ss_pred cEEEEEE-CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcccchhhh-ccCcceEEEE
Confidence 8999999 455566665 34569998876554442 332332 222 23 67889988888886 6677766543
No 324
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=54.41 E-value=11 Score=30.09 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHHhcCHHHHHHHhhcCHHHHHHh
Q 015264 97 QQHIRNDANLMTQLFQSDPELAQVL 121 (410)
Q Consensus 97 ~~~~~~nP~~l~~l~~~nP~L~~ai 121 (410)
.+....||+....|..++|+|+-|+
T Consensus 62 K~~~~~nP~~a~~LL~q~PQLAyAl 86 (109)
T 2l9b_A 62 QEWTRAHPEDAASLLELCPQLSFVT 86 (109)
T ss_dssp HHHHHHCHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHCchHHHHH
Confidence 3445667877777777788887776
No 325
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=53.55 E-value=76 Score=31.01 Aligned_cols=27 Identities=11% Similarity=0.163 Sum_probs=21.8
Q ss_pred eEEEEEeEecC--EeEEEeecCCCccccc
Q 015264 195 VMLYVDMEVNG--IPLKAFVDSGAQSTII 221 (410)
Q Consensus 195 ~~ly~~v~Ing--~~v~alVDTGA~~s~i 221 (410)
...|+++.|+. +++.+++|||++..-+
T Consensus 20 ~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv 48 (413)
T 3vla_A 20 LQYVTTINQRTPLVSENLVVDLGGRFLWV 48 (413)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCSSEEE
T ss_pred CeEEEEEEcCCCCcceEEEEeCCChhhhc
Confidence 35788899987 7899999999986554
No 326
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=58.38 E-value=2.8 Score=34.18 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=29.1
Q ss_pred HHHHHHHhc-CCCHHH-HHHHHHHhCCCHHHHHHhhhC
Q 015264 374 AKVAKLVEL-GFGREA-VIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 374 ~~i~~l~~m-Gf~r~~-~~~aL~~~~~n~~~A~~~l~~ 409 (410)
--+++|-+. |..--+ -.+||++++||...|+++|..
T Consensus 20 ~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~ 57 (129)
T 2lva_A 20 MLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTD 57 (129)
Confidence 468888886 987444 456999999999999999863
No 327
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=53.15 E-value=14 Score=28.91 Aligned_cols=37 Identities=8% Similarity=0.138 Sum_probs=29.9
Q ss_pred CEEEEEeCC-------CCEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 015264 1 MRITVMTAD-------EQIISLDVDPHETVENVKALLEVETQVP 37 (410)
Q Consensus 1 M~I~vk~~~-------g~~~~iev~~~~TV~~LK~~I~~~~gip 37 (410)
|+|+|...+ +..+.+-|+++.+..+|..+|..+++++
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 356666542 5578899999999999999999998865
No 328
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=53.06 E-value=16 Score=32.45 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.7
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHh
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLF 396 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~ 396 (410)
..++.+..|+++||++.+|.+|+.+.
T Consensus 159 ~~~ea~~AL~~LGy~~~ea~~av~~~ 184 (203)
T 1cuk_A 159 AEQEAVARLVALGYKPQEASRMVSKI 184 (203)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHS
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34789999999999999999999987
No 329
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=52.15 E-value=12 Score=38.37 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=30.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEe
Q 015264 13 ISLDVDPHETVENVKALLEVETQVPLQQQQLLY 45 (410)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~ 45 (410)
..+.|..++|+.+||+.|+..+|+|+++|||..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 357888999999999999999999999999973
No 330
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=51.25 E-value=31 Score=25.59 Aligned_cols=43 Identities=26% Similarity=0.441 Sum_probs=32.5
Q ss_pred hhCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHh-CCccccceeEEEEEeEecCEeEEEee
Q 015264 154 LYADPFDVEAQKKIEAAIRQKGIDENWAAALEH-NPEAFARVVMLYVDMEVNGIPLKAFV 212 (410)
Q Consensus 154 l~~dP~~~E~Q~~i~E~ir~~~i~~n~~~A~e~-~Pe~f~~~~~ly~~v~Ing~~v~alV 212 (410)
..-||++||...+ -+.-|+|. .||+.-.|.-||. .|.+++.++
T Consensus 35 V~L~~dePEvaa~------------AL~~A~eapn~EGwP~VYALFl----qGr~lRLll 78 (90)
T 2dbs_A 35 VLLPLDEPEVAAQ------------ALAWAMEAPNPEGWPSVYALFL----QGRPIRLLL 78 (90)
T ss_dssp EEEETTCHHHHHH------------HHHHHHSCCCSSSSCEEEEEEE----TTEEEEEEE
T ss_pred EecCCCCHHHHHH------------HHHHHHhCCCCCCChhHHHHHh----CCceeEEee
Confidence 3457888997766 67788887 9999888887774 677777665
No 331
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=51.09 E-value=51 Score=26.64 Aligned_cols=58 Identities=16% Similarity=0.239 Sum_probs=46.2
Q ss_pred EEEEeCCCCCHHHHHHHHHH-HhC-------CCcCCeEEEeCCeecCC--CCcccccCCCCCCeEEEE
Q 015264 13 ISLDVDPHETVENVKALLEV-ETQ-------VPLQQQQLLYNGREMNN--AEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~-~~g-------ip~~~q~Li~~Gk~L~d--~~tL~~~gI~~g~~i~l~ 70 (410)
+.+-|+++++.++|-+.+-. .++ |+-+.-.+..+|+.... +++|++.||..-++|.+.
