Your job contains 1 sequence.
>015267
MTNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF
YHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLV
TVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI
LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK
ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC
ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS
SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANEG
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 015267
(410 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:504956103 - symbol:GTF2H2 "general transcripti... 1487 2.0e-152 1
UNIPROTKB|E2R345 - symbol:GTF2H2 "Uncharacterized protein... 766 5.0e-76 1
DICTYBASE|DDB_G0272362 - symbol:gtf2h2 "TFIIH subunit" sp... 765 6.3e-76 1
UNIPROTKB|I3LKI8 - symbol:GTF2H2 "Uncharacterized protein... 758 3.5e-75 1
UNIPROTKB|Q13888 - symbol:GTF2H2 "General transcription f... 754 9.3e-75 1
UNIPROTKB|Q6P1K8 - symbol:GTF2H2C "General transcription ... 754 9.3e-75 1
UNIPROTKB|G3X7P1 - symbol:GTF2H2 "General transcription f... 752 1.5e-74 1
UNIPROTKB|Q2TBV5 - symbol:GTF2H2 "General transcription f... 752 1.5e-74 1
ZFIN|ZDB-GENE-030131-1959 - symbol:gtf2h2 "general transc... 751 1.9e-74 1
POMBASE|SPCC1682.07 - symbol:ssl1 "transcription factor T... 746 6.5e-74 1
RGD|1310499 - symbol:Gtf2h2 "general transcription factor... 743 1.4e-73 1
MGI|MGI:1345669 - symbol:Gtf2h2 "general transcription fa... 737 5.9e-73 1
SGD|S000003995 - symbol:SSL1 "Subunit of the core form of... 735 9.6e-73 1
UNIPROTKB|F6XXE1 - symbol:GTF2H2 "Uncharacterized protein... 734 1.2e-72 1
UNIPROTKB|F5GZM1 - symbol:GTF2H2C "General transcription ... 705 1.4e-69 1
UNIPROTKB|J3KQC7 - symbol:GTF2H2 "General transcription f... 705 1.4e-69 1
UNIPROTKB|E1C9E6 - symbol:LOC100858972 "Uncharacterized p... 696 1.3e-68 1
UNIPROTKB|E2R5I8 - symbol:GTF2H2 "Uncharacterized protein... 688 9.2e-68 1
FB|FBgn0037202 - symbol:Ssl1 "Ssl1" species:7227 "Drosoph... 686 1.5e-67 1
ASPGD|ASPL0000017788 - symbol:AN4283 species:162425 "Emer... 684 2.4e-67 1
WB|WBGene00011814 - symbol:T16H12.4 species:6239 "Caenorh... 609 2.2e-59 1
CGD|CAL0004620 - symbol:orf19.1457 species:5476 "Candida ... 304 5.4e-56 2
GENEDB_PFALCIPARUM|MAL13P1.76 - symbol:MAL13P1.76 "TFIIH ... 450 1.5e-42 1
UNIPROTKB|Q8IEG6 - symbol:Ssl-like protein "TFIIH basal t... 450 1.5e-42 1
UNIPROTKB|D6RID8 - symbol:GTF2H2C "General transcription ... 364 2.0e-33 1
UNIPROTKB|D6RJD3 - symbol:GTF2H2C "General transcription ... 221 6.4e-18 1
UNIPROTKB|D4A6E9 - symbol:Gtf2h2 "General transcription f... 221 6.4e-18 1
UNIPROTKB|D6RGC9 - symbol:GTF2H2C "General transcription ... 175 8.7e-13 1
>TAIR|locus:504956103 [details] [associations]
symbol:GTF2H2 "general transcription factor II H2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005675 "holo TFIIH complex" evidence=IGI] [GO:0006289
"nucleotide-excision repair" evidence=IGI] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IGI]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR001841
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS50089 PROSITE:PS50234
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 EMBL:CP002684
GO:GO:0008270 GO:GO:0006357 EMBL:AC005322 GO:GO:0003743
GO:GO:0006289 GO:GO:0005675 HOGENOM:HOG000159415 KO:K03142
OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HSSP:Q13888 EMBL:AF499443 EMBL:AK229479 IPI:IPI00537421 PIR:E86184
RefSeq:NP_683275.2 UniGene:At.43339 ProteinModelPortal:Q9ZVN9
SMR:Q9ZVN9 STRING:Q9ZVN9 PRIDE:Q9ZVN9 EnsemblPlants:AT1G05055.1
GeneID:839332 KEGG:ath:AT1G05055 TAIR:At1g05055 InParanoid:Q9ZVN9
PhylomeDB:Q9ZVN9 ProtClustDB:CLSN2690701 Genevestigator:Q9ZVN9
Uniprot:Q9ZVN9
Length = 421
Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
Identities = 282/391 (72%), Positives = 314/391 (80%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK------- 83
WER+Y DDRSWE LQEDESG LRPIDNSA YHAQYRRRLR S A RIQK
Sbjct: 26 WERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLIRYLY 85
Query: 84 --------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
AAEMDFRPSRMA++AK VEAF+REFFDQNPLSQIGLV++K+GVA+ LTDLGG
Sbjct: 86 IVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLTDLGG 145
Query: 136 SPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
SPE+HIKALMGKL GDSSLQNAL+LV L+Q+PSYGHREVLILYSAL TCDPGDIME
Sbjct: 146 SPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPGDIME 205
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXX 255
TIQKCK+SK+RCSVIGLSAEMFICKHLCQ+TGG YSVA+DE H K+L++EH
Sbjct: 206 TIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAE 265
Query: 256 XXXXNLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 315
NLIKMGFPQRA EGS++ICSCHKEVK+G GY CPRCKARVC+LPT+C ICGL LVS
Sbjct: 266 FAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVS 325
Query: 316 SPHLARSYHHLFPIAPFDEVTPLC-LNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKC 374
SPHLARSYHHLFPIAPFDEV L LND R + +CFGCQQSL+ +GNKP V C KC
Sbjct: 326 SPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVTCRKC 385
Query: 375 KKHFCLECDIYIHESLHNCPGCESLRHSNPI 405
K +FCL+CDIYIHESLHNCPGCES+ +
Sbjct: 386 KHYFCLDCDIYIHESLHNCPGCESIHRPKSV 416
>UNIPROTKB|E2R345 [details] [associations]
symbol:GTF2H2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
GeneTree:ENSGT00490000043395 KO:K03142 OMA:ECKVCGL
PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622 CTD:2966
EMBL:AAEX03001498 EMBL:AAEX03001499 RefSeq:XP_535266.2
Ensembl:ENSCAFT00000012468 Ensembl:ENSCAFT00000047120 GeneID:478089
KEGG:cfa:478089 NextBio:20853464 Uniprot:E2R345
Length = 395
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 164/389 (42%), Positives = 230/389 (59%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKH 127
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 ITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIK 187
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H
Sbjct: 188 TLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSEC 247
Query: 259 XNLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+
Sbjct: 248 -SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECK 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
ICGL LVS+PHLARSYHHLFP+ PF E+ PL + N R C+GCQ L +
Sbjct: 307 ICGLTLVSAPHLARSYHHLFPLDPFQEI-PL---EEHNGERF-CYGCQGELKDQH----V 357
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 YV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>DICTYBASE|DDB_G0272362 [details] [associations]
symbol:gtf2h2 "TFIIH subunit" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 InterPro:IPR015880 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327 SMART:SM00355
SMART:SM01047 dictyBase:DDB_G0272362 InterPro:IPR007198
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GenomeReviews:CM000151_GR
GO:GO:0006366 EMBL:AAFI02000008 GO:GO:0006289 GO:GO:0005675
eggNOG:COG5151 KO:K03142 PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 HSSP:Q13888 RefSeq:XP_645146.1
