BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015267
(410 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297746227|emb|CBI16283.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/401 (79%), Positives = 346/401 (86%), Gaps = 16/401 (3%)
Query: 25 NG-GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK 83
NG GL+AWER+YAD+RSWE+LQEDESG LRPIDN YHAQYRRR+R TTARIQK
Sbjct: 93 NGRGLDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQK 152
Query: 84 ---------------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 128
A+EMDF+PSRMAVVAK +EAF+REFFDQNPLSQIGLVT+KDG+A
Sbjct: 153 GLIRYLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQ 212
Query: 129 CLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
CLTDLGGSP+SH+KALMGKL CSGDSSLQNALDLV G L+QIPSYGHREVLILYSALSTC
Sbjct: 213 CLTDLGGSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTC 272
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DPGDIMETIQ+CK+SKIRCSVIGLSAE+FIC+HLCQ+TGGSYSVALDESHFKEL++EHAP
Sbjct: 273 DPGDIMETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAP 332
Query: 249 PPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 308
PPPAIAEFAIANLIKMGFPQRA EG ISICSCHKE KVG GYTCPRCKARVCELPT+CRI
Sbjct: 333 PPPAIAEFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRI 392
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVSSPHLARSYHHLFPI PFDEV+ LN+P RS CFGCQ+SLL GNKP L
Sbjct: 393 CGLTLVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLC 452
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 409
VACPKCK+HFCL+CDIYIHESLHNCPGCES RHS + E
Sbjct: 453 VACPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTE 493
>gi|225435253|ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
vinifera]
Length = 433
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/401 (79%), Positives = 346/401 (86%), Gaps = 16/401 (3%)
Query: 25 NG-GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK 83
NG GL+AWER+YAD+RSWE+LQEDESG LRPIDN YHAQYRRR+R TTARIQK
Sbjct: 32 NGRGLDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQK 91
Query: 84 ---------------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 128
A+EMDF+PSRMAVVAK +EAF+REFFDQNPLSQIGLVT+KDG+A
Sbjct: 92 GLIRYLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQ 151
Query: 129 CLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
CLTDLGGSP+SH+KALMGKL CSGDSSLQNALDLV G L+QIPSYGHREVLILYSALSTC
Sbjct: 152 CLTDLGGSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTC 211
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DPGDIMETIQ+CK+SKIRCSVIGLSAE+FIC+HLCQ+TGGSYSVALDESHFKEL++EHAP
Sbjct: 212 DPGDIMETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAP 271
Query: 249 PPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 308
PPPAIAEFAIANLIKMGFPQRA EG ISICSCHKE KVG GYTCPRCKARVCELPT+CRI
Sbjct: 272 PPPAIAEFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRI 331
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVSSPHLARSYHHLFPI PFDEV+ LN+P RS CFGCQ+SLL GNKP L
Sbjct: 332 CGLTLVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLC 391
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 409
VACPKCK+HFCL+CDIYIHESLHNCPGCES RHS + E
Sbjct: 392 VACPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKIVSVTE 432
>gi|449451946|ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
sativus]
Length = 423
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/426 (74%), Positives = 360/426 (84%), Gaps = 20/426 (4%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
M N E +RLNGEA+EE++D+D N GL AWER+YADDRSWEALQEDESG LRPIDN A
Sbjct: 1 MNNGENRRLNGEADEEDDDDDAN---GLAAWERTYADDRSWEALQEDESGLLRPIDNKAI 57
Query: 61 YHAQYRRRLRDRSLVATTARIQK---------------AAEMDFRPSRMAVVAKQVEAFV 105
YHAQYRRRLR S +ATTARIQK A EMDFRPSRMAVVAK V+AFV
Sbjct: 58 YHAQYRRRLRTLSSLATTARIQKGLIRYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFV 117
Query: 106 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQG 165
REFFDQNPLSQIGLVT+KDG ANCLTDLGGSPESH+KALMGKL CSGD+SLQN L+LV
Sbjct: 118 REFFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKALMGKLECSGDASLQNGLELVHS 177
Query: 166 LLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQD 225
L+QIPSYGHREVL+LYSAL++CDPGDIMET+QKCK SKIRCSVIGL+AE+FIC+HLCQ+
Sbjct: 178 YLNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQE 237
Query: 226 TGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK 285
TGGSYSVALDESHFKEL++EHAPPPPAIA+ A+ NLIKMGFPQRA E SI+ICSCHKE K
Sbjct: 238 TGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIKMGFPQRAAESSIAICSCHKEAK 297
Query: 286 VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRN 345
VG GYTCPRCKARVCELPT+CRICGL L+SSPHLARSYHHLFPI PFDEV+ +DPR+
Sbjct: 298 VGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRH 357
Query: 346 RSRSTCFGCQQSLL--SSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSN 403
+ CFGCQ+SL+ S+GN P + V+CPKCK+HFCL+CDIYIHESLHNCPGCES R
Sbjct: 358 QLPKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK 417
Query: 404 PIVANE 409
++E
Sbjct: 418 LATSDE 423
>gi|224119296|ref|XP_002331276.1| predicted protein [Populus trichocarpa]
gi|222873701|gb|EEF10832.1| predicted protein [Populus trichocarpa]
Length = 412
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 308/388 (79%), Positives = 335/388 (86%), Gaps = 16/388 (4%)
Query: 31 W-ERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK------ 83
W ER+Y+D+RSWEALQEDESG LRP+DN A YHAQYRRRLR S + + RIQK
Sbjct: 25 WGERNYSDERSWEALQEDESGLLRPLDNKAMYHAQYRRRLRSLSTASNSQRIQKGLIRFL 84
Query: 84 ---------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
A+ MDFRPSRMAVVA+ VEAF+REFFDQNPLSQI LVT+KDGVA LT+LG
Sbjct: 85 YIVLDLSRAASVMDFRPSRMAVVAQNVEAFIREFFDQNPLSQIALVTIKDGVAYSLTELG 144
Query: 135 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
GSPESHIKALM KL CSGDSSLQNAL+LV L +IPSYG+REVLILYSAL+TCDPGDIM
Sbjct: 145 GSPESHIKALMAKLECSGDSSLQNALELVHEYLDKIPSYGNREVLILYSALTTCDPGDIM 204
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA 254
ETIQKCK+SK+RCSVIGLSAEMFICKHLCQ+TGG YSVALDESHFKELI+EHAPPPPAIA
Sbjct: 205 ETIQKCKKSKMRCSVIGLSAEMFICKHLCQETGGLYSVALDESHFKELILEHAPPPPAIA 264
Query: 255 EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 314
EFAIANLIKMGFPQRA EGSISICSCHKE KVG GY CPRCKARVCELPT+CRICGL LV
Sbjct: 265 EFAIANLIKMGFPQRAAEGSISICSCHKESKVGEGYICPRCKARVCELPTECRICGLTLV 324
Query: 315 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKC 374
SSPHLARSYHHLFPIAPFDEV P N+P RS+ TCFGCQQSL++ GNKP L VACPKC
Sbjct: 325 SSPHLARSYHHLFPIAPFDEVKPSRQNEPHRRSQKTCFGCQQSLVNPGNKPSLQVACPKC 384
Query: 375 KKHFCLECDIYIHESLHNCPGCESLRHS 402
K++FCL+CDIYIHESLHNCPGCESLR S
Sbjct: 385 KQYFCLDCDIYIHESLHNCPGCESLRAS 412
>gi|357509341|ref|XP_003624959.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355499974|gb|AES81177.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 426
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 311/425 (73%), Positives = 355/425 (83%), Gaps = 21/425 (4%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
M N K LNG+ E+++EDE ++ GLEAWER+Y +DRSWE+LQEDESG LRPID +A
Sbjct: 1 MNNIAGKPLNGDLEDDDEDEANDD--GLEAWERAYTEDRSWESLQEDESGLLRPIDTTAI 58
Query: 61 YHAQYRRRLRDRSLVATTARIQK---------------AAEMDFRPSRMAVVAKQVEAFV 105
+HAQYRRRLR + A TARIQK A+E DFRPSRMAV+AKQVE F+
Sbjct: 59 HHAQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFI 118
Query: 106 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQG 165
REFFDQNPLS +GLVT KDGVANCLTDLGGSPESHIKALMGKL CSGD+SLQNAL+LV
Sbjct: 119 REFFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHS 178
Query: 166 LLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQD 225
L+QIPSYGHREVLILYSALSTCDPGD+METIQKCK+SKIRCSVIGL+AEMFICKHLCQ+
Sbjct: 179 NLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQE 238
Query: 226 TGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK 285
TGG+YSVALDESHFKELI+EH+PPPPAIAE+A ANLIKMGFPQRA EGS++IC+CH+E K
Sbjct: 239 TGGTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAK 298
Query: 286 VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRN 345
G GYTCPRCK RVCELPT+CR+CGL L+SSPHLARSYHHLFPI PF E++P NDP +
Sbjct: 299 TGGGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVPFAEISPSSQNDPNH 358
Query: 346 RSRSTCFGCQQSLLS----SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRH 401
+TCFGCQQSLLS +GNK L V+CPKCK+ FCL+CD+YIHESLHNCPGCES RH
Sbjct: 359 SFPNTCFGCQQSLLSQGFGAGNKAELSVSCPKCKQQFCLDCDMYIHESLHNCPGCESFRH 418
Query: 402 SNPIV 406
S +
Sbjct: 419 SKSVT 423
>gi|356571915|ref|XP_003554116.1| PREDICTED: general transcription factor IIH subunit 2-like [Glycine
max]
Length = 420
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 303/397 (76%), Positives = 343/397 (86%), Gaps = 15/397 (3%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK---- 83
LEAWER+YA+DRSWEALQEDESG LRPID +A YHAQYRRRLR + A TARIQK
Sbjct: 24 LEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIR 83
Query: 84 -----------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 132
A+E DFRPSRMAV+ KQVEAF+REFFDQNPLS +GLVT+KDG+A+C+T+
Sbjct: 84 YLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITE 143
Query: 133 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
LGGSPESHIKALMGKL CSGD+SLQNAL+LV G L+QIPSYGHREVLILYSALSTCDPGD
Sbjct: 144 LGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGD 203
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
+METIQKCK+SKIRCSVIGL+AEMF+CKHLCQ+TGG+YSVALDESHFKELI+EHAPPPPA
Sbjct: 204 LMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPA 263
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 312
IAE+A ANLIKMGFPQR+ EGS++IC+CH+E K G GYTCPRCK RVCELPT+CR+CGL
Sbjct: 264 IAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLT 323
Query: 313 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 372
L+SSPHLARSYHHLFPI FDEVTP ND + +TCFGCQQSLLS GNKPGL V CP
Sbjct: 324 LISSPHLARSYHHLFPIVMFDEVTPSSQNDSNHSFPNTCFGCQQSLLSQGNKPGLSVICP 383
Query: 373 KCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 409
KCK+ FCL+CDIY+HESLHNCPGCES RHS + A++
Sbjct: 384 KCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ 420
>gi|297848764|ref|XP_002892263.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. lyrata]
gi|297338105|gb|EFH68522.1| ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. lyrata]
Length = 421
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/389 (76%), Positives = 329/389 (84%), Gaps = 16/389 (4%)
Query: 27 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK--- 83
G+ WER+Y DDRSWE LQEDESG LRPIDNSA YHAQYRRRLR S A RIQK
Sbjct: 22 GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLI 81
Query: 84 ------------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 131
AAEMDFRPSRMA++AK VEAF+REFFDQNPLSQIGLV++K+GVA+ LT
Sbjct: 82 RYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLT 141
Query: 132 DLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 191
DLGGSPE+HIKALMGKL GDSSLQNAL+LV L+Q+PSYGHREVLILYSAL TCDPG
Sbjct: 142 DLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPG 201
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 251
DIMETIQKCK+SK+RCSVIGLSAEMFICKHLCQ+TGG YSVA+DE H K+L++EHAPPPP
Sbjct: 202 DIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPP 261
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGL 311
AIAEFAIANLIKMGFPQRA EGS++ICSCHKEVK+G GY CPRCKARVC+LPT+C ICGL
Sbjct: 262 AIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGL 321
Query: 312 QLVSSPHLARSYHHLFPIAPFDEVTPL-CLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA 370
LVSSPHLARSYHHLFPIAPFDEV L LND R + +CFGCQQSL+ +GNKPG V
Sbjct: 322 TLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPGPCVT 381
Query: 371 CPKCKKHFCLECDIYIHESLHNCPGCESL 399
C KCK +FCL+CDIYIHESLHNCPGCES+
Sbjct: 382 CRKCKHYFCLDCDIYIHESLHNCPGCESI 410
>gi|356538258|ref|XP_003537621.1| PREDICTED: general transcription factor IIH subunit 2-like [Glycine
max]
Length = 419
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 299/398 (75%), Positives = 341/398 (85%), Gaps = 22/398 (5%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK------ 83
AWER+YA+DRSWEALQEDESG LRPID +A YHAQYRRRLR + A TARIQK
Sbjct: 26 AWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIRYL 85
Query: 84 ---------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
A+E DFRPSRM V+ KQVEAF+REFFDQNPLS +GLVT+KDG+A+C+T+LG
Sbjct: 86 YIVVDLSKAASERDFRPSRMVVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITELG 145
Query: 135 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
GSPESHIKALMGKL CSGD+SLQNAL+LV G L+QIPSYGHREVLILYSALSTCDPGD+M
Sbjct: 146 GSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLM 205
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA 254
ETIQKCK+SKIRCSVIGL+AEMF+CKHLC++TGG+YSVALDESHFKELI+EHAPPPPAIA
Sbjct: 206 ETIQKCKKSKIRCSVIGLAAEMFVCKHLCEETGGTYSVALDESHFKELILEHAPPPPAIA 265
Query: 255 EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 314
E++ ANLIKMGFPQR+ EGS++IC+CH+E K G GYTCPRCK RVCELPT+CR+CGL L+
Sbjct: 266 EYSTANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLTLI 325
Query: 315 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS---TCFGCQQSLLSSGNKPGLYVAC 371
SSPHLARSYHHLFPI FDEVTP ++ SRS TCFGCQQSLLS GNKPGL V C
Sbjct: 326 SSPHLARSYHHLFPIVMFDEVTP----SQKDSSRSFPNTCFGCQQSLLSQGNKPGLSVIC 381
Query: 372 PKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 409
PKCK+ FCL+CDIY+HESLHNCPGCES RHS + A++
Sbjct: 382 PKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVTASQ 419
>gi|30679101|ref|NP_683275.2| transcription initiation factor TFIIH subunit H2 [Arabidopsis
thaliana]
gi|22087278|gb|AAM90909.1|AF499443_1 p44/SSL1-like protein [Arabidopsis thaliana]
gi|4056421|gb|AAC97995.1| Similar to gb|Z30094 basic transcripion factor 2, 44 kD subunit
from Homo sapiens. EST gb|W43325 comes from this gene
[Arabidopsis thaliana]
gi|110738828|dbj|BAF01337.1| putative transcription factor [Arabidopsis thaliana]
gi|332189663|gb|AEE27784.1| transcription initiation factor TFIIH subunit H2 [Arabidopsis
thaliana]
Length = 421
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 296/389 (76%), Positives = 328/389 (84%), Gaps = 16/389 (4%)
Query: 27 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK--- 83
G+ WER+Y DDRSWE LQEDESG LRPIDNSA YHAQYRRRLR S A RIQK
Sbjct: 22 GIGEWERAYVDDRSWEELQEDESGLLRPIDNSAIYHAQYRRRLRMLSAAAAGTRIQKGLI 81
Query: 84 ------------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 131
AAEMDFRPSRMA++AK VEAF+REFFDQNPLSQIGLV++K+GVA+ LT
Sbjct: 82 RYLYIVIDFSRAAAEMDFRPSRMAIMAKHVEAFIREFFDQNPLSQIGLVSIKNGVAHTLT 141
Query: 132 DLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 191
DLGGSPE+HIKALMGKL GDSSLQNAL+LV L+Q+PSYGHREVLILYSAL TCDPG
Sbjct: 142 DLGGSPETHIKALMGKLEALGDSSLQNALELVHEHLNQVPSYGHREVLILYSALCTCDPG 201
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 251
DIMETIQKCK+SK+RCSVIGLSAEMFICKHLCQ+TGG YSVA+DE H K+L++EHAPPPP
Sbjct: 202 DIMETIQKCKKSKLRCSVIGLSAEMFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPP 261
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGL 311
AIAEFAIANLIKMGFPQRA EGS++ICSCHKEVK+G GY CPRCKARVC+LPT+C ICGL
Sbjct: 262 AIAEFAIANLIKMGFPQRAAEGSMAICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGL 321
Query: 312 QLVSSPHLARSYHHLFPIAPFDEVTPL-CLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA 370
LVSSPHLARSYHHLFPIAPFDEV L LND R + +CFGCQQSL+ +GNKP V
Sbjct: 322 TLVSSPHLARSYHHLFPIAPFDEVPALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVT 381
Query: 371 CPKCKKHFCLECDIYIHESLHNCPGCESL 399
C KCK +FCL+CDIYIHESLHNCPGCES+
Sbjct: 382 CRKCKHYFCLDCDIYIHESLHNCPGCESI 410
>gi|357164610|ref|XP_003580110.1| PREDICTED: general transcription factor IIH subunit 2-like
[Brachypodium distachyon]
Length = 428
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 279/389 (71%), Positives = 320/389 (82%), Gaps = 21/389 (5%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK---- 83
LEAWER+YADDRSWEALQEDESG LRPID H+QYRRRL RS A RIQK
Sbjct: 41 LEAWERAYADDRSWEALQEDESGLLRPIDTKNLVHSQYRRRLLLRS-AAAAVRIQKGLIR 99
Query: 84 -----------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 132
A+EMD+RPSRMAVVAK EAF+REFFDQNPLS +GLVT+KDG+++ LTD
Sbjct: 100 YLYIVIDLSRAASEMDYRPSRMAVVAKCAEAFIREFFDQNPLSHVGLVTIKDGISHRLTD 159
Query: 133 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
+GGSPES IKALMGKL CSGDSSLQNAL+L+ G L+QIPSYGH+EVLILYSAL+TCDPGD
Sbjct: 160 IGGSPESQIKALMGKLECSGDSSLQNALELIHGYLNQIPSYGHKEVLILYSALNTCDPGD 219
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
+MET++KCK+SKIRCSVIGL+AE+FICKHLC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 220 VMETVEKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 279
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPTDCRICGL 311
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPT+CR CGL
Sbjct: 280 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 339
Query: 312 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 371
LVSSPHLARSYHHLFP+APFDEVT + C+GCQQSL++S ++ L+V C
Sbjct: 340 TLVSSPHLARSYHHLFPVAPFDEVT----FKLGQKGGQNCYGCQQSLINSDSQSNLHVRC 395
Query: 372 PKCKKHFCLECDIYIHESLHNCPGCESLR 400
PKC +HFC +CDIYIHESLHNCPGCES R
Sbjct: 396 PKCNQHFCFDCDIYIHESLHNCPGCESQR 424
>gi|326529607|dbj|BAK04750.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 430
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 276/392 (70%), Positives = 320/392 (81%), Gaps = 21/392 (5%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK---- 83
LEAWER+YADDRSWEAL+ED+SG LRPID H+QYRRR+ RS A ARIQK
Sbjct: 43 LEAWERAYADDRSWEALEEDDSGLLRPIDTKNLVHSQYRRRILLRS-AAAAARIQKGLIR 101
Query: 84 -----------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 132
A+EMD+RPSRMAVVAK EAF+REFFDQNPLS +GLVT+KDG+++ LT+
Sbjct: 102 YLYIVIDLSRAASEMDYRPSRMAVVAKCAEAFIREFFDQNPLSHVGLVTIKDGISHRLTE 161
Query: 133 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
+GGSPES I ALMGKL CSGDSSLQNAL+LV G L+QIPSYGH+EVL LYSAL+TCDPGD
Sbjct: 162 IGGSPESQINALMGKLECSGDSSLQNALELVHGYLNQIPSYGHKEVLFLYSALNTCDPGD 221
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
IMETI+KCK+SK+RCSVIGL+AE+FICKHLC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 222 IMETIEKCKKSKVRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 281
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPTDCRICGL 311
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPT+CR CGL
Sbjct: 282 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 341
Query: 312 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 371
LVSSPHLARSYHHLFP++PFDEVT + CFGCQQSL+++G + ++V C
Sbjct: 342 TLVSSPHLARSYHHLFPVSPFDEVT----FKLGQKGGQNCFGCQQSLINTGGQSNIHVRC 397
Query: 372 PKCKKHFCLECDIYIHESLHNCPGCESLRHSN 403
PKC HFC +CDIYIHESLHNCPGCES R S+
Sbjct: 398 PKCNHHFCFDCDIYIHESLHNCPGCESQRSSS 429
>gi|242076424|ref|XP_002448148.1| hypothetical protein SORBIDRAFT_06g022140 [Sorghum bicolor]
gi|241939331|gb|EES12476.1| hypothetical protein SORBIDRAFT_06g022140 [Sorghum bicolor]
Length = 431
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 281/390 (72%), Positives = 319/390 (81%), Gaps = 18/390 (4%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK---- 83
LEAWER+YAD+RSWE+LQEDESG L PID A H+QYRRRL RS A ARIQK
Sbjct: 41 LEAWERAYADERSWESLQEDESGLLHPIDTKALVHSQYRRRLLLRSAAAAAARIQKGLIR 100
Query: 84 -----------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 132
A+EMD+RPSRMAVVAK EAF+REFFDQNPLS +GLVT+KDG+A+ LT+
Sbjct: 101 YLYIVIDLSRAASEMDYRPSRMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGIAHRLTE 160
Query: 133 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
+GGSPES IKALMGKL CSGDSSLQNAL+LV G L Q+PSYGH+EVLILYSAL+T DPGD
Sbjct: 161 IGGSPESQIKALMGKLECSGDSSLQNALELVHGYLDQVPSYGHKEVLILYSALNTFDPGD 220
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
IMETI KCK+SKIRCSVIGL+AE+FICKHLC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 221 IMETITKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 280
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPTDCRICGL 311
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPT+CR CGL
Sbjct: 281 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 340
Query: 312 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 371
LVSSPHLARSYHHLFP+APFDEVTP + + R CF CQQSL + + L+V C
Sbjct: 341 TLVSSPHLARSYHHLFPVAPFDEVTP--VPNRIQRGGQICFSCQQSLFNPDGQSNLHVRC 398
Query: 372 PKCKKHFCLECDIYIHESLHNCPGCESLRH 401
PKC +HFCL+CDIYIHESLHNCPGCES R+
Sbjct: 399 PKCNQHFCLDCDIYIHESLHNCPGCESQRN 428
>gi|255570827|ref|XP_002526366.1| btf, putative [Ricinus communis]
gi|223534325|gb|EEF36037.1| btf, putative [Ricinus communis]
Length = 465
Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust.
Identities = 284/375 (75%), Positives = 322/375 (85%), Gaps = 19/375 (5%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
M++SER+R+NGE EEE+ DEDD GL+AWER+Y D+RSWEALQEDESG LRPIDN A
Sbjct: 1 MSHSERRRMNGEGEEEDGDEDDIDGDGLDAWERTYTDERSWEALQEDESGLLRPIDNKAI 60
Query: 61 YHAQYRRRLRDRSLVATTARIQK---------------AAEMDFRPSRMAVVAKQVEAFV 105
YHAQYRRR+R ++T+ARIQK A EMD +PSRM V+A+ VEAF+
Sbjct: 61 YHAQYRRRIRS---LSTSARIQKGLIRFLYIVVDLSRAAGEMDIKPSRMVVIARHVEAFI 117
Query: 106 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQG 165
REFFDQNPLSQIGLVT+KDGVA+ LT+LGGSPESHIKAL GKL C+GDSSLQNALDLV+G
Sbjct: 118 REFFDQNPLSQIGLVTIKDGVAHPLTELGGSPESHIKALTGKLECAGDSSLQNALDLVRG 177
Query: 166 LLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQD 225
L QIP+YGHREVLILYSALSTCDPGDIMETIQ CK+SKIRCSVIGLSAEMFICKHLCQ+
Sbjct: 178 YLDQIPAYGHREVLILYSALSTCDPGDIMETIQNCKKSKIRCSVIGLSAEMFICKHLCQE 237
Query: 226 TGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK 285
TGG YSVA+DE+H KEL++EHAPPPPAIAEFAIANLIKMGFPQR+ EGSISICSCHKE K
Sbjct: 238 TGGLYSVAMDETHLKELLLEHAPPPPAIAEFAIANLIKMGFPQRSAEGSISICSCHKEAK 297
Query: 286 VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRN 345
VG GY CPRCKARVC+LPT+CRICGL LVSSPHLARSYHHLFPIAPFDEV+ ++ ++
Sbjct: 298 VGEGYICPRCKARVCDLPTECRICGLTLVSSPHLARSYHHLFPIAPFDEVSQR-QSELQH 356
Query: 346 RSRSTCFGCQQSLLS 360
R + TCFGCQQSLL+
Sbjct: 357 RPQKTCFGCQQSLLN 371
>gi|226531944|ref|NP_001142175.1| uncharacterized protein LOC100274342 [Zea mays]
gi|194707472|gb|ACF87820.1| unknown [Zea mays]
gi|414586431|tpg|DAA37002.1| TPA: hypothetical protein ZEAMMB73_625811 [Zea mays]
Length = 428
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 280/389 (71%), Positives = 316/389 (81%), Gaps = 18/389 (4%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK---- 83
LEAWER+YAD+RSWE+LQEDESG LRP+D HAQYRRRL RS A ARIQK
Sbjct: 38 LEAWERAYADERSWESLQEDESGLLRPVDTKTLVHAQYRRRLLLRSAAAAAARIQKGLIR 97
Query: 84 -----------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 132
A+EMD+RPSRMAVVAK EAF+REFFDQNPLS +GLVT+KDG+A+ LT+
Sbjct: 98 YLYIVIDLSRAASEMDYRPSRMAVVAKHAEAFIREFFDQNPLSHVGLVTIKDGIAHRLTE 157
Query: 133 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
+GGSPES IKALMGKL CSGDSSLQNALDLV G L Q+PSYGH+EVLILYSAL+T DPGD
Sbjct: 158 IGGSPESQIKALMGKLECSGDSSLQNALDLVHGYLDQVPSYGHKEVLILYSALNTFDPGD 217
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
I ETI KCK+SKIRCSVIGL+AE+FICKHLC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 218 ITETIAKCKKSKIRCSVIGLAAEIFICKHLCEETGGSYTVALDESHFKELLLEHAPPPPA 277
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPTDCRICGL 311
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPT+CR CGL
Sbjct: 278 IAEYAAANLIKMGFPQRGAEELISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 337
Query: 312 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 371
LVSSPHLARSYHHLFP+ PFDEVTP + + R CF CQQSL + + L+V C
Sbjct: 338 TLVSSPHLARSYHHLFPVPPFDEVTP--VPNRIQRGGQICFSCQQSLYNPDGQSNLHVRC 395
Query: 372 PKCKKHFCLECDIYIHESLHNCPGCESLR 400
PKC +HFCL+CDIYIHESLHNCPGCES R
Sbjct: 396 PKCNQHFCLDCDIYIHESLHNCPGCESQR 424
>gi|32489532|emb|CAE04735.1| OSJNBa0043L24.23 [Oryza sativa Japonica Group]
gi|116310777|emb|CAH67570.1| OSIGBa0101P20.13 [Oryza sativa Indica Group]
Length = 432
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 274/392 (69%), Positives = 318/392 (81%), Gaps = 16/392 (4%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK---- 83
LEAWER+YADDRSWEALQEDESG LRPID HAQYRRRL RS + ARIQK
Sbjct: 41 LEAWERAYADDRSWEALQEDESGLLRPIDTKTLVHAQYRRRLLLRSAASAAARIQKGLIR 100
Query: 84 -----------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 132
A+EMD+RPSRMAVVAK E F+REFFDQNPLS +G+VT+KDG+++ LT+
Sbjct: 101 YLYIVIDLSRAASEMDYRPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTE 160
Query: 133 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
+GGSPES IKALMGKL CSG+ SLQNAL+LV G L Q+PSYGH+EVL LYSAL+TCDPGD
Sbjct: 161 IGGSPESQIKALMGKLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGD 220
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
IMETI KCK+SKIRCSVIGL+AE+FICK+LC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 221 IMETIAKCKKSKIRCSVIGLAAEIFICKYLCEETGGSYTVALDESHFKELLLEHAPPPPA 280
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPTDCRICGL 311
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK VCELPT+CR CGL
Sbjct: 281 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNVCELPTECRTCGL 340
Query: 312 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 371
LVSSPHLARSYHHLFP+ PFDEV+ + N + C+GCQQS ++ ++ L+V C
Sbjct: 341 TLVSSPHLARSYHHLFPVQPFDEVSSVHPNRLGQKGGQKCYGCQQSFINPDSQSSLHVRC 400
Query: 372 PKCKKHFCLECDIYIHESLHNCPGCESLRHSN 403
PKC +HFCL+CDIYIHESLHNCPGCES R S+
Sbjct: 401 PKCNQHFCLDCDIYIHESLHNCPGCESQRSSS 432
>gi|449525401|ref|XP_004169706.1| PREDICTED: general transcription factor IIH subunit 2-like, partial
[Cucumis sativus]
Length = 329
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/328 (78%), Positives = 291/328 (88%), Gaps = 2/328 (0%)
Query: 84 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 143
A EMDFRPSRMAVVAK V+AFVREFFDQNPLSQIGLVT+KDG ANCLTDLGGSPESH+KA
Sbjct: 2 ATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTDLGGSPESHVKA 61
Query: 144 LMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKES 203
LMGKL CSGD+SLQN L+LV L+QIPSYGHREVL+LYSAL++CDPGDIMET+QKCK S
Sbjct: 62 LMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGDIMETVQKCKTS 121
Query: 204 KIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIK 263
KIRCSVIGL+AE+FIC+HLCQ+TGGSYSVALDESHFKEL++EHAPPPPAIA+ A+ NLIK
Sbjct: 122 KIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIADSAMPNLIK 181
Query: 264 MGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSY 323
MGFPQRA E SI+ICSCHKE KVG GYTCPRCKARVCELPT+CRICGL L+SSPHLARSY
Sbjct: 182 MGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLISSPHLARSY 241
Query: 324 HHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLL--SSGNKPGLYVACPKCKKHFCLE 381
HHLFPI PFDEV+ +DPR++ CFGCQ+SL+ S+GN P + V+CPKCK+HFCL+
Sbjct: 242 HHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRVSCPKCKQHFCLD 301
Query: 382 CDIYIHESLHNCPGCESLRHSNPIVANE 409
CDIYIHESLHNCPGCES R ++E
Sbjct: 302 CDIYIHESLHNCPGCESFRRPKLATSDE 329
>gi|168025049|ref|XP_001765047.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683634|gb|EDQ70042.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 394
Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/385 (61%), Positives = 293/385 (76%), Gaps = 22/385 (5%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK------ 83
A+ER YAD+RSWE LQEDESG LR +D AQ +R+ R R RIQ+
Sbjct: 6 AFERQYADERSWEELQEDESGMLR-VDV-----AQQQRQHRKRMSAMAGPRIQRGIIRYL 59
Query: 84 ---------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
AAEMD RPSRM +V VEAFVREFFDQNPLS +G++ +KDG+A+ LTDL
Sbjct: 60 FVLLDFSRAAAEMDLRPSRMGIVVDCVEAFVREFFDQNPLSHLGVILLKDGIAHQLTDLS 119
Query: 135 GSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
GSPE+HI+AL + +GD+S+QN LDL +G L+QIPSYGHREVL++YSALST DPGD+M
Sbjct: 120 GSPETHIRALRSNMESTGDASIQNGLDLARGYLTQIPSYGHREVLLVYSALSTIDPGDVM 179
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA 254
ET+Q+CK++ IRCSV+GLSAE++ICK LC+ TGG YSVA +E H KELIMEHAPPP A A
Sbjct: 180 ETVQECKKANIRCSVVGLSAEIYICKLLCEQTGGMYSVATNEGHLKELIMEHAPPPAAQA 239
Query: 255 EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 314
E ++A+L++MGFPQR E ++++C+CH+EVK+G GYTCPRCKARVCELPT C ICGL LV
Sbjct: 240 EMSVASLVRMGFPQRGAEDAVALCACHREVKMGGGYTCPRCKARVCELPTQCHICGLTLV 299
Query: 315 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNK-PGLYVACPK 373
SSPHLARSYHHLFP++PF+EV L + R +C+GC Q L + G K G+ + CP+
Sbjct: 300 SSPHLARSYHHLFPVSPFEEVENLASANGRQSLSKSCYGCLQELPTPGGKVKGVRLECPR 359
Query: 374 CKKHFCLECDIYIHESLHNCPGCES 398
C++HFC +CD YIHESLHNCPGCES
Sbjct: 360 CRQHFCFDCDNYIHESLHNCPGCES 384
>gi|302791231|ref|XP_002977382.1| hypothetical protein SELMODRAFT_232956 [Selaginella moellendorffii]
gi|300154752|gb|EFJ21386.1| hypothetical protein SELMODRAFT_232956 [Selaginella moellendorffii]
Length = 394
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 224/404 (55%), Positives = 302/404 (74%), Gaps = 35/404 (8%)
Query: 16 EEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLV 75
EEED+ ++ EAWER+YADDRSWE+L EDESG L+ D+ RR ++
Sbjct: 2 EEEDKAPDM----EAWERAYADDRSWESLIEDESGLLKAGDDVQQQRQHRRRLIQ----- 52
Query: 76 ATTARIQK---------------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLV 120
A+ RIQ+ A E+DFRPSRMAVVAK VE FVRE+FDQNPLSQ+G++
Sbjct: 53 ASGPRIQRGIIRYLCLILDFSRAAGEIDFRPSRMAVVAKAVEDFVREYFDQNPLSQLGII 112
Query: 121 TVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 180
+K+G+A+ +T+L GSPE+HI+AL L G++SLQN L+L + IPSYGHREV+I
Sbjct: 113 VMKNGIASVVTELSGSPEAHIRALKSNLESFGEASLQNGLELAHTYVQHIPSYGHREVVI 172
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 240
++SALSTCDPG+I+ET++KCK ++++CSV+GL+AE++ICKH+ Q+TGGSY+VA++E H K
Sbjct: 173 VFSALSTCDPGNILETVKKCKAARMKCSVVGLTAEIYICKHISQETGGSYAVAMNEGHLK 232
Query: 241 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 300
E+++EH PPP A+ + + A+L++MGFPQR EG+++IC+CHKE+K+G GY CPRC+ARVC
Sbjct: 233 EILLEHVPPPAAMPDASSASLVRMGFPQRGSEGAVAICACHKELKIGGGYICPRCRARVC 292
Query: 301 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS----TCFGCQQ 356
ELPT+C +CGL LVSS HLARSYHHLFPI FDE+ L D R +S +CFGC+
Sbjct: 293 ELPTECSLCGLALVSSAHLARSYHHLFPIPTFDEL----LVDASLRGKSSFAGSCFGCRI 348
Query: 357 SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLR 400
L SG+ L + CP+CK+ FC +CD+YIHESLHNCPGCE+L+
Sbjct: 349 QLSGSGS---LRLRCPRCKRDFCFDCDVYIHESLHNCPGCETLQ 389
>gi|302786380|ref|XP_002974961.1| hypothetical protein SELMODRAFT_232450 [Selaginella moellendorffii]
gi|300157120|gb|EFJ23746.1| hypothetical protein SELMODRAFT_232450 [Selaginella moellendorffii]
Length = 394
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/404 (54%), Positives = 301/404 (74%), Gaps = 35/404 (8%)
Query: 16 EEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLV 75
EEED+ ++ EAWER+YADDRSWE+L EDESG L+ D+ RR ++
Sbjct: 2 EEEDKAPDM----EAWERAYADDRSWESLIEDESGLLKAGDDVQQQRQHRRRLIQ----- 52
Query: 76 ATTARIQK---------------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLV 120
A+ RIQ+ A E+DFRPSRMAVVAK VE FVRE+FDQNPLSQ+G++
Sbjct: 53 ASGPRIQRGIIRYLCLILDFSRAAGEIDFRPSRMAVVAKAVEDFVREYFDQNPLSQLGII 112
Query: 121 TVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 180
+K+G+A+ +T+L GSPE+HI+AL L G++SLQN L+L + IPSYGHREV+I
Sbjct: 113 VMKNGIASVVTELSGSPEAHIRALKSNLESFGEASLQNGLELAHTYVQHIPSYGHREVVI 172
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 240
++SALSTCDPG+I+ET++KCK ++++CSV+GL+AE++ICKH+ Q+TGGSY+VA++E H K
Sbjct: 173 VFSALSTCDPGNILETVKKCKAARMKCSVVGLTAEIYICKHISQETGGSYAVAMNEGHLK 232
Query: 241 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 300
E+++EH PPP A+ + + A+L++MGFPQR EG+++IC+CHKE+++G GY CPRC+ARVC
Sbjct: 233 EILLEHVPPPAAMPDASSASLVRMGFPQRGSEGAVAICACHKELRIGGGYICPRCRARVC 292
Query: 301 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS----TCFGCQQ 356
ELPT+C +CGL LVSS HLARSYHHLFPI FDE+ L D R +S +CFGC+
Sbjct: 293 ELPTECSLCGLALVSSAHLARSYHHLFPIPTFDEL----LVDASLRGKSSFAGSCFGCRI 348
Query: 357 SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLR 400
L G+ L + CP+CK+ FC +CD+YIHESLHNCPGCE+L+
Sbjct: 349 QLSGGGS---LRLRCPRCKRDFCFDCDVYIHESLHNCPGCETLQ 389
>gi|218195182|gb|EEC77609.1| hypothetical protein OsI_16588 [Oryza sativa Indica Group]
gi|222629181|gb|EEE61313.1| hypothetical protein OsJ_15417 [Oryza sativa Japonica Group]
Length = 509
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/293 (70%), Positives = 239/293 (81%), Gaps = 16/293 (5%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK---- 83
LEAWER+YADDRSWEALQEDESG LRPID HAQYRRRL RS + ARIQK
Sbjct: 41 LEAWERAYADDRSWEALQEDESGLLRPIDTKTLVHAQYRRRLLLRSAASAAARIQKGLIR 100
Query: 84 -----------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 132
A+EMD+RPSRMAVVAK E F+REFFDQNPLS +G+VT+KDG+++ LT+
Sbjct: 101 YLYIVIDLSRAASEMDYRPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTE 160
Query: 133 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
+GGSPES IKALMGKL CSG+ SLQNAL+LV G L Q+PSYGH+EVL LYSAL+TCDPGD
Sbjct: 161 IGGSPESQIKALMGKLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGD 220
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
IMETI KCK+SKIRCSVIGL+AE+FICK+LC++TGGSY+VALDESHFKEL++EHAPPPPA
Sbjct: 221 IMETIAKCKKSKIRCSVIGLAAEIFICKYLCEETGGSYTVALDESHFKELLLEHAPPPPA 280
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCELPT 304
IAE+A ANLIKMGFPQR E ISICSCHK++K G GY CPRCK + L +
Sbjct: 281 IAEYAAANLIKMGFPQRGAEDLISICSCHKKIKSGAEGYICPRCKVNIVNLAS 333
>gi|302830270|ref|XP_002946701.1| hypothetical protein VOLCADRAFT_72869 [Volvox carteri f.
nagariensis]
gi|300267745|gb|EFJ51927.1| hypothetical protein VOLCADRAFT_72869 [Volvox carteri f.
nagariensis]
Length = 430
Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 182/411 (44%), Positives = 261/411 (63%), Gaps = 39/411 (9%)
Query: 21 DDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTAR 80
++ L EA++R Y ++++W+ LQEDE G L +D +A A+ +R L A +AR
Sbjct: 21 ENELRRQEEAYQRQYENEQTWDQLQEDEFGNLF-VDKTAEQRARRKRLLS----AAQSAR 75
Query: 81 IQK---------------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 125
I+K A D RP+R+A + +F+REFFDQNPLSQ+G+ ++ G
Sbjct: 76 IRKGMIRYLLLVVDMSRAAKAQDLRPNRLACILGLCRSFIREFFDQNPLSQLGIAVMRGG 135
Query: 126 VANCLTDLGGSPESHIKAL-MGKLGC-SGDSSLQNALDLVQGLLSQIPSYGHREVLILYS 183
+ LTDL GSPE+ + L KLG +GD SLQNALDL +L +P YGHRE+L++++
Sbjct: 136 LVEKLTDLSGSPEAQVARLDAAKLGAPAGDVSLQNALDLSVSVLRSLPPYGHRELLVVFA 195
Query: 184 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 243
AL+TCDPG+++++++ CKE+ IR SV+G++AE+++C+ + +DT GSY VAL+E+H ++L+
Sbjct: 196 ALATCDPGNVLDSVRACKENNIRVSVVGVAAEVYVCRRITEDTRGSYGVALNEAHLEQLL 255
Query: 244 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG-YTCPRCKARVCEL 302
M H PPPA A A A L++MGFPQR+ E + S E ++ G YTCPRCK+RV EL
Sbjct: 256 MAHTTPPPATAAQAKAELVRMGFPQRSTEEASSAVFVGLEARLLSGSYTCPRCKSRVPEL 315
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT--------------PLCLNDPRNRSR 348
P +C ICGL L+SSPHLARSYHHLFP+ F E + P ++ +
Sbjct: 316 PCECHICGLTLISSPHLARSYHHLFPVPSFHEDSKERASEAAAVLRGQPAMRDEVPTSTG 375
Query: 349 STCFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCE 397
CFGC + + G L++ C +CK+ FC ECD Y+HE LHNCPGCE
Sbjct: 376 LYCFGCLREVSQPGAAGQLHLTLRCGQCKQVFCFECDAYVHEQLHNCPGCE 426
>gi|384251056|gb|EIE24534.1| transcription factor TFIIH, 44 kDa subunit, partial [Coccomyxa
subellipsoidea C-169]
Length = 420
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 185/414 (44%), Positives = 258/414 (62%), Gaps = 44/414 (10%)
Query: 29 EAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTAR-------- 80
EA++R Y D SWEALQEDE G LRP+D A+ RRRL + A R
Sbjct: 1 EAYQRQYEDYFSWEALQEDEFGRLRPLDFREEQRAK-RRRLLSAAATACIRRGMIRYLQI 59
Query: 81 ---IQKAAEM-DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
+ +AA + D RP+R+AV++ ++ F+R+FFD+NPLS +G++ ++DG+A LTD+ GS
Sbjct: 60 IVDLSRAASIGDMRPNRLAVMSGVLQGFIRKFFDENPLSHLGIIVMRDGIAQRLTDMAGS 119
Query: 137 PESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREV---LILYSA--------- 184
PE+HI L G L SGD+SLQNA+D+ L IP YGHRE ++L A
Sbjct: 120 PEAHISKLQGNLDASGDASLQNAMDMAAESLKSIPPYGHREACPQILLKPAHLLVLVLFA 179
Query: 185 -LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 243
LSTCDPG++++ ++ K++ IR S++G++AE+ ICK ++TGG+Y VAL+E HF++L+
Sbjct: 180 ALSTCDPGNVLDAVKAAKQNSIRVSIVGVAAEVHICKVFTKETGGTYGVALNEKHFEDLV 239
Query: 244 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV-GYTCPRCKARVCEL 302
EHAPPPP++A A A+L++MGF R +G K+ K+ G+TCPRCKARV +L
Sbjct: 240 FEHAPPPPSLATDAAASLVRMGFAHRNQDGVEGTAFIGKDCKLSSGGFTCPRCKARVVDL 299
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 362
P C ICGL L+SSPHLARSYHHLFP+ F E + +C+ C L S
Sbjct: 300 PCSCHICGLTLISSPHLARSYHHLFPVKAFTE---------GDSGAVSCYACLADLEPSS 350
Query: 363 ------NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANEG 410
+ G+ V CP C + FC +CD +IHE+LHNCPGC L + VA +G
Sbjct: 351 LDDDAPGEVGVVVRCPDCCQLFCFDCDAFIHETLHNCPGCLCLVDDD--VAEDG 402
>gi|281212115|gb|EFA86276.1| TFIIH subunit [Polysphondylium pallidum PN500]
Length = 438
Score = 340 bits (873), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 246/415 (59%), Gaps = 31/415 (7%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLE---------AWERSYADDRSWEALQEDESGF 51
M R+R N + + DED + + L+ WE + +R+W+ ++EDESG
Sbjct: 8 MMIGRRRRGNNKDDGYNLDEDQDPDHVLQLNDQGTNKYKWESQF--ERTWDDIEEDESG- 64
Query: 52 LRPI--------DNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEA 103
LRP AQ RR R + + A D +PSR + E+
Sbjct: 65 LRPSLQEERIMRTRRQRIDAQRVRRGMQRHICLIVDLSKTLASQDMKPSRHQCLLNSSES 124
Query: 104 FVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLV 163
F++EFFDQNP+SQI L+ K+ A LT+L G+P HI AL GD S+QN+L++
Sbjct: 125 FIKEFFDQNPISQISLIVTKNSKAEKLTELNGNPNRHITALKNTSAMEGDPSIQNSLEVA 184
Query: 164 QGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLC 223
LS +P YG RE++++YS+L+TCDPGD+ +TI+ K +IR S I ++AE+FICKH+
Sbjct: 185 ISTLSHVPKYGSREIIVIYSSLTTCDPGDLTKTIEILKNEQIRVSFIHMAAELFICKHIS 244
Query: 224 QDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKE 283
+ T G+ V L+E HF E +M H PPP + A L++MGFPQ+ +C CH++
Sbjct: 245 EQTHGTMKVVLNEEHFNECLMLHCQPPPTFGKTEAA-LVEMGFPQQHTSSIPMMCMCHEQ 303
Query: 284 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 343
++ VGYTCPRC ++ CELPTDC+IC L LVSSPHLARSYHHLF + F E+ N
Sbjct: 304 LRY-VGYTCPRCSSKFCELPTDCQICNLSLVSSPHLARSYHHLFQVPLFTEI-----NWR 357
Query: 344 RNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
++ +CFGC L+ L+ CP+CK+ FC ECD +IHESLHNCPGCE+
Sbjct: 358 ELKTEISCFGC----LTVPKSSSLFFGCPRCKQSFCFECDQFIHESLHNCPGCEN 408
>gi|303285284|ref|XP_003061932.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456343|gb|EEH53644.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 404
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 184/419 (43%), Positives = 246/419 (58%), Gaps = 45/419 (10%)
Query: 18 EDEDDNLNG-----GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
E EDD+L L A+E+ Y + +WE L EDESG LR YR + R
Sbjct: 4 EPEDDDLAAEEQASSLRAFEKHYQSENTWEDLVEDESGMLRVTTGD----KGYREKRRKI 59
Query: 73 SLVATTARI---------------QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 117
+L A+ + + Q E D RPSR+AV++ + F REFF+QNPLSQ+
Sbjct: 60 ALAASNSHVCKGMIRFVYVVLDLSQAVNEEDMRPSRLAVISSLMYKFFREFFNQNPLSQL 119
Query: 118 GLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHRE 177
GLV ++G+A +T+L G+PE+HI AL L +GD S+QN+L+ V L Q+P YG RE
Sbjct: 120 GLVVTRNGIAERVTELSGNPETHIAALKENLDAAGDMSIQNSLEQVHASLVQLPMYGSRE 179
Query: 178 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDES 237
VL + SALSTCDPG++ I K +KIR SV+ ++AEM +C+ + ++TGG + VA +
Sbjct: 180 VLFVVSALSTCDPGNVHTAIAAAKNAKIRVSVVSVAAEMHVCRRMTEETGGIFGVAQSQH 239
Query: 238 HFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKA 297
H +EL+M HAPPPP E +L++MGFPQ+ + S G Y CPRCK+
Sbjct: 240 HLEELLMAHAPPPPLNEESTKPSLVEMGFPQKRPLDKDAFFSGR-----GGDYVCPRCKS 294
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQS 357
RV ELP+ C +C L LVSS HLARSYHHLFP+ PF E L D + ++CF C
Sbjct: 295 RVEELPSQCTVCKLTLVSSAHLARSYHHLFPVPPFTEGFGL---DDEGKRHTSCFACYVD 351
Query: 358 L------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANEG 410
S+ N P + CPKCKK FC CD+YIHE LHNCPGCE ++ +A EG
Sbjct: 352 FEEGNESTSNENAPSV---CPKCKKTFCFVCDVYIHEKLHNCPGCELVK----FLAEEG 403
>gi|159490896|ref|XP_001703409.1| transcription factor TFIIH, 44 kDa subunit [Chlamydomonas
reinhardtii]
gi|158280333|gb|EDP06091.1| transcription factor TFIIH, 44 kDa subunit [Chlamydomonas
reinhardtii]
Length = 413
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 183/391 (46%), Positives = 266/391 (68%), Gaps = 30/391 (7%)
Query: 29 EAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK----- 83
EA++R Y ++++W+ LQEDE G L +D +A A+ +R L A +ARI+K
Sbjct: 30 EAYQRQYENEQTWDQLQEDEHGNLF-VDKTAEQRARRQRLLS----AAQSARIRKGMIRY 84
Query: 84 ----------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
A+ D RP+R+ + +FVREFFDQNPLSQ+G+ ++ G+ LTDL
Sbjct: 85 VLLVVDLSRAASAQDLRPNRLGCMLSLCRSFVREFFDQNPLSQLGIAVMRGGLVEKLTDL 144
Query: 134 GGSPESHIKAL-MGKLGC-SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 191
GSPE+ + L GKLG +GD+SLQNAL+L LL Q+P YGHRE+L+L++AL++CDPG
Sbjct: 145 SGSPEAQVARLDAGKLGAPAGDASLQNALELGVSLLKQLPPYGHRELLLLFAALASCDPG 204
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 251
+++++++ CK++ IR SV+G++AE+++C+ + +DTGG+Y VAL+E H ++L+M H+PPPP
Sbjct: 205 NVLDSVKACKDNNIRVSVVGVAAEVYVCRRITEDTGGTYGVALNEGHLEQLLMAHSPPPP 264
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG-YTCPRCKARVCELPTDCRICG 310
A A A A L++MGFPQR+ E + S +E ++ G YTCPRC++RV ELP +C CG
Sbjct: 265 ATAAQAKAELVRMGFPQRSTEEASSAVFVGQEARLLPGSYTCPRCRSRVPELPVECHTCG 324
Query: 311 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA 370
L L+SSPHLARSYHHLFP+ P+ E + + + + CFGC + + G K L++
Sbjct: 325 LTLISSPHLARSYHHLFPVQPYHEDSEVMTT-----TGAYCFGCLREVSEPGVKGQLHLT 379
Query: 371 --CPKCKKHFCLECDIYIHESLHNCPGCESL 399
C +CK+ FC ECD Y+HESLHNCPGCE L
Sbjct: 380 LRCGQCKQVFCFECDAYVHESLHNCPGCEFL 410
>gi|330804328|ref|XP_003290148.1| TFIIH subunit [Dictyostelium purpureum]
gi|325079746|gb|EGC33332.1| TFIIH subunit [Dictyostelium purpureum]
Length = 423
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 172/407 (42%), Positives = 240/407 (58%), Gaps = 27/407 (6%)
Query: 7 KRLNGEAEEEEEDEDDNLNGGLE------AWERSYADDRSWEALQEDESGFLRPIDN--- 57
KR+N +EE+ L G E WE+ ++SW ++EDE G ++
Sbjct: 13 KRINKSLFDEEDGPVHVLQVGDEDGKSKYKWEKEL--EKSWLDIREDEHGLRVSVEKERS 70
Query: 58 -------SAFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFD 110
S Q RR R L + A D +PSR V+ + E F++EFFD
Sbjct: 71 NRNRRLKSTNIDIQRVRRGMQRHLCLVLDLSKTLANQDLKPSRYQVLIQNTEQFIKEFFD 130
Query: 111 QNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQI 170
QNP+SQ+ ++ K+ A +++L G+P+ HI+A+ + G+ S+QN+LD+ L +
Sbjct: 131 QNPISQLSIIITKNSKAEKISELSGNPQRHIQAMKDAIAMEGEPSIQNSLDVAISSLCYV 190
Query: 171 PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 230
P YG REVL L+S+L+TCDP D+ +TIQ K+ IR S I L+AE++IC+H+ + T G+
Sbjct: 191 PKYGSREVLFLFSSLTTCDPTDLAKTIQTLKQENIRVSFIHLAAELYICRHIAEQTNGTS 250
Query: 231 SVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGY 290
V L+E HF E + PPP I + A L++MGFPQ+ S C CH+++K GY
Sbjct: 251 KVILNEEHFLENLYSKCQPPPTIGKVEAA-LVEMGFPQQITSSVPSTCICHEKMKYS-GY 308
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST 350
CPRC + CELPTDC+IC L LVSSPHLARSYHHLFPI F+EV LN + T
Sbjct: 309 ICPRCGVKSCELPTDCQICNLSLVSSPHLARSYHHLFPIPLFEEVNWKELN-----TNVT 363
Query: 351 CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 397
C+ C S S + L+ +CP+C + FCLECD+YIHE+LHNCPGCE
Sbjct: 364 CYSCLTS--SETSILSLFFSCPRCDQVFCLECDMYIHEALHNCPGCE 408
>gi|255073175|ref|XP_002500262.1| predicted protein [Micromonas sp. RCC299]
gi|226515524|gb|ACO61520.1| predicted protein [Micromonas sp. RCC299]
Length = 427
Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/426 (41%), Positives = 244/426 (57%), Gaps = 58/426 (13%)
Query: 18 EDEDDNLNGGLEAWERSYA-DDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVA 76
E +D++L +A A +R+WE L+EDE+G LR QYR + R ++ A
Sbjct: 3 EPDDEDLAAEEQAASLKVACPERTWEDLEEDETGRLRITHGDK----QYREKRRKIAMAA 58
Query: 77 TTARI---------------QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVT 121
+ + Q E D RPSR+AVV+ + F RE+F+QNPLSQ+GLV
Sbjct: 59 ANSHVCKGMIRFLYVVVDLSQAVNEADMRPSRLAVVSGILYKFFREYFNQNPLSQLGLVV 118
Query: 122 VKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 181
++G+A LT+L GSPESHI AL L +GD S+QN+L+ VQ L+Q+P+YG REVL +
Sbjct: 119 TRNGIAERLTELSGSPESHITALKENLEAAGDMSIQNSLEQVQSSLAQLPTYGTREVLFV 178
Query: 182 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 241
SALS+CDPG++ I K + IR SV+ ++AE+ IC+ + ++TGG + V+ + H ++
Sbjct: 179 VSALSSCDPGNVHTAIAAAKSANIRVSVVSVAAELHICRRMTEETGGMFGVSQSQHHLED 238
Query: 242 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARV-- 299
L+M HAPPPP + A+L++MGFPQ+ + S G Y CPRC +RV
Sbjct: 239 LLMAHAPPPPLNEQATKASLVEMGFPQKRPLDKGAFFSGR-----GGEYVCPRCASRVEV 293
Query: 300 --------------------CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLC 339
ELP C +C L LVSSPHLARSYHHLFP+APF+ P+
Sbjct: 294 NPTHPKFVENIKINNPVTFLQELPAQCSVCSLTLVSSPHLARSYHHLFPVAPFEVHRPVI 353
Query: 340 ---LNDPRNRSRSTCFGCQQSLLSSGNK-----PGLYVACPKCKKHFCLECDIYIHESLH 391
LND + CF C SG + P + CP+CKK +C +CD++IHE LH
Sbjct: 354 MQELNDAAKLDATNCFACNLKFDRSGARGNDDAPSV---CPRCKKIYCFQCDVFIHEKLH 410
Query: 392 NCPGCE 397
NCPGCE
Sbjct: 411 NCPGCE 416
>gi|260815126|ref|XP_002602325.1| hypothetical protein BRAFLDRAFT_282199 [Branchiostoma floridae]
gi|229287633|gb|EEN58337.1| hypothetical protein BRAFLDRAFT_282199 [Branchiostoma floridae]
Length = 396
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 169/391 (43%), Positives = 244/391 (62%), Gaps = 33/391 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS----------LVATTAR 80
WE Y +++WE LQED +G L+ + + A+ RRRL+DR L
Sbjct: 12 WEGDY--EKTWEVLQEDAAGSLQASVDDIIHRAK-RRRLQDRQVNVRLGMMRHLFVVVDM 68
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
Q + D +P+R+ V K +E F+ E+FDQNP+SQ+G++T K+ A LT+LGG+P+ H
Sbjct: 69 SQSMEDQDLKPTRILVTLKLLENFIEEYFDQNPISQLGVITTKNKRAEKLTELGGNPKRH 128
Query: 141 IKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+ L + C G+ S+ N+LDL L +P++ REVLI+ +L+TCDPGDI T++
Sbjct: 129 VTQLRTLSSASCVGEPSIMNSLDLAAQTLKHMPTHTSREVLIIMGSLTTCDPGDINITMK 188
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
K+ IRCSVIGL+AE+ +CK LC T G+Y + L+++HFK+L++EH PPPA
Sbjct: 189 MVKDLNIRCSVIGLAAEVQVCKKLCNMTNGTYGIILEDTHFKDLLLEHCTPPPATVN-TD 247
Query: 259 ANLIKMGFPQRA---GEGSI--SICSCHKEVKVG----VGYTCPRCKARVCELPTDCRIC 309
++LIKMGFPQ S+ S+C CH++ + GY CP+C A+ CELP +C+IC
Sbjct: 248 SSLIKMGFPQHTISQDHDSVKPSMCMCHQDTEAQSFTPSGYFCPQCHAKYCELPVECKIC 307
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYV 369
GL LVS+PHLARSYHH FP+ F E+ L+ +R C GCQ L N P +Y
Sbjct: 308 GLTLVSAPHLARSYHHFFPLENFREIPLEELDAELSR---FCTGCQVQL----NGPVVY- 359
Query: 370 ACPKCKKHFCLECDIYIHESLHNCPGCESLR 400
C +C + FC++CD++IHE+LH+CPGC + R
Sbjct: 360 CCTRCSRPFCIDCDLFIHETLHSCPGCINKR 390
>gi|384487455|gb|EIE79635.1| hypothetical protein RO3G_04340 [Rhizopus delemar RA 99-880]
Length = 395
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 172/383 (44%), Positives = 235/383 (61%), Gaps = 25/383 (6%)
Query: 18 EDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD------ 71
E +DD GG AWE Y RSW+ LQED G L + + + RR L+D
Sbjct: 20 EHQDDTNTGGY-AWEEEYK--RSWDVLQEDAEGNLSSVVSQLQQQRKRRRLLKDTDVIQR 76
Query: 72 ---RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 128
R + + E D RPSR+ + + FV EFFDQNP+SQ+G++ +DG+A
Sbjct: 77 GIIRHVFIIIDLSEAMNEKDLRPSRIELTLTYAQQFVVEFFDQNPISQLGIIITRDGIAE 136
Query: 129 CLTDLGGSPESHIKALMGKLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALS 186
LT+L G+P HIKAL K SG+ SLQNAL L + + +PS+G +EVL+++ +L+
Sbjct: 137 KLTELSGNPTDHIKALKSKKNTETSGEPSLQNALQLARASMLGVPSHGSKEVLLIFGSLT 196
Query: 187 TCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEH 246
TCDP DI +TI ++ +R +V+GL+AE+ IC+ L +Y V L+E+HFK+L+ E
Sbjct: 197 TCDPSDIHDTIDLLRKELVRVNVVGLAAEVQICRAL-----RTYGVVLNEAHFKDLLFEV 251
Query: 247 APPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDC 306
PPP + +NLIKMGFP+R E + + C CH ++ +G GY CPRCK++VCELP+DC
Sbjct: 252 VPPPAVMQNKNTSNLIKMGFPKRLVEDNATFCVCHSKLTMG-GYICPRCKSKVCELPSDC 310
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
ICGL LVSSPHLARSYHHLFP+ FDEV + + + CF C L S G
Sbjct: 311 DICGLTLVSSPHLARSYHHLFPVDNFDEV-----KNNISGYATHCFSCLSQLDKSEVVGG 365
Query: 367 LYVACPKCKKHFCLECDIYIHES 389
+CPKCK+ FC ECDI++HES
Sbjct: 366 NRFSCPKCKQEFCAECDIFVHES 388
>gi|320166414|gb|EFW43313.1| general transcription factor IIH [Capsaspora owczarzaki ATCC 30864]
Length = 427
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 172/416 (41%), Positives = 249/416 (59%), Gaps = 36/416 (8%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR--------LR 70
DEDD++N WE+ Y +R+W+ LQED G LR S H + +RR +R
Sbjct: 14 DEDDDMNNKGYVWEQQY--ERTWDVLQEDAQGSLRA---SVEEHERAKRRRFKTQVQGVR 68
Query: 71 DRSLVATTARIQKAAEMD---FRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVA 127
+ T + ++ MD +P+R+ + +E FV EFFDQNP+SQ+ + +D A
Sbjct: 69 RGMMRHLTIILDMSSRMDDPDLKPTRLEHSIRLLEQFVPEFFDQNPISQLNFIISRDAKA 128
Query: 128 NCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 187
+++LGG+P H+++L K +G+ SLQN+L+L + L +PS+ +EVLI+ L++
Sbjct: 129 ERISELGGNPAKHLESLRKKASTAGEISLQNSLELARESLRLMPSHTSKEVLIIMGGLAS 188
Query: 188 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHA 247
CDPGDI +TI + I CSVIGLSAE+ ICK+L + T G ++V +DESHF++++ +H
Sbjct: 189 CDPGDIFQTISLLELDNIHCSVIGLSAEVRICKYLAEKTKGVHNVIIDESHFRDMLFQHI 248
Query: 248 PPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCR 307
PPPA + A LI+MGFP++ + ++C+CHK + G GY CP+CKA+ CELPT C
Sbjct: 249 TPPPASSRTE-ALLIRMGFPRQNLSKAATLCACHKLFRAG-GYICPQCKAKCCELPTTCA 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEV-------------TPLCLNDPRNRSRSTCFGC 354
+CGL LVSSPHLARSYHHLFP+APF EV L N +C GC
Sbjct: 307 VCGLTLVSSPHLARSYHHLFPLAPFREVPLAHPPADANGLLAGLVANSTTLALHPSCRGC 366
Query: 355 QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANEG 410
+ + + CP C +CL+CDI+IH++LH CP C +L + VAN G
Sbjct: 367 SKPTATMRSA----FQCPTCCHVYCLDCDIFIHDTLHTCPSCVALLDGSA-VANGG 417
>gi|307198378|gb|EFN79320.1| General transcription factor IIH subunit 2 [Harpegnathos saltator]
Length = 400
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/390 (42%), Positives = 233/390 (59%), Gaps = 35/390 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +++WEA++ED+ G L P A+ +R+L R L
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEPSVADIILSAKRKRQLERKQGARLGMMRHLYIILDAS 69
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R K +E F+ EFF QNP+SQ+G++T ++ A ++DL G+ + HI
Sbjct: 70 ESMSNQDLKPTRFLCSLKLLENFIEEFFYQNPISQLGVITTRNKRAEKISDLAGNSKKHI 129
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
K L + + +G+ SLQN+L+L L +PS+ +E+LI+ AL+TCDPGDI ETIQ
Sbjct: 130 KELQSLQQTMVTGEPSLQNSLELALKSLRLLPSHASKEILIIIGALTTCDPGDINETIQN 189
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K IRCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA A
Sbjct: 190 MKSDGIRCSVIGLAAELYICKRMANATGGEHGVALDDKHYKEQLNSHIDPPPAATRLDAA 249
Query: 260 NLIKMGFPQRAGEGSI-----SICSCHKEVK------VGVGYTCPRCKARVCELPTDCRI 308
L+KMGFP A ++ ++C CH E + GY CP+C ++ CELP +CR
Sbjct: 250 -LVKMGFPHHALHSTVTDTPMTVCMCHAESSDELFKLMSTGYLCPQCLSKHCELPVECRS 308
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYH+LFP+A F E+ + S+CFGCQ+ K +Y
Sbjct: 309 CGLTLVSAPHLARSYHYLFPVATFTEIE-------FENNHSSCFGCQKVFTQKDKK--IY 359
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 360 I-CEKCDQPFCLDCEIFIHESLHTCPGCAT 388
>gi|443732857|gb|ELU17421.1| hypothetical protein CAPTEDRAFT_178402 [Capitella teleta]
Length = 390
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 169/388 (43%), Positives = 243/388 (62%), Gaps = 28/388 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRP-IDNSAFYHAQYRRRLRD--------RSLVATTAR 80
WE Y +R+WEAL+ED+ G L+ +D+ + R LRD R L
Sbjct: 8 TWETEY--ERTWEALKEDDDGSLQAAVDDVIHRAKRRRALLRDPNVRLGMMRHLFIVVDL 65
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D RP+R+ K +E FV EFFDQNP+SQ+G++T + A+ LT+LGG+P+ H
Sbjct: 66 STSMEDQDLRPNRLFASLKLLEKFVEEFFDQNPISQLGILTTSNKRADKLTELGGNPKRH 125
Query: 141 IKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I+AL G + C G+ SLQNALDL L +P + REVLI++ +L+TCDPG I++TIQ
Sbjct: 126 IQALRGLKERACIGEPSLQNALDLAAQTLKHMPGHSSREVLIVFGSLTTCDPGSIIDTIQ 185
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
K + ++ S+IGL+A++ IC+ +C DT G Y V +DE HFKEL+ + PP A +
Sbjct: 186 SMKANNVQVSIIGLAADVRICRKICHDTQGQYHVIVDEPHFKELLNQQVTPPNATSSTE- 244
Query: 259 ANLIKMGFPQRAGEGSISICSCHKEVKVGV-----GYTCPRCKARVCELPTDCRICGLQL 313
++LI+MGFP+ S+C+CH E GY CP+C+++ CELP +CR CGL L
Sbjct: 245 SSLIRMGFPRHEQGQQPSMCNCHLESSSSEGFSTGGYFCPQCRSKYCELPVECRACGLTL 304
Query: 314 VSSPHLARSYHHLFPIAPFDEV-TPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 372
VS+PHLARSYHHLF + PF+EV T + + ++ + C+ CQ L N P Y C
Sbjct: 305 VSAPHLARSYHHLFLLEPFNEVRTEVAI---FHKEKRICYSCQSQL----NDPMSY-QCS 356
Query: 373 KCKKHFCLECDIYIHESLHNCPGCESLR 400
KC++ FC++CD+++HE+LH+CPGC S R
Sbjct: 357 KCRQVFCVDCDLFVHETLHSCPGCSSSR 384
>gi|405976292|gb|EKC40804.1| General transcription factor IIH subunit 2 [Crassostrea gigas]
Length = 399
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 163/393 (41%), Positives = 238/393 (60%), Gaps = 33/393 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WEA+QEDE G L+ + A+ R+ L R L
Sbjct: 11 WETEY--ERTWEAIQEDEKGSLQASVDDIISKAKKRKLLEKIKNVRLGMMRHLFLIIDMS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ ++ D +P+R+ K +E FV E+FDQNP+SQ+G++ K+ A +++LGG+P HI
Sbjct: 69 EAMSDQDLKPTRLLSTLKLLEYFVEEYFDQNPISQLGIIITKNKRAEKVSELGGNPRRHI 128
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
L + C G+ SLQN+L+L L +P + REVL++ +L+TCDP +I+ TI
Sbjct: 129 TTLQSLADKVCHGEPSLQNSLELAHQTLRHMPGHASREVLVVMGSLTTCDPDNIISTISM 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
++ +RCSVIGL+AE+ +CK LC++T GSYSV LDE HFK+L+ +H PPPA A +
Sbjct: 189 LRDGNVRCSVIGLAAEVCVCKKLCKETHGSYSVILDECHFKDLLTQHVTPPPATASTE-S 247
Query: 260 NLIKMGFPQRA----GEGSISICSCHKEVK-----VGVGYTCPRCKARVCELPTDCRICG 310
+LI+MGFP E S+C CH + K GY CP+CK++ CELP +C+ CG
Sbjct: 248 SLIRMGFPHHQLSADKEERPSMCMCHLDSKNSQGFSSTGYFCPQCKSKYCELPIECKACG 307
Query: 311 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA 370
L LVS+PHLARSYHHLFP+ F E+ + S CF CQ ++ + +Y+
Sbjct: 308 LTLVSAPHLARSYHHLFPLDQFREIP-----TAQVGSNVLCFSCQTAV----QELNVYI- 357
Query: 371 CPKCKKHFCLECDIYIHESLHNCPGCESLRHSN 403
C C++ +CL+CD++IHE+LH+CPGC S R +
Sbjct: 358 CDNCERIYCLDCDLFIHETLHSCPGCASSRQTQ 390
>gi|328874281|gb|EGG22647.1| TFIIH subunit [Dictyostelium fasciculatum]
Length = 457
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 238/403 (59%), Gaps = 32/403 (7%)
Query: 12 EAEEEEEDEDDNLNGGLEA-----WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYR 66
+AE+ + D D L + WE + RSWE ++EDE G LRP + R
Sbjct: 22 DAEDGQGDTDHVLQTNDQGTQKYKWEEKFV--RSWETIEEDEKG-LRP-SLQEDRDTRTR 77
Query: 67 RRLRD--------RSLVATTARIQKAAEM-DFRPSRMAVVAKQVEAFVREFFDQNPLSQI 117
R+L+D + V + K+ E+ D +P+R V E F++EFFDQNP+SQ+
Sbjct: 78 RQLKDDQRVRRGMQRHVCLVIDLSKSLEIHDLKPNRHQAVLIAAENFIKEFFDQNPISQL 137
Query: 118 GLVTVKDGVANCLTDLGGSPESHIKAL-MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHR 176
L+ K+ A ++DL +P HI+ L M GD S+QN+LD+ LS +P YG R
Sbjct: 138 SLIITKNSKAEKISDLSSNPNRHIQLLKMVSSTIEGDPSIQNSLDVSIATLSYVPKYGSR 197
Query: 177 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDE 236
EV+ +YS+L+TCDPGD+ +TI K IR S + L+AE+++C+H+ T G+ V E
Sbjct: 198 EVIFIYSSLTTCDPGDLSKTITTLKNENIRVSFVHLAAELYVCRHISDATNGTMKVIETE 257
Query: 237 SHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCK 296
H E ++ H PPP I + A L++MGFPQ+ + +C CH++ K VGYTCPRC+
Sbjct: 258 HHLNEALILHCQPPPTIGKVEAA-LVEMGFPQQHTSQTPMMCVCHEQFKY-VGYTCPRCQ 315
Query: 297 ARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQ 356
++ CELPTDC+ICGL LVSSPHLARSYHHLF + F EV P + + C+GC
Sbjct: 316 SKFCELPTDCQICGLSLVSSPHLARSYHHLFQVPIFREVNPKSI-----QPNLKCYGCLL 370
Query: 357 SLLSSGNKPG-LYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
+ KP L CP+CKK FC +CD +HES+HNCPGCE+
Sbjct: 371 PI-----KPNYLNYGCPRCKKIFCFDCDQVVHESIHNCPGCEN 408
>gi|66823583|ref|XP_645146.1| TFIIH subunit [Dictyostelium discoideum AX4]
gi|74861629|sp|Q86KZ2.2|TF2H2_DICDI RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=TFIIH basal transcription factor complex subunit 2
gi|60473387|gb|EAL71333.1| TFIIH subunit [Dictyostelium discoideum AX4]
Length = 461
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/423 (39%), Positives = 247/423 (58%), Gaps = 42/423 (9%)
Query: 2 TNSERKRLN--------GEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLR 53
N++ KR N G A + +++D N WE + +++W + EDE G LR
Sbjct: 8 NNAQNKRTNRSLYDDEDGPAHVLQTNDEDGTNKY--KWENRF--EKTWLTIDEDEHG-LR 62
Query: 54 PIDNSAFYHAQYRRRLRDRS-LVATTARIQKAAE---------------MDFRPSRMAVV 97
P + R + +DR +++ R+++ + D +PSR V+
Sbjct: 63 PSNQEERNTRNRRLKNKDRDGILSQDQRVRRGMQRHLCLILDLSKTLSNQDLKPSRYQVL 122
Query: 98 AKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQ 157
+ VE F++EFFDQNP+SQ+ ++ K+ A +++L G+ HI+A+ + G+ S+Q
Sbjct: 123 LQNVELFIKEFFDQNPISQLSIIITKNSKAEKISELSGNRLRHIQAMKDAIAMEGEPSIQ 182
Query: 158 NALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMF 217
N+L++ L +P YG REVL ++S+L+TCDP + +TIQ K IR S I ++AE++
Sbjct: 183 NSLEVALSSLCYVPKYGSREVLFIFSSLTTCDPSSLQKTIQSLKNESIRVSFIHMAAELY 242
Query: 218 ICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISI 277
ICK + + T G+ V L+E HF E +M PPP I + A L++MGFPQ+ S
Sbjct: 243 ICKAIAEQTNGTSKVILNEEHFNESLMLKCQPPPTIGKTEAA-LVEMGFPQQITSTVPSP 301
Query: 278 CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP 337
C CH+++K GY CPRC + CELPTDC+IC L LVSSPHLARSYHHLF I F+EV
Sbjct: 302 CICHEKMKYS-GYICPRCGVKSCELPTDCQICNLSLVSSPHLARSYHHLFQIPLFNEVNW 360
Query: 338 LCLNDPRNRSRSTCFGCQQSLLSSGNKP--GLYVACPKCKKHFCLECDIYIHESLHNCPG 395
LN TC GC LSS K L+ +CP+C++ FCL+CD++IHESLHNCPG
Sbjct: 361 KELN-----KNVTCIGC----LSSSEKSILSLFFSCPRCQEIFCLDCDLFIHESLHNCPG 411
Query: 396 CES 398
CE+
Sbjct: 412 CEN 414
>gi|332017887|gb|EGI58547.1| General transcription factor IIH subunit 2 [Acromyrmex echinatior]
Length = 598
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/388 (42%), Positives = 234/388 (60%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +++WEA++ED+ G L ++A+ +R+L R L
Sbjct: 208 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQLERKQGARLGMMRHLYIILDAS 265
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A ++DL G+ + HI
Sbjct: 266 ESMSNQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKISDLAGNSKKHI 325
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
K L + + G+ SLQN+L+L LL +PS+ +E+L++ AL+TCDPGDI ETI+
Sbjct: 326 KELQILQQTVVGGEPSLQNSLELATKLLKLLPSHASKEILVIIGALTTCDPGDINETIRN 385
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K IRCSVIGL+AE++ICK + TGG +SVALD+ H+KE + H PPPA A
Sbjct: 386 MKLDSIRCSVIGLAAELYICKRMANITGGEHSVALDDKHYKEQLNAHIDPPPAATRLD-A 444
Query: 260 NLIKMGFPQR-----AGEGSISICSCH-----KEVK-VGVGYTCPRCKARVCELPTDCRI 308
L+KMGFP A + SI++C CH + VK + GY CP+C ++ CELP +CR
Sbjct: 445 ALVKMGFPHHALHSNAPDTSITVCMCHAHNSDETVKFMTTGYLCPQCISKHCELPVECRA 504
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYH+LFP+ PF E+ P + + CFGCQ++ K
Sbjct: 505 CGLTLVSAPHLARSYHYLFPVDPFKEIAP-------DSDYTICFGCQKAFAQKDKK---V 554
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
AC KC + FCL+C+I+IHE LH CPGC
Sbjct: 555 YACGKCNQMFCLDCEIFIHEILHTCPGC 582
>gi|307169945|gb|EFN62454.1| General transcription factor IIH subunit 2 [Camponotus floridanus]
Length = 401
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 237/401 (59%), Gaps = 39/401 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +++WEA++ED+ G L ++A+ +R+L R L
Sbjct: 13 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQLERKQGARLGMMRHLYIILDAS 70
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A ++DL G+ + HI