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 67889999999999875543 344 44456678889999874 589999999999999886
No 332
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=50.83 E-value=18 Score=27.40 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=28.1
Q ss_pred HHHHHh-cC--CCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 376 VAKLVE-LG--FGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 376 i~~l~~-mG--f~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
+.+|-+ +| .++.+.++|--+++-|+++|++++|+
T Consensus 38 Ld~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~ 74 (83)
T 1ufz_A 38 LDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLE 74 (83)
T ss_dssp HHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 444433 46 79999999999999999999999984
No 333
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=50.73 E-value=21 Score=31.98 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.3
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHh
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLF 396 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~ 396 (410)
..++.+..|+++||++.+|.+|+.+.
T Consensus 163 ~~~ea~~AL~~LGy~~~ea~~av~~~ 188 (212)
T 2ztd_A 163 VRSPVVEALVGLGFAAKQAEEATDTV 188 (212)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35789999999999999999999876
No 334
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=50.56 E-value=26 Score=27.50 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=53.2
Q ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcC-CeEEE------eCCeecCCCCc----ccccCCCCCCeEEEEe
Q 015264 3 ITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQ-QQQLL------YNGREMNNAEK----LSALGVKDEDLVMMVS 71 (410)
Q Consensus 3 I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~-~q~Li------~~Gk~L~d~~t----L~~~gI~~g~~i~l~~ 71 (410)
|+|-..+|....|.|+.++|+.++-+++..+.++..+ ..-|+ +--|.++|... |+.+.+..+..+++.+
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F~k 91 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVFRK 91 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEECS
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEEec
Confidence 4555778999999999999999999999999887643 33443 12377888653 5667777788887765
Q ss_pred cC
Q 015264 72 NA 73 (410)
Q Consensus 72 ~~ 73 (410)
+.
T Consensus 92 r~ 93 (100)
T 1wgr_A 92 NF 93 (100)
T ss_dssp CC
T ss_pred ch
Confidence 54
No 335
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=50.51 E-value=43 Score=34.56 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=48.7
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcC-CeEEEeC---C--eecCCCCcccccCCCCCCeE
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPLQ-QQQLLYN---G--REMNNAEKLSALGVKDEDLV 67 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~-~q~Li~~---G--k~L~d~~tL~~~gI~~g~~i 67 (410)
.|.|..++| ++.|.|++.+|+.+|-..|....|+... -.-|.|. | ..|+.++++.+.+++.+..+
T Consensus 6 ~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~ 76 (575)
T 2i1j_A 6 NVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPL 76 (575)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSE
T ss_pred EEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCe
Confidence 567788888 6789999999999999999999998654 3556552 2 24666788888766555543
No 336
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=49.62 E-value=81 Score=23.77 Aligned_cols=58 Identities=12% Similarity=0.160 Sum_probs=46.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-C--CCc---CCeEEEeCC--eecCCCCcccccCCCCCCeEEEE
Q 015264 13 ISLDVDPHETVENVKALLEVET-Q--VPL---QQQQLLYNG--REMNNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~-g--ip~---~~q~Li~~G--k~L~d~~tL~~~gI~~g~~i~l~ 70 (410)
.-+.|+.+.|+.++-++++... | +++ .-.+..++| +.|..+.|+++.||++-+.|.+.
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~ 80 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDII 80 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEE
Confidence 4468999999999999998764 2 322 246778999 89999999999999999888764
No 337
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=43.56 E-value=98 Score=23.34 Aligned_cols=58 Identities=10% Similarity=0.167 Sum_probs=47.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHh-C--CCc--CCeEEEeCCee--cCCCCcccccCCCCCCeEEEE
Q 015264 13 ISLDVDPHETVENVKALLEVET-Q--VPL--QQQQLLYNGRE--MNNAEKLSALGVKDEDLVMMV 70 (410)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~-g--ip~--~~q~Li~~Gk~--L~d~~tL~~~gI~~g~~i~l~ 70 (410)
.-+.|+.+.|+.++-++++... | +.| .-.+..++|+. |..+.|+++.||++-+.|.+.