ProteinModelPortal:Q86KZ2 STRING:Q86KZ2 PRIDE:Q86KZ2
EnsemblProtists:DDB0231032 GeneID:8618316 KEGG:ddi:DDB_G0272362
OMA:PRIADDE ProtClustDB:CLSZ2729241 Uniprot:Q86KZ2
Length = 461
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 159/392 (40%), Positives = 234/392 (59%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS-LVATTARIQKAAE--- 86
WE + +++W + EDE G LRP + R + +DR +++ R+++ +
Sbjct: 43 WENRF--EKTWLTIDEDEHG-LRPSNQEERNTRNRRLKNKDRDGILSQDQRVRRGMQRHL 99
Query: 87 ------------MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
D +PSR V+ + VE F++EFFDQNP+SQ+ ++ K+ A +++L
Sbjct: 100 CLILDLSKTLSNQDLKPSRYQVLLQNVELFIKEFFDQNPISQLSIIITKNSKAEKISELS 159
Query: 135 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
G+ HI+A+ + G+ S+QN+L++ L +P YG REVL ++S+L+TCDP +
Sbjct: 160 GNRLRHIQAMKDAIAMEGEPSIQNSLEVALSSLCYVPKYGSREVLFIFSSLTTCDPSSLQ 219
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXX 254
+TIQ K IR S I ++AE++ICK + + T G+ V L+E HF E +M
Sbjct: 220 KTIQSLKNESIRVSFIHMAAELYICKAIAEQTNGTSKVILNEEHFNESLMLKCQPPPTIG 279
Query: 255 XXXXXNLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 314
L++MGFPQ+ S C CH+++K GY CPRC + CELPTDC+IC L LV
Sbjct: 280 KTEAA-LVEMGFPQQITSTVPSPCICHEKMKYS-GYICPRCGVKSCELPTDCQICNLSLV 337
Query: 315 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP--GLYVACP 372
SSPHLARSYHHLF I F+EV LN +N TC GC LSS K L+ +CP
Sbjct: 338 SSPHLARSYHHLFQIPLFNEVNWKELN--KN---VTCIGC----LSSSEKSILSLFFSCP 388
Query: 373 KCKKHFCLECDIYIHESLHNCPGCES-LRHSN 403
+C++ FCL+CD++IHESLHNCPGCE+ L+++N
Sbjct: 389 RCQEIFCLDCDLFIHESLHNCPGCENKLQNTN 420
>UNIPROTKB|I3LKI8 [details] [associations]
symbol:GTF2H2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 GO:GO:0005634 GO:GO:0006355
GO:GO:0008270 GO:GO:0006281 GeneTree:ENSGT00490000043395
OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
EMBL:FP565272 Ensembl:ENSSSCT00000023904 Uniprot:I3LKI8
Length = 395
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 162/389 (41%), Positives = 230/389 (59%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVIEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKH 127
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I +L + C+G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 ITSLKKAVDMTCNGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIK 187
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H
Sbjct: 188 TLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSEC 247
Query: 259 XNLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+
Sbjct: 248 -SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECK 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +
Sbjct: 307 ICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGERF-CYGCQGELKDQH----V 357
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
Y+ C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 YI-CSVCQHVFCVDCDVFVHDSLHCCPGC 385
>UNIPROTKB|Q13888 [details] [associations]
symbol:GTF2H2 "General transcription factor IIH subunit 2"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0002031 "G-protein
coupled receptor internalization" evidence=IMP] [GO:0047485
"protein N-terminus binding" evidence=IPI] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IDA;TAS]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005675
"holo TFIIH complex" evidence=IDA] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=NAS] [GO:0008135
"translation factor activity, nucleic acid binding" evidence=TAS]
[GO:0009411 "response to UV" evidence=TAS] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 Reactome:REACT_116125
GO:GO:0009411 GO:GO:0016032 GO:GO:0046872 GO:GO:0002031
GO:GO:0008270 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0003700
GO:GO:0008135 GO:GO:0006368 GO:GO:0006367 Reactome:REACT_1788
EMBL:U80017 GO:GO:0005675 GO:GO:0006370 GO:GO:0000718 GO:GO:0050434
GO:GO:0006363 GO:GO:0006362 GO:GO:0006361 GO:GO:0006283
eggNOG:COG5151 HOGENOM:HOG000159415 KO:K03142 OMA:ECKVCGL
PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622 UniGene:Hs.191356
HOVERGEN:HBG059468 CTD:2966 OrthoDB:EOG4M0F1X EMBL:Z30094
EMBL:AF078847 EMBL:U21911 EMBL:U21910 EMBL:BC005345 IPI:IPI00426640
PIR:S44454 RefSeq:NP_001506.1 UniGene:Hs.607501 PDB:1Z60
PDBsum:1Z60 ProteinModelPortal:Q13888 SMR:Q13888 DIP:DIP-786N
IntAct:Q13888 STRING:Q13888 PhosphoSite:Q13888 DMDM:17380326
PaxDb:Q13888 PRIDE:Q13888 DNASU:2966 Ensembl:ENST00000274400
Ensembl:ENST00000330280 Ensembl:ENST00000522323 GeneID:2966
KEGG:hsa:2966 UCSC:uc003kau.4 GeneCards:GC05M070366 HGNC:HGNC:4656
MIM:601748 neXtProt:NX_Q13888 PharmGKB:PA29042 InParanoid:Q13888
PhylomeDB:Q13888 EvolutionaryTrace:Q13888 GenomeRNAi:2966
NextBio:11756 ArrayExpress:Q13888 Bgee:Q13888 CleanEx:HS_GTF2H2
Genevestigator:Q13888 GermOnline:ENSG00000145736 Uniprot:Q13888
Length = 395
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 163/389 (41%), Positives = 229/389 (58%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKH 127
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 ITSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIK 187
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H
Sbjct: 188 TLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSEC 247
Query: 259 XNLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+
Sbjct: 248 -SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECK 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +
Sbjct: 307 ICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGERF-CYGCQGELKDQH----V 357
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 YV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>UNIPROTKB|Q6P1K8 [details] [associations]
symbol:GTF2H2C "General transcription factor IIH subunit
2-like protein" species:9606 "Homo sapiens" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327 SMART:SM01047
InterPro:IPR007198 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006281 GO:GO:0006351 EMBL:AC147575
eggNOG:COG5151 HOGENOM:HOG000159415 KO:K03142 PANTHER:PTHR12695
Pfam:PF04056 TIGRFAMs:TIGR00622 EMBL:AK292361 EMBL:AK315282
EMBL:BC064557 EMBL:BC065021 EMBL:BC105980 EMBL:BC171860
IPI:IPI00738524 RefSeq:NP_001035955.1 RefSeq:NP_001092198.1
UniGene:Hs.191356 UniGene:Hs.422901 HSSP:Q13888
ProteinModelPortal:Q6P1K8 SMR:Q6P1K8 STRING:Q6P1K8
PhosphoSite:Q6P1K8 PaxDb:Q6P1K8 PRIDE:Q6P1K8
Ensembl:ENST00000380729 Ensembl:ENST00000510979
Ensembl:ENST00000574713 Ensembl:ENST00000577126 GeneID:728340
GeneID:730394 KEGG:hsa:728340 KEGG:hsa:730394 UCSC:uc003jwx.4
CTD:728340 CTD:730394 GeneCards:GC05Mr69870 GeneCards:GC05P068856
HGNC:HGNC:31394 HGNC:HGNC:35418 neXtProt:NX_Q6P1K8
PharmGKB:PA164720349 HOVERGEN:HBG059468 InParanoid:Q6P1K8
OMA:DIMETIA NextBio:126855 ArrayExpress:Q6P1K8 Bgee:Q6P1K8
Genevestigator:Q6P1K8 Uniprot:Q6P1K8
Length = 395
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 163/389 (41%), Positives = 229/389 (58%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKH 127