Sbjct: 71 ESMSNQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKISDLAGNSKKHI 130
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
K L + + +G+ SLQN+L+L L +PS+ +E+LI+ AL+TCDPGDI ETI+
Sbjct: 131 KELRALQQTIVTGEPSLQNSLELATKSLKLLPSHASKEILIIIGALTTCDPGDINETIRN 190
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K IRCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA A
Sbjct: 191 MKLDSIRCSVIGLAAELYICKRMANITGGEHGVALDDKHYKEQLNAHIDPPPAATRLDAA 250
Query: 260 NLIKMGFPQR-----AGEGSISICSCHKE-----VKV-GVGYTCPRCKARVCELPTDCRI 308
L+KMGFP A + S+++C CH E VK+ GY CP+C ++ CELP +CR
Sbjct: 251 -LVKMGFPHHALHSSASDTSMTVCMCHAENSDESVKLMSTGYLCPQCFSKHCELPVECRA 309
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYH+LFP+ PF EVT + S CFGCQ++ K
Sbjct: 310 CGLTLVSAPHLARSYHYLFPVEPFREVT-------FEGNHSFCFGCQKTFAQKDKK---V 359
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANE 409
C KC + FCL+C+I+IH+ LH CPGC +NP N+
Sbjct: 360 YTCEKCNQTFCLDCEIFIHDILHTCPGCA----TNPATYNK 396
>gi|328772181|gb|EGF82220.1| hypothetical protein BATDEDRAFT_19068 [Batrachochytrium
dendrobatidis JAM81]
Length = 409
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/410 (40%), Positives = 242/410 (59%), Gaps = 28/410 (6%)
Query: 12 EAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL-- 69
+ ++EE NG AWE Y RSW+ L ED+SG L+ + + +RR
Sbjct: 2 DINDDEEHPQSGENGQGYAWEEEYK--RSWDILMEDDSGSLQGMVATMQQQLLLKRRRLR 59
Query: 70 --RDRSLVATTARIQKA----------AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 117
+ ++V I++ AE+D RP+R+ +E FV EFFDQNPLS +
Sbjct: 60 KETESAIVVQRGIIRQIIIVIDLSAAMAELDLRPNRLDCTLNFLEMFVVEFFDQNPLSHL 119
Query: 118 GLVTVKDGVANCLTDLGGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGH 175
G++ KDG+ +L G+P +KAL + +G+ SLQNAL+L + L+ +P +
Sbjct: 120 GIIGTKDGMVEKWAELSGNPSEILKALTKRSNRETAGEPSLQNALELARRSLAHVPMHVS 179
Query: 176 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 235
RE+++LY +L++CDPGDI ETI + IR SVIGL+AE+ +CK +C T G Y+V ++
Sbjct: 180 REIIVLYGSLTSCDPGDIQETINDLCKENIRVSVIGLAAEVQVCKKMCASTNGVYNVIMN 239
Query: 236 ESHFKELIMEHAPPPPAI-AEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPR 294
+ H+KE++ H PPPP + + + +N+I+MGFP + +CSCH+ + G+ CPR
Sbjct: 240 DVHYKEILFAHIPPPPLLQTQLSASNIIQMGFPMMKIFDDMVLCSCHQN-PIQKGHICPR 298
Query: 295 CKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC 354
C A +C +PTDC +C L L+SSP LARSYHHLFP+ F E+ P + S+ CF C
Sbjct: 299 CSATICNIPTDCCLCSLTLISSPSLARSYHHLFPVPNFTEIPP--VQSTSYPSQVECFSC 356
Query: 355 QQSLLSSGNKPGLYV------ACPKCKKHFCLECDIYIHESLHNCPGCES 398
Q + G Y+ ACP+CK H CL+CD+YIH++LHNCPGC S
Sbjct: 357 QTPSSMTSFHSGTYMIPTARYACPRCKVHVCLDCDVYIHDTLHNCPGCMS 406
>gi|332373040|gb|AEE61661.1| unknown [Dendroctonus ponderosae]
Length = 395
Score = 310 bits (795), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 167/400 (41%), Positives = 244/400 (61%), Gaps = 36/400 (9%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD------- 71
DEDD WE Y +++WEA++ED+ GFL A+ RR+ +
Sbjct: 2 DEDDPKE---YRWETGY--EKTWEAIKEDDDGFLEASVAVIILRAKRRRQAQKKGNTKLG 56
Query: 72 --RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 129
R L + + D +P+RM + +E F+ EFFDQNP+SQ+G++ +++ A
Sbjct: 57 MMRHLFLILDCSESMSSQDLKPTRMLCSLRILEGFIEEFFDQNPISQMGIILMQNKRAEK 116
Query: 130 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 187
+ +LGG+ HIK L M K G+ SLQN L+ L +P++ REVL++ +L+T
Sbjct: 117 VCELGGNFRKHIKYLRSMSKTSLLGEPSLQNGLEDAFSSLKLVPTHASREVLVIMGSLTT 176
Query: 188 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHA 247
CDP DI TIQK K+ IRCS+IGL+AE+ IC+ L +T G+Y++ LD+SH+K+L+ +
Sbjct: 177 CDPTDINTTIQKFKQEGIRCSIIGLAAEVHICRTLANETKGTYNIILDDSHYKDLLYQQV 236
Query: 248 PPPPAIAEFAIANLIKMGFP-QRAGEGS---ISICSCH----KEVKVGV-GYTCPRCKAR 298
PPPA A+LIKMGFP Q EG+ ++IC CH +E K+ GY CP+C ++
Sbjct: 237 EPPPAAVALE-ASLIKMGFPHQMNTEGTDEPLTICMCHVDSTEEGKLTTGGYYCPQCLSK 295
Query: 299 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 358
CELP +CR CGL LVS+PHLARSYHHLFP A F+E+ ++ +TC+ CQ++
Sbjct: 296 YCELPVECRACGLTLVSAPHLARSYHHLFPPANFEEMQ-------FDKQVTTCYACQKT- 347
Query: 359 LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
+ G+K CP CK+ FC++CDI+IH++LH CPGC +
Sbjct: 348 FNDGDKQ--VYQCPTCKRMFCIDCDIFIHDTLHTCPGCAT 385
>gi|406604786|emb|CCH43771.1| General transcription factor IIH subunit 2 [Wickerhamomyces
ciferrii]
Length = 420
Score = 310 bits (794), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 166/391 (42%), Positives = 231/391 (59%), Gaps = 27/391 (6%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYR--------RRLRDRSLVA 76
NGG +WE Y RSW+ ++EDE+G + I + H + R +R R+L+
Sbjct: 39 NGGY-SWEDEY--QRSWDIVKEDEAGSIAGIVSGLLQHQKKRIIKNVTPFQRGIIRNLIL 95
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
E D RP+R ++ FV EFFDQNP+SQ+G++ +++G+ ++ +GG+
Sbjct: 96 ILDLSSSMLEKDLRPNRHSITITNAIQFVTEFFDQNPISQLGIIIMRNGIGQLVSQVGGN 155
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P+ HI AL + KL GD SLQNAL++ +GLL + S+ REVLI+Y +L + DPG+I
Sbjct: 156 PQEHIDALKSIKKLEPKGDPSLQNALEMSRGLLMHVASHCTREVLIIYGSLLSLDPGNIH 215
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPP 250
+T+ E KIR +IGLSA++ ICK +C+ T SY+V L+E HFKEL M+ P
Sbjct: 216 KTVNSLVEEKIRVKIIGLSAQVSICKEICKKTNFGDENSYNVILNEQHFKELFMDAVVPL 275
Query: 251 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICG 310
P L+KMGFP R E S S CSCH ++ G GY CP CK+++C LPT C C
Sbjct: 276 PVNKINKSFTLVKMGFPYRISEDSPSFCSCHSKLTYG-GYICPNCKSKICSLPTICPCCN 334
Query: 311 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL---LSSGNKPGL 367
L+ S HLARSYHHL P+ F EV P+ +N + CFGCQ L L +
Sbjct: 335 TMLILSTHLARSYHHLLPLKNFIEV-PV----DKNYDVNLCFGCQMELPDGLITQTSSSR 389
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGCES 398
Y C C FC++CD++IHE+LHNCPGCE+
Sbjct: 390 Y-KCVDCNNQFCIDCDVFIHETLHNCPGCEN 419
>gi|350418129|ref|XP_003491749.1| PREDICTED: general transcription factor IIH subunit 2-like [Bombus
impatiens]
Length = 400
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 240/390 (61%), Gaps = 35/390 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +++WEA++ED+ G L ++A+ +R++ R L
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQMEKKVGARLGMMRHLYVILDAS 69
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A +++L G+ + H+
Sbjct: 70 ESMSLQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELAGNSKKHV 129
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
K + M ++ G+ SLQN+++L L +PS+ +E+LI+ AL+TCDPGDI ETIQ
Sbjct: 130 KEVQNMQQIAPVGEPSLQNSIELALKSLRLLPSHASKEILIIVGALTTCDPGDINETIQN 189
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +RCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA A
Sbjct: 190 MKTDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAATRLDAA 249
Query: 260 NLIKMGFPQR-----AGEGSISICSCHKE-----VK-VGVGYTCPRCKARVCELPTDCRI 308
L+KMGFP A + ++++C CH E VK + GY CP+C ++ CELP +CR
Sbjct: 250 -LVKMGFPHHALHSSANDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCELPVECRA 308
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYH+LFP+ F EV + + STC+GCQ+ +LS +K +Y
Sbjct: 309 CGLTLVSAPHLARSYHYLFPVESFKEVV-------FSGTPSTCYGCQK-ILSQKDKK-VY 359
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 360 I-CNKCNETFCLDCEIFIHESLHTCPGCAT 388
>gi|383853156|ref|XP_003702089.1| PREDICTED: general transcription factor IIH subunit 2-like
[Megachile rotundata]
Length = 400
Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/390 (41%), Positives = 238/390 (61%), Gaps = 35/390 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +++WEA++ED+ G L ++A+ +R++ R L
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQMNRKIGARLGMMRHLYIILDAS 69
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + DF+P+R K +E FV EFF QNP+SQ+G++ ++ A +++L G+ + HI
Sbjct: 70 ESMSIQDFKPTRFLCSLKLLEDFVEEFFYQNPISQLGVIITRNKRAEKVSELVGNSKKHI 129
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
K + M ++ +G+ SLQN+L+L L +PS+ +E+LI+ AL+TCDPGDI ETIQ
Sbjct: 130 KEIQNMQQMVPAGEPSLQNSLELALKSLRLLPSHASKEILIIIGALTTCDPGDINETIQG 189
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K IRCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA A
Sbjct: 190 MKSDCIRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAATRLDAA 249
Query: 260 NLIKMGFPQRA-----GEGSISICSCHKE-----VK-VGVGYTCPRCKARVCELPTDCRI 308
L+KMGFP A + ++++C CH E VK + GY CP+C ++ CELP +CR
Sbjct: 250 -LVKMGFPHHALHSSVNDSAMAVCMCHAENSEESVKLISTGYLCPQCLSKHCELPVECRA 308
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYH+LFP+ PF E + + S C+GCQ++ K +Y
Sbjct: 309 CGLTLVSAPHLARSYHYLFPVEPFTETV-------FDGTPSLCYGCQKNFSQMDKK--IY 359
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 360 I-CNKCSQAFCLDCEIFIHESLHTCPGCAT 388
>gi|340715742|ref|XP_003396368.1| PREDICTED: general transcription factor IIH subunit 2-like [Bombus
terrestris]
Length = 400
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 160/390 (41%), Positives = 240/390 (61%), Gaps = 35/390 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +++WEA++ED+ G L ++A+ +R++ R L
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNAKRKRQMEKKVGARLGMMRHLYVILDAS 69
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A +++L G+ + H+
Sbjct: 70 ESMSLQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELAGNSKKHV 129
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
K + M ++ G+ SLQN+++L L +P++ +E+LI+ AL+TCDPGDI ETIQ
Sbjct: 130 KEVQNMQQIAPVGEPSLQNSIELALKSLRLLPTHASKEILIIVGALTTCDPGDINETIQN 189
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +RCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA A
Sbjct: 190 MKTDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAATRLDAA 249
Query: 260 NLIKMGFPQR-----AGEGSISICSCHKE-----VK-VGVGYTCPRCKARVCELPTDCRI 308
L+KMGFP A + ++++C CH E VK + GY CP+C ++ CELP +CR
Sbjct: 250 -LVKMGFPHHALHSSANDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCELPVECRA 308
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYH+LFP+ F EV + + STC+GCQ+ +LS +K +Y
Sbjct: 309 CGLTLVSAPHLARSYHYLFPVESFKEVV-------FSGTPSTCYGCQK-ILSQKDKK-VY 359
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 360 I-CNKCNETFCLDCEIFIHESLHTCPGCAT 388
>gi|42415511|ref|NP_963875.1| general transcription factor IIH subunit 2 [Danio rerio]
gi|28278887|gb|AAH45397.1| General transcription factor IIH, polypeptide 2 [Danio rerio]
Length = 392
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/389 (43%), Positives = 232/389 (59%), Gaps = 37/389 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEDILFQAKRKRVFESHGQVRLGMMRHLFVIIDSS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++T K+ A LTDL G+P+ HI
Sbjct: 69 RSMEDQDLKPNRLTSTLKLMEHFVEEYFDQNPISQIGIITTKNKRAEKLTDLAGNPKKHI 128
Query: 142 KALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
AL + C G+ SL N+L++ L +P++ REVL+++S+L+TCDPG+I E I+
Sbjct: 129 TALRKAVDSTCVGEPSLYNSLNMALQTLKHMPAHTSREVLVIFSSLTTCDPGNIYELIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
KIR SVIGLSAE+ +C L ++TGGSY+V LDESHFKEL++ H PPPA + +
Sbjct: 189 LNGLKIRVSVIGLSAEVRVCTILTRETGGSYNVILDESHFKELLLLHVKPPPASSS-SEC 247
Query: 260 NLIKMGFPQRA--------GEGSISIC----SCHKEVKVGVGYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ S E+ +G GY CP+C+A+ ELP +C+
Sbjct: 248 SLIRMGFPQHVIASLSDQDAKPSFSMAHLDSSSEPELSLG-GYYCPQCRAKYTELPVECK 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
+CGL LVS+PHLARS+HHLFP+ F E TPL C CQ L K
Sbjct: 307 VCGLTLVSAPHLARSFHHLFPLEAFQE-TPL----EEYEGERFCEACQGEL-----KDKS 356
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
C CKK FC+ECDI+IH++LH CPGC
Sbjct: 357 VFTCLACKKVFCVECDIFIHDTLHCCPGC 385
>gi|390343479|ref|XP_794347.2| PREDICTED: general transcription factor IIH subunit 2-like
[Strongylocentrotus purpuratus]
Length = 409
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 172/406 (42%), Positives = 239/406 (58%), Gaps = 36/406 (8%)
Query: 21 DDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTAR 80
DD G WE Y +R+WEALQEDE G L+ + A+ RRRL DR
Sbjct: 3 DDEPEKGY-TWEGDY--ERTWEALQEDEEGSLQATVDDIIQRAK-RRRLEDRPSNVRLGM 58
Query: 81 IQ----------KAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 130
++ + D +P+R+A K +E F+ E+FDQNP+SQ+G++T + A L
Sbjct: 59 MRHLFILLDCSRSMEDQDLKPNRLACCTKLLEHFIEEYFDQNPISQVGIITSSNMRAEKL 118
Query: 131 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
T+LGG+P+ HI AL C + SLQNAL+L L +P + RE+L++ +L+TC
Sbjct: 119 TELGGNPQRHITALEKCNDKPCVKEPSLQNALELAAATLRHMPGHASREILVIMGSLTTC 178
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DPG+I +TIQ K+ IRC VIGL+A++ +C+ L T G+Y V LDE+HFKEL+MEH
Sbjct: 179 DPGNIHDTIQAMKDHSIRCCVIGLAADVRVCRKLATVTHGTYGVILDETHFKELLMEHTI 238
Query: 249 PPPAIAEFAIANLIKMGFPQ------RAGEGSISICSCHKEVK----VGV-GYTCPRCKA 297
PPPA + I+MGFPQ ++ + S+C CH + K G GY CP+C++
Sbjct: 239 PPPARVNTE-PSPIRMGFPQHVIHTDKSKVSAPSMCMCHLDGKNSEGFGTGGYFCPQCQS 297
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQS 357
+ CELP +CR+CGL LVS+PHLARS+HHLFP+ F+E D + C GCQ
Sbjct: 298 KYCELPVECRVCGLTLVSAPHLARSFHHLFPLDRFEEFK---REDHDHPDSLFCQGCQSH 354
Query: 358 LLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSN 403
+ + CPKC FCL+C+++I ESLH+CPGC S R S
Sbjct: 355 I-----RDQTAYRCPKCSNVFCLDCELFIQESLHSCPGCASTRPSQ 395
>gi|110739908|dbj|BAF01859.1| putative transcription factor [Arabidopsis thaliana]
Length = 196
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 144/186 (77%), Positives = 161/186 (86%), Gaps = 1/186 (0%)
Query: 216 MFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSI 275
MFICKHLCQ+TGG YSVA+DE H K+L++EHAPPPPAIAEFAIANLIKMGFPQRA EGS+
Sbjct: 1 MFICKHLCQETGGLYSVAVDEVHLKDLLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGSM 60
Query: 276 SICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 335
+ICSCHKEVK+G GY CPRCKARVC+LPT+C ICGL LVSSPHLARSYHHLFPIAPFDEV
Sbjct: 61 AICSCHKEVKIGAGYMCPRCKARVCDLPTECTICGLTLVSSPHLARSYHHLFPIAPFDEV 120
Query: 336 TPL-CLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCP 394
L LND R + +CFGCQQSL+ +GNKP V C KCK +FCL+CDIYIHESLHNCP
Sbjct: 121 PALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPCVTCRKCKHYFCLDCDIYIHESLHNCP 180
Query: 395 GCESLR 400
GCES+
Sbjct: 181 GCESIH 186
>gi|449670653|ref|XP_002167169.2| PREDICTED: general transcription factor IIH subunit 2-like [Hydra
magnipapillata]
Length = 384
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/386 (41%), Positives = 232/386 (60%), Gaps = 35/386 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL-----------RDRSLVATTA 79
W Y +++WEA+QED+ G L+ + + A+ +R L R ++ +
Sbjct: 12 WLNEY--EKTWEAIQEDDDGLLQSSIDEIVHQAKRKRLLVRKGNVRLGMMRHLYIILDMS 69
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
+ K +++ RPSR+A + K +E F+ E+FDQNP+SQ ++ A +TDL G+P
Sbjct: 70 KSMKESDL-LRPSRLACLTKLLENFIVEYFDQNPISQ-----TRNKRAEKITDLSGNPNI 123
Query: 140 HIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
HI AL K G G+ SLQN+LD+ L +P + RE+LI++ +L+TCDPGDI TI
Sbjct: 124 HIAALQNFVKSGPEGEPSLQNSLDMALQFLGHLPKHASREILIVFGSLTTCDPGDIFTTI 183
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA 257
K IRCSV+GLSAE+ +CK + +T G Y+V LDE H +L++EH PP A
Sbjct: 184 NNLKNENIRCSVLGLSAEIKLCKTISSETNGIYNVILDEKHCNDLLLEHIRPPAAKLNVE 243
Query: 258 IANLIKMGFPQRAGEGSISICSCHKEVKVG-----VGYTCPRCKARVCELPTDCRICGLQ 312
A+L++MGFPQ ++C CH E+K GY CP+CK + CELP +C++CGL
Sbjct: 244 -ASLVRMGFPQHISNTYPALCLCHIELKNMQGFNCTGYFCPQCKNKYCELPVECKVCGLT 302
Query: 313 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 372
LVS+PHLARSY HLFP+ PF+EV + + S C GCQ++ + + + C
Sbjct: 303 LVSAPHLARSYQHLFPLPPFEEVRRI---ETAANKNSICQGCQRNCIDA-----IVYICK 354
Query: 373 KCKKHFCLECDIYIHESLHNCPGCES 398
+CK+ FC +CD++IHE+LH CPGC S
Sbjct: 355 ECKEMFCNDCDMFIHETLHTCPGCTS 380
>gi|380019349|ref|XP_003693572.1| PREDICTED: general transcription factor IIH subunit 2-like [Apis
florea]
Length = 405
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 242/393 (61%), Gaps = 36/393 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR-----SLVATTARIQKAA 85
WE Y +++WEA++ED+ G L ++ + +R++ + ++ I A+
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNVKRKRQMEKKVGARLGMMRHIYVILDAS 69
Query: 86 E----MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
E D +P+R K +E F+ EFF QNP+SQ+G++ ++ A +++L G+ + HI
Sbjct: 70 ESMSIQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELTGNSKKHI 129
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
K + M ++ +G+ SLQN+++L L +PS+ +E+LI+ AL+TCDPGDI ETI+
Sbjct: 130 KEVQSMQQITPAGEPSLQNSIELALKSLRLLPSHASKEILIIVGALTTCDPGDINETIKN 189
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +RCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA A
Sbjct: 190 MKSDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAATRLD-A 248
Query: 260 NLIKMGFPQRA-----GEGSISICSCHKE-----VK-VGVGYTCPRCKARVCELPTDCRI 308
L+KMGFP A + ++++C CH E VK + GY CP+C ++ CELP +CR
Sbjct: 249 ALVKMGFPHHALHSSTNDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCELPVECRA 308
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEV---TPLCLNDPRNRSRSTCFGCQQSLLSSGNKP 365
CGL LVS+PHLARSYH+LFP+ PF EV + P S C+GCQ+ + S +K
Sbjct: 309 CGLTLVSAPHLARSYHYLFPVEPFKEVEYRKEVTFEHP-----SICYGCQK-IFSQKDK- 361
Query: 366 GLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
+Y+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 362 KVYI-CNKCNQTFCLDCEIFIHESLHTCPGCAT 393
>gi|298708881|emb|CBJ30838.1| General transcription factor II H, polypeptide 2 [Ectocarpus
siliculosus]
Length = 412
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 166/409 (40%), Positives = 240/409 (58%), Gaps = 47/409 (11%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYH--------AQYRRRLRDRSLVAT 77
G AWE+ + +R+WE ++EDE G ++ + + + +R R L
Sbjct: 12 GAGYAWEKGF--ERTWEGVEEDEHGNIKTREEGQRRNRRVRRRVGGESIKRGMIRYLYLA 69
Query: 78 TARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
+ A+ D RPSR+AV + V+ FV +FDQNPLSQ+G++ ++G A +T+L G+P
Sbjct: 70 IDLSKTMADGDMRPSRLAVTLRIVQDFVTNYFDQNPLSQLGILVTREGRAEKITELSGNP 129
Query: 138 ESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
++H++AL G++SLQN L++ L +P YG+REV+++YS+LSTCDPGDI ETI
Sbjct: 130 KAHMEALTKDSDTKGEASLQNLLEMACTSLRAVPEYGNREVVVIYSSLSTCDPGDIHETI 189
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA--E 255
K K K+R SV+GL AEMF+ + L ++T G YS+A DE+H++E +M PPP E
Sbjct: 190 AKLKTHKVRASVVGLGAEMFVLRRLTEETSGDYSIAGDENHYRESLMAQCTPPPTPPGRE 249
Query: 256 FAI-ANLIKMGFPQRAGE--GSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 312
A+ A+L++MGFP + S+ +E+ V GY+CPRCK + ELP++C IC L
Sbjct: 250 GAMFADLVRMGFPAETQDVFPSLGYSGNRQELSVS-GYSCPRCKTKTSELPSECVICALP 308
Query: 313 LVSSPHLARSYHHLFPIAPFDEV------------------------TPLCLNDPRNRSR 348
LVSSPHLARSYHHLFP+ FDE+ + + S
Sbjct: 309 LVSSPHLARSYHHLFPVPQFDEIPAAAPAAAAAAASAGSAGGMGSGAGAGRATEEESASS 368
Query: 349 STCFGCQQSLLSSGNKPGL-YVACPKCKKHFCLECDIYIHESLHNCPGC 396
S C GC + L GL CP+C+ FCL+CD+Y+H+SLHNCPGC
Sbjct: 369 SYCAGCLRDL------SGLPRYRCPECRSAFCLDCDMYVHDSLHNCPGC 411
>gi|449271199|gb|EMC81725.1| General transcription factor IIH subunit 2 [Columba livia]
Length = 395
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 167/389 (42%), Positives = 233/389 (59%), Gaps = 37/389 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVATTAR 80
WE Y +R+WE L+EDESG L+ + A+ R+RL + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAK-RKRLYEHHGQVRLGMMRHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQ+GL+ K A +T+L G+ + H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVDEYFDQNPISQVGLIVTKSKRAEKMTELSGNSKKH 127
Query: 141 IKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I AL + CSG+ SL NAL+L L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 ITALKKAADMTCSGEPSLYNALNLAMQTLKHMPGHTSREVLIVFSSLTTCDPANIYDLIK 187
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
K KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+M H PPPA + +
Sbjct: 188 CLKAVKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLMHHVSPPPASSN-SE 246
Query: 259 ANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+
Sbjct: 247 CSLIRMGFPQHTIASLSDQDAKPSFSMAQLESSSEPGLTLGGYFCPQCRAKYCELPVECK 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
ICGL LVS+PHLARSYHHLFP+ F EV PL + C GCQ + +
Sbjct: 307 ICGLTLVSAPHLARSYHHLFPLDAFQEV-PL----EEYQGERYCQGCQGEM----KDQNV 357
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
Y+ C C+ FC+ECD+++H+SLH CPGC
Sbjct: 358 YI-CKVCQNAFCVECDVFVHDSLHCCPGC 385
>gi|213511927|ref|NP_001135173.1| general transcription factor IIE, polypeptide 2-2 [Salmo salar]
gi|197632439|gb|ACH70943.1| general transcription factor IIE, polypeptide 2-2 [Salmo salar]
Length = 393
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 168/391 (42%), Positives = 232/391 (59%), Gaps = 40/391 (10%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRR-----------RLRDRSLVATTA 79
WE Y +R+WE L+EDESG L+ + A+ +R +R +V T+
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATVEEILFQAKRKRVFESHGQVRLGMMRHLYVVIDTS 68
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
R + + D +P+R+ K VE FV E+FDQNP+SQ+G++T K+ A LTDL G+P+
Sbjct: 69 RTME--DQDLKPNRLTSTLKLVEYFVEEYFDQNPISQVGIITTKNKRAEKLTDLAGNPKK 126
Query: 140 HIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
HI AL C G+ SL N++ L L +P + REVLI++S+L+TCDP +I E +
Sbjct: 127 HIDALKKAKDSTCGGEPSLYNSISLAMQTLKHMPGHSSREVLIIFSSLTTCDPANIYELV 186
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA 257
+ K KIR SVIGLSAE+ +C L ++TGGSY V LDESHF+EL+M H PPPA + +
Sbjct: 187 KTLKALKIRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFRELLMFHVKPPPATSS-S 245
Query: 258 IANLIKMGFPQRA------GEGSISICSCHKEVKVG------VGYTCPRCKARVCELPTD 305
+LI+MGFPQ + S H + G GY CP+C+A+ ELP +
Sbjct: 246 ECSLIRMGFPQHTIASLSDQDAKPSFSQAHLDSTSGGPGLSMGGYFCPQCQAKYTELPVE 305
Query: 306 CRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP 365
C++CGL LVS+PHLARS+HHLFP+ F E +PL L+ +R R C CQ L K
Sbjct: 306 CKVCGLTLVSAPHLARSFHHLFPLEAFQE-SPLLLH---HRER-FCEACQGEL-----KD 355
Query: 366 GLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
CP C FC+ECD++IH++LH CP C
Sbjct: 356 RSVFTCPSCSSVFCVECDLFIHDTLHCCPSC 386
>gi|409044666|gb|EKM54147.1| hypothetical protein PHACADRAFT_185111 [Phanerochaete carnosa
HHB-10118-sp]
Length = 451
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 235/399 (58%), Gaps = 39/399 (9%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTAR 80
AWE SY R+WE +QEDE+G L + RR L R L+
Sbjct: 58 AWEASYT--RTWETVQEDEAGSLHTAVRDLIAKGRRRRLLAPAEAVRRTIIRHLILVLDL 115
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + ++ G+P+
Sbjct: 116 SSSMMDRDMRPTRFDLMLQYAREFIAEWFDQNPLGQIGIVGMRGGIGERIGEMSGNPQDV 175
Query: 141 IKALM--GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
++++ KL G+ SLQNA+++ + +S +P+ RE+ I++ +L+TCDPG+I +T+
Sbjct: 176 LRSIAERHKLEPVGEPSLQNAIEMARSSMSHLPTNSSREITIIFGSLTTCDPGNIHDTLD 235
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP-------- 250
+C + KIR S++ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP
Sbjct: 236 ECVKDKIRISLVALAAEMKICRELCVKTGGQFGVALNEGHFKDLLFELIPPPAQRALTRA 295
Query: 251 --PAIAEFAIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCELPTDCR 307
P A A A+LI MGFP R S S+C CH E+K G+ CPRC A+VC++PTDC
Sbjct: 296 NGPGAANPA-ADLIMMGFPTRLPVTSQPSLCVCHGELK-SEGFLCPRCLAKVCDVPTDCD 353
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----QQSLLS--- 360
ICGL +VSSPHLARSYHHLFP+ P+ +T L D +TC+GC Q+ +L
Sbjct: 354 ICGLMIVSSPHLARSYHHLFPVKPYTPITNL---DDATSLSATCYGCSVPFQEKVLQPNV 410
Query: 361 ---SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
G P CP+C+ FC ECD++IH+ LH CPGC
Sbjct: 411 PLVDGISPLGRYRCPECEHDFCTECDVFIHDVLHCCPGC 449
>gi|66549743|ref|XP_394997.2| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Apis mellifera]
Length = 405
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 159/393 (40%), Positives = 237/393 (60%), Gaps = 36/393 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +++WEA++ED+ G L ++ + +R++ R L
Sbjct: 12 WETGY--EKTWEAIKEDDHGLLEASVADIIHNVKRKRQMEKKIGARLGMMRHLYVILDAS 69
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R K +E F+ EFF QNP+SQ+G++ ++ A +++L G+ + HI
Sbjct: 70 ESMSIQDLKPTRFLCSLKLLEDFIEEFFYQNPISQLGVIITRNKRAEKVSELTGNSKKHI 129
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
K + M ++ +G+ SLQN+++L L +PS+ +E+LI+ AL+TCDPGDI ETI+
Sbjct: 130 KEVQSMQQITPAGEPSLQNSIELALKSLRLLPSHASKEILIIVGALTTCDPGDINETIKN 189
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +RCSVIGL+AE++ICK + TGG + VALD+ H+KE + H PPPA A
Sbjct: 190 MKLDSVRCSVIGLAAELYICKRMATATGGEHGVALDDKHYKEQLNMHIDPPPAATRLD-A 248
Query: 260 NLIKMGFPQRA-----GEGSISICSCHKE-----VK-VGVGYTCPRCKARVCELPTDCRI 308
L+KMGFP A + ++++C CH E VK + GY CP+C ++ CELP +CR
Sbjct: 249 ALVKMGFPHHALHSSTNDSAMAVCMCHAESSDESVKLLSTGYLCPQCLSKHCELPVECRA 308
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEV---TPLCLNDPRNRSRSTCFGCQQSLLSSGNKP 365
CGL LVS+PHLARSYH+LFP+ PF EV + P S C+GCQ+ + S
Sbjct: 309 CGLTLVSAPHLARSYHYLFPVEPFKEVEYRKEVTFEHP-----SICYGCQK--IFSQKDK 361
Query: 366 GLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
+Y+ C KC + FCL+C+I+IHESLH CPGC +
Sbjct: 362 KVYI-CNKCNQTFCLDCEIFIHESLHTCPGCAT 393
>gi|348680619|gb|EGZ20435.1| hypothetical protein PHYSODRAFT_345458 [Phytophthora sojae]
Length = 387
Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 161/392 (41%), Positives = 232/392 (59%), Gaps = 40/392 (10%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLR-----DRSLVATTARI--- 81
AWE A +RSW+ ++ED+SG L+ ID A Q +RRL + L+ T +
Sbjct: 10 AWEG--ALERSWDVIEEDDSGNLK-IDQ-AVKKQQRQRRLEIARNVRKGLIRYTYVVMDL 65
Query: 82 -QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ A D++P R+A + ++ FV+++FDQNP+SQ+G++ +K A L+DL G+P +H
Sbjct: 66 SRGMATKDWKPHRLACASDVLQQFVKDYFDQNPISQLGVIGIKGMTAEKLSDLSGNPNTH 125
Query: 141 IKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKC 200
++ + L + SLQNAL++ + L +P+YG RE++++Y L T DPGDI +T+
Sbjct: 126 MERIAAALAVDKEPSLQNALEIAKSSLKTVPAYGSREIVVVYGNLVTADPGDIFQTLASL 185
Query: 201 KESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA--I 258
K IR S IG+ AEM + + + T G+Y VA+D H K L+ P P +A A
Sbjct: 186 KRENIRVSFIGIGAEMHLLRRIADGTDGTYHVAVDAEHMKRLMTAFTFPSPTVATAASRF 245
Query: 259 ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPH 318
A L++MGFPQR G++S+C+CH+ VGY CPRCK++ C+LPT C++C L LVSSPH
Sbjct: 246 ATLVEMGFPQRR-SGALSLCTCHQAFTT-VGYLCPRCKSKSCDLPTTCQVCNLPLVSSPH 303
Query: 319 LARSYHHLFPIAPFDE--------------VTPLCLNDPRNRSRSTCFGCQQSLLSSGNK 364
LARSYHHLFP+A F + VTP + + CFGC L G
Sbjct: 304 LARSYHHLFPVAKFTQHLLRSGVTGEKGAKVTPSLV-------QKKCFGCLLPLGLDGE- 355
Query: 365 PGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
G C C+ FC ECD+Y+H+SLHNCPGC
Sbjct: 356 -GTAYECTTCQNVFCSECDMYVHDSLHNCPGC 386
>gi|149727084|ref|XP_001504093.1| PREDICTED: general transcription factor IIH subunit 2 [Equus
caballus]
Length = 395
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 165/388 (42%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIITKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP DI IQ
Sbjct: 129 TSLKKAVAMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSDIYGLIQT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSN-SEC 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSSEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
+ C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 I-CTVCRHVFCVDCDVFVHDSLHCCPGC 385
>gi|344272627|ref|XP_003408133.1| PREDICTED: general transcription factor IIH subunit 2-like
[Loxodonta africana]
Length = 395
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 232/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L++ L +P + REVLI++S+L+TCDP +I + ++
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLNMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLVKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSN-SEC 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C++
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKV 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CTVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|147862851|emb|CAN82988.1| hypothetical protein VITISV_011714 [Vitis vinifera]
Length = 199
Score = 301 bits (771), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/193 (75%), Positives = 156/193 (80%)
Query: 217 FICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSIS 276
F+ C T S L +SHFKEL++EHAPPPPAIAEFAIANLIKMGFPQRA EG IS
Sbjct: 6 FLLIQYCFITNISVLYLLLQSHFKELLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGVIS 65
Query: 277 ICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT 336
ICSCHKE KVG GYTCPRCKARVCELPT+CRICGL LVSSPHLARSYHHLFPI PFDEV+
Sbjct: 66 ICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIPPFDEVS 125
Query: 337 PLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
LN+P RS CFGCQ+SLL GNKP L VACPKCK+HFCL+CDIYIHESLHNCPGC
Sbjct: 126 LSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKCKQHFCLDCDIYIHESLHNCPGC 185
Query: 397 ESLRHSNPIVANE 409
ES RHS + E
Sbjct: 186 ESFRHSKIVSVTE 198
>gi|449514090|ref|XP_004174671.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 2 [Taeniopygia guttata]
Length = 410
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 164/389 (42%), Positives = 231/389 (59%), Gaps = 37/389 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVATTAR 80
WE Y +R+WE L+EDESG L+ + A+ R+RL + R L
Sbjct: 26 WEGGY--ERTWEILKEDESGSLKATIEDILFKAK-RKRLYEHHGQVRLGMMRHLYVVIDG 82
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQIGL+ K A +T+L G+ + H
Sbjct: 83 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGLIVTKSKRAEKMTELSGNSKKH 142
Query: 141 IKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+ AL + CSG+ SL N+L+L L +P + REVL++ S+L+TCDP +I + I+
Sbjct: 143 VTALKKAVDMNCSGEPSLYNSLNLAMQTLKHMPGHTSREVLVVLSSLTTCDPANIYDLIK 202
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
K K+R SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+M H PPPA + +
Sbjct: 203 CLKAVKVRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLMHHVSPPPA-SSTSE 261
Query: 259 ANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ G+ GY CP+C+A+ CELP +C+
Sbjct: 262 CSLIRMGFPQHTIASLSDQDAKPSFSMVQLENNSDPGLTLGGYFCPQCRAKYCELPVECK 321
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
ICGL LVS+PHLARSYHHLFP+ F EV PL + C GCQ + +
Sbjct: 322 ICGLTLVSAPHLARSYHHLFPLDAFQEV-PL----EEYKGERYCHGCQGEM----KDQNV 372
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
Y+ C C+ FC+ECD+++H+SLH CPGC
Sbjct: 373 YI-CKVCQNAFCVECDLFVHDSLHCCPGC 400
>gi|84370085|ref|NP_001033619.1| general transcription factor IIH subunit 2 [Bos taurus]
gi|122142864|sp|Q2TBV5.1|TF2H2_BOVIN RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=General transcription factor IIH polypeptide 2
gi|83638634|gb|AAI09594.1| General transcription factor IIH, polypeptide 2, 44kDa [Bos taurus]
gi|296475883|tpg|DAA17998.1| TPA: general transcription factor IIH subunit 2 [Bos taurus]
gi|440911341|gb|ELR61023.1| General transcription factor IIH subunit 2 [Bos grunniens mutus]
Length = 395
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKS 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + +
Sbjct: 189 LKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPASSN-SEC 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+ CQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYACQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CSVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|145348017|ref|XP_001418454.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578683|gb|ABO96747.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 407
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 165/386 (42%), Positives = 229/386 (59%), Gaps = 30/386 (7%)
Query: 27 GLEAWERSYADDRSWEALQEDE-SGFLRPIDNSAFYHAQYRR---------------RLR 70
L AWE+ Y +R+WE L+ED +G LR + A+ RR +R
Sbjct: 30 ALRAWEKKYQSERAWEDLEEDPVTGRLRVTSEAQTAKARERRAKMAALATSAGAAKGMIR 89
Query: 71 DRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 130
+V +R A E DFRP+R++VV + +F+RE+F+QNPLSQ+G++ ++GVA L
Sbjct: 90 FTYVVVDLSR--AANEEDFRPNRLSVVGQCATSFIREYFNQNPLSQLGIIVARNGVAERL 147
Query: 131 TDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 190
T+L GSPE+H AL L SGD SLQN L++ + L IPSYG REVL + S+LSTCDP
Sbjct: 148 TELSGSPEAHAAALRNALDASGDFSLQNTLNVARTSLKSIPSYGSREVLYIVSSLSTCDP 207
Query: 191 GDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP 250
G++ I K +K+R SV+ ++AE+ + + L ++TGG+Y V+L+ H +LIM HAPPP
Sbjct: 208 GNVWTEIAATKAAKVRVSVVAVAAELHVSRRLTEETGGTYGVSLNADHLDDLIMAHAPPP 267
Query: 251 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICG 310
P + ++L++MGFPQ+ ++ V G Y CPRC R+ ELP+ C +C
Sbjct: 268 PLPEDATKSSLVQMGFPQKKHLSKDALV-----VGTGGEYVCPRCSGRIDELPSQCAVCR 322
Query: 311 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA 370
L LVSSPHLARSYHHLFP+APF E T ++ + C C L+ +
Sbjct: 323 LTLVSSPHLARSYHHLFPVAPFKEYT---RDEASAKEVLECKAC----LALIKQTDPASK 375
Query: 371 CPKCKKHFCLECDIYIHESLHNCPGC 396
C +C FC CD YIHE LHNCP C
Sbjct: 376 CEQCSNVFCFACDCYIHEKLHNCPHC 401
>gi|426246343|ref|XP_004016954.1| PREDICTED: general transcription factor IIH subunit 2 [Ovis aries]
Length = 395
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + +
Sbjct: 189 LKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPASSN-SEC 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+ CQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYACQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CSVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|348543161|ref|XP_003459052.1| PREDICTED: general transcription factor IIH subunit 2-like
[Oreochromis niloticus]
Length = 392
Score = 301 bits (770), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 167/388 (43%), Positives = 225/388 (57%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ Y ++ +R + R L
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEEILYQSKRKRVIESHGQVRLGMMRHLYVVIDCS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +EAFV E+FDQNP+SQ+G++T K+ A LTDL G+P+ HI
Sbjct: 69 RSMEDQDLKPNRLTSTLKLMEAFVDEYFDQNPISQVGIITTKNKRAEKLTDLAGNPKKHI 128
Query: 142 KALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
ALM + C G+ SL N+L+L L +P + RE+LI+ S+L+TCDP +I E I+
Sbjct: 129 TALMKAVDTVCVGEPSLYNSLNLAIQTLKHMPGHTSREILIILSSLTTCDPANIYELIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K K+R SVIGLSAE+ +C L ++TGGSY V LDESHFKEL+M H PPPA + +
Sbjct: 189 LKSLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHIKPPPA-SSSSEC 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ G+ GY CP+C A ELP +C++
Sbjct: 248 SLIRMGFPQHTIASVTDQDAKPSFSMSHLDSSSGPGLSLGGYFCPQCHATYTELPVECKV 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARS+HHLFP+ F E L R C CQ L K
Sbjct: 308 CGLTLVSAPHLARSFHHLFPLQAFIESPVENLQGDR-----FCQACQAEL-----KDKSV 357
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
+CP C FC+ECD++IHESLH CP C
Sbjct: 358 FSCPSCHSVFCVECDLFIHESLHCCPCC 385
>gi|363744781|ref|XP_003643123.1| PREDICTED: general transcription factor IIH subunit 2-like [Gallus
gallus]
Length = 395
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 162/389 (41%), Positives = 232/389 (59%), Gaps = 37/389 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVATTAR 80
WE Y +R+WE L+EDESG L+ + + A+ R+R+ + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIDDILFKAK-RKRIYEHHGQVRLGMMRHLYVVVDG 67
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + D +P+R+ K +E FV E+FDQNP+SQ+GL+ K A +T+L G+P+ H
Sbjct: 68 SRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQMGLIVTKSKRAEKMTELSGNPKKH 127
Query: 141 IKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I AL + C G+ SL N+L+L L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 IAALKKAVDMNCQGEPSLYNSLNLAMQTLKHMPGHTSREVLIVFSSLTTCDPANIYDLIK 187
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
K KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+M H PPPA + +
Sbjct: 188 CLKAVKIRVSVIGLSAEVRVCTVLTRETGGTYHVILDETHYKELLMHHVSPPPA-SSTSE 246
Query: 259 ANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCR 307
+LI+MGFPQ + S S+ + + GY CP+C+A+ ELP +C+
Sbjct: 247 CSLIRMGFPQHTTASLSDQDAKPSFSMAQLENNSEPCLTLDGYFCPQCRAKYSELPVECK 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
ICGL LVS+PHLARSYHHLFP+ F E+ PL + C GCQ + +
Sbjct: 307 ICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYQGERYCQGCQAEI----KDQNV 357
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
Y+ C CK FC+ECD+++H+SLH CPGC
Sbjct: 358 YI-CKTCKNAFCVECDVFVHDSLHCCPGC 385
>gi|308805072|ref|XP_003079848.1| basic transcription factor 2, 44kD subunit-related (ISS)
[Ostreococcus tauri]
gi|116058305|emb|CAL53494.1| basic transcription factor 2, 44kD subunit-related (ISS)
[Ostreococcus tauri]
Length = 414
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 172/407 (42%), Positives = 233/407 (57%), Gaps = 24/407 (5%)
Query: 11 GEAEEEEEDEDD--NLNGGLEAWERSYADDRSWEALQEDE-SGFLRPIDNSAFYHAQYRR 67
G E + DE D L AWE+ Y +R+WE L+ED +G LR + A+ RR
Sbjct: 8 GGGSESDSDEIDAERAQASLRAWEKKYQSERAWEDLEEDPLTGRLRVNARAVELRARERR 67
Query: 68 -RLRDRSLVATTAR-----------IQKAA-EMDFRPSRMAVVAKQVEAFVREFFDQNPL 114
++ +L A+ + +AA E DFRP+R++VV AFVREFF+QNPL
Sbjct: 68 AKMASAALRGGAAKGMMRFAYVVVDLSRAANEEDFRPNRLSVVGHCAAAFVREFFNQNPL 127
Query: 115 SQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYG 174
SQ+G++ ++GVA LT+L GSPE+H AL L SGD SLQN L+ + L IPSYG
Sbjct: 128 SQLGIIVARNGVAERLTELSGSPEAHCAALRNALDASGDFSLQNTLNAARTSLKSIPSYG 187
Query: 175 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVAL 234
REVL + S+L+TCDPG++ IQ K +K+R SV+ ++AE+ + + L ++TGG+Y V++
Sbjct: 188 SREVLYIMSSLATCDPGNVWTEIQATKAAKVRVSVVAVAAELHVARRLSEETGGTYGVSM 247
Query: 235 DESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPR 294
+ H +LIM HAPPPP + + L++MGFPQ+ ++ V Y CPR
Sbjct: 248 NADHLDDLIMAHAPPPPLAEDATKSCLVQMGFPQKKHVSKDALI-----VGTRGDYVCPR 302
Query: 295 CKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC 354
C R+ ELP+ C +C L LVSSPHLARSYHHLFP+ F E N S C
Sbjct: 303 CSGRIDELPSQCTVCRLTLVSSPHLARSYHHLFPVPAFKEYAS--RNVSAKESGIVALEC 360
Query: 355 QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRH 401
+ L+S L C C FC CDI+IHE LHNCP C H
Sbjct: 361 -SACLASITDASLASECEHCSNVFCFACDIFIHERLHNCPHCSCATH 406
>gi|156546970|ref|XP_001599241.1| PREDICTED: general transcription factor IIH subunit 2-like [Nasonia
vitripennis]
Length = 404
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/390 (40%), Positives = 230/390 (58%), Gaps = 35/390 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +++WEA++ED+ G L + A+ +R+L R L
Sbjct: 12 WETGY--EKTWEAIKEDDHGMLEASVADIIHKAKRKRQLDRKEGSRLGMMRHLYIILDCS 69
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ D +P+R K +E F+ EFF QNP+SQ+G++ ++ A +TDL G+P+ +
Sbjct: 70 ESMTNQDLKPTRFLCALKLLEDFIDEFFYQNPISQLGIIITRNKRAEKITDLTGNPKKPL 129
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+ L + + +G+ SLQN+L+L L +PS+ +E+L++ +L+TCDPGDI ETIQ
Sbjct: 130 QDLKNLQQTSFTGEPSLQNSLELAAKTLKMLPSHASKEILLIMGSLTTCDPGDIGETIQS 189
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +RCSVIGL+AE+ ICK + +TGG + V LD+ HFKE + H PPPA A
Sbjct: 190 LKSDGVRCSVIGLAAELNICKIMAVNTGGEHGVVLDDKHFKEKLTAHVDPPPAATRLDAA 249
Query: 260 NLIKMGFPQRA-----GEGSISICSCHKEVK------VGVGYTCPRCKARVCELPTDCRI 308
L+KMGFP A E S+++C CH + GY CP+C ++ CELP +CR
Sbjct: 250 -LVKMGFPHHALQASTTELSMAVCMCHADKPDESSRFTNPGYLCPQCLSKHCELPVECRG 308
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYH+LFPI F E + ++C+ CQ++ + K +Y
Sbjct: 309 CGLTLVSAPHLARSYHYLFPIKHFKE-------EQYEGDPASCYACQKTFVELDKK--VY 359
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCES 398
V C KCK+ FCL+C+I+IHESLH CPGC +
Sbjct: 360 V-CEKCKQTFCLDCEIFIHESLHTCPGCAT 388
>gi|116812559|ref|NP_001070896.1| general transcription factor IIH subunit 2 [Rattus norvegicus]
gi|182701382|sp|A0JN27.1|TF2H2_RAT RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=Basic transcription factor 2 44 kDa subunit;
Short=BTF2 p44; AltName: Full=General transcription
factor IIH polypeptide 2; AltName: Full=TFIIH basal
transcription factor complex p44 subunit
gi|116487735|gb|AAI26098.1| General transcription factor IIH, polypeptide 2 [Rattus norvegicus]
Length = 396
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 230/390 (58%), Gaps = 38/390 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA + +
Sbjct: 189 LKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA-SSGSEC 247
Query: 260 NLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVCELPTDC 306
+LI+MGFPQ + S S+ S + +G GY CP+C+A+ CELP +C
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYCELPVEC 306
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
+ICGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 307 KICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGEL----KDQH 357
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 VYV-CTVCRNVFCVDCDVFVHDSLHCCPGC 386
>gi|149059192|gb|EDM10199.1| general transcription factor II H, polypeptide 2 (predicted),
isoform CRA_b [Rattus norvegicus]
gi|149059193|gb|EDM10200.1| general transcription factor II H, polypeptide 2 (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 398
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 230/390 (58%), Gaps = 38/390 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA + +
Sbjct: 189 LKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA-SSGSEC 247
Query: 260 NLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVCELPTDC 306
+LI+MGFPQ + S S+ S + +G GY CP+C+A+ CELP +C
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYCELPVEC 306
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
+ICGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 307 KICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGEL----KDQH 357
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 VYV-CTVCRNVFCVDCDVFVHDSLHCCPGC 386
>gi|170098262|ref|XP_001880350.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644788|gb|EDR09037.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 396
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 156/403 (38%), Positives = 240/403 (59%), Gaps = 48/403 (11%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKA----- 84
WE SY RSW+ +QEDE+G L+ S+ R R R R L+A A I++
Sbjct: 4 TWEASYT--RSWDTVQEDEAGSLQ----SSIEELMARGR-RRRYLLAPAAAIRRTIIRHL 56
Query: 85 ----------AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + ++
Sbjct: 57 VLLLDLSASMMDRDMRPTRFDLMLQYAREFIAEWFDQNPLGQIGVVGMRAGIGERIGEMS 116
Query: 135 GSPESHIKALM--GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
G+P+ +K + KL +G+ SLQNA+++ + ++ +P++ RE+LI++ +L+TCDPG+
Sbjct: 117 GNPQDVLKYIAERHKLEPTGEPSLQNAIEMARSSMNHLPTHSSREILIIFGSLTTCDPGN 176
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
I +TI C ++KIR SV+ L+AEM +C+ LC TGG + VA++E HFK+L+ E PPP
Sbjct: 177 IHDTIDTCVKNKIRISVVALAAEMKVCRELCNKTGGQFGVAMNEGHFKDLLFELIPPPAQ 236
Query: 253 IAEFAI-----------ANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKARVC 300
A + A+L+ MGFP R + + ++C CH E+K G+ CPRC ++VC
Sbjct: 237 HATSRVAGAGTGSSNPAADLMMMGFPTRLPDATAPTLCVCHSELK-SEGFLCPRCLSKVC 295
Query: 301 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 360
++PTDC ICGL +VSSPHLARSYHHLFP+ P+D + + DP S+C C + +
Sbjct: 296 DVPTDCDICGLMIVSSPHLARSYHHLFPVKPYDALPYGDVTDP----SSSCHACSRPFPT 351
Query: 361 S-------GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+ G P CP+C FC +CD+++H+ +H CPGC
Sbjct: 352 AVSASATEGVSPVGRYKCPECHHDFCADCDVFVHDVIHCCPGC 394
>gi|391326656|ref|XP_003737828.1| PREDICTED: general transcription factor IIH subunit 2-like
[Metaseiulus occidentalis]
Length = 390
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 163/398 (40%), Positives = 243/398 (61%), Gaps = 37/398 (9%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATT 78
DED+ +G WE Y +R+WEA++EDESG L+ + + ++ L +++
Sbjct: 3 DEDEQQDG--YRWESEY--ERTWEAIREDESGNLQASVQEIVHKTRRQQLLLQKNVRLGM 58
Query: 79 AR-----IQKAAEM---DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 130
R + +A M D RPSR+ V ++ FV F+D+NP+SQ+ ++ + A +
Sbjct: 59 MRHLYVVLDLSASMNSNDLRPSRIQCVLHLLDDFVDRFYDENPISQLAIIATCNKRAEKI 118
Query: 131 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
+DL G+P H + L + +G+ SLQN++++ +L +P++ REV+I+ +L+TC
Sbjct: 119 SDLSGNPLKHKEGLAKIKDRLPTGEPSLQNSINMAAAVLQHMPAHSSREVVIILGSLTTC 178
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DP DI ETI++ K+ +RCSVIGL+AE+++C+ L + TGGSY + +DE H +EL+ H
Sbjct: 179 DPTDINETIEEAKKLGLRCSVIGLAAEVYVCRRLTEITGGSYHIVVDEDHLRELLANHLL 238
Query: 249 PPPAIAEFAIANLIKMGFP--QRAGEGSISICSCHKE--------VKVGVGYTCPRCKAR 298
PPPA+ +++KMGFP + E + ++C CH E + G G+ CP+CK++
Sbjct: 239 PPPALNNIE-CSMVKMGFPFHKNEQEDTPALCQCHLEAAATESVHITTG-GFLCPQCKSK 296
Query: 299 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 358
CELP +CRICGL LVS+PHLARSYHHLFP+ F E T L D R TCF CQ
Sbjct: 297 YCELPAECRICGLTLVSAPHLARSYHHLFPLDNFKE-THLLKGDTR-----TCFSCQ--- 347
Query: 359 LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
SS +Y C KCK+ FCL+CDI+IH +LH CPGC
Sbjct: 348 -SSVEGQNMYT-CEKCKEEFCLDCDIFIHATLHLCPGC 383
>gi|395825440|ref|XP_003785941.1| PREDICTED: general transcription factor IIH subunit 2-like
[Otolemur garnettii]
Length = 395
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 159/388 (40%), Positives = 229/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 ASLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ + PPPA + +
Sbjct: 189 LKAAKIRVSIIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHYVSPPPASSN-SEC 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C++
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNSEPGLTLGGYFCPQCRAKYCELPVECKV 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEHHGERFCYGCQGDL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CNACQNVFCVDCDVFVHDSLHCCPGC 385
>gi|19075300|ref|NP_587800.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces pombe 972h-]
gi|26400388|sp|O74995.1|TFH47_SCHPO RecName: Full=TFIIH basal transcription factor complex p47 subunit;
AltName: Full=Suppressor of stem-loop protein 1 homolog;
Short=SSL1 homolog
gi|3406059|gb|AAC29144.1| TFIIH subunit p47 [Schizosaccharomyces pombe]
gi|3560161|emb|CAA20673.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces pombe]
Length = 421
Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 167/416 (40%), Positives = 230/416 (55%), Gaps = 31/416 (7%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
+ SE ++ NG + DDN WE Y RSW+ +QED G L +
Sbjct: 13 SESEDEQKNGRVKVRSRKTDDNEG---YTWEGEY--QRSWDIVQEDAEGSLVGVIAGLIQ 67
Query: 62 HAQYRRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQN 112
+ +R LRD R +V E DF R + K FV EFF+QN
Sbjct: 68 SGKRKRLLRDTTPLQRGIIRHMVLVLDLSNSMEERDFHHKRFDLQIKYASEFVLEFFEQN 127
Query: 113 PLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPS 172
P+SQ+ ++ V DG+A+ +TDL G+P+SHI+ L CSG+ SLQNAL++ + LS I S
Sbjct: 128 PISQLSIIGVMDGIAHRITDLHGNPQSHIQKLKSLRDCSGNFSLQNALEMARASLSHIAS 187
Query: 173 YGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--- 229
+G REVLI++ ++ + DPGDI +TI IR ++GL+AE+ ICK +C T S
Sbjct: 188 HGTREVLIIFGSILSSDPGDIFKTIDALVHDSIRVRIVGLAAEVAICKEICNKTNSSTKN 247
Query: 230 -YSVALDESHFKELIMEHAPPPPA-IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVG 287
Y V + E HF+EL++E PP A+ A+L+ MGFP + E S+C+CH G
Sbjct: 248 AYGVVISEQHFRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACHSIPSRG 307
Query: 288 VGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRS 347
G+ CPRCKA+VC LP +C C L L+ S HLARSYHHLFP+ + E+ P N P++
Sbjct: 308 -GFHCPRCKAKVCTLPIECPSCSLVLILSTHLARSYHHLFPLKNWSEI-PWSAN-PKS-- 362
Query: 348 RSTCFGCQQSLLSSGNKP------GLYVACPKCKKHFCLECDIYIHESLHNCPGCE 397
+ CF CQ P + ACP CK HFCL+CD++ HE LH C GC+
Sbjct: 363 -THCFACQLPFPKPPVSPFDESTSSMRYACPSCKNHFCLDCDVFAHEQLHECYGCQ 417
>gi|393246283|gb|EJD53792.1| TFIIH basal transcription factor complex, subunit SSL1 [Auricularia
delicata TFB-10046 SS5]
Length = 464
Score = 297 bits (761), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 164/404 (40%), Positives = 244/404 (60%), Gaps = 44/404 (10%)
Query: 30 AWERSYADDRSWEALQEDESGFLR-PIDNSAFYHAQYRRRLRDRSLVATTARIQKA---- 84
+WE SY RSW+A+QEDE+G L+ +++ + RR SL+A + I++A
Sbjct: 65 SWEESYT--RSWDAVQEDEAGSLQSAVEHLIARGRRRRRVALAASLLAPSDAIRRAIIRH 122
Query: 85 -----------AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
+ D RP+R ++ + V FV E+FDQNPL QIG+V ++ G+A + D+
Sbjct: 123 VIIVLDMSSGMMDRDLRPTRFDLMLEYVREFVTEWFDQNPLGQIGIVGMRAGLAERVCDM 182
Query: 134 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 191
GSP+ +K++ KL +GD SLQNAL+L + +S +PS+ REVL+++ +++T DPG
Sbjct: 183 SGSPQDVLKSISERHKLEPTGDPSLQNALELSRASMSHLPSHSSREVLMIFGSITTVDPG 242
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 251
+I +T+ C E KIR S++ L+AEM IC+ LC+ +GG + VAL+E HFK+++ E PPP
Sbjct: 243 NIHDTLAACLEDKIRISIVALAAEMRICRELCEKSGGVFGVALNEGHFKDVMFELIPPPA 302
Query: 252 --------AIAEFAIANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKARVCEL 302
A A+L+ M FP R E S ++C CH E+K G+ CPRC ARVC++
Sbjct: 303 QRAAAKAAAGGGGTGADLLLMAFPVRLPESSAPTLCVCHLELK-SEGFLCPRCFARVCDV 361
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL---- 358
PTDC +CG+ +VSSPHLARSYHHLFP+ + TP+ + ++ +TC GC +
Sbjct: 362 PTDCDVCGIMIVSSPHLARSYHHLFPVKAY---TPVMTLEGEQQTSATCHGCSMAFQPHK 418
Query: 359 -------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPG 395
+ G P CP+C+ FC ECDI++H+ LH CPG
Sbjct: 419 AAASAGATAEGVSPLGRYRCPECQNDFCNECDIFVHDVLHVCPG 462
>gi|336371442|gb|EGN99781.1| hypothetical protein SERLA73DRAFT_179993 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384207|gb|EGO25355.1| hypothetical protein SERLADRAFT_465378 [Serpula lacrymans var.
lacrymans S7.9]
Length = 450
Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 156/396 (39%), Positives = 232/396 (58%), Gaps = 35/396 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLR---------PIDNSAFYHAQYRRRLRDRSLVATTAR 80
WE SY RSW+ +QEDE+G L+ A RR R L+
Sbjct: 59 TWEASYT--RSWDTVQEDEAGSLQGAVEDWIARGRRRRLLAPAAAIRRTIIRHLILLLDL 116
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D RP+R + + F+ E+FDQNPL QIG+V ++ G+ + ++ G+P+
Sbjct: 117 STSMMDRDMRPTRFDLTLEYAREFITEWFDQNPLGQIGVVGMRAGIGERIGEMSGNPQDV 176
Query: 141 IKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+K++ + L +G+ SLQNA+D+ + +S +P++ RE+L+++ +L+TCDPG+I +T+
Sbjct: 177 LKSIADRHRLEPTGEPSLQNAVDMARSSMSHLPTHSSREILVIFGSLTTCDPGNIHDTLD 236
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP------- 251
C ++KIR SV+ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP
Sbjct: 237 ACVKNKIRISVVALAAEMKICRELCDKTGGQFGVALNEGHFKDLLFELVPPPAQRAMTRA 296
Query: 252 --AIAEFAIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 308
+ A A+L+ MGFP R + S S+C CH E+K G+ CPRC A+VC++PTDC I
Sbjct: 297 AGSGATNPAADLMMMGFPTRLPDTSPASLCVCHSEMK-SEGFLCPRCMAKVCDVPTDCDI 355
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQ--------SLLS 360
CGL +VSSPHLARSYHHLFP+ P+D + L + P + C C + S +
Sbjct: 356 CGLMIVSSPHLARSYHHLFPVKPYDAIGSLA-DTP--DAGLACHACARIFPTTALTSTST 412
Query: 361 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
G P CP+C FC +CD+++H+ +H CPGC
Sbjct: 413 EGMSPLNRYRCPECHNDFCGDCDVFVHDVVHCCPGC 448
>gi|327263012|ref|XP_003216315.1| PREDICTED: general transcription factor IIH subunit 2-like [Anolis
carolinensis]
Length = 406
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 161/388 (41%), Positives = 231/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKASVEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQ+G++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQVGIIITKGKRAEKLTELAGNPRKHI 128
Query: 142 KALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
AL + C+G+ SL NAL+L L +P + REVL+++S+L+TCDP +I + I+
Sbjct: 129 TALKKAVDMTCAGEPSLYNALNLATQTLKHMPGHTSREVLVIFSSLTTCDPSNIYDLIKS 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K KIR SVIGLSAE+ +C L ++TGG+Y V LDESH++EL+M H PPPA + + +
Sbjct: 189 LKMLKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYRELLMHHVSPPPATSG-SES 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ ELP +C++
Sbjct: 248 SLIRMGFPQHTIASLTDQDAKPSFSMAHLENSSEPGLTLGGYFCPQCRAKYSELPVECKV 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F EV PL C GC + G++ +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEV-PL----EEYTGERYCQGCHGGI---GDQ-HVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
+ C +C+ FC++CDI+ HE+LH CPGC
Sbjct: 359 I-CKECQSGFCVDCDIFAHETLHCCPGC 385
>gi|366992932|ref|XP_003676231.1| hypothetical protein NCAS_0D02890 [Naumovozyma castellii CBS 4309]
gi|342302097|emb|CCC69870.1| hypothetical protein NCAS_0D02890 [Naumovozyma castellii CBS 4309]
Length = 485
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 171/421 (40%), Positives = 242/421 (57%), Gaps = 35/421 (8%)
Query: 3 NSERKRLNGEAEEEEEDEDDNL---NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSA 59
N+ R+RL+ +++ + NL NGG AWE RSW+ + DE + + ++
Sbjct: 70 NASRRRLSHNRKKKAASGNKNLLGANGGY-AWEDEIK--RSWDLVTVDEENDMASL-VAS 125
Query: 60 FYHAQYRRRLRD----------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFF 109
A+ +R + R+L+ T + E D RP+R A++ + F+ EFF
Sbjct: 126 IIEARKKRTAKKIVTPYQRGIIRTLILTLDCSEAMVEKDLRPTRHAMMIQYAIDFIHEFF 185
Query: 110 DQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLL 167
DQNP+SQIG+V +++G+A+ ++ + G+P+ HI AL + K +G+ SLQNAL++ +GLL
Sbjct: 186 DQNPISQIGIVIMRNGLAHLVSQVSGNPQDHIDALKAIRKQEPAGNPSLQNALEMARGLL 245
Query: 168 SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG 227
+P++ REVLI++ +LS+ DPGDI +TI + KIR VIGLSA++ ICK LC+ T
Sbjct: 246 LPVPAHCTREVLIIFGSLSSTDPGDIHQTINSLVQEKIRVKVIGLSAQVAICKELCKATN 305
Query: 228 ----GSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKE 283
Y + LDE+HFKEL E P P L+KMGFP R E + S C+CH +
Sbjct: 306 YGDDSFYKILLDETHFKELFDEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPSFCACHSK 365
Query: 284 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 343
+ G GY CP C ++VC LPT C C L L+ S HLARSYHHL P+ F EV P P
Sbjct: 366 LVYG-GYFCPSCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFVEV-PATETFP 423
Query: 344 RNRSRSTCFGCQQSL-LSSGNKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCE 397
CF CQ + K G + C CKK FC++CD++IHE LHNCPGCE
Sbjct: 424 ----TENCFSCQLVFPILKNQKTGKLLTSSRYRCDSCKKDFCIDCDVFIHEILHNCPGCE 479
Query: 398 S 398
S
Sbjct: 480 S 480
>gi|58331891|ref|NP_001011081.1| general transcription factor IIH, polypeptide 2, 44kDa [Xenopus
(Silurana) tropicalis]
gi|54038231|gb|AAH84471.1| general transcription factor IIH, polypeptide 2, 44kDa [Xenopus
(Silurana) tropicalis]
gi|115530769|emb|CAL49300.1| general transcription factor IIH polypeptide 4, 52kDa [Xenopus
(Silurana) tropicalis]
Length = 393
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 160/388 (41%), Positives = 226/388 (58%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS---------LVATTARI 81
WE Y +R+WE L+EDESG L+ + + + +R +R L
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKSTIDEILFKDKRKRIFENRGQVRLGMMRHLYVIVDSS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIGL+ ++ A LT+L G+P H+
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGLIVTRNKRAEKLTELAGNPRQHL 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
AL + C+G+ SL N+L+L L +P + RE+L+++S+L+TCDP +I + I+
Sbjct: 129 NALKKAVDMNCNGEPSLYNSLNLALQTLKHMPGHTSREILVIFSSLTTCDPTNIYDIIKC 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K SKIR SVIGLSAE+ +C L ++TGG Y V LDESH+KEL+M H PPPA + +
Sbjct: 189 LKASKIRVSVIGLSAEVRVCTVLTRETGGVYHVILDESHYKELLMHHVIPPPA-SSTSEC 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ ELP +C++
Sbjct: 248 SLIRMGFPQHTMGCLSDQDAKPSFSMAHLDNTSEPGLTLGGYFCPQCRAKYSELPVECKV 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
C L LVS+PHLARSYHHLFP+ F EV+ C GC L K
Sbjct: 308 CRLTLVSAPHLARSYHHLFPLDAFKEVSL-----EEYEGERYCRGCDGEL-----KDQQV 357
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
CP C+ FC+ECD++IHESLH CPGC
Sbjct: 358 YICPVCQCVFCIECDLFIHESLHCCPGC 385
>gi|395814688|ref|XP_003780876.1| PREDICTED: general transcription factor IIH subunit 2-like
[Otolemur garnettii]
Length = 395
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 158/388 (40%), Positives = 228/388 (58%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 ASLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ + PPPA +
Sbjct: 189 LKAAKIRVSIIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHYVSPPPASLN-SEC 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C++
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNSEPGLTLGGYFCPQCRAKYCELPVECKV 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEHHGERFCYGCQGDL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++++SLH CPGC
Sbjct: 359 V-CNACQNVFCVDCDVFVYDSLHCCPGC 385
>gi|225719554|gb|ACO15623.1| General transcription factor IIH subunit 2 [Caligus clemensi]
Length = 397
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 157/393 (39%), Positives = 231/393 (58%), Gaps = 37/393 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVATTAR 80
WE Y +++WEA+QED G +R A+ R+RL + R L
Sbjct: 10 WETGY--EKTWEAIQEDGDGLIRFSVQDIIDKAR-RKRLAEKTGKVRLGMMRYLYVILDG 66
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D +P+R+ V K +E F+ E+F NP+SQ+G++ ++ + L++LGG+P H
Sbjct: 67 SESMQLQDMKPTRLLSVMKLLEVFIEEYFYLNPISQLGIILTRNKRSEVLSELGGNPRKH 126
Query: 141 IKALM---GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
+ L + C+G+ SLQNALD L +PS+G +E+L ++ +L+TCDP DI TI
Sbjct: 127 TERLRKARDDIVCAGEPSLQNALDTALNYLKPMPSHGSKEILSVFGSLTTCDPSDINATI 186
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA 257
CK + +R S I L+AE+ I K L + TGG ++V LD+ HFKE++ PPP+ +
Sbjct: 187 INCKAANVRASFISLTAEVRIYKELTKVTGGDFNVILDDVHFKEILSSQLEPPPSATQMD 246
Query: 258 IANLIKMGFPQRAGEGS------ISICSCHKE---VKVG-VGYTCPRCKARVCELPTDCR 307
A+LIKMGFP G+ + + +C CH E K+ G+ CP+C A+ CELP +C
Sbjct: 247 -ASLIKMGFPCHTGDDTSDPRSGLGLCMCHLENNPPKISHTGFLCPQCSAKYCELPVECV 305
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
CGL LVS+PHLARSYHHLFP+ PFD+ ++S CF C + L N+
Sbjct: 306 SCGLTLVSAPHLARSYHHLFPLPPFDQQI------SSSQSIRECFACMRGL----NRESK 355
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGCESLR 400
ACP+C K++C++CDI+IHE+LH+CPGC S R
Sbjct: 356 VFACPQCHKNYCIDCDIFIHETLHSCPGCASTR 388
>gi|358059749|dbj|GAA94518.1| hypothetical protein E5Q_01170 [Mixia osmundae IAM 14324]
Length = 458
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 161/432 (37%), Positives = 242/432 (56%), Gaps = 49/432 (11%)
Query: 7 KRLNGEAEEEEEDEDDNLNGGLE-AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQY 65
K G+A + + + NG +WE Y RSW+ ++EDE G L+ ++
Sbjct: 33 KAAQGKANKRRKTANGTANGEANYSWEEDY--KRSWDVVREDERGSLQGAVKDILERSKR 90
Query: 66 RRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ 116
RR +RD R L + + D RP+R+ + K FV E+FDQNP+SQ
Sbjct: 91 RRIMRDTTSIQRGIIRHLYFIIDLSEAMTDRDLRPTRLELTIKYAIEFVNEYFDQNPISQ 150
Query: 117 IGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYG 174
+ ++ KDG+A ++ L G+P H++AL K L SG+ SLQN L++ + L+ +PS+G
Sbjct: 151 MAILVTKDGIAERISPLSGNPVDHVRALESKRKLDPSGEPSLQNVLEMARSGLAHLPSHG 210
Query: 175 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVAL 234
REV+I++ +L+TCDPG+I T++ + ++R +++GLSAEM ICK +C+ T G Y V
Sbjct: 211 SREVVIIFGSLTTCDPGNIHTTMEALVKDRVRVNIVGLSAEMSICKEVCKRTKGVYGVVT 270
Query: 235 DESHFKELIMEHAPPPP----------AIAEFAIANLIKMGFPQRAGEGSISICSCHKEV 284
+E+H+K+L+ E PPP + + A+L++MGFP + ++CSCH +
Sbjct: 271 NEAHYKDLLFELVPPPATHRPEAGPDGSRSNNTGADLMQMGFPSLSSSTFGALCSCHSRL 330
Query: 285 KVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPR 344
K G+ CPRC +R+CE+PT+C IC L +VSSPHLARSY HLFP+ + EV P
Sbjct: 331 KT-TGFNCPRCASRLCEVPTECGICSLTVVSSPHLARSYRHLFPVKNYLEVNN---GQPG 386
Query: 345 NRSR-STCFGCQ-------QSLLSSGNKP------------GLYVACPKCKKHFCLECDI 384
S + CF C S ++G P G Y CP+C HFC++CD+
Sbjct: 387 EDSWPAECFACSLKFSTVAVSAATTGAPPTAASTASRISSTGRY-ECPRCHNHFCIDCDL 445
Query: 385 YIHESLHNCPGC 396
+ HE L CPGC
Sbjct: 446 HAHEVLGVCPGC 457
>gi|426197578|gb|EKV47505.1| hypothetical protein AGABI2DRAFT_204710 [Agaricus bisporus var.