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~ 81 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVV 81 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEE
Confidence 4468999999999999998764 3 222 35788899987 889999999999999988765
No 338
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=42.87 E-value=8 Score=29.54 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHhh
Q 015264 384 FGREAVIQALKLFDGNEEQAAGFL 407 (410)
Q Consensus 384 f~r~~~~~aL~~~~~n~~~A~~~l 407 (410)
|+++-..+||+.++||...|+..|
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 567788899999999999999876
No 339
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=42.33 E-value=13 Score=29.12 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHhh
Q 015264 384 FGREAVIQALKLFDGNEEQAAGFL 407 (410)
Q Consensus 384 f~r~~~~~aL~~~~~n~~~A~~~l 407 (410)
|.++-...||+.++||...|+..|
T Consensus 58 ~Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 58 VEQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHh
Confidence 456667789999999999999876
No 340
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=42.00 E-value=12 Score=26.19 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHhh
Q 015264 384 FGREAVIQALKLFDGNEEQAAGFL 407 (410)
Q Consensus 384 f~r~~~~~aL~~~~~n~~~A~~~l 407 (410)
|+++-..+||+.+ ||...|+..|
T Consensus 21 ~Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 21 YEAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHHh-CCHHHHHHHh
Confidence 4567778899999 9999999876
No 341
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=41.66 E-value=17 Score=32.62 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=24.2
Q ss_pred eEecCEe-------EEEeecCCCcccccCHHHHHHc
Q 015264 201 MEVNGIP-------LKAFVDSGAQSTIISKSCAERC 229 (410)
Q Consensus 201 v~Ing~~-------v~alVDTGA~~s~is~~~a~~l 229 (410)
+.|||+. ..++||||.+.+.+..+.++.+
T Consensus 197 i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~i 232 (239)
T 1b5f_A 197 VLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQI 232 (239)
T ss_dssp EEETTEECCTTTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEEecccCCCCEEEEecCcchhhCCHHHHHHH
Confidence 5678765 4799999999999999988765
No 342
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=39.90 E-value=37 Score=27.52 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=40.9
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCcCC-eEEEeCCeecCCCCcccccC---CCCCCeEEEEe
Q 015264 15 LDVDPHETVENVKALLEVETQVPLQQ-QQLLYNGREMNNAEKLSALG---VKDEDLVMMVS 71 (410)
Q Consensus 15 iev~~~~TV~~LK~~I~~~~gip~~~-q~Li~~Gk~L~d~~tL~~~g---I~~g~~i~l~~ 71 (410)
+-|+.+.||++|...|.....+++++ .-|+-|+.....+.+++++- =.++..|+|.-
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEE
Confidence 45889999999999999999998876 55556887656667765541 11344666653
No 343
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.19 E-value=84 Score=24.16 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhCCCcCCeEEE--eCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 21 ETVENVKALLEVETQVPLQQQQLL--YNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~~q~Li--~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
.++++|+.+....++++....+|+ ..|..++|+.-+..+. ++..+++..
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tLp--~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLG--DNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTSC--SSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhCC--CCCEEEEEc
Confidence 479999999999999976666665 3699998875555442 444444443
No 344
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=38.07 E-value=23 Score=36.17 Aligned_cols=59 Identities=8% Similarity=0.166 Sum_probs=47.5
Q ss_pred EEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeC------CeecC-CCCccccc--CCCCCCeEEEEecC
Q 015264 15 LDVDPHETVENVKALLEVETQVPLQQQQLLYN------GREMN-NAEKLSAL--GVKDEDLVMMVSNA 73 (410)
Q Consensus 15 iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~------Gk~L~-d~~tL~~~--gI~~g~~i~l~~~~ 73 (410)
+-|+.+.+|.+|-..|....|+|++.--.+|. -..|+ ...|+.++ +|.+||+|..-+..
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~ 218 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDD 218 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECC
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecC
Confidence 46889999999999999999999976444443 23467 46899999 99999999887643
No 345
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=37.71 E-value=61 Score=25.38 Aligned_cols=49 Identities=8% Similarity=0.150 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhCCCcC--CeEEE--eCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 21 ETVENVKALLEVETQVPLQ--QQQLL--YNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 21 ~TV~~LK~~I~~~~gip~~--~q~Li--~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
.++++|+.+....++++.. ..+|+ ..|..++|+.-+..+ .++..+++..
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL--p~nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL--PSNTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS--CSCCEEEEEC
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC--CCCCEEEEEc
Confidence 4799999999999999763 34444 579999887665554 2455555543
No 346
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=35.40 E-value=41 Score=27.49 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=40.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcCC-eEEEeCCeecCCCCcccccC--CC-CCCeEEEEe
Q 015264 14 SLDVDPHETVENVKALLEVETQVPLQQ-QQLLYNGREMNNAEKLSALG--VK-DEDLVMMVS 71 (410)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~gip~~~-q~Li~~Gk~L~d~~tL~~~g--I~-~g~~i~l~~ 71 (410)
.+-|+.+.||++|...|.....+++++ .-|+-|+.....+.+++++- -+ ++..|+|.-
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Y 117 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAF 117 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEe
Confidence 346889999999999999999998877 44445665445566765542 11 344666654
No 347
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=34.42 E-value=12 Score=34.46 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred hHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHhh
Q 015264 372 FEAKVAKLVEL-GFGREAVIQALKLFDGNEEQAAGFL 407 (410)
Q Consensus 372 ~e~~i~~l~~m-Gf~r~~~~~aL~~~~~n~~~A~~~l 407 (410)
.++.|..|... |-..+=+..+|..++||.++|+.-.
T Consensus 198 q~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F 234 (250)
T 1jkg_B 198 QQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 234 (250)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44678888664 8899999999999999999998653
No 348
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=33.85 E-value=1.1e+02 Score=29.32 Aligned_cols=25 Identities=4% Similarity=0.052 Sum_probs=19.5
Q ss_pred eEEEEEeEecCEeEEEeecCCCcccccC
Q 015264 195 VMLYVDMEVNGIPLKAFVDSGAQSTIIS 222 (410)
Q Consensus 195 ~~ly~~v~Ing~~v~alVDTGA~~s~is 222 (410)
...|+++.|+. | +++|||++..-+.