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 ITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIK 187
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H
Sbjct: 188 TLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSSSEC 247
Query: 259 XNLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+
Sbjct: 248 -SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECK 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +
Sbjct: 307 ICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGERF-CYGCQGELKDQH----V 357
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 YV-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>UNIPROTKB|G3X7P1 [details] [associations]
symbol:GTF2H2 "General transcription factor IIH subunit 2"
species:9913 "Bos taurus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 InterPro:IPR015880 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM00355 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
GeneTree:ENSGT00490000043395 OMA:ECKVCGL PANTHER:PTHR12695
Pfam:PF04056 TIGRFAMs:TIGR00622 EMBL:DAAA02050051
Ensembl:ENSBTAT00000040362 Uniprot:G3X7P1
Length = 395
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 161/389 (41%), Positives = 228/389 (58%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKH 127
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 ITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIK 187
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H
Sbjct: 188 SLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPASSNSEC 247
Query: 259 XNLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+
Sbjct: 248 -SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECK 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+ CQ L +
Sbjct: 307 ICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGERF-CYACQGELKDQH----V 357
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 YV-CSVCQNVFCVDCDVFVHDSLHCCPGC 385
>UNIPROTKB|Q2TBV5 [details] [associations]
symbol:GTF2H2 "General transcription factor IIH subunit 2"
species:9913 "Bos taurus" [GO:0006468 "protein phosphorylation"
evidence=ISS] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0004672 "protein kinase activity" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 InterPro:IPR015880 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327 SMART:SM00355
SMART:SM01047 InterPro:IPR007198 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006281 GO:GO:0006468 GO:GO:0006366
GO:GO:0005675 eggNOG:COG5151 HOGENOM:HOG000159415 KO:K03142
PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HOVERGEN:HBG059468 EMBL:BC109593 IPI:IPI00695858
RefSeq:NP_001033619.1 UniGene:Bt.58967 ProteinModelPortal:Q2TBV5
SMR:Q2TBV5 STRING:Q2TBV5 PRIDE:Q2TBV5 GeneID:511829 KEGG:bta:511829
CTD:2966 InParanoid:Q2TBV5 OrthoDB:EOG4M0F1X NextBio:20870116
Uniprot:Q2TBV5
Length = 395
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 161/389 (41%), Positives = 228/389 (58%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKH 127
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 ITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIK 187
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H
Sbjct: 188 SLKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPASSNSEC 247
Query: 259 XNLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+
Sbjct: 248 -SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECK 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+ CQ L +
Sbjct: 307 ICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGERF-CYACQGELKDQH----V 357
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 YV-CSVCQNVFCVDCDVFVHDSLHCCPGC 385
>ZFIN|ZDB-GENE-030131-1959 [details] [associations]
symbol:gtf2h2 "general transcription factor IIH,
polypeptide 2" species:7955 "Danio rerio" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 ZFIN:ZDB-GENE-030131-1959
GO:GO:0005634 GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
eggNOG:COG5151 GeneTree:ENSGT00490000043395 HOGENOM:HOG000159415
KO:K03142 OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 HSSP:Q13888 HOVERGEN:HBG059468 CTD:2966
OrthoDB:EOG4M0F1X EMBL:BX510923 EMBL:BC045397 IPI:IPI00493468
RefSeq:NP_963875.1 UniGene:Dr.1630 SMR:Q7ZVV4 STRING:Q7ZVV4
Ensembl:ENSDART00000007587 GeneID:323239 KEGG:dre:323239
InParanoid:Q7ZVV4 NextBio:20808147 Uniprot:Q7ZVV4
Length = 392
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 167/389 (42%), Positives = 228/389 (58%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRR--------RL-RDRSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R RL R L
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEDILFQAKRKRVFESHGQVRLGMMRHLFVIIDSS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++T K+ A LTDL G+P+ HI
Sbjct: 69 RSMEDQDLKPNRLTSTLKLMEHFVEEYFDQNPISQIGIITTKNKRAEKLTDLAGNPKKHI 128
Query: 142 KALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
AL + C G+ SL N+L++ L +P++ REVL+++S+L+TCDPG+I E I+
Sbjct: 129 TALRKAVDSTCVGEPSLYNSLNMALQTLKHMPAHTSREVLVIFSSLTTCDPGNIYELIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXXX 259
KIR SVIGLSAE+ +C L ++TGGSY+V LDESHFKEL++ H
Sbjct: 189 LNGLKIRVSVIGLSAEVRVCTILTRETGGSYNVILDESHFKELLLLHVKPPPASSSSEC- 247
Query: 260 NLIKMGFPQRA--------GEGSISIC----SCHKEVKVGVGYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ S E+ +G GY CP+C+A+ ELP +C+
Sbjct: 248 SLIRMGFPQHVIASLSDQDAKPSFSMAHLDSSSEPELSLG-GYYCPQCRAKYTELPVECK 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
+CGL LVS+PHLARS+HHLFP+ F E TPL C CQ L K
Sbjct: 307 VCGLTLVSAPHLARSFHHLFPLEAFQE-TPL----EEYEGERFCEACQGEL-----KDKS 356
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
C CKK FC+ECDI+IH++LH CPGC
Sbjct: 357 VFTCLACKKVFCVECDIFIHDTLHCCPGC 385
>POMBASE|SPCC1682.07 [details] [associations]
symbol:ssl1 "transcription factor TFIIH complex subunit
Ssl1" species:4896 "Schizosaccharomyces pombe" [GO:0000439 "core
TFIIH complex" evidence=ISO] [GO:0000991 "core RNA polymerase II
binding transcription factor activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=NAS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006367 "transcription initiation
from RNA polymerase II promoter" evidence=IC] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327 SMART:SM01047
PomBase:SPCC1682.07 InterPro:IPR007198 GO:GO:0005829 GO:GO:0006355
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0008270
GO:GO:0006281 GO:GO:0006367 GO:GO:0000991 GO:GO:0005675
GO:GO:0000439 eggNOG:COG5151 HOGENOM:HOG000159415 KO:K03142
OMA:ECKVCGL OrthoDB:EOG4DJP4V PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 EMBL:AF017646 EMBL:AB016221 PIR:T43534
RefSeq:NP_587800.1 ProteinModelPortal:O74995 IntAct:O74995
STRING:O74995 EnsemblFungi:SPCC1682.07.1 GeneID:2539194
KEGG:spo:SPCC1682.07 NextBio:20800365 Uniprot:O74995
Length = 421
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 156/387 (40%), Positives = 214/387 (55%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y RSW+ +QED G L + + +R LRD R +V