bisporus H97]
Length = 452
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 161/405 (39%), Positives = 241/405 (59%), Gaps = 51/405 (12%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAA---- 85
WE SY RSWE +QEDE+G L+ + R R + L+A A I++
Sbjct: 59 TWEASYT--RSWETVQEDEAGSLQTSVQ------ELMARGRRKRLLAPAAAIRRTIIRHV 110
Query: 86 -----------EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + DL
Sbjct: 111 ILLLDLSSAMLDRDMRPTRFDLMLQYAREFILEWFDQNPLGQIGVVGMRAGLGERIGDLS 170
Query: 135 G---SPE---SHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
G +P+ S+IK KL +G+ SLQNA+++ + +S +P++ RE++I++ +L+TC
Sbjct: 171 GESGNPQEVLSYIKE-RHKLEPTGEPSLQNAIEMAKASMSHLPTHSSREIIIIFGSLTTC 229
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DPG+I ET++ C ++K+R SV+ L+AEM IC+ L TGG + VA++E HFK+L+ E P
Sbjct: 230 DPGNIHETLETCVKNKVRISVVALAAEMKICRELSDKTGGQFGVAMNEGHFKDLLFELVP 289
Query: 249 PPP---------AIAEFAIANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKAR 298
PP A + A+L+ MGFP R E S ++C CH E+K G+ CPRC A+
Sbjct: 290 PPAQRALTRTMGAPSASLSADLMMMGFPTRLPEASAPTLCVCHAELK-SQGFLCPRCLAK 348
Query: 299 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 358
VC++PTDC +CGL +VSSPHLARSYHHLFP+ P+D V L + + C GC +
Sbjct: 349 VCDVPTDCHVCGLMIVSSPHLARSYHHLFPVKPYDAVPNL---EDIPQPSDACHGCAKLF 405
Query: 359 LSSGNKP---GLYVA----CPKCKKHFCLECDIYIHESLHNCPGC 396
++ + P G+ V CP C+ FC +CD+++HE +H CPGC
Sbjct: 406 PTTTSIPIGEGVSVVGRYRCPDCRHDFCSDCDVFVHEVIHCCPGC 450
>gi|50308759|ref|XP_454384.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643519|emb|CAG99471.1| KLLA0E09615p [Kluyveromyces lactis]
Length = 488
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 163/396 (41%), Positives = 229/396 (57%), Gaps = 30/396 (7%)
Query: 24 LNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYR---------RRLRDRSL 74
+NGG AWE RSW+ ++ D+ G + I S + R +R R+L
Sbjct: 94 VNGGY-AWEDDIQ--RSWDLVKVDDEGNIAAIVASIVEARKKRAAEKTVTPYQRGIIRTL 150
Query: 75 VATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ + E D RP+R A+ + F+ E+FDQNP+SQIG+V ++DG+A ++ +
Sbjct: 151 ILVLDCSEAMMEKDLRPNRYAMTVQYAVDFIHEYFDQNPISQIGVVVMRDGLAQLISQVS 210
Query: 135 GSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
G+P+ HI AL + + G++SLQNAL++ +GLL +P++ REVLI++ ALST DPGD
Sbjct: 211 GNPQEHIDALKMLRRQEPKGNASLQNALEMARGLLLHVPAHCTREVLIVFGALSTTDPGD 270
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT----GGSYSVALDESHFKELIMEHAP 248
I +TI IR VIGLSA++ +CK LC+ T Y + L++ HFKEL
Sbjct: 271 IHQTIGSLVHENIRAKVIGLSAQVSVCKELCKQTNYGDNSYYGIILNDHHFKELFTSAVT 330
Query: 249 PPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 308
P P L+KMGFP R E + S C+CH + G GY CP CK +VC LPT C
Sbjct: 331 PLPVSKVNKGFTLVKMGFPTRVFEDTPSFCACHSTLVHG-GYVCPNCKTKVCSLPTVCPS 389
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS-SGNKPGL 367
C L L+ S HLARSYHHL P+ F EV P+ + P + CFGCQ+ + NK G
Sbjct: 390 CDLMLILSTHLARSYHHLMPLKTFQEV-PVSDSFPTD----YCFGCQKRFPTLRNNKTGE 444
Query: 368 YVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C +C + FC++CD++IHE+LHNCPGCES
Sbjct: 445 LLTSSRYRCEECDQDFCIDCDVFIHETLHNCPGCES 480
>gi|351712123|gb|EHB15042.1| General transcription factor IIH subunit 2, partial [Heterocephalus
glaber]
Length = 392
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFENHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+A K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLACTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNSSEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+T + C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEMTL-----EEYKGERFCYGCQGQL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C +C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CAECQNVFCVDCDVFVHDSLHCCPGC 385
>gi|73949709|ref|XP_535266.2| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Canis lupus familiaris]
Length = 395
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 165/388 (42%), Positives = 231/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ PF E+ PL + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDPFQEI-PL---EEHNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|449541165|gb|EMD32151.1| hypothetical protein CERSUDRAFT_119123 [Ceriporiopsis subvermispora
B]
Length = 445
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 157/396 (39%), Positives = 230/396 (58%), Gaps = 35/396 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLR---------PIDNSAFYHAQYRRRLRDRSLVATTAR 80
AWE +Y RSW+ +QEDE+G L+ A RR R L+
Sbjct: 54 AWEAAYT--RSWDTVQEDEAGSLQGAVQELIARGRRRRLLAPASAIRRTIIRHLILVIDL 111
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + ++ G+P+
Sbjct: 112 SSSMMDRDMRPTRFDLMLQYAREFIIEWFDQNPLGQIGIVGMRSGLGERIGEMTGNPQEV 171
Query: 141 IKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+KA+ KL G+ SLQNA+D+ + +S +P + RE+ I++ +L+TCDPG+I +T++
Sbjct: 172 LKAISERHKLEPGGEPSLQNAIDMARSSMSHLPVHSSREITIIFGSLTTCDPGNIHDTLE 231
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA---- 254
C + +IR S++ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP A A
Sbjct: 232 DCIKDRIRISIVALAAEMKICRDLCDKTGGQFGVALNEGHFKDLLFELIPPPVARALART 291
Query: 255 ----EFAIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
A+L+ MGFP R + S +C CH ++K G+ CPRC+A+VC++PTDC IC
Sbjct: 292 GGAPANPAADLMIMGFPTRLPDTSPPGLCVCHSKLK-SEGFLCPRCRAKVCDVPTDCDIC 350
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL---------LS 360
GL +VSSPHLARSYHHLFP+ + V + L D N + S C GC + S
Sbjct: 351 GLMIVSSPHLARSYHHLFPVKAYQAV--ISLEDTPNPAPS-CHGCSTAFREAAPAMANTS 407
Query: 361 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
G P CP C FC +CD+++H+ +H CPGC
Sbjct: 408 DGMSPLGRYRCPDCHNDFCTDCDVFVHDVVHCCPGC 443
>gi|31418653|gb|AAH53382.1| General transcription factor II H, polypeptide 2 [Mus musculus]
Length = 396
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 158/390 (40%), Positives = 228/390 (58%), Gaps = 38/390 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDE+G L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H P PA + +
Sbjct: 189 LKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPLPA-SSSSEC 247
Query: 260 NLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVCELPTDC 306
+LI+MGFPQ + S S+ S + +G GY CP+C+A+ CELP +C
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYCELPVEC 306
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
+ICGL LVS+PHLARSYHHLFP+ F E++ + C+GCQ L
Sbjct: 307 KICGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL----KDQH 357
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 VYV-CTVCQNVFCVDCDVFVHDSLHCCPGC 386
>gi|409080664|gb|EKM81024.1| hypothetical protein AGABI1DRAFT_71744 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 452
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 161/405 (39%), Positives = 240/405 (59%), Gaps = 51/405 (12%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAA---- 85
WE SY RSWE +QEDE+G L+ + R R + L+A A I++
Sbjct: 59 TWEASYT--RSWETVQEDEAGSLQTSVQ------ELMARGRRKRLLAPAAAIRRTIIRHV 110
Query: 86 -----------EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ + DL
Sbjct: 111 ILLLDLSSAMLDRDMRPTRFDLMLQYAREFILEWFDQNPLGQIGVVGMRAGLGERIGDLS 170
Query: 135 G---SPE---SHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
G +P+ S+IK KL +G+ SLQNA+++ + +S +P++ RE++I++ +L+TC
Sbjct: 171 GESGNPQEVLSYIKE-RHKLEPTGEPSLQNAIEMAKASMSHLPTHSSREIIIIFGSLTTC 229
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DPG+I ET++ C ++K+R SV+ L+AEM IC+ L TGG + VA++E HFK+L+ E P
Sbjct: 230 DPGNIHETLETCVKNKVRISVVALAAEMKICRELSDKTGGQFGVAMNEGHFKDLLFELVP 289
Query: 249 PPP---------AIAEFAIANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKAR 298
PP A + A+L+ MGFP R E S ++C CH E+K G+ CPRC A+
Sbjct: 290 PPAQRALTRTMGAPSASLSADLMMMGFPTRLPEASAPTLCVCHAELK-SQGFLCPRCLAK 348
Query: 299 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 358
VC++PTDC +CGL +VSSPHLARSYHHLFP+ P+D V L + + C GC +
Sbjct: 349 VCDVPTDCHVCGLMIVSSPHLARSYHHLFPVKPYDAVPNL---EDIPQPSDACHGCAKLF 405
Query: 359 LSSGNKP---GLYVA----CPKCKKHFCLECDIYIHESLHNCPGC 396
+ + P G+ V CP C+ FC +CD+++HE +H CPGC
Sbjct: 406 PMTTSIPIGEGVSVVGRYRCPDCRHDFCSDCDVFVHEVIHCCPGC 450
>gi|291000862|ref|XP_002682998.1| RNA polymerase II transcription factor TFIIH subunit [Naegleria
gruberi]
gi|284096626|gb|EFC50254.1| RNA polymerase II transcription factor TFIIH subunit [Naegleria
gruberi]
Length = 349
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 145/320 (45%), Positives = 203/320 (63%), Gaps = 16/320 (5%)
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
I ++ D + SR V + F++E+FDQNPLSQ+G++T K+GVA L +L G+ +
Sbjct: 41 IMLPSQHDEKTSRAQSVISTAKEFIKEYFDQNPLSQLGIITTKNGVAKILKELTGNVKQL 100
Query: 141 IKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKC 200
+ L G GD SLQN L+L L QIP+YG +EV+++Y +LS+CDP +I TI++
Sbjct: 101 VSELKKSFG--GDPSLQNVLNLSYDSLHQIPNYGSKEVVVIYCSLSSCDPDNIFSTIKQL 158
Query: 201 KESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP----PPPAIAEF 256
K++ IR S+I L AE+F+CK + + T G+YSV D+ HFKE++M HA + +
Sbjct: 159 KDNNIRVSLISLDAEVFVCKQIAKQTQGTYSVPTDDEHFKEVLMAHAAPPPTTSSSSTKI 218
Query: 257 AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSS 316
++MGFPQR + S+C CHK++ G GY CPRCK++ C+LP +C CGL LVSS
Sbjct: 219 VAPPSMRMGFPQRRAQTLYSMCLCHKKITPG-GYICPRCKSKYCDLPVECSTCGLMLVSS 277
Query: 317 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKK 376
PHLARSYHHLFP+ F + PR C+GCQ+SL + + + CP C
Sbjct: 278 PHLARSYHHLFPVQQFIDY------QPREGEEPYCYGCQKSL---PKESFISLQCPSCSN 328
Query: 377 HFCLECDIYIHESLHNCPGC 396
FC+ECD +IHESLHNCPGC
Sbjct: 329 IFCVECDAFIHESLHNCPGC 348
>gi|147906745|ref|NP_001085329.1| general transcription factor IIH, polypeptide 2, 44kDa [Xenopus
laevis]
gi|49256020|gb|AAH71091.1| MGC81060 protein [Xenopus laevis]
Length = 395
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 161/388 (41%), Positives = 228/388 (58%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS---------LVATTARI 81
WE Y +R+WE L+EDESG L+ + + + +R +R L
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATIDEILFKDKRKRIFENRGQVRLGMMRHLYVIVDSS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIGL+ ++ A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEFFVEEYFDQNPISQIGLIVTRNKRAEKLTELAGNPRQHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
A+ + CSG+ SL N+L+L L +P + RE+L+++S+L+TCDP +I + I+
Sbjct: 129 NAMKKAVDMTCSGEPSLYNSLNLALQTLKHMPGHTSREILVIFSSLTTCDPTNIYDMIKC 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K SK+R SVIGLSAE+ +C L ++TGG Y V LDESH+KEL+M H PPPA + +
Sbjct: 189 LKASKVRVSVIGLSAEVRVCTVLTRETGGVYHVILDESHYKELLMHHVIPPPA-SSSSEC 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+CKA+ ELP +C++
Sbjct: 248 SLIRMGFPQHTMGCLSDQDAKPSFSMAHLDNTSEPGLTLGGYFCPQCKAKYSELPVECKV 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
C L LVS+PHLARSYHHLFP+ F EV + R C GC L +Y
Sbjct: 308 CRLTLVSAPHLARSYHHLFPLDAFKEVRLEEYDGER-----YCRGCDGEL----KDQQVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC+ECD+++HESLH CPGC
Sbjct: 359 V-CTVCQCVFCIECDLFVHESLHCCPGC 385
>gi|392569356|gb|EIW62529.1| TFIIH basal transcription factor complex subunit SSL1 [Trametes
versicolor FP-101664 SS1]
Length = 452
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 157/423 (37%), Positives = 242/423 (57%), Gaps = 46/423 (10%)
Query: 5 ERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLR---------PI 55
+RK+ G+++ +E+ AWE +Y RSW+ +QEDE+G +R
Sbjct: 43 KRKQDKGKSKAKEQGY---------AWEATYV--RSWDTVQEDEAGSIRGSVQDLIARGR 91
Query: 56 DNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLS 115
A RR R LV + D RP+R ++ + FV E+FDQNPL
Sbjct: 92 RRRLLAPAAAIRRTIIRQLVLVLDLSAAMLDRDMRPTRFDLMLQYAREFVTEWFDQNPLG 151
Query: 116 QIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSY 173
QIG+ ++ G+ + ++ G+P+ +KA+ +L +G+ SLQNA+++ + +S +P++
Sbjct: 152 QIGIAGMRGGLGERIGEMSGNPQDVLKAISERHRLEPNGEPSLQNAIEMARSSMSHLPTH 211
Query: 174 GHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVA 233
RE+L+++ +L+TCDPG+I +T+ +C + +IR S++ L+AEM IC+ LC TGG +SV
Sbjct: 212 SSREILVIFGSLTTCDPGNIHDTMDECVKDRIRISIVALAAEMKICRDLCDKTGGQFSVV 271
Query: 234 LDESHFKELIMEHAPPPP---------AIAEFAIANLIKMGFPQRAGEGS-ISICSCHKE 283
++E HFK+L+ E PPP + A+L+ MGFP R + S S+C CH +
Sbjct: 272 MNEGHFKDLLFELIPPPAQRAVARTGSGVTANPAADLMIMGFPMRLPDTSPPSLCVCHSQ 331
Query: 284 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 343
+K G+ CPRC A+VC++PTDC ICGL +VSSPHLARSYHHLFP+ + V L D
Sbjct: 332 MK-SEGFLCPRCLAKVCDVPTDCDICGLMIVSSPHLARSYHHLFPVKAYQAVN--TLEDT 388
Query: 344 RNRSRSTCFGCQQSLLSS----------GNKPGLYVACPKCKKHFCLECDIYIHESLHNC 393
N S+ C GC + + G P CP+C FC +CD+++H+ +H C
Sbjct: 389 LNPSKQ-CHGCSVAFRGTPSVVAGASGEGMSPFGRYRCPECHNDFCTDCDVFVHDVVHCC 447
Query: 394 PGC 396
PGC
Sbjct: 448 PGC 450
>gi|254566501|ref|XP_002490361.1| Component of the core form of RNA polymerase transcription factor
TFIIH [Komagataella pastoris GS115]
gi|238030157|emb|CAY68080.1| Component of the core form of RNA polymerase transcription factor
TFIIH [Komagataella pastoris GS115]
gi|328350755|emb|CCA37155.1| Suppressor of stem-loop protein 1 [Komagataella pastoris CBS 7435]
Length = 447
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/406 (40%), Positives = 235/406 (57%), Gaps = 44/406 (10%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
NGG +WE Y RSW+ +QEDE+G L I + A +R L++ RS+V
Sbjct: 50 NGGY-SWEDEY--HRSWDIVQEDEAGSLEGI-VTGIMEAHKKRFLKNVTPFQRGIIRSMV 105
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
+ +E D RP+R A+ FV FFDQNP+SQ+G+V +++G+A ++++ G
Sbjct: 106 LVIDFSKVMSEKDLRPNRAALTISNAIEFVNNFFDQNPISQLGIVLMRNGIATLVSEVSG 165
Query: 136 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P +H++AL + +L +GD SLQNA ++ +GLL PS+ RE+L+++ AL T DPGDI
Sbjct: 166 NPNNHVEALRSIRRLEPTGDPSLQNAFEMARGLLLHTPSHSTREILMIFGALFTSDPGDI 225
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPP 249
TI + KIR +IGL+A++ ICK +C+ T Y+V L+E HFK+L+++ P
Sbjct: 226 HTTIDSLVKEKIRVKIIGLTAQVAICKEICRRTNYGDDTLYAVILNEGHFKDLLLDAVTP 285
Query: 250 ----PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTD 305
A E LIK GFP R E S C+CH ++ G GY CP CK++VC LPT
Sbjct: 286 LAISKSAQVEMRGFTLIKAGFPTRISEAIPSFCACHSKLIHG-GYICPGCKSKVCMLPTV 344
Query: 306 CRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----------- 354
C C L L+ S HLARSYHHLFP+ F EV PL + + CF C
Sbjct: 345 CPCCNLMLILSTHLARSYHHLFPLKLFQEV-PLA----ESYISTNCFSCLTEFPQGMSES 399
Query: 355 QQSLLSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGC 396
++S + K + + CP C KHFC++CD+++H+ LHNCPGC
Sbjct: 400 ERSNSDNRAKKEFHTSSRYQCPDCNKHFCVDCDVFVHDVLHNCPGC 445
>gi|392578803|gb|EIW71930.1| hypothetical protein TREMEDRAFT_72606 [Tremella mesenterica DSM
1558]
Length = 462
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 165/463 (35%), Positives = 247/463 (53%), Gaps = 70/463 (15%)
Query: 1 MTNSERKRLNGEAEEEEEDEDD--------------NLNG----GLEAWERSYADDRSWE 42
M + + + E EE D+DD ++NG G WE +Y +RSW+
Sbjct: 1 MPDDDNYDPTADLEYEEVDDDDQPRTSTAAKGKHNASVNGQAEKGQAVWEGTY--NRSWD 58
Query: 43 ALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTAR--------IQKAAEMDFRPSRM 94
+QED G L+ +S + +R D L + R + + DFRPSR
Sbjct: 59 VVQEDAEGGLQSAVDSLIARGRRKRAEIDTPLRRSIIRHMFIILDLSESVLDKDFRPSRF 118
Query: 95 AVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSG 152
+ + + ++V E+FDQNPL QIG++ ++D ++ L +GG+P+ + L K L SG
Sbjct: 119 ELTLQYMRSYVVEWFDQNPLGQIGMIIMRDRLSEVLIPMGGNPQEILSVLTDKRKLEPSG 178
Query: 153 DSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSV 209
+ SLQN L + +G +S +PS E+L+++S++ST DP +I + + S++R S+
Sbjct: 179 EPSLQNGLVMAKGGMSHLPSTSSLEILVVFSSISTADPDGPINIHQVLSDLSSSRVRTSI 238
Query: 210 IGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP--------------AIAE 255
I LS E+ IC+ +CQ TGG + VA+DE H +EL+ E PPP A+A
Sbjct: 239 ISLSGEIKICRQICQRTGGKFGVAMDEDHLRELLWETIPPPAQTQSSNPTTLGVRNALAA 298
Query: 256 FA------------IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 303
+ +L+ MGFP R G ++C CH +K G GY CPRC +++C++P
Sbjct: 299 GGNRVDGDGSRPPPVGDLMVMGFPVRLPPGGETLCVCHGLLKKG-GYLCPRCGSKLCDVP 357
Query: 304 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL----- 358
TDC +CGL +VSSPHLARS+ LFP+A +D +T R RS TC+GC +S
Sbjct: 358 TDCEVCGLMVVSSPHLARSFWFLFPVAHYDALTVETTMGDRERSSPTCYGCDRSFKTMDE 417
Query: 359 -----LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+ G P C +C K FC ECD+YIH++LH CPGC
Sbjct: 418 TGSAHVVDGISPTGRYRCARCFKDFCSECDLYIHDTLHTCPGC 460
>gi|346716173|ref|NP_001231240.1| general transcription factor IIH subunit 2 [Sus scrofa]
Length = 395
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 164/388 (42%), Positives = 232/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R + R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVIEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C+G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCNGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+AR CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRARYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
+ C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 I-CSVCQHVFCVDCDVFVHDSLHCCPGC 385
>gi|355693895|gb|AER99488.1| proteinral transcription factor IIH, polypeptide 2, 44kDa [Mustela
putorius furo]
Length = 393
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 228/388 (58%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 10 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 67
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 68 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 127
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 128 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 187
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 188 LKSAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 246
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 247 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKI 306
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L +Y
Sbjct: 307 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEHNGEKFCYGCQGEL----KDQHVY 357
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 V-CAVCQNVFCVDCDVFVHDSLHCCPGC 384
>gi|321470853|gb|EFX81828.1| hypothetical protein DAPPUDRAFT_317251 [Daphnia pulex]
Length = 405
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 172/429 (40%), Positives = 244/429 (56%), Gaps = 64/429 (14%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
A+EEE +E WE Y +++WEA++ED+ G L N A A+ +R+ R
Sbjct: 2 ADEEETNE--------YRWESGY--EKTWEAIKEDDDGLLE--SNVAEIVARAKRK---R 46
Query: 73 SLVATTARIQ-----------KAAE----MDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 117
+ + T IQ A+E D +P+R V K +E FV EFFD NP+SQ+
Sbjct: 47 AALKATGAIQLGMMRHLFVVIDASECMFLQDLKPTRFLCVLKLLELFVHEFFDLNPISQL 106
Query: 118 GLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGH 175
G++T K + ++ L G+ + HI+AL M C G+ SLQN+L+ L +P++
Sbjct: 107 GILTTKVKRSEQVSALAGNQKKHIEALQQMKDTSCEGEPSLQNSLERAMNGLKNMPAHSS 166
Query: 176 REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD 235
REVL+L+ +L+TCDPGDI +TI+ KE+ IR S+IGL+AE+ IC+ + + TGG+Y+V LD
Sbjct: 167 REVLVLFGSLTTCDPGDIQKTIKSLKENNIRVSIIGLAAEVRICREIAKRTGGTYNVLLD 226
Query: 236 ESHFKELIMEHAPPPPAIAEFAIANLIKMGFP-----------QRAGEGSISICSCHKEV 284
+ H KELI+ PPA+A A+L+KMGFP A + + + C CH E
Sbjct: 227 DHHLKELILNQV-QPPAVAGSMEASLVKMGFPGGKPGSSDGASDSAADHAPAYCLCHIEN 285
Query: 285 KVGV------GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPL 338
+ GY CP+C +R CELP +C+ CGL LVS+PHLARSYHHLFPI PF E T +
Sbjct: 286 ETSCLMGNNSGYNCPQCGSRYCELPVECKQCGLTLVSAPHLARSYHHLFPIKPFIERTEV 345
Query: 339 CLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
+ CF C + P +Y C C + CL+CD++I E+LH CPGC
Sbjct: 346 -------PEMTHCFACAKPF--GELDPNVY-ECENCNQIVCLDCDLFIRETLHTCPGCA- 394
Query: 399 LRHSNPIVA 407
S+PI A
Sbjct: 395 ---SDPITA 400
>gi|332233766|ref|XP_003266076.1| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Nomascus leucogenys]
Length = 395
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 163/388 (42%), Positives = 229/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTNASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ L + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI----LLEEHNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|3327882|dbj|BAA31745.1| SSL1 [Schizosaccharomyces pombe]
Length = 392
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 160/388 (41%), Positives = 219/388 (56%), Gaps = 28/388 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTAR 80
WE Y RSW+ +QED G L + + +R LRD R +V
Sbjct: 9 TWEGEY--QRSWDIVQEDAEGSLVGVIAGLIQSGKRKRLLRDTTPLQRGIIRHMVLVLDL 66
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
E DF R + K FV EFF+QNP+SQ+ ++ V DG+A+ +TDL G+P+SH
Sbjct: 67 SNSMEERDFHHKRFDLQIKYASEFVLEFFEQNPISQLSIIGVMDGIAHRITDLHGNPQSH 126
Query: 141 IKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKC 200
I+ L CSG+ SLQNAL++ + LS I S+G REVLI++ ++ + DPGDI +TI
Sbjct: 127 IQKLKSLRDCSGNFSLQNALEMARASLSHIASHGTREVLIIFGSILSSDPGDIFKTIDAL 186
Query: 201 KESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPA-IAE 255
IR ++GL+AE+ ICK +C T S Y V + E HF+EL++E PP A+
Sbjct: 187 VHDSIRVRIVGLAAEVAICKEICNKTNSSTKNAYGVVISEQHFRELLLESTIPPATDSAK 246
Query: 256 FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 315
A+L+ MGFP + E S+C+CH G G+ CPRCKA+VC LP +C C L L+
Sbjct: 247 TTDASLVMMGFPSKVVEQLPSLCACHSIPSRG-GFHCPRCKAKVCTLPIECPSCSLVLIL 305
Query: 316 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP------GLYV 369
S HLARSYHHLFP+ + E+ P N P++ + CF CQ P +
Sbjct: 306 STHLARSYHHLFPLKNWSEI-PWSAN-PKS---THCFACQLPFPKPPVSPFDESTSSMRY 360
Query: 370 ACPKCKKHFCLECDIYIHESLHNCPGCE 397
ACP CK HFCL+CD++ HE LH C GC+
Sbjct: 361 ACPSCKNHFCLDCDVFAHEQLHECYGCQ 388
>gi|301760269|ref|XP_002915938.1| PREDICTED: general transcription factor IIH subunit 2-like
[Ailuropoda melanoleuca]
Length = 395
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 161/388 (41%), Positives = 228/388 (58%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQ+G++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQVGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEHNGEKFCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CAVCQTVFCVDCDVFVHDSLHCCPGC 385
>gi|156387918|ref|XP_001634449.1| predicted protein [Nematostella vectensis]
gi|156221532|gb|EDO42386.1| predicted protein [Nematostella vectensis]
Length = 400
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 153/384 (39%), Positives = 223/384 (58%), Gaps = 26/384 (6%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRR--------RL-RDRSLVATTARI 81
W Y +++WEA++ED+ G L+ + + + ++ +R RL R L
Sbjct: 15 WLSQY--EKTWEAIREDDEGSLQTLVDELVHRSKRQRVAARPGNVRLGMMRHLYIIIDMS 72
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ E D +P+R++ AK +E F+ E+FDQNP+SQ+GL+ K+ A L++L G+P+ HI
Sbjct: 73 KAMEEADLKPNRLSCSAKLLENFITEYFDQNPISQLGLIITKNKRAEKLSELSGNPKLHI 132
Query: 142 KALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+ C G+ SLQNAL L L +P + REVL+L +L++CDPGDI ET++
Sbjct: 133 STIQSACSKPCVGEPSLQNALVLAMQSLKHMPGHVSREVLVLMGSLTSCDPGDITETVKS 192
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +RCS++GL+AEM +CK +C T GSY V LDE HFK+L+MEH PP A +
Sbjct: 193 LKNMNVRCSIVGLAAEMRVCKQICSSTNGSYRVVLDERHFKDLLMEHVIPPTATVRICLV 252
Query: 260 NLIKMGFPQRAGEGSISICSCHKEVK-----VGVGYTCPRCKARVCELPTDCRICGLQLV 314
L + F S+ H + K GY CP+C+++ C+LP +C++CGL LV
Sbjct: 253 -LWYVIFESYCYIHVFSVIRSHMDNKNIKEFTTKGYFCPQCRSKYCDLPVECKVCGLTLV 311
Query: 315 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKC 374
S+PHLARSY HLFP+ + EV N P + CQ ++ K +CP+C
Sbjct: 312 SAPHLARSYQHLFPLQQYTEV-----NVPAQIPGQPPWTCQACQITLTEKTA--CSCPEC 364
Query: 375 KKHFCLECDIYIHESLHNCPGCES 398
+ FCL+CDIYIHESLH CPGC +
Sbjct: 365 RHVFCLDCDIYIHESLHTCPGCTA 388
>gi|367014707|ref|XP_003681853.1| hypothetical protein TDEL_0E03990 [Torulaspora delbrueckii]
gi|359749514|emb|CCE92642.1| hypothetical protein TDEL_0E03990 [Torulaspora delbrueckii]
Length = 464
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 165/393 (41%), Positives = 227/393 (57%), Gaps = 29/393 (7%)
Query: 27 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVAT 77
G AWE RSW+ + DE G + + S + R L++ R+LV
Sbjct: 75 GGYAWEDEIK--RSWDLVTVDEDGDMSALAASLIESRKKRSALKNITPYQRGIIRTLVLV 132
Query: 78 TARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
+ AE D RP+R A++ + FV EFFDQNP+SQ+G+VT+++G+A ++ + G+P
Sbjct: 133 LDCSEAMAEKDLRPNRHAMIVQYAIDFVHEFFDQNPISQLGIVTMRNGLAQLISQISGNP 192
Query: 138 ESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
+ HI AL + K G+ SLQNAL++ +GLL +P++ +EVLI++ +LS+ DPGDI +
Sbjct: 193 QDHIDALKLIRKQEPKGNPSLQNALEMSRGLLLPVPAHCTKEVLIVFGSLSSTDPGDIHQ 252
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPP 251
TI + IR VIGLSA++ ICK LC+ T Y V LDE+H KEL + P P
Sbjct: 253 TINSLVQESIRVKVIGLSAQVAICKELCKATNYGDESYYQVPLDETHCKELFDQAVVPLP 312
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGL 311
L++MGFP R E S + C+CH ++ G GY CP C+++VC LPT C C L
Sbjct: 313 VNKINKGFTLVRMGFPTRIFEDSPTFCACHSQLMYG-GYFCPNCQSKVCSLPTVCPCCDL 371
Query: 312 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGN-KPGLYVA 370
L+ S HLARSYHHL P+ F EV P P + CF CQ + N K G +
Sbjct: 372 MLILSTHLARSYHHLMPLKTFTEV-PSVEEFPTD----NCFSCQIRFPTIKNHKTGELLT 426
Query: 371 -----CPKCKKHFCLECDIYIHESLHNCPGCES 398
C CKK FC++CD+YIHE LHNCPGCES
Sbjct: 427 SSRYRCESCKKDFCIDCDVYIHEILHNCPGCES 459
>gi|170035936|ref|XP_001845822.1| TFIIH basal transcription factor complex p44 subunit [Culex
quinquefasciatus]
gi|167878421|gb|EDS41804.1| TFIIH basal transcription factor complex p44 subunit [Culex
quinquefasciatus]
Length = 411
Score = 290 bits (743), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 229/392 (58%), Gaps = 37/392 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +++WEA++ED+ G + A+ +R+ R L
Sbjct: 12 WETGY--EKTWEAIKEDDDGLVEGSIAEIIQKAKRKRQAMKKGFSKLGMMRHLYVILDCS 69
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K A +T+LGGS HI
Sbjct: 70 EAMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLGVIAMKAKRAEKITELGGSCRKHI 129
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
KA+ + KL +G+ SLQN L+L L +PS+ RE+L++ +L+TCDP DI TI
Sbjct: 130 KAVGNLNKLNLTGEPSLQNGLELALKTLKMVPSHASREILVVMGSLTTCDPTDIHITIDA 189
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA--IAEFA 257
K IRCSV+ LSAE+ +CK LC +TGG Y LD+SHFK+ +++H PP A EF+
Sbjct: 190 LKSEGIRCSVVSLSAEIRVCKFLCTETGGVYGAVLDDSHFKDQLLQHIDPPQAGNQQEFS 249
Query: 258 IANLIKMGFPQ-RAGEGS---ISICSCHKEVK------VGVGYTCPRCKARVCELPTDCR 307
+IKMGFP + EG +++C CH + GY CP+C ++ CELP +C
Sbjct: 250 ---MIKMGFPHGKTEEGKDPPLTMCMCHIDSTDEPSKLTSGGYHCPQCYSKYCELPVECT 306
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
CGL L S+PHLARSYHHLFP+ + E+ P + + C+GCQ+ L +
Sbjct: 307 ACGLTLASAPHLARSYHHLFPVPHYQEL-------PFQQQATNCYGCQK-LFGETTDKTI 358
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
Y C C++ FC++CDI++HE++H+C GC ++
Sbjct: 359 Y-QCATCRQFFCIDCDIFVHETMHSCVGCTTI 389
>gi|118344316|ref|NP_001071980.1| zinc finger protein [Ciona intestinalis]
gi|92081522|dbj|BAE93308.1| zinc finger protein [Ciona intestinalis]
Length = 395
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 165/404 (40%), Positives = 232/404 (57%), Gaps = 48/404 (11%)
Query: 16 EEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRR---RLRD- 71
EE+ ED WE Y +++WEAL+EDE+G L+ + A+ RR R R+
Sbjct: 2 EEQGEDKAYR-----WEGDY--EKTWEALKEDETGSLQASIEAEINKAKKRRLQQRQRNV 54
Query: 72 -----RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGV 126
R L Q + D +P+R V K +E F +FFDQNP+SQ+G V+
Sbjct: 55 RLGMMRHLYVVVDLSQAMCDQDLKPNRAVAVLKALEIFSEKFFDQNPISQLGFVSTCAKR 114
Query: 127 ANCLTDLGGSPESHIKALMGKLG----------CSGDSSLQNALDLVQGLLSQIPSYGHR 176
A L+D+ GS + HIK L LG C+G+ SLQN+L+L L +PS+ +
Sbjct: 115 AEVLSDMSGSLQKHIKVLQD-LGQKIIKTNAKHCTGEPSLQNSLELCAKSLKHMPSHTSK 173
Query: 177 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDE 236
E+L++ +L+TCDPG I +TI + + IRCSVIGLSAE+ ICK+L + T G++ + LDE
Sbjct: 174 EILVVMGSLTTCDPGSIHDTITQIAKQSIRCSVIGLSAEVHICKYLAKSTKGTFGIILDE 233
Query: 237 SHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAG---EGSISICSCHKEVKVGVGYTCP 293
SHF +L+ +H PPP I+ ++LIKMGFP G IS+C VG GY CP
Sbjct: 234 SHFADLLTDHVPPPAEIS--PESSLIKMGFPHHVSPHESGKISLCMSRNTFTVG-GYFCP 290
Query: 294 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV-TPLCLNDPRNRSRSTCF 352
+C+A+ ELP C IC L LVS+PHLARSYHH FP+ F E P+ TC+
Sbjct: 291 QCQAKYSELPVQCVICALTLVSAPHLARSYHHFFPLPMFKEQEVPV--------GSLTCY 342
Query: 353 GCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C + + ++ YV C +C FC++C+ +IHE+LH+CPGC
Sbjct: 343 SCCKPITTAT-----YV-CEQCAISFCMDCNAFIHETLHSCPGC 380
>gi|6681762|ref|NP_001506.1| general transcription factor IIH subunit 2 [Homo sapiens]
gi|17380326|sp|Q13888.1|TF2H2_HUMAN RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=Basic transcription factor 2 44 kDa subunit;
Short=BTF2 p44; AltName: Full=General transcription
factor IIH polypeptide 2; AltName: Full=TFIIH basal
transcription factor complex p44 subunit
gi|496609|emb|CAA82910.1| basic transcripion factor 2, 44 kD subunit [Homo sapiens]
gi|5531809|gb|AAD44479.1| basic transcription factor 2 [Homo sapiens]
gi|146327202|gb|AAI41604.1| General transcription factor IIH, polypeptide 2, 44kDa [synthetic
construct]
gi|147898053|gb|AAI40304.1| General transcription factor IIH, polypeptide 2, 44kDa [synthetic
construct]
gi|208968221|dbj|BAG73949.1| General transcription factor IIH subunit 2 [synthetic construct]
Length = 395
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 164/388 (42%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|348569038|ref|XP_003470305.1| PREDICTED: general transcription factor IIH subunit 2-like [Cavia
porcellus]
Length = 395
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 228/388 (58%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVIDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAIDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIAALSDQDAKPSFSMAHLDSSSEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGQL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CTVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|386780666|ref|NP_001247509.1| general transcription factor IIH subunit 2 [Macaca mulatta]
gi|297675411|ref|XP_002815673.1| PREDICTED: general transcription factor IIH subunit 2 isoform 2
[Pongo abelii]
gi|297675413|ref|XP_002815674.1| PREDICTED: general transcription factor IIH subunit 2 isoform 3
[Pongo abelii]
gi|402871770|ref|XP_003899824.1| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Papio anubis]
gi|402871772|ref|XP_003899825.1| PREDICTED: general transcription factor IIH subunit 2 isoform 2
[Papio anubis]
gi|355691370|gb|EHH26555.1| General transcription factor IIH polypeptide 2 [Macaca mulatta]
gi|355749973|gb|EHH54311.1| General transcription factor IIH polypeptide 2 [Macaca
fascicularis]
gi|380785669|gb|AFE64710.1| general transcription factor IIH subunit 2 [Macaca mulatta]
gi|383411171|gb|AFH28799.1| general transcription factor IIH subunit 2 [Macaca mulatta]
gi|384940950|gb|AFI34080.1| general transcription factor IIH subunit 2 [Macaca mulatta]
Length = 395
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 164/388 (42%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|395325355|gb|EJF57779.1| TFIIH basal transcription factor complex subunit SSL1 [Dichomitus
squalens LYAD-421 SS1]
Length = 448
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 154/394 (39%), Positives = 232/394 (58%), Gaps = 33/394 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLR-PIDN--------SAFYHAQYRRRLRDRSLVATTAR 80
AWE +Y RSW+ +QEDE+G L + N A RR R LV
Sbjct: 59 AWEATYT--RSWDTVQEDEAGRLEGAVQNLIARGRRRRLLAPAAAIRRTIIRHLVLVLDL 116
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D RP+R ++ + FV E+FDQNPL QIG+V ++ G+ + ++ G+P+
Sbjct: 117 SSAMMDRDMRPTRFDLMLQYAREFVTEWFDQNPLGQIGIVGMRGGLGERIGEMSGNPQDV 176
Query: 141 IKALM--GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+KA++ KL +G+ SLQNA+++ + +S +P+ RE+++++ +L+TCDPG+I +T+
Sbjct: 177 LKAILERHKLLPNGEPSLQNAVEMARSSMSHLPTQSSREIVVIFGSLTTCDPGNIHDTLD 236
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP--AIAEF 256
+C + +IR S++ L+AEM +C+ LC TGG + VA++E HFK+L+ E PPP A+A
Sbjct: 237 ECVKDRIRISIVALAAEMKVCRELCDKTGGQFGVAMNEGHFKDLLFELIPPPAQRAVART 296
Query: 257 A---IANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 312
A+L+ MGFP R + S S+C CH ++K G+ CPRC A+VC++PTDC ICGL
Sbjct: 297 GGGTAADLMIMGFPMRLPDTSPPSLCVCHSQMK-SEGFLCPRCLAKVCDVPTDCDICGLM 355
Query: 313 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS----------G 362
+VSSPHLARSYHHLFP+ + VT L D C GC + + G
Sbjct: 356 IVSSPHLARSYHHLFPVKSYSAVTTL---DDTPEPSKRCHGCAVAFKETPSTMLGASGEG 412
Query: 363 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
P C +C FC +CD+++H+ +H CPGC
Sbjct: 413 MSPYGRYRCLECHSDFCADCDVFVHDVVHCCPGC 446
>gi|403214446|emb|CCK68947.1| hypothetical protein KNAG_0B05150 [Kazachstania naganishii CBS
8797]
Length = 469
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 161/394 (40%), Positives = 225/394 (57%), Gaps = 29/394 (7%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
G AWE RSW+ + D+ G + + S + R RD R+L+
Sbjct: 80 SGGYAWEDEIK--RSWDLVTVDDEGDMTSLVASLVEARKKRAAKRDVTPYQRGIIRTLIL 137
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
T + E D RP+R A++ + FV EFFD+NP+SQIG+V +++G+A+ ++ + G+
Sbjct: 138 TLDCSESMTEKDLRPNRHAMMIQYAIDFVHEFFDENPISQIGIVIMRNGLAHLVSSVSGN 197
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P+ H+ AL M K G+ SLQNAL+L +GLL +PS+ REVLI++ +LS+ DPGDI
Sbjct: 198 PQDHLDALKHMRKQEPKGNPSLQNALELARGLLLPVPSHSTREVLIIFGSLSSTDPGDIH 257
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPP 250
+TI + KIR VIGLSA++ +CK LC+ T Y + LDE+HFK+L E P
Sbjct: 258 QTIASLVDEKIRVKVIGLSAQVAVCKELCKLTNFGDDSFYKILLDETHFKDLFDEAVTPL 317
Query: 251 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICG 310
P L+KMGFP R E + CSCH ++ G GY CP C +VC LPT C C
Sbjct: 318 PVNKINKGFTLVKMGFPTRVFESVPTFCSCHSKLIYG-GYFCPNCHNKVCSLPTVCPCCD 376
Query: 311 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQS--LLSSGNKPGLY 368
L L+ S HLARSYHHL P+ F+EV + CF CQ+ +L + L
Sbjct: 377 LTLILSTHLARSYHHLMPLKTFNEV-----DAKETFPTENCFACQRRFPILKNHKSDQLL 431
Query: 369 VA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C C++ FC++CD++IHE LHNCPGCES
Sbjct: 432 TSSRYRCDDCRQDFCIDCDVFIHEVLHNCPGCES 465
>gi|114599829|ref|XP_001158018.1| PREDICTED: uncharacterized protein LOC461830 isoform 9 [Pan
troglodytes]
gi|114599831|ref|XP_001158068.1| PREDICTED: uncharacterized protein LOC461830 isoform 10 [Pan
troglodytes]
gi|114599833|ref|XP_001158128.1| PREDICTED: uncharacterized protein LOC461830 isoform 11 [Pan
troglodytes]
gi|397470434|ref|XP_003806827.1| PREDICTED: general transcription factor IIH subunit 2 [Pan
paniscus]
gi|397470436|ref|XP_003806828.1| PREDICTED: general transcription factor IIH subunit 2 [Pan
paniscus]
gi|397470438|ref|XP_003806829.1| PREDICTED: general transcription factor IIH subunit 2 [Pan
paniscus]
gi|410207616|gb|JAA01027.1| general transcription factor IIH, polypeptide 2C [Pan troglodytes]
gi|410258220|gb|JAA17077.1| general transcription factor IIH, polypeptide 2C [Pan troglodytes]
gi|410299712|gb|JAA28456.1| general transcription factor IIH, polypeptide 2, 44kDa [Pan
troglodytes]
gi|410350531|gb|JAA41869.1| general transcription factor IIH, polypeptide 2C [Pan troglodytes]
gi|410350533|gb|JAA41870.1| general transcription factor IIH, polypeptide 2D [Pan troglodytes]
Length = 395
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/388 (42%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H+
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHV 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|401837686|gb|EJT41582.1| SSL1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 462
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/422 (39%), Positives = 240/422 (56%), Gaps = 36/422 (8%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSA 59
+ +R R +G+ ++++ + NL G G AWE RSW+ ++ D+ G + + S
Sbjct: 47 SQGDRDR-HGQRKKKKRLSNRNLQGSNGGYAWEDEIK--RSWDLVKVDDEGDMASLVASI 103
Query: 60 FYHAQYRRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFD 110
+ R ++ RSL+ T + E D RPSR A++ + FV EFFD
Sbjct: 104 VEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPSRHAMIIQYAIDFVHEFFD 163
Query: 111 QNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLS 168
QNP+SQ+G++ +++G+A ++ + G+P+ HI AL + K G+ SLQNAL++ +GLL
Sbjct: 164 QNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLL 223
Query: 169 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG- 227
+P++ REVLI++ +LST DPGDI +TI KIR V+GLSA++ ICK LC+ T
Sbjct: 224 PVPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNY 283
Query: 228 ---GSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEV 284
Y + LDE+H KEL E P P L+KMGFP R E + + CSCH ++
Sbjct: 284 GDESFYKILLDETHLKELFNEAVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKL 343
Query: 285 KVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPR 344
G GY CP C ++VC LPT C C L L+ S HLARSYHHL P+ F EV P
Sbjct: 344 VYG-GYFCPNCHSKVCSLPTVCPCCDLMLILSTHLARSYHHLMPLKTFAEV-------PT 395
Query: 345 NRSRST--CFGCQQSL-LSSGNKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGC 396
+ + CF CQ + +K G + C CK+ FC++CDI+IHE LHNCPGC
Sbjct: 396 TETFRSEDCFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCVDCDIFIHEILHNCPGC 455
Query: 397 ES 398
ES
Sbjct: 456 ES 457
>gi|109809737|ref|NP_001035955.1| general transcription factor IIH subunit 2-like protein [Homo
sapiens]
gi|148922852|ref|NP_001092198.1| general transcription factor IIH subunit 2-like protein [Homo
sapiens]
gi|74737138|sp|Q6P1K8.1|T2H2L_HUMAN RecName: Full=General transcription factor IIH subunit 2-like
protein; AltName: Full=General transcription factor IIH
polypeptide 2-like protein
gi|40353046|gb|AAH64557.1| GTF2H2D protein [Homo sapiens]
gi|40674450|gb|AAH65021.1| General transcription factor IIH, polypeptide 2D [Homo sapiens]
gi|76779844|gb|AAI05981.1| GTF2H2C protein [Homo sapiens]
gi|189054850|dbj|BAG37691.1| unnamed protein product [Homo sapiens]
gi|219521708|gb|AAI71860.1| General transcription factor IIH, polypeptide 2D [Homo sapiens]
gi|312152202|gb|ADQ32613.1| general transcription factor IIH, polypeptide 2, 44kDa [synthetic
construct]
Length = 395
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 164/388 (42%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|156844855|ref|XP_001645488.1| hypothetical protein Kpol_1004p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156116152|gb|EDO17630.1| hypothetical protein Kpol_1004p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 497
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 229/402 (56%), Gaps = 33/402 (8%)
Query: 21 DDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD------- 71
+D L G G +WE RSW+ + DE G + + ++ A+ +R +
Sbjct: 101 NDKLQGVSGGYSWEDELK--RSWDLVTVDEEGDMTAL-VASLVEARKKRAAQKVVTPYQR 157
Query: 72 ---RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 128
RSL+ + AE D RP+R + + F EFFDQNP+SQ+G+V +K+G+A
Sbjct: 158 GIIRSLILVLDCSEAMAEKDLRPNRNVMSIQYAIDFTHEFFDQNPISQLGIVIMKNGLAQ 217
Query: 129 CLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALS 186
LT + G+P+ HI AL + + G+ SLQNAL++ +GLL +P++ REVLI++ LS
Sbjct: 218 LLTPVSGNPQEHIDALKSIRRQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGGLS 277
Query: 187 TCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKEL 242
+ DPGDI +TIQ E KIR VIGLSA++ IC+ LC+ T + Y + LDE+HFKEL
Sbjct: 278 STDPGDIHQTIQSLVEEKIRVKVIGLSAQVAICQELCKATNYNDDSFYRIILDETHFKEL 337
Query: 243 IMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCEL 302
E P P L+KMGFP R E S S C+CH ++ G GY CP C+ +VC L
Sbjct: 338 FDEAVTPLPVNKINKGFTLVKMGFPTRVFEDSPSFCACHSKLVYG-GYFCPNCQNKVCSL 396
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSS 361
P C C L L+ S HLARSYHHL P+ F EV P N P + CF CQ +
Sbjct: 397 PIVCPCCDLMLILSTHLARSYHHLMPLKTFSEV-PHTENFPTD----NCFSCQIRFPVLR 451
Query: 362 GNKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
K G + C CK+ FC++CD++IHE LHNCPGCE+
Sbjct: 452 NQKTGELLTSSRYRCTDCKQDFCIDCDVFIHEVLHNCPGCEA 493
>gi|157115005|ref|XP_001652513.1| btf [Aedes aegypti]
gi|108877047|gb|EAT41272.1| AAEL007056-PA [Aedes aegypti]
Length = 408
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/409 (38%), Positives = 232/409 (56%), Gaps = 42/409 (10%)
Query: 17 EEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----- 71
EEDE WE Y +++WEA++ED+ G + A+ +R+
Sbjct: 3 EEDEIKEYR-----WETGY--EKTWEAIKEDDDGLVEGSVADIIQKAKRKRQAMKKGFSK 55
Query: 72 ----RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVA 127
R L + D +P+R K +E F+ EFFDQNP+SQ+G++ +K A
Sbjct: 56 LGMMRHLYVLLDCSEAMTVPDLKPTRFLCTLKLLEIFIEEFFDQNPISQLGVIAMKAKRA 115
Query: 128 NCLTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSAL 185
+++LGGS H+KA+ G KL +G+ SLQN LDL L +P++ REVL++ +L
Sbjct: 116 EKISELGGSCRKHVKAVAGLSKLNLTGEPSLQNGLDLALKTLKMVPAHASREVLVVMGSL 175
Query: 186 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIME 245
+TCDP DI TI+ K IRCSV+ LSAE+ +CK LC +TGG Y LD++HFK+ +++
Sbjct: 176 TTCDPTDIHITIEALKAEGIRCSVVSLSAEIRVCKFLCTETGGVYGAVLDDAHFKDQLLQ 235
Query: 246 HAPPPPA--IAEFAIANLIKMGFPQ-RAGEGS---ISICSCHKEVK------VGVGYTCP 293
H PP A EF +LIKMGFP + EG +++C CH + GY CP
Sbjct: 236 HIDPPQAGNQQEF---SLIKMGFPHGKTEEGKDPPLTMCMCHIDSTDEPSKLTSGGYHCP 292
Query: 294 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 353
+C ++ C+LP +C CGL L S+PHLARSYHHLFP+ F E++ S C+G
Sbjct: 293 QCYSKYCDLPVECAACGLTLASAPHLARSYHHLFPVPHFQELS-------FEHQASICYG 345
Query: 354 CQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHS 402
CQ+ S +K C C++ FC++CDI+IHE++H+C GC ++ S
Sbjct: 346 CQKPFTESTDK--TVYQCGTCQQVFCIDCDIFIHETMHSCVGCTTIPSS 392
>gi|158258154|dbj|BAF85050.1| unnamed protein product [Homo sapiens]
Length = 395
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 164/388 (42%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGIMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>gi|365990367|ref|XP_003672013.1| hypothetical protein NDAI_0I02010 [Naumovozyma dairenensis CBS 421]
gi|343770787|emb|CCD26770.1| hypothetical protein NDAI_0I02010 [Naumovozyma dairenensis CBS 421]
Length = 520
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 166/404 (41%), Positives = 230/404 (56%), Gaps = 37/404 (9%)
Query: 21 DDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD------- 71
+ NL G G AWE RSW+ + DE + + ++ A+ +R +
Sbjct: 123 NQNLLGASGGYAWEDEIK--RSWDLVTVDEENDMASL-VASIIEARKKRTAKKIVTPYQR 179
Query: 72 ---RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 128
R+L+ T + AE D RP+R A++ + FV EFFDQNP+SQ+G++ +K+G+A+
Sbjct: 180 GIIRTLILTLDCSESMAEKDLRPNRHAMMIQYAIDFVHEFFDQNPISQLGILVMKNGLAH 239
Query: 129 CLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALS 186
++ +GG+P+ HI L + K +G+ SLQNAL++ +GLL +P++ REVLI++ +LS
Sbjct: 240 LVSQVGGNPQDHIDVLKSIRKQEPAGNPSLQNALEMARGLLLPVPAHCTREVLIIFGSLS 299
Query: 187 TCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKEL 242
+ DPGDI +TI + KIR VIGLSA++ ICK LC T Y + LDE+HFKEL
Sbjct: 300 STDPGDIHQTINSLVQEKIRVKVIGLSAQVAICKELCMATNYGDDSFYKILLDETHFKEL 359
Query: 243 IMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCEL 302
E P P L+KMGFP R E S + CSCH ++ G GY CP C ++VC L
Sbjct: 360 FDEAVTPLPVNKINKGFTLVKMGFPTRIFEDSPTFCSCHSKLVYG-GYFCPSCHSKVCSL 418
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQQSLLS 360
PT C C L L+ S HLARSYHHL P+ F EV P N + T CF CQ +
Sbjct: 419 PTVCPCCDLMLILSTHLARSYHHLMPLKTFLEV-------PSNETFPTENCFSCQLKFPT 471
Query: 361 SGNK------PGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
N+ C C FC++CD++IHE LHNCPGCES
Sbjct: 472 LKNQRNGSLLTSSRYRCSSCHSDFCIDCDVFIHEILHNCPGCES 515
>gi|367002171|ref|XP_003685820.1| hypothetical protein TPHA_0E02960 [Tetrapisispora phaffii CBS 4417]
gi|357524119|emb|CCE63386.1| hypothetical protein TPHA_0E02960 [Tetrapisispora phaffii CBS 4417]
Length = 490
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 165/404 (40%), Positives = 231/404 (57%), Gaps = 37/404 (9%)
Query: 21 DDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD------- 71
+D L G G +WE RSW+ + D+ + + ++ A+ +R +
Sbjct: 94 NDQLAGTSGGYSWEDELK--RSWDLVTVDDENDMASL-VASIVEARKKRSAQKVVTPYQR 150
Query: 72 ---RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 128
RSL+ + +E D RP+R A+ + F++EFFD+NP+SQ+G+V +++G+AN
Sbjct: 151 GIIRSLILILDCSEVMSEKDLRPNRNAMSIQYAIDFIQEFFDENPISQLGIVIMRNGLAN 210
Query: 129 CLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALS 186
L+ +GG+P++HI AL + + G+ SLQNAL++ +GLL +PS+ REVLI++ LS
Sbjct: 211 LLSPIGGNPQAHIDALKSIRREEPKGNPSLQNALEMARGLLLPVPSHCTREVLIVFGGLS 270
Query: 187 TCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKEL 242
+ DPGDI +TIQ KIR VIGLSA++ ICK LC+ T Y V LDE HFKEL
Sbjct: 271 STDPGDIHQTIQSLVNEKIRVKVIGLSAQVAICKELCKATNYDDESFYRVILDEVHFKEL 330
Query: 243 IMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCEL 302
E P P L+KMGFP R E + + C+CH ++ G GY CP C ++VC L
Sbjct: 331 YDEAVTPLPVNKINKAFTLVKMGFPTRVFEENPTFCACHSKLVYG-GYFCPNCNSKVCSL 389
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQQSLLS 360
PT C C L L+ S HLARSYHHL P+ F EV P + + T CF CQ + S
Sbjct: 390 PTVCPCCDLMLILSTHLARSYHHLMPLKTFSEV-------PTSETFETENCFSCQMTFPS 442
Query: 361 SGNK------PGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
NK C C+ FC++CD++IHE LHNCPGCES
Sbjct: 443 LRNKKTGELLTSSRYRCQDCENDFCIDCDLFIHEILHNCPGCES 486
>gi|51013237|gb|AAT92912.1| YLR005W [Saccharomyces cerevisiae]
Length = 461
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 227/395 (57%), Gaps = 30/395 (7%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
NGG AWE RSW+ ++ D+ G + + S + R ++ RSL+
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLI 127
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
T + E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ + G
Sbjct: 128 LTLGCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSG 187
Query: 136 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGDI
Sbjct: 188 NPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDI 247
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 249
+TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL E P
Sbjct: 248 HQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTP 307
Query: 250 PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C C
Sbjct: 308 LPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCC 366
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGLY 368
L L+ S HLARSYHHL P+ F EV + RS CF CQ + +K G
Sbjct: 367 DLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKNHKNGKL 421
Query: 369 VA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 422 LTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|440793605|gb|ELR14784.1| Ssl1like protein [Acanthamoeba castellanii str. Neff]
Length = 360
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 157/388 (40%), Positives = 220/388 (56%), Gaps = 75/388 (19%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS---------------- 73
AWER Y +R+WE +QED +G L D +F H+Q R R +R
Sbjct: 25 AWERDY--ERTWEVVQEDATGAL---DTHSFLHSQQRLRRAEREQLGGGAGGRVVRRGMQ 79
Query: 74 ----LVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 129
LV ++ A D +PSR+AV K VE+F+RE+F+QNP++Q+G+V ++DG A
Sbjct: 80 RHVFLVVDLSQAMDDAH-DMKPSRLAVTLKIVESFIREYFEQNPIAQLGIVIMRDGAAEK 138
Query: 130 LTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 189
L++LGG+P HI L K + +P YG RE+++L++ L+TCD
Sbjct: 139 LSELGGNPARHIGVLKDK--------------------AHVPKYGSREIVVLFAGLATCD 178
Query: 190 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPP 249
P DI TI K K+ IRCS++GLSAE+ IC+ L + T G+Y VAL E H+++L+ H P
Sbjct: 179 PTDIKSTISKLKKDSIRCSIVGLSAEIHICRVLAESTDGTYGVALHEGHYRQLVFAHVSP 238
Query: 250 PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
PPA + ++LI+MGFP R + S CSCHK ++ GY C A+ CELP +C +C
Sbjct: 239 PPAQPQQVASSLIRMGFPTRKRDHFPSFCSCHKSLRRE-GY----CGAKCCELPMECPVC 293
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYV 369
GL LVSS HLARSYHHLFP+ F Q+ S+ + +Y
Sbjct: 294 GLTLVSSSHLARSYHHLFPLPLF-----------------------QAGSSTTSGAEVY- 329
Query: 370 ACPKCKKHFCLECDIYIHESLHNCPGCE 397
ACP+C + FC ECD++ H+ LH C GCE
Sbjct: 330 ACPRCARSFCYECDVFAHDLLHTCAGCE 357
>gi|410948792|ref|XP_003981114.1| PREDICTED: general transcription factor IIH subunit 2 [Felis catus]
Length = 366
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 160/379 (42%), Positives = 225/379 (59%), Gaps = 46/379 (12%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFR 90
WE Y +R+WE L+EDESG L+ + A+ +R V
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQV--------------- 53
Query: 91 PSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--L 148
R+ ++ +E FV E+FDQNP+SQIG++ K A LT+L G+P HI +L +
Sbjct: 54 --RLGML---LEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHITSLKKAVDM 108
Query: 149 GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCS 208
C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+ K +KIR S
Sbjct: 109 TCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKATKIRVS 168
Query: 209 VIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQ 268
VIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + + +LI+MGFPQ
Sbjct: 169 VIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPA-SSGSECSLIRMGFPQ 227
Query: 269 RA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSP 317
+ S S+ + G+ GY CP+C+A+ CELP +C+ICGL LVS+P
Sbjct: 228 HTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAP 287
Query: 318 HLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKH 377
HLARSYHHLFP+ F E+ PL + N R C+GCQ L +YV C C+
Sbjct: 288 HLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYGCQGEL----KDQHVYV-CAVCQNV 337
Query: 378 FCLECDIYIHESLHNCPGC 396
FC++CD+++H+SLH CPGC
Sbjct: 338 FCVDCDVFVHDSLHCCPGC 356
>gi|302916479|ref|XP_003052050.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732989|gb|EEU46337.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 469
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 171/410 (41%), Positives = 230/410 (56%), Gaps = 53/410 (12%)
Query: 30 AWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATT 78
AWE+S R+WE +ED+ G L +A + +R LRD R LV
Sbjct: 48 AWEKS---KRTWETNLPEEDQDGLL---SLTALEAEKRKRLLRDTTPLQRGIIRHLVLVL 101
Query: 79 ARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPE 138
AE D P+R + + AFVREFF+QNP+SQ+G++ ++DGVA ++D+GG+P
Sbjct: 102 DMSFAMAEKDLLPTRYRLTLRYAAAFVREFFEQNPISQLGIIGMRDGVAVRISDVGGNPA 161
Query: 139 SHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMET 196
H++ L G G+ SLQNAL++ +G L PS+G REVLI+Y AL + DPGDI ET
Sbjct: 162 EHLERLKGLEDQDPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSSDPGDIHET 221
Query: 197 IQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPA 252
+ +IR S++GLSA++ IC LC T Y+VA+DE HF+EL + PP
Sbjct: 222 VGNLITDRIRVSIVGLSAQVAICADLCSRTNAGDESQYNVAMDEVHFRELFLAATTPPVT 281
Query: 253 -IAEFAIANLIKMGFPQRA--GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
AE + A+L+ MGFP R G S C+CH GY C RC ARVC LP +C C
Sbjct: 282 RTAEQSTASLLMMGFPSRTLVAGGDTSYCACHNR-PFREGYLCTRCSARVCRLPAECPAC 340
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS-TCFGCQQSLL--------- 359
GL L+ S HLARSYHHLFP+ + EV P N +RS CF CQ
Sbjct: 341 GLTLILSTHLARSYHHLFPLRNWVEV-PWA-----NAARSAACFSCQAPFPEPPKTKAPD 394
Query: 360 ----SSGNKPGLYV------ACPKCKKHFCLECDIYIHESLHNCPGCESL 399
+G KP V AC C++HFC++CD++ HE +HNCPGC+S+
Sbjct: 395 KPKEDAGPKPAKGVSESGRYACEVCRQHFCIDCDVFAHEVIHNCPGCQSI 444
>gi|6323033|ref|NP_013105.1| Ssl1p [Saccharomyces cerevisiae S288c]
gi|417813|sp|Q04673.1|SSL1_YEAST RecName: Full=Suppressor of stem-loop protein 1; AltName:
Full=General transcription and DNA repair factor IIH
subunit SSL1; Short=TFIIH subunit SSL1
gi|2696|emb|CAA78992.1| suppressor of stem-loop [Saccharomyces cerevisiae]
gi|1360294|emb|CAA97527.1| SSL1 [Saccharomyces cerevisiae]
gi|190406046|gb|EDV09313.1| suppressor of stem-loop protein 1 [Saccharomyces cerevisiae
RM11-1a]
gi|256272337|gb|EEU07321.1| Ssl1p [Saccharomyces cerevisiae JAY291]
gi|259147994|emb|CAY81243.1| Ssl1p [Saccharomyces cerevisiae EC1118]
gi|285813427|tpg|DAA09323.1| TPA: Ssl1p [Saccharomyces cerevisiae S288c]
gi|323308054|gb|EGA61307.1| Ssl1p [Saccharomyces cerevisiae FostersO]
gi|323332472|gb|EGA73880.1| Ssl1p [Saccharomyces cerevisiae AWRI796]
gi|365764293|gb|EHN05817.1| Ssl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|384214|prf||1905312A SSL1 gene
Length = 461
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 227/395 (57%), Gaps = 30/395 (7%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
NGG AWE RSW+ ++ D+ G + + S + R ++ RSL+
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLI 127
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
T + E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ + G
Sbjct: 128 LTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSG 187
Query: 136 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGDI
Sbjct: 188 NPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDI 247
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 249
+TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL E P
Sbjct: 248 HQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTP 307
Query: 250 PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C C
Sbjct: 308 LPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCC 366
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGLY 368
L L+ S HLARSYHHL P+ F EV + RS CF CQ + +K G
Sbjct: 367 DLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKNHKNGKL 421
Query: 369 VA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 422 LTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|392297981|gb|EIW09080.1| Ssl1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 461
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 227/395 (57%), Gaps = 30/395 (7%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
NGG AWE RSW+ ++ D+ G + + S + R ++ RSL+
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLI 127
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
T + E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ + G
Sbjct: 128 LTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSG 187
Query: 136 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGDI
Sbjct: 188 NPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDI 247
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 249
+TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL E P
Sbjct: 248 HQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTP 307
Query: 250 PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C C
Sbjct: 308 LPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCC 366
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGLY 368
L L+ S HLARSYHHL P+ F EV + RS CF CQ + +K G
Sbjct: 367 DLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKNHKNGKL 421
Query: 369 VA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 422 LTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|323336560|gb|EGA77826.1| Ssl1p [Saccharomyces cerevisiae Vin13]
Length = 461
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 227/395 (57%), Gaps = 30/395 (7%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
NGG AWE RSW+ ++ D+ G + + S + R ++ RSL+
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLI 127
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
T + E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ + G
Sbjct: 128 LTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSG 187
Query: 136 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGDI
Sbjct: 188 NPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDI 247
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 249
+TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL E P
Sbjct: 248 HQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTP 307
Query: 250 PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C C
Sbjct: 308 LPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCC 366
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGLY 368
L L+ S HLARSYHHL P+ F EV + RS CF CQ + +K G
Sbjct: 367 DLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKNHKNGKL 421
Query: 369 VA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 422 LTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|349579731|dbj|GAA24892.1| K7_Ssl1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 461
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 227/395 (57%), Gaps = 30/395 (7%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
NGG AWE RSW+ ++ D+ G + + S + R ++ RSL+
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLI 127
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
T + E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ + G
Sbjct: 128 LTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSG 187
Query: 136 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGDI
Sbjct: 188 NPQGHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDI 247
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 249
+TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL E P
Sbjct: 248 HQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTP 307
Query: 250 PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C C
Sbjct: 308 LPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCC 366
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGLY 368
L L+ S HLARSYHHL P+ F EV + RS CF CQ + +K G
Sbjct: 367 DLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKNHKNGKL 421
Query: 369 VA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 422 LTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|410083393|ref|XP_003959274.1| hypothetical protein KAFR_0J00710 [Kazachstania africana CBS 2517]
gi|372465865|emb|CCF60139.1| hypothetical protein KAFR_0J00710 [Kazachstania africana CBS 2517]
Length = 469
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 161/395 (40%), Positives = 227/395 (57%), Gaps = 33/395 (8%)
Query: 27 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVAT 77
G AWE RSW+ + DE G + + S + R R R+L+ T
Sbjct: 80 GGYAWEDEIK--RSWDLVTLDEDGDMVSLVASLIEARKKRAAKRSVTPFQRGIIRNLILT 137
Query: 78 TARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
+ E D RPSR A++ + FV EFFDQNP+SQIG+V +++G+A ++ + G+P
Sbjct: 138 LDCSESMLEKDLRPSRHAMMIQYAIDFVHEFFDQNPISQIGIVIMRNGLAQLVSQVSGNP 197
Query: 138 ESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
+ HI AL + K G+ SLQNAL++ +GLL +PS+ REVLI++ +LS+ DPGD+ +
Sbjct: 198 QDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPSHCTREVLIIFGSLSSTDPGDVHQ 257
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPP 251
TI +IR VIGLSA++ ICK LC+ T Y++ LDE+HFKEL E P P
Sbjct: 258 TINSLVRERIRTRVIGLSAQVAICKELCKQTNYGDESYYNILLDETHFKELFDEAVTPLP 317
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGL 311
L+KMGFP R E + + CSCH ++ G GY CP C +++C LPT C C L
Sbjct: 318 VNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLIYG-GYFCPNCHSKICSLPTVCPCCDL 376
Query: 312 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQQSL-LSSGNKPGLY 368
L+ S HLARSYHHL P+ F EV P + + T C+ CQ+ + +K G
Sbjct: 377 MLILSTHLARSYHHLMPLKTFKEV-------PSDETFKTENCYSCQKKFPILKNHKTGNL 429
Query: 369 VA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C C++ FC++CD++IHE LHNCPGCE+
Sbjct: 430 LTSSRYRCSDCQEDFCIDCDLFIHEVLHNCPGCEA 464
>gi|126314992|ref|XP_001364912.1| PREDICTED: general transcription factor IIH subunit 2-like
[Monodelphis domestica]
Length = 395
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 228/396 (57%), Gaps = 38/396 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVQLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L L L +P + REVL+L+S+L+TCDP +I + I+
Sbjct: 129 ASLKKAVDMTCHGEPSLYNSLSLAMQTLKHMPGHTSREVLVLFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGAYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ ELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSTEPGLTLGGYFCPQCRAKYSELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F EV+ N R C GC L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEVSLEEYNGER-----FCHGC----LGELKDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNP 404
+ C C+ FC++CD++IHESLH CPGC H NP
Sbjct: 359 I-CTVCQNVFCVDCDLFIHESLHCCPGC---IHKNP 390
>gi|151941173|gb|EDN59551.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
Length = 461
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 226/395 (57%), Gaps = 30/395 (7%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
NGG AWE RSW+ ++ D+ G + + S + R ++ RSL+
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLI 127
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
T + E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ + G
Sbjct: 128 LTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSG 187
Query: 136 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGDI
Sbjct: 188 NPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDI 247
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 249
+TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL E P
Sbjct: 248 HQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTP 307
Query: 250 PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C C
Sbjct: 308 LPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCC 366
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGLY 368
L L+ S HLARSYHHL P+ F EV P P CF CQ + +K G
Sbjct: 367 DLMLILSTHLARSYHHLMPLKTFAEV-PTTEKFP----SEDCFSCQSRFPILKNHKNGKL 421
Query: 369 VA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 422 LTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|323303957|gb|EGA57737.1| Ssl1p [Saccharomyces cerevisiae FostersB]
Length = 461
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 163/396 (41%), Positives = 229/396 (57%), Gaps = 32/396 (8%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSL 74
NGG AWE RSW+ ++ D+ G + + ++ A+ +R + RSL
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASL-VASIXEARKKRTAKKNITPYQRGIIRSL 126
Query: 75 VATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ T + E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ +
Sbjct: 127 ILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVS 186
Query: 135 GSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGD
Sbjct: 187 GNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGD 246
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAP 248
I +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL E
Sbjct: 247 IHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVT 306
Query: 249 PPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 308
P P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C
Sbjct: 307 PLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPC 365
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGL 367
C L L+ S HLARSYHHL P+ F EV + RS CF CQ + +K G
Sbjct: 366 CDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKNHKNGK 420
Query: 368 YVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 421 LLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>gi|402224004|gb|EJU04067.1| TFIIH basal transcription factor complex subunit SSL1 [Dacryopinax
sp. DJM-731 SS1]
Length = 440
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 152/403 (37%), Positives = 227/403 (56%), Gaps = 42/403 (10%)
Query: 27 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRR-----------RLRDRSLV 75
G AWE SY RSW+ +QEDE+G L+ ++ RR R R ++
Sbjct: 46 GAYAWEASYK--RSWDTVQEDEAGSLQAAVQDLVARSKRRRCACSWGDAPIRRTIIRHMM 103
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
+ D RPSR + FV E+FDQNPL Q+G+V +++GV + D+ G
Sbjct: 104 FLVDLSTAMMDRDMRPSRFDLTLSYAREFVSEWFDQNPLGQMGVVGMRNGVGERIGDMSG 163
Query: 136 SPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P+ +K + K L +G+ SLQN++++ + ++ +P++ RE+LI++ +L+T DPG++
Sbjct: 164 NPQDVLKCFLDKTLLEPAGEPSLQNSIEMARASMNHLPTHSSREILIIFGSLTTVDPGNL 223
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP--- 250
++T+ C +IR S++ LSAEM +C+ +C+ TGG + VAL+E H+K+L+ E PPP
Sbjct: 224 LDTVDACVRDQIRISIVALSAEMKVCRDMCERTGGVFGVALNEGHYKDLLFELVPPPADK 283
Query: 251 ------PAIAEFAIANLIKMGFPQR-AGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 303
A A + L++MGFP R S+C CH ++ GY CPRC ++VC++P
Sbjct: 284 SPVSRLAAQAGEGQSELMQMGFPTRLPATAPPSLCVCHSRLR-SEGYICPRCNSKVCDVP 342
Query: 304 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGN 363
TDC ICGL +VSSPHLARSYHHLFP + V L + S C C ++
Sbjct: 343 TDCDICGLMIVSSPHLARSYHHLFPAPAYKAVLEL-----DGKEASACHACSLPFPTTAR 397
Query: 364 KP----------GLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
P G Y CPKCK F ECD+++H+ LH CPGC
Sbjct: 398 APLQTEEGMSPHGRY-RCPKCKHDFDAECDLFVHDVLHVCPGC 439
>gi|158293200|ref|XP_314533.4| AGAP010559-PA [Anopheles gambiae str. PEST]
gi|157016844|gb|EAA09916.5| AGAP010559-PA [Anopheles gambiae str. PEST]
Length = 421
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 152/396 (38%), Positives = 232/396 (58%), Gaps = 35/396 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS---------LVATTARI 81
WE Y +++WEA++ED+ G + + A+ +R+ R L
Sbjct: 12 WETGY--EKTWEAIKEDDDGLIEGSVSDIIQKAKRKRQAMKRGFSKLGMMRHLYVLLDCS 69
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ D +P+R K +E F+ EFFDQNP+SQ+G++ +K A +++LGG+ HI
Sbjct: 70 EAMTVPDLKPTRFICSLKLLELFIEEFFDQNPISQLGVIAMKAKRAEKISELGGTSRKHI 129
Query: 142 KA---LMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
KA L + G+ SLQN L+L L IP + RE+L++ +L++CDP D+ TI+
Sbjct: 130 KAVHALTNGVPLVGEPSLQNGLELALKTLRMIPQHASREILVIMGSLTSCDPNDVHLTIE 189
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA--IAEF 256
K +RCSV+ LSAE+ ICK LC +TGG + LD++H+K+ +++H PP A EF
Sbjct: 190 NLKTEGVRCSVLSLSAEIRICKFLCTETGGLFGAVLDDAHYKDQLLQHIDPPQAGNQQEF 249
Query: 257 AIANLIKMGFP----QRAGEGSISICSCHKEVK------VGVGYTCPRCKARVCELPTDC 306
+ LIKMGFP + E +++C CH + GY CP+C ++ CELP +C
Sbjct: 250 S---LIKMGFPHGKTESGKEPPLTMCMCHIDSVDEPAKLTSGGYHCPQCYSKYCELPVEC 306
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPL---CLNDPRNRSRSTCFGCQQSLLSSGN 363
CGL L S+PHLARSYHHLFP+ F+E+ PL + +PR+ + C+ CQ++L S +
Sbjct: 307 SACGLTLASAPHLARSYHHLFPVPHFNEL-PLEQVQVQEPRDPPVTNCYACQKTLASGTD 365
Query: 364 KPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
K + C CK+ FC++CDI+IHE+LH+C GC ++
Sbjct: 366 K--MVYECDACKQVFCIDCDIFIHETLHSCVGCTTI 399
>gi|393217828|gb|EJD03317.1| TFIIH basal transcription factor complex, subunit SSL1 [Fomitiporia
mediterranea MF3/22]
Length = 481
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 153/430 (35%), Positives = 230/430 (53%), Gaps = 68/430 (15%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDN---------SAFYHAQYRRRLRDRSLVATTAR 80
AWE +Y RSW+ ++EDESG L+ N + + RR R L+
Sbjct: 55 AWEATYT--RSWDTVREDESGSLQGAVNELLARGRRRRLLFPSTAIRRTIIRHLILVIDL 112
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D RP+R + AF+ E+FDQNPL QIG++ ++ G+A + ++ +P
Sbjct: 113 SASMLDRDMRPTRFDLALSTARAFIVEWFDQNPLGQIGVIGMRSGIAERIGEMSSNPHDV 172
Query: 141 IKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+K++ + L +G+ SLQNA+++ + +S +P++ RE++IL+ +L+T DPG+I ET+
Sbjct: 173 LKSIQDRHRLEPAGEPSLQNAVEMARSTMSHLPTHSSREIVILFGSLTTVDPGNIHETLD 232
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA---- 254
C +IR +++ L+AEM IC+ +C TGG + V+L+E HF++L+ E PPP A
Sbjct: 233 ACIRDRIRINLVALAAEMKICRDMCGKTGGQFGVSLNEGHFRDLLFELIPPPAQRALSRA 292
Query: 255 ------------EFAIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCE 301
A+L+ MGFP R E S ++C CH E+K G+ CPRC A+VC+
Sbjct: 293 AGAGASASAGSGGNPAADLMMMGFPTRLPEASPPALCVCHSELK-SAGFVCPRCAAKVCD 351
Query: 302 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC------- 354
+PTDC +CGL +VSSPHLARSYHHLFP+ P+ VT LN + C GC
Sbjct: 352 VPTDCDVCGLMIVSSPHLARSYHHLFPVKPYQAVTDTELNS--TTASRACHGCASPFPPV 409
Query: 355 ----------------------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYI 386
++ S G P CP CK FC ECD+++
Sbjct: 410 SSGTSTSTNPVTGSAAGTGAAEGASAAGTSTVTSDGMSPLGRYRCPDCKNDFCTECDVFV 469
Query: 387 HESLHNCPGC 396
H+ +H CPGC
Sbjct: 470 HDVVHCCPGC 479
>gi|255711256|ref|XP_002551911.1| KLTH0B02794p [Lachancea thermotolerans]
gi|238933289|emb|CAR21473.1| KLTH0B02794p [Lachancea thermotolerans CBS 6340]
Length = 470
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 163/400 (40%), Positives = 225/400 (56%), Gaps = 40/400 (10%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD-----RSLVATTA 79
NGG AWE RSW+ ++ D+ G + + +S + R ++ R ++ T
Sbjct: 80 NGGY-AWEEDI--QRSWDLVKVDDEGNMAALVSSIIEARKKRASNKNLTPFQRGIIRTMV 136
Query: 80 RI----QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
+ E D RP+R A+ + FV EFFDQNP+SQIG+V +++ +A ++ + G
Sbjct: 137 LVLDCSDAMMEKDLRPNRYAMTIQYAINFVHEFFDQNPISQIGIVCMRNDLAQLVSQVSG 196
Query: 136 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P+ HI AL + K G+SSLQNAL++ +GLL +P++ REVLI++ ALS+ DPGDI
Sbjct: 197 NPQDHIDALKAIRKQEPKGNSSLQNALEMARGLLLHVPAHCTREVLIIFGALSSTDPGDI 256
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDT----GGSYSVALDESHFKELIMEHAPP 249
+TI + +IR VIGLSA++ ICK LC+ T Y V L+E HFK+L E P
Sbjct: 257 HQTIASLVQERIRVRVIGLSAQVAICKELCKQTNYGDNSFYGVILNEVHFKDLFAEAVTP 316
Query: 250 PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
P L+KMGFP R E S C+CH ++ G GY CP CK++VC LPT C C
Sbjct: 317 LPVNKINKGFTLVKMGFPTRVYEDMPSFCTCHSKLMYG-GYFCPNCKSKVCSLPTVCPCC 375
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ-----------QSL 358
L L+ S HLARSYHHL P+ F EV + TC+ CQ Q L
Sbjct: 376 DLMLILSTHLARSYHHLMPLKTFQEV-----DVAETFPTDTCYSCQKRFPRLKNQKTQEL 430
Query: 359 LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
L+S C C + FC++CD++IHE LHNCPGCES
Sbjct: 431 LTSSR-----YRCADCHQDFCIDCDVFIHEILHNCPGCES 465
>gi|126320570|ref|XP_001362699.1| PREDICTED: general transcription factor IIH subunit 2-like
[Monodelphis domestica]
Length = 395
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 228/396 (57%), Gaps = 38/396 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDAS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P+ H+
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPKKHV 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L L L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 ASLKKAVDMTCHGEPSLYNSLSLAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKS 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGVYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ ELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSTEPGLTLGGYFCPQCRAKYSELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F EV+ N R C GC L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEVSLEEYNGER-----FCQGC----LGELKDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNP 404
+ C C+ FC++CD++IHESLH CPGC H NP
Sbjct: 359 I-CTVCQNVFCVDCDLFIHESLHCCPGC---IHKNP 390
>gi|452824299|gb|EME31303.1| transcription initiation factor TFIIH subunit H2 isoform 1
[Galdieria sulphuraria]
Length = 398
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 158/395 (40%), Positives = 235/395 (59%), Gaps = 28/395 (7%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVAT 77
L +WE+ RSWE L+EDE+G ++ D S+F ++ +R+ ++ R LV
Sbjct: 12 LYSWEQDIV--RSWETLEEDETGKIK--DLSSFERSRVKRKRKNTQQNVRRGLIRFLVLI 67
Query: 78 TARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
++A E D +PSR V + F+ +F++NP+SQ+ +V ++DGVA L+ +G +P
Sbjct: 68 LDLSREAKETDVKPSRGEVCLSCAQKFLYSYFNENPISQLAVVVLRDGVAEKLSSMGSNP 127
Query: 138 ESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
H + + + G G+ SLQN LD+ LL IPSYG REVLILY+++S+CDPGDI +
Sbjct: 128 RQHSEVVKNANQKGFYGNCSLQNGLDVALSLLHSIPSYGSREVLILYNSISSCDPGDIRQ 187
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAE 255
TI+K ++ +IRC+VIG++AE++I K+L T GSY V ++ESH EL+ + P I
Sbjct: 188 TIEKLEKERIRCNVIGMAAELYILKYLAARTHGSYFVCMNESHLLELLEDFVVPSALIEN 247
Query: 256 FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 315
L++MGFP +C K ++ V + CPRC+ E+P +C +CGL LVS
Sbjct: 248 NTKTALVRMGFPTLKAYKEPKVCLNDKVLRNQV-FVCPRCECCYGEIPIECVLCGLILVS 306
Query: 316 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR---STCFGCQQSLLSSGNKPGLYVACP 372
S LARSYHHLFP+A F E+ D +S + CF C+ + G++ Y CP
Sbjct: 307 SSQLARSYHHLFPVANFHELE----EDKYKQSHFQPNYCFACKGTFPFEGSE---YFVCP 359
Query: 373 KCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVA 407
C+ FC CDI+IH+ L+NCPGCE +R N I +
Sbjct: 360 NCQNIFCGICDIFIHDGLNNCPGCE-IRPENRIAS 393
>gi|390459877|ref|XP_002744933.2| PREDICTED: general transcription factor IIH subunit 2 isoform 1
[Callithrix jacchus]
Length = 404
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 230/397 (57%), Gaps = 44/397 (11%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P H+
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHV 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 C---------GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLL 359
C GL LVS+PHLARSYHHLFP+ PF E+ L + N R C+GCQ L
Sbjct: 308 CGKKPSIHYSGLTLVSAPHLARSYHHLFPLDPFQEI----LLEEYNGER-FCYGCQGEL- 361
Query: 360 SSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 362 ---KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 394
>gi|225543398|ref|NP_071294.3| general transcription factor IIH subunit 2 [Mus musculus]
gi|18203119|sp|Q9JIB4.1|TF2H2_MOUSE RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=Basic transcription factor 2 44 kDa subunit;
Short=BTF2 p44; AltName: Full=General transcription
factor IIH polypeptide 2; AltName: Full=TFIIH basal
transcription factor complex p44 subunit
gi|9082152|gb|AAF82753.1| general transcription factor IIH polypeptide 2 [Mus musculus]
Length = 396
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 159/390 (40%), Positives = 228/390 (58%), Gaps = 38/390 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDE+G L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA +
Sbjct: 189 LKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVCELPTDC 306
+LI+MGFPQ + S S+ S + +G GY CP+C+A+ CELP +C
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYCELPVEC 306
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
+ICGL LVS+PHLARSYHHLFP+ F E++ + C+GCQ L
Sbjct: 307 KICGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL----KDQH 357
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 VYV-CTVCQNVFCVDCDVFVHDSLHCCPGC 386
>gi|16740713|gb|AAH16231.1| Gtf2h2 protein [Mus musculus]
gi|148668487|gb|EDL00806.1| general transcription factor II H, polypeptide 2, isoform CRA_a
[Mus musculus]
Length = 398
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 159/390 (40%), Positives = 228/390 (58%), Gaps = 38/390 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDE+G L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA +
Sbjct: 189 LKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVCELPTDC 306
+LI+MGFPQ + S S+ S + +G GY CP+C+A+ CELP +C
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYCELPVEC 306
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
+ICGL LVS+PHLARSYHHLFP+ F E++ + C+GCQ L
Sbjct: 307 KICGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL----KDQH 357
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 VYV-CTVCQNVFCVDCDVFVHDSLHCCPGC 386
>gi|410925308|ref|XP_003976123.1| PREDICTED: general transcription factor IIH subunit 2-like
[Takifugu rubripes]
Length = 392
Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 161/388 (41%), Positives = 219/388 (56%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + ++ RR + R L
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEEILFQSKKRRLIESHGQVRLGMMRHLFVVIDCS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +EAFV E+FDQNP+SQ+GL+T K+ A LTDL G+P+ H
Sbjct: 69 RSMEDQDLKPNRLTSTLKLLEAFVDEYFDQNPISQMGLITTKNKRAEKLTDLSGNPKKHC 128
Query: 142 KALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
AL + C G+ SL N L L L +P + RE+LI+ S+L+TCDP +I E I+
Sbjct: 129 AALKKAVDTVCVGEPSLYNCLSLAVQTLRHMPGHTSRELLIILSSLTTCDPANIYELIET 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K K+R SVIGLSAE+ +C L ++TGGSY V LDESHFKEL+M H PPPA + +
Sbjct: 189 LKTLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPPPA-SSSSEC 247
Query: 260 NLIKMGFPQRA------GEGSISICSCHKEVKVGV-----GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S H + G GY CP+C A+ ELP +C++
Sbjct: 248 SLIRMGFPQHTVASLTDQDAKPSFSMAHLDSSSGPDLSLGGYFCPQCHAKYTELPVECKV 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LV +PHLARS+HHLFP+ F E L R +C C L K
Sbjct: 308 CGLTLVLAPHLARSFHHLFPLQVFTESPADDLQTER-----SCQACHGEL-----KDKSV 357
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
+CP C FC++C ++IH+SLH CP C
Sbjct: 358 FSCPSCLSVFCVDCHLFIHDSLHCCPCC 385
>gi|345304797|ref|XP_001512459.2| PREDICTED: general transcription factor IIH subunit 2-like
[Ornithorhynchus anatinus]
Length = 395
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 163/398 (40%), Positives = 233/398 (58%), Gaps = 42/398 (10%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRR-----------RLRDRSLVATTA 79
WE Y +R+WE L+EDESG L+ + A+ +R +R +V +
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRICEHHGQVRLGMMRHLYVVVDGS 68
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
R + + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P
Sbjct: 69 RTME--DQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRK 126
Query: 140 HIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
H AL + C G+ SL N+L L L +P + REVLI++S+L+TCDP +I + I
Sbjct: 127 HTTALKKAVDMTCLGEPSLYNSLSLAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLI 186
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA 257
+ K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL++ H PPPA +
Sbjct: 187 KSLKTAKIRVSIIGLSAEVRVCTVLARETGGTYHVILDESHYKELLIHHVSPPPASSSSE 246
Query: 258 IANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDC 306
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C
Sbjct: 247 -CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSSEPGLTLGGYFCPQCRAKYCELPVEC 305
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
++CGL LVS+PHLARSYHHLFP+ F E++ + R C GCQ L
Sbjct: 306 KVCGLTLVSAPHLARSYHHLFPLDAFQEISLEEYHGER-----VCQGCQGEL----KDQQ 356
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNP 404
+Y+ C C+ FC+ECD+++H+ LH CPGC H NP
Sbjct: 357 VYI-CTVCQSVFCVECDLFVHDFLHCCPGC---IHKNP 390
>gi|312384212|gb|EFR28989.1| hypothetical protein AND_02404 [Anopheles darlingi]
Length = 1093
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 156/413 (37%), Positives = 234/413 (56%), Gaps = 38/413 (9%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDR 72
AEEE+ E WE Y +++WEA++ED+ G + A+ +R+ R
Sbjct: 2 AEEEDPKE--------YRWETGY--EKTWEAIKEDDDGLIEGSVTDIIQKAKRKRQAMKR 51
Query: 73 S---------LVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 123
L + + D +P+R K +E F+ EFFDQNP+SQ+G++ +K
Sbjct: 52 GFSKLGMMRHLYVLLDCSEAMSVPDLKPTRFICSLKLLELFIEEFFDQNPISQLGVIAMK 111
Query: 124 DGVANCLTDLGGSPESHIKALMG-KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 182
A +T+L G+ H+KA+ +G+ SLQN L+L L +PS+ REVL++
Sbjct: 112 AKRAEKITELSGTARKHVKAVHALNTQLTGEPSLQNGLELALKTLRLVPSHASREVLVIM 171
Query: 183 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 242
+L+TCDP DI TI+ K IRCSV+ LSAE+ ICK+LC +TGG+Y+ LD++H+K+
Sbjct: 172 GSLTTCDPTDIHVTIETLKTEGIRCSVVSLSAEIRICKYLCTETGGTYAAVLDDAHYKDQ 231
Query: 243 IMEHAPPPPA--IAEFAIANLIKMGFP----QRAGEGSISICSCHKEVK------VGVGY 290
+++H PP A EF +LIKMGFP + E +++C CH + GY
Sbjct: 232 LLQHIDPPQAGNQQEF---SLIKMGFPHGKTETGKEPPLTMCMCHIDSTDEPAKLTSGGY 288
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT-PLCLNDPRNRSRS 349
CP+C ++ CELP +C CGL L S+PHLARS+HHLFP+ F E+T + R +
Sbjct: 289 HCPQCYSKYCELPVECAACGLTLASAPHLARSFHHLFPVPHFKELTLEQVQQEAREVPVN 348
Query: 350 TCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHS 402
C+ CQ+ L + +K C C+ FC++CDI+IHE+LH+C GC ++ S
Sbjct: 349 YCYACQKPLTVTTDKT--VYECDACRMVFCIDCDIFIHETLHSCVGCTTIPAS 399
>gi|328858838|gb|EGG07949.1| hypothetical protein MELLADRAFT_35246 [Melampsora larici-populina
98AG31]
Length = 455
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 157/411 (38%), Positives = 236/411 (57%), Gaps = 51/411 (12%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
+G AWE Y RSW+ ++ED+SG L N + + +R +RD R L
Sbjct: 55 DGQGYAWEDEYK--RSWDNVREDDSGSLEGAVNQLMANKR-KRIIRDTTSIQRGIIRHLC 111
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
+ D RP+R+ + + FV EFFDQNP+SQ+ + KD +A L+ L G
Sbjct: 112 LVIDLSLAMTDRDLRPNRLEMSLNYAQEFVTEFFDQNPISQMCIFITKDAIAERLSPLSG 171
Query: 136 SPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P H KAL K L SG+ SLQNAL++ + L+ +P +G +E L++ +L+TCDP DI
Sbjct: 172 NPVDHHKALSNKRKLEPSGEPSLQNALEMARATLAHLPPHGSKETLVIMGSLTTCDPEDI 231
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAI 253
+TI+K ++ ++R S++GLSAE+ ICK +C+ T G Y V ++E+HFKEL+ E PPPP++
Sbjct: 232 HKTIEKLEKDRMRVSIVGLSAEINICKEICRKTKGKYGVIMNETHFKELLFESIPPPPSL 291
Query: 254 AEFAI-----------ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCEL 302
+ ++L++MGFP + S+C+CH ++K G+ CPRC +++C++
Sbjct: 292 VNSSTSQSNRSTNTTSSDLMQMGFPTKLSNPIPSLCACHSKLK-SSGFICPRCGSKLCDV 350
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRS---RSTCFGCQQSL- 358
PTDC ICGL +VSSPHLARSY HLFP+A + E+ D N ++C+GC Q
Sbjct: 351 PTDCLICGLTVVSSPHLARSYRHLFPVANWKEI------DSENHEIECPTSCYGCSQVFS 404
Query: 359 -------------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+ N+ ++ C +CK FC CD++ HE L CPGC
Sbjct: 405 TSSTTTTTTTTTTTTITNQSSKFM-CNRCKHIFCSTCDLF-HEQLGLCPGC 453
>gi|331241057|ref|XP_003333178.1| hypothetical protein PGTG_14725 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312168|gb|EFP88759.1| hypothetical protein PGTG_14725 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 462
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 164/411 (39%), Positives = 235/411 (57%), Gaps = 54/411 (13%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTAR 80
+WE Y RSW+ L+EDESG L N + + RR +RD R L
Sbjct: 61 SWEEEYK--RSWDVLREDESGSLESAVNQLIANKR-RRVIRDTTSIQRGIIRHLCLIIDV 117
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D RP+R+ + + FV EFFDQNP+SQ+ ++ KD +A L+ L G+P H
Sbjct: 118 SLAMTDRDLRPNRLDMSLTYAKEFVTEFFDQNPISQLCILITKDAIAERLSGLSGNPLDH 177
Query: 141 IKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
KAL KL SG+ SLQN+L++ + LS +PS+G REVL+++ +L+TCDP DI +T++
Sbjct: 178 HKALSNKAKLTPSGEPSLQNSLEMARASLSHLPSHGSREVLVIFGSLTTCDPDDINKTLE 237
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
++ ++R S++GL+AE+ ICK +C+ T G Y V L+E HFKEL+ E PPP IA+
Sbjct: 238 NLEKDRMRVSMVGLAAEVRICKEICKRTQGQYGVILNEHHFKELLFEAISPPP-IAKSTT 296
Query: 259 -------ANLIKMGFPQR-------AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT 304
++LI+MGFP + + S C+CH +++ G+ CPRC ++ CE+PT
Sbjct: 297 NGPKTQSSSLIQMGFPNKITHDAHQVDASTHSFCACHSKLQ-STGFICPRCGSKNCEIPT 355
Query: 305 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL----LS 360
+C +CGL +VSSPHLARSY HLFP++ + E L+ + CFGC + L S
Sbjct: 356 NCSVCGLTIVSSPHLARSYRHLFPVSNWIEKNANSLSHQTFK----CFGCDKELQVNKAS 411
Query: 361 SGN--------------KPGLYVA-CPKCKKHFCLECDIYIHESLHNCPGC 396
N P + + CP+CK FC ECDIY HE L CPGC
Sbjct: 412 QTNDESNGNSNNATNANNPSINLYHCPRCKNMFCYECDIY-HEQLGLCPGC 461
>gi|354488323|ref|XP_003506320.1| PREDICTED: general transcription factor IIH subunit 2-like
[Cricetulus griseus]
gi|344248232|gb|EGW04336.1| General transcription factor IIH subunit 2 [Cricetulus griseus]
Length = 395
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 157/388 (40%), Positives = 226/388 (58%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDE+G L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C+G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCNGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ ELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNSTEPGLTLGGYFCPQCRAKYSELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E++ + C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD++IH+ LH CPGC
Sbjct: 359 V-CTVCQNVFCVDCDVFIHDCLHCCPGC 385
>gi|195377775|ref|XP_002047663.1| GJ11798 [Drosophila virilis]
gi|194154821|gb|EDW70005.1| GJ11798 [Drosophila virilis]
Length = 442
Score = 283 bits (725), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 153/414 (36%), Positives = 236/414 (57%), Gaps = 41/414 (9%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD- 71
A++E++D+ + WE Y +++WEA++ED+ G L A+ +R+
Sbjct: 2 ADDEQDDQKEY------RWETGY--EKTWEAIKEDDDGLLDGAIAEIIQKAKRKRQADKI 53
Query: 72 --------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 123
R + + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K
Sbjct: 54 KQNRLGMMRHMFIVLDCSESMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLGIIALK 113
Query: 124 DGVANCLTDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 181
A +T+L G+ H+KAL G + + + SLQN LDL L +PS+ RE++I+
Sbjct: 114 AKRAEKVTELTGTSRVHLKALAGLANVSLTSEPSLQNGLDLALKTLKVVPSHASREIVII 173
Query: 182 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 241
+L+TCDP DI +TI + K +IRCSVI LSAE+ IC++L Q T G++ +D++H+++
Sbjct: 174 MGSLTTCDPVDINQTIDELKRERIRCSVISLSAEIHICRYLTQQTMGTFGAVMDDAHYRD 233
Query: 242 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGY 290
++ PPPA A+ +LI+MGFP E +S+C CH E G+
Sbjct: 234 QLLAQVDPPPA-AKTQDNSLIRMGFPHSKNEVEGKDAPLSMCMCHIENLDEPSELSTTGH 292
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIA-----PFDEVTPLCLNDPRN 345
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ PF+ V P P
Sbjct: 293 HCPQCNSKYCELPVECQCCGLTLVSAPHLARSYHHLFPVPNFEELPFESVPPAA---PDC 349
Query: 346 RSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
S C+GC + L + +K C C + FC++CDI+IHE+LH C GC ++
Sbjct: 350 GSLRKCYGCIKVLNAQTDKS--VFKCGYCNQFFCIDCDIFIHETLHACVGCNTI 401
>gi|444318053|ref|XP_004179684.1| hypothetical protein TBLA_0C03620 [Tetrapisispora blattae CBS 6284]
gi|387512725|emb|CCH60165.1| hypothetical protein TBLA_0C03620 [Tetrapisispora blattae CBS 6284]
Length = 447
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 167/420 (39%), Positives = 234/420 (55%), Gaps = 41/420 (9%)
Query: 3 NSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYH 62
N +K +N A E +GG AWE RSW+ ++ DE + + S
Sbjct: 40 NKRKKTINNNALVGE-------SGGY-AWEDEIK--RSWDLVKVDEDDDMSTLVASIIEQ 89
Query: 63 AQYRRRLR-----DRSLVATTARIQKAAEM----DFRPSRMAVVAKQVEAFVREFFDQNP 113
+ R + R ++ T + +E+ D RP+R ++ + FV EFFDQNP
Sbjct: 90 RKKRATKKIITPYQRGIIRTLVLVLDCSEIMLEKDLRPNRYSMSLQYAIDFVHEFFDQNP 149
Query: 114 LSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIP 171
+SQ+G++ +++G+A+ ++ + G+P+ HI +L M K G+ SLQNAL++ +GLL +P
Sbjct: 150 ISQMGVIIMRNGLAHLVSQISGNPQDHIDSLKAMRKQEPKGNPSLQNALEMARGLLLPVP 209
Query: 172 SYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG---- 227
+ REVLI++ LS+ DPGDI +TI + KIR +VIGLSA++ IC+ LC T
Sbjct: 210 PHCTREVLIVFGGLSSTDPGDIHQTITSLVQEKIRATVIGLSAQVAICQELCTSTNYGDS 269
Query: 228 GSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVG 287
SY V LDE HFKEL + P P L+KMGFP R E + + C+CH ++ G
Sbjct: 270 DSYRVILDEVHFKELFSQAVTPLPVNKINKGFTLVKMGFPTRVFEDTPTFCTCHHKLIYG 329
Query: 288 VGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLND---PR 344
GY CP CK++VC LP C C L L+ S HLARSYHHL P+ F EV + D P
Sbjct: 330 -GYFCPNCKSKVCSLPIVCPCCDLMLILSTHLARSYHHLMPLNTFTEVE--VVKDAAFPT 386
Query: 345 NRSRSTCFGCQQSLLS-SGNKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
N CF CQ+ NK G + C +C K FC++CD+YIHE LHNCPGCES
Sbjct: 387 N----NCFSCQKGFPHLVNNKTGELLTSSRYRCGECHKDFCIDCDVYIHEILHNCPGCES 442
>gi|21356299|ref|NP_649427.1| Ssl1, isoform A [Drosophila melanogaster]
gi|442634242|ref|NP_001262227.1| Ssl1, isoform B [Drosophila melanogaster]
gi|10726963|gb|AAF51879.2| Ssl1, isoform A [Drosophila melanogaster]
gi|15010516|gb|AAK77306.1| GH08526p [Drosophila melanogaster]
gi|220945098|gb|ACL85092.1| Ssl1-PA [synthetic construct]
gi|220952514|gb|ACL88800.1| Ssl1-PA [synthetic construct]
gi|440216208|gb|AGB94920.1| Ssl1, isoform B [Drosophila melanogaster]
Length = 438
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 239/415 (57%), Gaps = 38/415 (9%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD- 71
A++E+ED+ + WE Y +++WEA+++DE G L A+ +R+ +
Sbjct: 2 ADDEQEDQKEY------RWETGY--EKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQKS 53
Query: 72 --------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 123
R + + + D +P+R+ K +E F+ EFFDQNP+SQ+GL+ +K
Sbjct: 54 KQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIALK 113
Query: 124 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 181
A +T+L G+ H+KAL + + + + SLQN LDL L +PS+ RE++I+
Sbjct: 114 AKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVII 173
Query: 182 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 241
+L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q T G++ LD++HF++
Sbjct: 174 MGSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRD 233
Query: 242 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGY 290
+M PPPA A+ +LI+MGFP E +S+C CH E G+
Sbjct: 234 QLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGH 292
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCLNDPRNR 346
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P +D +
Sbjct: 293 HCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLTSD 352
Query: 347 SRSTCFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCESL 399
R C+GC ++L +K V C CK+ FC++CDI+IH++LH C GC ++
Sbjct: 353 VRE-CYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNTI 406
>gi|255948596|ref|XP_002565065.1| Pc22g11160 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592082|emb|CAP98404.1| Pc22g11160 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 450
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 171/439 (38%), Positives = 241/439 (54%), Gaps = 58/439 (13%)
Query: 11 GEAEEEEED----EDDN------LNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
GE E+E+D DN GG E WE S R+WE L E G +
Sbjct: 10 GEVTEDEDDLQVTRGDNSRARRKQRGGAE-WELS----RTWETLVEGADGTINSTVEGLL 64
Query: 61 YHAQYRRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQ 111
+ +R L+D R L+ Q +E D RP+R + + + FVREFF+Q
Sbjct: 65 EAGKRKRLLKDTTPLQRGIIRHLILILDLSQSMSEKDLRPTRYLLTLRYAQEFVREFFEQ 124
Query: 112 NPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLL-- 167
NP+SQ+G++ ++DG+A ++ + G+P H+ A+ + G SLQN L++ +G L
Sbjct: 125 NPISQLGVLGLRDGLALRVSAMSGNPTEHLTAIQTLKTQDPKGLPSLQNGLEMARGALFE 184
Query: 168 -SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT 226
S PS+G REVL +Y +L + DPGDI TI KIR ++GL A++ IC+ LC T
Sbjct: 185 FSHTPSHGTREVLFIYGSLLSSDPGDIHRTIDTLISDKIRVGIVGLGAQVAICRELCTKT 244
Query: 227 GG----SYSVALDESHFKELIMEHAPPPPAIAEF-AIANLIKMGFPQRAGEGSISICSCH 281
G +Y VAL+E HF+EL+M+ PP A ++ + ++L+ MGFP R E S S+C+CH
Sbjct: 245 NGGDETAYGVALNEQHFRELMMDVTTPPAAYSQKESASSLLMMGFPSRTVESSPSLCACH 304
Query: 282 KEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLN 341
+ G GY C RC ++VC LP +C CGL L+ S HLARSYHHLFP+ + EV P
Sbjct: 305 SKPSRG-GYLCSRCNSKVCSLPAECPSCGLTLILSTHLARSYHHLFPLINWVEV-PW--- 359
Query: 342 DPRNRSRST-CFGCQQSLLS----------SGNKPGLYVA----CPKCKKHFCLECDIYI 386
R SRS+ CF C S S G+ V+ C C HFC++CD++
Sbjct: 360 --RRASRSSACFACGLSFPSVPPEDHWQTAENQTKGMSVSSRYECTACHNHFCIDCDLFA 417
Query: 387 HESLHNCPGCESLRHSNPI 405
HE +HNCPGC+S SNP+
Sbjct: 418 HEVVHNCPGCQS--RSNPL 434
>gi|195592457|ref|XP_002085951.1| GD15058 [Drosophila simulans]
gi|194197960|gb|EDX11536.1| GD15058 [Drosophila simulans]
Length = 438
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 155/415 (37%), Positives = 239/415 (57%), Gaps = 38/415 (9%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD- 71
A++E+ED+ + WE Y +++WEA+++DE G L A+ +R+ +
Sbjct: 2 ADDEQEDQKEY------RWETGY--EKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQKT 53
Query: 72 --------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 123
R + + + D +P+R+ K +E F+ EFFDQNP+SQ+GL+ +K
Sbjct: 54 KQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIALK 113
Query: 124 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 181
A +T+L G+ H+KAL + + + + SLQN LDL L +PS+ RE++I+
Sbjct: 114 AKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVII 173
Query: 182 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 241
+L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q T G++ LD++HF++
Sbjct: 174 MGSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRD 233
Query: 242 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGY 290
+M PPPA A+ +LI+MGFP E +S+C CH E G+
Sbjct: 234 QLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGH 292
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCLNDPRNR 346
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P +D +
Sbjct: 293 HCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDFTSD 352
Query: 347 SRSTCFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCESL 399
R C+GC ++L +K V C CK+ FC++CDI+IH++LH C GC ++
Sbjct: 353 VRE-CYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNTI 406
>gi|412993157|emb|CCO16690.1| predicted protein [Bathycoccus prasinos]
Length = 452
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 174/439 (39%), Positives = 231/439 (52%), Gaps = 61/439 (13%)
Query: 8 RLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRR 67
R AEEEE L+A+E+ Y +R+WE L ED G LR +S RR
Sbjct: 21 RYEFTAEEEE--------NALKAYEKRYQKERTWEDLTEDAEGNLR--SSSLEKDRSQRR 70
Query: 68 RL---RDRSLVATTARIQKAAE------------------MDFRPSRMAVVAKQVEAFVR 106
R R + A + A+ D RP+R AV+ + FVR
Sbjct: 71 RFLANEKRKKIEKEASQSRVAKGMIRYCYVILDLSDAIHVEDMRPNRSAVLLPLMIKFVR 130
Query: 107 EFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL---GCSGDSSLQNALDLV 163
EFF+QNPLSQ+GL+ KDG A +T+L GSPE+H+KA+ G G SLQN L+
Sbjct: 131 EFFNQNPLSQLGLIACKDGKAERITELSGSPETHVKAIKKAFASDGVGGSFSLQNGLEQA 190
Query: 164 QGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLC 223
L +P +G RE++ + S+LSTCDPG+I ++++K K+ K R +VI ++AE + K L
Sbjct: 191 MEGLRDVPPFGAREIIAIISSLSTCDPGNINDSVRKVKKMKARTNVICVAAETRVFKKLS 250
Query: 224 QDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRA------GEGSISI 277
++T G +SV+LD+SH LIME APPP + E A L++MGFP+R G G
Sbjct: 251 EETKGKFSVSLDQSHLTRLIMECAPPPALLLETAKPALVEMGFPRREPRKFGLGAGDEDD 310
Query: 278 CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT- 336
Y CPRC+AR ELP+ C C L LVSSPHLARSYHHLFP+ PF EV
Sbjct: 311 RDVLTIGPRNGEYRCPRCEARAEELPSQCGTCQLSLVSSPHLARSYHHLFPVMPFVEVKV 370
Query: 337 -----------------PLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFC 379
+D + CFGC + +S G+ C KC+K FC
Sbjct: 371 DGDSKNEEEEEKKRKKNSGKDDDDDGQFLRECFGCCVVVDAS---TGMLSKCLKCEKEFC 427
Query: 380 LECDIYIHESLHNCPGCES 398
CD+YIH+ LHNC GC S
Sbjct: 428 FACDVYIHDRLHNCVGCLS 446
>gi|296422371|ref|XP_002840734.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636957|emb|CAZ84925.1| unnamed protein product [Tuber melanosporum]
Length = 469
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/407 (39%), Positives = 231/407 (56%), Gaps = 41/407 (10%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
GG + ER RSW+ + E E G L + +R L+D R L+
Sbjct: 50 GGGAQKRERWEDIKRSWDNVVEGEDGSLSSTVAGLLEAGKRKRLLKDTTPLQRGIIRHLI 109
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
E DFRP+R + + FVRE+F+QNP+SQ+G++ ++DG+A ++DL G
Sbjct: 110 LILDLSSAMMEKDFRPTRYLLSLRYACDFVREYFEQNPISQLGVLGMRDGLAVRISDLSG 169
Query: 136 SPESHIKALMGKLGC---SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
+P HI+A+ GKL G SLQNAL++ + L PS+G REV+I++ AL + DPGD
Sbjct: 170 NPVDHIEAI-GKLRLDEGKGAPSLQNALEMSRAALFHAPSHGTREVVIVFGALLSSDPGD 228
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAP 248
I +TI E KIR SV+GLSA++ +C+ LC+ T G Y VALD+ HF+EL+++
Sbjct: 229 IHQTISHLVEDKIRVSVVGLSAQVAVCRELCKRTNAGDEGVYGVALDDKHFRELLLDTTI 288
Query: 249 PPPA-IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCR 307
PP A+ + ++L+ MGFP R E + S+C+CH + G GY C RC +VC LP +C
Sbjct: 289 PPVTRSAKMSASSLLMMGFPSRMVEKTASLCACHSTLTKG-GYLCSRCSTKVCALPMECP 347
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGCQQSL-------- 358
CGL L+ S HLARSYHHLFP+ + EV P + S+ST C+ CQ
Sbjct: 348 ACGLTLILSTHLARSYHHLFPLKNWVEV-PW-----KAASKSTHCYACQIPFPHPPAKPE 401
Query: 359 -------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
++G AC C HFC++CD++ HE+L+NCP C+S
Sbjct: 402 ELSAPAKTATGTSVSSRYACTICHNHFCIDCDVFCHETLYNCPACQS 448
>gi|145242846|ref|XP_001393996.1| TFIIH basal transcription factor complex p47 subunit [Aspergillus
niger CBS 513.88]
gi|134078553|emb|CAK40474.1| unnamed protein product [Aspergillus niger]
gi|350640268|gb|EHA28621.1| hypothetical protein ASPNIDRAFT_212323 [Aspergillus niger ATCC
1015]
Length = 457
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 156/419 (37%), Positives = 232/419 (55%), Gaps = 43/419 (10%)
Query: 11 GEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLR 70
GE + GG E WE S R+WE L E G + + +R LR
Sbjct: 27 GETTSASRSKRRKHRGGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLR 81
Query: 71 D---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVT 121
D R L+ Q E D RP+R + + + FVREFF+QNP+SQ+G++
Sbjct: 82 DTTPLQRGIIRHLILIIDLSQSMTEKDLRPTRYLLSLRYAQEFVREFFEQNPISQLGVLG 141
Query: 122 VKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVL 179
+KDG+A ++D+ G+P HI A+ + G SLQN ++ +G L PS+G RE+
Sbjct: 142 LKDGLAVRVSDMSGNPTEHISAIQSLRDQDPKGLPSLQNGFEMARGALFHTPSHGTREIF 201
Query: 180 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALD 235
+++ +L + DPGDI +TI KIR ++GL+A++ IC+ +C T G +Y VAL+
Sbjct: 202 VIFGSLLSSDPGDIHQTITTLINDKIRVGIVGLAAQVAICREICGKTNGGDDTTYGVALN 261
Query: 236 ESHFKELIMEHAPPPPAIAEF-AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPR 294
E HF++L+M PP ++ + ++L+ MGFP R E S+C+CH + G GY C R
Sbjct: 262 EQHFRDLVMNVTTPPATYSQKQSTSSLLMMGFPSRTVEAYPSLCACHSKPSRG-GYLCSR 320
Query: 295 CKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFG 353
C ++VC LP +C CGL L+ S HLARSYHHLFP+ + EV+ ++ SRS+ CF
Sbjct: 321 CNSKVCGLPAECPSCGLTLILSTHLARSYHHLFPLMNWVEVS------WQHASRSSVCFA 374
Query: 354 C----------QQSLLSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
C +Q + G G+ V+ C C+ HFC++CD++ HE +HNCPGC+S
Sbjct: 375 CGISFPSVPPKEQWHTTEGQTKGISVSSRYECTVCRNHFCIDCDLFAHEVVHNCPGCQS 433
>gi|195348862|ref|XP_002040966.1| GM22477 [Drosophila sechellia]
gi|194122476|gb|EDW44519.1| GM22477 [Drosophila sechellia]
Length = 438
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/416 (37%), Positives = 239/416 (57%), Gaps = 40/416 (9%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD- 71
A++E+ED+ + WE Y +++WEA+++DE G L A+ +R+ +
Sbjct: 2 ADDEQEDQKEY------RWETGY--EKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQKT 53
Query: 72 --------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 123
R + + + D +P+R+ K +E F+ EFFDQNP+SQ+GL+ +K
Sbjct: 54 KQNRLGMMRHMFVVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGLIALK 113
Query: 124 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 181
A +T+L G+ H+KAL + + + + SLQN LDL L +PS+ RE++I+
Sbjct: 114 AKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVII 173
Query: 182 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 241
+L+TCDP DI TI + K+ IRCSVI LSAE+ + ++L Q T G++ LD++HF++
Sbjct: 174 MGSLTTCDPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRD 233
Query: 242 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGY 290
+M PPPA A+ +LI+MGFP E +S+C CH E G+
Sbjct: 234 QLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGH 292
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST 350
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ + P + S T
Sbjct: 293 HCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAM--PASSSEFT 350
Query: 351 -----CFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCESL 399
C+GC ++L +K V C CK+ FC++CDI+IH++LH C GC ++
Sbjct: 351 SDVRECYGCAKALGQGVDKVADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNTI 406
>gi|121717593|ref|XP_001276096.1| transcription factor and DNA repair complex, core TFIIH, putative
[Aspergillus clavatus NRRL 1]
gi|119404294|gb|EAW14670.1| transcription factor and DNA repair complex, core TFIIH, putative
[Aspergillus clavatus NRRL 1]
Length = 456
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 160/404 (39%), Positives = 227/404 (56%), Gaps = 43/404 (10%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
GG E WE S R+WE L E G + + +R LRD R LV
Sbjct: 40 GGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLRDTTPLQRGIIRHLVL 94
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
Q E D RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+
Sbjct: 95 ILDLSQSMMEKDLRPTRYLLTLRYAQEFVREFFEQNPISQLGVLGLRDGLAIRISDMSGN 154
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P HI A+ + G SLQN L + +G L PS+G REV I++ +L + DPGDI
Sbjct: 155 PTEHISAIQALRDHDAKGLPSLQNGLGMARGALFHTPSHGTREVFIVFGSLLSSDPGDIY 214
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPP 250
TI KIR ++GL+A++ IC+ LC T G +Y VAL+E HF+EL+M+ PP
Sbjct: 215 RTIATLVNDKIRVRIVGLAAQVAICRELCSRTNGGDDTTYGVALNEQHFRELMMDVTTPP 274
Query: 251 PAIAEF-AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
++ + ++L+ MGFP R E S+C+CH + G GY+C RC ++VC LP +C C
Sbjct: 275 VTYSQKQSTSSLLMMGFPSRTVESCPSLCACHSKPSCG-GYSCSRCNSKVCGLPAECPSC 333
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGC----------QQSL 358
GL L+ S HLARSYHHLFP+ + EV P + SRS+ CF C Q
Sbjct: 334 GLTLILSTHLARSYHHLFPLMNWVEV-PW-----QQASRSSACFACGVYFPAVPPNDQWQ 387
Query: 359 LSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ G+ V+ C CK HFC++CD++ HE +HNCPGC+S
Sbjct: 388 TTESQAKGMSVSSRYECTVCKNHFCIDCDLFAHEVVHNCPGCQS 431
>gi|242008465|ref|XP_002425024.1| TFIIH basal transcription factor complex p44 subunit, putative
[Pediculus humanus corporis]
gi|212508673|gb|EEB12286.1| TFIIH basal transcription factor complex p44 subunit, putative
[Pediculus humanus corporis]
Length = 401
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 154/395 (38%), Positives = 231/395 (58%), Gaps = 36/395 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL------RDRSLVATTARIQKA 84
WE Y +++WEA+++DE G + + + R+R R L+ I
Sbjct: 11 WETGY--EKTWEAIRDDEGGRIEEASVNEIIEKEKRKRQELKTGNRRLGLMRHVYLIIDC 68
Query: 85 AE----MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG--SPE 138
+E D P+R K +E F+ EFF+QNP++Q+G++ ++ A L+DL G +
Sbjct: 69 SEAMLDQDLSPNRQLCTVKLLEGFIDEFFEQNPIAQMGVIITRNKRAEKLSDLAGVSKRQ 128
Query: 139 SHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
I +G L C+G SLQNAL+L L P++ REV+ + + L+TCDPG++ +TI+
Sbjct: 129 KEIIKSIGDLACTGQPSLQNALELAGKSLKLRPTHASREVIAIIANLTTCDPGNVADTIR 188
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
KE IRCSVIGL+AE+++ K L ++T G+YSV LD+ HFK + + PP + +
Sbjct: 189 FMKEENIRCSVIGLAAEVYVYKTLTKETKGTYSVILDDVHFKNQLFQQIDPPAMTSNLS- 247
Query: 259 ANLIKMGFPQRA---GEGSISICSCH---KEVKVGV-GYTCPRCKARVCELPTDCRICGL 311
A+LIKMGFP + + S+ +C CH EVK+ GY CP+C A+ CELP +C++C L
Sbjct: 248 ASLIKMGFPHHSLHDDKSSLGLCMCHLDDSEVKLKSDGYKCPQCAAKYCELPVECKVCSL 307
Query: 312 QLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVAC 371
LVS+PHLAR++HHLFP+ F+ D +N + CFGCQ+ S LY C
Sbjct: 308 TLVSAPHLARTFHHLFPVQSFERF------DGKN-AEGYCFGCQKKF--SEGDTYLY-KC 357
Query: 372 PKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIV 406
KC++ FC CDI++H+SL CPGC +NP++
Sbjct: 358 NKCEQRFCGVCDIFVHDSLRTCPGCA----TNPLL 388
>gi|50288221|ref|XP_446539.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525847|emb|CAG59466.1| unnamed protein product [Candida glabrata]
Length = 439
Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 230/403 (57%), Gaps = 35/403 (8%)
Query: 21 DDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD------- 71
++NL G G AWE RSW+ + ++ G + + S + R D
Sbjct: 42 NENLQGASGGYAWEDEIK--RSWDLVAVEDEGDMATLVASIVEARKKRAAKSDVTPYQRG 99
Query: 72 --RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 129
R+L+ T + E D RP+R A++ +Q FV EFFDQNP+SQ+G+VT+++G+A
Sbjct: 100 IIRTLILTIDSSEAMLEKDLRPNRHAMIIQQAIDFVHEFFDQNPISQMGIVTMRNGLAQL 159
Query: 130 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 187
++ + G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LS+
Sbjct: 160 VSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSS 219
Query: 188 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELI 243
DPGDI +TI + +IR V+GLSAE+ ICK LC+ T Y V LDE+H K+L
Sbjct: 220 NDPGDIHQTIASLVQEQIRVKVLGLSAEVAICKELCKQTNMGDTSFYQVLLDETHLKKLF 279
Query: 244 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 303
E P P L+KMGFP R E + C+CH ++ G GY CP C ++VC LP
Sbjct: 280 DEAVTPLPVNKINRGFTLVKMGFPTRIFEEQPTFCACHAKLIYG-GYFCPNCNSKVCSLP 338
Query: 304 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQQS--LL 359
T C C L L+ S HLARS+HHL P+ F EV P S T C+ CQ ++
Sbjct: 339 TVCPCCDLMLILSTHLARSFHHLMPLKTFVEV-------PAAESFPTENCYSCQMKFPII 391
Query: 360 SSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
S + + C +CK +C++CD++IHESLH CPGCES
Sbjct: 392 KSQKSNQMLTSSRYRCEECKNDYCIDCDVFIHESLHTCPGCES 434
>gi|194876451|ref|XP_001973778.1| GG16285 [Drosophila erecta]
gi|190655561|gb|EDV52804.1| GG16285 [Drosophila erecta]
Length = 438
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/415 (37%), Positives = 237/415 (57%), Gaps = 38/415 (9%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD- 71
A++E+ED+ + WE Y +++WEA+++DE G L A+ +R+ +
Sbjct: 2 ADDEQEDQKEY------RWETGY--EKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQKT 53
Query: 72 --------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 123
R + + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K
Sbjct: 54 KQNRLGMMRHMFLVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGIIALK 113
Query: 124 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 181
A +T+L G+ H+KAL + + + + SLQN LDL L +PS+ RE++I+
Sbjct: 114 AKRAEKVTELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVII 173
Query: 182 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 241
+L+TCDP DI TI + K IRCSVI LSAE+ + ++L Q T G++ LD++HF++
Sbjct: 174 MGSLTTCDPVDINITIDELKREGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRD 233
Query: 242 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGY 290
+M PPPA A+ +LI+MGFP E +S+C CH E G+
Sbjct: 234 QLMSQVDPPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGH 292
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCLNDPRNR 346
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P +D N
Sbjct: 293 HCPQCNSKYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLNNG 352
Query: 347 SRSTCFGCQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCESL 399
R C+ C ++L +K V C CK+ FC++CDI+IH++LH C GC ++
Sbjct: 353 VRE-CYACAKALGQGVDKAADKVVFRCGFCKQFFCVDCDIFIHDTLHACVGCNTI 406
>gi|58271290|ref|XP_572801.1| RNA polymerase II transcription factor [Cryptococcus neoformans
var. neoformans JEC21]
gi|57229060|gb|AAW45494.1| RNA polymerase II transcription factor, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 460
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 162/442 (36%), Positives = 234/442 (52%), Gaps = 59/442 (13%)
Query: 4 SERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHA 63
S R++ G A + + D G +AWE Y +SW+ +QEDESG L +
Sbjct: 28 SSRRQARGAAGKGKGKNKDT---GRQAWEGEY--QKSWDIVQEDESGSLESAVETLLARG 82
Query: 64 QYRRRLRD-----RSLVATTARIQKAAE----MDFRPSRMAVVAKQVEAFVREFFDQNPL 114
+ +R L RS++ I +E D+RP+R V+ + +V E+FDQNPL
Sbjct: 83 RRKRALMSDTPVRRSIIRHVFIIIDLSESMLDKDYRPTRFEVILGYLRTYVVEWFDQNPL 142
Query: 115 SQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPS 172
QIG++ ++D ++ L +GGSPE ++AL K L SG+ SLQN L + +G ++ +PS
Sbjct: 143 GQIGVIAMRDRLSEVLIPMGGSPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGGMAHLPS 202
Query: 173 YGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 229
E+L+++SA+ST DP I + IR S++ LS E+ ICK + + TGG
Sbjct: 203 TSSLEILVIFSAISTADPDGPITIHNVLDTLATGHIRTSILSLSGEIKICKQIAERTGGK 262
Query: 230 YSVALDESHFKELIMEHAPPPPAIAEFAIAN-----------------------LIKMGF 266
+ VALD+ H K+L+ E PPP AN L+ MGF
Sbjct: 263 FGVALDQEHLKDLLWETIPPPATTIAPVTANVRSALAAGGRGPNQTGERAPAGDLMVMGF 322
Query: 267 PQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 326
P R G ++C+CH ++ G GY CPRC +++C++PTDC +CGL +VSSPHLARS+ L
Sbjct: 323 PIRLPLGGETMCACHGLLRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHLARSFWFL 381
Query: 327 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL------------LSSGNKPGLYVACPKC 374
FP+A + PL + D S TCFGC + G P C KC
Sbjct: 382 FPVANYG---PLSIED-VVESSETCFGCDSEFSDATAINAGVAQVEDGVSPTGRYRCAKC 437
Query: 375 KKHFCLECDIYIHESLHNCPGC 396
K FC +CD+YIH++LH CPGC
Sbjct: 438 KHDFCADCDLYIHDTLHTCPGC 459
>gi|392865317|gb|EAS31097.2| transcription factor ssl1 [Coccidioides immitis RS]
Length = 471
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 154/392 (39%), Positives = 222/392 (56%), Gaps = 40/392 (10%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARIQKAAEMDF 89
R+WE+L E G + + +R LRD R L+ +E D
Sbjct: 60 RTWESLVEGADGTISSTVEGLLEAGKRKRLLRDTTPLQRGIIRHLILVLDLSIAMSEKDV 119
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGK 147
RP+R + + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ +
Sbjct: 120 RPTRYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILAIQALRT 179
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 207
+G SLQNAL++ +G L PS+G REVLI++ AL + DPGDI +TI KIR
Sbjct: 180 RDPTGLPSLQNALEMARGALFHTPSHGTREVLIIFGALLSSDPGDIHKTITSLVTDKIRV 239
Query: 208 SVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPPPAIAEF-AIANLI 262
V+GL+AE+ IC+ +C T Y VAL+E HF+EL+ME PP ++ A+ +L+
Sbjct: 240 GVVGLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPPVTRSQKQAVNSLL 299
Query: 263 KMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS 322
MGFP R E S S+C+CH + G GY C RC +++C LP +C CGL L+ S HLARS
Sbjct: 300 MMGFPSRTVESSQSLCACHSKPSRG-GYLCSRCGSKICTLPAECPACGLTLILSTHLARS 358
Query: 323 YHHLFPIAPFDEVTPLCLNDPRNRS--RSTCFGC----------QQSLLSSGNKPGLYVA 370
YHHLFP+ + EV P N++ S CF C Q G G+ V+
Sbjct: 359 YHHLFPLINWVEV-------PWNKASISSNCFACGNPFPPVPVRAQWETRGGTVKGMSVS 411
Query: 371 ----CPKCKKHFCLECDIYIHESLHNCPGCES 398
C C HFC++CD++ HE +HNCPGC+S
Sbjct: 412 SRYECTVCHNHFCIDCDVFAHEIVHNCPGCQS 443
>gi|195496832|ref|XP_002095860.1| GE22646 [Drosophila yakuba]
gi|194181961|gb|EDW95572.1| GE22646 [Drosophila yakuba]
Length = 438
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 152/408 (37%), Positives = 236/408 (57%), Gaps = 32/408 (7%)
Query: 20 EDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD-------- 71
+DD+ + WE Y +++WEA+++DE G L A+ +R+ +
Sbjct: 3 DDDHEDQKEYRWETGY--EKTWEAIKDDEDGMLDGAIAEIIQKAKRQRQAQKTKQNRLGM 60
Query: 72 -RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 130
R + + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K A +
Sbjct: 61 MRHMFLVLDCSESMSVPDLKPTRLRCTVKLLELFIEEFFDQNPISQLGIIALKAKRAEKV 120
Query: 131 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
T+L G+ H+KAL + + + + SLQN LDL L +PS+ RE++I+ +L+TC
Sbjct: 121 TELTGTSRVHLKALESLANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTC 180
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DP DI TI + K+ IRCSVI LSAE+ + ++L Q T G++ LD++HF++ +M
Sbjct: 181 DPVDINITIDELKKEGIRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVD 240
Query: 249 PPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGYTCPRCKA 297
PPPA A+ +LI+MGFP E +S+C CH E G+ CP+C +
Sbjct: 241 PPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNS 299
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCLNDPRNRSRSTCFG 353
+ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P +D + R C+
Sbjct: 300 KYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEELPFEAMPASSSDLTSGVRE-CYA 358
Query: 354 CQQSLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCESL 399
C ++L S +K V C CK++FC++CDI+IH++LH C GC ++
Sbjct: 359 CAKALGQSVDKVADKVVYRCGFCKQYFCVDCDIFIHDTLHACVGCNTI 406
>gi|395517618|ref|XP_003762972.1| PREDICTED: general transcription factor IIH subunit 2 [Sarcophilus
harrisii]
Length = 395
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 163/396 (41%), Positives = 226/396 (57%), Gaps = 38/396 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+ HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNARKHI 128
Query: 142 KALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L L L +P + REVLI++ +L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSLAMQTLKHMPGHTSREVLIIFGSLTTCDPSNIYDLIKS 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ ELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSTEPGLTLGGYFCPQCRAKYSELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F EV+ N R C GC L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLEAFQEVSLEEYNGER-----FCQGC----LGELKDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNP 404
+ C C+ FC++CD++IH+SLH CPGC H NP
Sbjct: 359 I-CTVCQNVFCVDCDLFIHDSLHCCPGC---IHKNP 390
>gi|169776637|ref|XP_001822785.1| TFIIH basal transcription factor complex p47 subunit [Aspergillus
oryzae RIB40]
gi|83771520|dbj|BAE61652.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874438|gb|EIT83320.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 458
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 163/444 (36%), Positives = 237/444 (53%), Gaps = 69/444 (15%)
Query: 11 GEAEEE-----EEDEDDN-------------------LNGGLEAWERSYADDRSWEALQE 46
G+++EE EDEDDN GG E WE S R+WE L E
Sbjct: 2 GDSDEEYIGEVSEDEDDNNVFRGSRSEGSASRAKRRKQRGGAE-WEVS----RTWETLVE 56
Query: 47 DESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVV 97
G + + +R L+D R L+ Q E D RP+R +
Sbjct: 57 GADGTISSTVEGLLEAGKRKRLLKDTTPLQRGIIRHLILIIDLSQSMTEKDLRPTRYLLT 116
Query: 98 AKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSS 155
+ + VREFF+QNP+SQ+G++ ++DG+A ++DL G+P HI A+ + G S
Sbjct: 117 LRYAQELVREFFEQNPISQLGVLGLRDGLAIRISDLSGNPTEHISAIQTLRDQDPKGLPS 176
Query: 156 LQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE 215
LQN +++ +G L PS+G RE+ I++ +L + DPGDI +TI K+R ++GL+A+
Sbjct: 177 LQNGIEMARGALFHTPSHGTREIFIIFGSLLSSDPGDIHQTIANLINDKVRVGIVGLAAQ 236
Query: 216 MFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAEF-AIANLIKMGFPQRA 270
+ IC+ LC T G Y VAL+E HF+EL+M+ PP ++ + ++L+ MGFP R
Sbjct: 237 VAICRELCAKTNGGDDTRYGVALNEQHFRELLMDVTTPPATYSQKQSASSLLMMGFPSRT 296
Query: 271 GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIA 330
E S S+C+CH + G GY C RC ++VC LP +C CGL L+ S HLARSYHHLFP+
Sbjct: 297 VETSPSLCACHSKSSCG-GYLCSRCNSKVCGLPAECPSCGLTLILSTHLARSYHHLFPLV 355
Query: 331 PFDEVTPLCLNDPRNRS--RSTCFGC----------QQSLLSSGNKPGLYVA----CPKC 374
+ EV P R+ S CF C Q + G+ V+ C C
Sbjct: 356 NWVEV-------PWQRASRSSVCFACGIAFPPVPPKDQWQTTENQAKGMSVSSRYECTVC 408
Query: 375 KKHFCLECDIYIHESLHNCPGCES 398
+ HFC++CD++ HE +HNCPGC+S
Sbjct: 409 ENHFCIDCDLFAHEVVHNCPGCQS 432
>gi|452986441|gb|EME86197.1| hypothetical protein MYCFIDRAFT_39800 [Pseudocercospora fijiensis
CIRAD86]
Length = 465
Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 160/410 (39%), Positives = 223/410 (54%), Gaps = 49/410 (11%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD-----RSLVATTARI---- 81
WE +R WE LQE G + + + +R L+D R ++ T I
Sbjct: 44 WESGV--NRGWE-LQESADGGIEDVLGGIEEAGKRKRLLKDTTPLQRGIIRHTLLIIDLS 100
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
AE D RP+R + AF+RE+F+QNP+SQ+G++ ++DGVA ++D+ G+P HI
Sbjct: 101 AAMAEKDLRPTRHLLTISNTVAFIREYFEQNPISQLGILGMRDGVALRVSDMSGNPNVHI 160
Query: 142 KALMGKLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
A+ G G +SLQNALD+ + L PS+G REV+I+ ALS+ DPGDI +TI+
Sbjct: 161 AAVRALRGTDPKGSASLQNALDMARAALYHTPSHGTREVVIILGALSSSDPGDIHDTIKA 220
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAE 255
C + KIR ++IGL+A+M IC + + T Y+VA+DE H++EL M PP A
Sbjct: 221 CIKDKIRVNIIGLAAQMQICAEIARKTNQGATNCYNVAVDEVHYRELFMGITTPPVVRAT 280
Query: 256 FAIAN------LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
A L+ MGFP R EG ++C+CH + G GY C RCKA+VC LP C C
Sbjct: 281 DTEAQKRNQAALLMMGFPSRIVEGKATLCACHGNLTRG-GYLCSRCKAKVCNLPATCPTC 339
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQ---SLLSS----- 361
L L+ S HLARSYHHLFP+ +DEV+ + + C+GC SL SS
Sbjct: 340 DLTLILSTHLARSYHHLFPLQNWDEVS---WERAQEKGSIACYGCHSAFPSLWSSTDETN 396
Query: 362 -------------GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
G C C+ HFC++CD++ HE HNCPGC+S
Sbjct: 397 GASHTRTRPKRAEGASESSRYECRTCQNHFCIDCDVFCHEVAHNCPGCQS 446
>gi|195019313|ref|XP_001984954.1| GH16776 [Drosophila grimshawi]
gi|193898436|gb|EDV97302.1| GH16776 [Drosophila grimshawi]
Length = 443
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 154/414 (37%), Positives = 234/414 (56%), Gaps = 41/414 (9%)
Query: 13 AEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD- 71
A++E++D+ + WE Y +++WEA++ED+ G L A+ +R+
Sbjct: 2 ADDEQDDQKEY------RWETGY--EKTWEAIKEDDDGLLDGAIAELIQKAKRKRQAEKT 53
Query: 72 --------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 123
R + + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K
Sbjct: 54 KQNRLGMMRHMFIVLDCSEAMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLGIIALK 113
Query: 124 DGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 181
A +T+L G+ H+KAL M + + + SLQN LDL L +PS+ RE++I+
Sbjct: 114 AKRAEKITELTGTSRVHLKALAGMANVSLTSEPSLQNGLDLALKTLKVVPSHASREIVII 173
Query: 182 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 241
+L+TCDP DI TI + K+ +IRCSVI LSAE+ IC++L Q T G++ LD+SH+++
Sbjct: 174 MGSLTTCDPVDINLTIDELKKERIRCSVISLSAEIHICRYLTQQTMGTFGAVLDDSHYRD 233
Query: 242 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGS-----ISICSCHKEV------KVGVGY 290
++ PPPA A+ +LI+MGFP E +S+C CH E G+
Sbjct: 234 QLLSQVDPPPA-AKTQDNSLIRMGFPHSKNEVEGKDEPLSMCMCHIENLEEPSGLSTTGH 292
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIA-----PFDEVTPLCLNDPRN 345
CP+C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ PF+ V P P
Sbjct: 293 HCPQCNSKYCELPVECQCCGLTLVSAPHLARSYHHLFPVPNFEELPFESVPPAA---PDC 349
Query: 346 RSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
S C+ C + L +K C C + FC++CDI+IHE+LH C GC ++
Sbjct: 350 GSLRKCYACIKVLNGLTDKS--VFKCGYCNQFFCIDCDIFIHETLHACVGCNTI 401
>gi|213402509|ref|XP_002172027.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces japonicus yFS275]
gi|212000074|gb|EEB05734.1| transcription factor TFIIH complex subunit Ssl1
[Schizosaccharomyces japonicus yFS275]
Length = 422
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 153/389 (39%), Positives = 218/389 (56%), Gaps = 28/389 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTAR 80
WE Y RSW+ ++ED G L + + +R LRD R L+
Sbjct: 39 TWEGEY--QRSWDIVKEDAEGSLAGVVEGLINAGKRKRILRDTTPLQRGIIRHLILVVDL 96
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
E DFR R+ + K F+ +F+QNP+SQ+G++ +KDG+A ++D+ G+P+ H
Sbjct: 97 SIAMEERDFRTKRVDLQIKYGTEFIINYFEQNPISQLGIIAMKDGIAVKISDIHGNPQDH 156
Query: 141 IKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKC 200
I L C G +SLQNAL++ + L+ I S+G REVLI++ +L + DPGDI +TI
Sbjct: 157 INKLKKLRECKGMASLQNALEMARASLAHIASHGTREVLIIFGSLLSSDPGDIFQTIDSL 216
Query: 201 KESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPPAIAEF 256
+ I +IGLSAE+ +CK +C+ T +Y V L+E+H +EL+ME PP ++
Sbjct: 217 VKENISVHIIGLSAEVSVCKEICRRTNNGAQNAYGVILNENHLEELLMEKTIPPATHSDE 276
Query: 257 AI-ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 315
I A+L+KMGFP + E S+CSCH G G+ CPRCK +VC LP +C C L L+
Sbjct: 277 GIPASLVKMGFPSKVIEPFPSLCSCHSVASRG-GFHCPRCKCKVCTLPIECPGCSLILIL 335
Query: 316 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS------GNKPGLYV 369
S HLARSYHHLFP+ + E+ P + + CF CQ + N
Sbjct: 336 STHLARSYHHLFPLKNWREI-PW----SEKPTSTYCFACQAPFPMTPQAKEDQNASSSRY 390
Query: 370 ACPKCKKHFCLECDIYIHESLHNCPGCES 398
ACP C HFC+ECD++ HE LH C GC+S
Sbjct: 391 ACPSCGHHFCIECDVFAHEQLHECFGCQS 419
>gi|289743109|gb|ADD20302.1| RNA polymerase II transcription initiation [Glossina morsitans
morsitans]
Length = 419
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 230/402 (57%), Gaps = 36/402 (8%)
Query: 22 DNLNGGLEA---WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD------- 71
DNL+G WE Y +++WE ++ED+ G L A+ +R+ +
Sbjct: 2 DNLDGEEPKEYRWETGY--EKTWEGIKEDDDGILDDAIAEIIQKAKRKRQAQKTKQNKLG 59
Query: 72 --RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANC 129
R L + + D +P+R+ + +E F+ EFFDQNP+SQ+GL+ +K A
Sbjct: 60 MMRHLFIILDCSESMSVPDLKPTRLLCTLRLLEIFIEEFFDQNPVSQMGLIVLKSKRAEK 119
Query: 130 LTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALST 187
+T L G+ + H+ AL + K+ SG+ SLQN LDL L +PS+ RE+L++ ++L+T
Sbjct: 120 ITALTGTAKLHLNALESLSKISLSGEPSLQNGLDLALKSLKVVPSHASREILVIMASLTT 179
Query: 188 CDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHA 247
CDP DI TI K IRCSVI LSAE+++C+HL Q T G Y LD++HF++ ++ +
Sbjct: 180 CDPVDINVTIDILKNEGIRCSVISLSAEIYVCRHLTQQTVGLYGAVLDDAHFRDQLLAYI 239
Query: 248 PPPPAIAEFAIANLIKMGFPQ-RAGEGS---ISICSCHKEVK------VGVGYTCPRCKA 297
PP A ++ +LIKMGFP RA E +S+C CH E GY CP+C +
Sbjct: 240 DPPAA-SQTQENSLIKMGFPHARADESKDPPLSMCMCHIENPEEPSKLTSGGYHCPQCFS 298
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQS 357
+ CELP +C+ CGL LVS+PHLARSYHHLFP+ F E+ N + C+ CQ+
Sbjct: 299 KYCELPVECQTCGLTLVSAPHLARSYHHLFPVQHFAELA-------YNGQAAVCYACQRP 351
Query: 358 LLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
L S NK C C + +C +CDI+IH++LH C GC ++
Sbjct: 352 LSESTNK--FVYRCEICTQIYCCDCDIFIHDTLHTCVGCNTI 391
>gi|58271288|ref|XP_572800.1| RNA polymerase II transcription factor [Cryptococcus neoformans
var. neoformans JEC21]
gi|134114810|ref|XP_773703.1| hypothetical protein CNBH1580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256331|gb|EAL19056.1| hypothetical protein CNBH1580 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229059|gb|AAW45493.1| RNA polymerase II transcription factor, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 460
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 161/442 (36%), Positives = 234/442 (52%), Gaps = 59/442 (13%)
Query: 4 SERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHA 63
S R++ G A + + D G +AWE Y +SW+ +QEDESG L +
Sbjct: 28 SSRRQARGAAGKGKGKNKDT---GRQAWEGEY--QKSWDIVQEDESGSLESAVETLLARG 82
Query: 64 QYRRRLRD-----RSLVATTARIQKAAE----MDFRPSRMAVVAKQVEAFVREFFDQNPL 114
+ +R L RS++ I +E D+RP+R V+ + +V E+FDQNPL
Sbjct: 83 RRKRALMSDTPVRRSIIRHVFIIIDLSESMLDKDYRPTRFEVILGYLRTYVVEWFDQNPL 142