T Consensus 14 ~~Y~~~i~iGt-P--v~~DTGSs~lWv~ 38 (381)
T 1t6e_X 14 SLYTIPFHDGA-S--LVLDVAGPLVWST 38 (381)
T ss_dssp CCEEEEEETTE-E--EEEETTCCCEEEC
T ss_pred cEEEEEEeCCC-E--EEEECCCCceEEe
Confidence 35788888865 5 8999999988664
No 349
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=33.81 E-value=84 Score=23.28 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=33.1
Q ss_pred ChHHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 371 DFEAKVAKLVEL-GFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 371 ~~e~~i~~l~~m-Gf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
+-+++|..+.-. .-+..|-.+|++.+||-+..|+.-|++
T Consensus 13 evdeaidnilrytnsteqqfleamestggrvriaiaklls 52 (104)
T 2l3n_A 13 EVDEAIDNILRYTNSTEQQFLEAMESTGGRVRIAIAKLLS 52 (104)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHhcCCeeehHHHHHHh
Confidence 346788888774 677888999999999999999999885
No 350
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=32.42 E-value=96 Score=25.10 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=44.4
Q ss_pred eCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcC------CeEEE---eCCe--ecCCCCc--ccccCCCCCCeEEEEec
Q 015264 7 TADEQIISLDVDPHETVENVKALLEVETQVPLQ------QQQLL---YNGR--EMNNAEK--LSALGVKDEDLVMMVSN 72 (410)
Q Consensus 7 ~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~~------~q~Li---~~Gk--~L~d~~t--L~~~gI~~g~~i~l~~~ 72 (410)
+.+..-+++.+..+.|+.+++..++.+.+...+ .+.|. ++|- +|+++.. ...++ -+..|++-.+
T Consensus 16 ~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~--~NgRLfvc~k 92 (120)
T 2dhz_A 16 MPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALG--INSHLFACTR 92 (120)
T ss_dssp CTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSC--SSEEEEEECT
T ss_pred eccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeecc--ccceEEEeeh
Confidence 444555678889999999999999999987554 67775 6773 4665433 34444 4666777654
No 351
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=31.77 E-value=2.5e+02 Score=24.61 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=34.3
Q ss_pred hHHHHHHHhhCCCCC-----HHHHHHHHHHHHHHhHH---HHHHHHHHhCCccccceeEEEEEeEecCEeEEEeecC
Q 015264 146 RQEEEMALLYADPFD-----VEAQKKIEAAIRQKGID---ENWAAALEHNPEAFARVVMLYVDMEVNGIPLKAFVDS 214 (410)
Q Consensus 146 ~~~~el~~l~~dP~~-----~E~Q~~i~E~ir~~~i~---~n~~~A~e~~Pe~f~~~~~ly~~v~Ing~~v~alVDT 214 (410)
+..+.|..+++|+.. -+++.+|.++....+-+ |||-.|- .++.. =|.|.+..+.++|-+
T Consensus 98 k~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~ekE~~IE~LLKAK-GF~DA---------VV~i~dd~V~VVVka 164 (197)
T 3tuf_A 98 KEREELNAIVSSDDATAKEKSEAYDKMTALSEVEGTEKQLETLIKTQ-GYEDA---------LVNAEGDKINITVKS 164 (197)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCSCE---------EEECSSSEEEEEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCce---------EEEecCCEEEEEEeC
Confidence 455677888889864 34566666555544444 3444433 33333 245677777778764
No 352
>2kna_A Baculoviral IAP repeat-containing protein 4; XIAP, UBA, apoptosis, ligase, metal-binding, phosphoprotein, inhibitor, thiol protease inhibitor; NMR {Homo sapiens}
Probab=31.66 E-value=27 Score=27.52 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=20.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHH----hCCCH
Q 015264 375 KVAKLVELGFGREAVIQALKL----FDGNE 400 (410)
Q Consensus 375 ~i~~l~~mGf~r~~~~~aL~~----~~~n~ 400 (410)
.|+..++|||++..+.++++. +|.|.
T Consensus 30 vV~~alemGf~~~~V~~~v~~ki~~sG~~y 59 (104)
T 2kna_A 30 MVQEAIRMGFSFKDIKKIMEEKIQISGSNY 59 (104)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHhCCCc
Confidence 688999999999998887765 45554
No 353
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=31.55 E-value=71 Score=25.28 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=38.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcCC-eEEEeCCeecCCCCcccccC--C-CCCCeEEEE
Q 015264 14 SLDVDPHETVENVKALLEVETQVPLQQ-QQLLYNGREMNNAEKLSALG--V-KDEDLVMMV 70 (410)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~gip~~~-q~Li~~Gk~L~d~~tL~~~g--I-~~g~~i~l~ 70 (410)
.+-|+.+.||++|...|....++++++ .-|+-++.....+.+++++- - .++..|+|.