Sbjct: 39 WEGEY--QRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLLRDTTPLQRGIIRHMVLVLDLS 96
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
E DF R + K FV EFF+QNP+SQ+ ++ V DG+A+ +TDL G+P+SHI
Sbjct: 97 NSMEERDFHHKRFDLQIKYASEFVLEFFEQNPISQLSIIGVMDGIAHRITDLHGNPQSHI 156
Query: 142 KALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 201
+ L CSG+ SLQNAL++ + LS I S+G REVLI++ ++ + DPGDI +TI
Sbjct: 157 QKLKSLRDCSGNFSLQNALEMARASLSHIASHGTREVLIIFGSILSSDPGDIFKTIDALV 216
Query: 202 ESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHXXX-XXXXXXX 256
IR ++GL+AE+ ICK +C T S Y V + E HF+EL++E
Sbjct: 217 HDSIRVRIVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPPATDSAKT 276
Query: 257 XXXNLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSS 316
+L+ MGFP + E S+C+CH G G+ CPRCKA+VC LP +C C L L+ S
Sbjct: 277 TDASLVMMGFPSKVVEQLPSLCACHSIPSRG-GFHCPRCKAKVCTLPIECPSCSLVLILS 335
Query: 317 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP------GLYVA 370
HLARSYHHLFP+ + E+ P N P++ + CF CQ P + A
Sbjct: 336 THLARSYHHLFPLKNWSEI-PWSAN-PKS---THCFACQLPFPKPPVSPFDESTSSMRYA 390
Query: 371 CPKCKKHFCLECDIYIHESLHNCPGCE 397
CP CK HFCL+CD++ HE LH C GC+
Sbjct: 391 CPSCKNHFCLDCDVFAHEQLHECYGCQ 417
>RGD|1310499 [details] [associations]
symbol:Gtf2h2 "general transcription factor IIH, polypeptide 2"
species:10116 "Rattus norvegicus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0002031 "G-protein coupled receptor
internalization" evidence=ISO] [GO:0004672 "protein kinase
activity" evidence=ISO;ISS] [GO:0005675 "holo TFIIH complex"
evidence=ISO;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0006468 "protein
phosphorylation" evidence=ISO;ISS] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO;ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISO;ISS] [GO:0047485 "protein
N-terminus binding" evidence=ISO] InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 RGD:1310499 GO:GO:0006355
GO:GO:0046872 GO:GO:0008270 GO:GO:0006281 GO:GO:0006468
GO:GO:0006366 GO:GO:0005675 eggNOG:COG5151
GeneTree:ENSGT00490000043395 HOGENOM:HOG000159415 KO:K03142
PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HOVERGEN:HBG059468 CTD:2966 OrthoDB:EOG4M0F1X EMBL:BC126097
IPI:IPI00776942 RefSeq:NP_001070896.1 UniGene:Rn.144260
ProteinModelPortal:A0JN27 SMR:A0JN27 STRING:A0JN27
PhosphoSite:A0JN27 Ensembl:ENSRNOT00000061183 GeneID:294693
KEGG:rno:294693 UCSC:RGD:1310499 NextBio:638415 ArrayExpress:A0JN27
Genevestigator:A0JN27 Uniprot:A0JN27
Length = 396
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 160/390 (41%), Positives = 227/390 (58%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKH 127
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 ITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIK 187
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H
Sbjct: 188 TLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPASSGSEC 247
Query: 259 XNLIKMGFPQRA------GEGSISICSCHKE---VKVGV---GYTCPRCKARVCELPTDC 306
+LI+MGFPQ + S H + + G+ GY CP+C+A+ CELP +C
Sbjct: 248 -SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCELPVEC 306
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
+ICGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 307 KICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGELKDQH---- 357
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 VYV-CTVCRNVFCVDCDVFVHDSLHCCPGC 386
>MGI|MGI:1345669 [details] [associations]
symbol:Gtf2h2 "general transcription factor II H,
polypeptide 2" species:10090 "Mus musculus" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0002031 "G-protein coupled receptor
internalization" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=ISO]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS50234
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 MGI:MGI:1345669
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
GO:GO:0006468 GO:GO:0006366 EMBL:AF242432 GO:GO:0005675
eggNOG:COG5151 GeneTree:ENSGT00490000043395 HOGENOM:HOG000159415
KO:K03142 OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 HOVERGEN:HBG059468 CTD:2966 OrthoDB:EOG4M0F1X
IPI:IPI00279701 RefSeq:NP_071294.3 UniGene:Mm.272533
ProteinModelPortal:Q9JIB4 SMR:Q9JIB4 IntAct:Q9JIB4 STRING:Q9JIB4
PhosphoSite:Q9JIB4 PaxDb:Q9JIB4 PRIDE:Q9JIB4
Ensembl:ENSMUST00000066984 GeneID:23894 KEGG:mmu:23894
UCSC:uc007rqu.2 ChiTaRS:GTF2H2 NextBio:303657 Bgee:Q9JIB4
CleanEx:MM_GTF2H2 Genevestigator:Q9JIB4
GermOnline:ENSMUSG00000021639 Uniprot:Q9JIB4
Length = 396
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 158/390 (40%), Positives = 228/390 (58%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDE+G L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKH 127
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 ITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIK 187
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H
Sbjct: 188 TLKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPASSSSEC 247
Query: 259 XNLIKMGFPQRA------GEGSISICSCHKE---VKVGV---GYTCPRCKARVCELPTDC 306
+LI+MGFPQ + S H + + G+ GY CP+C+A+ CELP +C
Sbjct: 248 -SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLGGYFCPQCRAKYCELPVEC 306
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
+ICGL LVS+PHLARSYHHLFP+ F E++ L + + C+GCQ L
Sbjct: 307 KICGLTLVSAPHLARSYHHLFPLDAFQEIS---LEE--YKGERFCYGCQGELKDQH---- 357
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 VYV-CTVCQNVFCVDCDVFVHDSLHCCPGC 386
>SGD|S000003995 [details] [associations]
symbol:SSL1 "Subunit of the core form of RNA polymerase
transcription factor TFIIH" species:4932 "Saccharomyces cerevisiae"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA;IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA;IDA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=IDA] [GO:0000990 "core RNA polymerase binding
transcription factor activity" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005675 "holo TFIIH complex" evidence=IDA] [GO:0070816
"phosphorylation of RNA polymerase II C-terminal domain"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 InterPro:IPR015880
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS50234 SMART:SM00327
SMART:SM00355 SMART:SM01047 SGD:S000003995 InterPro:IPR007198
GO:GO:0046872 GO:GO:0006413 GO:GO:0008270 EMBL:BK006945
GO:GO:0006366 GO:GO:0006289 GO:GO:0070816 GO:GO:0005675
GO:GO:0000439 GO:GO:0000112 EMBL:L26523 EMBL:Z17385 EMBL:Z73177
EMBL:AY692893 PIR:A46394 RefSeq:NP_013105.1
ProteinModelPortal:Q04673 SMR:Q04673 DIP:DIP-2435N IntAct:Q04673
MINT:MINT-629517 STRING:Q04673 PaxDb:Q04673 PeptideAtlas:Q04673
EnsemblFungi:YLR005W GeneID:850691 KEGG:sce:YLR005W CYGD:YLR005w
eggNOG:COG5151 GeneTree:ENSGT00490000043395 HOGENOM:HOG000159415
KO:K03142 OMA:ECKVCGL OrthoDB:EOG4DJP4V NextBio:966710
Genevestigator:Q04673 GermOnline:YLR005W PANTHER:PTHR12695
Pfam:PF04056 TIGRFAMs:TIGR00622 Uniprot:Q04673
Length = 461
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 161/391 (41%), Positives = 224/391 (57%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVATTA 79