Query: 115 SQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPS 172
QIG++ ++D ++ L +GG+PE ++AL K L SG+ SLQN L + +G ++ +PS
Sbjct: 143 GQIGVIAMRDRLSEVLIPMGGNPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGGMAHLPS 202
Query: 173 YGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 229
E+L+++SA+ST DP I + IR S++ LS E+ ICK + + TGG
Sbjct: 203 TSSLEILVIFSAISTADPDGPITIHNVLDTLATGHIRTSILSLSGEIKICKQIAERTGGK 262
Query: 230 YSVALDESHFKELIMEHAPPPPAIAEFAIAN-----------------------LIKMGF 266
+ VALD+ H K+L+ E PPP AN L+ MGF
Sbjct: 263 FGVALDQEHLKDLLWETIPPPATTIAPVTANVRSALAAGGRGPNQTGERAPAGDLMVMGF 322
Query: 267 PQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 326
P R G ++C+CH ++ G GY CPRC +++C++PTDC +CGL +VSSPHLARS+ L
Sbjct: 323 PIRLPLGGETMCACHGLLRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHLARSFWFL 381
Query: 327 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL------------LSSGNKPGLYVACPKC 374
FP+A + PL + D S TCFGC + G P C KC
Sbjct: 382 FPVANYG---PLSIED-VVESSETCFGCDSEFSDATAINAGVAQVEDGVSPTGRYRCAKC 437
Query: 375 KKHFCLECDIYIHESLHNCPGC 396
K FC +CD+YIH++LH CPGC
Sbjct: 438 KHDFCADCDLYIHDTLHTCPGC 459
>gi|47210864|emb|CAF92597.1| unnamed protein product [Tetraodon nigroviridis]
Length = 395
Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 166/390 (42%), Positives = 223/390 (57%), Gaps = 37/390 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ RR ++ R L
Sbjct: 12 WEGGY--ERTWEVLKEDESGSLKASVEEILFQAKKRRLVQSHGQVRLGMMRHLYVVIDCS 69
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQ+G++T K+ A LTDL G+P+ H
Sbjct: 70 RSMEDQDLKPNRLTSTLKLMEGFVEEYFDQNPISQMGIITTKNKRAEKLTDLAGNPKKHA 129
Query: 142 KALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
AL + C G+ SL N L L L +P + REVLI+ S+L+TCDPG+I E IQ
Sbjct: 130 AALKKAVDSACVGEPSLYNCLSLALQTLRHMPGHTSREVLIILSSLTTCDPGNIYELIQT 189
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K K+R SV+GLSAE+ +C L ++TGGSY V LDESHFKEL+M H PPPA +
Sbjct: 190 LKSLKVRVSVVGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPPPASCS-SEC 248
Query: 260 NLIKM-GFPQRA------GEGSISICSCHKEVKVG------VGYTCPRCKARVCELPTDC 306
+LI+M GFPQ + S H E G GY CP+C A+ ELP +C
Sbjct: 249 SLIRMAGFPQHTMASLTDQDAKPSFSMAHLEGGGGGPDLSLGGYFCPQCHAKYTELPVEC 308
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
++CGL LV +PHLARS+HHLFP+ F E + + P++R C CQ L K
Sbjct: 309 KVCGLTLVLAPHLARSFHHLFPLQVFPESS--AEDPPKDR---FCQACQGRL-----KDK 358
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGC 396
CP C FC+ECD++IH+SLH CP C
Sbjct: 359 SVFTCPSCHSVFCVECDLFIHDSLHCCPCC 388
>gi|321261922|ref|XP_003195680.1| component of RNA polymerase transcription factor TFIIH; Ssl1p
[Cryptococcus gattii WM276]
gi|317462154|gb|ADV23893.1| Component of RNA polymerase transcription factor TFIIH, putative;
Ssl1p [Cryptococcus gattii WM276]
Length = 461
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 160/442 (36%), Positives = 230/442 (52%), Gaps = 59/442 (13%)
Query: 4 SERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHA 63
S R+ G A + + N + G +AWE Y +SW+ +QEDESG L +
Sbjct: 28 SSRRHGRGAAGKRK---GKNKDAGRQAWEGEY--QKSWDIVQEDESGSLESAVETLLARG 82
Query: 64 QYRRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPL 114
+ +R L R L + + D+RPSR V+ + +V E+FDQNPL
Sbjct: 83 RRKRALMSDTPVRRSIIRHLFIIIDLSESMLDKDYRPSRFEVILGYLRTYVVEWFDQNPL 142
Query: 115 SQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPS 172
QIG++ ++D ++ + +GGSPE ++AL K L SG+ SLQN L + +G ++ +PS
Sbjct: 143 GQIGVIVMRDRLSEVVIPMGGSPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGGMAHLPS 202
Query: 173 YGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 229
E L+++SA+ST DP I + IR S++ LS E+ ICK + + TGG
Sbjct: 203 TSSLETLVIFSAISTADPDGPITIHNVLDTLVTGHIRTSILSLSGEIKICKQIAERTGGK 262
Query: 230 YSVALDESHFKELIMEHAPPPPAIAEFAIAN-----------------------LIKMGF 266
+ VALD+ H K+L+ E PPP AN L+ MGF
Sbjct: 263 FGVALDQDHLKDLLWETIPPPATTITPVTANVRSALAAGGRGPNQTGGRAPAGDLMVMGF 322
Query: 267 PQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 326
P R G ++C+CH ++ G GY CPRC +++C++PTDC +CGL +VSSPHLARS+ L
Sbjct: 323 PIRLPLGGETMCACHGLLRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHLARSFWFL 381
Query: 327 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL------------LSSGNKPGLYVACPKC 374
FP+A + PL + D S TCFGC + G P C KC
Sbjct: 382 FPVANYG---PLAIEDVVG-SSGTCFGCDSEFSDTSAINAGVAQVEDGVSPAGRYRCAKC 437
Query: 375 KKHFCLECDIYIHESLHNCPGC 396
K FC +CD+YIH++LH CPGC
Sbjct: 438 KHDFCADCDLYIHDTLHTCPGC 459
>gi|388580345|gb|EIM20660.1| TFIIH basal transcription factor complex, subunit SSL1 [Wallemia
sebi CBS 633.66]
Length = 444
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 149/410 (36%), Positives = 237/410 (57%), Gaps = 51/410 (12%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR----------LRDRSLVATTA 79
+WE Y RSW+ + EDESG L N+ + RRR +R LV +
Sbjct: 44 SWESEY--KRSWDVVAEDESGSLTTSVNAFIERNKRRRRHGGIPIQRAIIRHNLLVLDLS 101
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
++ D RP+R + + +V+E+FDQNP+ Q+G + ++ GVA + + GS
Sbjct: 102 --LAMSDRDMRPNRFLLSLEYAREYVKEYFDQNPIGQMGAIGMRSGVAEWICKMSGSQHD 159
Query: 140 HIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
+K+L K L +G+ SLQNAL++ + ++ +P++ RE+++++ +L+TCDPG+I +T+
Sbjct: 160 LVKSLQNKNKLEPNGEPSLQNALEMARASMAHLPTHASREIVVVFGSLTTCDPGNIHDTL 219
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA 257
+ KIR ++I L+AE+ I + + + TGG+ SVALDE H+K+++ E PPP A
Sbjct: 220 RALIRDKIRVNIISLAAEVRILREVAEKTGGTLSVALDEGHYKDVLFETVPPPAVHTAKA 279
Query: 258 I------------ANLIKMGFPQRAG-EGSISICSCHKEVKVGVGYTCPRCKARVCELPT 304
+ ++L++MGF R +++C+CH E++ GY CPRC +++C++PT
Sbjct: 280 LNTVEQGGGSVDESDLMQMGFAVRLPYTAPLTLCACHSELRRQ-GYICPRCGSKLCDIPT 338
Query: 305 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQ-------- 356
DC +C L +VSSPHLARSYHHLFP+ + V P + + S + CFGC+Q
Sbjct: 339 DCAVCDLVVVSSPHLARSYHHLFPVPDWAVVNPQAITE---TSDTRCFGCRQVFPPVAQS 395
Query: 357 ---------SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 397
++ ++ + G Y CPKC FC ECDIY HE+LH CPGC+
Sbjct: 396 MTLPTPTAATVSANISATGRY-RCPKCMHDFCSECDIYCHETLHVCPGCQ 444
>gi|45188211|ref|NP_984434.1| ADR338Cp [Ashbya gossypii ATCC 10895]
gi|44983055|gb|AAS52258.1| ADR338Cp [Ashbya gossypii ATCC 10895]
gi|374107649|gb|AEY96557.1| FADR338Cp [Ashbya gossypii FDAG1]
Length = 469
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 161/401 (40%), Positives = 222/401 (55%), Gaps = 40/401 (9%)
Query: 24 LNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSL 74
+NGG AWE RSW+ ++ D G + + S + R +D R++
Sbjct: 79 VNGGY-AWEDEI--QRSWDLVKVDNEGNMAALVASIIEARKKRSANKDITPYQRGIIRTM 135
Query: 75 VATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ + E D RP+R A+ + FV FFDQNP+SQ+ +V +++G+A ++ +
Sbjct: 136 ILVIDCSEAMLERDLRPNRHAMTVQYAIDFVHNFFDQNPISQLCIVAMRNGMAQLVSQVS 195
Query: 135 GSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
G+P+ HI+AL K G+ SLQNAL++ +GLL +PS+ REVLI++ ALS+ DPGD
Sbjct: 196 GNPQEHIEALKAVRKQEPKGNPSLQNALEMARGLLLHVPSHCTREVLIVFGALSSTDPGD 255
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT----GGSYSVALDESHFKELIMEHAP 248
I +TI IR VIGLSA++ ICK LC+ T Y V L+E+HFK+L E
Sbjct: 256 IHQTIASLANEHIRTRVIGLSAQVAICKELCKQTNYGDNSYYGVILNETHFKDLFAEAVV 315
Query: 249 PPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 308
P P L+KMGFP R E + S C+CH + G GY CP CK++VC LP C
Sbjct: 316 PLPVNKMNKGFTLVKMGFPTRIFEDTPSFCTCHSRLVHG-GYFCPNCKSKVCSLPIVCPC 374
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ-----------QS 357
C L L+ S HLARSYHHL P+ F E+ P+ + P CF CQ Q
Sbjct: 375 CDLMLILSTHLARSYHHLMPLKVFQEL-PVDIQFP----TENCFSCQKKFPRLRNYKTQD 429
Query: 358 LLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
LL+S C CK FC++CD+++HE LHNCPGCES
Sbjct: 430 LLTSSR-----YRCENCKCDFCIDCDVFVHEILHNCPGCES 465
>gi|320040921|gb|EFW22854.1| RNA polymerase TFIIH complex subunit Ssl1 [Coccidioides posadasii
str. Silveira]
Length = 471
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 221/392 (56%), Gaps = 40/392 (10%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARIQKAAEMDF 89
R+WE+L E G + + +R LRD R L+ +E D
Sbjct: 60 RTWESLVEGADGTISSTVEGLLEAGKRKRLLRDTTPLQRGIIRHLILVLDLSIAMSEKDV 119
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGK 147
RP+R + + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ +
Sbjct: 120 RPTRYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILAIQALRT 179
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 207
+G SLQNAL++ +G L PS+G REVLI++ L + DPGDI +TI KIR
Sbjct: 180 RDPTGLPSLQNALEMARGALFHTPSHGTREVLIIFGTLLSSDPGDIHKTITSLVADKIRV 239
Query: 208 SVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPPPAIAEF-AIANLI 262
V+GL+AE+ IC+ +C T Y VAL+E HF+EL+ME PP ++ A+ +L+
Sbjct: 240 GVVGLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPPVTRSQKQAVNSLL 299
Query: 263 KMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS 322
MGFP R E S S+C+CH + G GY C RC +++C LP +C CGL L+ S HLARS
Sbjct: 300 MMGFPSRTVEPSQSLCACHSKPSRG-GYLCSRCGSKICTLPAECPACGLTLILSTHLARS 358
Query: 323 YHHLFPIAPFDEVTPLCLNDPRNRS--RSTCFGC----------QQSLLSSGNKPGLYVA 370
YHHLFP+ + EV P N++ S CF C Q G G+ V+
Sbjct: 359 YHHLFPLINWVEV-------PWNKASISSNCFACGNPFPPVPVRAQWETRGGTVKGMSVS 411
Query: 371 ----CPKCKKHFCLECDIYIHESLHNCPGCES 398
C C HFC++CD++ HE +HNCPGC+S
Sbjct: 412 SRYECTVCHNHFCIDCDVFAHEIVHNCPGCQS 443
>gi|194752572|ref|XP_001958595.1| GF11005 [Drosophila ananassae]
gi|190625877|gb|EDV41401.1| GF11005 [Drosophila ananassae]
Length = 422
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/406 (37%), Positives = 230/406 (56%), Gaps = 32/406 (7%)
Query: 20 EDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD-------- 71
+D+N + WE Y +++WEA+++DE G L A+ +R +
Sbjct: 3 DDENEDQKEYRWETGY--EKTWEAIKDDEDGLLDGAIAEIIQKAKRQRLAQKTKQNRLGM 60
Query: 72 -RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 130
R L + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K A +
Sbjct: 61 MRHLYVIVDCSESMSVPDLKPTRLRCTIKLLEQFIEEFFDQNPISQLGIIALKAKRAEKV 120
Query: 131 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
T+L G+ H+KAL + + + + SLQN LDL L +PS+ RE++++ +L+TC
Sbjct: 121 TELTGTSRVHLKALESLINVSLTSEPSLQNGLDLALKTLKVVPSHASREIVVIMGSLTTC 180
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DP DI TI + K+ IRCSVI LSAE+ + ++L Q T G++ LD++HF++ +M
Sbjct: 181 DPVDINLTIDELKKEGIRCSVISLSAEIHVARYLTQQTLGTFGAVLDDAHFRDQLMSQVD 240
Query: 249 PPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGYTCPRCKA 297
PPPA A+ +LI+MGFP E +S+C CH E V G+ CP+C +
Sbjct: 241 PPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSVLCTTGHHCPQCNS 299
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT----PLCLNDPRNRSRSTCFG 353
+ CELP +C+ CGL LVS+PHLARSYHHL P+ F+EVT P +D N C+
Sbjct: 300 KYCELPVECQSCGLTLVSAPHLARSYHHLIPVPNFEEVTLDSMPTVSSD-YNGGVKECYA 358
Query: 354 CQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
C + L +K C C++ FC++CD +IHE+LH C GC ++
Sbjct: 359 CAKVLTFVADKS--IFKCGFCQQFFCIDCDAFIHETLHACVGCNTI 402
>gi|303319293|ref|XP_003069646.1| TFIIH basal transcription factor complex p47 subunit , putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240109332|gb|EER27501.1| TFIIH basal transcription factor complex p47 subunit , putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 471
Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 153/392 (39%), Positives = 221/392 (56%), Gaps = 40/392 (10%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARIQKAAEMDF 89
R+WE+L E G + + +R LRD R L+ +E D
Sbjct: 60 RTWESLVEGADGTISSTVEGLLEAGKRKRLLRDTTPLQRGIIRHLILVLDLSIAMSEKDV 119
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGK 147
RP+R + + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ +
Sbjct: 120 RPTRYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILAIQALRT 179
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 207
+G SLQNAL++ +G L PS+G REVLI++ L + DPGDI +TI KIR
Sbjct: 180 RDPTGLPSLQNALEMARGALFHTPSHGTREVLIIFGTLLSSDPGDIHKTITSLVADKIRV 239
Query: 208 SVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPPPAIAEF-AIANLI 262
V+GL+AE+ IC+ +C T Y VAL+E HF+EL+ME PP ++ A+ +L+
Sbjct: 240 GVVGLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPPVTRSQKQAVNSLL 299
Query: 263 KMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS 322
MGFP R E S S+C+CH + G GY C RC +++C LP +C CGL L+ S HLARS
Sbjct: 300 MMGFPSRTVEPSQSLCACHSKPSRG-GYLCSRCGSKICTLPAECPACGLTLILSTHLARS 358
Query: 323 YHHLFPIAPFDEVTPLCLNDPRNRS--RSTCFGC----------QQSLLSSGNKPGLYVA 370
YHHLFP+ + EV P N++ S CF C Q G G+ V+
Sbjct: 359 YHHLFPLINWVEV-------PWNKASISSNCFACGNPFPPVPVRAQWETRGGTVKGMSVS 411
Query: 371 ----CPKCKKHFCLECDIYIHESLHNCPGCES 398
C C HFC++CD++ HE +HNCPGC+S
Sbjct: 412 SRYECTVCHNHFCIDCDVFAHEIVHNCPGCQS 443
>gi|146324050|ref|XP_001481497.1| RNA polymerase TFIIH complex subunit Ssl1 [Aspergillus fumigatus
Af293]
gi|129556348|gb|EBA27248.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Aspergillus
fumigatus Af293]
gi|159126166|gb|EDP51282.1| transcription factor and DNA repair complex, core TFIIH, putative
[Aspergillus fumigatus A1163]
Length = 456
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 160/405 (39%), Positives = 226/405 (55%), Gaps = 45/405 (11%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
GG E WE S R+WE L E G + + +R LRD R L+
Sbjct: 41 GGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLRDTTPLQRGIIRHLIL 95
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
Q AE D RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+
Sbjct: 96 ILDLSQSMAEKDLRPTRYLLSLRYAQEFVREFFEQNPISQLGVLGLRDGLAIRVSDMSGN 155
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P HI A+ + G SLQN L++ +G L PS+G REV +++ ++ + DPGDI
Sbjct: 156 PTEHISAIQALRDHDPKGLPSLQNGLEMARGALFHTPSHGTREVFVIFGSILSSDPGDIH 215
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPP 250
+TI KI + GL+A++ IC+ LC T +Y VAL+E HF+EL+M+ PP
Sbjct: 216 QTITTLINDKISVRIAGLAAQVAICRELCSRTNAGDDTTYGVALNEQHFRELMMDVTTPP 275
Query: 251 PAIAEF-AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
++ A ++L+ MGFP R E S+C+CH E G GY C RC ++VC LP +C C
Sbjct: 276 VTYSQKKATSSLLMMGFPSRTVETCPSLCACHSEPSCG-GYLCSRCNSKVCGLPAECPSC 334
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS-TCFGC----------QQS 357
GL L+ S HLARSYHHLFP+ + EV P R SRS TCF C Q
Sbjct: 335 GLTLILSTHLARSYHHLFPLMNWIEV-------PWQRASRSLTCFACGIYFPTVPPKDQW 387
Query: 358 LLSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ G+ V+ C CK HFC++CD++ HE +HNCPGC+S
Sbjct: 388 QATESQAKGMSVSSRYECTVCKNHFCIDCDLFAHEIVHNCPGCQS 432
>gi|336272171|ref|XP_003350843.1| hypothetical protein SMAC_02512 [Sordaria macrospora k-hell]
gi|380095007|emb|CCC07509.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 466
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 173/444 (38%), Positives = 232/444 (52%), Gaps = 69/444 (15%)
Query: 15 EEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSL 74
E D++ NG A RS SWE ++ L D S A+ R + R L
Sbjct: 7 EYASDDELKRNGKRTADGRSKQTKASWEDVKRSWDTVLETAD-SGLSIAEIREAEKRRRL 65
Query: 75 VATTARIQKA---------------AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGL 119
+ T +Q+ A+ D P+R VV FVRE+F+QNP+SQ+G+
Sbjct: 66 LRDTTPLQRGIIRHLMLVLDMSFAMADKDLLPNRYRVVLNNAIGFVREYFEQNPISQLGI 125
Query: 120 VTVKDGVANCLTDLGGSPESHIKALMG---KLGCSGDSSLQNALDLVQGLLSQIPSYGHR 176
V ++DG+A ++DL G+P HI+ LM + G+SSLQNAL + +G L Q PS+ R
Sbjct: 126 VGMRDGIAVRISDLSGNPAEHIEKLMQWSEQQDPQGNSSLQNALQMCRGALYQTPSHATR 185
Query: 177 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG---GSYSVA 233
EVLI+Y AL + DPGDI +TI +IR SV+GL+ ++ IC LC+ T G+YSVA
Sbjct: 186 EVLIIYGALVSIDPGDIHDTINDLVADRIRVSVVGLAGQVAICTELCKRTNNHDGNYSVA 245
Query: 234 LDESHFKELIMEHAPPPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGY 290
+DE H KEL PP E A+L+ MGFP R A + +S C+CH + GY
Sbjct: 246 IDEVHLKELFFAATTPPVTRTPEQNTASLLMMGFPSRTLAPKDHVSYCACHAK-PTREGY 304
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS 349
TCPRC +VC LP DC IC L L+ S HLARSYHHLFP+ F EV P ++ SRS
Sbjct: 305 TCPRCGIKVCRLPIDCPICKLTLIQSTHLARSYHHLFPLKVFVEV-------PWSQASRS 357
Query: 350 T-CFGC---------------------------QQSLLSSGNKPGL-------YVACPKC 374
T C+ C +Q KP L AC C
Sbjct: 358 TACYSCLSPFPTGPRDTVAAAPAVLGGRAGKGGKQDSDPKNPKPELKGVSESGRYACQVC 417
Query: 375 KKHFCLECDIYIHESLHNCPGCES 398
HFC++CD++ HE++HNCPGC+S
Sbjct: 418 GNHFCIDCDVFAHETIHNCPGCQS 441
>gi|195127781|ref|XP_002008346.1| GI13436 [Drosophila mojavensis]
gi|193919955|gb|EDW18822.1| GI13436 [Drosophila mojavensis]
Length = 461
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 150/407 (36%), Positives = 231/407 (56%), Gaps = 32/407 (7%)
Query: 17 EEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----- 71
++D+DD WE Y +++WEA++ED+ G L A+ +R+
Sbjct: 3 DDDQDDQKE---YRWETGY--EKTWEAIKEDDDGLLDGAIADIIQKAKRKRQADKTKQNR 57
Query: 72 ----RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVA 127
R + + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K A
Sbjct: 58 LGMMRHMFIVLDCSESMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLGIIALKAKRA 117
Query: 128 NCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSAL 185
+T+L G+ H+KAL + + + + SLQN LDL L +PS+ RE++I+ +L
Sbjct: 118 EKITELTGTSRVHLKALASLANVPLTSEPSLQNGLDLALKTLKVVPSHASREIVIIMGSL 177
Query: 186 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIME 245
+TCDP DI TI + K +IRCSVI LSAE+ IC++L Q T G++ LD++H+++ ++
Sbjct: 178 TTCDPVDINVTIDELKRERIRCSVISLSAEIHICRYLTQQTMGTFGAVLDDAHYRDQLLS 237
Query: 246 HAPPPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGYTCPR 294
PPPA A+ +LI+MGFP E +S+C CH E G+ CP+
Sbjct: 238 QVDPPPA-AKTQDNSLIRMGFPHSKNEVEGKDAPLSMCMCHIENLDEPSELSTTGHHCPQ 296
Query: 295 CKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCL--NDPRNRSRSTCF 352
C ++ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E++ + P S C+
Sbjct: 297 CNSKYCELPVECQCCGLTLVSAPHLARSYHHLFPVPNFEELSYDMVPPASPDCGSLRKCY 356
Query: 353 GCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
C + L +K C C + FC++CDI+IHE+LH C GC ++
Sbjct: 357 ACIKVLNPVTDKS--VFKCGYCNQFFCIDCDIFIHETLHACVGCNTI 401
>gi|207343219|gb|EDZ70748.1| YLR005Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 371
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 150/339 (44%), Positives = 205/339 (60%), Gaps = 18/339 (5%)
Query: 72 RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 131
RSL+ T + E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++
Sbjct: 34 RSLILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVS 93
Query: 132 DLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 189
+ G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST D
Sbjct: 94 QVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTD 153
Query: 190 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIME 245
PGDI +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL E
Sbjct: 154 PGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNE 213
Query: 246 HAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTD 305
P P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT
Sbjct: 214 AVTPLPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTV 272
Query: 306 CRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNK 364
C C L L+ S HLARSYHHL P+ F EV + RS CF CQ + +K
Sbjct: 273 CPCCDLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKNHK 327
Query: 365 PGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 328 NGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 366
>gi|440631747|gb|ELR01666.1| hypothetical protein GMDG_00042 [Geomyces destructans 20631-21]
Length = 491
Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 223/403 (55%), Gaps = 43/403 (10%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTAR 80
AWE RSW+ + E G L + +R LRD R L+
Sbjct: 60 AWEDI---QRSWDTVVEGADGSLSSTVEGLLEAGKRQRLLRDTTPLQRGIIRHLILILDL 116
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
E D RP+R + + +F+ EFF+QNP+SQ+G++ ++DG+A ++ L G+P H
Sbjct: 117 SFAMTEKDLRPTRYLLTLRHATSFISEFFEQNPISQLGILGMRDGLAKPISPLSGTPTVH 176
Query: 141 IKALMGKLGCS---GDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
+ AL GKL G SLQNAL++ + L PS+G REVLI+ AL + DPGDI TI
Sbjct: 177 LGAL-GKLRTQDPQGSPSLQNALEMARASLFHAPSHGTREVLIISGALLSSDPGDIHTTI 235
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA-EF 256
+IR S IGL+A++ I +C T G YSVAL E HF+ L+M PPP A E
Sbjct: 236 SSLTSDRIRVSAIGLAAQVAILSEICTKTKGDYSVALHEEHFRALLMGATTPPPTRAKEQ 295
Query: 257 AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSS 316
++L+ MGFP R ++++C+CH ++ G GY C RC ++VC LP +C CGL L+ S
Sbjct: 296 NQSSLLMMGFPSRTVATAVTLCACHSKLTRG-GYLCSRCGSKVCSLPAECPACGLTLILS 354
Query: 317 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC---------------------Q 355
HLARSYHHLFP+ + EV+ ++ +CF C +
Sbjct: 355 THLARSYHHLFPLRNWREVS---WSEAAGSGVGSCFACGVGFNKPPPRQVVEGKKEGGRR 411
Query: 356 QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
++++ + ++ G Y AC C +HFC++CD++ HE +HNCPGC+S
Sbjct: 412 EAMMKAVSESGRY-ACEVCGEHFCIDCDVFAHEVVHNCPGCQS 453
>gi|342888788|gb|EGU88007.1| hypothetical protein FOXB_01490 [Fusarium oxysporum Fo5176]
Length = 468
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 171/423 (40%), Positives = 232/423 (54%), Gaps = 57/423 (13%)
Query: 30 AWERSYADDRSWEA-LQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTA 79
AWE S R+WE L E+E G L +A + +R LRD R +V
Sbjct: 45 AWEVS---KRTWETNLPEEEDGIL---SLTALEAEKRKRLLRDTTPLQRGIIRHMVLVLD 98
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
E D P+R ++ AFVREFF+QNP+SQ+G++ ++DGVA ++D+GG+P
Sbjct: 99 MSFAMTEKDLLPTRYRLMLSYAAAFVREFFEQNPISQLGIIGMRDGVAVRISDVGGNPTE 158
Query: 140 HIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
H++ L G G+ SLQNAL++ +G L PS+G REVLI+Y AL + DPGDI ETI
Sbjct: 159 HLEKLKGLENEDPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSSDPGDIHETI 218
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPA- 252
+IR S++GLSA++ IC LC T Y++A+DE HF+EL + PP
Sbjct: 219 GNLITDRIRVSIVGLSAQVAICADLCSRTNAGDESQYNIAMDEVHFRELFLAATTPPVTR 278
Query: 253 IAEFAIANLIKMGFPQRA--GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICG 310
AE + A+L+ MGFP R G+ S C+CH GY C RC ARVC +P +C C
Sbjct: 279 TAEQSTASLLMMGFPSRTLVPNGTTSYCACHNR-PFREGYLCTRCGARVCRIPAECPACD 337
Query: 311 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS-TCFGC-------------Q 355
L L+ S HLARSYHHLFP+ + EV P + SRS CF C
Sbjct: 338 LTLILSTHLARSYHHLFPLRNWVEV-------PWTKASRSAACFSCLAPFPEPPKGKAPD 390
Query: 356 QSLLSSG--------NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVA 407
+S SG ++ G Y AC C +HFC++CD++ HE +HNCPGC+SL A
Sbjct: 391 KSREDSGAPKTAKGVSESGRY-ACEVCGQHFCIDCDVFAHEVVHNCPGCQSLLSKTDAAA 449
Query: 408 NEG 410
+ G
Sbjct: 450 SSG 452
>gi|50551723|ref|XP_503336.1| YALI0D26862p [Yarrowia lipolytica]
gi|49649204|emb|CAG81542.1| YALI0D26862p [Yarrowia lipolytica CLIB122]
Length = 496
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 164/406 (40%), Positives = 226/406 (55%), Gaps = 39/406 (9%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
NGG +WE Y RSW+ +QEDE G L + A+ +R ++D R+L+
Sbjct: 44 NGGY-SWEDEY--HRSWDVVQEDEGGSLAG-SVAGLVEARKKRHIKDATPFQRGIIRNLI 99
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
E D RP+R V FV FFDQNP+SQ+G++ +++G A ++ LG
Sbjct: 100 LVLDFSFAMKESDLRPNRYQFVINHAIEFVTNFFDQNPISQLGILGMRNGQAISISTLGS 159
Query: 136 SPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P HI AL KL GD SLQNAL++ +GLL +PS+ +EVL++ AL + DPGDI
Sbjct: 160 NPNDHINALTAAKKLEPQGDPSLQNALEMARGLLFHVPSHCTKEVLVVLGALLSADPGDI 219
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDT----GGSYSVALDESHFKELIMEHAPP 249
TI K K+R VIGL+A++ ICK LC T Y V L+E HF+EL+ E P
Sbjct: 220 HVTIDKLVIDKVRARVIGLAAQVAICKELCVKTNFGDASYYGVVLNEQHFQELMDEATTP 279
Query: 250 PPAIAEFAIAN---LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDC 306
+ AN L+ MGFP + E + S+ + + G GY CP+CK +V LPT C
Sbjct: 280 LAESQQSQSANPASLVLMGFPSKVSEAAPSLSASDAALTQG-GYVCPQCKVKVSSLPTVC 338
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ----------Q 356
CGL L+ S HLARSYHHLFP+APF EV C N ++ C GCQ +
Sbjct: 339 PCCGLTLILSTHLARSYHHLFPLAPFIEVP--CKNAHKSE---FCAGCQSKFPVVARDAK 393
Query: 357 SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHS 402
++ + G+ Y CP C HFC++CD++ HE LHNC GC++ +S
Sbjct: 394 NIQADGSMTSRY-ECPTCHSHFCIDCDVFCHEILHNCIGCQARSYS 438
>gi|195160565|ref|XP_002021146.1| GL24973 [Drosophila persimilis]
gi|194118259|gb|EDW40302.1| GL24973 [Drosophila persimilis]
Length = 445
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/408 (37%), Positives = 230/408 (56%), Gaps = 33/408 (8%)
Query: 20 EDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD-------- 71
+DD + WE Y +++WEA+++DE G L A+ +R+ +
Sbjct: 3 DDDRDDQKEYRWETGY--EKTWEAIKDDEDGLLDGAIADIIQKAKRQRQAQKTKQNRLGM 60
Query: 72 -RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 130
R L + + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K A +
Sbjct: 61 MRHLFIILDCSESMSVPDLKPTRLRCTIKLLEQFIEEFFDQNPISQMGIIALKAKRAEKI 120
Query: 131 TDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
T+L G+ H+KAL G + + + SLQN LDL L +PS+ RE++I+ +L+TC
Sbjct: 121 TELTGTSRVHLKALEGLANVPLTSEPSLQNGLDLALKTLKVVPSHASREIVIVMGSLTTC 180
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DP DI TI + K+ IRCSVI LSAE+ I ++L Q T G++ LD++HF++ +M
Sbjct: 181 DPVDINLTIDELKKEGIRCSVISLSAEIHIARYLTQQTRGTFGAVLDDAHFRDQLMSQVD 240
Query: 249 PPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGYTCPRCKA 297
PPPA A+ +LI+MGFP E +S+C CH E G+ CP+C +
Sbjct: 241 PPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELCTTGHHCPQCNS 299
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCLND--PRNRSRSTC 351
+ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P +D + C
Sbjct: 300 KYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEEIPFDSLPKASSDRGGTGTGTTEC 359
Query: 352 FGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
+ C + + +K C CK+ FCL+CDI+IH++LH C GC ++
Sbjct: 360 YACMKLFVPVADK--TVFKCGFCKQFFCLDCDIFIHDTLHACVGCNTI 405
>gi|452846260|gb|EME48193.1| hypothetical protein DOTSEDRAFT_69968 [Dothistroma septosporum
NZE10]
Length = 449
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 163/435 (37%), Positives = 233/435 (53%), Gaps = 54/435 (12%)
Query: 17 EEDEDDNLNGGLEAWERSYADDRS-WEA-------LQEDESGFLRPIDNSAFYHAQYRRR 68
E D+ D + G + R +++ WEA QE G + + A+ +R
Sbjct: 7 ELDDGDGPSMGTQMASRPKGREKARWEASANSKLAYQEAAGGSIEDVLGGREEAAKRKRL 66
Query: 69 LRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGL 119
+D R LV + E D RP+R + +AFVREF +QNP+SQ+G+
Sbjct: 67 TKDTTPLQRGIIRHLVLLLDFSEAMMEKDLRPTRYLLTLTYAKAFVREFIEQNPISQLGI 126
Query: 120 VTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHRE 177
V +KDG+A ++D+ G+PE HIK L K +G+ SLQN LD+ + L PS+G RE
Sbjct: 127 VGMKDGLAIRVSDMSGNPEDHIKILNEYAKKEPTGNPSLQNGLDMARAALYHTPSHGTRE 186
Query: 178 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVA 233
VL++ AL T DPGDI +TI+ C + +IR S+IGL+A+M IC +C+ T Y+VA
Sbjct: 187 VLVVMGALLTSDPGDIHDTIKACIKDRIRVSIIGLAAQMHICAEICRKTNQGDESCYNVA 246
Query: 234 LDESHFKELIMEHAPPPPAIAEFA------IANLIKMGFPQRAGEGSISICSCHKEVKVG 287
+D+ F+EL+M+ PP + A ANL+ MGFP R E ++C+CH ++ G
Sbjct: 247 IDDVDFRELLMKSTTPPVMRSTDADALRLNQANLLMMGFPSRIVEDKATLCACHGQLTRG 306
Query: 288 VGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRS 347
GY C RC A+VC LP C C L L+ S HLARSYHHLFP+ + EV+ + R +
Sbjct: 307 -GYLCSRCGAKVCSLPATCPTCDLTLILSTHLARSYHHLFPLQNWVEVS---WDRARRKG 362
Query: 348 RSTCFGC-----------QQSLLSSGNKPGLYVA----------CPKCKKHFCLECDIYI 386
C+GC + + L +KP A C C+ HFC++CD+
Sbjct: 363 SVQCYGCLAGFPRVPVEYETTQLEVRDKPRRRRAEGASESSRYECETCQNHFCIDCDVAA 422
Query: 387 HESLHNCPGCESLRH 401
HE +HNCPGC S H
Sbjct: 423 HEMIHNCPGCMSNAH 437
>gi|400594628|gb|EJP62466.1| TFIIH basal transcription factor complex p47 subunit , putative
[Beauveria bassiana ARSEF 2860]
Length = 503
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 169/419 (40%), Positives = 230/419 (54%), Gaps = 64/419 (15%)
Query: 29 EAWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVA 76
+AWE+S R+WE +E E G L + A+ RRRLR R L+
Sbjct: 70 QAWEKS---KRTWETDLPEEGEDGTL----DLTTLEAEKRRRLRRDTTPLQRGIIRHLML 122
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
A+ D P+R + + AFVREFF+QNP+SQ+G+V ++DGVA ++DLGG+
Sbjct: 123 VLDMSFAMADKDMLPTRHRLTLRYAAAFVREFFEQNPISQLGIVGMRDGVAVRISDLGGN 182
Query: 137 PESHI---KALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
P H+ KAL G+ G+ SLQNAL++ +G L PS+G REVLI+Y AL + DPGDI
Sbjct: 183 PAEHLERLKALEGQ-DPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSSDPGDI 241
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPP 249
+T+ +IR S++GLSA + IC LC T Y+VA+DE HF+EL + P
Sbjct: 242 HDTMTNLISDRIRVSIVGLSAHLSICAELCSRTNAGDTSQYNVAMDEVHFRELFLAATTP 301
Query: 250 P-PAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDC 306
P E + A+L+ MGFP R A G++S C+CH + G+ C RC +RVC LP +C
Sbjct: 302 PITRTQEQSTASLLMMGFPSRVLAPGGAVSYCACHNK-PCREGFLCTRCGSRVCRLPAEC 360
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS-TCFGCQ---------- 355
CGL L+ S HLARSYHHLFP+ + EV P N ++S CF CQ
Sbjct: 361 PACGLTLILSTHLARSYHHLFPLRNWVEV-PWA-----NAAQSAACFACQCPFSAPPRTV 414
Query: 356 ----------------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
+ L + G AC C HFC++CD+Y HE +HNCPGC+S
Sbjct: 415 EGGVNGEKHADTQETGRRLAAKGVSESGRYACEVCGNHFCIDCDVYAHEVIHNCPGCQS 473
>gi|259481102|tpe|CBF74326.1| TPA: component of the core form of RNA polymerase transcription
factor TFIIH (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 455
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 223/395 (56%), Gaps = 38/395 (9%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARIQKAAEMDF 89
R+WE L E G + ++ +R L+D R ++ Q E D
Sbjct: 48 RTWETLVEGADGTISSTVGGLLEASKRKRLLKDTTPLQRGIIRHIILILDLSQSMMEKDL 107
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGK 147
RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ +
Sbjct: 108 RPTRYLLTLRYAQEFVREFFEQNPISQVGVIGLRDGLALRISDMSGNPTEHISAIQDLRS 167
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 207
G SLQN L++ +G L PS+G RE+ I++ +L + DPGDI +TI + KIR
Sbjct: 168 QDPKGLPSLQNGLEMARGALFHTPSHGTREIFIVFGSLLSSDPGDIHQTITTLIDDKIRV 227
Query: 208 SVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAEF-AIANLI 262
++GL+A++ IC+ LC T G Y VAL+E HF+EL++ PP ++ + ++L+
Sbjct: 228 GIVGLAAQVAICRELCSRTNGGDDTYYGVALNEQHFRELMLAVTTPPATYSQKQSASSLL 287
Query: 263 KMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS 322
MGFP R E S+C+CH G GY C RC ++VC LP +C CGL L+ S HLARS
Sbjct: 288 MMGFPSRTIESFPSLCACHSNPTPG-GYLCSRCNSKVCGLPAECPSCGLTLILSTHLARS 346
Query: 323 YHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----------QQSLLSSGNKPGLYVA-- 370
YHHLFP+ + EV+ R +TCF C +Q + G+ V+
Sbjct: 347 YHHLFPLMNWVEVSW-----ERAHRSTTCFACGIAFPTIPPKEQWQATQNLAKGMSVSSR 401
Query: 371 --CPKCKKHFCLECDIYIHESLHNCPGCES--LRH 401
C C+ HFC++CD++ HE +HNCPGC+S +RH
Sbjct: 402 YECTVCENHFCIDCDLFAHEVVHNCPGCQSRVVRH 436
>gi|198464821|ref|XP_001353376.2| GA10767 [Drosophila pseudoobscura pseudoobscura]
gi|198149896|gb|EAL30883.2| GA10767 [Drosophila pseudoobscura pseudoobscura]
Length = 445
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 151/408 (37%), Positives = 230/408 (56%), Gaps = 33/408 (8%)
Query: 20 EDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD-------- 71
+DD + WE Y +++WEA+++DE G L A+ +R+ +
Sbjct: 3 DDDRDDQKEYRWETGY--EKTWEAIKDDEDGLLDGAIADIIQKAKRQRQAQKTKQNRLGM 60
Query: 72 -RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 130
R L + + D +P+R+ K ++ F+ EFFDQNP+SQ+G++ +K A +
Sbjct: 61 MRHLFIILDCSESMSVPDLKPTRLRCTIKLLDQFIEEFFDQNPISQMGIIALKAKRAEKI 120
Query: 131 TDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
T+L G+ H+KAL G + + + SLQN LDL L +PS+ RE++I+ +L+TC
Sbjct: 121 TELTGTSRVHLKALEGLANVPLTSEPSLQNGLDLALKTLKVVPSHASREIVIVMGSLTTC 180
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DP DI TI + K+ IRCSVI LSAE+ I ++L Q T G++ LD++HF++ +M
Sbjct: 181 DPVDINLTIDELKKEGIRCSVISLSAEIHIARYLTQQTRGTFGAVLDDAHFRDQLMSQVD 240
Query: 249 PPPAIAEFAIANLIKMGFPQRAGE-----GSISICSCHKE------VKVGVGYTCPRCKA 297
PPPA A+ +LI+MGFP E +S+C CH E G+ CP+C +
Sbjct: 241 PPPA-AKTQHNSLIRMGFPHTKNEVEGKDAPLSMCMCHIENLEEPSELCTTGHHCPQCNS 299
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV----TPLCLND--PRNRSRSTC 351
+ CELP +C+ CGL LVS+PHLARSYHHLFP+ F+E+ P +D + C
Sbjct: 300 KYCELPVECQSCGLTLVSAPHLARSYHHLFPVPNFEEIPFDSLPKASSDRGGTGTGTTEC 359
Query: 352 FGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
+ C + + +K C CK+ FCL+CDI+IH++LH C GC ++
Sbjct: 360 YACMKLFVPVADK--TVFKCGFCKQFFCLDCDIFIHDTLHACVGCNTI 405
>gi|346464883|gb|AEO32286.1| hypothetical protein [Amblyomma maculatum]
Length = 448
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/358 (41%), Positives = 218/358 (60%), Gaps = 27/358 (7%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD------- 71
DE+D G WE Y +R+WEA+QEDESG L+P + A+ ++ L
Sbjct: 3 DEED---GKGYRWETEY--ERTWEAIQEDESGLLQPSVLDFVHRAKRKQMLAKKNVRLGM 57
Query: 72 -RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 130
R L + AE D +P+R+ K +E FV EFFDQNP+S +G+++ + A L
Sbjct: 58 MRHLYIVVDFSEAMAEPDLKPTRLICTLKMLELFVEEFFDQNPISNVGVISTCNKRAQKL 117
Query: 131 TDLGGSPESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
+L G+ ++AL SG+ SLQN+L+L +L +P + REVLI+ +L+TC
Sbjct: 118 CELAGNTGKVVEALKSCKTQVPSGEPSLQNSLELAAEVLRHLPVHTSREVLIIMGSLTTC 177
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DPG+I TI+ ++ IRCS++GL+AE+++C L + TGG+Y+V LDE+HFK+++ +HA
Sbjct: 178 DPGNIQTTIETMRKCNIRCSIVGLAAEVYVCCRLTKTTGGTYNVILDENHFKDILFQHAI 237
Query: 249 PPPAIAEFAIANLIKMGFP--QRAGEGSISICSCHKEVK------VGVGYTCPRCKARVC 300
PPP A ++LI+MGFP + EG S+C CH + + GY CP+C + C
Sbjct: 238 PPPVTGN-AESSLIRMGFPYHRTETEGKPSLCFCHLDSQNPSDGLSKGGYFCPQCNGKYC 296
Query: 301 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 358
LP +C++CGL LVS+PHLARSYHHLF + PFDEV P L P + + TCF CQ S+
Sbjct: 297 TLPVECKVCGLTLVSAPHLARSYHHLFALEPFDEVPPDTL--PAD-TPVTCFACQVSI 351
>gi|195440790|ref|XP_002068223.1| GK12882 [Drosophila willistoni]
gi|194164308|gb|EDW79209.1| GK12882 [Drosophila willistoni]
Length = 454
Score = 274 bits (700), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 224/391 (57%), Gaps = 33/391 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +++WEA++ED+ G L A+ +R+L R +
Sbjct: 11 WETGY--EKTWEAIKEDDDGMLDGAIADIIQKAKRQRQLEKTKQNRLGMMRHVFLVIDCS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K A +T+L G+ H+
Sbjct: 69 ESMSVPDLKPTRLRCTLKLLEIFIDEFFDQNPISQLGIIALKAKRAEKITELTGTSRVHL 128
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
KAL + + + + SLQN LD+ L +PS+ RE++I+ +L+TCDP DI TI +
Sbjct: 129 KALESLANVVLTSEPSLQNGLDMALKTLKVVPSHASREIVIIMGSLTTCDPVDINLTINE 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K+ IRCSVI LSAE+ + ++L ++T GSY LD++HF++ ++ PPPA A+
Sbjct: 189 LKKEGIRCSVISLSAEIHVARYLAKETMGSYGAVLDDAHFRDQLLSQVDPPPA-AKTQHN 247
Query: 260 NLIKMGFPQRAG------EGSISICSCHKEVK------VGVGYTCPRCKARVCELPTDCR 307
+LI+MGFP + +S+C CH E G+ CP+C ++ CELP +C+
Sbjct: 248 SLIRMGFPHSTSNEADGKDAPLSMCMCHIENVDEPSELSTTGHYCPQCHSKYCELPVECQ 307
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
C L LVS+PHLARSYHH+FP+ F+E+ L P + CF C + L + +K
Sbjct: 308 SCDLTLVSAPHLARSYHHIFPVPNFEEMPHDQLPGP-----TECFSCAKLLATVADK--T 360
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGCES 398
C C + FCL+CDI+IHE+LH C GC S
Sbjct: 361 VYKCIHCGEVFCLDCDIFIHETLHACVGCNS 391
>gi|347831479|emb|CCD47176.1| similar to transcription factor Zn, C2H2 [Botryotinia fuckeliana]
Length = 478
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 156/408 (38%), Positives = 229/408 (56%), Gaps = 42/408 (10%)
Query: 25 NGGLEAWERSYAD-DRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSL 74
NGG + ++ D RSW+ + E G + + +R LRD R
Sbjct: 49 NGGGNRRKAAWEDIQRSWDTVVEGADGSINSTVEGLREANKRKRLLRDTTPLQRGIIRHF 108
Query: 75 VATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ E D RP+R + + FV E+F+QNP+SQ+G++ ++DG+A ++D+
Sbjct: 109 ILILDLSFAMTEKDMRPTRYLLTIRYASEFVTEYFEQNPISQLGIIGMRDGIAVRISDMS 168
Query: 135 GSPESHI---KALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 191
G+P HI KAL G G+ SLQNAL++ + L PS+G RE+LI+Y AL + DPG
Sbjct: 169 GNPTEHIERLKALRVDQG-QGNPSLQNALEMSRAALFHAPSHGTREILIIYGALLSSDPG 227
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHA 247
DI ETI +IR S++GL+A++ IC LC T +YSVAL+E HF++L+M
Sbjct: 228 DIHETISSLITDRIRVSIVGLAAQVAICAELCSRTNAGDDTAYSVALNEEHFRQLMMATT 287
Query: 248 PPPPA-IAEFAIANLIKMGFPQRAGE--GSISICSCHKEVKVGVGYTCPRCKARVCELPT 304
PP + + ++L+ MGFP R + S+S C+CH ++ G GY C RC+++VC LP
Sbjct: 288 TPPVTRTKKQSQSSLLMMGFPSRTLDPGKSMSFCACHGKLSRG-GYLCSRCESKVCSLPA 346
Query: 305 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL------ 358
+C CGL L+ S HLARSYHHLFP+ + EV L +S+ C+GCQ +
Sbjct: 347 ECPACGLTLILSTHLARSYHHLFPLRNWAEV----LWKDAGKSKG-CYGCQVTFPQRDEH 401
Query: 359 --------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
L ++ G Y AC C HFC++CD++ HE +HNCPGC+S
Sbjct: 402 EKSASEQPLKGMSESGRY-ACEVCGNHFCIDCDVFAHEVVHNCPGCQS 448
>gi|212537907|ref|XP_002149109.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
marneffei ATCC 18224]
gi|210068851|gb|EEA22942.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
marneffei ATCC 18224]
Length = 453
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/442 (35%), Positives = 240/442 (54%), Gaps = 46/442 (10%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLEAWER------SYADDRSWEALQEDESGFLRP 54
M +S+ + + +E+E + + G + + ++ R+WE++ E G +
Sbjct: 1 MADSDEEYVGSGSEDEIDAHIVSSGAGTRSTRKKQRGGATFEVSRTWESVVEGADGTISS 60
Query: 55 IDNSAFYHAQYRRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFV 105
+ +R LRD R L+ Q AE D RP+R + + + FV
Sbjct: 61 TVEGLLEAGKRKRLLRDTTPLQRGIIRHLILVLDLSQSMAEKDIRPTRYLLALRYAQEFV 120
Query: 106 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLV 163
EFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ + G SLQNAL++
Sbjct: 121 IEFFEQNPISQLGVIGMRDGLAVRISDMSGNPTDHITAIHALRPDDPKGLPSLQNALEMA 180
Query: 164 QGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLC 223
+G L PS+G REVLI++ +L + DPGDI +T++ KIR ++GL+A++ IC+ LC
Sbjct: 181 RGALFHTPSHGTREVLIVFGSLLSSDPGDIHQTLKSLIADKIRVGIVGLAAQVAICRELC 240
Query: 224 QDTGGS----YSVALDESHFKELIMEHAPPPPAIA-EFAIANLIKMGFPQRAGEGSISIC 278
T G Y VAL+E HF+EL+M+ PP A + + + L+ MGFP R E S+C
Sbjct: 241 AKTNGGDDSVYGVALNEQHFRELMMDVTIPPAAYSYRKSSSALLMMGFPSRTVESFPSLC 300
Query: 279 SCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPL 338
+CH + G GY C RC +VC LP +C CGL L+ S HLARSYHHLFP+ + EV
Sbjct: 301 ACHSKPSCG-GYLCSRCGNKVCGLPAECPSCGLTLILSTHLARSYHHLFPLINWVEV--- 356
Query: 339 CLNDPRNRS-RST-CFGC--QQSLLSSGNKPGLY------------VACPKCKKHFCLEC 382
P R+ RST C+ C Q + ++ G + C C HFC++C
Sbjct: 357 ----PWKRALRSTNCYACGIQFPTVPPADQWGAFENQAKGMSVSSRYECSACHNHFCIDC 412
Query: 383 DIYIHESLHNCPGCESLRHSNP 404
D++ HE +HNCPGC+S P
Sbjct: 413 DLFAHEIVHNCPGCQSTNFMKP 434
>gi|156050059|ref|XP_001590991.1| hypothetical protein SS1G_07615 [Sclerotinia sclerotiorum 1980]
gi|154692017|gb|EDN91755.1| hypothetical protein SS1G_07615 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 479
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 158/408 (38%), Positives = 230/408 (56%), Gaps = 42/408 (10%)
Query: 25 NGGLEAWERSYAD-DRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSL 74
NGG ++ D RSW+ + E G + + +R LRD R L
Sbjct: 49 NGGGNRRRAAWEDIQRSWDTVVEGADGSINSAVEGLREANKRKRLLRDTTPLQRGIIRHL 108
Query: 75 VATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ E D RP+R + + FV E+F+QNP+SQ+G++ ++DG+A ++D+
Sbjct: 109 ILILDLSFSMTEKDMRPTRYLLTLRYASEFVTEYFEQNPISQLGIIGMRDGIAVRISDMS 168
Query: 135 GSPESHI---KALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 191
G+P HI K+L G G+ SLQNAL++ + L PS+G RE+LI+Y AL T DPG
Sbjct: 169 GNPTEHIERLKSLRVDQG-QGNPSLQNALEMSRAALFHAPSHGTREILIIYGALLTSDPG 227
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHA 247
DI ETI +IR S++GL+A++ IC +C T +YSVAL+E HF++L+M
Sbjct: 228 DIHETISSLIADRIRVSIVGLAAQVAICAEICSRTNAGDDTAYSVALNEEHFRQLMMATT 287
Query: 248 PPPPA-IAEFAIANLIKMGFPQRA-GEG-SISICSCHKEVKVGVGYTCPRCKARVCELPT 304
PP + + ++L+ MGFP R G G S+S C+CH ++ G GY C RC ++VC LP
Sbjct: 288 TPPVTRTKKQSHSSLLMMGFPSRTLGPGKSMSFCACHGKLSRG-GYLCSRCGSKVCSLPA 346
Query: 305 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL------ 358
+C CGL L+ S HLARSYHHLFP+ + EV L ++R+ C+GCQ
Sbjct: 347 ECPACGLTLILSTHLARSYHHLFPLRNWVEV----LWKDAGKTRA-CYGCQAPFPRRDEH 401
Query: 359 --------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
L S ++ G Y AC C HFC++CD++ H+ +HNCPGC+S
Sbjct: 402 EKGAPEPGLKSMSESGRY-ACEVCGNHFCIDCDVFAHDVVHNCPGCQS 448
>gi|291224884|ref|XP_002732433.1| PREDICTED: general transcription factor IIH, polypeptide 2, 44kD
subunit-like [Saccoglossus kowalevskii]
Length = 593
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/346 (42%), Positives = 206/346 (59%), Gaps = 39/346 (11%)
Query: 22 DNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARI 81
D+ N WE Y +R+WEA++EDE+G L+ + + H RRRL DR
Sbjct: 2 DDENEKTYIWEGDY--ERTWEAIKEDETGSLQTVVDDIL-HRTKRRRLLDRPANV----- 53
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
R+ ++ +E F+ E+FD NP+SQ+G++T + AN LT+LGG+P+ HI
Sbjct: 54 -----------RLGML---LEHFLEEYFDHNPISQVGILTTSNKRANRLTELGGNPKRHI 99
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
AL C + SLQNAL+L L +P + REVL++ +L+TCDPG+I +TI+
Sbjct: 100 AALQKCVDKQCLKEPSLQNALELAATTLRHVPGHASREVLVILGSLTTCDPGNIHDTIKS 159
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K+ IRCSVIGLSA++ +CK LC +T GSYSV LDE HFKE+++EH PP A A +
Sbjct: 160 MKDLNIRCSVIGLSADVRVCKRLCSETQGSYSVILDEPHFKEVLLEHIKPPLATASTE-S 218
Query: 260 NLIKMGFPQRAGEGSI------SICSCHKEVKVGV-----GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ S+C CH + K GY CP+CK++ CELP +C+
Sbjct: 219 SLIRMGFPQHQLHAEKDKLEKPSMCMCHLDSKSTQGFSTGGYFCPQCKSKYCELPIECKA 278
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC 354
CGL LVS+PHLARS+HHLFP+ F E+ L+D + C C
Sbjct: 279 CGLTLVSAPHLARSFHHLFPLESFQEIQ---LSDLQESDSRVCLSC 321
>gi|254577733|ref|XP_002494853.1| ZYRO0A11176p [Zygosaccharomyces rouxii]
gi|238937742|emb|CAR25920.1| ZYRO0A11176p [Zygosaccharomyces rouxii]
Length = 477
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/418 (38%), Positives = 230/418 (55%), Gaps = 31/418 (7%)
Query: 4 SERKRLNGEAEEEEEDEDDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
S+ + NG + + + L G G AWE RSW+ + D+ G + + S
Sbjct: 63 SKDPKRNGRSARRNKTSNKALQGASGGYAWEDEIK--RSWDLVPADDEGDMAALAASIVE 120
Query: 62 HAQYRRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQN 112
+ R ++ R+L+ + E D RP+R A++ + FV EFFDQN
Sbjct: 121 SRKKRTAQKNISPYQRGIIRTLILVLDCSEAMLEKDMRPNRHAMLVQYSIDFVHEFFDQN 180
Query: 113 PLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQI 170
P+SQIG+V++++G+A+ ++ + G+P+ H+ AL + K G+ SLQNAL++ +GLL +
Sbjct: 181 PISQIGIVSMRNGLAHMISQVSGNPQDHVDALKSIRKQEPKGNPSLQNALEMTRGLLLPV 240
Query: 171 PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG--- 227
P + +EVLI++ +LS+ DPGDI TI + IR +IGLSA++ IC+ LC+ T
Sbjct: 241 PPHCTKEVLIVFGSLSSTDPGDIHLTIGSLVQEGIRVKIIGLSAQVAICRELCKATNYGD 300
Query: 228 -GSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKV 286
Y V LDE H KEL E P P L+KMGFP R E + + C+CH ++
Sbjct: 301 ESFYKVPLDEIHCKELFAEAVTPLPVNKINKGFTLVKMGFPTRIFEEAPTFCACHSKLLY 360
Query: 287 GVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR 346
G GY CP C+++VC LP C C L L+ S HLARSYHHL P+ F EV + N
Sbjct: 361 G-GYFCPNCQSKVCSLPMVCPCCDLMLILSTHLARSYHHLMPLKTFSEVPTGQVFPTEN- 418
Query: 347 SRSTCFGCQQSLLSSGN-KPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
CF CQ + N K G + C C K FC++CD++IHE LHNCPGCES
Sbjct: 419 ----CFSCQVRFPTVKNHKTGELLTSSRYRCEDCLKDFCIDCDVFIHEILHNCPGCES 472
>gi|398406773|ref|XP_003854852.1| hypothetical protein MYCGRDRAFT_37615 [Zymoseptoria tritici IPO323]
gi|339474736|gb|EGP89828.1| hypothetical protein MYCGRDRAFT_37615 [Zymoseptoria tritici IPO323]
Length = 445
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 161/439 (36%), Positives = 232/439 (52%), Gaps = 51/439 (11%)
Query: 10 NGEAEEEEEDEDDNLNGGLEAWERSYADDR-SWEA-------LQEDESGFLRPIDNSAFY 61
+GE + D++ NGG RS + SWEA L+E G + +
Sbjct: 5 DGEYDGHGSDDEIATNGGRAMPSRSKGRAQASWEAGATRAWELKEAPDGSIEGVLGGIEE 64
Query: 62 HAQYRRRLRD-----RSLVATTARIQKAA----EMDFRPSRMAVVAKQVEAFVREFFDQN 112
++ +R L+D R ++ T + + E D RP+R + AF+REFF+QN
Sbjct: 65 ASKRKRLLKDTTPLQRGIIRHTILMLDLSVAMLEKDLRPTRHLLTITYTIAFIREFFEQN 124
Query: 113 PLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC--SGDSSLQNALDLVQGLLSQI 170
P+SQ+G++ +++G+A ++D+ G+P HI A+ G G+ SLQN LD+ + L
Sbjct: 125 PISQLGILGMREGLAIRVSDMSGNPNDHIAAVRALRGTDPKGNPSLQNGLDMARAALYHT 184
Query: 171 PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS- 229
PS+G REV+I+ AL T DPGDI +TI+ C + +IR ++IGL+A+M IC +C+ T
Sbjct: 185 PSHGTREVVIILGALLTSDPGDIHDTIKACIKDRIRVTIIGLAAQMHICAEICRKTNAGD 244
Query: 230 ---YSVALDESHFKELIMEHAPPPPAIAEFAIAN------LIKMGFPQRAGEGSISICSC 280
Y+VA+DE HF+EL+M PP + A A L+ MGFP R E ++C+C
Sbjct: 245 DNCYNVAVDEVHFRELLMGITTPPVVRSTDAEAQKLNQAALLMMGFPSRIVEEHATLCAC 304
Query: 281 HKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCL 340
H + G GY C RCKA+VC LP C C L L+ S HLARSYHHLFP+ + EV+
Sbjct: 305 HGNLTRG-GYLCSRCKAKVCSLPATCPTCDLTLILSTHLARSYHHLFPLQNWVEVS---W 360
Query: 341 NDPRNRSRSTCFGC------------------QQSLLSSGNKPGLYVACPKCKKHFCLEC 382
+R CFGC S + G C C+ HFC++C
Sbjct: 361 QRAADRGSEQCFGCLSPFPRVHGATNGDDADKTYSKRAEGASESSRYECESCQNHFCIDC 420
Query: 383 DIYIHESLHNCPGCESLRH 401
D + HE+ HNCPGC S H
Sbjct: 421 DCFNHETSHNCPGCTSSTH 439
>gi|443898092|dbj|GAC75430.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit SSL1 [Pseudozyma antarctica
T-34]
Length = 498
Score = 271 bits (693), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/409 (36%), Positives = 218/409 (53%), Gaps = 48/409 (11%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTAR 80
+WE +Y RSW+A+ ED+SG L ++ RR L+D R LV
Sbjct: 95 SWEATYK--RSWDAVAEDDSGSLESAVRQMIEGSKRRRTLKDMAPVQRGIIRHLVLLIDL 152
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
E D RP+R V + FV E+FDQNP+ Q+ ++ ++G+A L +GG+ H
Sbjct: 153 SASMLEKDMRPNRFDVTLQYAREFVNEYFDQNPIGQLSVIGTREGIAERLAMMGGNTVDH 212
Query: 141 IKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+L K L G+ SLQNAL++ + L +P+ RE+L ++ +L+TCDPG+I +TI
Sbjct: 213 TASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGNIHDTIN 272
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIA---- 254
+ IR SV+ L+AE+ + K +C TGG +SVAL+E HF + + + PPP
Sbjct: 273 TLVKDNIRVSVVHLAAEVKVFKDVCTRTGGVFSVALNEGHFHDALFDLVPPPAVDGPRKG 332
Query: 255 --------EFAIAN---LIKMGFPQR-AGEGSISICSCHKEVKVGVGYTCPRCKARVCEL 302
E + N L++M FP R + ++C+CH + G GY CPRC +VC++
Sbjct: 333 KRRAGVQEEEEVQNGVDLLQMAFPLRLPAHAAPTLCACHSRSR-GSGYLCPRCGVKVCDV 391
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC-------- 354
PTDC +CG+ +V S HLARSYHHLFP+ + V + D R+ CF C
Sbjct: 392 PTDCPVCGITIVMSTHLARSYHHLFPVPNWKAVAWEAVGD---RAEDACFSCNLQFPKKD 448
Query: 355 -------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
++L +G P C +C FCLECD ++HE LH CPGC
Sbjct: 449 DNRTAAANKALEDAGLSPSSRYRCTRCNHDFCLECDAFVHEQLHVCPGC 497
>gi|390351315|ref|XP_782325.3| PREDICTED: general transcription factor IIH subunit 2-like
[Strongylocentrotus purpuratus]
Length = 500
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 147/337 (43%), Positives = 206/337 (61%), Gaps = 28/337 (8%)
Query: 21 DDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTAR 80
DD G WE Y +R+WEALQEDE G L+ + A+ RRRL DR
Sbjct: 3 DDEPEKGY-TWEGDY--ERTWEALQEDEEGSLQATVDDIIQRAK-RRRLEDRPSNVRLGM 58
Query: 81 IQ----------KAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 130
++ + D +P+R+A K +E F+ E+FDQNP+SQ+G++T + A L
Sbjct: 59 MRHLFILLDCSRSMEDQDLKPNRLACCTKLLEHFIEEYFDQNPISQVGIITSSNMRAEKL 118
Query: 131 TDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
T+LGG+P+ HI AL C + SLQNAL+L L +P + RE+L++ +L+TC
Sbjct: 119 TELGGNPQRHITALEKCNDKPCVKEPSLQNALELAAATLRHMPGHASREILVIMGSLTTC 178
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAP 248
DPG+I +TIQ K+ IRC VIGL+A++ +C+ L T G+Y V LDE+HFKEL+MEH
Sbjct: 179 DPGNIHDTIQAMKDHSIRCCVIGLAADVRVCRKLATVTHGTYGVILDETHFKELLMEHTI 238
Query: 249 PPPAIAEFAIANLIKMGFPQ------RAGEGSISICSCHKEVK----VGV-GYTCPRCKA 297
PPPA + I+MGFPQ ++ + S+C CH + K G GY CP+C++
Sbjct: 239 PPPARVNTE-PSPIRMGFPQHVIHTDKSKVSAPSMCMCHLDGKNSEGFGTGGYFCPQCQS 297
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDE 334
+ CELP +CR+CGL LVS+PHLARS+HHLFP+ F+E
Sbjct: 298 KYCELPVECRVCGLTLVSAPHLARSFHHLFPLDRFEE 334
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 306 CRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP 365
C GL LVS+PHLARS+HHLFP+ F+E D + C GCQ + +
Sbjct: 397 CLSSGLTLVSAPHLARSFHHLFPLDRFEEFK---REDHDHPDSLFCQGCQSHI-----RD 448
Query: 366 GLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSN 403
CPKC FCL+C+++I ESLH+CPGC S R S
Sbjct: 449 QTAYRCPKCSNVFCLDCELFIQESLHSCPGCASTRPSQ 486
>gi|196007624|ref|XP_002113678.1| hypothetical protein TRIADDRAFT_57351 [Trichoplax adhaerens]
gi|190584082|gb|EDV24152.1| hypothetical protein TRIADDRAFT_57351 [Trichoplax adhaerens]
Length = 353
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 142/346 (41%), Positives = 203/346 (58%), Gaps = 35/346 (10%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS----- 73
D+ D++ G WE S+ +R+WE L EDE G L+ + +RR+ DR
Sbjct: 3 DDADDVESGYR-WESSF--ERTWEVLVEDEQGSLKSTVDE--LQRARKRRVADRKANVRL 57
Query: 74 -----LVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 128
+ + +D +P+R+ K ++ F+ E+FDQNP+SQ+G++ ++ A
Sbjct: 58 GLMRHMYIIVDMSSAISIIDLKPNRLVATVKLLDDFITEYFDQNPISQLGVIITRNKRAE 117
Query: 129 CLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALS 186
LTD+GG+P HI AL C G+ SLQNAL+L L +PS+ RE+L++Y++L+
Sbjct: 118 KLTDIGGNPRRHIAALRQAACKPCIGEPSLQNALELASQTLRHVPSHASREILVIYASLT 177
Query: 187 TCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEH 246
+CDP DI T++ E IRCS IGLSAEM+I K L +TGGSY V LDE H+KEL+ +
Sbjct: 178 SCDPSDIHATVKNLVEDNIRCSAIGLSAEMYILKKLASETGGSYRVILDEHHYKELLTHY 237
Query: 247 APPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKV-----GVGYTCPRCKARVCE 301
PP A + ++LI+MGFP+ S+C CH + +V GY CP+CKA+ CE
Sbjct: 238 VIPPVATGKLG-SSLIRMGFPEYRTNSHPSMCQCHLDSRVVKSFSTTGYFCPQCKAKYCE 296
Query: 302 LPTDCRICG------------LQLVSSPHLARSYHHLFPIAPFDEV 335
LP +C+ICG L LVS+PHLARSY HLFP+ F+EV
Sbjct: 297 LPIECQICGKMNITTKTRNMRLSLVSAPHLARSYQHLFPLEDFEEV 342
>gi|281337668|gb|EFB13252.1| hypothetical protein PANDA_003972 [Ailuropoda melanoleuca]
Length = 364
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 150/353 (42%), Positives = 210/353 (59%), Gaps = 24/353 (6%)
Query: 57 NSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ 116
N F H R R L + + D +P+R+ K +E FV E+FDQNP+SQ
Sbjct: 13 NRVFEHHGQVRLGMMRHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQ 72
Query: 117 IGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYG 174
+G++ K A LT+L G+P HI +L + C G+ SL N+L + L +P +
Sbjct: 73 VGIIVTKSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHT 132
Query: 175 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVAL 234
REVLI++S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V L
Sbjct: 133 SREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVIL 192
Query: 235 DESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKV 286
DESH+KEL+ H PPPA + +LI+MGFPQ + S S+ +
Sbjct: 193 DESHYKELLTHHVSPPPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEP 251
Query: 287 GV---GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 343
G+ GY CP+C+A+ CELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL
Sbjct: 252 GLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----E 306
Query: 344 RNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+ C+GCQ L +YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 307 EHNGEKFCYGCQGEL----KDQHVYV-CAVCQTVFCVDCDVFVHDSLHCCPGC 354
>gi|378727991|gb|EHY54450.1| transcription initiation factor TFIIH subunit H2, variant
[Exophiala dermatitidis NIH/UT8656]
gi|378727992|gb|EHY54451.1| transcription initiation factor TFIIH subunit H2 [Exophiala
dermatitidis NIH/UT8656]
Length = 464
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/401 (36%), Positives = 222/401 (55%), Gaps = 33/401 (8%)
Query: 33 RSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARIQK 83
+++ R+W+ L E G + + +R L+D R L+
Sbjct: 36 QNFEVTRTWDLLTEGADGTITGAVEGLLEAGKRKRLLKDTTPLQRGIIRHLILIIDMSIA 95
Query: 84 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 143
E D RP+R + E+F+REFF+QNP+SQ+G+V ++DG+A ++D+ G+P +H+ A
Sbjct: 96 MMEKDLRPTRYLLTLMYTESFIREFFEQNPISQLGIVGMRDGIAVRVSDMSGNPTAHLAA 155
Query: 144 L--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCK 201
+ + K G SL+NAL++ + L PS+G REVL+++ AL T DPGDI TI
Sbjct: 156 IQKIRKQEPKGQPSLENALEMARAALFHAPSHGTREVLLIFGALHTSDPGDIHRTIDNLV 215
Query: 202 ESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIME-HAPPPPAIAEF 256
KIR +VIGL+A++ +C L T +Y V L E H++EL+M PP + +
Sbjct: 216 TDKIRATVIGLAAQVAVCAELVSKTNNGDLSNYGVVLHEQHYRELLMAVTTPPVTSESTK 275
Query: 257 AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSS 316
+ ++L+ MGFP R E S+C+CH GY C RC +VC LP++C +CGL L+ S
Sbjct: 276 SASSLLMMGFPSRTVEDYPSLCACHTNPSRD-GYLCSRCSTKVCGLPSECPVCGLTLILS 334
Query: 317 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----------QQSLLSSGNKPG 366
HLARSYHHLFP+ + EV P RS++ CF C +Q + G
Sbjct: 335 THLARSYHHLFPLVNWLEV-PW---SQAYRSKA-CFACLKQFPVVPPREQWTAAKTTTSG 389
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVA 407
Y CP C HFC++CD++ HE +HNCPGC+S+R ++
Sbjct: 390 RY-ECPVCHHHFCIDCDLFAHEVVHNCPGCQSVRMQTSLMG 429
>gi|255634763|gb|ACU17743.1| unknown [Glycine max]
Length = 214
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/190 (73%), Positives = 159/190 (83%), Gaps = 15/190 (7%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK---- 83
LEAWER+YA+DRSWEALQEDESG LRPID +A YHAQYRRRLR + A TARIQK
Sbjct: 24 LEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIR 83
Query: 84 -----------AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 132
A+E DFRPSRMAV+ KQVEAF+REFFDQNPLS +GLVT+KDG+A+C+T+
Sbjct: 84 YLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITE 143
Query: 133 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
LGGSPESHIKALMGKL CSGD+SLQNAL+LV G L+QIPSYGHREVLILYSALSTCDPGD
Sbjct: 144 LGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGD 203
Query: 193 IMETIQKCKE 202
+METI + ++
Sbjct: 204 LMETIPEMQK 213
>gi|358391363|gb|EHK40767.1| hypothetical protein TRIATDRAFT_78413 [Trichoderma atroviride IMI
206040]
Length = 476
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 165/414 (39%), Positives = 230/414 (55%), Gaps = 58/414 (14%)
Query: 27 GLEAWERSYADDRSWEA-LQEDESGFLRPIDNSAFYHAQYR----------RRLRDRSLV 75
G +AWE+S R+WE L E++ G L N A Y A+ R +R R LV
Sbjct: 46 GSKAWEQS---KRTWETDLPEEDDGML----NLAGYEAERRRRLLRDTTPLQRGIIRHLV 98
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
AE D P+R + AFVRE+F+QNP+SQ+G+V ++DGVA ++D+GG
Sbjct: 99 LVLDMSFAMAEKDLLPTRHRLTLSYAAAFVREYFEQNPISQLGIVGMRDGVAVRISDMGG 158
Query: 136 SPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P H++ L G G+ SLQNAL++ +G L PS+G REVLI+Y AL + DPGDI
Sbjct: 159 NPAEHLERLRDLEGQDPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSSDPGDI 218
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPP 249
+TI +IR SV+GLSA++ IC LC T Y+VA+DE+H++EL + P
Sbjct: 219 HDTIGNLIADRIRVSVVGLSAQVAICAELCSRTNAGDESQYNVAMDETHYRELFLAATTP 278
Query: 250 P-PAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDC 306
P E + ++L+ MGFP R A G+ S C+CH + GY C RC A+VC LP++C
Sbjct: 279 PVNRTKEQSTSSLLMMGFPSRTLAPGGTTSYCACHSK-PCREGYLCTRCSAKVCRLPSEC 337
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQ--------- 355
CGL L+ S HLARSYHHLFP+ + EV P + + CF CQ
Sbjct: 338 PACGLTLILSTHLARSYHHLFPLRNWVEV-------PWAEATQSIACFSCQTFFPEPPKS 390
Query: 356 -----------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
++L ++ G Y C C HFC++CD++ H +HNCPGC+S
Sbjct: 391 IKDKGKDEAPAKALAKGVSESGRY-KCQVCGNHFCIDCDVFAHMVIHNCPGCQS 443
>gi|340518378|gb|EGR48619.1| predicted protein [Trichoderma reesei QM6a]
Length = 480
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 170/414 (41%), Positives = 227/414 (54%), Gaps = 57/414 (13%)
Query: 25 NGGLEAWERSYADDRSWEA-LQEDESGFLRPIDNSAFYHAQYR----------RRLRDRS 73
NGG +AWE+S R+WE L E+ G L N A Y A+ R +R R
Sbjct: 46 NGGSKAWEQSR---RTWETDLPEESDGML----NLAGYEAERRRRLLRDTTPLQRGIIRH 98
Query: 74 LVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
LV AE D P+R + AFVRE+F+QNP+SQ+ +V ++DGVA ++D+
Sbjct: 99 LVLVLDMSFAMAEKDLLPTRYRLALSYAAAFVREYFEQNPISQLAIVGMRDGVALRVSDM 158
Query: 134 GGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 191
GG+P H++ L G SG+ SLQNAL++ +G L PS+G REVLI+Y AL + DPG
Sbjct: 159 GGNPAEHLERLREYEGQDPSGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSSDPG 218
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHA 247
DI +TI +IR SV+GLSA++ IC LC T Y+VA+DE+HFKEL +
Sbjct: 219 DIHDTINNLVAERIRVSVVGLSAQVAICAELCSRTNVGDDSQYNVAMDETHFKELFLALT 278
Query: 248 PPP-PAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT 304
PP E + A+L+ MGFP R A G+ S C+CH + GY C RC +VC LP+
Sbjct: 279 TPPVNRTKEQSTASLLMMGFPSRTLAPGGTSSYCACHSQ-PCREGYLCTRCGVKVCRLPS 337
Query: 305 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGCQQSL----- 358
+C CGL L+ S HLARSYHHLFP+ + EV P +RST CF CQ
Sbjct: 338 ECPACGLTLILSTHLARSYHHLFPLRNWVEV-PWA-----EAARSTACFSCQSPFPEPPK 391
Query: 359 ----------------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
++ G Y C C HFC++CD++ H +HNCPGC
Sbjct: 392 ANKEKGKDEAAPAKAPAKGVSESGRY-KCQVCDHHFCIDCDVFAHMVIHNCPGC 444
>gi|408397644|gb|EKJ76784.1| hypothetical protein FPSE_02970 [Fusarium pseudograminearum CS3096]
Length = 469
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 165/412 (40%), Positives = 227/412 (55%), Gaps = 56/412 (13%)
Query: 30 AWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSLVAT 77
AWE S R+WE +ED+ G L + A+ R+RL RD R +V
Sbjct: 45 AWEVS---KRTWETGLPEEDQDGVL----SINVLEAEKRKRLLRDTTPLQRGIIRHMVLV 97
Query: 78 TARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
E D P+R ++ AFVREFF+QNP+SQ+G++ ++DGVA ++D+GG+P
Sbjct: 98 LDMSFAMIEKDLLPTRYRLMLSYAVAFVREFFEQNPISQLGIIGMRDGVAVRVSDVGGNP 157
Query: 138 ESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
H+ L G G+ SLQNAL++ +G L PS+G REV I+Y AL + DPGDI E
Sbjct: 158 AEHLDKLKGLESQDPQGNPSLQNALEMCRGALFHAPSHGTREVFIIYGALLSSDPGDIHE 217
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDT----GGSYSVALDESHFKELIMEHAPPPP 251
TI +IR S++GLSA + IC LC T G Y++A+DE HF+EL + PP
Sbjct: 218 TIGNLITDRIRVSIVGLSAHLAICADLCSRTNAGDGSQYNIAMDEVHFRELFLAATTPPV 277
Query: 252 A-IAEFAIANLIKMGFPQRA--GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 308
E + A+L+ MGFP R G+ S C+CH GY C RC ARVC +P++C
Sbjct: 278 TRTVEQSTASLLMMGFPSRTLVPNGTTSYCACHNR-PCREGYLCTRCGARVCRIPSECPS 336
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC-------------Q 355
C L L+ S HLARSYHHLFP+ + EV P + + + CF C
Sbjct: 337 CDLTLILSTHLARSYHHLFPLRNWIEV-PWA----KATTSAGCFSCLAPFPEPPKNKGHD 391
Query: 356 QSLLSSG--------NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
+S SG ++ G Y AC C +HFC++CD++ HE +HNCPGC+SL
Sbjct: 392 KSKEDSGAPKTAKGVSESGRY-ACEVCGQHFCIDCDVFAHEIVHNCPGCQSL 442
>gi|389741483|gb|EIM82671.1| Ssl1-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 382
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 212/356 (59%), Gaps = 36/356 (10%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
+ ++ +LN A+E+ AWE +Y RSW+A+QEDE G L
Sbjct: 30 VDGKKDKLNDRAKEQAY-----------AWEATYT--RSWDAVQEDEGGSLTGAVQELMA 76
Query: 62 HAQYRRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQN 112
+ RR L R LV + D RP+R + + FV E+FDQN
Sbjct: 77 KGRRRRLLAPAAAIRRTIIRHLVLLLDLSASMMDRDLRPTRFDLSLEYAREFVTEWFDQN 136
Query: 113 PLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQI 170
PL Q+G+V ++ G+ + ++ G+P+ +KAL KL +G+ SLQNA+++ + +S +
Sbjct: 137 PLGQVGVVGMRAGLGERVGEMSGNPQDVLKALSERHKLEPTGEPSLQNAIEMARSSMSHL 196
Query: 171 PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 230
P++ RE+L+++ +L+T DPG+I +T+Q C + KIR S++ L+AEM IC+ LC TGG +
Sbjct: 197 PTHSSREILVIFGSLTTVDPGNIYDTLQSCIKDKIRISIVSLAAEMKICRELCDKTGGQF 256
Query: 231 SVALDESHFKELIMEHAPPPP--AIAEFA--------IANLIKMGFPQRAGEGSI-SICS 279
VA++E HFK+L+ E PPP AIA A+L+ MGFP R + S+ S+C
Sbjct: 257 GVAMNEGHFKDLLFELIPPPAQRAIARTTGGPGAANPAADLMMMGFPTRLPDTSLPSLCV 316
Query: 280 CHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 335
CH E++ G+ CPRC ++VC++PTDC +CGL +VSSPHLARSYHHLFP+ P+ V
Sbjct: 317 CHAELR-SAGFLCPRCMSKVCDVPTDCDVCGLMIVSSPHLARSYHHLFPVKPYAAV 371
>gi|353237926|emb|CCA69887.1| probable SSL1-TFIIH subunit (transcription initiation factor),
factor B [Piriformospora indica DSM 11827]
Length = 386
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 205/338 (60%), Gaps = 34/338 (10%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVAT 77
+ +WE SY RSW+ +QEDE G L+ F R+RL+ R L+
Sbjct: 53 IYSWEESYT--RSWDVVQEDEEGSLQQAVGD-FLARSRRKRLQAPTETVRRTIIRHLILV 109
Query: 78 TARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
+ D RP+R + + FV E+FDQNPL QIG+V +++GVA + L G+P