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~ 107 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVA 107 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEE
Confidence 346778999999999999999998876 44545665445566776551 1 124456664
No 354
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=30.81 E-value=1.7e+02 Score=27.09 Aligned_cols=69 Identities=19% Similarity=0.233 Sum_probs=46.9
Q ss_pred EEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCc-CCeEEE--e-C---CeecCCCCcc----cccCCCCCCeEEEEe
Q 015264 3 ITVMTADEQIISLDVDPHETVENVKALLEVETQVPL-QQQQLL--Y-N---GREMNNAEKL----SALGVKDEDLVMMVS 71 (410)
Q Consensus 3 I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~-~~q~Li--~-~---Gk~L~d~~tL----~~~gI~~g~~i~l~~ 71 (410)
|.|-..+|....|.|++++|+.||-..+..+.++.. +...|+ + . -|.|.|...+ ..+....+..+.+.+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f~~ 113 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFME 113 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEEEC
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEEEe
Confidence 444466799999999999999999999888887644 334443 2 1 2677776543 445555566666543
No 355
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=30.65 E-value=1e+02 Score=23.64 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=35.1
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeE-EEeCCeec
Q 015264 10 EQIISLDVDPHETVENVKALLEVETQVPLQQQQ-LLYNGREM 50 (410)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~-Li~~Gk~L 50 (410)
.+.+.+.|++..+=-++|+.|+..+++.+.... +...||.=
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~k 68 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVK 68 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCcee
Confidence 468999999999999999999999999998764 56777643
No 356
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=30.56 E-value=50 Score=24.53 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=28.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCCC-----cCCeEEEeC
Q 015264 11 QIISLDVDPHETVENVKALLEVETQVP-----LQQQQLLYN 46 (410)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~gip-----~~~q~Li~~ 46 (410)
..+.+-|+++.+..+|..+|..+++.. ....+|-|.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYk 42 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ 42 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEE
Confidence 357889999999999999999999864 234455553
No 357
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=30.10 E-value=11 Score=33.29 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHh
Q 015264 372 FEAKVAKLVELGFGREAVIQALKLF 396 (410)
Q Consensus 372 ~e~~i~~l~~mGf~r~~~~~aL~~~ 396 (410)
.++.+..|+++||++.+|.+|+.+.
T Consensus 146 ~~ea~~AL~~LGy~~~ea~~av~~~ 170 (191)
T 1ixr_A 146 AEEAVMALAALGFKEAQARAVVLDL 170 (191)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3679999999999999999999886
No 358
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=29.78 E-value=16 Score=34.37 Aligned_cols=38 Identities=16% Similarity=0.117 Sum_probs=9.2
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHhCCCHHHHHHhhhCC
Q 015264 373 EAKVAKLVEL-GFGREAVIQALKLFDGNEEQAAGFLFGG 410 (410)
Q Consensus 373 e~~i~~l~~m-Gf~r~~~~~aL~~~~~n~~~A~~~l~~g 410 (410)
+.....+++. |.++++|.++|.+++|++-.|+-.++.|
T Consensus 245 ~r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~ 283 (306)
T 1nri_A 245 ARAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMILST 283 (306)
T ss_dssp HHHHHHHHHHSCCCC------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHHhC
Confidence 4456666664 8888889899999998888888766543
No 359
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=28.73 E-value=81 Score=25.26 Aligned_cols=59 Identities=12% Similarity=0.139 Sum_probs=40.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcCC-eEEEeCCeecCCCCcccccC--C-CCCCeEEEEec
Q 015264 14 SLDVDPHETVENVKALLEVETQVPLQQ-QQLLYNGREMNNAEKLSALG--V-KDEDLVMMVSN 72 (410)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~gip~~~-q~Li~~Gk~L~d~~tL~~~g--I-~~g~~i~l~~~ 72 (410)
.+-|+.+.||++|...|..+..+++++ .-|+-++.....+.+++++- - .++..|+|.-.
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 345778999999999999999998876 44544665445566776551 1 23556777643
No 360
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=28.59 E-value=93 Score=31.61 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=37.9
Q ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCc--CCeEEEe
Q 015264 2 RITVMTADEQIISLDVDPHETVENVKALLEVETQVPL--QQQQLLY 45 (410)
Q Consensus 2 ~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~--~~q~Li~ 45 (410)
.+.|...+|....+.++..+|+.+|-..|..+.|+.. +-.-|++
T Consensus 218 ~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 218 TSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred ceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 5778899999999999999999999999999999974 3455654
No 361
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=28.51 E-value=63 Score=23.56 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=6.2
Q ss_pred HHHhcCHHHHHHH
Q 015264 98 QHIRNDANLMTQL 110 (410)
Q Consensus 98 ~~~~~nP~~l~~l 110 (410)
+.+++||.++..|
T Consensus 23 ~~im~DP~~~~~l 35 (71)
T 2llw_A 23 AAIMQDPVMQSIL 35 (71)
T ss_dssp HHHHTCTHHHHHH
T ss_pred HHHhCCHHHHHHH
Confidence 3444555554433
No 362
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=28.48 E-value=66 Score=25.90 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=39.2
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcCCe-EEEeCCeecCCCCcccccC---CCCCCeEEEEe
Q 015264 14 SLDVDPHETVENVKALLEVETQVPLQQQ-QLLYNGREMNNAEKLSALG---VKDEDLVMMVS 71 (410)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~gip~~~q-~Li~~Gk~L~d~~tL~~~g---I~~g~~i~l~~ 71 (410)
.+-|+.+.||++|...|.....+++++- -|+-|+.....+.+++++- =.++..|+|.-
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Y 111 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTY 111 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEE
Confidence 3458899999999999999999988664 4444665445566765531 12344666653
No 363
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=27.99 E-value=32 Score=27.39 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=47.2
Q ss_pred CEEEEEeCCCCCHHHHHHHHHHHhCCCcC--CeEEEeC---CeecCCCCcccccCCCCCCeEEEEe
Q 015264 11 QIISLDVDPHETVENVKALLEVETQVPLQ--QQQLLYN---GREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 11 ~~~~iev~~~~TV~~LK~~I~~~~gip~~--~q~Li~~---Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
..+++.|..+.-|+-+.-+|-++.+++.+ +--|-.- -..|+-..||..|||+.+..++..+
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 55778899899999999888888776653 4445432 2467788999999999999988764
No 364
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=27.09 E-value=1.4e+02 Score=25.37 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=37.8
Q ss_pred EEEeCCCCCHHHHHHHHHHHhC-CC---------cCCeEEEeCCeecCCCCcccccCCCCCCeEEEEe
Q 015264 14 SLDVDPHETVENVKALLEVETQ-VP---------LQQQQLLYNGREMNNAEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~g-ip---------~~~q~Li~~Gk~L~d~~tL~~~gI~~g~~i~l~~ 71 (410)
.++++. .||.+|.+.+..... +. .....+..||+......- .+.-|++||.|.+..