AWE RSW+ ++ D+ G + + S A+ +R + RSL+ T
Sbjct: 75 AWEDEIK--RSWDLVKVDDEGDMASLVAS-IVEARKKRTAKKNITPYQRGIIRSLILTLD 131
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
+ E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ + G+P+
Sbjct: 132 CSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSGNPQD 191
Query: 140 HIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
HI AL K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGDI +TI
Sbjct: 192 HIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDIHQTI 251
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTG-GS---YSVALDESHFKELIMEHXXXXXXX 253
KIR V+GLSA++ ICK LC+ T G Y + LDE+H KEL E
Sbjct: 252 DSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTPLPVN 311
Query: 254 XXXXXXNLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQL 313
L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C C L L
Sbjct: 312 KINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCCDLML 370
Query: 314 VSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGLYVA-- 370
+ S HLARSYHHL P+ F EV P + RS CF CQ + +K G +
Sbjct: 371 ILSTHLARSYHHLMPLKTFAEV-P---TTEKFRSED-CFSCQSRFPILKNHKNGKLLTSS 425
Query: 371 ---CPKCKKHFCLECDIYIHESLHNCPGCES 398
C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 426 RYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>UNIPROTKB|F6XXE1 [details] [associations]
symbol:GTF2H2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
GeneTree:ENSGT00490000043395 PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 EMBL:AAEX03001498 EMBL:AAEX03001499
Ensembl:ENSCAFT00000012468 Uniprot:F6XXE1
Length = 390
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 161/390 (41%), Positives = 226/390 (57%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKH 127
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 ITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIK 187
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H
Sbjct: 188 TLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSEC 247
Query: 259 XNLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+
Sbjct: 248 -SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECK 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGCQQSLLSSGNKPG 366
ICGL LVS+PHLARSYHHLFP+ PF E+ PL + S CF Q
Sbjct: 307 ICGLTLVSAPHLARSYHHLFPLDPFQEI-PL--EEHNGESDFLFCFSLQ----------- 352
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 353 VYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 381
>UNIPROTKB|F5GZM1 [details] [associations]
symbol:GTF2H2C "General transcription factor IIH subunit
2-like protein" species:9606 "Homo sapiens" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028
PROSITE:PS50234 SMART:SM00327 SMART:SM01047 InterPro:IPR007198
GO:GO:0005634 GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
EMBL:AC147575 PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HGNC:HGNC:31394 EMBL:AC145102 IPI:IPI01015993
ProteinModelPortal:F5GZM1 SMR:F5GZM1 Ensembl:ENST00000508344
ArrayExpress:F5GZM1 Bgee:F5GZM1 Uniprot:F5GZM1
Length = 338
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 143/324 (44%), Positives = 200/324 (61%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM 145
+ D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI +L
Sbjct: 16 DQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLK 75
Query: 146 GKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKES 203
+ C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+ K +
Sbjct: 76 EAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAA 135
Query: 204 KIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXXXNLIK 263
KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H +LI+
Sbjct: 136 KIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSSSEC-SLIR 194
Query: 264 MGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQ 312
MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+ICGL
Sbjct: 195 MGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLT 254
Query: 313 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 372
LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +YV C
Sbjct: 255 LVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGERF-CYGCQGELKDQH----VYV-CA 304
Query: 373 KCKKHFCLECDIYIHESLHNCPGC 396
C+ FC++CD+++H+SLH CPGC
Sbjct: 305 VCQNVFCVDCDVFVHDSLHCCPGC 328
>UNIPROTKB|J3KQC7 [details] [associations]
symbol:GTF2H2 "General transcription factor IIH subunit 2"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR002035 InterPro:IPR004595 InterPro:IPR007087
InterPro:IPR012170 Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028
PROSITE:PS50234 SMART:SM00327 SMART:SM01047 InterPro:IPR007198
GO:GO:0005634 GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
EMBL:AC044797 PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HGNC:HGNC:4656 ProteinModelPortal:J3KQC7 Ensembl:ENST00000425596
Uniprot:J3KQC7
Length = 338
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 143/324 (44%), Positives = 200/324 (61%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM 145
+ D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI +L
Sbjct: 16 DQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLK 75
Query: 146 GKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKES 203
+ C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+ K +
Sbjct: 76 KAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAA 135
Query: 204 KIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXXXNLIK 263
KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H +LI+
Sbjct: 136 KIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSEC-SLIR 194
Query: 264 MGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQ 312
MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+ICGL
Sbjct: 195 MGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKICGLT 254
Query: 313 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 372
LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +YV C
Sbjct: 255 LVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGERF-CYGCQGELKDQH----VYV-CA 304
Query: 373 KCKKHFCLECDIYIHESLHNCPGC 396
C+ FC++CD+++H+SLH CPGC
Sbjct: 305 VCQNVFCVDCDVFVHDSLHCCPGC 328
>UNIPROTKB|E1C9E6 [details] [associations]
symbol:LOC100858972 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000439 "core TFIIH complex" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 GO:GO:0005634 GO:GO:0006355
GO:GO:0008270 GO:GO:0006281 GeneTree:ENSGT00490000043395
OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
EMBL:AADN02070647 EMBL:AADN02070646 IPI:IPI00573333
Ensembl:ENSGALT00000003778 Uniprot:E1C9E6
Length = 397
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 147/351 (41%), Positives = 207/351 (58%)
Query: 61 YHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLV 120
+H Q R + R L + + D +P+R+ K +E FV E+FDQNP+SQ+GL+
Sbjct: 49 HHGQVRLGMM-RHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQMGLI 107