Sbjct: 110 IDLSASMTDRDLRPNRFDLSLEYSREFVTEWFDQNPLGQIGIVGMREGVAERICGLSGNP 169
Query: 138 ESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
+K + + L +G+ SLQNA+++ +G +S +P++ REVL+++ +L+TCDPG+I E
Sbjct: 170 PDVLKTIADRRNLEPAGEPSLQNAIEMARGSMSHLPTHSSREVLVIFGSLTTCDPGNIHE 229
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP---- 251
T++ C E KIR SV+ L+AEM IC+ C +TGG + VA++E H+++++ EH PPP
Sbjct: 230 TLKSCVEDKIRVSVVALAAEMKICRDFCTETGGLFGVAMNEGHYRDMLFEHVPPPAVRKI 289
Query: 252 -AIAEFA------------IANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKA 297
A+A+ + L+ MGFP R E S S+C CH +K GY CPRC +
Sbjct: 290 EAVAKISNGNGAGPAPAAATGELMMMGFPTRLPETSAPSLCVCHGIMK-SEGYICPRCLS 348
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 335
+VC++PTDC +CGL +VS+PHLARSYHHLFP+ P+ V
Sbjct: 349 KVCDIPTDCNVCGLVIVSAPHLARSYHHLFPVKPYQPV 386
>gi|345568422|gb|EGX51316.1| hypothetical protein AOL_s00054g386 [Arthrobotrys oligospora ATCC
24927]
Length = 542
Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 155/430 (36%), Positives = 225/430 (52%), Gaps = 63/430 (14%)
Query: 29 EAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTA 79
E WE RSW+ + E G + + +R LRD R LV
Sbjct: 59 EKWEDI---QRSWDNVVEGADGSIAGTVIGLLEATKRKRLLRDTTPIQRGIIRHLVLILD 115
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
E D RP+R + + FV E+F+QNP+SQ+ ++ + DG+A ++D+GG+P
Sbjct: 116 LSSAMLEKDLRPTRFLLTLRYARDFVTEYFEQNPISQLSIIGMHDGLALRISDMGGNPAD 175
Query: 140 HIKALMGK---LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMET 196
H+ AL K + G SSLQNAL++ + L P++G RE+L+++ ALS+ DPGDI +T
Sbjct: 176 HLTALQEKAFTVEPKGASSLQNALEMGRAELFHTPTHGTREILLIFGALSSSDPGDIHDT 235
Query: 197 IQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPP-P 251
I E +I+ ++GL+A++ +C+ L T +Y V LDE H++EL+M PP
Sbjct: 236 INSLIEDRIQVRIVGLAAQVAVCRELVMKTNDGDDSAYGVILDEGHYRELMMAATTPPVT 295
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGL 311
E ++ +L+ MGFP R E S+CSCH + G GY CPRC A+VC LPT+C CGL
Sbjct: 296 KTEEKSVPSLLMMGFPSRTVEKHESLCSCHSNLTKG-GYICPRCTAKVCFLPTECPCCGL 354
Query: 312 QLVSSPHLARSYHHLFPIAPFDEV-------TPLCLN----DPRNRSRSTCFGCQ----- 355
L+ S HLARSYHHLFP+ + EV + C + P N+S+++ +
Sbjct: 355 TLILSTHLARSYHHLFPLKNWVEVPWSEAHTSTHCWSCQSPFPTNQSQTSSIKIKIRNPS 414
Query: 356 -----------QSLLSSGNKP---------------GLYVACPKCKKHFCLECDIYIHES 389
++ P AC CK HFC++CDI+ HES
Sbjct: 415 TTAATATASRSNGATTTSTAPKNDHQQQQQQPPQPPTQRYACTDCKTHFCIDCDIFTHES 474
Query: 390 LHNCPGCESL 399
LHNCPGC+SL
Sbjct: 475 LHNCPGCQSL 484
>gi|389623489|ref|XP_003709398.1| RNA polymerase TFIIH complex subunit Ssl1 [Magnaporthe oryzae
70-15]
gi|351648927|gb|EHA56786.1| RNA polymerase TFIIH complex subunit Ssl1 [Magnaporthe oryzae
70-15]
gi|440469566|gb|ELQ38674.1| suppressor of stem-loop protein 1 [Magnaporthe oryzae Y34]
gi|440482863|gb|ELQ63315.1| suppressor of stem-loop protein 1 [Magnaporthe oryzae P131]
Length = 516
Score = 267 bits (682), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 168/446 (37%), Positives = 229/446 (51%), Gaps = 92/446 (20%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR-LRD---------RSLVATTA 79
AWE RSW+ + E + G L F A+ RRR LRD R LV
Sbjct: 52 AWEDLQ---RSWDVVHELDDGNLSL---EGFLEAEKRRRVLRDTTPIQRGIIRHLVLVID 105
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
AE D P+R + FVRE+FDQNP+SQ+ +V ++D +A ++DL G+P
Sbjct: 106 MSFAMAEKDLMPTRHRLTISYAIEFVREYFDQNPISQLAIVGMRDSIAVRISDLSGNPAE 165
Query: 140 HIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
HI+ L + L SG SLQNAL++ +G L PS+G REV+I++ AL + DPGDI ETI
Sbjct: 166 HIEKLRALPDLDPSGSPSLQNALEMCRGALFNTPSHGTREVVIIFGALLSLDPGDIHETI 225
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDT----------------GGSYSVALDESHFKE 241
+ +IR SVIGL+A+++IC+ +C+ T G +Y+VAL E HF+E
Sbjct: 226 DGLMQDRIRVSVIGLAAQVYICEEICRRTNSGKAAADLGIVTDTDGSAYNVALHEVHFRE 285
Query: 242 LIMEHAPPPPA------IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRC 295
L+M PP A A+L+ MGFP R + ++CSCH V G+ C RC
Sbjct: 286 LLMSATRPPVTRQSQLQQATGETASLLMMGFPSRKTDKDPALCSCHNR-PVRNGFLCTRC 344
Query: 296 KARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRS-RS-TCFG 353
+RVC LP++C CGL L+ S HLARSYHHLFP+ + EV P N + RS +CF
Sbjct: 345 GSRVCRLPSECPACGLTLILSTHLARSYHHLFPLKIWSEV-------PWNDAVRSVSCFA 397
Query: 354 CQQSLLSSGNK-----------------------------------------PGLYVACP 372
C + NK G Y+ C
Sbjct: 398 CHAPFPDAKNKDADKGKDAEKDPGDKHLKVPSKDTNGKKKKPAAPVPKGVSESGRYM-CQ 456
Query: 373 KCKKHFCLECDIYIHESLHNCPGCES 398
C+ HFC++CD++ HE LHNCPGC+S
Sbjct: 457 VCRHHFCIDCDVFSHEVLHNCPGCQS 482
>gi|341038582|gb|EGS23574.1| putative transcription factor [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 534
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 168/458 (36%), Positives = 229/458 (50%), Gaps = 99/458 (21%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSLVATTA 79
AWE RSWE + E E G I A A+ RRRL RD R LV
Sbjct: 56 AWEDI---QRSWENVVETEDG---SITIEALIEAEKRRRLMRDTTPLQRGIIRHLVLVLD 109
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
AE D P+R + FVRE+F+QNP+SQ+G++ ++DG+A ++D+ G+P
Sbjct: 110 MSFAMAEKDLLPNRYLLTLNYAVDFVREYFEQNPISQMGIIAMRDGIAVRVSDMSGNPAD 169
Query: 140 HIKAL---MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMET 196
HI+ L G+ SLQNAL++ +G L PS+G REVLI+Y AL + DPGDI ET
Sbjct: 170 HIERLRFWAEHQEPQGNPSLQNALEMCRGALYHTPSHGTREVLIVYGALLSSDPGDIHET 229
Query: 197 IQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPPA 252
I + +IR +V+GL+A++ +C LC T +Y+VAL E HF+EL + PPPA
Sbjct: 230 ISNLVKDRIRVTVVGLAAQVAVCAELCTRTNHGDDSTYAVALHEQHFRELFLAATIPPPA 289
Query: 253 IAEFAI---------------ANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRC 295
A A A+L+ MGFP R A +S+C+CH GY C RC
Sbjct: 290 TASSATDKNGANGNANAASTDASLLMMGFPSRTLASASHVSLCACHSRPSRE-GYLCTRC 348
Query: 296 KARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC- 354
+A+VC LP +C CGL L+ S HLARSYHHLFP+ + EV+ + R + CF C
Sbjct: 349 RAKVCRLPAECPACGLTLILSTHLARSYHHLFPLKGWVEVS---WAEARKSKQVGCFACL 405
Query: 355 ------------------------------QQSLLSSGNK------PGLYVA-------- 370
Q+ SS N G+ +A
Sbjct: 406 APFPLPPAPGSEKTGKEPTQKTQGQAQQPPQERQGSSSNSNNAKKTTGISLATALPEARA 465
Query: 371 ----------CPKCKKHFCLECDIYIHESLHNCPGCES 398
CP C KHFC++CD++ HE +HNCPGC++
Sbjct: 466 VGVSESGRYKCPTCGKHFCIDCDVFAHEVIHNCPGCQA 503
>gi|296817267|ref|XP_002848970.1| suppressor of stem-loop protein 1 [Arthroderma otae CBS 113480]
gi|238839423|gb|EEQ29085.1| suppressor of stem-loop protein 1 [Arthroderma otae CBS 113480]
Length = 484
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/405 (37%), Positives = 223/405 (55%), Gaps = 45/405 (11%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
GG E WE + R+WE L E G + + + +R L+D R ++
Sbjct: 59 GGAE-WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLKDTTPLQRGIIRHMIL 113
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
AE D RP+R + + + FV EFF+QNP+SQ+G++ +KDGVA ++++ G+
Sbjct: 114 VLDLSFAMAEKDLRPTRYLLTLRYAQKFVLEFFEQNPISQLGIMGMKDGVAVQVSEMSGN 173
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P HI AL + G SLQNAL++ +G L P++G REV+I+ AL + DPGDI
Sbjct: 174 PTEHILALHALRSEDPKGLPSLQNALEMARGSLYHTPTHGTREVIIILGALLSSDPGDIR 233
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPP 250
+TI K+R +IGL+A++ IC+ LC T SY VA+DE H +L+++ PP
Sbjct: 234 QTITSLVADKVRVGIIGLAADVAICRELCAKTNDGNDSSYGVAIDEKHLWDLLLDVTTPP 293
Query: 251 PAIAE-FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
++ ++ ++L+ MGFP R E S+C+CH + G GY C RC ++VC LP +C C
Sbjct: 294 VTYSQRYSSSSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPTC 352
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS--TCFGCQQSL--------- 358
L L+ S HLARSYHHLFP+ + EV P R+ +CF C
Sbjct: 353 NLTLILSTHLARSYHHLFPLINWVEV-------PWKRASKSVSCFACGNVFPPVPPREKW 405
Query: 359 -LSSGNKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
G+ G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 406 DRQEGSVKGMSVSSRYECTVCHHHFCIDCDVFAHEIVHNCPGCQS 450
>gi|453087906|gb|EMF15947.1| TFIIH basal transcription factor complex, subunit SSL1
[Mycosphaerella populorum SO2202]
Length = 460
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 162/442 (36%), Positives = 238/442 (53%), Gaps = 59/442 (13%)
Query: 15 EEEEDEDDNLNGGLEAWERSYADD------RSWEA-------LQEDESGFLRPIDNSAFY 61
E +ED+D +NG R+ A WE L++ G L +
Sbjct: 7 EYDEDDDLQVNGDGTGKGRTLASRPKARALARWEEGATGTGDLRQGADGNLLEVLGGIEE 66
Query: 62 HAQYRRRLRD-----RSLVATTARIQKAA----EMDFRPSRMAVVAKQVEAFVREFFDQN 112
A+ +R ++D R ++ T I + E D RP+R+ + V AF+RE+F+QN
Sbjct: 67 AAKRKRLVKDTTPLQRGIIRHTILILDLSLAMMEKDLRPTRLLLTLTYVIAFIREYFEQN 126
Query: 113 PLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQI 170
P+SQ+G++ +++G+A ++D+ G+P HI A+ + G+ SLQNAL++ + L
Sbjct: 127 PISQLGILGMREGLAIRVSDMSGNPNDHINAIKALRSTDPKGNPSLQNALEMARAALYHT 186
Query: 171 PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS- 229
PS+G REV I+ AL T DPGDI +TI+ C + KIR ++IGL+A+MFIC +C+ T
Sbjct: 187 PSHGTREVAIILGALHTSDPGDIHDTIKACIKDKIRVNIIGLAAQMFICAEICRKTNQGD 246
Query: 230 ---YSVALDESHFKELIMEHAPPPPAIAEFAIAN------LIKMGFPQRAGEGSISICSC 280
Y+VA+DE H++EL+M PP A A L+ MGFP R E ++C+C
Sbjct: 247 TNCYNVAVDEVHYRELLMSITTPPVVRASDVEAQKRNQAALLMMGFPSRIVEEKATLCAC 306
Query: 281 HKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCL 340
H + G GY C RCKA+VC LP C C L L+ S HLARSYHHLFP+ +DEV+
Sbjct: 307 HGNLTRG-GYLCSRCKAKVCNLPATCPTCELTLILSTHLARSYHHLFPLQNWDEVS---W 362
Query: 341 NDPRNRSRSTCFGCQQSLLS-SGNKPGL--------------------YVACPKCKKHFC 379
+ + CFGCQ + SG G+ C C++HFC
Sbjct: 363 KRAQQKRSVQCFGCQSPFPALSGGIDGVDGSANGHSRPKRAEGASESSRYECSTCQQHFC 422
Query: 380 LECDIYIHESLHNCPGCESLRH 401
++CD++ HE +HNCPGC+S H
Sbjct: 423 IDCDVFCHEVVHNCPGCQSNAH 444
>gi|219521045|gb|AAI71919.1| GTF2H2C protein [Homo sapiens]
Length = 338
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 148/338 (43%), Positives = 207/338 (61%), Gaps = 24/338 (7%)
Query: 72 RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 131
R L + + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT
Sbjct: 2 RHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLT 61
Query: 132 DLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 189
+L G+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCD
Sbjct: 62 ELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCD 121
Query: 190 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPP 249
P +I + I+ K +KIR SV GLSAE+ +C L ++TGG+Y V LDESH+KEL+ H P
Sbjct: 122 PSNIYDLIKTLKAAKIRVSVTGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSP 181
Query: 250 PPAIAEFAIANLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKAR 298
PPA + +LI+MGFPQ + S S+ + G+ GY CP+C+A+
Sbjct: 182 PPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAK 240
Query: 299 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 358
CELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L
Sbjct: 241 YCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL 295
Query: 359 LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 296 ----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 328
>gi|46123249|ref|XP_386178.1| hypothetical protein FG06002.1 [Gibberella zeae PH-1]
Length = 469
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 163/412 (39%), Positives = 224/412 (54%), Gaps = 56/412 (13%)
Query: 30 AWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSLVAT 77
AWE S R+WE ED+ G L + A+ R+RL RD R +V
Sbjct: 45 AWEVS---KRTWETGLPDEDQDGVL----SINVLEAEKRKRLLRDTTPLQRGIIRHMVLV 97
Query: 78 TARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
E D P+R ++ AFVREFF+QNP+SQ+G++ ++DGVA ++D+GG+P
Sbjct: 98 LDMSFAMTEKDLLPTRYRLMLSYAVAFVREFFEQNPISQLGIIGMRDGVAVRVSDVGGNP 157
Query: 138 ESHIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
H+ L G G+ SLQNAL++ +G L PS+G REV I+Y AL + DPGDI E
Sbjct: 158 AEHLDKLKGLESQDPQGNPSLQNALEMCRGALFHAPSHGTREVFIIYGALLSSDPGDIHE 217
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPP 251
TI +IR S++GLSA + IC LC T Y++A+DE HF+EL + PP
Sbjct: 218 TIGNLITDRIRVSIVGLSAHLAICADLCSRTNAGDESQYNIAMDEVHFRELFLAATTPPV 277
Query: 252 A-IAEFAIANLIKMGFPQRA--GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 308
+ A+L+ MGFP R G+ S C+CH GY C RC ARVC +P++C
Sbjct: 278 TRTVAQSTASLLMMGFPSRTLVPNGTTSYCACHNR-PCREGYLCTRCGARVCRIPSECPS 336
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC-------------Q 355
C L L+ S HLARSYHHLFP+ + EV P + + + CF C
Sbjct: 337 CDLTLILSTHLARSYHHLFPLRNWIEV-PWA----KATTSAGCFSCLAPFPEPPKNKGHD 391
Query: 356 QSLLSSG--------NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
+S SG ++ G Y AC C +HFC++CD++ HE +HNCPGC+SL
Sbjct: 392 KSKEDSGAPKTAKGVSESGRY-ACEVCGQHFCIDCDVFAHEVVHNCPGCQSL 442
>gi|256075586|ref|XP_002574099.1| btf [Schistosoma mansoni]
gi|360045424|emb|CCD82972.1| putative btf [Schistosoma mansoni]
Length = 423
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 159/422 (37%), Positives = 226/422 (53%), Gaps = 66/422 (15%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFY--HAQYRRRLRDRSLVATTARI------- 81
WE Y +++W A++EDESG L + H Q R++ R R V +T +
Sbjct: 14 WESGY--EKTWSAIREDESGRLVTTLEQLIHDAHTQIRKK-RRRIGVGSTGFVRLGMMRH 70
Query: 82 --------QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
Q E D +P+R+ K FVRE+FDQNP+SQ+G++ D A LT+L
Sbjct: 71 LFLIIDLSQAMNEQDLKPNRLICTVKAACTFVREYFDQNPISQLGIIVTSDRRAERLTEL 130
Query: 134 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 191
G+P H+ AL + C G+ SLQNAL L + L + H E+++L ++L+TCDP
Sbjct: 131 SGNPRPHLAALQSLYTRTCIGEPSLQNALLLAESRLKY--TIHHNEIVVLMASLTTCDPS 188
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 251
DI +TI+ ++IRCSVI L+ E+F+ + L Q T G++ V +DE H K ++ + PPP
Sbjct: 189 DIHQTIKSLSSNRIRCSVISLAVEVFVYRALAQLTQGTFHVIMDELHLKNVLKDLVPPPV 248
Query: 252 AIAEFAIANLIKMGFPQR----AGEGSISICSCHKEVKVGVG---------YTCPRCKAR 298
A E ANLI+MGFP ++ C CH K Y CPRC +
Sbjct: 249 AAIETE-ANLIRMGFPHSETFDLDRFAVKRCMCHLSNKPTNDKTDTTTNPHYACPRCHSA 307
Query: 299 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV--------TPLCLNDPRNRSRST 350
CELP +C +CGL LV++PHLAR+YHHLFP+ F+ V T L D + +S+ T
Sbjct: 308 YCELPVECNVCGLTLVAAPHLARAYHHLFPLDLFEPVNGSGSFSETSL---DNQEKSKET 364
Query: 351 -------------CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 397
CFGC +++ PG CPKCK FC CD +H+S+H+CPGC
Sbjct: 365 IDSADSVDHQQRLCFGC--NVIIPSKIPG--YQCPKCKFIFCHSCDAVLHDSIHSCPGCL 420
Query: 398 SL 399
+L
Sbjct: 421 TL 422
>gi|327301499|ref|XP_003235442.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton rubrum CBS
118892]
gi|326462794|gb|EGD88247.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton rubrum CBS
118892]
Length = 489
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 149/400 (37%), Positives = 222/400 (55%), Gaps = 44/400 (11%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE + R+WE L E G + + + +R LRD R ++
Sbjct: 64 WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLRDTTPLQRGIIRHMILVLDLS 119
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
AE D RP+R + + + FV+EFF+QNP+SQ+G++ +KDG+A ++++ G+P H+
Sbjct: 120 FAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGIMGMKDGIAVQISEMSGNPTEHM 179
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
AL + G SLQNAL++ +G L PS+G REV+I+ AL + DPGDI +TI
Sbjct: 180 LALHALRAEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLSSDPGDIHQTITS 239
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPPAIAE 255
K+R +IGL+A++ IC+ +C T SY VA+DE H +L+++ PP ++
Sbjct: 240 LVADKVRVGIIGLAADVAICREICAKTNDGNDSSYGVAIDEKHLWDLLLDVTTPPVTYSQ 299
Query: 256 -FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 314
++ +L+ MGFP R E S+C+CH + G GY C RC ++VC LP +C C L L+
Sbjct: 300 RYSSNSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPTCNLTLI 358
Query: 315 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS-TCFGCQQSL----------LSSG 362
S HLARSYHHLFP+ + EV P R SRS +CF C +
Sbjct: 359 LSTHLARSYHHLFPLINWVEV-------PWKRASRSVSCFACGNPFPAVPPRDKWDMRDR 411
Query: 363 NKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 412 SIKGMSVSSRYECTVCHHHFCIDCDVFAHEVVHNCPGCQS 451
>gi|346326021|gb|EGX95617.1| TFIIH basal transcription factor complex, subunit SSL1 [Cordyceps
militaris CM01]
Length = 508
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 165/423 (39%), Positives = 223/423 (52%), Gaps = 66/423 (15%)
Query: 29 EAWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVA 76
+AWE+S R+WE +E + G L + A+ RRRLR R LV
Sbjct: 71 QAWEQS---KRTWETGLPEEGDDGTL----DLTTLEAEKRRRLRRDTTPLQRGIIRHLVL 123
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
A+ D P+R + + AFVREFF+QNP+SQ+G+V ++DGVA ++DLGG+
Sbjct: 124 VLDMSFAMADKDMLPTRHRLTLRYAAAFVREFFEQNPISQLGIVGMRDGVAVRVSDLGGN 183
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQG---------LLSQIPSYGHREVLILYSAL 185
P H++ L + G+ SLQNAL++ +G S PS+G REVLI+Y AL
Sbjct: 184 PAEHLERLKALESQDPQGNPSLQNALEMCRGCNANEFNVHTNSHAPSHGTREVLIIYGAL 243
Query: 186 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKE 241
+ DPGDI +T+ +IR S++GLSA + IC LC T Y VA DE HF+E
Sbjct: 244 LSSDPGDIHDTLASLINDRIRVSIVGLSAHLSICAELCARTNAGDTSQYGVATDEVHFRE 303
Query: 242 LIMEHAPPPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKAR 298
L + PP E + A+L+ MGFP R A G+ S C+CH G+ C RC R
Sbjct: 304 LFLAATTPPVTRTKEQSTASLLMMGFPSRVLAPGGATSFCACHNR-PCREGFLCTRCGTR 362
Query: 299 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ--- 355
VC LP +C C L L+ S HLARSYHHLFP+ + EV+ D RS CF CQ
Sbjct: 363 VCRLPAECPACALTLILSTHLARSYHHLFPLRNWVEVS---WADAVGRS-PACFACQCPF 418
Query: 356 --------------------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPG 395
+ + ++ G Y AC C HFC++CD+Y HE +HNCPG
Sbjct: 419 PAAAATGGDASAREEGQGKKRPTVKGVSESGRY-ACEVCGNHFCIDCDVYAHEVIHNCPG 477
Query: 396 CES 398
C+S
Sbjct: 478 CQS 480
>gi|388856633|emb|CCF49750.1| probable SSL1-TFIIH subunit (transcription initiation factor),
factor B [Ustilago hordei]
Length = 506
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/420 (35%), Positives = 219/420 (52%), Gaps = 57/420 (13%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTAR 80
+WE +Y RSW+A+ ED+SG L ++ RR L+D R LV
Sbjct: 89 SWEETY--KRSWDAVAEDDSGSLESAVRQMIEGSKRRRTLKDVAPVQRGIIRHLVLLIDL 146
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
E D RP+R V + + FV E+FDQNP+ Q+ ++ ++G+A L +GG+ H
Sbjct: 147 SASMLEKDMRPNRFDVTLQYAKEFVMEYFDQNPIGQLSVIGTREGIAERLAMMGGNTVDH 206
Query: 141 IKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+L K L G+ SLQNAL++ + L +P+ RE+L ++ +L+TCDPG+I +TI
Sbjct: 207 TASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGNIHDTIN 266
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA------ 252
+ IR S++ L+AE+ + K +C TGG++SVAL+E HF + + EH PPP
Sbjct: 267 TLVKDNIRVSIVHLAAEVKVFKDVCTRTGGTFSVALNEGHFHDSLFEHVPPPAVEGPRRP 326
Query: 253 ---------------IAEFAIAN---LIKMGFPQR-AGEGSISICSCHKEVKVGVGYTCP 293
E +AN L++M FP R + ++C+CH + G GY CP
Sbjct: 327 KRRIIAASGNGAATTEEEEEVANGVDLLQMAFPLRLPAHAAPTLCACHSRSR-GSGYLCP 385
Query: 294 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 353
RC +VC++PTDC +CG+ +V S HLARSYHHLFP+ P +V P + C
Sbjct: 386 RCGVKVCDVPTDCPVCGITIVMSTHLARSYHHLFPV-PNWKVVPWSALLSAAKVEPACLS 444
Query: 354 CQ-----------------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C ++L +G C +C FCLECD ++HE LH CPGC
Sbjct: 445 CNLLFPTQEQGAARSAAANKALEEAGLSESSRYRCGRCSHDFCLECDAFVHEQLHVCPGC 504
>gi|326468925|gb|EGD92934.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton tonsurans
CBS 112818]
gi|326480095|gb|EGE04105.1| RNA polymerase TFIIH complex subunit Ssl1 [Trichophyton equinum CBS
127.97]
Length = 489
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/400 (37%), Positives = 222/400 (55%), Gaps = 44/400 (11%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE + R+WE L E G + + + +R L+D R ++
Sbjct: 64 WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLKDTTPLQRGIIRHMILVLDLS 119
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
AE D RP+R + + + FV+EFF+QNP+SQ+G++ +KDG+A ++++ G+P H+
Sbjct: 120 FAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGIMGMKDGIAVQISEMSGNPTEHM 179
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
AL + G SLQNAL++ +G L PS+G REV+I+ AL + DPGDI +TI
Sbjct: 180 LALHALRAEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLSSDPGDIHQTITS 239
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPPAIAE 255
K+R +IGL+A++ IC+ +C T SY VA+DE H +L+++ PP ++
Sbjct: 240 LVADKVRVGIIGLAADVAICREICAKTNDGNDSSYGVAMDEKHLWDLLLDVTTPPVTYSQ 299
Query: 256 -FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 314
++ +L+ MGFP R E S+C+CH + G GY C RC ++VC LP +C C L L+
Sbjct: 300 RYSSNSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPTCNLTLI 358
Query: 315 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS-TCFGCQQSL----------LSSG 362
S HLARSYHHLFP+ + EV P R SRS +CF C +
Sbjct: 359 LSTHLARSYHHLFPLINWVEV-------PWKRASRSVSCFACGNPFPAVPPRDTWDMRDR 411
Query: 363 NKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 412 SIKGMSVSRRYECTVCHHHFCIDCDVFAHEVVHNCPGCQS 451
>gi|302680178|ref|XP_003029771.1| hypothetical protein SCHCODRAFT_82959 [Schizophyllum commune H4-8]
gi|300103461|gb|EFI94868.1| hypothetical protein SCHCODRAFT_82959 [Schizophyllum commune H4-8]
Length = 400
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 202/333 (60%), Gaps = 30/333 (9%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRR---------RLRDRSLVATTAR 80
WE SY RSW+ +QEDESG L+ A+ +R R R LV
Sbjct: 51 TWEASYT--RSWDTVQEDESGSLQGAVEDWVVRARRKRLQAPSTAIRRTIIRHLVLLLDL 108
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D RP+R ++ + FV E+FDQNPL QIG+V ++ G+ + ++ G+P+
Sbjct: 109 SSAMLDRDMRPTRFDLMLQYAREFVVEWFDQNPLGQIGVVGMRSGIGERICEMTGNPQDV 168
Query: 141 IKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+K++ +L G+ SLQNA+++ + +S +P++ RE+L+++ +L+TCDPGDI +T+
Sbjct: 169 LKSISERHRLEPQGEPSLQNAIEMARSSMSHLPTHSSREILLIFGSLTTCDPGDIHDTLD 228
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP-------- 250
C KIR SV+ L+AEM IC+ C TGG + VAL+E HF++++ E PPP
Sbjct: 229 TCVRQKIRVSVVALAAEMKICREFCDKTGGQFGVALNEGHFRDILFELVPPPAQRALGGA 288
Query: 251 ----PAIAEFA---IANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCEL 302
P A A A+L+ MGFP R + + S+C+CH E++ G+ CPRC+++VC++
Sbjct: 289 GMGAPGKATAASGPSADLMMMGFPTRLPDTTPPSLCACHGELR-SAGFLCPRCQSKVCDV 347
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 335
PTDC +CGL +VSSPHLARSYHHLFP+ P+ +
Sbjct: 348 PTDCDVCGLMIVSSPHLARSYHHLFPVRPYAAI 380
>gi|302506370|ref|XP_003015142.1| hypothetical protein ARB_06903 [Arthroderma benhamiae CBS 112371]
gi|291178713|gb|EFE34502.1| hypothetical protein ARB_06903 [Arthroderma benhamiae CBS 112371]
Length = 490
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/400 (37%), Positives = 221/400 (55%), Gaps = 44/400 (11%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE + R+WE L E G + + + +R L+D R ++
Sbjct: 64 WEVA----RTWETLVEGADGTITATVDGLLEADKRKRLLKDTTPLQRGIIRHMILVLDLS 119
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
AE D RP+R + + + FV+EFF+QNP+SQ+G+ +KDG+A ++++ G+P H+
Sbjct: 120 FAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGITGMKDGIAVQISEMSGNPTEHM 179
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
AL + G SLQNAL++ +G L PS+G REV+I+ AL + DPGDI +TI
Sbjct: 180 LALHALRAEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLSSDPGDIHQTITS 239
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPPAIAE 255
K+R +IGL+A++ IC+ +C T SY VA+DE H +L+++ PP ++
Sbjct: 240 LVADKVRVGIIGLAADVAICREICAKTNDGNDSSYGVAIDEKHLWDLLLDVTTPPVTYSQ 299
Query: 256 -FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 314
++ +L+ MGFP R E S+C+CH + G GY C RC ++VC LP +C C L L+
Sbjct: 300 RYSSNSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPTCNLTLI 358
Query: 315 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS-TCFGCQQSL----------LSSG 362
S HLARSYHHLFP+ + EV P R SRS +CF C +
Sbjct: 359 LSTHLARSYHHLFPLINWVEV-------PWKRASRSVSCFACGNPFPAVPPRDKWDMRDR 411
Query: 363 NKPGLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 412 SIKGMSVSSRYECTVCHHHFCIDCDVFAHEVVHNCPGCQS 451
>gi|407917809|gb|EKG11111.1| von Willebrand factor type A [Macrophomina phaseolina MS6]
Length = 481
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 155/421 (36%), Positives = 223/421 (52%), Gaps = 57/421 (13%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVATTAR 80
WE+ D AL+E G L P D A+ R+RLR R +V +
Sbjct: 42 WEQGVQADA--HALKEGADGKLLP-DEEDNPEAKKRKRLRQDTKPFQRGIIRHVVLVLDQ 98
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ + DF+P+R A V K + +VREFF+QNP+SQ+ ++T+ DG+ N +++L G+P H
Sbjct: 99 SEAMLDKDFKPTRYAAVLKYAQEYVREFFEQNPISQLSVMTMYDGLCNRVSELSGNPNDH 158
Query: 141 IKALMGKLGCS--------GDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
I L G SLQNAL+ + L PS+G REV+I+ AL + DPGD
Sbjct: 159 ISPLQRMRDTRNPNYQDPRGSPSLQNALEQARAALYHTPSHGTREVIIILGALLSLDPGD 218
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAP 248
I +TI C ++ +R ++IG+ + IC+ +C T G +Y VA+D+ HF++L++
Sbjct: 219 IFKTIANCVKNNVRVNIIGMGGRLKICQEICSRTNGGDESAYVVAVDQLHFRDLLLATTT 278
Query: 249 PP-----PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 303
PP A A A+L+KMGFP R E + +IC+CH + G GY C +C+A+VC LP
Sbjct: 279 PPVIRQTTAQAAANPASLLKMGFPSRVEESAPTICACHGTLTRG-GYLCSQCQAKVCSLP 337
Query: 304 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT--------------------PLCLNDP 343
T C C L L+ S HLARSYHHLFP+ + EVT PL
Sbjct: 338 TTCPSCNLTLILSTHLARSYHHLFPLKNWREVTWERARQVGSTECKSCLTPFPPLPARSA 397
Query: 344 RNRSRSTCFGCQQSLLSSGNKPGLYVA------CPKCKKHFCLECDIYIHESLHNCPGCE 397
+ +T G Q + N G+ + C C+ HFC++CD+Y HE +HNCPGC
Sbjct: 398 AAKKAATANGEQHGAPGTKNTEGVGASESSRYECEDCRNHFCVDCDVYCHEIVHNCPGCL 457
Query: 398 S 398
S
Sbjct: 458 S 458
>gi|343426526|emb|CBQ70055.1| probable SSL1-TFIIH subunit (transcription initiation factor),
factor B [Sporisorium reilianum SRZ2]
Length = 511
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 148/420 (35%), Positives = 219/420 (52%), Gaps = 59/420 (14%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTAR 80
+WE +Y RSW+A+ ED+SG L S ++ RR L+D R LV
Sbjct: 97 SWEATY--KRSWDAVAEDDSGSLESAVRSMIEGSKRRRVLKDVAPVQRGIIRHLVLLIDL 154
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
E D RP+R V + FV E+FDQNP+ Q+ ++ + G+A L +GG+ H
Sbjct: 155 SASMLEKDMRPNRFDVTLQYAREFVGEYFDQNPIGQLSIIGTRQGIAERLAMMGGNTVDH 214
Query: 141 IKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+L K L G+ SLQNAL++ + L +P+ RE+L ++ +L+TCDPG+I +TI
Sbjct: 215 TASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGNIHDTIG 274
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP------- 251
+ IR S++ L+AE+ + K +C TGG++SVAL+E HF + + E PPP
Sbjct: 275 TLVKDNIRVSIVHLAAEVKVFKDVCTRTGGTFSVALNEGHFHDSLFELVPPPAVEGPRRT 334
Query: 252 -----AIAEFAIAN------------LIKMGFPQR-AGEGSISICSCHKEVKVGVGYTCP 293
A A A+ L++M FP R + ++C+CH + G GY CP
Sbjct: 335 KRRSGAATNGAAADGEDDEEVHNGVDLLQMAFPLRLPAHAAPTLCACHSRSR-GSGYVCP 393
Query: 294 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 353
RC +VC++PTDC +CG+ +V S HLARSYHHLFP+ + V ++ S + C
Sbjct: 394 RCGVKVCDVPTDCPVCGITIVMSTHLARSYHHLFPVPNWKAVPWTAVS---ATSDAACLS 450
Query: 354 C-----------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C ++L +G C +C + FCLECD ++HE LH CPGC
Sbjct: 451 CNLPFPTLQDGEASSAAANKALEDAGLSASSRYRCTRCSRDFCLECDAFVHEQLHVCPGC 510
>gi|406863243|gb|EKD16291.1| RNA polymerase TFIIH complex subunit Ssl1 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 524
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 152/405 (37%), Positives = 223/405 (55%), Gaps = 45/405 (11%)
Query: 27 GLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVAT 77
G WE RSW+ + E G L + +R LRD R +
Sbjct: 110 GRAKWEDI---QRSWDTVVEGADGSLNSTVEGLRDAGKRKRLLRDTTPVQRGIIRHFILI 166
Query: 78 TARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
E D RP+R + + FV EFF+QNP+SQ+G++ ++DG+A ++++GG+P
Sbjct: 167 MDLSFAMVEKDLRPTRYLLTLRFASEFVTEFFEQNPISQLGVLGMRDGIAIRVSEMGGNP 226
Query: 138 ESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
HI+ + + L G+ SLQNAL++ + +L P++G REVLI+ AL T DPGDI E
Sbjct: 227 TEHIENIKKLRDLQGQGNPSLQNALEMARAILHYAPAHGTREVLIISGALLTSDPGDIHE 286
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPP 251
T++ +IR SV+GL+A++ I +C T G+Y VAL+E HF+EL+M PP
Sbjct: 287 TVRSLVTDRIRVSVVGLAAQVKILSVICSKTNAGNEGNYHVALNEQHFRELVMALTTPPV 346
Query: 252 AIAEF-AIANLIKMGFPQR-AGEG-SISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 308
+ + L+ MGFP R +G G ++S C+CH ++ G GY C RC ++VC LP DC +
Sbjct: 347 TRTKTQSQPTLLMMGFPSRISGVGKAMSYCACHSKLVRG-GYLCSRCDSKVCSLPADCPV 405
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQQSL-------- 358
CGL LV S HLARSYHHLFP+ + EV P +++ + CF C +
Sbjct: 406 CGLTLVLSTHLARSYHHLFPLKNWVEV-------PWSQAGKSKACFACLTAFPEVPSHLE 458
Query: 359 -----LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
++ G Y C C HFC++CD++ HE +HNCPGC+S
Sbjct: 459 KNGAEREGTSESGRYT-CEDCGYHFCIDCDVHAHEVVHNCPGCQS 502
>gi|346979033|gb|EGY22485.1| suppressor of stem-loop protein [Verticillium dahliae VdLs.17]
Length = 461
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 155/405 (38%), Positives = 224/405 (55%), Gaps = 54/405 (13%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSLVATTARIQKAAEMD 88
RSWE ++E G L D A+ RRRL RD R LV AE D
Sbjct: 45 RSWETVEEGADGSL---DVEGRAEAEKRRRLLRDTTPLQRGIIRHLVLVLDMSFAMAEKD 101
Query: 89 FRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MG 146
P+R+ + + FV+E+F+QNP+SQ+G+V ++DGVA ++++GG+P H++A+
Sbjct: 102 LLPTRLRLTWRLAREFVKEYFEQNPISQMGIVGMRDGVAVRVSEMGGNPVEHVEAINKWA 161
Query: 147 KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIR 206
++ G SLQNAL++ +G L PS+G REVL++Y AL + DPGDI +TI +IR
Sbjct: 162 EIDPQGSPSLQNALEMCRGALFHAPSHGTREVLVVYGALLSSDPGDIHDTIANLLADRIR 221
Query: 207 CSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAEF-AIANL 261
S++GL+A++ IC+ LC+ T Y++ALDE H++EL++ PP + + A+L
Sbjct: 222 VSIVGLAAQVAICEELCRKTNAGDATQYNIALDEMHYRELLLRTTTPPVTRTQAQSTASL 281
Query: 262 IKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHL 319
+ MGFP R A + + C+CH V GY C RC RVC LP +C CGL L+ S HL
Sbjct: 282 LMMGFPSRTLAPADTTAYCACHN-TPVREGYLCTRCGTRVCRLPAECPACGLTLILSTHL 340
Query: 320 ARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC--------------QQSLLSSGNKP 365
ARSYHHLFP+ + EV P R + C+ C + + G+K
Sbjct: 341 ARSYHHLFPLRNWVEV-PWA----RAAASRACYACLAPFPDPPPQRRGHRTNGTDGGDKE 395
Query: 366 GLYV------------ACPKCKKHFCLECDIYIHESLHNCPGCES 398
V AC C HFC++CD++ HE +HNCPGC+S
Sbjct: 396 AAPVPKQKGVSESSRYACQVCGNHFCIDCDVFAHEVIHNCPGCQS 440
>gi|392593840|gb|EIW83165.1| Ssl1-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 375
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 134/326 (41%), Positives = 199/326 (61%), Gaps = 29/326 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLR---------PIDNSAFYHAQYRRRLRDRSLVATTAR 80
WE SY RSW+ +QEDE+G L+ A RR R L+
Sbjct: 53 TWEASYT--RSWDTVQEDEAGSLQGAVEDWVARSRRRRLLAPANAIRRAIIRHLILLIDL 110
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D RP+R + + F+ E+FDQNPL QIG+V ++ GV + ++ G+P+
Sbjct: 111 SSSMLDRDMRPTRFDLTLEYTREFITEWFDQNPLGQIGVVGMRAGVGERIGEMSGNPQEV 170
Query: 141 IKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+ ++ K+ +G+ SLQNA+++ + +S +P++ RE+LI+ +L+TCDPG+I +T+
Sbjct: 171 LGSIADRHKIEPTGEPSLQNAIEMARNGMSHLPTHSSREILIVIGSLTTCDPGNIHDTLD 230
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
C ++KIR SV+ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP A+ A+
Sbjct: 231 SCVKNKIRVSVVALAAEMKICRELCDKTGGQFGVALNEGHFKDLLFELVPPP---AQRAV 287
Query: 259 -----------ANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCELPTDC 306
A+L+ MGFP R + + S+C CH ++K G+ CPRC A+VC++PTDC
Sbjct: 288 NRAGGGAGSTSADLMMMGFPTRLPDTTPPSLCVCHSDLK-SEGFLCPRCMAKVCDVPTDC 346
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPF 332
ICGL +VSSPHLARSYHHLFP+ P+
Sbjct: 347 DICGLMIVSSPHLARSYHHLFPVRPY 372
>gi|390602659|gb|EIN12052.1| Ssl1-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 377
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 199/325 (61%), Gaps = 22/325 (6%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYR---------RRLRDRSLVATTAR 80
AWE SY RSW+ +QEDE+G L + R RR R L+
Sbjct: 56 AWEASYT--RSWDMVQEDETGSLTAAVQDLVARGRRRRLLGPGGAIRRTIIRHLILVLDL 113
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D RP+R + + F+ E+FDQNPL QIG+V ++ GV + + G+P+
Sbjct: 114 SSSMTDRDMRPTRFGLTLEYAREFITEWFDQNPLGQIGIVGMRAGVGERIGQMSGNPQDV 173
Query: 141 IKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+KA+ K+ +G+ SLQNA+++ + +S +P++ +E+LI++ +L+T DPG+I +T+
Sbjct: 174 LKAISERHKMEPNGEPSLQNAIEMARSSMSHLPTHSSKEILIVFGSLTTVDPGNIHDTLD 233
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP------- 251
C + +IR S++ L+AEM IC+ +C TGG + VA++E H+K+L+ E PPP
Sbjct: 234 ACIKDRIRISIVALAAEMKICREICDKTGGQFGVAMNEGHYKDLLFELIPPPAQRALTSK 293
Query: 252 AIAEFAIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICG 310
A + A A+L+ MGFP R + S S+C CH E+K G+ CPRC A+VC++PTDC ICG
Sbjct: 294 AGSGGATADLMIMGFPTRLPDTSPPSLCVCHSELK-SEGFLCPRCLAKVCDVPTDCDICG 352
Query: 311 LQLVSSPHLARSYHHLFPIAPFDEV 335
L +VSSPHLARSYHHLFP+ P+ V
Sbjct: 353 LMIVSSPHLARSYHHLFPVKPYTAV 377
>gi|341877728|gb|EGT33663.1| hypothetical protein CAEBREN_16370 [Caenorhabditis brenneri]
Length = 376
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/396 (39%), Positives = 218/396 (55%), Gaps = 40/396 (10%)
Query: 21 DDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRR----------- 68
DD+ G WE YA+ + E L EDE G + + A Y A +R+
Sbjct: 2 DDDEQKGY-TWEAGYAEGLNINEVLVEDEGGSIE--KSIAKYVADSKRKARLEKRPEKIR 58
Query: 69 ---LRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 125
+R +V +R M PSR VV K +++F+ FF+QNP++QIGL+T KD
Sbjct: 59 LGIMRHIMIVIDCSRFMTNKAMP--PSRFVVVMKALQSFLERFFEQNPIAQIGLITCKDR 116
Query: 126 VANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYS 183
A LT + G+ +AL M + C GD SLQNAL L L +P + REVLI+ +
Sbjct: 117 KAERLTMMTGNIRVLKEALNSMSEAFCGGDFSLQNALQLACANLKGMPGHVSREVLIVMA 176
Query: 184 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 243
ALS+ DPG+I TI+ K IRCS IGLSAEMFICK + + T G YSVALD H + L
Sbjct: 177 ALSSIDPGNIFSTIETMKRMNIRCSAIGLSAEMFICKEMAKATKGEYSVALDPDHLQLLF 236
Query: 244 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK--VGVGYTCPRCKARVCE 301
+H PP + A+ + N I +GFP + S C CH + K G+ C +C AR C
Sbjct: 237 SKHTLPPSS-AKSSECNAIHVGFPHHELIKTRSFCVCHPDSKPISSRGFICTQCGARHCS 295
Query: 302 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS 361
+P +C +C L LV++P LAR++ HL P+A F ++ + +R +C+ C+ L S
Sbjct: 296 IPAECPVCKLTLVAAPQLARAFRHLQPLAAFQQI---------DVTRGSCYACETRLTSE 346
Query: 362 GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 397
G + C KC+ FCL+CD +HESLH CPGC+
Sbjct: 347 GFR------CEKCRLVFCLDCDTLLHESLHVCPGCK 376
>gi|149248450|ref|XP_001528612.1| suppressor of stem-loop protein 1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448566|gb|EDK42954.1| suppressor of stem-loop protein 1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 509
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 162/462 (35%), Positives = 234/462 (50%), Gaps = 106/462 (22%)
Query: 30 AWERSYADDRSWEALQEDE--SGFLRPIDNSAFYHAQYR---------RRLRDRSLVATT 78
AWE Y RSW+ +++DE +G + S + + + +R R+LV
Sbjct: 59 AWEDEY--QRSWDIVKDDEWGNGSFEAMVQSIIENRKKKIMKNPSVPYQRGIIRTLVIAI 116
Query: 79 ARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPE 138
Q AE D RP+R+++ ++ FV EFFDQNP+SQIG+V +++GVAN ++++ G P+
Sbjct: 117 DGSQAMAEKDLRPTRLSMTLNYLQEFVVEFFDQNPISQIGIVLMRNGVANLVSEVSGLPQ 176
Query: 139 SHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLILYSAL 185
HI L K GD SLQN L++ + LL S + +E+L++ +L
Sbjct: 177 YHIDKLRQLKARQHNKFEPKGDPSLQNTLEMARSLLKFNFGTSSNNTKNSKEILVVLGSL 236
Query: 186 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG--------GSYSVALDES 237
T DPG+I +TI+ + +I+ VIGLSA++ IC+ L T +Y V ++E
Sbjct: 237 FTSDPGNIHKTIEGLVKDEIKVRVIGLSAQVAICQELVNRTNHEPKNTMSKNYGVIMNEY 296
Query: 238 HFKELIMEHAPPPPAIAEF------------AIANLIKMGFPQRA--------------- 270
HFKEL+M+ P P EF A +IKMGFP +A
Sbjct: 297 HFKELLMDCVTPLPLTEEFRKPTESTNQGGTAGVPVIKMGFPSKAQPNVTSAIGNTEFTV 356
Query: 271 ----------GEGS--------ISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 312
+GS +S S + + +GY CP+CK++VC LPT C +CGL
Sbjct: 357 EFPNLNASYPTQGSAESKDVIEVSNNSLRQSASLIIGYRCPQCKSKVCNLPTICPVCGLM 416
Query: 313 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ----------------Q 356
L+ S HLARSYHHL P+AP+ EV D C+GCQ
Sbjct: 417 LILSTHLARSYHHLVPLAPYVEVEVKSAYDSEE-----CYGCQLRFPKGVDLKVEKKSLD 471
Query: 357 SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
S++SS K CPKCKK FC+ CD+++HE LHNCPGCE+
Sbjct: 472 SMISSRYK------CPKCKKDFCINCDVFVHEVLHNCPGCEN 507
>gi|226295046|gb|EEH50466.1| suppressor of stem-loop protein [Paracoccidioides brasiliensis
Pb18]
Length = 518
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 157/454 (34%), Positives = 215/454 (47%), Gaps = 69/454 (15%)
Query: 6 RKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQY 65
R +G A ++ G WE S R+WE L E G +R +
Sbjct: 34 RPSASGRAARSKDARRRKKGRGGAEWEVS----RTWETLVEGADGTIRATVEGLLEAGKR 89
Query: 66 RRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ 116
RR LRD R L+ +E D RP+R + + + FVREFFDQNP+SQ
Sbjct: 90 RRVLRDTTPLQRGIIRHLILILDLSSAMSEKDLRPTRYLLTLRYAQDFVREFFDQNPISQ 149
Query: 117 IGLVTVKDGVANCLTDLGGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYG 174
+G+V ++DG+A ++D+ G+P HI A+ G G SLQNAL++ +G L PS+G
Sbjct: 150 LGVVGMRDGLAVRISDMSGNPTEHILAIQGLRAKDPKGMPSLQNALEMARGALFHTPSHG 209
Query: 175 HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SY 230
REVLI+Y AL + DPGDI +TI KI V+GL+A++ IC+ L T Y
Sbjct: 210 TREVLIIYGALLSSDPGDIHKTITSLITDKIHVYVLGLAAQVSICQELVTRTNNGDDSGY 269
Query: 231 SVALDESHFKELIMEHAPPPPAIAEFAI---------------ANLIKMGFPQRAGEGSI 275
+VA++E HF+EL++ PP L+ MGFP R
Sbjct: 270 NVAMNEQHFRELVLNVTTPPATTLASHTAAAAANGTGTNPSTDGTLLPMGFPNRHLTPHP 329
Query: 276 SICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 335
++C+CH GY CPRC +VC LP C C L L+ S HLARSYHHLFP+ + EV
Sbjct: 330 TLCACHSTPSRS-GYLCPRCCTKVCTLPASCPSCNLTLILSTHLARSYHHLFPLMNWVEV 388
Query: 336 TPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA------------------------- 370
+ R CF C PG +V
Sbjct: 389 SWRKAARAEAEGRVGCFACGVGF---AGVPGEFVGAEGDEEREEEEDGKGEGKGASRGIS 445
Query: 371 ------CPKCKKHFCLECDIYIHESLHNCPGCES 398
C C+ HFC++CD++ HE +HNCPGC+S
Sbjct: 446 VSGRYECLVCRCHFCIDCDVFAHEVVHNCPGCQS 479
>gi|240277005|gb|EER40515.1| transcription factor TFIIH complex subunit Ssl1 [Ajellomyces
capsulatus H143]
gi|325094945|gb|EGC48255.1| transcription factor TFIIH [Ajellomyces capsulatus H88]
Length = 505
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 163/427 (38%), Positives = 225/427 (52%), Gaps = 63/427 (14%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
GG E WE S R+WE L E G + + +R LRD R L+
Sbjct: 68 GGAE-WEVS----RTWETLVESADGTISATVEDLLGAGKRKRLLRDTTPLQRGIIRHLIL 122
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
AE D RP+R + + + FV EFF+QNP+SQ+G++ ++DG+A ++D+ G+
Sbjct: 123 VLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRDGLAVRISDMSGN 182
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P HI A+ + G SLQNAL++ +G L P++G REVLI++ AL + DPGDI
Sbjct: 183 PTDHIMAIQALRPKDPKGMPSLQNALEMARGTLFHTPTHGTREVLIIFGALLSSDPGDIH 242
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIME-HAPP 249
+TI KIR S+IGL+A++ IC+ LC T Y +AL+E HF+EL M APP
Sbjct: 243 QTITALVADKIRISIIGLAAQVAICRDLCGRTNNGDDTVYGIALNEQHFRELFMNVTAPP 302
Query: 250 PPAIAEFAI------------------ANLIKMGF--PQRAGEGSISICSCHKEVKVGVG 289
P +A + ++L+ MGF + S+C+CH + G
Sbjct: 303 PTTVAPTSTPTASSANGPKTTTTNTTTSSLLMMGFPSLTLTTTPTPSLCACHSKPSRA-G 361
Query: 290 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS 349
Y C RC A+VC LP+ C CGL L+ S HLARSYHHLFP+ + EV+ R RS S
Sbjct: 362 YLCCRCNAKVCTLPSSCPCCGLTLILSTHLARSYHHLFPLMNWVEVS--WRRAARKRSAS 419
Query: 350 TCFGCQQSL-----LSSGN-----KPGLYVA--------CPKCKKHFCLECDIYIHESLH 391
CF C L SG K L V CP C+ HFC++CD++ HE +H
Sbjct: 420 -CFACGVGFPRMPKLVSGEPEETAKAALGVGVSVSGRYECPVCECHFCIDCDVFAHEVVH 478
Query: 392 NCPGCES 398
NCPGC+S
Sbjct: 479 NCPGCQS 485
>gi|322700310|gb|EFY92066.1| TFIIH basal transcription factor complex p47 subunit , putative
[Metarhizium acridum CQMa 102]
Length = 457
Score = 257 bits (657), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 162/420 (38%), Positives = 223/420 (53%), Gaps = 73/420 (17%)
Query: 27 GLEAWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSL 74
G +AWE+S RSWE +ED+ G L N A+ RRRL RD R +
Sbjct: 46 GEQAWEKS---KRSWETNLPEEDQDGIL----NLTVLEAEKRRRLMRDTTPLQRGIIRHM 98
Query: 75 VATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ AE D P+R + AFVRE+F+QNP+SQ+G++ ++DGVA ++DL
Sbjct: 99 MLVLDMSFAMAEKDLLPTRYRLTISYALAFVREYFEQNPISQLGIIGMRDGVAVRISDLS 158
Query: 135 GSPESHIKALMGKLGCS--GDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
G+P HI+ L G G+ SLQNAL++ +G L PS+G REVLI+Y AL + DPGD
Sbjct: 159 GNPAEHIERLKAVEGQDPQGNPSLQNALEMCRGALFHTPSHGTREVLIIYGALLSSDPGD 218
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAP 248
I ETI KIR S++GLSA++ IC LC T Y++A+DE HF++L +
Sbjct: 219 IHETIANLVTDKIRVSIVGLSAQVAICADLCSRTNAGDDSQYNIAMDEVHFRDLFLASTT 278
Query: 249 PPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTD 305
PP AE + A+L+ MGFP R A G+IS C+CH + + GY
Sbjct: 279 PPVTRTAEQSTASLLMMGFPSRTLAPGGAISFCACHSK-PLREGYNS------------- 324
Query: 306 CRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGC---------- 354
CGL L+ S HLARSYHHLFP+ + EV+ +RST CF C
Sbjct: 325 ---CGLTLILSTHLARSYHHLFPLRNWVEVSWT------EATRSTACFSCLCPFPEPPKD 375
Query: 355 -----------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSN 403
+ L + G AC C HFC++CD++ H+ +HNCPGC+S+ H +
Sbjct: 376 KVDGVEKSKDDTRHLKAKGVSESGRYACEVCGNHFCIDCDVFAHQVIHNCPGCQSIVHHD 435
>gi|403414452|emb|CCM01152.1| predicted protein [Fibroporia radiculosa]
Length = 377
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 194/325 (59%), Gaps = 28/325 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLR---------PIDNSAFYHAQYRRRLRDRSLVATTAR 80
AWE SY RSW+ +QEDE+G L+ A RR R LV
Sbjct: 58 AWEASYT--RSWDTVQEDEAGSLQGAVEDLIARGRRRRLLAPATAIRRAIIRHLVLLLDL 115
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+ D RP+R ++ + F+ E+FDQNPL QIG+V ++ G+ N L E H
Sbjct: 116 SSAMMDRDMRPTRFDLMLQYAREFITEWFDQNPLGQIGIVGMRGGIGNPQDVLKAISERH 175
Query: 141 IKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKC 200
KL +G+ SLQNA+D+ + + +P++ RE+LI++ +L+TCDPG+I +++ C
Sbjct: 176 ------KLEPNGEPSLQNAIDMARASMGHLPTHSSREILIIFGSLTTCDPGNIHDSLDDC 229
Query: 201 KESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP--AIAEFA- 257
+ +IR SV+ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP A+A
Sbjct: 230 VKDRIRISVVALAAEMKICRELCDKTGGQFGVALNEGHFKDLLFELIPPPAQRAVARTKG 289
Query: 258 ------IANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKARVCELPTDCRICG 310
A+L+ MGFP R + S S+C+CH ++K G+ CPRC A+VC++PTDC ICG
Sbjct: 290 GPAGNPSADLMMMGFPTRLPDTSAPSLCACHSQLK-SEGFLCPRCCAKVCDVPTDCDICG 348
Query: 311 LQLVSSPHLARSYHHLFPIAPFDEV 335
L +VSSPHLARSYHHLFP+ + V
Sbjct: 349 LMIVSSPHLARSYHHLFPVKTYKAV 373
>gi|154276968|ref|XP_001539329.1| suppressor of stem-loop protein 1 [Ajellomyces capsulatus NAm1]
gi|150414402|gb|EDN09767.1| suppressor of stem-loop protein 1 [Ajellomyces capsulatus NAm1]
Length = 506
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 162/427 (37%), Positives = 224/427 (52%), Gaps = 63/427 (14%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
GG E WE S R+WE L E G + + +R LRD R L+
Sbjct: 69 GGAE-WEVS----RTWETLVESADGTISATVEDLLGAGKRKRLLRDTTPLQRGIIRHLIL 123
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
AE D RP+R + + + FV EFF+QNP+SQ+G++ ++DG+A ++D+ G+
Sbjct: 124 VLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRDGLAVRISDMSGN 183
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P HI A+ + G SLQNAL++ +G L P++G REVLI++ AL + DPGDI
Sbjct: 184 PTDHIMAIQALRPKDPKGTPSLQNALEMARGALFHTPTHGTREVLIIFGALLSSDPGDIH 243
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIME-HAPP 249
+TI KIR S+IGL+A++ IC+ LC T Y VAL+E HF+EL M+ APP
Sbjct: 244 QTITALVADKIRISIIGLAAQVAICRDLCARTNNGDDTVYGVALNEQHFRELFMDVTAPP 303
Query: 250 PPAIAEFAIAN------------------LIKMGF--PQRAGEGSISICSCHKEVKVGVG 289
+A + L+ MGF + S+C+CH + G
Sbjct: 304 ATTVAPTSTPTAFSANGPKTTTTSTTTSSLLMMGFPSLTLTTTPTPSLCACHSKPSRA-G 362
Query: 290 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS 349
Y C RC A+VC LP+ C CGL L+ S HLARSYHHLFP+ + EV+ R RS S
Sbjct: 363 YLCCRCNAKVCTLPSSCPCCGLTLILSTHLARSYHHLFPLMNWVEVS--WRRAARKRSAS 420
Query: 350 TCFGCQQSL-----LSSGNKP---------GLYVA----CPKCKKHFCLECDIYIHESLH 391
CF C L SG G+ V+ CP C+ HFC++CD++ HE +H
Sbjct: 421 -CFACGVGFPRMPKLVSGEPEETAKAAVGVGVSVSGRYECPVCECHFCIDCDVFAHEVVH 479
Query: 392 NCPGCES 398
NCPGC+S
Sbjct: 480 NCPGCQS 486
>gi|322708259|gb|EFY99836.1| TFIIH basal transcription factor complex p47 subunit , putative
[Metarhizium anisopliae ARSEF 23]
Length = 456
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 164/421 (38%), Positives = 223/421 (52%), Gaps = 75/421 (17%)
Query: 27 GLEAWERSYADDRSWEA--LQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSL 74
G +AWE+S RSWE +ED+ G L N A+ RRRL RD R +
Sbjct: 45 GEQAWEKS---KRSWETNLPEEDQDGIL----NLTVLEAEKRRRLMRDTTPLQRGIIRHM 97
Query: 75 VATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ AE D P+R + AFVREFF+QNP+SQ+G++ ++DGVA ++DLG
Sbjct: 98 MLVLDMSFAMAEKDLLPTRYRLTISYALAFVREFFEQNPISQLGIIGMRDGVAVRISDLG 157
Query: 135 GSPESHIKALMGKLGCS--GDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
G+P HI+ L G G+ SLQNAL++ +G L PS+G REVLI+Y AL + DPGD
Sbjct: 158 GNPAEHIERLKAVEGQDPQGNPSLQNALEMCRGALFHTPSHGTREVLIIYGALLSSDPGD 217
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAP 248
I ETI KIR S++GLSA++ IC LC T Y++A+DE HF++L +
Sbjct: 218 IHETISNLIADKIRVSIVGLSAQVAICADLCSRTNAGDDSQYNIAMDEVHFRDLFLAGTT 277
Query: 249 PPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTD 305
PP AE A+L+ MGFP R A G+IS C+CH + + GY
Sbjct: 278 PPVTRTAEQNTASLLMMGFPSRTLAPGGAISFCACHSK-PLREGYNS------------- 323
Query: 306 CRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGC---------- 354
CGL L+ S HLARSYHHLFP+ + EV+ +RST CF C
Sbjct: 324 ---CGLTLILSTHLARSYHHLFPLRNWVEVSWA------EATRSTVCFSCLCPFPEPPKD 374
Query: 355 ------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHS 402
+ ++ G Y AC C HFC++CD++ H+ +HNCPGC+S H
Sbjct: 375 KIDGVEKSKDDTRHPKAKGVSESGRY-ACEVCGNHFCIDCDVFAHQVIHNCPGCQSTVHH 433
Query: 403 N 403
+
Sbjct: 434 D 434
>gi|71022397|ref|XP_761428.1| hypothetical protein UM05281.1 [Ustilago maydis 521]
gi|46101297|gb|EAK86530.1| hypothetical protein UM05281.1 [Ustilago maydis 521]
Length = 539
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 148/424 (34%), Positives = 216/424 (50%), Gaps = 73/424 (17%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTAR 80
+WE +Y RSW+A+ ED+SG L S ++ RR L+D R LV
Sbjct: 98 SWEATY--KRSWDAVAEDDSGSLESTVRSMIEGSKRRRVLKDVAPVQRGIIRHLVLLIDL 155
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
E D RP+R V + FV E+FDQNP+ Q+ ++ + G+A L +GG+ H
Sbjct: 156 SASMLEKDMRPNRFDVTLQYAREFVGEYFDQNPIGQLSIIGTRSGIAERLAMMGGNTVDH 215
Query: 141 IKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+L K L G+ SLQNAL++ + L +P+ RE+L ++ +L+TCDPG+I +TI
Sbjct: 216 TASLSNKRRLEPRGEPSLQNALEMARSSLVHLPASNSREILAIFGSLTTCDPGNIHDTIA 275
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP------- 251
+ IR S++ L+AE+ + K +C TGG++SVAL+E HF + + E PPP
Sbjct: 276 TLVKDNIRVSIVHLAAEVKVFKDVCTRTGGTFSVALNEGHFHDSLFELVPPPAVEGKPRR 335
Query: 252 ------AIAEFAI---------------ANLIKMGFPQR-AGEGSISICSCHKEVKVGVG 289
IA+ + +L++M FP R + ++C+CH + G G
Sbjct: 336 TRQHMVGIADGSTAMDAEDDDEDGVQAGVDLLQMAFPLRLPAHAAPTLCACHSRSR-GSG 394
Query: 290 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPI-----APFDEVTPLCLNDPR 344
Y CPRC +VC +PTDC +CG+ +V S HLARSYHHLFP+ P+ VTP
Sbjct: 395 YLCPRCGVKVCNVPTDCPVCGITIVMSTHLARSYHHLFPVPNWKAVPWSSVTP------- 447
Query: 345 NRSRSTCFGC-----------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIH 387
S CF C ++L +G P C +C FCLECD ++H
Sbjct: 448 -DSDGACFSCNVPFPSLQERKEKSAAANKALEEAGLSPSSRYRCGRCAIDFCLECDAFVH 506
Query: 388 ESLH 391
E LH
Sbjct: 507 EQLH 510
>gi|429848008|gb|ELA23542.1| tfiih basal transcription factor complex p47 subunit
[Colletotrichum gloeosporioides Nara gc5]
Length = 488
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 157/416 (37%), Positives = 218/416 (52%), Gaps = 67/416 (16%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSLVATTARIQKAAEMD 88
RSWE + E G L A A+ RRRL +D R LV E D
Sbjct: 54 RSWEEVTEGADGSLAV---GASLEAEKRRRLLKDTTPLQRGIIRHLVLVLDMSFAMTEKD 110
Query: 89 FRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL 148
P+R V FV+E+F+QNP+SQ+G++ ++DGVA ++D+ G+P H++ L
Sbjct: 111 MLPNRYRVTWAYAADFVKEYFEQNPISQLGIIGMRDGVALRISDMSGNPTDHLEKLKSFE 170
Query: 149 GC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIR 206
G SG+ SLQNAL++ +G L PS+G REVL+++ AL + DP DI ETI +IR
Sbjct: 171 GQDPSGNPSLQNALEMCRGALFHAPSHGTREVLVVFGALLSSDPADIHETISSLITDRIR 230
Query: 207 CSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPA-IAEFAIANL 261
SV+GL+A++ IC LC T YSV ++++HF++L++ PP A + A+L
Sbjct: 231 VSVVGLAAQVAICAELCSRTNSGDDTQYSVCMNDAHFRDLLLAATTPPVTRTAAQSTASL 290
Query: 262 IKMGFPQRA---GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPH 318
+ MGFP R GE + +IC+CH + GY C RC RVC LP +C CGL L+ S H
Sbjct: 291 LMMGFPSRTLVRGEAT-AICACHNK-PAREGYLCTRCSTRVCRLPIECPACGLTLILSTH 348
Query: 319 LARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC------------------------ 354
LARSYHHLFP+ + EV P + S C+ C
Sbjct: 349 LARSYHHLFPLRNWVEV-PWA----KAGSSKACYSCLTAFPEPPRASKKRDKEKANDNDG 403
Query: 355 ------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
S L ++ G Y AC C HFC++CD+Y HE +HNCPGC+S
Sbjct: 404 VTTTTPVAPTPVAPSELKGVSESGRY-ACTVCNSHFCIDCDVYAHEVIHNCPGCQS 458
>gi|302656432|ref|XP_003019969.1| hypothetical protein TRV_05937 [Trichophyton verrucosum HKI 0517]
gi|291183747|gb|EFE39345.1| hypothetical protein TRV_05937 [Trichophyton verrucosum HKI 0517]
Length = 515
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 201/337 (59%), Gaps = 31/337 (9%)
Query: 85 AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL 144
AE D RP+R + + + FV+EFF+QNP+SQ+G++ +KDG+A ++++ G+P H+ AL
Sbjct: 148 AEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGIMGMKDGIAVQISEMSGNPTEHMLAL 207
Query: 145 --MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 202
+ G SLQNAL++ +G L PS+G REV+I+ AL + DPGDI +TI
Sbjct: 208 HALRAEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLSSDPGDIHQTITSLVA 267
Query: 203 SKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPPAIAE-FA 257
K+R +IGL+A++ IC+ +C T SY VA+DE H +L+++ PP ++ ++
Sbjct: 268 DKVRVGIIGLAADVAICREICAKTNDGNDSSYGVAIDEKHLWDLLLDVTTPPVTYSQRYS 327
Query: 258 IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSP 317
+L+ MGFP R E S+C+CH + G GY C RC ++VC LP +C C L L+ S
Sbjct: 328 SNSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPTCNLTLILST 386
Query: 318 HLARSYHHLFPIAPFDEVTPLCLNDPRNR-SRS-TCFGCQQSL----------LSSGNKP 365
HLARSYHHLFP+ + EV P R SRS +CF C + +
Sbjct: 387 HLARSYHHLFPLINWVEV-------PWKRASRSVSCFACGNPFPAVPPRDKWDMRDRSIK 439
Query: 366 GLYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
G+ V+ C C HFC++CD++ HE +HNCPGC+S
Sbjct: 440 GMSVSSRYECTVCHHHFCIDCDVFAHEVVHNCPGCQS 476
>gi|339258242|ref|XP_003369307.1| general transcription factor IIH subunit 2 [Trichinella spiralis]
gi|316966476|gb|EFV51048.1| general transcription factor IIH subunit 2 [Trichinella spiralis]
Length = 403
Score = 254 bits (648), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 147/380 (38%), Positives = 211/380 (55%), Gaps = 34/380 (8%)
Query: 42 EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQK----------AAEMDFRP 91
E L++D+SG ++ +A H R+ + DR ++ E D P
Sbjct: 33 EVLEQDDSGSIQS-SVAAITHLAKRKHIIDRVKGVRLGILRHLCILLDCSSVMIEKDLLP 91
Query: 92 SRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH---IKALMGKL 148
SR V K + FV +FFDQNP+SQI ++T KD + L D GS H +KA+ ++
Sbjct: 92 SRFISVIKALSLFVDDFFDQNPISQISIITAKDKKTDKLVDFTGSARKHKEFLKAIAEEI 151
Query: 149 GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCS 208
SG+ SLQN+L+ +L +PS+ REVL++ +LSTCDPGDI E+++ K + IRC+
Sbjct: 152 P-SGEFSLQNSLETANEMLRHMPSHSSREVLVIMGSLSTCDPGDIEESLEILKRNNIRCN 210
Query: 209 VIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGF-- 266
I LSAEM+ICK + + T G Y+V +DE K L+ A PP A + ANLI+MG
Sbjct: 211 FIALSAEMYICKRIAKATNGKYAVIIDEDDLKTLLSVFALPPVATTQLG-ANLIRMGNSD 269
Query: 267 ------PQRAGEGSISICSCHKEVKVG----VGYTCPRCKARVCELPTDCRICGLQLVSS 316
++ G I H E +G VG+ CP+C + C +P +C+ICGL L S+
Sbjct: 270 FRRGLKTRKVGHFVFGIHMKHGE-GIGKLTCVGFICPQCNFKYCFVPMECQICGLVLASA 328
Query: 317 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKK 376
PHLARSY HL+PI PF+E D + C GC ++ YV CP C++
Sbjct: 329 PHLARSYQHLYPILPFEEKAI----DKHMKKELYCAGCFSAIEVKVMFDVSYV-CPGCRQ 383
Query: 377 HFCLECDIYIHESLHNCPGC 396
FC+ CD+ IHE++H+CPGC
Sbjct: 384 DFCINCDLLIHETMHSCPGC 403
>gi|354547034|emb|CCE43767.1| hypothetical protein CPAR2_214110 [Candida parapsilosis]
Length = 498
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 164/469 (34%), Positives = 237/469 (50%), Gaps = 94/469 (20%)
Query: 4 SERKRLNGEAEEEEED-------EDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPID 56
S+ KR NG A E+E +D++ +G EA +S ++R + ++ + F R I
Sbjct: 48 SDLKRANGYAWEDEYQRSWDIVKDDESGSGSFEAMVQSIIENRKKKIMKNPSTPFQRGII 107
Query: 57 NSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ 116
R+LV AE D RP+R+++ + FV EFFDQNP+SQ
Sbjct: 108 ---------------RTLVIIVDGTLAMAEKDLRPTRLSLTLNYLSEFVVEFFDQNPISQ 152
Query: 117 IGLVTVKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL-- 167
+G++ +++GVAN ++++ GSP+ HI L K GD SLQN L++ + LL
Sbjct: 153 LGIILMRNGVANLISEVSGSPQYHIDRLRQLKARQHNKYEPKGDPSLQNCLEMARSLLKF 212
Query: 168 ----SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLC 223
+ S +E+L+++ +L T DPGDI +TI + I+ SVIGLSA++ IC+ L
Sbjct: 213 NFGSASNNSKNSKEILLVFGSLFTSDPGDIHKTIDSLVKDNIKVSVIGLSAQVAICQELV 272
Query: 224 QDTG--------GSYSVALDESHFKELIMEHAP--PPPAIAEFAIAN----LIKMGFPQR 269
T Y V ++E+HFKEL+M+ P P E I LIKMGFP +
Sbjct: 273 NKTNHESRNSSSKHYGVIMNETHFKELLMDCVTPLPLPESEEIKIETKGVPLIKMGFPSK 332
Query: 270 AGEGSISICSCHK------------------------EVKVGV------GYTCPRCKARV 299
+ S + EV G+ GY CP+CK++V
Sbjct: 333 VQPNATSTIGNSEYTVEFPQLNASYPTQGSNDSKDVVEVNSGLAMSQTFGYQCPQCKSKV 392
Query: 300 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ---- 355
C LPT C +CGL L+ S HLARSYHHL P+AP+ EV PL + R C+GCQ
Sbjct: 393 CNLPTICPVCGLMLILSTHLARSYHHLVPLAPYKEV-PLS----TSYDREYCYGCQLIFP 447
Query: 356 ---QSLLSSGNKPGLYVA---CPKCKKHFCLECDIYIHESLHNCPGCES 398
+S ++G L + C C FC+ CD++IHE LHNCPGCE+
Sbjct: 448 SGVKSTKNTGTIDSLTSSRYRCANCCNDFCINCDVFIHEVLHNCPGCEN 496
>gi|297603026|ref|NP_001053274.2| Os04g0508900 [Oryza sativa Japonica Group]
gi|255675611|dbj|BAF15188.2| Os04g0508900, partial [Oryza sativa Japonica Group]
Length = 173
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 117/153 (76%), Positives = 140/153 (91%)
Query: 84 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 143
A+EMD+RPSRMAVVAK E F+REFFDQNPLS +G+VT+KDG+++ LT++GGSPES IKA
Sbjct: 2 ASEMDYRPSRMAVVAKYAEVFIREFFDQNPLSHVGIVTMKDGISHRLTEIGGSPESQIKA 61
Query: 144 LMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKES 203
LMGKL CSG+ SLQNAL+LV G L Q+PSYGH+EVL LYSAL+TCDPGDIMETI KCK+S
Sbjct: 62 LMGKLECSGEPSLQNALELVHGYLDQVPSYGHKEVLFLYSALNTCDPGDIMETIAKCKKS 121
Query: 204 KIRCSVIGLSAEMFICKHLCQDTGGSYSVALDE 236
KIRCSVIGL+AE+FICK+LC++TGGSY+VALDE
Sbjct: 122 KIRCSVIGLAAEIFICKYLCEETGGSYTVALDE 154
>gi|193627420|ref|XP_001947532.1| PREDICTED: general transcription factor IIH subunit 2-like
[Acyrthosiphon pisum]
Length = 388
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 223/386 (57%), Gaps = 28/386 (7%)
Query: 31 WERSYADDRSWEALQEDESGFLR-----PIDNSAFYHAQYRRRLR---DRSLVATTARIQ 82
WE Y +++WE ++EDE G + I+ S A + +R R L
Sbjct: 11 WEGGY--EKTWEEVKEDEGGNVEWSVKEIIEKSKRLLATRQPNVRLGMMRHLFVIVDSSN 68
Query: 83 KAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIK 142
E D +P+R K ++ F++++FDQNP+SQ+GL+T ++ A +++L G+ + H++
Sbjct: 69 SMVEKDLKPTRQLCTYKLLQDFIQDYFDQNPISQLGLITTRNSSAERISELSGNRKYHLE 128
Query: 143 ALMGKLG----CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
L G C+G S+QN+L++ ++ +PS+ +E+LI+ S+LS+CDPG+I +I+
Sbjct: 129 ELKKTFGDFNYCNGLMSVQNSLEIALSVMKMLPSHTSKEILIIGSSLSSCDPGEINTSIE 188
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
K IR S+I L+AE+ + +HLC +T G ++V +D+ HFK ++ P P +
Sbjct: 189 MLKTHNIRVSMIHLAAEVRMFRHLCNETKGKHNVIVDDVHFKHILWSLVEPVP-LPNSVD 247
Query: 259 ANLIKMGFPQRAGEG-SISICSCH--KEVKVGV-GYTCPRCKARVCELPTDCRICGLQLV 314
A+ +KMGFPQ + + CSCH + K+ G+ CP+C ++ CELP +C+ CGL LV
Sbjct: 248 ASCVKMGFPQELEQKPPFTTCSCHLAEGGKLNAKGFFCPQCNSKYCELPVECKCCGLILV 307
Query: 315 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKC 374
SS HLARS HHL PI PF ++ + S + C+GC++ + +Y C C
Sbjct: 308 SSLHLARSLHHLVPIKPFIKI------ELEEGSSAYCYGCRKRIKVPAE--NVYF-CESC 358
Query: 375 KKHFCLECDIYIHESLHNCPGCESLR 400
KKH+C CDIY+H +LH CPGC R
Sbjct: 359 KKHYCDGCDIYVHNTLHVCPGCAVKR 384
>gi|344233967|gb|EGV65837.1| hypothetical protein CANTEDRAFT_118624 [Candida tenuis ATCC 10573]
Length = 488
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/450 (34%), Positives = 235/450 (52%), Gaps = 86/450 (19%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLV 75
G AWE Y R+W+ +++D+SG ++ ++ +++ R+LV
Sbjct: 47 NGAYAWEDEYQ--RTWDIVKDDDSGQTLESLIQNMIESRKKKIMKNPTAPYQRGIIRTLV 104
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
E D RP+R +++ ++ FV EFFDQNP+SQ+G+V +++G+++ ++D+ G
Sbjct: 105 VVIDGSSIMLEKDLRPNRFSMMLSLLQEFVVEFFDQNPISQLGIVLMRNGISDVVSDVNG 164
Query: 136 SPESH---IKALMGK----LGCSGDSSLQNALDLVQGLLSQIPSYGH--------REVLI 180
SP+ H I+ L GK GD SLQNAL+L + LL ++G+ +E+LI
Sbjct: 165 SPQFHLDKIRQLRGKQHNRFEPKGDPSLQNALELSRSLLRY--NFGNNINDTKNSKEILI 222
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--------YSV 232
++ AL T DPGDI +TI + I+ VIGLSA++ IC+ + T + Y V
Sbjct: 223 IFGALFTSDPGDIHKTISSLVKDNIKVKVIGLSAKVAICQEIVNKTNHTSNNFNNPNYGV 282
Query: 233 ALDESHFKELIMEHAPPPPAIAE-------FAIANLIKMGFPQRAGEGS----------- 274
++ESHFKEL+M+ P P E L+KMGFP +
Sbjct: 283 IMNESHFKELLMDCVVPLPITVEQQKEIEASKSVPLLKMGFPTKVQPTLSSSSGGHSLDF 342
Query: 275 ISICSCH--------------KEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLA 320
I IC+CH ++ +GY CP+C ++VC LPT C ICGL L+ S HLA
Sbjct: 343 IQICACHSGSRTENGSDAAAIQQSSSVIGYRCPQCSSKVCSLPTVCPICGLMLILSTHLA 402
Query: 321 RSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL------LSSGNKPGLYVA---- 370
RSYHHL P+ ++EV P+ + P S C+GC + +K L
Sbjct: 403 RSYHHLVPLVDYEEV-PVKGSYP----SSFCYGCLLQFPEGIENIHKDSKEKLETMSSSR 457
Query: 371 --CPKCKKHFCLECDIYIHESLHNCPGCES 398
C KCK FC++CD+++HE+LHNCPGCE+
Sbjct: 458 YRCKKCKNDFCIDCDVFVHETLHNCPGCEN 487
>gi|308501637|ref|XP_003113003.1| hypothetical protein CRE_25217 [Caenorhabditis remanei]
gi|308265304|gb|EFP09257.1| hypothetical protein CRE_25217 [Caenorhabditis remanei]
Length = 376
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/395 (38%), Positives = 216/395 (54%), Gaps = 40/395 (10%)
Query: 21 DDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRR----------- 68
DD G WE YA+ + + L EDE G + + A Y A +R+
Sbjct: 2 DDEEQKGY-TWEAGYAEGLNINDVLVEDEGGSIE--KSIAKYVADSKRKARLAKRPERIR 58
Query: 69 ---LRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 125
+R +V +R + M PSR VV K +++F+ FF+QNP++QIGL+T KD
Sbjct: 59 LGIMRHVMIVIDCSRFMTSKAMP--PSRFVVVMKALQSFLERFFEQNPIAQIGLITCKDR 116
Query: 126 VANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYS 183
A +T + G+ ++L + + C GD SLQNAL L L +P + REV+I+ +
Sbjct: 117 KAERMTMMTGNIRVLKESLNSLTEAFCGGDFSLQNALQLACANLKGMPGHVSREVVIVMA 176
Query: 184 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 243
ALS+ DPG+I TI+ K IRCS IGLSAEMFICK + + T G YSVALD H + L
Sbjct: 177 ALSSIDPGNIFSTIESMKRMNIRCSAIGLSAEMFICKEMAKATKGEYSVALDPDHLQLLF 236
Query: 244 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK--VGVGYTCPRCKARVCE 301
+H PP + A+ + N I +GFP + S C CH + K G+ C +C AR C
Sbjct: 237 SKHTLPPSS-AKSSECNAIHVGFPHHELIKTRSFCVCHPDSKPVSSRGFICTQCGARHCS 295
Query: 302 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS 361
+P +C +C L LV++P LAR++ HL P+A F ++ + +R C+ C+ L S
Sbjct: 296 IPAECPVCKLTLVAAPQLARAFRHLQPLAAFQQI---------DVARGQCYACETRLASE 346
Query: 362 GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
G + C KC+ FCL+CD +HESLH CPGC
Sbjct: 347 GFR------CEKCRSVFCLDCDTLLHESLHVCPGC 375
>gi|448514642|ref|XP_003867164.1| RNA polymerase transcription factor TFIIH core component [Candida
orthopsilosis Co 90-125]
gi|380351502|emb|CCG21726.1| RNA polymerase transcription factor TFIIH core component [Candida
orthopsilosis Co 90-125]
Length = 511
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 163/472 (34%), Positives = 233/472 (49%), Gaps = 100/472 (21%)
Query: 4 SERKRLNGEAEEEEED------EDDNL-NGGLEAWERSYADDRSWEALQEDESGFLRPID 56
S+ KR NG A E+E +DD L +G EA ++ ++R + ++ + F R I
Sbjct: 61 SDLKRANGYAWEDEYQRSWDIVKDDELGSGSFEAMVQTIIENRKKKIMKNPSTPFQRGII 120