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFP 82 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEEC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEEC
Confidence 456665 899999999987641 10 133466789987765322 234689999999974
No 365
>2g18_A Phycocyanobilin:ferredoxin oxidoreductase; alpha-beta-alpha sandwich; 2.50A {Anabaena SP}
Probab=25.98 E-value=75 Score=29.15 Aligned_cols=46 Identities=26% Similarity=0.548 Sum_probs=32.1
Q ss_pred eEEEEEeEEEcCEEEEEEEEEecCCCCce-eeechhhh---hcc-eEEEcc
Q 015264 253 GRIHVAPIKIGNVFYPCSFVVLDSPNMEF-LFGLDMLR---KHQ-CIIDLK 298 (410)
Q Consensus 253 g~i~~~~l~ig~~~~~~~~~Vl~~~~~d~-iLG~D~L~---~~~-~~ID~~ 298 (410)
=++|...+..|+..-..++.+.+...+|+ |+|+|++. ++. +++|+.
T Consensus 76 Rk~r~e~~~~G~~lqVLn~V~fP~~~yDLPiFG~Dlv~~~~~~~l~ilDlq 126 (253)
T 2g18_A 76 RKMHLELAKVGNMLDILHCVMFPRPEYDLPMFGCDLVGGRGQISAAIADLS 126 (253)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEECTTSCCCEEEEEEEEETTEEEEEEEEEE
T ss_pred hhhHHhhhhcCCCcEEEEEEEcCCCCCCCCeeeeeeeccCCceEEEEEECC
Confidence 34666677777766667778888777776 89999985 233 455774
No 366
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=24.93 E-value=1.5e+02 Score=22.51 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=28.2
Q ss_pred EEEEeCCC-CEEEEEeC-CCCCHHHHHHHHHHHhCCCcCCeEE
Q 015264 3 ITVMTADE-QIISLDVD-PHETVENVKALLEVETQVPLQQQQL 43 (410)
Q Consensus 3 I~vk~~~g-~~~~iev~-~~~TV~~LK~~I~~~~gip~~~q~L 43 (410)
|+-|..+. +..++.++ ...+|.+||..|..+.++-..+.-|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 55565543 33456665 5679999999999988776555554
No 367
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=24.72 E-value=28 Score=23.00 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCCHHHHHH
Q 015264 373 EAKVAKLVELGFGREAVIQ 391 (410)
Q Consensus 373 e~~i~~l~~mGf~r~~~~~ 391 (410)
+--|++||++|.+-+.|..
T Consensus 8 DmEiAkLMSLGl~id~A~~ 26 (47)
T 1pgy_A 8 DMEIARLMSLGLSIEEATE 26 (47)
T ss_dssp HHHHHHHHHHCCCSHHHHH
T ss_pred HHHHHHHHHccCChhhHHH
Confidence 4469999999998776654
No 368
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=24.59 E-value=97 Score=25.38 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=39.7
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcCCeEEE-eCCeecC-CCCccccc----CCCCCCeEEEE
Q 015264 14 SLDVDPHETVENVKALLEVETQVPLQQQQLL-YNGREMN-NAEKLSAL----GVKDEDLVMMV 70 (410)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~gip~~~q~Li-~~Gk~L~-d~~tL~~~----gI~~g~~i~l~ 70 (410)
.+-|+.+.||++|...|..+..+++++--.+ |.++.+- .+.+++++ +- ++..|+|.
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kd-eDGfLyv~ 117 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKD-EDGFLYMV 117 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCC-TTSCEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCC-CCCEEEEE
Confidence 3468899999999999999999998775544 6555454 45677654 22 34466665
No 369
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=24.49 E-value=93 Score=33.20 Aligned_cols=59 Identities=15% Similarity=0.269 Sum_probs=40.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhC--CCcCC--------eEEEeCCe--e----cCC--CCcccccCCCCCCeEEEEe
Q 015264 13 ISLDVDPHETVENVKALLEVETQ--VPLQQ--------QQLLYNGR--E----MNN--AEKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~g--ip~~~--------q~Li~~Gk--~----L~d--~~tL~~~gI~~g~~i~l~~ 71 (410)
..++++.+.|+.+|-+.+..+.. +.... .+++|... . .++ +++|+++||++|+.|.|..
T Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 790 (805)
T 2nvu_B 714 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 790 (805)
T ss_dssp EEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEEC
T ss_pred EEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEEc
Confidence 56788888999999888888533 32211 35566432 1 122 5789999999999999974
No 370
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=24.26 E-value=1.1e+02 Score=22.27 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHhcCCCHHHHHHHHHHhCCCH
Q 015264 369 GADFEAKVAKLVELGFGREAVIQALKLFDGNE 400 (410)
Q Consensus 369 ~~~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~ 400 (410)
.+..+.+|+=|.+-|.+.++...||+.++.+.
T Consensus 32 ~sp~~~K~~FL~sKGLt~eEI~~Al~ra~~~~ 63 (70)
T 2w84_A 32 QSPLATRRAFLKKKGLTDEEIDMAFQQSGTAA 63 (70)
T ss_dssp GSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCC
T ss_pred hCCHHHHHHHHHHcCCCHHHHHHHHHHccCCC
Confidence 44578899999999999999999999998753
No 371
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=24.23 E-value=47 Score=24.56 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=24.6
Q ss_pred CCceeeechhhhhcceEEEccCCEEEEC
Q 015264 278 NMEFLFGLDMLRKHQCIIDLKENVLRVG 305 (410)
Q Consensus 278 ~~d~iLG~D~L~~~~~~ID~~~~~l~i~ 305 (410)
+...|||--||+++-.+.|+.+++|-|.
T Consensus 57 ~~~~ILGd~Fl~~~y~vfD~~~~riGfA 84 (87)
T 1b5f_B 57 GPLWILGDVFMRPYHTVFDYGNLLVGFA 84 (87)
T ss_dssp SBEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred CCeEEechHHhccEEEEEECCCCEEEEE
Confidence 3468999999999999999999998874
No 372
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=23.79 E-value=1.4e+02 Score=22.83 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=34.4
Q ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCCCcCCeE-EEeCCee
Q 015264 10 EQIISLDVDPHETVENVKALLEVETQVPLQQQQ-LLYNGRE 49 (410)
Q Consensus 10 g~~~~iev~~~~TV~~LK~~I~~~~gip~~~q~-Li~~Gk~ 49 (410)
.+.+.+.|+...+=-++|+.|+..+++.+.... ++..||.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 378999999999999999999999999997764 5677764
No 373
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.71 E-value=88 Score=32.78 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=38.2
Q ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCc-CCeEEEe
Q 015264 1 MRITVMTADEQIISLDVDPHETVENVKALLEVETQVPL-QQQQLLY 45 (410)
Q Consensus 1 M~I~vk~~~g~~~~iev~~~~TV~~LK~~I~~~~gip~-~~q~Li~ 45 (410)
|.+.|...+|....++|+..+|+.+|-..|..+.|+.. +-.-|++
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 35788899999999999999999999999999999754 4456655
No 374
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=22.70 E-value=1.3e+02 Score=22.83 Aligned_cols=57 Identities=9% Similarity=0.155 Sum_probs=40.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCcCCe-EEEeCCeecC-CCCccc----ccCCCCCCeEEEEe
Q 015264 13 ISLDVDPHETVENVKALLEVETQVPLQQQ-QLLYNGREMN-NAEKLS----ALGVKDEDLVMMVS 71 (410)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~gip~~~q-~Li~~Gk~L~-d~~tL~----~~gI~~g~~i~l~~ 71 (410)
..+-|+.+.|+++|...|..+..+++++- -|+-|+..+- .+.+++ .++ ++..|+|.-
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k--~DGfLyv~Y 84 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG--SDGKLVLHY 84 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC--BTTEEEEEE
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC--CCCEEEEEE
Confidence 34678899999999999999999988764 4445665543 355654 345 455666654
No 375
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=22.66 E-value=1.5e+02 Score=27.32 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=33.4
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHhhhC
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLFDGNEEQAAGFLFG 409 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~~~n~~~A~~~l~~ 409 (410)
.++..+..+..|||++++..+.|+.-.+|.-.|.=+|+.
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~ll~ 326 (328)
T 3fe3_A 288 SDQKRIDIMVGMGYSQEEIQESLSKMKYDEITATYLLLG 326 (328)
T ss_dssp CCHHHHHHHHHTTCCHHHHHHHHHTTCCSHHHHHHHHHT
T ss_pred ccHHHHHHHHHCCCCHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 346778889999999999999999999998888777763
No 376
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=22.15 E-value=64 Score=30.87 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=23.4
Q ss_pred ChHHHHHHHHhcCCCHHHHHHHHHHhC
Q 015264 371 DFEAKVAKLVELGFGREAVIQALKLFD 397 (410)
Q Consensus 371 ~~e~~i~~l~~mGf~r~~~~~aL~~~~ 397 (410)
..|..|+.|.+|||+.+++.++|...-
T Consensus 45 ~~e~~l~~L~d~Gfs~~~i~~il~~~P 71 (335)
T 4fp9_B 45 ELERVMSSLLDMGFSNAHINELLSVRR 71 (335)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHCCCCHHHHHHHHHhCc
Confidence 468899999999999999999887754
No 377
>2x9o_A 15,16- dihydrobiliverdin-ferredoxin oxidoreductas; phycobilin synthesis, cyanobacteria, oxidoreductase, phycoerythrobilin; HET: BLA; 1.55A {Synechococcus SP}
Probab=21.82 E-value=1.2e+02 Score=27.62 Aligned_cols=45 Identities=22% Similarity=0.457 Sum_probs=33.0
Q ss_pred EEEEEeEEEcCEEEEEEEEEecCCCCce-eeechhh--h-hcce--EEEcc
Q 015264 254 RIHVAPIKIGNVFYPCSFVVLDSPNMEF-LFGLDML--R-KHQC--IIDLK 298 (410)
Q Consensus 254 ~i~~~~l~ig~~~~~~~~~Vl~~~~~d~-iLG~D~L--~-~~~~--~ID~~ 298 (410)
++|..-+..|+..-..++++.+...+|+ |||+|++ - ++++ ++|+.