Query: 121 TVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREV 178
K A +T+L G+P+ HI AL + C G+ SL N+L+L L +P + REV
Sbjct: 108 VTKSKRAEKMTELSGNPKKHIAALKKAVDMNCQGEPSLYNSLNLAMQTLKHMPGHTSREV 167
Query: 179 LILYSALSTCDPGDIMETIQ-KC-KESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDE 236
LI++S+L+TCDP +I + I+ KC K KIR SVIGLSAE+ +C L ++TGG+Y V LDE
Sbjct: 168 LIVFSSLTTCDPANIYDLIKMKCLKAVKIRVSVIGLSAEVRVCTVLTRETGGTYHVILDE 227
Query: 237 SHFKELIMEHXXXXXXXXXXXXXNLIKMGFPQRA--------GEGSISICSCHKEVKVGV 288
+H+KEL+M H +LI+MGFPQ + S S+ + +
Sbjct: 228 THYKELLMHHVSPPPASSTSEC-SLIRMGFPQHTTASLSDQDAKPSFSMAQLENNSEPCL 286
Query: 289 ---GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRN 345
GY CP+C+A+ ELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL
Sbjct: 287 TLDGYFCPQCRAKYSELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEY 341
Query: 346 RSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+ C GCQ + +Y+ C CK FC+ECD+++H+SLH CPGC
Sbjct: 342 QGERYCQGCQAEIKDQN----VYI-CKTCKNAFCVECDVFVHDSLHCCPGC 387
Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
Identities = 107/252 (42%), Positives = 151/252 (59%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ ID+ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIDDILFKAKRKRIYEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQ+GL+ K A +T+L G+P+ H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQMGLIVTKSKRAEKMTELSGNPKKH 127
Query: 141 IKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I AL + C G+ SL N+L+L L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 IAALKKAVDMNCQGEPSLYNSLNLAMQTLKHMPGHTSREVLIVFSSLTTCDPANIYDLIK 187
Query: 199 -KC-KESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXX 256
KC K KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+M H
Sbjct: 188 MKCLKAVKIRVSVIGLSAEVRVCTVLTRETGGTYHVILDETHYKELLMHHVSPPPASSTS 247
Query: 257 XXXNLIKMGFPQ 268
+LI+MGFPQ
Sbjct: 248 EC-SLIRMGFPQ 258
>UNIPROTKB|E2R5I8 [details] [associations]
symbol:GTF2H2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0008270 GO:GO:0006281
GeneTree:ENSGT00490000043395 PANTHER:PTHR12695 Pfam:PF04056
TIGRFAMs:TIGR00622 EMBL:AAEX03001498 EMBL:AAEX03001499
Ensembl:ENSCAFT00000036248 Uniprot:E2R5I8
Length = 335
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 142/324 (43%), Positives = 198/324 (61%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM 145
+ D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI +L
Sbjct: 16 DQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLK 75
Query: 146 GKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKES 203
+ C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+ K +
Sbjct: 76 KAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAA 135
Query: 204 KIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXXXNLIK 263
KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H +LI+
Sbjct: 136 KIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSEC-SLIR 194
Query: 264 MGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQ 312
MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+ICGL
Sbjct: 195 MGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKICGLT 254
Query: 313 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 372
LVS+PHLARSYHHLFP+ PF E+ PL + N R F LL +YV C
Sbjct: 255 LVSAPHLARSYHHLFPLDPFQEI-PL---EEHNGERYMSFDFY--LLH------VYV-CA 301
Query: 373 KCKKHFCLECDIYIHESLHNCPGC 396
C+ FC++CD+++H+SLH CPGC
Sbjct: 302 VCQNVFCVDCDVFVHDSLHCCPGC 325
>FB|FBgn0037202 [details] [associations]
symbol:Ssl1 "Ssl1" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS;IDA] [GO:0001111 "promoter clearance from RNA
polymerase II promoter" evidence=ISS] [GO:0000439 "core TFIIH
complex" evidence=ISS] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS] [GO:0001113
"transcriptional open complex formation at RNA polymerase II
promoter" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 EMBL:AE014296 GO:GO:0006355
GO:GO:0008270 GO:GO:0006281 GO:GO:0006367 GO:GO:0005675
GO:GO:0000439 eggNOG:COG5151 GeneTree:ENSGT00490000043395 KO:K03142
OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
HSSP:Q13888 EMBL:AY047574 RefSeq:NP_649427.1 UniGene:Dm.6850
SMR:Q9VNP8 IntAct:Q9VNP8 MINT:MINT-961218 STRING:Q9VNP8
EnsemblMetazoa:FBtr0078554 EnsemblMetazoa:FBtr0332051 GeneID:40509
KEGG:dme:Dmel_CG11115 UCSC:CG11115-RA CTD:40509 FlyBase:FBgn0037202
InParanoid:Q9VNP8 OrthoDB:EOG49P8F1 GenomeRNAi:40509 NextBio:819116
Uniprot:Q9VNP8
Length = 438
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 149/397 (37%), Positives = 228/397 (57%)
Query: 31 WERSYADDRSWEALQEDESGFL----RPIDNSAFYHAQYRRRLRDR-SLVATTARIQKAA 85
WE Y +++WEA+++DE G L I A Q ++ ++R ++ + +
Sbjct: 14 WETGY--EKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQKSKQNRLGMMRHMFVVLDCS 71
Query: 86 EM----DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
E D +P+R+ K +E F+ EFFDQNP+SQ+GL+ +K A +T+L G+ H+
Sbjct: 72 ESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIALKAKRAEKVTELTGTSRVHL 131
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
KAL + + + + SLQN LDL L +PS+ RE++I+ +L+TCDP DI TI +
Sbjct: 132 KALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINLTIDE 191
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXXX 259
K+ IRCSVI LSAE+ + ++L Q T G++ LD++HF++ +M
Sbjct: 192 LKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPAAKTQHN- 250
Query: 260 NLIKMGFPQRAGE--GS---ISICSCHKE------VKVGVGYTCPRCKARVCELPTDCRI 308
+LI+MGFP E G +S+C CH E G+ CP+C ++ CELP +C+
Sbjct: 251 SLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSKYCELPVECQS 310
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVT----PLCLNDPRNRSRSTCFGCQQSLLSSGNK 364
CGL LVS+PHLARSYHHLFP+ F+E+ P +D + R C+GC ++L +K
Sbjct: 311 CGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLTSDVRE-CYGCAKALGQGVDK 369
Query: 365 PGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCESL 399
V C CK+ FC++CDI+IH++LH C GC ++
Sbjct: 370 VADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNTI 406
>ASPGD|ASPL0000017788 [details] [associations]
symbol:AN4283 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR007087 InterPro:IPR012170
InterPro:IPR015880 Pfam:PF07975 PIRSF:PIRSF015919 PROSITE:PS00028
PROSITE:PS50234 SMART:SM00327 SMART:SM00355 SMART:SM01047
InterPro:IPR007198 GO:GO:0005634 GO:GO:0006355 GO:GO:0008270
GO:GO:0006281 EMBL:BN001302 HOGENOM:HOG000159415 OMA:ECKVCGL
PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
EnsemblFungi:CADANIAT00004371 Uniprot:C8V3Z3
Length = 455
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 148/395 (37%), Positives = 221/395 (55%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD-----RSLVATTARI----QKAAEMDF 89
R+WE L E G + ++ +R L+D R ++ I Q E D
Sbjct: 48 RTWETLVEGADGTISSTVGGLLEASKRKRLLKDTTPLQRGIIRHIILILDLSQSMMEKDL 107
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGK 147
RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ +
Sbjct: 108 RPTRYLLTLRYAQEFVREFFEQNPISQVGVIGLRDGLALRISDMSGNPTEHISAIQDLRS 167
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 207