Query: 57 NSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ 116
R+LV AE D RP+R+++ + FV EFFDQNP+SQ
Sbjct: 121 ---------------RTLVIIVDGTLAMAEKDLRPTRLSLTLNYLSEFVVEFFDQNPISQ 165
Query: 117 IGLVTVKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL-- 167
+G++ +++GVAN ++++ GSP+ HI L K GD SLQN L++ + LL
Sbjct: 166 LGIILMRNGVANLISEVSGSPQYHIDRLKQLKARQHNKYEPKGDPSLQNCLEMARSLLKF 225
Query: 168 ----SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLC 223
+ S +EVL+++ +L T DPGDI +TI+ + I+ SVIGLSA++ IC+ L
Sbjct: 226 NFGSASNNSKNSKEVLLVFGSLFTSDPGDIHKTIESLVKDNIKVSVIGLSAQVAICQELV 285
Query: 224 QDTGGS--------YSVALDESHFKELIMEHAPPPP------AIAEFAIANLIKMGFPQR 269
T Y V ++E+HFKEL+M+ P P E LIKMGFP +
Sbjct: 286 NRTNNEPRNSSSKHYGVIMNETHFKELLMDCVTPLPLPESEETKVETKGVPLIKMGFPSK 345
Query: 270 AGEGSISICSCHK------------------------EVKVGV------GYTCPRCKARV 299
+ S + EV G+ GY CP+CK++V
Sbjct: 346 VQPNATSTIGNSEYTVEFPRLNASYPTQGSNDSRDIVEVNAGLVTSPSFGYQCPQCKSKV 405
Query: 300 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQQS 357
C LPT C +CGL L+ S HLARSYHHL P+AP+ E+ P + S T C+GCQ
Sbjct: 406 CNLPTICPVCGLMLILSTHLARSYHHLVPLAPYKEI-------PVSPSYDTDFCYGCQLK 458
Query: 358 LLSSGNKPGLYVA-----------CPKCKKHFCLECDIYIHESLHNCPGCES 398
SG K C C FC+ CD+++HE LHNCPGCE+
Sbjct: 459 -FPSGTKSTKETKTIDSITSSRYRCTNCNNDFCINCDVFVHEVLHNCPGCEN 509
>gi|190348397|gb|EDK40844.2| hypothetical protein PGUG_04942 [Meyerozyma guilliermondii ATCC
6260]
Length = 488
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/448 (33%), Positives = 239/448 (53%), Gaps = 85/448 (18%)
Query: 27 GLEAWERSYADDRSWEALQ-EDESGFLRPIDNSAFYHAQYRRR--LRD----------RS 73
G +WE Y R W+ ++ EDE+G + ++N + R++ +++ R+
Sbjct: 46 GGYSWEDRYK--RPWDIVKDEDEAG--QSLENVIQTMIENRKKKIMKNPTTPFQRGIIRT 101
Query: 74 LVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
L+ +E D RP+R A+ + ++ F+ EFFDQNP+SQ+G+V +++GV+N ++++
Sbjct: 102 LIVIIDGSSTMSEKDLRPNRFAMTLQLLQEFIVEFFDQNPISQLGIVMMRNGVSNLVSEV 161
Query: 134 GGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLI 180
GSP+ HI L + GD SLQN+L++ + +L + + +EVLI
Sbjct: 162 NGSPQYHIDKLRSLRSRQHNRFEPKGDPSLQNSLEMARAMLKYNFGTNMDDNKNSKEVLI 221
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT-------------- 226
L+ AL T DPGDI +TI + +I+ +IGLSA++ IC+ + T
Sbjct: 222 LFGALFTSDPGDIHKTIDNLIKDEIKVKIIGLSAQVSICQQIANKTNNLGSRTTGANSSS 281
Query: 227 GGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN----LIKMGFPQR------AGEGSIS 276
G +YSV ++E+H++EL+M+ P P A + LIKMGFP + A +++
Sbjct: 282 GSNYSVIMNETHYRELLMDCVVPLPVAATEKRSTVGVPLIKMGFPSKVSPPISASNNTVN 341
Query: 277 I-----CSCH---------KEVKVG-------VGYTCPRCKARVCELPTDCRICGLQLVS 315
+ C+CH V +G +GY CP+C++RVC LPT C CGL L+
Sbjct: 342 LDLPVLCACHPTNGSLESKDAVTIGAESSTSIIGYQCPQCRSRVCHLPTICPTCGLMLIL 401
Query: 316 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA----- 370
S HLARSYHHL P+ + EV + + C+GC +G G A
Sbjct: 402 STHLARSYHHLVPLREYKEVPAA-----DHYEGTHCYGCLLKFPEAGGPDGPLRASSRYR 456
Query: 371 CPKCKKHFCLECDIYIHESLHNCPGCES 398
CP C + FC++CD+++HE+LHNCPGCES
Sbjct: 457 CPTCARDFCIDCDVFVHETLHNCPGCES 484
>gi|393909764|gb|EJD75581.1| nucleolar protein 14 [Loa loa]
Length = 1208
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 146/396 (36%), Positives = 216/396 (54%), Gaps = 34/396 (8%)
Query: 19 DEDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
++DD G WE YAD + + L EDESG + + ++RL +R
Sbjct: 2 NDDDEPEGY--TWEVDYADGLNIRDVLHEDESGSIEKSVAKLILDTKRKKRLNNRPAKVR 59
Query: 78 TARIQ----------KAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVA 127
++ A+ PSR+AV K + F+ +F +QNP+SQ+G+V KD A
Sbjct: 60 LGIMRYLYLVIDCSFSMADKSIPPSRLAVTIKALNQFLDKFSEQNPISQVGIVVCKDKRA 119
Query: 128 NCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSAL 185
CL L G+ ++L + ++ C G+ SL N+L L P Y REV+++ ++L
Sbjct: 120 ECLIPLTGNVRLVKESLSTITEVLCHGEFSLHNSLMAAIKSLHSYPGYASREVILIVASL 179
Query: 186 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIME 245
STCDP +I T + K IRCSVI LSAE+FI + LC T G ++V LD +HF+ ++ E
Sbjct: 180 STCDPSNIFGTFELLKRYHIRCSVISLSAEVFIFRKLCSATSGCHNVILDSTHFEVILNE 239
Query: 246 HAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHK-EVKV--GVGYTCPRCKARVCEL 302
HA PP + + A +++++MGFP S S C CH+ E++ G G+ CP+C AR C L
Sbjct: 240 HANPPIS-SRNAESSVVRMGFPAHESIDSPSFCLCHQSEIRPSGGRGFFCPQCGARYCSL 298
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 362
P +CRIC L L+S+P LARS H+L P+ F+E+ + + CF C + L
Sbjct: 299 PVECRICKLTLISAPQLARSLHNLLPLPAFEEI---------DTTERVCFACIRQLDDKS 349
Query: 363 NKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
C CK FC++CD+ +HESL CPGC+S
Sbjct: 350 ------FVCKNCKSTFCIDCDVLLHESLQICPGCKS 379
>gi|380482556|emb|CCF41168.1| hypothetical protein CH063_11526 [Colletotrichum higginsianum]
Length = 480
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 154/421 (36%), Positives = 220/421 (52%), Gaps = 65/421 (15%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSLVATTARIQKAAEMD 88
RSWE + E G L A A+ RRRL RD R LV E D
Sbjct: 48 RSWEEVTEGADGSLAV---GASLEAEKRRRLLRDTTPLQRGIIRHLVLVLDMSFAMTEKD 104
Query: 89 FRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL 148
P+R V FV+E+F+QNP+SQ+ ++ ++DGVA ++D+ G+P H++ L
Sbjct: 105 MLPNRYRVAWAYAADFVKEYFEQNPISQLAIIGMRDGVAIRISDMSGNPTDHLEKLKTFE 164
Query: 149 GC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIR 206
G SG+ SLQNAL++ +G L PS+G REVLI++ AL + DPGDI +TI +IR
Sbjct: 165 GQDPSGNPSLQNALEMCRGALFHAPSHGTREVLIVFGALLSSDPGDIHDTITSLIADRIR 224
Query: 207 CSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPA-IAEFAIANL 261
S++GL+A++ IC LC T YSV ++++HF++L++ PP A + A+L
Sbjct: 225 VSIVGLAAQVAICAELCSRTNAGDDTQYSVCMNDAHFRDLLLAATTPPVTRTAAQSTASL 284
Query: 262 IKMGFPQRA---GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPH 318
+ MGFP R GE + ++C+CH + GY C RC RVC LP +C C L L+ S H
Sbjct: 285 LMMGFPSRTLAQGEAT-AVCACHNK-PAREGYLCTRCGTRVCRLPIECPACSLTLILSTH 342
Query: 319 LARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-------------------- 358
LARSYHHLFP+ + EV L +S++ C+ C +
Sbjct: 343 LARSYHHLFPLRNWVEV----LWAEATKSKA-CYSCLTTFPEPPKASRKKDKDKDSDGVP 397
Query: 359 --------------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNP 404
L ++ G Y C C HFC++CD+Y HE +HNCPGC+S P
Sbjct: 398 TTTPVAPTPVIASELKGVSESGRY-GCTVCGNHFCIDCDVYAHEVIHNCPGCQSDTRGAP 456
Query: 405 I 405
+
Sbjct: 457 M 457
>gi|358377786|gb|EHK15469.1| hypothetical protein TRIVIDRAFT_56425 [Trichoderma virens Gv29-8]
Length = 402
Score = 251 bits (640), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 147/357 (41%), Positives = 203/357 (56%), Gaps = 38/357 (10%)
Query: 72 RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLT 131
R LV AE D P+R + AFVRE+F+QNP+SQ+ +V ++DGVA ++
Sbjct: 28 RHLVLVLDMSFAMAEKDLLPTRYRLTLSYAAAFVREYFEQNPISQLAIVGMRDGVAVRVS 87
Query: 132 DLGGSPESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 189
D+GG+P H++ L G G+ SLQNAL++ +G L PS+G REVLI+Y AL + D
Sbjct: 88 DMGGNPAEHLERLRDLDGQDPQGNPSLQNALEMCRGALFHAPSHGTREVLIIYGALLSSD 147
Query: 190 PGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIME 245
PGDI +TI +IR SV+GLSA++ IC LC T Y+VA+DE+HFK+L +
Sbjct: 148 PGDIHDTISNLIAERIRVSVVGLSAQVAICAELCSRTNVGDDSQYNVAMDETHFKDLFLA 207
Query: 246 -HAPPPPAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCEL 302
PP E + ++L+ MGFP R A G+ S C+CH + GY C RC +VC L
Sbjct: 208 ITTPPVNRTKEQSTSSLLMMGFPSRTLAPGGTTSYCACHSK-PCREGYLCTRCGVKVCRL 266
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS-TCFGCQ------ 355
P++C CGL L+ S HLARSYHHLFP+ + EV P +RS CF CQ
Sbjct: 267 PSECPACGLTLILSTHLARSYHHLFPLRNWVEV-PWA-----EATRSIACFSCQCPFPEP 320
Query: 356 --------------QSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
++ ++ G Y C C HFC++CD++ H +HNCPGC+S
Sbjct: 321 PKPNKEKGKDEAPTKAPAKGVSESGRY-KCQVCGNHFCIDCDVFAHMVIHNCPGCQS 376
>gi|430811329|emb|CCJ31252.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 319
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 194/323 (60%), Gaps = 26/323 (8%)
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--M 145
D PSR V Q +FV E+F+QNPL+Q+G++ ++DG A ++ GG+P H+ L +
Sbjct: 5 DLIPSRYVVSIDQASSFVSEYFEQNPLAQLGIIGMRDGRAISISPYGGNPHEHLMTLSRL 64
Query: 146 GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 205
++ SGD+SLQNAL++ + +L +P +G REVL+++ +L++ DPGDI ETI E KI
Sbjct: 65 KQMDPSGDASLQNALEMARTILYPVPKHGTREVLLIFGSLTSFDPGDIYETINVLIEEKI 124
Query: 206 RCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPPPAIAEFA-IAN 260
R VIGLSA M +C+ +C++T SY + L+E HF +L+M+ PP +
Sbjct: 125 RVYVIGLSASMSVCQQICKETNAGDESSYGIVLNEQHFHDLLMQFVIPPALKKSHKFLET 184
Query: 261 LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLA 320
LI MGFP + E ++C+CH +V + GY CPRC ++VC LP +C C L L+ S HLA
Sbjct: 185 LIMMGFPSKLIENDETLCACHSDV-IKEGYLCPRCFSKVCSLPINCPCCDLTLILSTHLA 243
Query: 321 RSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGC---------QQSLLSSGNKPGLYVA 370
RSYHHLFP+ + EV P + ST C+ C S+ S + Y A
Sbjct: 244 RSYHHLFPLKNWIEV-------PWEEAYSTHCYACLIPFPEKHEVTSITHSVSISSRY-A 295
Query: 371 CPKCKKHFCLECDIYIHESLHNC 393
C +C KHFC++CD++ HE L C
Sbjct: 296 CSECHKHFCIDCDVFAHEILFEC 318
>gi|449300691|gb|EMC96703.1| hypothetical protein BAUCODRAFT_486555 [Baudoinia compniacensis
UAMH 10762]
Length = 459
Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 158/451 (35%), Positives = 232/451 (51%), Gaps = 66/451 (14%)
Query: 10 NGEAEEEEEDEDDNL---NGGLEA------------WERSYADDRSWEALQEDESGFLRP 54
+ E + E DEDD + +GG A WE + + + WE LQE G +
Sbjct: 5 DAEYDGEGPDEDDVMEVSDGGRRAMASRPKERAQARWEATASSN--WE-LQEAADGSIEG 61
Query: 55 IDNSAFYHAQYRRRLRD-----RSLVATTARIQKAA----EMDFRPSRMAVVAKQVEAFV 105
I + +R L+D R ++ T + + E D RP+R + FV
Sbjct: 62 ILGGLEEAGKRKRLLKDTTPLQRGIIRHTLLVLDLSSAMLEKDLRPTRHLLTINYTIMFV 121
Query: 106 REFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLV 163
RE+F+QNP+SQ+G+ +++G+A ++D+ G+P HI AL + G+ SLQNALD+
Sbjct: 122 REYFEQNPISQLGIFGMREGLAIRISDMSGNPNDHIAALKQLRSTEPKGNPSLQNALDMA 181
Query: 164 QGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLC 223
+ L PS+G REV+I+ AL + DPGDI +TI+ C +IR +IGL+A+M IC +C
Sbjct: 182 RAALYHTPSHGTREVVIVLGALLSSDPGDIHDTIKACIRDRIRVRIIGLAAQMHICAEIC 241
Query: 224 QDTGGS----YSVALDESHFKELIMEHAPPP------PAIAEFAIANLIKMGFPQRAGEG 273
+ T G Y+VA+DE +++ +M+ PP + A L+ MGFP R E
Sbjct: 242 RKTNGGDENYYNVAVDEVDYRQQLMDITTPPVLRSTDTEAQKHNQAALLMMGFPSRIVEE 301
Query: 274 SISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFD 333
++C+CH + G GY C RCKA+VC LP C C L L+ S HLARSYHHLFP+ +
Sbjct: 302 KPTLCACHGNLTRG-GYLCSRCKAKVCNLPATCPTCDLTLILSTHLARSYHHLFPLRNWV 360
Query: 334 EVTPLCLNDPRNRSRSTCFGC-----------------------QQSLLSSGNKPGLYVA 370
EV+ R CFGC ++ + G
Sbjct: 361 EVS---WTRARQEGSIQCFGCLTPFPRIPNPQEAVNGTEHDVASARTKRAEGASESSRYE 417
Query: 371 CPKCKKHFCLECDIYIHESLHNCPGCESLRH 401
C C +HFC++CD++ HE +HNCPGC+S H
Sbjct: 418 CETCGQHFCIDCDVFCHEVVHNCPGCQSNAH 448
>gi|324518504|gb|ADY47122.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 386
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 145/401 (36%), Positives = 209/401 (52%), Gaps = 44/401 (10%)
Query: 19 DEDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
+EDD G WE +YA+ + E L+EDESG + + A+ +RRL DR
Sbjct: 6 NEDDEQKG--YTWEIAYAEGLNIREVLEEDESGSVEKSVAKLIFEAKRKRRLTDRP---- 59
Query: 78 TARIQ---------------KAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 122
ARI+ E P+R+ V K + F+ +F +QNP+SQ+G++
Sbjct: 60 -ARIRLGIMRYVYIIIDCSLAMTEKTLLPTRLNVTLKVLNQFLEKFSEQNPISQVGIIIC 118
Query: 123 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 180
+D A L L G+ + +AL + + C G+ SLQN L + L P + RE++
Sbjct: 119 RDKRAERLIQLTGTIRAVKEALSTINEASCHGEFSLQNGLLVALRSLQHFPGHASREIIA 178
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 240
+ ++LSTCDP +I T + K + +RCSVIGLSAE+F+ K LC T G Y V LD HF
Sbjct: 179 IVASLSTCDPSNIFGTFEVLKRNNVRCSVIGLSAEVFVYKKLCSTTSGRYDVILDGDHF- 237
Query: 241 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKV---GVGYTCPRCKA 297
ELI+ PP + +++MGFP + C CH+ G G+ CP+C A
Sbjct: 238 ELILNEYTNPPVTKRNVESCVVRMGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQCGA 297
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQS 357
R C LP +CR+C L L+S+P LARS+HHL P+ F EV + + CFGC +
Sbjct: 298 RYCSLPVECRVCKLMLISAPQLARSFHHLLPLPAFKEV---------DTTSGICFGCAKP 348
Query: 358 LLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
L AC C ++C++CD+ +HESL CP C S
Sbjct: 349 LEQKS------FACKSCDANYCIDCDLLLHESLQLCPACPS 383
>gi|150864125|ref|XP_001382831.2| hypothetical protein PICST_29472 [Scheffersomyces stipitis CBS
6054]
gi|149385381|gb|ABN64802.2| component of RNA polymerase transcription factor [Scheffersomyces
stipitis CBS 6054]
Length = 489
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 155/452 (34%), Positives = 233/452 (51%), Gaps = 90/452 (19%)
Query: 30 AWERSYADDRSWEALQEDESG--FLRPIDNSAFYHAQYR---------RRLRDRSLVATT 78
+WE Y RSW+ +++DESG L I + + + + +R R+L+
Sbjct: 44 SWEDEYQ--RSWDIVKDDESGGRSLETIVRTIIENRKKKIMKNPTTPFQRGIIRTLIVII 101
Query: 79 ARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPE 138
+E D RPSR ++ + ++ FV EFFDQNP+SQ+G++ +++GV+N ++++ GSP+
Sbjct: 102 DGSATMSEKDLRPSRFSMTLQLLQDFVVEFFDQNPISQLGIILMRNGVSNLVSEVSGSPQ 161
Query: 139 SHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLILYSAL 185
HI + + GD SLQN+L++ + LL + + +EVL+++ AL
Sbjct: 162 YHIDKIRQLKSRQHNRYEPKGDPSLQNSLEMARSLLKFNFGNNANDTKNSKEVLLIFGAL 221
Query: 186 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG--------GSYSVALDES 237
T DPGDI +TI + +I+ +IGLSA++ IC+ L T +Y V ++ES
Sbjct: 222 FTSDPGDIHKTIDNLVKDEIKVKIIGLSAQVAICQDLVNRTNHQQKNISSKNYGVIMNES 281
Query: 238 HFKELIMEHAPPPP----AIAEFAIAN----LIKMGFPQRAGEGSISICSCHK------- 282
HFKEL M+ P P + E A AN +IKMGFP + S + ++
Sbjct: 282 HFKELFMDCVTPLPITTSQVNENAEANKGVPIIKMGFPTKIQPVLTSTLASNEYTIEFPQ 341
Query: 283 ----------------EVKVG----------VGYTCPRCKARVCELPTDCRICGLQLVSS 316
E+ G +GY CP+CK++VC LPT C +CGL L+ S
Sbjct: 342 LSASDPTHGLDDNQVVEINNGTDSSIQATNVIGYQCPQCKSKVCNLPTVCPVCGLMLILS 401
Query: 317 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----------QQSLLSSGNKPG 366
HLARSYHHL P+ PF EV P+ + CFGC +S S N
Sbjct: 402 THLARSYHHLVPLVPFKEV-PVS----SKYNSKHCFGCLLKFPKGVSNTKSKSSLENMTS 456
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
C KC FC++CD++IHE+LHNCPGCE+
Sbjct: 457 SRYRCMKCSHDFCIDCDVFIHETLHNCPGCEN 488
>gi|223999581|ref|XP_002289463.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974671|gb|EED93000.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 422
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 151/428 (35%), Positives = 217/428 (50%), Gaps = 72/428 (16%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR--------------------LR 70
WE + W +QED G + ++ +Q R+R LR
Sbjct: 3 WE-AVDSSSMWTDVQEDADGNILLTSSTQSLASQIRQRRHRLASTDLARSSKRLVRHMLR 61
Query: 71 DRSLVATTARIQKAAEMDFRPSRMAV--VAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 128
LV +R + + P+R+ + + FV E++DQNPL +G+V +DG A
Sbjct: 62 HVYLVLDASRWSREKDPALPPARLRLETIINLASEFVNEYYDQNPLGHLGVVICQDGEAE 121
Query: 129 CLTDLGGSPESHIKAL-------MGKLGCS--GDSSLQNALDLVQGLLSQIPSYGHREVL 179
LT LGGSP+ H AL M + G S G+ SLQN +++ L P YG RE++
Sbjct: 122 MLTTLGGSPKKHKLALGAALVTEMKRRGPSIGGEFSLQNGIEVAGRSLGYAPRYGSREII 181
Query: 180 ILYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH 238
++ SAL+TCDPGDI+ ET+ + + IR S + L AE+ ICK L + TGG V +D H
Sbjct: 182 VITSALATCDPGDILGETLPRLLHAGIRVSAVSLQAELHICKKLAEVTGGLAGVCMDSRH 241
Query: 239 FKELIMEHAPPPPAIA-------------------EFAIANLIKMGFPQRAGEGSISICS 279
++L+M HA PPP + I + MGFP R + S
Sbjct: 242 LRDLVMGHAIPPPVVNTSKADDGETTTAHNGRNHNHTMICEFVTMGFPSRDDDRR----S 297
Query: 280 CHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT-PL 338
GY CPRC++R +LP+DC +CGL+L+ +PHLAR++HHLFP+ PF+E+ L
Sbjct: 298 NRLIAFARTGYVCPRCRSRCSDLPSDCAVCGLRLILAPHLARTFHHLFPVRPFEELDEAL 357
Query: 339 CLNDPRNRSRSTCFGCQQSL----LSSGNKPG------LYVACPKCKKHFCLECDIYIHE 388
+N R CFGC + + + S + G L CP+C FC +CD Y+HE
Sbjct: 358 VINCDR-----CCFGCLKVIGCKPMDSTDGAGDEGESILRFQCPECHNAFCPDCDAYLHE 412
Query: 389 SLHNCPGC 396
+LHNCPGC
Sbjct: 413 TLHNCPGC 420
>gi|294654358|ref|XP_456408.2| DEHA2A01606p [Debaryomyces hansenii CBS767]
gi|199428818|emb|CAG84360.2| DEHA2A01606p [Debaryomyces hansenii CBS767]
Length = 514
Score = 248 bits (632), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 245/484 (50%), Gaps = 99/484 (20%)
Query: 4 SERKRLNGEAEEEEEDEDDNL---NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
S+R R +G + +L NGG AWE Y R W+ +++DE G
Sbjct: 40 SKRTRSSGMTHQPRSGAVGDLKSSNGGY-AWEDEYQ--RPWDIVKDDEDGRSLETIIQTM 96
Query: 61 YHAQYRRRLRD----------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFD 110
+ ++ +R+ R+LV +E D RP+R +++ ++ FV E+FD
Sbjct: 97 IENRKKKIMRNPTTPFQRGIIRTLVVIIDGSSVMSEKDLRPTRFSMMLSLLQEFVVEYFD 156
Query: 111 QNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSLQNALDLV 163
QNP+SQ+G++ +++GV+N ++++ GSP+ H+ + K GD SLQNAL++
Sbjct: 157 QNPISQLGIIMMRNGVSNLISEVNGSPQYHLDKIRQLKSRQHNKYEPKGDPSLQNALEMA 216
Query: 164 QGLLSQIPSYG--------HREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE 215
+ LL + ++G +E+LI++ AL T DPGDI +TI + +I+ VIGLSA+
Sbjct: 217 RSLL--MYNFGTNLNDTKNSKEILIIFGALFTSDPGDIHKTINSLVKDEIKVKVIGLSAQ 274
Query: 216 MFICKHLCQDT-------------GGSYSVALDESHFKELIMEHAPPPPAIAEFAI---- 258
+ IC+ L T G +Y V ++E HF+EL+M+ P P I
Sbjct: 275 VAICQELVNKTNNPGKSNTFWSAGGNNYGVIMNEIHFRELLMDCVIPLPVTTNAVIDENN 334
Query: 259 ---ANLIKMGFPQR------AGEGSISI-----CSCHKE----------------VKVGV 288
+IKMGFP + + ++S+ C+CH + +
Sbjct: 335 SKEVPIIKMGFPSKIQPVITSSTSNLSVDFPQLCACHPTQDSLESKNNDPTATLGTRSVI 394
Query: 289 GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR 348
GY CP+C +VC LPT C ICGL L+ S HLARSYHHL P+ + EV P+ + S
Sbjct: 395 GYECPQCNNKVCHLPTICPICGLMLILSTHLARSYHHLVPLGDYKEV-PVS----ESYSS 449
Query: 349 STCFGC--------QQSLLSSGNKPGL------YVACPKCKKHFCLECDIYIHESLHNCP 394
+ C+GC + + ++ K + C KC+ FC++CD+++HESLHNCP
Sbjct: 450 TYCYGCLLKFPSGIKNTDVNEDGKTKMDSLTSSRYRCGKCQNDFCIDCDVFVHESLHNCP 509
Query: 395 GCES 398
GCE+
Sbjct: 510 GCEN 513
>gi|164662116|ref|XP_001732180.1| hypothetical protein MGL_0773 [Malassezia globosa CBS 7966]
gi|159106082|gb|EDP44966.1| hypothetical protein MGL_0773 [Malassezia globosa CBS 7966]
Length = 349
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 194/351 (55%), Gaps = 43/351 (12%)
Query: 85 AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL 144
++ D RP+R + + FV ++FDQNP+ Q+ ++ +DG+A L+ +GG+ H L
Sbjct: 2 SDRDLRPTRFDLTLQLARQFVADYFDQNPIGQLAILCARDGLAERLSLMGGNTFDHGAVL 61
Query: 145 MG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 202
KL G+ S+QNAL++ L+ +PS RE+L + ++L++ DPG+I TI K +
Sbjct: 62 SSRRKLEPRGEPSIQNALEMALSSLTHLPSSNTREILFISASLTSVDPGNIYHTIDKLVD 121
Query: 203 SKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA--- 259
I+ SVI L+AEM + K C TGG ++V ++E H+KEL+M+H PP I E + +
Sbjct: 122 EHIQLSVISLAAEMHVLKDACARTGGDFNVVMNEDHYKELLMQHV-PPRVITEASSSSHL 180
Query: 260 ------NLIKMGFPQRAG-EGSISICSCHKEVKVG-------------VGYTCPRCKARV 299
+L+ MGFP+R S C+CH + G GYTCPRC ++V
Sbjct: 181 AHSNECDLLVMGFPRRIPFHTPASFCACHGRLVTGSRSLSYADRGAAPAGYTCPRCASKV 240
Query: 300 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC----- 354
C++PTDC CG+ ++ S HLARSYHHLFP+ ++ P+ S S CF C
Sbjct: 241 CQVPTDCPTCGITIIMSTHLARSYHHLFPVQNYE---PVAWEAVSTTSPSNCFACAFPFP 297
Query: 355 ---------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
++ S P CPKC +HFCLECD ++ E LH CPGC
Sbjct: 298 PRPSNLDETSHVVMDSTLAPSSRYMCPKCHQHFCLECDAFVQEQLHTCPGC 348
>gi|268573216|ref|XP_002641585.1| Hypothetical protein CBG09887 [Caenorhabditis briggsae]
Length = 376
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 152/395 (38%), Positives = 216/395 (54%), Gaps = 40/395 (10%)
Query: 21 DDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRR----------- 68
DD+ G WE YA+ + E L EDE G + + A Y A +R+
Sbjct: 2 DDDEQKGY-TWEAGYAEGLNINEVLVEDEGGSIE--KSIAKYVADSKRKARLTKRPEKIR 58
Query: 69 ---LRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 125
+R +V +R + M PSR VV K ++ F+ FF+QNP++QIGL+T KD
Sbjct: 59 LGIMRHVMIVIDCSRFMTSKAMP--PSRFVVVMKALQQFLERFFEQNPIAQIGLITCKDR 116
Query: 126 VANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYS 183
A+ LT + G+ ++L + + C GD SLQNAL L L +P + REV+I+ +
Sbjct: 117 KADRLTMMTGNIRILKESLSSLTEAFCGGDFSLQNALQLACVNLKGMPGHVSREVVIVMA 176
Query: 184 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 243
ALS+ DPG+I TI+ K IRCS IGLSAEMFICK + + T G YSVALD H L
Sbjct: 177 ALSSIDPGNIFSTIETMKRMNIRCSAIGLSAEMFICKEMAKATKGEYSVALDPDHLHLLF 236
Query: 244 MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK-VGV-GYTCPRCKARVCE 301
+H PP + A+ + N I +GFP + S C CH + K + + G+ C +C AR C
Sbjct: 237 SKHTLPPSS-AKSSECNAIHVGFPHHELIKTRSFCVCHPDSKPISLRGFICTQCGARHCS 295
Query: 302 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS 361
+P +C +C L LV++P LAR++ HL P+A F ++ +R +C+ C+
Sbjct: 296 IPAECPVCKLTLVAAPQLARAFRHLQPLAAFKQI---------EVTRGSCYACETRFSDE 346
Query: 362 GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
G + C KC+ FCL+CD +HESLH CPGC
Sbjct: 347 GFR------CEKCRLVFCLDCDTLLHESLHVCPGC 375
>gi|17555086|ref|NP_499239.1| Protein T16H12.4 [Caenorhabditis elegans]
gi|27923998|sp|P34567.3|TF2H2_CAEEL RecName: Full=General transcription factor IIH subunit 2; AltName:
Full=TFIIH basal transcription factor complex subunit 2
gi|15718246|emb|CAA83139.3| Protein T16H12.4 [Caenorhabditis elegans]
Length = 376
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 215/396 (54%), Gaps = 41/396 (10%)
Query: 20 EDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRR---------- 68
+DD G WE YA+ + + L EDE G + + A Y A +R+
Sbjct: 2 DDDEQKG--YTWEAGYAEGLNINDVLVEDEGGSIE--KSIAKYVADSKRKARLTKRPERI 57
Query: 69 ----LRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 124
+R +V +R + M PSR VV K ++ F+ FF+QNP++QIGL+T KD
Sbjct: 58 RLGIMRHVMIVIDCSRFMTSKAMP--PSRFVVVMKALQTFLDRFFEQNPIAQIGLITCKD 115
Query: 125 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 182
A+ LT + G+ ++L + + C GD SLQNAL L L +P + REV+++
Sbjct: 116 RKADRLTMMTGNIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPGHVSREVVLVI 175
Query: 183 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 242
SALST DPG+I TI+ K IRCS IGLSAEMF+CK + + T G YSVALD H + L
Sbjct: 176 SALSTIDPGNIYSTIETMKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDHLQLL 235
Query: 243 IMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK--VGVGYTCPRCKARVC 300
+H PP + A+ + N I +GFP + S C CH + K G+ C +C AR C
Sbjct: 236 FSKHTLPPSS-AKSSECNAIHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCGARHC 294
Query: 301 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 360
+P +C +C L LV++P LAR++ HL P++ F+++ +R C+ C+ L
Sbjct: 295 SIPAECPVCKLTLVAAPQLARAFRHLQPLSAFEQI---------EVTRGFCYACETRLSG 345
Query: 361 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
G + C C+ FCL+CD +HESLH CPGC
Sbjct: 346 EGFR------CGSCQLVFCLDCDTLLHESLHVCPGC 375
>gi|452824298|gb|EME31302.1| transcription initiation factor TFIIH subunit H2 isoform 2
[Galdieria sulphuraria]
Length = 334
Score = 247 bits (631), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 196/320 (61%), Gaps = 17/320 (5%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVAT 77
L +WE+ RSWE L+EDE+G ++ D S+F ++ +R+ ++ R LV
Sbjct: 12 LYSWEQDIV--RSWETLEEDETGKIK--DLSSFERSRVKRKRKNTQQNVRRGLIRFLVLI 67
Query: 78 TARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
++A E D +PSR V + F+ +F++NP+SQ+ +V ++DGVA L+ +G +P
Sbjct: 68 LDLSREAKETDVKPSRGEVCLSCAQKFLYSYFNENPISQLAVVVLRDGVAEKLSSMGSNP 127
Query: 138 ESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
H + + + G G+ SLQN LD+ LL IPSYG REVLILY+++S+CDPGDI +
Sbjct: 128 RQHSEVVKNANQKGFYGNCSLQNGLDVALSLLHSIPSYGSREVLILYNSISSCDPGDIRQ 187
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAE 255
TI+K ++ +IRC+VIG++AE++I K+L T GSY V ++ESH EL+ + P I
Sbjct: 188 TIEKLEKERIRCNVIGMAAELYILKYLAARTHGSYFVCMNESHLLELLEDFVVPSALIEN 247
Query: 256 FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 315
L++MGFP +C K ++ V + CPRC+ E+P +C +CGL LVS
Sbjct: 248 NTKTALVRMGFPTLKAYKEPKVCLNDKVLRNQV-FVCPRCECCYGEIPIECVLCGLILVS 306
Query: 316 SPHLARSYHHLFPIAPFDEV 335
S LARSYHHLFP+A F E+
Sbjct: 307 SSQLARSYHHLFPVANFHEL 326
>gi|320585884|gb|EFW98563.1| suppressor of stem-loop protein 1 [Grosmannia clavigera kw1407]
Length = 524
Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 156/424 (36%), Positives = 216/424 (50%), Gaps = 57/424 (13%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR-LRD---------RSLV 75
G AWE RSW+ + E E G + ++ A A+ RRR LRD R +V
Sbjct: 77 GQQAAWETV---KRSWDTVGEAEDGQVLGVEFLAA--AEKRRRVLRDTTPLQRGIIRHVV 131
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
+ D+ PS V FVR FF+QNP+SQ+ +V ++DGVA ++D+GG
Sbjct: 132 LVLDMSAAMSSRDYLPSCQRVALDCAADFVRAFFEQNPISQLAVVAMRDGVALRVSDMGG 191
Query: 136 SPESHIKALMGKLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
SP H+ L G G SLQNAL++ +G L P++G REVL+++ AL + DP DI
Sbjct: 192 SPAEHLDRLADWDGVEPQGQPSLQNALEMCRGALFHTPAHGTREVLVVFGALLSSDPADI 251
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 249
+TI +IR S++GL+A++ +C +C T +Y+VA + HF EL++ P
Sbjct: 252 HDTIAALVADRIRVSIVGLAAKVAVCAEICARTNPGDEAAYAVARHDVHFHELVLAATTP 311
Query: 250 PPA------IAEFAIANLIKMGFPQR------AGEGSISICSCHKEVKVGVGYTCPRCKA 297
P A A+L+ MGFP R AG G +S+C+CH V GY C RC A
Sbjct: 312 PATRPDDGDAASTGPASLLMMGFPSRAIADTVAGGGGLSVCACHSR-PVREGYGCTRCGA 370
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT-PLCLNDPRNRSRSTCFGCQQ 356
+VC LP +C CGL L+ S HLARSYHHLFP+ + EV+ + R R C C
Sbjct: 371 KVCRLPAECPACGLTLILSTHLARSYHHLFPLRSWVEVSWTAAADAVRRRRAVACHACLT 430
Query: 357 SL----------------------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCP 394
SG AC C HFC++CD++ HE +HNCP
Sbjct: 431 PFPAVDTAAAAAAAVTAAAAATQTTGSGVSESGRYACEVCGHHFCIDCDVFAHEVIHNCP 490
Query: 395 GCES 398
GC+S
Sbjct: 491 GCQS 494
>gi|255724012|ref|XP_002546935.1| suppressor of stem-loop protein 1 [Candida tropicalis MYA-3404]
gi|240134826|gb|EER34380.1| suppressor of stem-loop protein 1 [Candida tropicalis MYA-3404]
Length = 505
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 150/461 (32%), Positives = 233/461 (50%), Gaps = 103/461 (22%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNS------AFYHAQYRRRLRD----------RS 73
AWE Y RSW+ +++DESG NS + + ++ +++ R+
Sbjct: 57 AWEDEY--QRSWDIVKDDESG-----SNSFEAMVQSIIENRKKKIMKNPSTPFQRGIIRT 109
Query: 74 LVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
LV +E D RP+R+++ ++ FV EFFDQNP+S++G++ +++G+AN ++++
Sbjct: 110 LVIIIDGSSVMSEKDLRPNRLSMTLSYLQDFVTEFFDQNPISRLGIILMRNGIANLVSEV 169
Query: 134 GGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLI 180
GSP+ HI + + GD SLQN+L++ + LL + + +EVLI
Sbjct: 170 SGSPQYHIDKIRQLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNTKNSKEVLI 229
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--------YSV 232
++ AL T DPGDI TI + +I+ SVIGLSA++ IC+ L T Y V
Sbjct: 230 IFGALFTSDPGDIHRTIDNLIKDEIKVSVIGLSAQVAICQELVNRTNKEPRNSQSKHYGV 289
Query: 233 ALDESHFKELIMEHAPPPP----------AIAEFAIANLIKMGFPQRAGEGSISICS--- 279
++ESHFKEL+M+ P P A +E +++MGFP + S+ +
Sbjct: 290 IMNESHFKELLMDSVTPLPLTESEKRLQDAQSEDGGVPVLRMGFPSKVQPTLTSVVTGTD 349
Query: 280 ---------------------------CHKEVKVG----VGYTCPRCKARVCELPTDCRI 308
++ V +GY CP+CK++VC LPT C +
Sbjct: 350 MIIEFPHLNASFPTQGSEDSKDAVEIQNNRAVAAASSSVIGYQCPQCKSKVCNLPTLCPV 409
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL---LSSGNKP 365
CGL L+ S HLARSYHHL P+A F EV + D CFGCQ + +G +
Sbjct: 410 CGLMLILSTHLARSYHHLVPLAQFKEVPVAPVYDSE-----FCFGCQLKFPDGVKAGTQK 464
Query: 366 GLYVA-------CPKCKKHFCLECDIYIHESLHNCPGCESL 399
G + C +C+K FC+ CD+++HE LH CPGCE++
Sbjct: 465 GSLESMTSSRYRCKRCEKSFCINCDVFVHEVLHTCPGCENM 505
>gi|239614970|gb|EEQ91957.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
ER-3]
gi|327356553|gb|EGE85410.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
ATCC 18188]
Length = 525
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 153/432 (35%), Positives = 223/432 (51%), Gaps = 68/432 (15%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
GG E WE S R+WE+L E G + + +R LRD R L+
Sbjct: 74 GGAE-WEVS----RTWESLVESADGTISATVEGLLEAGKRKRLLRDTTPLQRGIIRHLIL 128
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
AE D RP+R + + + FV EFF+QNP+SQ+G++ ++DG+A ++D+ G+
Sbjct: 129 VLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRDGLAVRISDMSGN 188
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P HI A+ + G SLQN L++ +G L + P++G REV I++ AL + DPGDI
Sbjct: 189 PTDHILAIQSLRPKDPKGMPSLQNTLEMARGALFRTPTHGTREVFIIFGALLSSDPGDIH 248
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIME----- 245
+TI KIR S+IGL+A++ IC+ +C T Y VAL+E HF+EL M
Sbjct: 249 KTINTLVADKIRVSIIGLAAQVAICRDICARTNNGDDSGYGVALNEQHFRELFMNVTTPP 308
Query: 246 ---------HAPPPPAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPR 294
++ ++L+ MGFP R + + ++C+CH + GY C R
Sbjct: 309 ATTVAPTPTTTKEETKTSQTTTSSLLMMGFPSRTLSPTTTPTLCACHSKPSR-TGYLCSR 367
Query: 295 CKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC 354
C A+VC LPT C CGL L+ S HLARSYHHLFP+ + EV+ R RS ++CF C
Sbjct: 368 CGAKVCTLPTSCPCCGLTLILSTHLARSYHHLFPLMNWVEVS--WRRAARKRS-ASCFAC 424
Query: 355 QQSL------------------------LSSGNKPGLYVA----CPKCKKHFCLECDIYI 386
+ G+ V+ CP C+ HFC++CD++
Sbjct: 425 AVGFPRVPKQFSGGEQEGAGEEQGEGEGETVKGPSGISVSGRYECPVCECHFCIDCDVFA 484
Query: 387 HESLHNCPGCES 398
HE +HNCPGC+S
Sbjct: 485 HEVVHNCPGCQS 496
>gi|448096877|ref|XP_004198537.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
gi|359379959|emb|CCE82200.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
Length = 514
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/456 (33%), Positives = 239/456 (52%), Gaps = 90/456 (19%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGF--LRPIDNSAFYHAQYRRRLRD------RSLVA 76
N G +WE Y R+W+ +++D+ G L+ + + ++ ++ +++ R ++
Sbjct: 66 NSGGYSWEDEYQ--RTWDIVKDDDDGVGSLQTLVQT-LIESRKKKIMKNPSTPFQRGIIR 122
Query: 77 TTARIQKAAEM----DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 132
T I +E+ D RP+R +++ ++ F+ EFFDQNP+SQ+G+V +++G+A ++D
Sbjct: 123 TMIVIIDGSEVMLERDLRPTRFSMMLSLLQEFILEFFDQNPISQMGIVMMRNGIAIRISD 182
Query: 133 LGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVL 179
+ GSP+ HI + + GD SLQN+L+L + LL + +E+L
Sbjct: 183 VSGSPQYHIDKIRQLKTKQHNRFEPKGDPSLQNSLELARSLLMYNFNNKVNDTQNSKEIL 242
Query: 180 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS---------- 229
I++ AL T DPG+I +TI + I+ +IGL+A++ IC+ + + T S
Sbjct: 243 IIFGALFTSDPGNIHKTIDNLVKDDIKIKIIGLAAQVAICEEIVRRTNSSKTSSSYINTN 302
Query: 230 YSVALDESHFKELIMEHAPPPPAIAEFAIAN-----LIKMGFPQR-----AGEGSI---- 275
Y V ++ESHFKEL+M+ P P +F LIKMGFP + SI
Sbjct: 303 YGVIMNESHFKELLMDCVIPLPVSEDFEKKEKKGVPLIKMGFPSKIQPSVTSNSSINLNL 362
Query: 276 -SICSCH----------KEV----------KVGVGYTCPRCKARVCELPTDCRICGLQLV 314
SICSCH KE K +GY CP+C +VC+LPT C ICGL L+
Sbjct: 363 PSICSCHPDEENDASHSKEAGEAGNGTYSSKKVIGYKCPQCLNKVCQLPTICPICGLMLI 422
Query: 315 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC--------QQSLLSSGNKPG 366
S HLARSYHHL P+ + EV + + C+GC + + NK
Sbjct: 423 LSTHLARSYHHLVPLEAYKEVPTM-----EEYESTYCYGCLLKFPSGRKNAQSDDANKIE 477
Query: 367 LYVA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C KC++ FC++CD++IHE+LHNCPGCE+
Sbjct: 478 SLTSSRYRCGKCQQDFCIDCDVFIHETLHNCPGCEN 513
>gi|146414033|ref|XP_001482987.1| hypothetical protein PGUG_04942 [Meyerozyma guilliermondii ATCC
6260]
Length = 488
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/448 (33%), Positives = 236/448 (52%), Gaps = 85/448 (18%)
Query: 27 GLEAWERSYADDRSWEALQ-EDESGFLRPIDNSAFYHAQYRRR--LRD----------RS 73
G +WE Y R W+ ++ EDE+G + ++N + R++ +++ R+
Sbjct: 46 GGYSWEDRYK--RPWDIVKDEDEAG--QSLENVIQTMIENRKKKIMKNPTTPFQRGIIRT 101
Query: 74 LVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
L+ E D RP+R A+ + ++ F+ EFFDQNP+SQ+G+V +++GV+N ++++
Sbjct: 102 LIVIIDGSLTMLEKDLRPNRFAMTLQLLQEFIVEFFDQNPISQLGIVMMRNGVSNLVSEV 161
Query: 134 GGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLI 180
G P+ HI L + GD LQN+L++ + +L + + +EVLI
Sbjct: 162 NGLPQYHIDKLRLLRSRQHNRFEPKGDPLLQNSLEMARAMLKYNFGTNMDDNKNSKEVLI 221
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDT-------------- 226
L+ AL T DPGDI +TI + +I+ +IGLSA++ IC+ + T
Sbjct: 222 LFGALFTSDPGDIHKTIDNLIKDEIKVKIIGLSAQVSICQQIANKTNNLGSRTTGANSSS 281
Query: 227 GGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN----LIKMGFPQR------AGEGSIS 276
G +YSV ++E+H++EL+M+ P P A + LIKMGFP + A +++
Sbjct: 282 GSNYSVIMNETHYRELLMDCVVPLPVAATEKRSTVGVPLIKMGFPLKVLPPISASNNTVN 341
Query: 277 I-----CSCH---------KEVKVG-------VGYTCPRCKARVCELPTDCRICGLQLVS 315
+ C+CH V +G +GY CP+C++RVC LPT C CGL L+
Sbjct: 342 LDLPVLCACHPTNGSLESKDAVTIGAESSTSIIGYQCPQCRSRVCHLPTICPTCGLMLIL 401
Query: 316 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVA----- 370
S HLARSYHHL P+ + EV + + C+GC +G G A
Sbjct: 402 STHLARSYHHLVPLREYKEVPA-----ADHYEGTHCYGCLLKFPEAGGPDGPLRASSRYR 456
Query: 371 CPKCKKHFCLECDIYIHESLHNCPGCES 398
CP C + FC++CD+++HE+LHNCPGCES
Sbjct: 457 CPTCARDFCIDCDVFVHETLHNCPGCES 484
>gi|310796716|gb|EFQ32177.1| hypothetical protein GLRG_07321 [Glomerella graminicola M1.001]
Length = 482
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 156/418 (37%), Positives = 220/418 (52%), Gaps = 57/418 (13%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSLVATTARIQKAAEMD 88
RSWE + E G L A A+ RRRL RD R LV AE D
Sbjct: 48 RSWEEVTEGADGSLAV---GASLEAEKRRRLLRDTTPLQRGIIRHLVLVLDMSFAMAEKD 104
Query: 89 FRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL 148
P+R V FV+E+F+QNP+SQ+G++ ++DGVA ++D+ G+P H++ L
Sbjct: 105 MLPNRYRVAWAYAADFVKEYFEQNPISQLGIIGMRDGVAIRISDMSGNPTDHLEKLKTFE 164
Query: 149 GC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIR 206
G SG+ SLQNAL++ +G L PS+G REVLI++ AL + DPGDI +TI +IR
Sbjct: 165 GQDPSGNPSLQNALEMCRGALFHAPSHGTREVLIVFGALLSSDPGDIHDTISSLITDRIR 224
Query: 207 CSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAEF-AIANL 261
S++GL+A++ IC LC T YSV ++++HF++L++ PP + A+L
Sbjct: 225 VSIVGLAAQVAICAELCSRTNAGDETQYSVCMNDAHFRDLLLATTTPPVTRTVAQSTASL 284
Query: 262 IKMGFPQRA---GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPH 318
+ MGFP R GE + ++C+CH + GY C RC RVC LP +C C L L+ S H
Sbjct: 285 LMMGFPSRTLAQGEAT-AVCACHNK-PAREGYLCTRCGTRVCRLPIECPACSLTLILSTH 342
Query: 319 LARSYHHLFPIAPFDEVTPL----------CLND----PRNRSRSTCFG----------- 353
LARSYHHLFP+ + EV+ CL P+ R
Sbjct: 343 LARSYHHLFPLRNWIEVSWAEAAKSKACYSCLTTFPEPPKTGRRKDKDKDKEKDGLHTTA 402
Query: 354 ------CQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPI 405
S L ++ G Y +C C HFC++CD+Y HE +HNCPGC+S P+
Sbjct: 403 PVAPTPVTASDLKGVSESGRY-SCTVCGNHFCIDCDVYAHEVIHNCPGCQSDTRGAPM 459
>gi|443923297|gb|ELU42560.1| RNA polymerase II transcription factor [Rhizoctonia solani AG-1 IA]
Length = 877
Score = 244 bits (622), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 197/355 (55%), Gaps = 36/355 (10%)
Query: 30 AWERSYADDRSWEALQEDESGFL---------RPIDNSAFYHAQYRRRLRDRSLVATTAR 80
+WE +Y RSW+ +QEDE G L R + RR R LV
Sbjct: 111 SWEANYV--RSWDQVQEDEGGNLAHSVEDLIARKRRQRLLGPSSAIRRAIIRHLVLLIDL 168
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
A+ D RP+R + AFV E+ +QNPL QIG+V ++ G+ + ++ G+P
Sbjct: 169 SAAMADRDLRPTRFELALDCARAFVVEWCEQNPLGQIGVVGMRAGIGERIVEMTGNPHDV 228
Query: 141 IKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
++A+ K L +G+ SLQNA+++ + + + E++I++ +L+TCDPGDI ET+
Sbjct: 229 LRAIADKRKLEPAGEPSLQNAIEVARAGMRHV-RLTREEIVIIFGSLTTCDPGDIYETLD 287
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA- 257
C + KIR S++ L+AEM ICK LC+ T GS+ VAL+E HFK+L+ EH PPP A
Sbjct: 288 SCVKDKIRISLVALAAEMKICKELCEKTEGSFGVALNEGHFKDLLFEHIPPPAHRAARTG 347
Query: 258 -----------------IANLIKMGFPQRAGEGSI-SICSCHKEVKVGVGYTCPRCKARV 299
A+L+ MGFP R S ++C CH G+ CPRC A++
Sbjct: 348 NDKIPSSQTGKANPLNPNADLMLMGFPTRLPPTSAPALCVCHPSRMRAEGFLCPRCSAKL 407
Query: 300 CELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC 354
CE+PTDC +CGL +VSSPHLARSYHHLFP+ + + + P + +TC GC
Sbjct: 408 CEVPTDCDVCGLMVVSSPHLARSYHHLFPVGAYTAINEI---GPDDTPSATCQGC 459
>gi|448110898|ref|XP_004201714.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
gi|359464703|emb|CCE88408.1| Piso0_001913 [Millerozyma farinosa CBS 7064]
Length = 514
Score = 244 bits (622), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 154/462 (33%), Positives = 239/462 (51%), Gaps = 102/462 (22%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGF--LRPIDNSAFYHAQYRRRLRD------RSLVA 76
N G +WE Y R+W+ +++D+ G L+ + + ++ ++ +++ R ++
Sbjct: 66 NSGGYSWEDEYQ--RTWDIVKDDDDGVGSLQTLVQT-LIESRKKKIMKNPSTPFQRGIIR 122
Query: 77 TTARIQKAAEM----DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTD 132
T I +E+ D RP+R +++ ++ F+ EFFDQNP+SQ+G+V +++G+A ++D
Sbjct: 123 TMIVIIDGSEVMLERDLRPTRFSMMLSLLQEFILEFFDQNPISQMGIVMMRNGIAVRISD 182
Query: 133 LGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVL 179
+ GSP+ HI + + GD SLQN+L+L + LL + +E+L
Sbjct: 183 VSGSPQYHIDKIRQLKTKQHNRFEPKGDPSLQNSLELARSLLMYNFNNKVNDTQNSKEIL 242
Query: 180 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS---------- 229
I++ AL T DPG+I +TI + I+ +IGL+A++ IC+ + + T S
Sbjct: 243 IIFGALFTSDPGNIHKTIDNLVKDDIKVKIIGLAAQVAICEEIVRRTNSSKTSSSYINTN 302
Query: 230 YSVALDESHFKELIMEHAPPPPAIAEFAIAN-----LIKMGFPQR-----AGEGSI---- 275
Y V ++ESHFKEL+M+ P P +F LIKMGFP + SI
Sbjct: 303 YGVIMNESHFKELLMDCVIPLPVSEDFEKKEKKGVPLIKMGFPSKIQPSITSNSSINLNL 362
Query: 276 -SICSCH----------KEV----------KVGVGYTCPRCKARVCELPTDCRICGLQLV 314
SICSCH KE K +GY CP+C +VC+LPT C ICGL L+
Sbjct: 363 PSICSCHPDEENESSHSKEAGEAGNGTYSSKKVIGYKCPQCLNKVCQLPTICPICGLMLI 422
Query: 315 SSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ------------------Q 356
S HLARSYHHL P+ + EV + C+GC +
Sbjct: 423 LSTHLARSYHHLVPLEAYREVPTM-----EEYESIYCYGCLLKFPPGRKNAESDETNKIE 477
Query: 357 SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
SL SS + C KC++ FC++CD++IHE+LHNCPGCE+
Sbjct: 478 SLTSSRYR------CGKCQQDFCIDCDVFIHETLHNCPGCEN 513
>gi|241950787|ref|XP_002418116.1| TFIIH subunit, putative; general transcription and DNA repair
factor IIH subunit, putative; suppressor of stem-loop
protein 1, putative [Candida dubliniensis CD36]
gi|223641455|emb|CAX43416.1| TFIIH subunit, putative [Candida dubliniensis CD36]
Length = 501
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/457 (33%), Positives = 223/457 (48%), Gaps = 101/457 (22%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT-TARIQKA---- 84
AWE Y RSW+ +++DE G NS Q R + ++ + Q+
Sbjct: 57 AWEDEY--QRSWDIVKDDEQG-----GNSFEAMVQSIIENRKKKIMKNPSTPFQRGIIRT 109
Query: 85 -----------AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
+E D RPSR+++ ++ FV EFFDQNP+S++G++ +++GVAN ++++
Sbjct: 110 LIIIIDGSSAMSEKDLRPSRLSMTLNYLQEFVVEFFDQNPISRLGIILMRNGVANLVSEV 169
Query: 134 GGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLI 180
GSP+ H+ + + GD SLQN+L++ + LL + S +E+L+
Sbjct: 170 SGSPQYHVDKIRNLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEILV 229
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--------YSV 232
++ AL T DPGDI +TI + +I+ SVIGLSA++ IC+ L T Y V
Sbjct: 230 IFGALFTSDPGDIHKTIDSLVKDEIKTSVIGLSAQVAICQELVNRTNKEPRNSQSKHYGV 289
Query: 233 ALDESHFKELIMEHAPPPPAI--------AEFAIANLIKMGFPQR--------------- 269
++ESHFKEL+ME P P +E +++MGFP +
Sbjct: 290 IMNESHFKELLMESVTPLPLTESEKQIQESEQNGVPVLRMGFPTKVQPTLTSAIGGSDYI 349
Query: 270 -------------AGEGSISICSCHKEVKVG----VGYTCPRCKARVCELPTDCRICGLQ 312
E S + +GY CP+CK +VC LPT C +CGL
Sbjct: 350 IEFPHLNASFPTQGSEDSKDVVEIQTNKPAAASSLIGYQCPQCKCKVCNLPTICPVCGLM 409
Query: 313 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY---- 368
L+ S HLARSYHHL P+AP+ EV + D + CFGCQ G K G
Sbjct: 410 LILSTHLARSYHHLVPLAPYKEVKVSPIYD-----STYCFGCQLK-FPEGVKLGTLKKSL 463
Query: 369 -------VACPKCKKHFCLECDIYIHESLHNCPGCES 398
C KC + FC+ CD+++HE LHNCPGCE+
Sbjct: 464 ESMTSSRYRCLKCSQDFCINCDVFVHEVLHNCPGCEN 500
>gi|238881955|gb|EEQ45593.1| suppressor of stem-loop protein 1 [Candida albicans WO-1]
Length = 472
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 228/462 (49%), Gaps = 106/462 (22%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT-TARIQKA---- 84
AWE Y RSW+ +++DE G NS Q R + ++ + Q+
Sbjct: 23 AWEDEY--QRSWDIVKDDEQG-----GNSFEAMVQSIIENRKKKIMKNPSTPFQRGIIRT 75
Query: 85 -----------AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
+E D RP+R+++ ++ FV EFFDQNP+S++G++ +++GVAN ++++
Sbjct: 76 LIIIIDGSSAMSEKDLRPTRLSMTLNYLQEFVVEFFDQNPISRLGIILMRNGVANLVSEV 135
Query: 134 GGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLI 180
GSP+ H+ + + GD SLQN+L++ + LL + S +E+L+
Sbjct: 136 SGSPQYHVDKIRNLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEILV 195
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--------YSV 232
++ AL T DPGDI +TI + +I+ SVIGLSA++ IC+ L T Y V
Sbjct: 196 IFGALFTSDPGDIHKTIDNLVKDEIKASVIGLSAQVAICQELVNRTNNEPRNSQSKHYGV 255
Query: 233 ALDESHFKELIMEHAPPPPAI--------AEFAIANLIKMGFPQRA-------------- 270
++ESHFKEL+ME P P +E +++MGFP +
Sbjct: 256 IMNESHFKELLMESVTPLPLTESEKQMQESEQNGVPVLRMGFPTKVQPTLTSAIGGSDYI 315
Query: 271 -----------GEGS------ISICSCHKEVKVG------VGYTCPRCKARVCELPTDCR 307
+GS + I + V +GY CP+CK +VC LPT C
Sbjct: 316 VEFPHLNASFPTQGSEDSKDVVEIQTNKPAAAVATTSSSVIGYQCPQCKCKVCNLPTICP 375
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
+CGL L+ S HLARSYHHL P+AP+ EV + D + CFGCQ G K G
Sbjct: 376 VCGLMLILSTHLARSYHHLVPLAPYKEVKVSPIYD-----STYCFGCQLK-FPEGVKLGT 429
Query: 368 YVA-----------CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C KC + FC+ CD+++HE LHNCPGCE+
Sbjct: 430 HKGTLESMTSSRYRCLKCSQDFCINCDVFVHEVLHNCPGCEN 471
>gi|68466623|ref|XP_722507.1| hypothetical protein CaO19.1457 [Candida albicans SC5314]
gi|68466906|ref|XP_722368.1| hypothetical protein CaO19.9032 [Candida albicans SC5314]
gi|46444338|gb|EAL03613.1| hypothetical protein CaO19.9032 [Candida albicans SC5314]
gi|46444486|gb|EAL03760.1| hypothetical protein CaO19.1457 [Candida albicans SC5314]
Length = 507
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 152/462 (32%), Positives = 228/462 (49%), Gaps = 106/462 (22%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT-TARIQKA---- 84
AWE Y RSW+ +++DE G NS Q R + ++ + Q+
Sbjct: 58 AWEDEY--QRSWDIVKDDEQG-----GNSFEAMVQSIIENRKKKIMKNPSTPFQRGIIRT 110
Query: 85 -----------AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
+E D RP+R+++ ++ FV EFFDQNP+S++G++ +++GVAN ++++
Sbjct: 111 LIIIIDGSSAMSEKDLRPTRLSMTLNYLQEFVVEFFDQNPISRLGIILMRNGVANLVSEV 170
Query: 134 GGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------SQIPSYGHREVLI 180
GSP+ H+ + + GD SLQN+L++ + LL + S +E+L+
Sbjct: 171 SGSPQYHVDKIRNLKARQHNRFEPKGDPSLQNSLEMARSLLKFNFGSTSNNSKNSKEILV 230
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--------YSV 232
++ AL T DPGDI +TI + +I+ SVIGLSA++ IC+ L T Y V
Sbjct: 231 IFGALFTSDPGDIHKTIDSLVKDEIKASVIGLSAQVAICQELVNRTNNEPRNSQSKHYGV 290
Query: 233 ALDESHFKELIMEHAPPPPAI--------AEFAIANLIKMGFPQRA-------------- 270
++ESHFKEL+ME P P +E +++MGFP +
Sbjct: 291 IMNESHFKELLMESVTPLPLTESEKQIQESEQNGVPVLRMGFPTKVQPTLTSAIGGSDYI 350
Query: 271 -----------GEGS------ISICSCHKEVKVG------VGYTCPRCKARVCELPTDCR 307
+GS + I + V +GY CP+CK +VC LPT C
Sbjct: 351 VEFPHLNASFPTQGSEDSKDVVEIQTNKPAAAVATTSSSVIGYQCPQCKCKVCNLPTICP 410
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
+CGL L+ S HLARSYHHL P+AP+ EV + D + CFGCQ G K G
Sbjct: 411 VCGLMLILSTHLARSYHHLVPLAPYKEVKVSPIYD-----STYCFGCQLK-FPEGVKLGT 464
Query: 368 YVA-----------CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C KC + FC+ CD+++HE LHNCPGCE+
Sbjct: 465 HKGTLESMTSSRYRCLKCSQDFCINCDVFVHEVLHNCPGCEN 506
>gi|219116518|ref|XP_002179054.1| suppressor of stem-loop protein 1 [Phaeodactylum tricornutum CCAP
1055/1]
gi|217409821|gb|EEC49752.1| suppressor of stem-loop protein 1 [Phaeodactylum tricornutum CCAP
1055/1]
Length = 413
Score = 240 bits (613), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 139/400 (34%), Positives = 219/400 (54%), Gaps = 44/400 (11%)
Query: 29 EAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR---------LRDRSLV---- 75
AWE + + + +A++ED +G + A +RR R+R +V
Sbjct: 23 HAWEDNRSQNAWDQAVREDATGRIVVASGDTLAQAIRKRRKRLTQNDYAQRNRRVVRDMI 82
Query: 76 ------ATTARIQKAAEMDFRP-SRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 128
+R + + P +R+ V ++ FV+E++DQNPLSQ+G V +K+G A
Sbjct: 83 RYVYVLIDVSRWMRVKDPVLPPGTRIDVTVAHLQHFVQEYYDQNPLSQLGFVLLKNGEAE 142
Query: 129 CLTDLGGSPESHIKAL--MGKLGCS------GDSSLQNALDLVQGLLSQIPSYGHREVLI 180
LT L S ++H AL + ++ + G+ SLQN L+L L PS+G RE+++
Sbjct: 143 ILTQLSSSSKTHKLALDSVAQMAAAEGPSGGGEFSLQNGLELAGRSLGHQPSHGSREIVL 202
Query: 181 LYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHF 239
+ +ALSTCDPG ++ ET+ + ++++IR S + L+AE+ +C+ L +T G V LD +H
Sbjct: 203 VTAALSTCDPGYLLTETLPRLRQAQIRVSCLALNAELHVCRKLADETHGVLGVCLDRAHL 262
Query: 240 KELIMEHAPPPPAIAEFAIA-NLIKMGFPQRA-GEGSISICSCHKEVKVG-VGYTCPRCK 296
++ + PPP + L++MGFP R +G + + ++ + YTCP C+
Sbjct: 263 RDWLRSQTVPPPTLPSRPHGCALVRMGFPTRIIADGPEFVHATRQQTVLARTAYTCPVCQ 322
Query: 297 ARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQ 356
A+ LP DC +CGLQLV +PHLARS+HHLFP+ PF EV P + Q
Sbjct: 323 AKNAALPADCAVCGLQLVLAPHLARSFHHLFPVPPFREVQP---------DTAVVSNSQV 373
Query: 357 SLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+++S L ACP C + FC++CD ++HESLHNCPGC
Sbjct: 374 PVVASRQ---LRFACPDCHQVFCVDCDAFLHESLHNCPGC 410
>gi|367035208|ref|XP_003666886.1| hypothetical protein MYCTH_2311995 [Myceliophthora thermophila ATCC
42464]
gi|347014159|gb|AEO61641.1| hypothetical protein MYCTH_2311995 [Myceliophthora thermophila ATCC
42464]
Length = 589
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 151/394 (38%), Positives = 208/394 (52%), Gaps = 56/394 (14%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
T S+ R NG++ + + AWE RSWE + E E G I A
Sbjct: 32 TRSKGGRANGKSGDGRKGARSK-----AAWEDI---KRSWENVVETEDG---SITIEALI 80
Query: 62 HAQYRRRL-RD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQ 111
A+ RRRL RD R L+ AE D P+R + FVRE+F+Q
Sbjct: 81 EAEKRRRLMRDTTPFQRGIIRHLMLVLDMSFAMAEKDLLPNRYLLTLNYAVDFVREYFEQ 140
Query: 112 NPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG---KLGCSGDSSLQNALDLVQGLLS 168
NP+SQ+G+V ++DG+A ++D+GG+P HI+ L + G+ SLQNAL++ +G L
Sbjct: 141 NPISQLGIVGMRDGIAVRISDMGGNPAEHIEKLRTWAEQQEPQGNPSLQNALEMCRGALF 200
Query: 169 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG 228
PS+G REVLI+Y AL + DPGDI +TI K +IR SV+GL+A++ IC+ LC T G
Sbjct: 201 HTPSHGTREVLIIYGALLSSDPGDIHDTIAKLLNDRIRVSVVGLAAQVAICEQLCTRTNG 260
Query: 229 ----SYSVALDESHFKEL--------IMEHAPPPPAIAE--------------FAIANLI 262
SY+VAL E HF+EL + + PPPP + A+L+
Sbjct: 261 GDPSSYAVALHEQHFRELFLAATTPPVTQSTPPPPGAGDGTNNNNNSQQQSQQSQQASLL 320
Query: 263 KMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLA 320
MGFP R A + +S+C+CH GY C RC+ +VC LP +C +CGL LV S HLA
Sbjct: 321 IMGFPSRALASKDHVSLCACHNR-PTREGYACTRCRTKVCRLPAECPVCGLTLVLSTHLA 379
Query: 321 RSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC 354
RSYHHLFP+ + V+ + CF C
Sbjct: 380 RSYHHLFPLRGWVAVS---WAEAARAKSGVCFAC 410
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 370 ACPKCKKHFCLECDIYIHESLHNCPGCES 398
ACP C HFC++CD++ HE +HNCPGC+S
Sbjct: 486 ACPVCGNHFCIDCDVFAHEMIHNCPGCQS 514
>gi|428671746|gb|EKX72661.1| conserved hypothetical protein [Babesia equi]
Length = 409
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 139/395 (35%), Positives = 209/395 (52%), Gaps = 39/395 (9%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL-----RDRS 73
DE D AWE+ DRSWE L D+ G L+ ++ + +L RD+
Sbjct: 27 DERDEETYAQYAWEKDV--DRSWEQLV-DKDGVLQFVEPQSRCLTTNESQLGSTVLRDKG 83
Query: 74 LVATTARIQ----------KAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVK 123
L+ I+ + EMDF+P R+ V+ FV+E F Q P++QIGL+ ++
Sbjct: 84 LIRKRGIIRNLVIIFDMSDRMHEMDFKPDRLYCAFGAVKEFVKELFHQGPITQIGLIGLR 143
Query: 124 DGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 181
+ V+ ++ LG +P+ I+ L L G SG +SLQN L++ +LS +PSY REVLI+
Sbjct: 144 NKVSTMISQLGTNPDEQIELLGNALKEGPSGTASLQNGLEMALTILSTLPSYTTREVLII 203
Query: 182 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 241
+ + T DPG+I+ T+ K KE+ I + I L+ E++I K++C +TGG SVA+D +H +
Sbjct: 204 FGSNRTLDPGNILATLYKLKENHICVNAISLAPELYILKNICTETGGMCSVAMDAAHLRT 263
Query: 242 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCE 301
L+ + PPP + L K+ FP + S+C+CH + Y CP+C ++ C
Sbjct: 264 LLNDFTIPPPW-HNWMEPVLTKVAFPPLKKTTTASLCACHSNL-THTAYICPQCHSKSCS 321
Query: 302 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSS 361
+PT CR CG+ LVS P ++R+++HL P F + D R TC S+
Sbjct: 322 IPTRCRCCGIYLVSPPDISRAFYHLIPPKTF-------IKDSRTGRCDTC----NYETSN 370
Query: 362 GNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
G+ CP C FC CD YIH LH CP C
Sbjct: 371 GS------TCPDCASFFCEYCDAYIHNELHQCPHC 399
>gi|406697522|gb|EKD00781.1| component of RNA polymerase transcription factor TFIIH, Ssl1p
[Trichosporon asahii var. asahii CBS 8904]
Length = 436
Score = 237 bits (604), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/381 (34%), Positives = 211/381 (55%), Gaps = 38/381 (9%)
Query: 11 GEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLR 70
G +++ + +D + AWE +Y RSW+ ++EDE+G L+ + RR R
Sbjct: 27 GPSKKSRKGKDKANGKSVNAWEETY--KRSWDVVREDETGGLQAAVDQLIARG---RRKR 81
Query: 71 DRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCL 130
+ + + A +++ + + + +FV E+FDQNPL QIG++ +++ +A L
Sbjct: 82 AVATITSAAHVRRRRPLGLDERQGLPSHPYLRSFVIEWFDQNPLGQIGIILLRNRLAQTL 141
Query: 131 TDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC 188
+ G+P+ I+AL K L +G+ SLQN L + +G +S +PS EVL+L+SA+ST
Sbjct: 142 VPMCGNPQEIIEALADKRKLEPAGEPSLQNGLVMARGGMSHLPSTSSLEVLVLFSAISTA 201
Query: 189 DPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIME 245
DP +I + + + +++R ++I LSAE+ ICK + + TGG + VA+DE H+KEL+ E
Sbjct: 202 DPDGSMNIHQVLDELVSARVRVTIISLSAEIKICKQIAERTGGRFGVAIDEDHYKELLWE 261
Query: 246 HAPPP------PAIAEF-------------------AIANLIKMGFPQRAGEGSISICSC 280
PPP P A + +L+ MGFP R S C+C
Sbjct: 262 TIPPPAQTITAPVTANVREALARGGRQAPGAPKRPPPLGDLLVMGFPTRLPGAGESFCAC 321
Query: 281 HKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCL 340
H +K G GY CPRC A++C++PTDC +CGL +VSSPHLARS+ LFP++ +D + L
Sbjct: 322 HGLLKRG-GYMCPRCGAKLCDVPTDCEVCGLMVVSSPHLARSFWLLFPVSKYDTLGRGVL 380
Query: 341 NDPRNRSRSTCFGCQQSLLSS 361
+ R+ CFGC +S
Sbjct: 381 T--KEAVRAECFGCDAPFPTS 399
>gi|358340016|dbj|GAA47968.1| transcription initiation factor TFIIH subunit 2 [Clonorchis
sinensis]
Length = 929
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/364 (38%), Positives = 199/364 (54%), Gaps = 42/364 (11%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFY--HAQYRRRLRDRSLVATTAR-------- 80
WE Y +++W A++ED++G L + H+Q R++ R R+ V T
Sbjct: 535 WESGY--EKTWNAIREDDAGRLVTTLEQLVHDAHSQLRKK-RHRAAVGTEGFVRLGMMRH 591
Query: 81 ----IQKAAEM---DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
I ++ M D +P+R+ + V FVR++FDQNP+SQ+G++ D A LT+L
Sbjct: 592 LFLIIDMSSAMQVQDLKPTRLVCTLRAVAEFVRDYFDQNPISQLGIIVTADRQAERLTEL 651
Query: 134 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 191
G+P H+ AL + CSG+ SLQNAL L + L P H E+L++ ++L+TCDPG
Sbjct: 652 SGNPRCHLAALETLFTRPCSGEPSLQNALTLAESRLKYTPH--HSEILVIMASLTTCDPG 709
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 251
DI +TIQ + IRCSV+ L+ E+F+ + L Q T G + V LDE H K ++ PPP
Sbjct: 710 DIHKTIQSLAANHIRCSVVSLAVEVFVYRALAQITQGQFHVILDEPHLKTVLKNFVPPPA 769
Query: 252 AIAEFAIANLIKMGFPQRAG----EGSISICSCHKEVKVGVG------YTCPRCKARVCE 301
A + A A LI+M FP S +C CH + Y CPRC A CE
Sbjct: 770 ATVD-APATLIRMAFPHSETFDLRNFSTVLCMCHLNQQGSSTDSSHPQYACPRCCAAYCE 828
Query: 302 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCL--NDPRNRSRS-----TCFGC 354
LP +C +CGL LV++PHLAR+YHHLFP+ F ++P L +P R+ TC GC
Sbjct: 829 LPVECTVCGLTLVAAPHLARAYHHLFPLDAFTPISPAELRQTNPDQLPRTETGIITCAGC 888
Query: 355 QQSL 358
L
Sbjct: 889 DVVL 892
>gi|171689514|ref|XP_001909697.1| hypothetical protein [Podospora anserina S mat+]
gi|170944719|emb|CAP70830.1| unnamed protein product [Podospora anserina S mat+]
Length = 501
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 158/444 (35%), Positives = 217/444 (48%), Gaps = 91/444 (20%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSLVATTA 79
AWE + R+W+ + E G I + A+ RRRL RD R +V
Sbjct: 46 AWEEVH---RAWDEVAIAEDG---SITVAELIEAEKRRRLMRDTTPIQRGIIRHMVLVLD 99
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
AE D P+R A+ FV FF QNP+SQ+G++ ++DG+A ++D+ G+P
Sbjct: 100 MSIAMAEKDLLPNRFALTFSYAMEFVNTFFQQNPISQLGIIGMRDGIAVRISDMSGNPVE 159
Query: 140 HIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
HI+ L G+ SLQNAL++ +G L PS+G REVLI+Y AL + DPGDI +TI
Sbjct: 160 HIEKLRQWALKDPIGNPSLQNALEMCRGHLYHTPSHGTREVLIIYGALLSSDPGDISDTI 219
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPPPPAI 253
+IR S+IGL+A++ IC LC T Y +AL E HF+EL + PP
Sbjct: 220 TSLIADRIRVSIIGLAAQVAICAELCARTNDNDDSQYRIALHEQHFRELFLAATTPPVTH 279
Query: 254 -AEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICG 310
AE + A+L+ MGFP R A + +S+C+CH + GYTC RC+ +VC LP C +CG
Sbjct: 280 EAEQSNASLLMMGFPSRSLASKDFVSLCACHNK-PTREGYTCTRCRIKVCRLPASCPVCG 338
Query: 311 LQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGCQQSLL--------- 359
L L+ S HLARSYHHLFP+ + V P ++ + CF CQ
Sbjct: 339 LTLILSIHLARSYHHLFPLKSWVAV-------PWTEAKKSVACFSCQTPFPPVPKAAPPK 391
Query: 360 -------SSG---------------------------NKPGLY-----VACPKCKKHFCL 380
SSG PGL + ++ C
Sbjct: 392 IKLKVKESSGVGGQTAANIAKAKGRGEVPAKTNTVTAPTPGLLPEAIKAGVSESGRYKCP 451
Query: 381 EC--------DIYIHESLHNCPGC 396
EC DIY HE++HNCPGC
Sbjct: 452 ECEEHFCIDCDIYAHETIHNCPGC 475
>gi|432876344|ref|XP_004073002.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 2-like [Oryzias latipes]
Length = 340
Score = 234 bits (597), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 147/381 (38%), Positives = 198/381 (51%), Gaps = 73/381 (19%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + ++ RR + R L
Sbjct: 11 WEGGY--ERTWEVLKEDESGSLKATVEDILFQSKRRRVVESHGQVRLGMMRHLYVVVDCS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVT--VKDGVANCLT--DLGGSP 137
+ + D +P+R+A K +E FV E+FDQNP+SQ+G + + D L + G+P
Sbjct: 69 RSMEDQDLKPNRLAATLKLLEGFVDEYFDQNPISQVGKXSSYLIDDHRRALNTGEASGNP 128
Query: 138 ESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
+ HI AL + C G+ SL NAL+L L +P + REVLI+ S+L+TCDP +I +
Sbjct: 129 KKHITALKKAVDSACVGEPSLYNALNLAVQTLKHMPGHTSREVLIILSSLTTCDPANIYD 188
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAE 255
IQ K K+R SVIGLSAE+ +C L ++TGGSY V LDESHFKEL+M H PPPA +
Sbjct: 189 LIQTLKGLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHVKPPPA-SS 247
Query: 256 FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 315
+ +LI+MG L LVS
Sbjct: 248 SSECSLIRMG---------------------------------------------LTLVS 262
Query: 316 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCK 375
+PHLARS+HHLFP+ PF E + L R C GCQ L YV CP C+
Sbjct: 263 APHLARSFHHLFPMVPFLESSVEELQGSR-----FCEGCQGEL----RDKSAYV-CPSCR 312
Query: 376 KHFCLECDIYIHESLHNCPGC 396
FC+ECD++IH+SLH CP C
Sbjct: 313 GVFCVECDLFIHDSLHCCPCC 333
>gi|340378764|ref|XP_003387897.1| PREDICTED: general transcription factor IIH subunit 2-like
[Amphimedon queenslandica]
Length = 354
Score = 234 bits (596), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 208/403 (51%), Gaps = 62/403 (15%)
Query: 9 LNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR 68
+ G+ + EED GG WE Y +R WEA+QED G + D+ Y + RR+
Sbjct: 1 MEGDTVDVEED------GGGYTWEGEY--ERPWEAIQEDIEGHILAPDDDFMYKTK-RRK 51
Query: 69 LRD----------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIG 118
L + R ++ Q + D +P+R ++ F+ EFFD NP+SQ
Sbjct: 52 LFNHESGVKLGIMRHILIVVDSTQSMNDKDLKPNRFTCTKTVLKKFLDEFFDFNPISQRD 111
Query: 119 LVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREV 178
+ N + ++ + H +AL + CSG+ SLQNA++L +L IP++ REV
Sbjct: 112 R---RRYHTNTIINIC-NVSVHKRALDTDVECSGECSLQNAMELSLRMLRHIPTHASREV 167
Query: 179 LILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH 238
+I++ +L++CDPG+I TI + IRCSVIGL+A + +C +C+ T G Y V LDE H
Sbjct: 168 IIIHGSLTSCDPGNIFSTINDFNQQNIRCSVIGLAASVKLCHTICERTSGVYQVILDEVH 227
Query: 239 FKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKAR 298
F++ +++H PP A A LIKM GEG + G C+++
Sbjct: 228 FRDCLLQHCRPPGVKASTETA-LIKM------GEGVSLNIKLWPHYQFVCGKEQAWCQSK 280
Query: 299 VCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL 358
CELP +C CG+ LV +P LARSYHHLFP+ F E T
Sbjct: 281 YCELPVECVTCGITLVLAPQLARSYHHLFPLKMFIEST---------------------- 318
Query: 359 LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE-SLR 400
+YV CP C+ FC++CD+Y HE+LHNCPGCE SLR
Sbjct: 319 --------VYV-CPSCRHSFCIDCDLYCHETLHNCPGCENSLR 352
>gi|258571509|ref|XP_002544558.1| suppressor of stem-loop protein 1 [Uncinocarpus reesii 1704]
gi|237904828|gb|EEP79229.1| suppressor of stem-loop protein 1 [Uncinocarpus reesii 1704]
Length = 413
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 122/279 (43%), Positives = 172/279 (61%), Gaps = 17/279 (6%)
Query: 85 AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL 144
E D RP+R + + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI AL
Sbjct: 82 TEKDLRPTRYLLTLRFAQEFVLEYFEQNPISQLGIIGMRDGLAVKISDMSGNPTEHILAL 141
Query: 145 MGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 202
+G SLQNAL++ +G L PS+G REVLIL+ AL + DPGDI +T+
Sbjct: 142 QALRAKDPNGLPSLQNALEMARGTLFHTPSHGTREVLILFGALLSSDPGDIHQTVSSLIS 201
Query: 203 SKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPPPAIAEFAI 258
KIR V+GL+AE+ IC+ +C T Y VAL+E HF+EL+ME PP ++
Sbjct: 202 DKIRVGVVGLAAEVAICREICAKTNAGDDSGYGVALNEQHFRELMMETTTPPVTYSKKQA 261
Query: 259 AN-LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSP 317
AN L+ MGFP R E + S+C+CH G GY C RC ++VC LP +C CGL L+ S
Sbjct: 262 ANSLLMMGFPSRTVEPAPSMCACHSMPSRG-GYLCSRCGSKVCTLPAECPACGLTLILST 320
Query: 318 HLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST--CFGC 354
HLARSYHHLFP+ + EV P ++ ++ CF C
Sbjct: 321 HLARSYHHLFPLINWIEV-------PWKKASTSANCFAC 352
>gi|225678604|gb|EEH16888.1| TFIIH basal transcription factor complex p44 subunit
[Paracoccidioides brasiliensis Pb03]
Length = 493
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 137/359 (38%), Positives = 184/359 (51%), Gaps = 36/359 (10%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
GG E WE S R+WE L E G +R + RR LRD R L+
Sbjct: 55 GGAE-WEVS----RTWETLVEGADGTIRATVEGLLEAGKRRRVLRDTTPLQRGIIRHLIL 109
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
+E D RP+R + + + FVREFFDQNP+SQ+G+V ++DG+A ++D+ G+
Sbjct: 110 ILDLSSAMSEKDLRPTRYLLTLRYAQDFVREFFDQNPISQLGVVGMRDGLAVRISDMSGN 169
Query: 137 PESHIKALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P HI A+ G G SLQNAL++ +G L PS+G REVLI+Y AL + DPGDI
Sbjct: 170 PTEHILAIQGLRAKDPKGMPSLQNALEMARGALFHTPSHGTREVLIIYGALLSSDPGDIH 229
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPP 250
+TI KI V+GL+A++ IC+ L T Y+VA++E HF+EL++ PP
Sbjct: 230 KTITSLITDKIHVYVLGLAAQVSICQELVTRTNNGDDSGYNVAMNEQHFRELVLNVTTPP 289
Query: 251 PAIAEFAI---------------ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRC 295
L+ MGFP R ++C+CH GY CPRC
Sbjct: 290 ATTLASHTAAAAANGTGTNPSTDGTLLPMGFPNRHLTPHPTLCACHSTPSRS-GYLCPRC 348
Query: 296 KARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC 354
+VC LP C C L L+ S HLARSYHHLFP+ + EV+ R CF C
Sbjct: 349 CTKVCTLPASCPSCNLTLILSTHLARSYHHLFPLMNWVEVSWRKAARAEAEGRVGCFAC 407
>gi|260943474|ref|XP_002616035.1| hypothetical protein CLUG_03276 [Clavispora lusitaniae ATCC 42720]
gi|238849684|gb|EEQ39148.1| hypothetical protein CLUG_03276 [Clavispora lusitaniae ATCC 42720]
Length = 459
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 145/424 (34%), Positives = 215/424 (50%), Gaps = 64/424 (15%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRR------------RLRDRSLVAT 77
AWE Y R+W+ +++D S RP++ R+ R R++V
Sbjct: 42 AWEDEY--QRTWDIVKDDTS---RPVELLVQQMVDARKAKLSRNAATPFQRGIIRTVVVV 96
Query: 78 TARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
+ E D RP+R ++ FV EFFDQNP++Q+ +V +++GVA+ +++L GS
Sbjct: 97 VDASRAMLEKDLRPTRFGATVAHLQDFVAEFFDQNPIAQMAVVMMRNGVASVVSELSGSA 156
Query: 138 ESHIKALMG------KLGCSGDSSLQNALDLVQGLLSQ---IPSYGHREVLILYSALSTC 188
+ HI+ L L GD SLQNAL+L + LL+ S RE+++++ AL T
Sbjct: 157 QLHIERLRALRARQHTLEPKGDPSLQNALELARALLTAGGGPTSRSSREIVVVFGALFTS 216
Query: 189 DPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIM 244
DPGDI +TI +IR VIGL+A++ IC+ L T Y V + ++HF+EL+M
Sbjct: 217 DPGDIHQTIDSLVRDEIRVRVIGLAAQVAICRELVARTNAGECAGYGVIVGDAHFRELLM 276
Query: 245 EHAPPPPAIAEFAIAN-----LIKMGFPQRA--GEGSISICSCHKEVK-VGVGYTCPRCK 296
P A+A A +++MGFP RA G +C+CH + GY CP+C+
Sbjct: 277 ACVEPL-AVARRAAETATGVPVLRMGFPSRAPAAPGMPVLCACHPQGGGADTGYWCPQCR 335
Query: 297 ARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST------ 350
+RVC LP C +CGL L+ S HLAR++HHL P ++ N S +
Sbjct: 336 SRVCSLPCVCPVCGLMLILSTHLARTHHHLVPPPDYETKEETKETKETNDSNNDNSNSNN 395
Query: 351 ----------------CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCP 394
CFGC L G AC C + FC++CD+++HE LHNCP
Sbjct: 396 DSSNSNNDSSGNSSERCFGC---LAQGDGALGARYACAACGQRFCIDCDVFVHEVLHNCP 452
Query: 395 GCES 398
GCE+
Sbjct: 453 GCEA 456
>gi|326433104|gb|EGD78674.1| hypothetical protein PTSG_01653 [Salpingoeca sp. ATCC 50818]
