BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015266
         (410 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
          Length = 503

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 120/265 (45%), Gaps = 19/265 (7%)

Query: 60  AVCLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQL 117
             C DG+  GY++    GS    WL+ LEGG +C    NC  R +T R   S+K      
Sbjct: 106 VTCNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTR 163

Query: 118 PFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDSQNEGAQLY-FRGQRIWLTAMQDLM 176
             TGILS++ EENP ++N N V + YC    +SG S       Y F G  I    +++L+
Sbjct: 164 TGTGILSSQPEENPHWWNANMVFIPYCSSDVWSGASPKSDKNEYAFMGSLIIQEVVRELL 223

Query: 177 AKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK----TTKVKCLSDAGMFLDAVDVSG 232
            KG+  A   LL+G SAGG   +L+ D   +L  +    + +V+ L+D+G FLD      
Sbjct: 224 GKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNKQYRR 283

Query: 233 GHTLRNMFAGVV-----SLQEVQKNLPITCTSQL---DPTSCFFPQNLVANIKTPMFLLN 284
              +  +           ++     +P  C  Q    +  +CFF   +   ++ P+F++ 
Sbjct: 284 SDCIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFFGYKVYPTLRCPVFVVQ 343

Query: 285 AAYDAWQVQASLAPPTADP--HGYW 307
             +D  Q+       T  P   G W
Sbjct: 344 WLFDEAQLTVDNVHLTGQPVQEGQW 368


>sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2
          Length = 496

 Score = 99.8 bits (247), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 121/262 (46%), Gaps = 23/262 (8%)

Query: 60  AVCLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQL 117
             C DG+  GY++    GS    WL+ LEGG +C    NC  R  T R   S++   +  
Sbjct: 99  VTCNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTR 156

Query: 118 PFTGILSNKAEENPDFFNWNRVKLRYCDGASFSG-DSQNEGAQLYFRGQRIWLTAMQDLM 176
             TGILS++ EENP ++N N V + YC    +SG  S++E  +  F G  I    +++L+
Sbjct: 157 TGTGILSSQPEENPYWWNANMVFIPYCSSDVWSGASSKSEKNEYAFMGALIIQEVVRELL 216

Query: 177 AKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK----TTKVKCLSDAGMFL------- 225
            +G+  A   LL+G SAGG   +L+ D   +   K      +V+ L+D+G FL       
Sbjct: 217 GRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNKQYRH 276

Query: 226 -DAVDVSGGHTLRNMFAGVVSLQEVQKNLPITCTSQL---DPTSCFFPQNLVANIKTPMF 281
            D VD         +  G+     V   +P  C  Q    +  +CFF   +   ++ P+F
Sbjct: 277 TDCVDTITCAPTEAIRRGIRYWNGV---VPERCRRQFQEGEEWNCFFGYKVYPTLRCPVF 333

Query: 282 LLNAAYDAWQVQASLAPPTADP 303
           ++   +D  Q+       T  P
Sbjct: 334 VVQWLFDEAQLTVDNVHLTGQP 355


>sp|P33671|SDC3_RAT Syndecan-3 OS=Rattus norvegicus GN=Sdc3 PE=2 SV=3
          Length = 442

 Score = 33.1 bits (74), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 16  SASGFFEDLDARETSLSYLENDA-AATSEPLMVPLTLIQGADS 57
           S SG+FE     ET++ ++ + A AA + P M+P T+IQ  D+
Sbjct: 80  SGSGYFEQESGLETAMRFIPDIALAAPTAPAMLPTTVIQPVDT 122


>sp|Q8L828|COB23_ARATH Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2
           SV=1
          Length = 909

 Score = 33.1 bits (74), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 287 YDAWQVQASLAPPTADPHGYWSDCKSDHAHCNSSQIQFFQDFRNQMLNAVEVFSKSN 343
           ++ WQV  S+   TA+  G ++  ++  +H +   I   + FRN  + A E     N
Sbjct: 799 FEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEESLENGN 855


>sp|Q64519|SDC3_MOUSE Syndecan-3 OS=Mus musculus GN=Sdc3 PE=2 SV=2
          Length = 442

 Score = 32.7 bits (73), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 16  SASGFFEDLDARETSLSYLENDA-AATSEPLMVPLTLIQGADS 57
           S SG+FE     ET++ ++ + A AA + P M+P T+IQ  D+
Sbjct: 80  SGSGYFEQESGLETAMRFIPDMALAAPTAPAMLPTTVIQPVDT 122


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.135    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,733,281
Number of Sequences: 539616
Number of extensions: 6447556
Number of successful extensions: 12651
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12639
Number of HSP's gapped (non-prelim): 6
length of query: 410
length of database: 191,569,459
effective HSP length: 120
effective length of query: 290
effective length of database: 126,815,539
effective search space: 36776506310
effective search space used: 36776506310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)