G SLQN L++ +G L PS+G RE+ I++ +L + DPGDI +TI + KIR
Sbjct: 168 QDPKGLPSLQNGLEMARGALFHTPSHGTREIFIVFGSLLSSDPGDIHQTITTLIDDKIRV 227
Query: 208 SVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHXXX-XXXXXXXXXXNLI 262
++GL+A++ IC+ LC T G Y VAL+E HF+EL++ +L+
Sbjct: 228 GIVGLAAQVAICRELCSRTNGGDDTYYGVALNEQHFRELMLAVTTPPATYSQKQSASSLL 287
Query: 263 KMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS 322
MGFP R E S+C+CH G GY C RC ++VC LP +C CGL L+ S HLARS
Sbjct: 288 MMGFPSRTIESFPSLCACHSNPTPG-GYLCSRCNSKVCGLPAECPSCGLTLILSTHLARS 346
Query: 323 YHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----------QQSLLSSGNKPGLYVA-- 370
YHHLFP+ + EV+ + +RS +TCF C +Q + G+ V+
Sbjct: 347 YHHLFPLMNWVEVSW----ERAHRS-TTCFACGIAFPTIPPKEQWQATQNLAKGMSVSSR 401
Query: 371 --CPKCKKHFCLECDIYIHESLHNCPGCES--LRH 401
C C+ HFC++CD++ HE +HNCPGC+S +RH
Sbjct: 402 YECTVCENHFCIDCDLFAHEVVHNCPGCQSRVVRH 436
>WB|WBGene00011814 [details] [associations]
symbol:T16H12.4 species:6239 "Caenorhabditis elegans"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000433 InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS01357 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 InterPro:IPR007198 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0002119 GO:GO:0006355 GO:GO:0046872
GO:GO:0008270 GO:GO:0006281 GO:GO:0010171 GO:GO:0040011
GO:GO:0006351 EMBL:Z30662 eggNOG:COG5151
GeneTree:ENSGT00490000043395 HOGENOM:HOG000159415 KO:K03142
OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056 TIGRFAMs:TIGR00622
PIR:S42385 RefSeq:NP_499239.1 ProteinModelPortal:P34567 SMR:P34567
IntAct:P34567 MINT:MINT-1042120 STRING:P34567 PaxDb:P34567
EnsemblMetazoa:T16H12.4.1 EnsemblMetazoa:T16H12.4.2 GeneID:176421
KEGG:cel:CELE_T16H12.4 UCSC:T16H12.4.1 CTD:176421 WormBase:T16H12.4
InParanoid:P34567 NextBio:892506 Uniprot:P34567
Length = 376
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 145/385 (37%), Positives = 206/385 (53%)
Query: 31 WERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLR-----DR---------SLV 75
WE YA+ + + L EDE G + + A Y A +R+ R +R +V
Sbjct: 11 WEAGYAEGLNINDVLVEDEGGSIEK--SIAKYVADSKRKARLTKRPERIRLGIMRHVMIV 68
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
+R + M PSR VV K ++ F+ FF+QNP++QIGL+T KD A+ LT + G
Sbjct: 69 IDCSRFMTSKAMP--PSRFVVVMKALQTFLDRFFEQNPIAQIGLITCKDRKADRLTMMTG 126
Query: 136 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+ ++L + + C GD SLQNAL L L +P + REV+++ SALST DPG+I
Sbjct: 127 NIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPGHVSREVVLVISALSTIDPGNI 186
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXX 253
TI+ K IRCS IGLSAEMF+CK + + T G YSVALD H + L +H
Sbjct: 187 YSTIETMKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDHLQLLFSKHTLPPSSA 246
Query: 254 XXXXXXNLIKMGFPQRAGEGSISICSCHKEVKV--GVGYTCPRCKARVCELPTDCRICGL 311
N I +GFP + S C CH + K G+ C +C AR C +P +C +C L
Sbjct: 247 KSSEC-NAIHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCGARHCSIPAECPVCKL 305
Query: 312 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 371
LV++P LAR++ HL P++ F+++ +R C+ C+ L G + C
Sbjct: 306 TLVAAPQLARAFRHLQPLSAFEQIEV---------TRGFCYACETRLSGEGFR------C 350
Query: 372 PKCKKHFCLECDIYIHESLHNCPGC 396
C+ FCL+CD +HESLH CPGC
Sbjct: 351 GSCQLVFCLDCDTLLHESLHVCPGC 375
>CGD|CAL0004620 [details] [associations]
symbol:orf19.1457 species:5476 "Candida albicans" [GO:0005675
"holo TFIIH complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
[GO:0000112 "nucleotide-excision repair factor 3 complex"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0070816 "phosphorylation of RNA polymerase II C-terminal
domain" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR002035 InterPro:IPR004595
InterPro:IPR007087 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS00028 PROSITE:PS50234 SMART:SM00327
SMART:SM01047 CGD:CAL0004620 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0008270 GO:GO:0006281 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG5151 KO:K03142 PANTHER:PTHR12695
Pfam:PF04056 TIGRFAMs:TIGR00622 RefSeq:XP_722368.1
RefSeq:XP_722507.1 ProteinModelPortal:Q5ALX0 STRING:Q5ALX0
GeneID:3635800 GeneID:3635972 KEGG:cal:CaO19.1457
KEGG:cal:CaO19.9032 Uniprot:Q5ALX0
Length = 507
Score = 304 (112.1 bits), Expect = 5.4e-56, Sum P(2) = 5.4e-56
Identities = 56/121 (46%), Positives = 73/121 (60%)
Query: 288 VGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRS 347
+GY CP+CK +VC LPT C +CGL L+ S HLARSYHHL P+AP+ EV + D
Sbjct: 391 IGYQCPQCKCKVCNLPTICPVCGLMLILSTHLARSYHHLVPLAPYKEVKVSPIYDS---- 446
Query: 348 RSTCFGCQQSL---LSSGNKPGLYVA-------CPKCKKHFCLECDIYIHESLHNCPGCE 397
+ CFGCQ + G G + C KC + FC+ CD+++HE LHNCPGCE
Sbjct: 447 -TYCFGCQLKFPEGVKLGTHKGTLESMTSSRYRCLKCSQDFCINCDVFVHEVLHNCPGCE 505
Query: 398 S 398
+
Sbjct: 506 N 506
Score = 299 (110.3 bits), Expect = 5.4e-56, Sum P(2) = 5.4e-56
Identities = 74/222 (33%), Positives = 127/222 (57%)
Query: 30 AWERSYADDRSWEALQEDESG--FLRPIDNSAFYHAQYRRRLRD------RSLVATTARI 81
AWE Y RSW+ +++DE G + S + + ++ +++ R ++ T I
Sbjct: 58 AWEDEY--QRSWDIVKDDEQGGNSFEAMVQSIIENRK-KKIMKNPSTPFQRGIIRTLIII 114
Query: 82 ----QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
+E D RP+R+++ ++ FV EFFDQNP+S++G++ +++GVAN ++++ GSP
Sbjct: 115 IDGSSAMSEKDLRPTRLSMTLNYLQEFVVEFFDQNPISRLGIILMRNGVANLVSEVSGSP 174
Query: 138 ESHI------KALM-GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLILYSA 184
+ H+ KA + GD SLQN+L++ + LL + S +E+L+++ A
Sbjct: 175 QYHVDKIRNLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEILVIFGA 234
Query: 185 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT 226
L T DPGDI +TI + +I+ SVIGLSA++ IC+ L T
Sbjct: 235 LFTSDPGDIHKTIDSLVKDEIKASVIGLSAQVAICQELVNRT 276
Score = 190 (71.9 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 45/108 (41%), Positives = 65/108 (60%)
Query: 152 GDSSLQNALDLVQGLL------SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 205
GD SLQN+L++ + LL + S +E+L+++ AL T DPGDI +TI + +I
Sbjct: 196 GDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEILVIFGALFTSDPGDIHKTIDSLVKDEI 255
Query: 206 RCSVIGLSAEMFICKHLCQDTGGS--------YSVALDESHFKELIME 245
+ SVIGLSA++ IC+ L T Y V ++ESHFKEL+ME
Sbjct: 256 KASVIGLSAQVAICQELVNRTNNEPRNSQSKHYGVIMNESHFKELLME 303
>GENEDB_PFALCIPARUM|MAL13P1.76 [details] [associations]
symbol:MAL13P1.76 "TFIIH basal transcription
factor subunit" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR001841 InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50089 PROSITE:PS50234 SMART:SM00184
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
EMBL:AL844509 KO:K03142 OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056
RefSeq:XP_001349885.1 ProteinModelPortal:Q8IEG6
EnsemblProtists:MAL13P1.76:mRNA GeneID:813966 KEGG:pfa:MAL13P1.76
EuPathDB:PlasmoDB:PF3D7_1314900 HOGENOM:HOG000280848
ProtClustDB:CLSZ2432327 Uniprot:Q8IEG6
Length = 401
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 110/378 (29%), Positives = 186/378 (49%)
Query: 31 WERSYADDRSWEALQEDESGFLRPI---DNSAFYHAQYRRR----LRD---RSLVATTAR 80