T Consensus 59 k~r~~~~~~g~~lqVLh~V~fP~~~ydlPiFG~Dlv~~~~~~~l~AilDlq 109 (244)
T 2x9o_A 59 RWRVTRLDAGDSLQVFNSVAYPDYNYDHPLMGVDLLWFGARQKLVAVLDFQ 109 (244)
T ss_dssp EEEEEEEEETTTEEEEEEEEEECTTCCCCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred HHHHHHhccCCCcEEEEEEeccCCCCCCCeehhheeccCCCceEEEEEEcC
Confidence 6777778888766667778888777776 8999998 3 3343 66775
No 378
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=21.64 E-value=3.8e+02 Score=22.90 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=26.5
Q ss_pred HHhHHHHHHHhh-CCCCCHHHHHHHHHH-------HHHHhHHHHHHHHHHhCCcc
Q 015264 144 RRRQEEEMALLY-ADPFDVEAQKKIEAA-------IRQKGIDENWAAALEHNPEA 190 (410)
Q Consensus 144 ~~~~~~el~~l~-~dP~~~E~Q~~i~E~-------ir~~~i~~n~~~A~e~~Pe~ 190 (410)
......|+..|+ ++.+|++.-+.+.+. ++.++++-+.+.+-|-+|-+
T Consensus 94 l~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~KeGip~g 148 (175)
T 3lay_A 94 LISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQAGIPRG 148 (175)
T ss_dssp HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 344556776555 677887665543333 34455665666666777754
No 379
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=20.65 E-value=2.2e+02 Score=21.33 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=47.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeC-CeecCCCCcccccCCCCCCeEEEEec
Q 015264 13 ISLDVDPHETVENVKALLEVETQVPLQQQQLLYN-GREMNNAEKLSALGVKDEDLVMMVSN 72 (410)
Q Consensus 13 ~~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~-Gk~L~d~~tL~~~gI~~g~~i~l~~~ 72 (410)
..+.|+.......+-+..++++.+|+..--++-+ |--+...+|-...=+|.|+-|.|..+
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPR 86 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPR 86 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEEC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccc
Confidence 4568999998998888999999999988777755 55456667877777888999988753
No 380
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=20.60 E-value=1.3e+02 Score=23.76 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=42.8
Q ss_pred EeCCCCEEEEEeCCCCCHHHHHHHHHHHhC--------CCcCCeEEEe---CCee--cCCC-CcccccCCCCCCeEEEEe
Q 015264 6 MTADEQIISLDVDPHETVENVKALLEVETQ--------VPLQQQQLLY---NGRE--MNNA-EKLSALGVKDEDLVMMVS 71 (410)
Q Consensus 6 k~~~g~~~~iev~~~~TV~~LK~~I~~~~g--------ip~~~q~Li~---~Gk~--L~d~-~tL~~~gI~~g~~i~l~~ 71 (410)
=.++|-.+.++++.+.|+.++|..+-++.. -.++.-.+.. +|.. +.|+ +.|.+...- -.++.|+.
T Consensus 25 LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piLklve 103 (108)
T 2v1y_A 25 LLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFLKVIE 103 (108)
T ss_dssp ECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEEEEEC
T ss_pred EcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEEEEEe
Confidence 345799999999999999999998877632 2333333332 2333 6565 778887665 34555553
No 381
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=20.06 E-value=2.1e+02 Score=21.80 Aligned_cols=55 Identities=7% Similarity=0.088 Sum_probs=39.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCcCCeEEEeCCeec-CCCCcccc----cCCCCCCeEEEEec
Q 015264 14 SLDVDPHETVENVKALLEVETQVPLQQQQLLYNGREM-NNAEKLSA----LGVKDEDLVMMVSN 72 (410)
Q Consensus 14 ~iev~~~~TV~~LK~~I~~~~gip~~~q~Li~~Gk~L-~d~~tL~~----~gI~~g~~i~l~~~ 72 (410)
.+-|+.+.|+++|...|..+..+ +..-|+-|...+ ..+.++++ ++ ++..|++.-.
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk--~dg~Lyv~Ys 85 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFK--TNDELIVSYC 85 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHC--BTTEEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhC--CCCEEEEEEe
Confidence 45689999999999999999998 556666677644 34556543 44 4666777643
Done!