WE+ +RSW L E+ +G L+ + +N +YR+ LR R ++
Sbjct: 36 WEQDV--ERSWNLLVEN-NGVLQHVSQENNENENKEKYRKNQGSSLRKGIFRHIIILFDM 92
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
E D +P R+ V + VE+F++ FF +NP+ +G+V +K+ A + + +
Sbjct: 93 SSSMKERDLKPDRINVALECVESFLKNFFFKNPVGHVGVVALKNSSAKLIQPFTSNVDDI 152
Query: 141 IKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+ +++ + G G SL+ L + LL +P YG +EVLI+Y ++ TCD +I+ ++
Sbjct: 153 LNSILKERTAGLQGSPSLEEGLQIAHDLLIDMPLYGTKEVLIMYGSIRTCDKKNILNVLE 212
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
+S I + I ++ EM I KH+C+ + G Y + ++ I +
Sbjct: 213 LLVKSNIYVNCISIAPEMHILKHICEKSNGFYKICSSKNSLMNEI-NNNAETPLWMQGME 271
Query: 259 XNLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPH 318
LI + FP + + +CSCH ++ Y C C + C++P+ C++CG+ L+S
Sbjct: 272 PQLIHICFPTKKKISTQIMCSCHGKLNTDT-YVCNFCNSYTCKIPSKCKVCGIHLISMHD 330
Query: 319 LARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHF 378
L+ ++L F E+ N+ N C C Q L NK +Y C KC+ F
Sbjct: 331 LSHITNNLQGSPLFIEIK----NEQGNYK--VCSSCNQQLY---NK--IY-QCTKCQHIF 378
Query: 379 CLECDIYIHESLHNCPGC 396
CLECDI+IHE L+ CP C
Sbjct: 379 CLECDIFIHEELNQCPFC 396
>UNIPROTKB|Q8IEG6 [details] [associations]
symbol:Ssl-like protein "TFIIH basal transcription factor
subunit" species:36329 "Plasmodium falciparum 3D7" [GO:0020011
"apicoplast" evidence=RCA] InterPro:IPR001841 InterPro:IPR002035
InterPro:IPR004595 InterPro:IPR012170 Pfam:PF07975
PIRSF:PIRSF015919 PROSITE:PS50089 PROSITE:PS50234 SMART:SM00184
SMART:SM00327 SMART:SM01047 InterPro:IPR007198 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
EMBL:AL844509 KO:K03142 OMA:ECKVCGL PANTHER:PTHR12695 Pfam:PF04056
RefSeq:XP_001349885.1 ProteinModelPortal:Q8IEG6
EnsemblProtists:MAL13P1.76:mRNA GeneID:813966 KEGG:pfa:MAL13P1.76
EuPathDB:PlasmoDB:PF3D7_1314900 HOGENOM:HOG000280848
ProtClustDB:CLSZ2432327 Uniprot:Q8IEG6
Length = 401
Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
Identities = 110/378 (29%), Positives = 186/378 (49%)
Query: 31 WERSYADDRSWEALQEDESGFLRPI---DNSAFYHAQYRRR----LRD---RSLVATTAR 80
WE+ +RSW L E+ +G L+ + +N +YR+ LR R ++
Sbjct: 36 WEQDV--ERSWNLLVEN-NGVLQHVSQENNENENKEKYRKNQGSSLRKGIFRHIIILFDM 92
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
E D +P R+ V + VE+F++ FF +NP+ +G+V +K+ A + + +
Sbjct: 93 SSSMKERDLKPDRINVALECVESFLKNFFFKNPVGHVGVVALKNSSAKLIQPFTSNVDDI 152
Query: 141 IKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+ +++ + G G SL+ L + LL +P YG +EVLI+Y ++ TCD +I+ ++
Sbjct: 153 LNSILKERTAGLQGSPSLEEGLQIAHDLLIDMPLYGTKEVLIMYGSIRTCDKKNILNVLE 212
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
+S I + I ++ EM I KH+C+ + G Y + ++ I +
Sbjct: 213 LLVKSNIYVNCISIAPEMHILKHICEKSNGFYKICSSKNSLMNEI-NNNAETPLWMQGME 271
Query: 259 XNLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPH 318
LI + FP + + +CSCH ++ Y C C + C++P+ C++CG+ L+S
Sbjct: 272 PQLIHICFPTKKKISTQIMCSCHGKLNTDT-YVCNFCNSYTCKIPSKCKVCGIHLISMHD 330
Query: 319 LARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHF 378
L+ ++L F E+ N+ N C C Q L NK +Y C KC+ F
Sbjct: 331 LSHITNNLQGSPLFIEIK----NEQGNYK--VCSSCNQQLY---NK--IY-QCTKCQHIF 378
Query: 379 CLECDIYIHESLHNCPGC 396
CLECDI+IHE L+ CP C
Sbjct: 379 CLECDIFIHEELNQCPFC 396
>UNIPROTKB|D6RID8 [details] [associations]
symbol:GTF2H2C "General transcription factor IIH subunit
2-like protein" species:9606 "Homo sapiens" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR002035 InterPro:IPR012170 SMART:SM00327
InterPro:IPR007198 EMBL:AC147575 HOGENOM:HOG000159415
PANTHER:PTHR12695 Pfam:PF04056 HGNC:HGNC:31394 EMBL:AC145102
IPI:IPI00964847 ProteinModelPortal:D6RID8 Ensembl:ENST00000507595
ArrayExpress:D6RID8 Bgee:D6RID8 Uniprot:D6RID8
Length = 253
Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
Identities = 92/250 (36%), Positives = 133/250 (53%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K IG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLK-----------------IGIIVTKSKRAEKLTELSGNPRKH 110
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 111 ITSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIK 170
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHXXXXXXXXXXXX 258
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H
Sbjct: 171 TLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSSSEC 230
Query: 259 XNLIKMGFPQ 268
+LI+MGFPQ
Sbjct: 231 -SLIRMGFPQ 239
>UNIPROTKB|D6RJD3 [details] [associations]
symbol:GTF2H2C "General transcription factor IIH subunit
2-like protein" species:9606 "Homo sapiens" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR012170 InterPro:IPR007198 EMBL:AC147575
PANTHER:PTHR12695 Pfam:PF04056 HGNC:HGNC:31394 HGNC:HGNC:35418
OrthoDB:EOG4M0F1X EMBL:AC138827 EMBL:AC145102 HOGENOM:HOG000147843
IPI:IPI00973412 Ensembl:ENST00000512736 Ensembl:ENST00000570722
UCSC:uc003jww.1 Uniprot:D6RJD3
Length = 165
Score = 221 (82.9 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 54/152 (35%), Positives = 80/152 (52%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKH 127
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLSQI 170
I +L + C G+ SL N+L + L +
Sbjct: 128 ITSLKEAVDMTCHGEPSLYNSLSMAMQTLKLV 159
>UNIPROTKB|D4A6E9 [details] [associations]
symbol:Gtf2h2 "General transcription factor IIH subunit 2"
species:10116 "Rattus norvegicus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] InterPro:IPR012170 InterPro:IPR007198 RGD:1310499
PANTHER:PTHR12695 Pfam:PF04056 IPI:IPI00205328
Ensembl:ENSRNOT00000019962 ArrayExpress:D4A6E9 Uniprot:D4A6E9
Length = 201
Score = 221 (82.9 bits), Expect = 6.4e-18, P = 6.4e-18
Identities = 54/150 (36%), Positives = 80/150 (53%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKH 127
Query: 141 IKALMGKLG--CSGDSSLQNALDLVQGLLS 168
I +L + C G+ SL N+L + L+
Sbjct: 128 ITSLKKAVDMTCHGEPSLYNSLSMAMQTLN 157
>UNIPROTKB|D6RGC9 [details] [associations]
symbol:GTF2H2C "General transcription factor IIH subunit 2"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR012170 InterPro:IPR007198 EMBL:AC044797
EMBL:AC147575 PANTHER:PTHR12695 Pfam:PF04056 HGNC:HGNC:31394
HGNC:HGNC:4656 EMBL:AC142525 EMBL:AC145102 IPI:IPI00964302
SMR:D6RGC9 Ensembl:ENST00000514162 Ensembl:ENST00000517900
Ensembl:ENST00000576299 HOGENOM:HOG000147843 Uniprot:D6RGC9
Length = 123
Score = 175 (66.7 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 43/115 (37%), Positives = 62/115 (53%)
Query: 31 WERSYADDRSWEALQEDESGFLRP-IDNSAF---------YHAQYRRRLRDRSLVATTAR 80
WE Y +R+WE L+EDESG L+ I++ F +H Q R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMM-RHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 122
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 410 376 0.00088 117 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 613 (65 KB)
Total size of DFA: 268 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.06u 0.10s 30.16t Elapsed: 00:00:01
Total cpu time: 30.07u 0.10s 30.17t Elapsed: 00:00:01
Start: Fri May 10 14:18:11 2013 End: Fri May 10 14:18:12 2013