Length = 394
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/379 (35%), Positives = 217/379 (57%), Gaps = 40/379 (10%)
Query: 41 WEALQEDESGFLRPIDNSAFYHAQYRRR--------------LRDRSLVATTARIQKAAE 86
W+ ++E E G L + +A H + R+R +R LV + Q +
Sbjct: 13 WDEVREGEDGTLCIDEITAQTHTRVRKRHALAPQLGPCKRGMIRHVYLVVDLS--QDMDD 70
Query: 87 MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPE---SHIKA 143
D +P+R+ + FV FF +NP+S +G++ +++GVA + +L G+ + H+ A
Sbjct: 71 DDLKPNRLTCTVHNLIDFVHSFFHENPISDMGVIVMREGVARVICELNGNKDVLVEHLSA 130
Query: 144 LM---GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKC 200
L+ L +G++SLQNAL + + L IPS+ REV+I+ + L++CDPG+I++TI+
Sbjct: 131 LLHPKTPLFPAGEASLQNALAVARRSLRSIPSHATREVVIVQATLASCDPGNILDTIKSL 190
Query: 201 KESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN 260
+ K+ +V+GL+A + IC+ +C++TGG ++VALDE H EL++ PP A A+
Sbjct: 191 RSDKVTVNVVGLAAAVRICETVCKETGGIHAVALDEDHLGELLLALTTPPAAPADADATQ 250
Query: 261 LIKMGFPQRAGEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSP 317
+ ++GF A EG K+ ++G+ GY CP+C+A+V ++P C CGL LVSSP
Sbjct: 251 M-RLGFA--AYEGRRPTVRRQKDGQLGITTGGYVCPQCRAKVSDIPQRCTTCGLMLVSSP 307
Query: 318 HLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKH 377
HLA+++HH+FP+ F EVT + C GC Q L ++ P CP C
Sbjct: 308 HLAKTFHHMFPLPVFKEVT--------LAAAEWCAGCTQPLPTT--LPAY--ECPSCGAR 355
Query: 378 FCLECDIYIHESLHNCPGC 396
CL+CD+Y+H LHNCPGC
Sbjct: 356 VCLDCDVYVHRELHNCPGC 374
>gi|315049235|ref|XP_003173992.1| stem-loop protein 1 suppressor [Arthroderma gypseum CBS 118893]
gi|311341959|gb|EFR01162.1| stem-loop protein 1 suppressor [Arthroderma gypseum CBS 118893]
Length = 487
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/435 (31%), Positives = 212/435 (48%), Gaps = 103/435 (23%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
+GG E WE + R+WE L E G + +S + +R L+D R ++
Sbjct: 59 HGGAE-WEVA----RTWETLVEGADGTITATVDSLLEADKRKRLLKDTTPLQRGIIRHMI 113
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
AE D RP+R + + + FV+EFF+QNP+SQ+G++ +KDG+A ++++ G
Sbjct: 114 LVLDLSFAMAEKDLRPTRYLLTLRYAQKFVQEFFEQNPISQLGIMGMKDGIAVQISEMSG 173
Query: 136 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P H+ AL + G SLQNAL++ +G L PS+G REV+I+ AL + DPGDI
Sbjct: 174 NPTEHMLALHALRSEDPKGLPSLQNALEMARGSLYHTPSHGTREVIIILGALLSSDPGDI 233
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 249
+TI K+R +IGL+A++ +C+ +C T SY VA+DE H +L+++ P
Sbjct: 234 HQTITSLVADKVRVGIIGLAADVAVCREICAKTNDGNDSSYGVAIDEKHLWDLLLDVTTP 293
Query: 250 PPAIAE-FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRI 308
P ++ ++ ++L+ MGFP R E S+C+CH + G GY C RC ++VC LP +C
Sbjct: 294 PITYSQRYSSSSLLMMGFPSRTVEPFPSLCACHSKPVRG-GYMCSRCGSKVCSLPAECPT 352
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
C L L+ S HLARSYHHLFP+ + EV
Sbjct: 353 CNLTLILSTHLARSYHHLFPLINWVEV--------------------------------- 379
Query: 369 VACPKCKKH---------------------------------------------FCLECD 383
P + FC++CD
Sbjct: 380 ---PWKRASRSISCFACGNLFPAVPPRDKWDKRDKSIKGMSVSSRYECTVCHHHFCIDCD 436
Query: 384 IYIHESLHNCPGCES 398
++ HE +HNCPGC+S
Sbjct: 437 VFAHEVVHNCPGCQS 451
>gi|405122345|gb|AFR97112.1| RNA polymerase II transcription factor [Cryptococcus neoformans
var. grubii H99]
Length = 425
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 138/397 (34%), Positives = 205/397 (51%), Gaps = 56/397 (14%)
Query: 3 NSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYH 62
+S R+ + +++D + G +AWE Y +SW+ +QEDESG L +
Sbjct: 28 SSRRQGRGAAGRGKGKNKDLSDQSGRQAWEGEY--QKSWDIVQEDESGSLESAVETLLAR 85
Query: 63 AQYRRRLRD-----RSLVATTARIQKAAE----MDFRPSRMAVVAKQVEAFVREFFDQNP 113
+ +R L RS++ I +E D+RP+R V+ + +V E+FDQNP
Sbjct: 86 GRRKRALMSDTPVRRSIIRHVFIIIDLSESMLDKDYRPTRFEVILGYLRTYVVEWFDQNP 145
Query: 114 LSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIP 171
L QIG++ ++ SPE ++AL K L SG+ SLQN L + +G ++ +P
Sbjct: 146 LGQIGVIAMR------------SPEEIVRALSDKRKLEPSGEPSLQNGLVMAKGGMAHLP 193
Query: 172 SYGHREVLILYSALSTCDPG---DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG 228
S E+L+++SA+ST DP I + IR S++ LS E+ ICK + + TGG
Sbjct: 194 STSSLEILVIFSAISTADPDGPVTIHNVLDTLATGHIRTSILSLSGEIKICKQIAERTGG 253
Query: 229 SYSVALDESHFKELIMEHAPPPPAIAEFAIAN-----------------------LIKMG 265
+ VALD+ H K+L+ E PPP AN L+ MG
Sbjct: 254 KFGVALDQEHLKDLLWETIPPPATTIAPVTANVRSALAAGGRGPNQTGERAPAGDLMVMG 313
Query: 266 FPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHH 325
FP R G ++C+CH ++ G GY CPRC +++C++PTDC +CGL +VSSPHLARS+
Sbjct: 314 FPIRLPLGGETMCACHGLLRKG-GYLCPRCGSKLCDVPTDCEVCGLMVVSSPHLARSFWF 372
Query: 326 LFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSG 362
LFP+A + PL + D S TCFGC G
Sbjct: 373 LFPVANYG---PLAIED-VVESSETCFGCDSEFSDVG 405
>gi|295657028|ref|XP_002789089.1| suppressor of stem-loop protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284987|gb|EEH40553.1| suppressor of stem-loop protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 513
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 135/361 (37%), Positives = 184/361 (50%), Gaps = 38/361 (10%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
GG E WE S R+WE L E G +R + +R LRD R L+
Sbjct: 55 GGAE-WEVS----RTWETLVEGADGTIRATVEGLLEAGKRKRVLRDTTPLQRGIIRHLIL 109
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
+E D RP+R + + + FVREFFDQNP+SQ+G++ ++DG+A ++D+ G+
Sbjct: 110 ILDLSSAMSEKDLRPTRYLLTLRYAQDFVREFFDQNPISQLGVLGMRDGLAVRISDMSGN 169
Query: 137 PESHIKALMGKLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P HI A+ G G SLQNAL++ +G L PS+G REVLI+Y AL + DPGDI
Sbjct: 170 PTEHILAIQGLRAKDPKGMPSLQNALEMARGALFHTPSHGTREVLIIYGALLSSDPGDIH 229
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPP 250
+TI KI V+GL+A++ IC+ L T Y+VA++E HF+EL++ PP
Sbjct: 230 KTITSLITDKIHVYVLGLAAQVSICQELVTRTNNGDDSGYNVAMNEQHFRELVLNVTTPP 289
Query: 251 PAIAEFAI-----------------ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCP 293
L+ MGFP R ++C+CH GY CP
Sbjct: 290 ATTLASHTTTTTGAANGTSTNTSTDGTLLPMGFPNRHLTPHPTLCACHSTPSRS-GYLCP 348
Query: 294 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFG 353
RC +VC LP C C L L+ S HLARSYHHLFP+ + EV+ R CF
Sbjct: 349 RCCTKVCTLPASCPSCKLTLILSTHLARSYHHLFPLMNWVEVSWRKAARAEAEGRVGCFA 408
Query: 354 C 354
C
Sbjct: 409 C 409
>gi|451846168|gb|EMD59479.1| hypothetical protein COCSADRAFT_41319 [Cochliobolus sativus ND90Pr]
Length = 496
Score = 227 bits (578), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 188/366 (51%), Gaps = 60/366 (16%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM 145
E D RP+R + + ++REFF+QNP+SQ+ ++ + DGV +++L G+P H+ A+
Sbjct: 116 EKDMRPNRFITMINYTQDYIREFFEQNPISQMSVLGMHDGVCIRVSELSGNPAEHVAAIQ 175
Query: 146 GKLGC------SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
G G SLQNAL+L + L P++G REV++++ +L + DPGDI ++++
Sbjct: 176 GLRSKDDGKEPKGSPSLQNALELARATLYHTPNHGTREVIVVFGSLLSLDPGDIHQSVKA 235
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPP----P 251
C +IR S+IG+ A + IC + + T Y++A D+ +EL+ PP P
Sbjct: 236 CVRDRIRVSIIGMGARLKICTEIVKRTNAGDESEYTIATDQEMLRELLQATTTPPVIRQP 295
Query: 252 AIAEF-----------AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 300
+ + + A L+ MGFP R E +++C+CH + +G GYTC RC A+VC
Sbjct: 296 LLTDKTAPVTTTQSSESAAALMMMGFPSRVVEDQLTMCACHGNLTMG-GYTCSRCSAKVC 354
Query: 301 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC------ 354
LP C C L L+ S HLARSYHHLFP+ + V+ + R C GC
Sbjct: 355 SLPITCPSCQLTLLLSTHLARSYHHLFPLRNWATVS---WSRAREMGSKQCVGCLAAFSN 411
Query: 355 ------------------------QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESL 390
S ++ G Y C C+ HFC++CD++ H L
Sbjct: 412 PPSNAKENGEAKRDSEAKVAKKDDDDSEEQKASESGRY-ECRACESHFCIDCDMFAHMVL 470
Query: 391 HNCPGC 396
HNCPGC
Sbjct: 471 HNCPGC 476
>gi|396458460|ref|XP_003833843.1| hypothetical protein LEMA_P066040.1 [Leptosphaeria maculans JN3]
gi|312210391|emb|CBX90478.1| hypothetical protein LEMA_P066040.1 [Leptosphaeria maculans JN3]
Length = 618
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 188/374 (50%), Gaps = 67/374 (17%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM 145
E D RP+R + + +VREFF+QNP+SQ+ ++ + DGV +++L G+P H+ A+
Sbjct: 217 EKDMRPNRFFAMINYTQDYVREFFEQNPISQMSVLGMHDGVCIRVSELSGNPAEHVAAIA 276
Query: 146 -------GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
GK G SLQNAL+L + L P +G REV+I++ +L + DPGDI T++
Sbjct: 277 SLRSKEDGKEP-KGAPSLQNALELARATLYHTPPHGTREVIIVFGSLLSLDPGDIHTTVK 335
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIA 254
C +IR S+IG+ A + IC + T Y+VA+D+ KEL++ PP +
Sbjct: 336 ACVRDRIRVSIIGMGARLKICTEIVTRTNAGDTSEYTVAIDQEALKELLLA-TTTPPVVR 394
Query: 255 EF----------AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT 304
E + A L++MGFP R E +++C+CH + +G GYTC RC A+VC LP
Sbjct: 395 ETKQSGTEPPPESAAALMRMGFPSRVIEDQLTMCACHGNLTLG-GYTCSRCSAKVCSLPI 453
Query: 305 DCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL------ 358
C C L L+ S HLARSYHHLFP+ + V+ R + C GC +
Sbjct: 454 TCPSCQLTLLLSTHLARSYHHLFPLRNWATVS---WARAREVGSTQCTGCLAAFSKPPPK 510
Query: 359 ------------LSSGNKPGLYVA----------------------CPKCKKHFCLECDI 384
+P + A C C HFC++CD+
Sbjct: 511 DNNRHVVEDEDEDDDATQPRKHAASTTQDDALDGEDQRASPSGRYECQACNSHFCIDCDV 570
Query: 385 YIHESLHNCPGCES 398
+ H LHNCPGC S
Sbjct: 571 FAHMVLHNCPGCLS 584
>gi|116199505|ref|XP_001225564.1| hypothetical protein CHGG_07908 [Chaetomium globosum CBS 148.51]
gi|88179187|gb|EAQ86655.1| hypothetical protein CHGG_07908 [Chaetomium globosum CBS 148.51]
Length = 463
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 143/426 (33%), Positives = 197/426 (46%), Gaps = 114/426 (26%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSLVATTA 79
AWE RSWE + E E G I A A+ RRRL RD R ++
Sbjct: 56 AWEDI---KRSWEHVVETEDG---SITVGALLEAEKRRRLMRDTTPFQRGIIRHVMLVLD 109
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
AE D P+R + FVRE+F+QNP+SQ+G+V ++DG+A ++D+GG+P
Sbjct: 110 MSFAMAEKDLLPNRYLLTLNYAVDFVREYFEQNPISQLGIVGMRDGIAVRISDMGGNPAE 169
Query: 140 HIKAL---MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMET 196
HI+ L + G+ SLQNAL++ +G L PS+G RE+LI+Y AL + DPGDI +T
Sbjct: 170 HIEKLRVWAEQQEPQGNPSLQNALEMCRGALFHTPSHGTREILIIYGALLSSDPGDIHDT 229
Query: 197 IQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPPPA 252
I +IR S++GL+A++ IC+ LC T G +Y+VAL E HF+EL + PP
Sbjct: 230 ITNLLADRIRVSIVGLAAQVAICEQLCSRTNGGDPSNYAVALHEQHFRELFLAATTPP-- 287
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 312
VC LP +C +C L
Sbjct: 288 ----------------------------------------------VCRLPAECPVCALT 301
Query: 313 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-------------- 358
LV S HLARSYHHLFP+ + V+ D R R S CF C +
Sbjct: 302 LVLSTHLARSYHHLFPLRGWAAVS---WADARARGSSACFACLAAFPAVPPSGQIQTQTQ 358
Query: 359 --------------------------LSSGNKPGLYVACPKCKKHFCLECDIYIHESLHN 392
++G AC C HFC++CD++ HE +HN
Sbjct: 359 VQANGNGNGNGRDTDRDKGRDAAEVKAAAGVSESGRYACTVCNNHFCIDCDVFAHEVIHN 418
Query: 393 CPGCES 398
CPGC+S
Sbjct: 419 CPGCQS 424
>gi|399216155|emb|CCF72843.1| unnamed protein product [Babesia microti strain RI]
Length = 408
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/405 (34%), Positives = 206/405 (50%), Gaps = 32/405 (7%)
Query: 18 EDEDDNLNGGLE------AWERSYADDRSWEALQEDE------------SGFLRPIDNSA 59
E+ +D LN E AWE+ +R+WE L E++ RPID+
Sbjct: 8 EEYEDTLNDFQEDALAQYAWEQDL--ERTWEKLIENDGELKFSQSTKARKNIDRPIDSGV 65
Query: 60 FY-HAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIG 118
+ +R R+++ + ++DF+P+R+ Q F+RE F Q P+SQ+G
Sbjct: 66 SDGNNIIVKRGIIRNILILFDLSDRMRDIDFKPNRLHTAVAQTSKFIRELFYQCPISQVG 125
Query: 119 LVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHR 176
+V +K+ +A ++ G + + I L L G GD SLQNAL++ LL +P Y R
Sbjct: 126 IVAMKNKLAKLISPFGSNTDEQISRLNDLLSDGPEGDISLQNALEMSISLLDDVPQYTTR 185
Query: 177 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDE 236
E+LI++ ++ TCDPG+I TI++ K+ I I LS+E++I KH+C +T GS+SVA+D
Sbjct: 186 EILIVFGSIKTCDPGNIFATIKRLKKHHITVDAISLSSELYILKHICTETNGSHSVAIDT 245
Query: 237 SHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCK 296
L + PP + + L+K+GFP + S+C CH ++ V YTCP+C
Sbjct: 246 HDLTSLFNIYT-NPPRWQDGMLPILVKVGFPSLTKSNTASLCVCHGKL-VFTSYTCPQCS 303
Query: 297 ARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQ 356
A C +P+ C+ C + LVS + R +HHL F V L TC C
Sbjct: 304 AITCNIPSRCKCCQIYLVSPADVCRGFHHLCAPPEFTNVPADILG-----GCDTCASCSV 358
Query: 357 SLLSSGNKPGLYVA--CPKCKKHFCLECDIYIHESLHNCPGCESL 399
L +S G A CP C K FC CD +IH +LH CP C L
Sbjct: 359 ELKNSVMYSGEDRAKQCPGCMKIFCRICDEFIHGTLHQCPFCIKL 403
>gi|302418082|ref|XP_003006872.1| suppressor of stem-loop protein [Verticillium albo-atrum VaMs.102]
gi|261354474|gb|EEY16902.1| suppressor of stem-loop protein [Verticillium albo-atrum VaMs.102]
Length = 468
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/407 (35%), Positives = 208/407 (51%), Gaps = 51/407 (12%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSLVATTARIQKAAEMD 88
RSWE ++E G L D A+ RRRL RD R LV AE D
Sbjct: 45 RSWETVEEGADGSL---DVEGRAEAEKRRRLLRDTTPLQRGIIRHLVLVLDMSFAMAEKD 101
Query: 89 FRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MG 146
P+R+ + + FV+E+F+QNP+SQ+G+V ++DGVA ++++GG+P H++A+
Sbjct: 102 LLPTRLRLTWRLAREFVKEYFEQNPISQMGIVGMRDGVAVRVSEMGGNPVEHVEAINKWA 161
Query: 147 KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIR 206
++ G SLQNAL++ +G L PS+G REVL++Y AL + DPGDI +TI +IR
Sbjct: 162 EIDPQGSPSLQNALEMCRGALFHAPSHGTREVLVVYGALLSSDPGDIHDTIANLLTDRIR 221
Query: 207 CSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAEF-AIANL 261
S++GL+A++ IC+ LC+ T Y++ALDE H++EL++ PP + + A+L
Sbjct: 222 VSIVGLAAQVAICEELCRKTNAGDATQYNIALDEMHYRELLLRTTTPPVTRTQAQSTASL 281
Query: 262 IKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS---- 315
+ MGFP R A + + C+CH V GY C RC RVC LP +C CGL
Sbjct: 282 LMMGFPSRTLAPADTTAYCACHN-TPVREGYLCTRCGTRVCRLPAECPACGLTPHPLHPP 340
Query: 316 ------------------SPHLARSYHHLFPIAPFDEVTP------LCLNDPRNRSRSTC 351
P A S +APF + D R R +
Sbjct: 341 RPLLPPPLSRCATGSRSPGPRAAASRACYSCLAPFPDPPAQRRGHRANGTDGRRRGDAGD 400
Query: 352 FGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
+ G AC C HFC++CD++ HE +HNCPGC+S
Sbjct: 401 EEPAPAPKQKGVSESSRYACQVCGNHFCIDCDVFAHEVIHNCPGCQS 447
>gi|324520669|gb|ADY47691.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 345
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 183/344 (53%), Gaps = 29/344 (8%)
Query: 19 DEDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
+EDD G WE +YA+ + E L+EDESG + + A+ +RRL DR
Sbjct: 6 NEDDEQKG--YTWEIAYAEGLNIREVLEEDESGSVEKSVAKLIFEAKRKRRLTDRP---- 59
Query: 78 TARIQ---------------KAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 122
ARI+ E P+R+ V K + F+ +F +QNP+SQ+G++
Sbjct: 60 -ARIRLGIMRYVYIIIDCSLAMTEKTLLPTRLNVTLKVLNQFLEKFSEQNPISQVGIIIC 118
Query: 123 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 180
+D A L L G+ + +AL + + C G+ SLQN L + L P + RE++
Sbjct: 119 RDKRAERLIQLTGTIRAVKEALSTINEASCHGEFSLQNGLLVALRSLQHFPGHASREIIA 178
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 240
+ ++LSTCDP +I T + K + +RCSVIGLSAE+F+ K LC T G Y V LD HF
Sbjct: 179 IVASLSTCDPSNIFGTFEVLKRNNVRCSVIGLSAEVFVYKKLCSTTSGRYDVILDGDHF- 237
Query: 241 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKV---GVGYTCPRCKA 297
ELI+ PP + +++MGFP + C CH+ G G+ CP+C A
Sbjct: 238 ELILNEYTNPPVTKRNVESCVVRMGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQCGA 297
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLN 341
R C LP +CR+C L L+S+P LARS+HHL P+ F EV C+
Sbjct: 298 RYCSLPVECRVCKLMLISAPQLARSFHHLLPLPAFKEVIDYCVK 341
>gi|336468464|gb|EGO56627.1| hypothetical protein NEUTE1DRAFT_84011 [Neurospora tetrasperma FGSC
2508]
gi|350289275|gb|EGZ70500.1| TFIIH basal transcription factor complex, subunit SSL1 [Neurospora
tetrasperma FGSC 2509]
Length = 416
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 133/342 (38%), Positives = 178/342 (52%), Gaps = 48/342 (14%)
Query: 15 EEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSL 74
E D++ NG A RS SWE ++ L D S A+ R + R L
Sbjct: 7 EYASDDELKRNGKRTADGRSKQSKASWEDVKRSWDTVLETAD-SGLSIAEIREAEKRRRL 65
Query: 75 VATTARIQKA---------------AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGL 119
+ T +Q+ A+ D P+R VV FVRE+F+QNP+SQ+G+
Sbjct: 66 LRDTTPLQRGIIRHLMLVLDMSFAMADKDLLPNRYRVVLNNAIGFVREYFEQNPISQLGI 125
Query: 120 VTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVL 179
V ++DG+A ++DL G+P HI+ +Q PS+ REVL
Sbjct: 126 VGMRDGIAVRISDLSGNPAEHIE-------------------------NQTPSHATREVL 160
Query: 180 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG---GSYSVALDE 236
I+Y AL + DPGDI +TI +IR SV+GL+ ++ IC LC+ T G+YSVA+DE
Sbjct: 161 IIYGALVSIDPGDIHDTINDLVADRIRVSVVGLAGQVAICSELCKRTNNHDGNYSVAVDE 220
Query: 237 SHFKELIMEHAPPPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCP 293
H KEL PP E A+L+ MGFP R A + +S C+CH + GYTCP
Sbjct: 221 VHLKELFFAATTPPVTRTPEQNTASLLMMGFPSRTLAPKDHVSFCACHAK-PTREGYTCP 279
Query: 294 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 335
RC +VC LP DC IC L L+ S HLARSYHHLFP+ F EV
Sbjct: 280 RCGIKVCRLPIDCPICKLTLIQSTHLARSYHHLFPLKVFVEV 321
>gi|449019861|dbj|BAM83263.1| similar to TFIIH subunit SSL1 [Cyanidioschyzon merolae strain 10D]
Length = 549
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 143/450 (31%), Positives = 222/450 (49%), Gaps = 87/450 (19%)
Query: 30 AWERSYADDRSWEALQEDESG---FLR-PIDNSAFYHAQYRRRLRDRSLVATTARIQKAA 85
AWER Y +RSWEA+ ++G F R +D H R L+D + A R+ +A
Sbjct: 93 AWERRY--ERSWEAIGVSDAGGGIFRRDALDQQRQRHRDLERVLQDSAASAARRRVGRAL 150
Query: 86 EM---------------------------DFRPSRMAVVAKQVEAFVREFFDQNPLSQIG 118
+ D +PSR + + + FV++FF +N +SQ+
Sbjct: 151 GLIRFLVLALDLSAAVRSRSRSSLSSSSQDLKPSRWSAILSGAQYFVQDFFSENAVSQLA 210
Query: 119 LVTVKDGVANCLTDLGGSPESHIKAL------MGKL---GCSGDSSLQNALDLVQGLLSQ 169
+V ++DG+A ++++ GS HI AL K G G +SLQN L+L + +
Sbjct: 211 IVILQDGIAAQVSEMSGSVRLHIDALRSLQRGTNKFLHDGDGGQTSLQNCLELGLRIHAS 270
Query: 170 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 229
+P +G RE+LI+Y LSTCDPGDI +TIQ C ++ IR SVIGL AE++I + + T G+
Sbjct: 271 VPRFGTREMLIVYGGLSTCDPGDIHKTIQNCVDASIRVSVIGLGAEVYILRATAERTQGT 330
Query: 230 YSVALDESHFKELIMEHAPP--------------PPAIAEFAIANLIKMGFPQRAGEGSI 275
Y V +D HF +L+ + PP P+ A + ++ MGFP + +
Sbjct: 331 YRVPMDNDHFHQLLRQQVPPPPPPPQASRSTKHLEPSEAPWTAMQMV-MGFPPKLARDRV 389
Query: 276 SICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDE- 334
+ + +G+ CPRC+ + E+P +C +CGL L S HLARSYHH+FP F+E
Sbjct: 390 -VVAIDTRKACRLGFECPRCRQWLSEVPGNCILCGLTLTSVLHLARSYHHIFPAPRFEER 448
Query: 335 -------------------VTPLCLNDPRNRS-----RSTCFGCQQSLLSSGNKPGLYVA 370
V+P + + + + C GC ++L K L +
Sbjct: 449 EEPSSSRASALMSDEEGFSVSPSSVPERMPDAAAPPVKWQCSGCSRTL---STKDDLQLQ 505
Query: 371 CPK-CKKHFCLECDIYIHESLHNCPGCESL 399
C C++ FC++CD +HE LH CP C ++
Sbjct: 506 CTGICRQLFCIDCDQLVHERLHTCPACLAM 535
>gi|324520938|gb|ADY47747.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 340
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 126/338 (37%), Positives = 181/338 (53%), Gaps = 29/338 (8%)
Query: 19 DEDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
+EDD G WE +YA+ + E L+EDESG + + A+ +RRL DR
Sbjct: 6 NEDDEQKG--YTWEIAYAEGLNIREVLEEDESGSVEKSVAKLIFEAKRKRRLTDRP---- 59
Query: 78 TARIQ---------------KAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 122
ARI+ E P+R+ V K + F+ +F +QNP+SQ+G++
Sbjct: 60 -ARIRLGIMRYVYIIIDCSLAMTEKTLLPTRLNVTLKVLNQFLEKFSEQNPISQVGIIIC 118
Query: 123 KDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 180
+D A L L G+ + +AL + + C G+ SLQN L + L P + RE++
Sbjct: 119 RDKRAERLIQLTGTIRAVKEALSTINEASCHGEFSLQNGLLVALRSLQHFPGHASREIIA 178
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFK 240
+ ++LSTCDP +I T + K + +RCSVIGLSAE+F+ K LC T G Y V LD HF
Sbjct: 179 IVASLSTCDPSNIFGTFEVLKRNNVRCSVIGLSAEVFVYKKLCSTTSGRYDVILDGDHF- 237
Query: 241 ELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKV---GVGYTCPRCKA 297
ELI+ PP + +++MGFP + C CH+ G G+ CP+C A
Sbjct: 238 ELILNEYTNPPVTKRNVESCVVRMGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQCGA 297
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 335
R C LP +CR+C L L+S+P LARS+HHL P+ F EV
Sbjct: 298 RYCSLPVECRVCKLMLISAPQLARSFHHLLPLPAFKEV 335
>gi|85080851|ref|XP_956615.1| suppressor of stem-loop protein 1 [Neurospora crassa OR74A]
gi|28881240|emb|CAD70478.1| related to transcription factor TFIIH chain p47 [Neurospora crassa]
gi|28917686|gb|EAA27379.1| suppressor of stem-loop protein 1 [Neurospora crassa OR74A]
Length = 416
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 131/342 (38%), Positives = 178/342 (52%), Gaps = 48/342 (14%)
Query: 15 EEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSL 74
E D++ +G A RS SWE ++ L D S A+ R + R L
Sbjct: 7 EYASDDELKRHGKRTADGRSKQTKASWEDVKRSWDTVLETAD-SGLSIAEIREAEKRRRL 65
Query: 75 VATTARIQKA---------------AEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGL 119
+ T +Q+ A+ D P+R VV FVRE+F+QNP+SQ+G+
Sbjct: 66 LRDTTPLQRGIIRHLMLVLDMSFAMADKDLLPNRYRVVLNNAIGFVREYFEQNPISQLGI 125
Query: 120 VTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVL 179
V ++DG+A ++DL G+P HI+ +Q PS+ RE+L
Sbjct: 126 VGMRDGIAVRISDLSGNPAEHIE-------------------------NQTPSHATREIL 160
Query: 180 ILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG---GSYSVALDE 236
I+Y AL + DPGDI +TI +IR SV+GL+ ++ IC LC+ T G+YSVA+DE
Sbjct: 161 IIYGALVSIDPGDIHDTINDLVADRIRVSVVGLAGQVAICSELCKRTNNHDGNYSVAVDE 220
Query: 237 SHFKELIMEHAPPPPA-IAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCP 293
H KEL PP E A+L+ MGFP R A + +S C+CH + GYTCP
Sbjct: 221 VHLKELFFAATTPPVTRTPEQNTASLLMMGFPSRTLAPKDHVSFCACHAK-PTREGYTCP 279
Query: 294 RCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 335
RC +VC LP DC IC L L+ S HLARSYHHLFP+ F EV
Sbjct: 280 RCGIKVCRLPIDCPICKLTLIQSTHLARSYHHLFPLKVFVEV 321
>gi|401395984|ref|XP_003879726.1| putative general transcription factor IIH polypeptide 2 [Neospora
caninum Liverpool]
gi|325114133|emb|CBZ49691.1| putative general transcription factor IIH polypeptide 2 [Neospora
caninum Liverpool]
Length = 487
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 148/432 (34%), Positives = 205/432 (47%), Gaps = 67/432 (15%)
Query: 10 NGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGF--LRPIDNSAFYHAQYRR 67
NG+A EE+ G AWE +RSW+ L E GF L A + RR
Sbjct: 29 NGDAAAEEDLY------GQYAWE--CEAERSWDQLVESSEGFVLLHGASGGADEGVKTRR 80
Query: 68 RLRD------------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLS 115
R RSLV + E DFRP R++ V + E F+ F QNPL+
Sbjct: 81 ADRRQQLEPQIKKGVIRSLVLLIDMSEAMREKDFRPDRLSCVCQLAEEFIGTFLLQNPLA 140
Query: 116 QIGLVTVKDGVAN------CLTDLGGSPESHIKALMGKLGC------------------- 150
Q+ V + A+ C G SP G +G
Sbjct: 141 QLAQVALIGPSADPIVTSRCGATRGDSPSVPAARSPGSVGTHLFSSNAEECIASLREKRK 200
Query: 151 ------SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 204
+G SL+N L L + LL+ +P Y REVLILY +L TCD G I ETI KE
Sbjct: 201 TTPGVGTGVPSLKNGLRLAKDLLACVPPYCTREVLILYGSLRTCDVGCIEETIADVKEGN 260
Query: 205 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKM 264
I C+VI L+AEM + K LCQ+TGG ++V L H + L+++H PPA + +L++M
Sbjct: 261 ICCNVICLAAEMHVLKKLCQETGGRHAVPLHREHLRSLLVQHT-LPPAWSSSMQPSLVRM 319
Query: 265 GFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYH 324
GFP + ++CSCH+++ Y CP+C A++C++P CR C L LVS ++RS+H
Sbjct: 320 GFPSLKSTSTAALCSCHQQLTFS-AYVCPQCGAKLCDIPNRCRCCFLHLVSPADISRSFH 378
Query: 325 HLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDI 384
L P PFD V + ++ C C L G++ CP C + FC +CD+
Sbjct: 379 SLCPPLPFDPVADI------PEAKRVCACCTTRLERGGSQ------CPDCGEIFCHDCDV 426
Query: 385 YIHESLHNCPGC 396
Y HE L C C
Sbjct: 427 YTHEQLRQCAFC 438
>gi|167376758|ref|XP_001734134.1| TFIIH basal transcription factor complex p44 subunit [Entamoeba
dispar SAW760]
gi|165904499|gb|EDR29715.1| TFIIH basal transcription factor complex p44 subunit, putative
[Entamoeba dispar SAW760]
Length = 362
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 125/389 (32%), Positives = 194/389 (49%), Gaps = 38/389 (9%)
Query: 16 EEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLV 75
E++ ++ +N W +W+ + E F RR R ++
Sbjct: 2 EKKQQEKEINSSFHQW-------INWDRMNE-------------FKQQNRSRRGLQRKVI 41
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
+ D++P+R+ + +++ F EF+ NPLS+IGL+ ++ A
Sbjct: 42 FIIDMSLSMIQEDYQPNRITFIQTKLKEFFEEFYIDNPLSEIGLICTRNKTAE--QQFPL 99
Query: 136 SPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
S I+ M C G SLQ +LDL Q +LS + RE++I+ S+++TCDPG+I +
Sbjct: 100 SRNLIIQKEMKWGNCEGQMSLQISLDLAQQILSNTSNSSSREIIIVTSSITTCDPGNIYD 159
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAE 255
TI+ K++ IRCSVI + EM I K L + TGG Y ++E H + ++ PP
Sbjct: 160 TIETLKKTTIRCSVISFAPEMHITKLLTKITGGDYHTIMNEKHAENVLNTFIIPPIYKEN 219
Query: 256 FAIANLIKM--GFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQL 313
I++ GFP++ +IC CH ++ + + CP C CELP C+IC L
Sbjct: 220 TYEPKTIQLYIGFPKQLNIP--TICECHSKIDIN-HFECPICNFCYCELPIQCKICNAIL 276
Query: 314 VSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNK----PGLYV 369
+ S H ARSYH +FPI PF +T + + + CFGC + + K P
Sbjct: 277 LLSHHFARSYHFMFPIEPFKIITMI-------KPQEKCFGCGKEIDDRIEKKEEEPVNIY 329
Query: 370 ACPKCKKHFCLECDIYIHESLHNCPGCES 398
C KC K++C ECD +IH+ L+NCPGCES
Sbjct: 330 QCKKCLKYYCNECDSFIHDVLYNCPGCES 358
>gi|238610326|ref|XP_002397695.1| hypothetical protein MPER_01834 [Moniliophthora perniciosa FA553]
gi|215472703|gb|EEB98625.1| hypothetical protein MPER_01834 [Moniliophthora perniciosa FA553]
Length = 251
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 166/248 (66%), Gaps = 13/248 (5%)
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL-GGSPESHIKALMG 146
D RP+R +++ + FV E+FDQNPL Q+G+V + + ++ G+P+ ++++
Sbjct: 5 DMRPTRFSLMLQYAREFVLEWFDQNPLGQMGVVVPIEVGSLIYSNFEPGNPQDVLRSISD 64
Query: 147 --KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 204
KL GD SLQNA+D+ + ++ +P++ RE++IL+ +L+T DPG+I ET+ +C ++K
Sbjct: 65 RHKLEPMGDPSLQNAIDMARNSMNHLPTHSSREIVILFGSLTTVDPGNIHETLDECVKNK 124
Query: 205 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP--------AIAEF 256
IR S++ L+AEM IC+ LC TGG + VAL+E HFK+L+ E PPP A +
Sbjct: 125 IRISLVALAAEMRICRDLCIKTGGEFGVALNEGHFKDLLFELIPPPAQRAISKAGAGSTN 184
Query: 257 AIANLIKMGFPQRAGEGS-ISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 315
A ANL+ MGFP R + S S+C CH ++K G+ CPRC A+VC++PTDC ICGL +VS
Sbjct: 185 ASANLMMMGFPTRLPDASPPSLCVCHSDLKSD-GFLCPRCLAKVCDVPTDCDICGLMIVS 243
Query: 316 SPHLARSY 323
SPHLARSY
Sbjct: 244 SPHLARSY 251
>gi|440296353|gb|ELP89180.1| TFIIH basal transcription factor complex p44 subunit, putative
[Entamoeba invadens IP1]
Length = 358
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/386 (32%), Positives = 192/386 (49%), Gaps = 39/386 (10%)
Query: 16 EEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLV 75
+++ ED ++ E+W ++WE E F RR RS++
Sbjct: 2 KKKQEDSQISSTFESW-------KTWERRNE-------------FSADSRSRRGLQRSVL 41
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
DF P+R++ + ++ F FF NPLSQIGLV ++ A+ + L
Sbjct: 42 FVIDMSYPMNYEDFHPTRISFINTKMNNFFDNFFVDNPLSQIGLVATRNSTADIICPLTR 101
Query: 136 SPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
+ + GK C+G S+Q +L+L L RE++ + SA+STCDPG+I E
Sbjct: 102 NISKLKETAWGK--CNGSISVQISLELCLQFLKDTKDMTSREIVFVTSAISTCDPGNIFE 159
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP--PAI 253
TI K +++ IR SVI +SAE+ + + + + TGG Y ++E H +E+I PP A
Sbjct: 160 TIGKVRDNLIRVSVISISAEVHVMRQMTKVTGGDYFTIMNEKHAEEVIKTFIEPPRYKAT 219
Query: 254 AEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG-YTCPRCKARVCELPTDCRICGLQ 312
+ L+ +GFP+ +IC CH K+G+G Y CP C CELP +C++C
Sbjct: 220 GKEPKVELLFVGFPRELERS--TICECHS--KIGLGHYECPVCGFCYCELPVECKVCKAN 275
Query: 313 LVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACP 372
L+ S H ARS+H LFP+ PF + CF C + ++ + C
Sbjct: 276 LIFSHHFARSFHFLFPVKPF----------VLEKEPEVCFACGKKYEEKKDEEMKFWKCE 325
Query: 373 KCKKHFCLECDIYIHESLHNCPGCES 398
KC K FC C+I+IH+ L NCPGCE+
Sbjct: 326 KCSKSFCETCNIFIHDVLFNCPGCEN 351
>gi|402076515|gb|EJT71938.1| hypothetical protein GGTG_11190 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 540
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 134/338 (39%), Positives = 180/338 (53%), Gaps = 45/338 (13%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRR-LRD---------RSLVATTARIQKAAEMD 88
RSW+ +E G L A+ RRR LRD R LV E D
Sbjct: 65 RSWDVAEELAEGGL---SLEGRIEAEKRRRVLRDTTPIQRGIIRHLVLVLDMSLAMDEKD 121
Query: 89 FRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MG 146
PSR V F REFFDQNP+SQ+ +V ++DGVA ++D G+P HI+ L +
Sbjct: 122 MLPSRHRVAIAYAVDFAREFFDQNPISQLAIVGMRDGVAVRISDTSGNPADHIEKLRQLV 181
Query: 147 KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIR 206
+L G+ SLQNAL++ +G L PS+G REV++++ ALS+ DPGDI ETI +IR
Sbjct: 182 ELPPMGNPSLQNALEMCRGALFNTPSHGTREVVMIFGALSSSDPGDIHETIDGLVTDRIR 241
Query: 207 CSVIGLSAEMFICKHLC-----------------QDTGGSYSVALDESHFKELIMEHAPP 249
S+IGLSA++FIC+ LC +D Y VA+D+ HF+EL++ P
Sbjct: 242 VSIIGLSAQVFICEDLCRRTNAGHSASEPVLVGGEDESSGYMVAMDDVHFRELLLSVTRP 301
Query: 250 PPA------------IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKA 297
P A A+L+ MGFP R ++C+CH G+ C RC +
Sbjct: 302 PATRQSQLQQQGAAAGGGEAGASLLMMGFPSRTTGTDPALCACHNR-PTRDGFLCTRCGS 360
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 335
RVC LP +C CGL L+ S HLARSYHHLFP+ + EV
Sbjct: 361 RVCRLPAECPACGLTLILSTHLARSYHHLFPLRIWVEV 398
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
Query: 366 GLYVACPKCKKHFCLECDIYIHESLHNCPGCE 397
G Y+ C C+KHFC++CD++ HE +HNCPGC+
Sbjct: 486 GRYM-CQVCRKHFCIDCDVFAHEVVHNCPGCQ 516
>gi|189195190|ref|XP_001933933.1| TFIIH basal transcription factor complex p44 subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187979812|gb|EDU46438.1| TFIIH basal transcription factor complex p44 subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 460
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 115/302 (38%), Positives = 168/302 (55%), Gaps = 30/302 (9%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM 145
E D RP+R + + +VREFF+QNP+SQ+ ++ + DGV +++L G+P H+ A+
Sbjct: 116 EKDMRPNRFITMINFTQEYVREFFEQNPISQMSVLGMHDGVCIRVSELSGNPAEHVAAIQ 175
Query: 146 GKLGC------SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
G G SLQNAL+L + L PS+G REV++++ +L + DPGDI +T++
Sbjct: 176 GIRSKDDGKEPKGAPSLQNALELARATLYHTPSHGTREVIVVFGSLLSLDPGDIHQTVKA 235
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPPPAIAE 255
C +IR SVIG+SA + IC + T Y++A D+ KEL++ PP
Sbjct: 236 CVRDRIRVSVIGMSARLKICTEIVTRTNAGDESEYTIATDQEMLKELLLATTTPPVIRQS 295
Query: 256 FAIAN------------LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 303
+A L+ MGFP R E +++C+CH + +G GYTC RC A+VC LP
Sbjct: 296 APVATTTAAPSPESAAALMMMGFPSRVVEDQLTMCACHGNLTMG-GYTCSRCSAKVCSLP 354
Query: 304 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGN 363
C C L L+ S HLARSYHHLFP+ + V+ + R + C GC LSS +
Sbjct: 355 ITCPSCQLTLLLSTHLARSYHHLFPLRNWATVS---WSRAREKGSKECVGC----LSSFS 407
Query: 364 KP 365
KP
Sbjct: 408 KP 409
>gi|330925787|ref|XP_003301194.1| hypothetical protein PTT_12637 [Pyrenophora teres f. teres 0-1]
gi|311324299|gb|EFQ90721.1| hypothetical protein PTT_12637 [Pyrenophora teres f. teres 0-1]
Length = 462
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/302 (38%), Positives = 169/302 (55%), Gaps = 30/302 (9%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM 145
E D RP+R + + +VREFF+QNP+SQ+ ++ + DGV +++L G+P H+ A+
Sbjct: 116 EKDMRPNRFITMINFTQEYVREFFEQNPISQMSVLGMHDGVCIRVSELSGNPAEHVAAIQ 175
Query: 146 GKLGC------SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
G G SLQNAL+L + L PS+G REV++++ +L + DPGDI +T++
Sbjct: 176 GLRSKDDGKEPKGAPSLQNALELARATLYHTPSHGTREVIVVFGSLLSLDPGDIHQTVKA 235
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPP----- 250
C +IR SVIG+SA + IC + T Y++A D+ KEL++ PP
Sbjct: 236 CVRDRIRVSVIGMSARLKICTEIVTRTNAGDESEYTIATDQEMLKELLLATTTPPVIRQS 295
Query: 251 -PAIAEFAI------ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP 303
PA A+ A L+ MGFP R E +++C+CH + +G GYTC RC +VC LP
Sbjct: 296 APAATTPAVPPPESAAALMMMGFPSRVVEDQLTMCACHGNLTMG-GYTCSRCSTKVCSLP 354
Query: 304 TDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGN 363
C C L L+ S HLARSYHHLFP+ + V+ + R + C GC L S +
Sbjct: 355 ITCPSCQLTLLLSTHLARSYHHLFPLRNWATVS---WSRAREKGSKECVGC----LVSFS 407
Query: 364 KP 365
KP
Sbjct: 408 KP 409
>gi|67479545|ref|XP_655154.1| TFIIH basal transcription factor complex subunit [Entamoeba
histolytica HM-1:IMSS]
gi|56472271|gb|EAL49768.1| TFIIH basal transcription factor complex subunit, putative
[Entamoeba histolytica HM-1:IMSS]
gi|449704914|gb|EMD45073.1| TFIIH basal transcription factor complex p44 subunit, putative
[Entamoeba histolytica KU27]
Length = 363
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 123/390 (31%), Positives = 195/390 (50%), Gaps = 40/390 (10%)
Query: 16 EEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLV 75
E++ ++ +N W +W+ + E F RR R ++
Sbjct: 2 EKKQQEKEINYSFHQW-------LNWDRMNE-------------FKQQNRSRRGLQRKVI 41
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
+ D++P+R+ + +++ F EF+ NPLS+IGL+ ++ A
Sbjct: 42 FIIDMSLSMNQEDYQPNRITFIQTKLKEFFEEFYIDNPLSEIGLICTRNKTAE--QQFPL 99
Query: 136 SPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIME 195
S I+ M C G SLQ +LDL Q +LS + RE++I+ S+++TCDPG+I +
Sbjct: 100 SRNLIIQKEMKWGNCEGQMSLQISLDLAQQILSTTSNSSSREIIIVTSSITTCDPGNIYD 159
Query: 196 TIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAE 255
TI+ K++ IRCSVI + EM I + L + TGG Y ++E H ++++ PP
Sbjct: 160 TIETLKKTTIRCSVISFAPEMHITRLLTKVTGGDYHTIMNEKHAEDVLHTFIIPPIYKEN 219
Query: 256 FAIANLIKM--GFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQL 313
I++ GFP++ +IC CH ++ + + CP C CELP C+IC L
Sbjct: 220 AYEPKTIQLYIGFPKQLNVP--TICECHSKIDIN-HFECPICGFCYCELPIQCKICNAIL 276
Query: 314 VSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP-----GLY 368
+ S H ARSYH +FPI PF + + + + CFGC + + K +Y
Sbjct: 277 LLSHHFARSYHFMFPIEPFKVIAMI-------KPQEKCFGCGKEIDDRIEKKEEETVNVY 329
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGCES 398
C KC K++C ECD +IH+ L+NCPGCES
Sbjct: 330 -QCKKCLKYYCDECDSFIHDVLYNCPGCES 358
>gi|299751185|ref|XP_001830111.2| RNA polymerase II transcription factor [Coprinopsis cinerea
okayama7#130]
gi|298409259|gb|EAU91776.2| RNA polymerase II transcription factor [Coprinopsis cinerea
okayama7#130]
Length = 430
Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 190/354 (53%), Gaps = 60/354 (16%)
Query: 30 AWERSYADDRSWEALQEDESGFLRP---------IDNSAFYHAQYRRRLRDRSLVATTAR 80
WE SY RSW+ +QEDE+G L+ A RR R L+
Sbjct: 58 TWEASYT--RSWDTVQEDEAGSLQTSVEELMARGRRRRLLAPAAPIRRTIIRHLIIILDL 115
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG-----G 135
Q + D RP+R + + F+ E+FDQNPL QIG+V ++ G+A+ G
Sbjct: 116 SQSMMDRDMRPTRFDLTLQYTREFIAEWFDQNPLGQIGIVGMRAGLASTFVKFTECRRIG 175
Query: 136 SPESHIKALMG--KLGCSGDSSLQNALDLV---------QGLLSQIPSYGHREVLILYSA 184
+P+ ++A+ KL +G+ SLQNA+++ + + S +P++ RE+LIL+ +
Sbjct: 176 NPQEVLRAIADRHKLEPTGEPSLQNAIEMARSNMNNIANESVSSHLPTHSSREILILFGS 235
Query: 185 LSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG------GSYSVALDESH 238
L+TCDPG+I +T++ C ++KIR SV+ L+AEM IC+ LC TG G + VA++E H
Sbjct: 236 LTTCDPGNIHDTLETCIKNKIRISVVALAAEMKICRELCDKTGDYIPKEGQFGVAMNEGH 295
Query: 239 FKELIMEHAPPP-------PAIAEFA--------IANLIKMGFPQRAGEGS-ISICSCHK 282
+K+L+ E PPP PA A A+L+ MGFP R E S ++C CH
Sbjct: 296 YKDLLFELVPPPAQKAAPRPAGPGSAPQPPSTNPAADLMMMGFPTRLPESSQPTLCVCHS 355
Query: 283 EVKVGVGYTCPRCKARVCELPTDCRICGLQLV----------SSPHLARSYHHL 326
E+K G+ CPRC+++VC++PTDC +CGL + S P L + HL
Sbjct: 356 ELK-SQGFLCPRCQSKVCDVPTDCDVCGLMITIIAGDNEHCSSMPRLLTPFPHL 408
>gi|407044792|gb|EKE42827.1| TFIIH basal transcription factor complex subunit, putative
[Entamoeba nuttalli P19]
Length = 363
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/348 (33%), Positives = 183/348 (52%), Gaps = 20/348 (5%)
Query: 58 SAFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 117
+ F RR R ++ + D++P+R+ + +++ F EF+ NPLS+I
Sbjct: 24 NEFKQQNRSRRGLQRKVIFIIDMSLSMNQEDYQPNRITFIQTKLKEFFEEFYIDNPLSEI 83
Query: 118 GLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHRE 177
GL+ ++ A S I+ M C G SLQ +LDL Q +LS + RE
Sbjct: 84 GLICTRNKTAE--QQFPLSRNLIIQKEMKWGNCEGQMSLQISLDLAQQILSTTSNSSSRE 141
Query: 178 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDES 237
++I+ S+++TCDPG+I +TI+ K++ IRCSVI + EM I + L + TGG Y ++E
Sbjct: 142 IIIVTSSITTCDPGNIYDTIETLKKTTIRCSVISFAPEMHITRLLTKVTGGDYHTIMNEK 201
Query: 238 HFKELIMEHAPPPPAIAEFAIANLIKM--GFPQRAGEGSISICSCHKEVKVGVGYTCPRC 295
H ++++ PP I++ GFP++ +IC CH ++ + + CP C
Sbjct: 202 HAEDVLHTFIIPPIYKENAYEPKTIQLYIGFPKQLNVP--TICECHSKIDIN-HFECPIC 258
Query: 296 KARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQ 355
CELP C+IC L+ S H ARSYH +FPI PF + + + + CFGC
Sbjct: 259 GFCYCELPIQCKICNAILLLSHHFARSYHFMFPIEPFKVIAMI-------KPQEKCFGCG 311
Query: 356 QSLLSSGNKP-----GLYVACPKCKKHFCLECDIYIHESLHNCPGCES 398
+ + K +Y C KC K++C ECD +IH+ L+NCPGCES
Sbjct: 312 KEIDDRMEKKEEETVNVY-QCKKCLKYYCNECDSFIHDVLYNCPGCES 358
>gi|170585402|ref|XP_001897473.1| TFIIH basal transcription factor complex p44 subunit [Brugia
malayi]
gi|158595152|gb|EDP33725.1| TFIIH basal transcription factor complex p44 subunit, putative
[Brugia malayi]
Length = 361
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 186/333 (55%), Gaps = 19/333 (5%)
Query: 19 DEDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVAT 77
++DD G WE YAD + + L+EDESG + A+ ++RL +R
Sbjct: 2 NDDDEPEG--YTWEVDYADGLNIRDVLREDESGSIEKSVAKLILDAKRKKRLNNRPAKVR 59
Query: 78 TARIQ----------KAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVA 127
++ A+ +PSR+AV K + F+ +F +QNP+SQ+G+V +D A
Sbjct: 60 LGIMRYVYLVIDCSFSMADKSIQPSRLAVTIKALNQFLDKFSEQNPISQVGVVVCRDKRA 119
Query: 128 NCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSAL 185
L L G+ ++L + +L C G+ SL N+L L P + REV+++ ++L
Sbjct: 120 ERLIPLTGNVRLVKESLSTITELLCHGEFSLHNSLMATIRSLHSYPGHASREVILIVASL 179
Query: 186 STCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIME 245
STCDP I T + K IRCSV+ LSAE+F+ K LC T G + V LD SHF+ ++ E
Sbjct: 180 STCDPSSIFGTFELLKRYHIRCSVVSLSAEIFVFKKLCSITSGRHDVILDSSHFEVILSE 239
Query: 246 HAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHK-EVKV--GVGYTCPRCKARVCEL 302
HA PP + A +++++MGFP S C CH+ EV+ G G+ CP+C AR C L
Sbjct: 240 HA-IPPVCSRNAESSVVRMGFPAHESIDCPSFCLCHQSEVRPSGGRGFFCPQCGARYCSL 298
Query: 303 PTDCRICGLQLVSSPHLARSYHHLFPIAPFDEV 335
P +CRIC L L+S+P LARS ++L P+ F+E+
Sbjct: 299 PVECRICKLTLISAPQLARSLYNLLPLPAFEEI 331
>gi|237841927|ref|XP_002370261.1| general transcription factor IIH polypeptide 2, putative
[Toxoplasma gondii ME49]
gi|211967925|gb|EEB03121.1| general transcription factor IIH polypeptide 2, putative
[Toxoplasma gondii ME49]
gi|221503074|gb|EEE28780.1| btf, putative [Toxoplasma gondii VEG]
Length = 627
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 144/430 (33%), Positives = 198/430 (46%), Gaps = 59/430 (13%)
Query: 7 KRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFL-------------R 53
+ L G + +ED G AWE +RSW+ L E GF+ R
Sbjct: 173 QELEGNGTDAAAEEDLY---GQYAWE--CEAERSWDQLIESSEGFVLLHGGAAEEGVKTR 227
Query: 54 PIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNP 113
ID + Q ++ + RSLV + E DFRP R+ V + E F+ F QNP
Sbjct: 228 RIDRRQQHEPQIKKGI-IRSLVLLIDMSEAMREKDFRPDRLRCVCQLAEEFIGTFLLQNP 286
Query: 114 LSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC----------------------- 150
L+Q+ V + A L G + G
Sbjct: 287 LAQLAQVALIGPSAEPLAARGEAARDSAAVSARPSGSASMQLFSSSASESIAALREKRKH 346
Query: 151 ----SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIR 206
+G SL N L L + LL+ +P Y REVL+L+ +L TCD G I ETI K+S I
Sbjct: 347 PGVGTGVPSLNNGLHLAKDLLAGVPPYCTREVLVLFGSLRTCDVGCIEETIAAVKKSNIC 406
Query: 207 CSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGF 266
C+VI L+AE+ + K+LCQ TGG + V L H + L+M+H PP A LI+MGF
Sbjct: 407 CNVICLAAELHVLKNLCQATGGRHDVPLHREHLRALLMQHTLPPAWSASMQPC-LIRMGF 465
Query: 267 PQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 326
P + ++CSCH+ + Y CP+C A++C P CR C L LVS ++RS+H L
Sbjct: 466 PSLKSTSTAALCSCHQHLTFS-SYVCPQCGAKLCTTPNRCRCCFLHLVSPADISRSFHSL 524
Query: 327 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYI 386
P PFD P+ + P ++ C C L G + CP C + FC +CDIY
Sbjct: 525 CPPLPFD---PVPADAP--EAKRLCACCTTQLDRGGAQ------CPDCGEIFCHDCDIYS 573
Query: 387 HESLHNCPGC 396
HE L C C
Sbjct: 574 HEQLRQCAFC 583
>gi|221482733|gb|EEE21071.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 627
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 143/430 (33%), Positives = 198/430 (46%), Gaps = 59/430 (13%)
Query: 7 KRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFL-------------R 53
+ L G + +ED G AWE +RSW+ L E GF+ R
Sbjct: 173 QELEGNGTDAAAEEDLY---GQYAWE--CEAERSWDQLIESSEGFVLLHGGAAEEGVKTR 227
Query: 54 PIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNP 113
+D + Q ++ + RSLV + E DFRP R+ V + E F+ F QNP
Sbjct: 228 RVDRRQQHEPQIKKGI-IRSLVLLIDMSEAMREKDFRPDRLRCVCQLAEEFIGTFLLQNP 286
Query: 114 LSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC----------------------- 150
L+Q+ V + A L G + G
Sbjct: 287 LAQLAQVALIGPSAEPLAARGEAARDSAAVSARPSGSASMQLFSSSASESIAALREKRKH 346
Query: 151 ----SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIR 206
+G SL N L L + LL+ +P Y REVL+L+ +L TCD G I ETI K+S I
Sbjct: 347 PGVGTGVPSLNNGLHLAKDLLAGVPPYCTREVLVLFGSLRTCDVGCIEETIAAVKKSNIC 406
Query: 207 CSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGF 266
C+VI L+AE+ + K+LCQ TGG + V L H + L+M+H PP A LI+MGF
Sbjct: 407 CNVICLAAELHVLKNLCQATGGRHDVPLHREHLRALLMQHTLPPAWSASMQPC-LIRMGF 465
Query: 267 PQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 326
P + ++CSCH+ + Y CP+C A++C P CR C L LVS ++RS+H L
Sbjct: 466 PSLKSTSTAALCSCHQHLTFS-SYVCPQCGAKLCTTPNRCRCCFLHLVSPADISRSFHSL 524
Query: 327 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYI 386
P PFD P+ + P ++ C C L G + CP C + FC +CDIY
Sbjct: 525 CPPLPFD---PVPADAP--EAKRLCACCTTQLDRGGAQ------CPDCGEIFCHDCDIYS 573
Query: 387 HESLHNCPGC 396
HE L C C
Sbjct: 574 HEQLRQCAFC 583
>gi|300123288|emb|CBK24561.2| unnamed protein product [Blastocystis hominis]
Length = 626
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 174/320 (54%), Gaps = 26/320 (8%)
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 147
D +PSR+ VV Q++ F+R+FF N LS + ++ D A LT L + H+ AL K
Sbjct: 5 DLKPSRLEVVVSQLKQFIRDFFYHNSLSSLCIIVSHDRRAFQLTPLSRHMKEHLNAL-DK 63
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 207
L CSG SLQ +LD+ + PS +E++ L S++STCDP DI +TI +E I+C
Sbjct: 64 LTCSGKFSLQLSLDIAIKTMELAPSQFAKEIICLISSISTCDPRDIYKTISIIQEKHIQC 123
Query: 208 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPP----PAI-------AEF 256
SV+ LS E+++ + L Q T G ++V D +H PP P + A
Sbjct: 124 SVMSLSGEVYLFQKLAQITSGIFAVPEDPQQVHHFFSQHISPPINSDPIVLVKREDGATV 183
Query: 257 AIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSS 316
+ +MGFP IC+CH Y CPRC++ VCELP C +C L LV
Sbjct: 184 THREICEMGFPNNVQLS--HICACHVRF-CSKFYECPRCRSYVCELPVRCPVCMLMLVDY 240
Query: 317 PHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKK 376
HL +SYHHLFP F+E ND ++ TC+GC S++ G + + CPKC K
Sbjct: 241 THLTQSYHHLFPPKNFEEC-----ND--HKPGITCYGC-CSVIKEGE---ICLQCPKCMK 289
Query: 377 HFCLECDIYIHESLHNCPGC 396
+FC CD ++H+++ +CPGC
Sbjct: 290 YFCQTCDAFVHDNIFHCPGC 309
>gi|71027729|ref|XP_763508.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350461|gb|EAN31225.1| hypothetical protein, conserved [Theileria parva]
Length = 447
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 209/449 (46%), Gaps = 88/449 (19%)
Query: 15 EEEEDEDDNLNGGLEAWERSYAD---DRSWEALQEDES--GFLRPIDNSAFYH---AQYR 66
E E++ + N N EA+++ + D+SWE L E + F++P + Y +Y+
Sbjct: 16 EYEQNTEINNNTEDEAYQQYAWELDVDKSWEQLVEKDGVLQFIKP--QTRLYQEFDLEYQ 73
Query: 67 RRLRD------------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPL 114
L+ RS++ ++ EMDF+P R+ ++ F+ E + P+
Sbjct: 74 NNLKQHNLNLIYKRGIIRSIMILFDMSEQMHEMDFKPDRLYCAFNSLKEFLGELYSSGPI 133
Query: 115 SQIGLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPS 172
+Q+G+V +++ + N +T G +P ++ L L G G SSLQN L++ ++ +P
Sbjct: 134 TQVGIVVMRNKICNVITQFGTNPNEQMELLSSVLKDGPEGSSSLQNGLEMCMKIMCDLPY 193
Query: 173 YGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICK------------ 220
Y RE+L+++ + T DPG+I+ T+ + K++ I + I LS E++I K
Sbjct: 194 YSTREILVIFGSNRTLDPGNILLTLDQLKQNFITVNSISLSPELYILKVALLRYGVRSNG 253
Query: 221 ---------------------------------HLCQDTGGSYSVALDESHFKELIMEHA 247
++C++TGG+YSVA D +H K L
Sbjct: 254 TSYLLVILPQSYPPQWDSLWPLWLLVPHIYTSYNICKETGGNYSVARDVNHLKLLFNNLT 313
Query: 248 PPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCR 307
PPP + LIK+ FP S+S+C CH +V V Y CP+C + C +PT C+
Sbjct: 314 IPPPW-KSWMEPILIKVSFPPMKRGTSVSLCCCHNKV-VNTVYICPQCHSNSCYIPTKCQ 371
Query: 308 ICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGL 367
CG+ +VS P ++R++HHL P PF V C GC + S
Sbjct: 372 GCGIFMVSPPDISRAFHHLIPPKPFHHV----------EGGMDCVGCNLRVESG------ 415
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGC 396
C C FC CD YIH+ LH CP C
Sbjct: 416 -YECQDCGGLFCQHCDKYIHQDLHQCPKC 443
>gi|312076202|ref|XP_003140756.1| general transcription factor IIH subunit 2 [Loa loa]
Length = 1131
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 149/252 (59%), Gaps = 19/252 (7%)
Query: 150 CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSV 209
C G+ SL N+L L P Y REV+++ ++LSTCDP +I T + K IRCSV
Sbjct: 95 CHGEFSLHNSLMAAIKSLHSYPGYASREVILIVASLSTCDPSNIFGTFELLKRYHIRCSV 154
Query: 210 IGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQR 269
I LSAE+FI + LC T G ++V LD +HF+ ++ EHA PP + + A +++++MGFP
Sbjct: 155 ISLSAEVFIFRKLCSATSGCHNVILDSTHFEVILNEHANPPIS-SRNAESSVVRMGFPAH 213
Query: 270 AGEGSISICSCHK-EVKV--GVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 326
S S C CH+ E++ G G+ CP+C AR C LP +CRIC L L+S+P LARS H+L
Sbjct: 214 ESIDSPSFCLCHQSEIRPSGGRGFFCPQCGARYCSLPVECRICKLTLISAPQLARSLHNL 273
Query: 327 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYI 386
P+ F+E+ + + CF C + L C CK FC++CD+ +
Sbjct: 274 LPLPAFEEI---------DTTERVCFACIRQLDDKS------FVCKNCKSTFCIDCDVLL 318
Query: 387 HESLHNCPGCES 398
HESL CPGC+S
Sbjct: 319 HESLQICPGCKS 330
>gi|349604001|gb|AEP99672.1| General transcription factor IIH subunit 2-like protein, partial
[Equus caballus]
Length = 274
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 148/249 (59%), Gaps = 14/249 (5%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIITKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMGKLG--CSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP DI IQ
Sbjct: 129 TSLKKAVAMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSDIYGLIQT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSN-SEC 247
Query: 260 NLIKMGFPQ 268
+LI+MGFPQ
Sbjct: 248 SLIRMGFPQ 256
>gi|156083725|ref|XP_001609346.1| transcriptional factor 2 subunit [Babesia bovis T2Bo]
gi|154796597|gb|EDO05778.1| transcriptional factor 2 subunit [Babesia bovis]
Length = 364
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 173/324 (53%), Gaps = 22/324 (6%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYH---------------AQYRRRLRDRSL 74
AWE+ + D+SWE L D+ G L+ + + + ++R R++
Sbjct: 38 AWEKDF--DKSWEQLV-DKDGVLQFVQQKDVSNTDVTSDGTVALSEADSSIQKRGVVRNI 94
Query: 75 VATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
V E+DF+P R+ A V+ ++ F Q P++Q+ ++T+++ + ++ LG
Sbjct: 95 VIMFDTSDGMREVDFKPDRLHCAAGAVKGLIQGLFHQGPMTQLAIITMRNKRSTMVSKLG 154
Query: 135 GSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
P HI L K+ G G SLQN L++ +L+ +P Y RE+L+++ A T DPG+
Sbjct: 155 TPPSEHIALLDEKIKEGTDGVPSLQNGLEMAISILTDMPPYTTREILVIFGATKTFDPGN 214
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
I+ T+QK K+ + S + ++ EM+I KH+C +TGGSY+V D H K L+ +H PP
Sbjct: 215 ILTTLQKLKDEHVSVSAVSIAPEMYILKHICTETGGSYAVCKDSVHLKSLLNDHT-MPPK 273
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQ 312
+ L K+GFP + S+C CH + Y CP+C ++ C +PT C+ C L
Sbjct: 274 WRPWMEPVLTKVGFPPLEKANTASLCICHSTLTYK-AYICPQCHSKSCAIPTKCKCCRLY 332
Query: 313 LVSSPHLARSYHHLFPIAPFDEVT 336
LVS P ++R +H L P PF V+
Sbjct: 333 LVSPPDISRMFHQLIPPKPFINVS 356
>gi|403367585|gb|EJY83616.1| P44/SSL1-like protein [Oxytricha trifallax]
Length = 499
Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 175/321 (54%), Gaps = 17/321 (5%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQ-----YRRRLRDRSLVATTARI--- 81
AWE+ + W+ L+E + + S H + + + ++ +SL+ +
Sbjct: 8 AWEKDIS--ARWKTLKEADISEFYESEQSQKLHKKEAIDKFNQSIKRKSLIRYLTVVIDF 65
Query: 82 -QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
A + + RP+R V+ + FV ++FDQNPLS + V A L+D SP+ H
Sbjct: 66 SSAAKKQEMRPNRAIVIKSYLSNFVIDYFDQNPLSCLSFVATFRERAIILSDFNDSPQDH 125
Query: 141 IKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKC 200
I+ + G++S+QN+L+L + +PSY +E+LI++ +++ CDPG+I ET K
Sbjct: 126 IEKICRFSDLEGNASIQNSLELCIENFTAVPSYAKKEILIIFCSITNCDPGNIFETYDKL 185
Query: 201 KESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA--- 257
K I CSVI LSA MFI + + Q TGG + ++ D++HF++L+ P +I +
Sbjct: 186 KSKMITCSVISLSASMFILQKVTQLTGGEFFLSKDQAHFQDLLKRLLVPKESIEDLTQRK 245
Query: 258 --IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 315
LIKMGFP R ++CSCH +++ V Y CP C++ CEL + C++C + LVS
Sbjct: 246 QQQNTLIKMGFPMRKILSYPAVCSCHNDLRFLV-YICPNCQSPSCELSSFCKVCQIMLVS 304
Query: 316 SPHLARSYHHLFPIAPFDEVT 336
+ HL+R+ H +A F +T
Sbjct: 305 AAHLSRTAQHNQNLANFQRLT 325
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 324 HHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECD 383
+ +FP+ V + D + C GC + + +S + + V C CKK +CL+CD
Sbjct: 427 NEIFPLNSMKTVGSILQKDGHSY---YCNGCSKRVEASFDNVDI-VICTICKKFYCLDCD 482
Query: 384 IYIHESLHNCPGCESLR 400
I+IHE+L +CP C+ ++
Sbjct: 483 IFIHETLLSCPTCQLIQ 499
>gi|90082659|dbj|BAE90511.1| unnamed protein product [Macaca fascicularis]
Length = 237
Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 155/238 (65%), Gaps = 22/238 (9%)
Query: 170 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 229
+P + REVLI++S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L ++TGG+
Sbjct: 1 MPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGT 60
Query: 230 YSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRA--------GEGSISICSCH 281
Y V LDESH+KEL+ H PPPA + +LI+MGFPQ + S S+
Sbjct: 61 YHVILDESHYKELLTHHVSPPPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFSMAHLD 119
Query: 282 KEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPL 338
+ G+ GY CP+C+A+ CELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL
Sbjct: 120 GNTEPGLTLGGYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL 178
Query: 339 CLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+ N R C+GCQ L +YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 179 ---EEYNGER-FCYGCQGEL----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 227
>gi|170035934|ref|XP_001845821.1| btf [Culex quinquefasciatus]
gi|167878420|gb|EDS41803.1| btf [Culex quinquefasciatus]
Length = 367
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/286 (37%), Positives = 162/286 (56%), Gaps = 24/286 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +++WEA++ED+ G + A+ +R+ R L
Sbjct: 12 WETGY--EKTWEAIKEDDDGLVEGSIAEIIQKAKRKRQAMKKGFSKLGMMRHLYVILDCS 69
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E F+ EFFDQNP+SQ+G++ +K A +T+LGGS HI
Sbjct: 70 EAMSVPDLKPTRLLCTLKLLEIFIEEFFDQNPISQLGVIAMKAKRAEKITELGGSCRKHI 129
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
KA+ + KL +G+ SLQN L+L L +PS+ RE+L++ +L+TCDP DI TI
Sbjct: 130 KAVGNLNKLNLTGEPSLQNGLELALKTLKMVPSHASREILVVMGSLTTCDPTDIHITIDA 189
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K IRCSV+ LSAE+ +CK LC +TGG Y LD+SHFK+ +++H PP A + +
Sbjct: 190 LKSEGIRCSVVSLSAEIRVCKFLCTETGGVYGAVLDDSHFKDQLLQHIDPPQAGNQQEFS 249
Query: 260 NLIKMGFPQ-RAGEGS---ISICSCHKEVK------VGVGYTCPRC 295
+IKMGFP + EG +++C CH + GY CP+C
Sbjct: 250 -MIKMGFPHGKTEEGKDPPLTMCMCHIDSTDEPSKLTSGGYHCPQC 294
>gi|344303241|gb|EGW33515.1| hypothetical protein SPAPADRAFT_60859 [Spathaspora passalidarum
NRRL Y-27907]
Length = 346
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/349 (36%), Positives = 175/349 (50%), Gaps = 77/349 (22%)
Query: 122 VKDGVANCLTDLGGSPESHIKALM-------GKLGCSGDSSLQNALDLVQGLL------S 168
+++GVAN ++++ GSP+ H+ + K GD SLQN+L++ + LL +
Sbjct: 1 MRNGVANLVSEVSGSPQYHLDKIRQLKARQHNKFEPKGDPSLQNSLEMARSLLKYNFGSN 60
Query: 169 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG- 227
+ +E+L+++ AL T DPGDI +TI + I+ VIGLSA++ IC+ L T
Sbjct: 61 ANNTKNSKEILVIFGALFTSDPGDIHKTIGNLVKDDIKVKVIGLSAQVAICQELVNRTNR 120
Query: 228 -------GSYSVALDESHFKELIMEHAPPPPAI---AEFAIAN----LIKMGFP---QRA 270
+Y V ++ESHFKEL+M+ P P EF +N +IKMGFP Q
Sbjct: 121 EEKNTSSKNYGVIMNESHFKELLMDCVTPLPLTEQEKEFEESNHGVPVIKMGFPTKIQPT 180
Query: 271 GEGSISICSCHKE------------------------------VKVGVGYTCPRCKARVC 300
G SI E V VGY CP+CK++VC
Sbjct: 181 GNSSIGNTDFTIEFPQLNASFPTAGSDDSSDVVQINHNMGATTTGVAVGYQCPQCKSKVC 240
Query: 301 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-- 358
LPT C +CGL L+ S HLARSYHHL P+ P+ EV P+ CFGCQ
Sbjct: 241 NLPTICPVCGLMLILSTHLARSYHHLVPLRPYKEV-PIS----STYESQFCFGCQLQFPK 295
Query: 359 ---LSSGNKPGL------YVACPKCKKHFCLECDIYIHESLHNCPGCES 398
+S +K L C KC K FC+ CD+++HE LHNCPGCE+
Sbjct: 296 GVRTTSKSKGKLESMTSSRYRCMKCSKDFCINCDVFVHEVLHNCPGCEN 344
>gi|118377110|ref|XP_001021737.1| transcription factor ssl1 family protein [Tetrahymena thermophila]
gi|89303503|gb|EAS01491.1| transcription factor ssl1 family protein [Tetrahymena thermophila
SB210]
Length = 372
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 18/377 (4%)
Query: 29 EAWERSYADDRSWEALQEDESGFL--RPIDNSAFYHAQYRRRLRDRSLVATTARIQKAAE 86
EA RS D + ++E+ + + I + + + LR ++ T Q +
Sbjct: 5 EADRRSIIDFVEQKLNIKEENPLIQTKKIIDKGYTSTTKKSLLRFVYIIVDTT--QSSTR 62
Query: 87 MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG 146
+DF+PSR+ + ++ F++ FFD NPLS + + ++G L + S S + +
Sbjct: 63 VDFKPSRIGLTQIYLKNFIKNFFDSNPLSVLSIGKTQNGQCITLQEFTSSI-SLLDKTIE 121
Query: 147 KLGC--SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 204
KL D SL L+ + ++ P Y REV+++ S ST D GDI E I K K+ K
Sbjct: 122 KLVVDEKEDFSLFECLNETFNIFAEAPPYAFREVVLIQSTPSTKDKGDINEQINKAKQCK 181
Query: 205 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKM 264
I ++I L+A+ FI + L ++T G Y AL E ++ L+ + PP I LI++
Sbjct: 182 ITFNIISLNAKTFIFQKLTKETQGKYDTALHEKDYENLLNSYCEPPQQILNKTEKTLIQV 241
Query: 265 GFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYH 324
GFP + +C+CH E+K Y CP+CK++ CE+P+ C C L L+ H+ +SYH
Sbjct: 242 GFPNKKYSKISVLCACHMELKTNF-YICPQCKSKNCEVPSKCSGCQLNLILPLHITKSYH 300
Query: 325 HLFPIAPFD----EVTPLCLNDPRNRSRST-CFGCQQSLLSSGNKPGLYVACPKCKKHFC 379
+ F+ E + + ++++++ C GC + + K + C CK FC
Sbjct: 301 FSQNLKEFELLGQEKSNNSMETEQDKTQNILCNGCSEDI-----KEDYFSKCQNCKSIFC 355
Query: 380 LECDIYIHESLHNCPGC 396
LECDI IH+ NCP C
Sbjct: 356 LECDILIHKQKLNCPKC 372
>gi|348569006|ref|XP_003470289.1| PREDICTED: hypothetical protein LOC100720431 [Cavia porcellus]
Length = 637
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 170/312 (54%), Gaps = 49/312 (15%)
Query: 98 AKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSS 155
A+ +E FV E+FDQNP+SQ+ ++ K A LT+L G P+ HI +L + C G+ S
Sbjct: 352 AQLLEYFVEEYFDQNPISQVCIIVTKSKRAEKLTELSGMPQKHITSLKKAIDMTCHGEPS 411
Query: 156 LQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE 215
L N+L + L+ D+M+T+ K +KIR SVIGL AE
Sbjct: 412 LYNSLSMAMQTLNL----------------------DLMKTL---KTAKIRVSVIGLWAE 446
Query: 216 MFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRA----- 270
+ +C L ++TGG+Y LDESH+KEL+ H PP + + +LI MGFPQ
Sbjct: 447 VRVCAALARETGGTYHEILDESHYKELLTHHVSPP-PASSSSECSLIHMGFPQHTIAALA 505
Query: 271 ---GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYH 324
+ S S+ + G+ GY P+C A+ CELP +C+ICGL LVS+PHL SYH
Sbjct: 506 DQDAKPSFSMAHLDSSSEPGLALGGYFYPQCWAKYCELPVECKICGLTLVSAPHLVWSYH 565
Query: 325 HLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDI 384
HLFP+ F E+ PL + C+GCQ L +YV C + FC++CD+
Sbjct: 566 HLFPLDAFQEI-PL----EEYKGERFCYGCQGQL----KDQHVYV-CTVFQNVFCVDCDV 615
Query: 385 YIHESLHNCPGC 396
++H+S+H C GC
Sbjct: 616 FVHDSVHCCLGC 627
>gi|239793430|dbj|BAH72833.1| ACYPI003683 [Acyrthosiphon pisum]
Length = 245
Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 101/250 (40%), Positives = 154/250 (61%), Gaps = 14/250 (5%)
Query: 155 SLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSA 214
S+QN+L++ ++ +PS+ +E+LI+ S+LS+CDPG+I +I+ K IR S+I L+A
Sbjct: 2 SVQNSLEIALSVMKMLPSHTSKEILIIGSSLSSCDPGEINTSIEMLKTHNIRVSMIHLAA 61
Query: 215 EMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEG- 273
E+ + +HLC +T G ++V +D+ HFK ++ P P + A+ +KMGFPQ +
Sbjct: 62 EVRMFRHLCNETKGKHNVIVDDVHFKHILWSLVEPVP-LPNSVDASCVKMGFPQELEQKP 120
Query: 274 SISICSCH--KEVKVGV-GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIA 330
+ CSCH + K+ G+ CP+C ++ CELP +C+ CGL LVSS HLARS HHL PI
Sbjct: 121 PFTTCSCHLAEGGKLNAKGFFCPQCNSKYCELPVECKCCGLILVSSLHLARSLHHLVPIK 180
Query: 331 PFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESL 390
PF ++ + S + C+GC++ + +Y C CKKH+C CDIY+H +L
Sbjct: 181 PFIKI------ELEEGSSAYCYGCRKRIKVPAE--NVYF-CESCKKHYCDGCDIYVHNTL 231
Query: 391 HNCPGCESLR 400
H CPGC R
Sbjct: 232 HVCPGCAVKR 241
>gi|389586086|dbj|GAB68815.1| transcription factor [Plasmodium cynomolgi strain B]
Length = 401
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 190/380 (50%), Gaps = 31/380 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHA---QYRRR----LRD---RSLVATTA 79
WE+ +RSW L E+ +G L+ + +Y++ LR R ++
Sbjct: 35 TWEQDV--ERSWNLLVEN-NGILQHVSQENLEEKCKQKYKKNQVCALRKGIFRHIIILFD 91
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
E DF+P R+ VV + VE+F+ FF +NP+ +G+V +K+ A + L + +
Sbjct: 92 MSSSMKERDFKPDRINVVLESVESFLTNFFFKNPVGHVGVVALKNSSAKLIQPLTSNMDD 151
Query: 140 HIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
+KAL+ + +G G SLQ L++ LL IP YG +E+LI+Y ++ TCD +I+ +
Sbjct: 152 IMKALLKERSMGLQGSPSLQQGLEIAHDLLIDIPLYGTKEILIIYGSIRTCDKKNILNIL 211
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA 257
++ + + + ++ EM I KH+C++T G+Y + + ++ M + P
Sbjct: 212 NLIVKNNMHVNCVSIAPEMHILKHICEETNGAYKICMTKNALLNE-MNNVTETPLWMSGM 270
Query: 258 IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSP 317
LI + FP + + +CSCH ++ Y C C + C++P+ C++CG+ L+S
Sbjct: 271 EPQLIHICFPVKKKISTQIMCSCHNQLNTDT-YICNFCNSYTCKIPSKCKVCGMHLISMH 329
Query: 318 HLARSYHHLFPIAPFDEVTPLCLNDPRNRSR-STCFGCQQSLLSSGNKPGLYVACPKCKK 376
L+ ++L + +PL L + S C C + L ++ C KCK
Sbjct: 330 DLSHITNNL-------QGSPLFLEIKNEKDGPSVCVSCNKRLYDKVSQ------CSKCKN 376
Query: 377 HFCLECDIYIHESLHNCPGC 396
FCL CD+YIHE L+ CP C
Sbjct: 377 IFCLGCDLYIHEDLNQCPFC 396
>gi|313240907|emb|CBY33192.1| unnamed protein product [Oikopleura dioica]
Length = 384
Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 130/403 (32%), Positives = 190/403 (47%), Gaps = 46/403 (11%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD------- 71
DE + + G WE Y +R+WEAL+ED++G L +SA ++RL
Sbjct: 2 DEGGDKHSGYR-WEGGY--ERTWEALREDDTGALIS-GSSAAKRLFAKKRLAQEAGQRIH 57
Query: 72 --RSLVATTARIQKAAEMDFR----PSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 125
R V + A+ D R P+R + ++ FV +FF PL Q+ LV +++
Sbjct: 58 IVRHCVLALDLSRSMADPDLRIDRYPNRAGCAVRSLKEFVPKFFASCPLGQLALVILQNK 117
Query: 126 VANCLTDLGGSPESHIKAL----MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 181
AN + LGGS +KAL + G S+ N + + +L+ + + +RE++ +
Sbjct: 118 RANIVVPLGGSEARLLKALNDIEVKGFKTGGQCSMVNGIAASKSMLNAVGEHSNREIIFV 177
Query: 182 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 241
+L+T D TI+ IRCSV+ LSAE+ I K L + T G Y V LD +
Sbjct: 178 VGSLNTIDVTSPFATIETVANEGIRCSVVSLSAEVNIWKKLAERTDGKYFVPLDPIDVSD 237
Query: 242 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCE 301
+E PP + L+KMGFPQ+ + Y CP+C+ RV
Sbjct: 238 K-LEELSRPPVESSSRQGVLVKMGFPQKEADAR---------------YICPQCRTRVKA 281
Query: 302 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP--------LCLNDPRNRSRSTCFG 353
+PT C +C L LVS+ HLAR YHHLFP + P L L + C G
Sbjct: 282 IPTLCDVCKLSLVSAAHLARCYHHLFPPSSVTPSIPEQSGEEIDLELERSQFEKIRPCVG 341
Query: 354 CQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C + +S + +V C KC C ECD +I E LH+CPGC
Sbjct: 342 CNYAPISV-EEGRQFVVCDKCLNSLCGECDGFIDEHLHSCPGC 383
>gi|66359374|ref|XP_626865.1| transcription factor TFIIH with a vWA domain [Cryptosporidium
parvum Iowa II]
gi|46228124|gb|EAK89023.1| transcription factor TFIIH with a vWA domain [Cryptosporidium
parvum Iowa II]
Length = 423
Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 123/424 (29%), Positives = 208/424 (49%), Gaps = 44/424 (10%)
Query: 18 EDEDDNLNGGLEAWERSYADD----RSWEALQEDESGFLRPIDNSAF--------YHAQY 65
E D N L+ E Y+ + ++WE L E ESG + D + F Y+ +
Sbjct: 5 EKLADTSNNSLDEQEVVYSWEQGLIKNWERLVETESGLVVIDDETRFDSNNADESYNIEL 64
Query: 66 RRRLRD--------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 117
+R + R++V E+D++P R+ + K E F+++ + NPL+QI
Sbjct: 65 LKRGPNTNIRRGLLRNIVIILDMTSNMLELDYKPDRLQCMVKCNEIFIKQLLEDNPLTQI 124
Query: 118 GLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGH 175
++++ DG+ + + + +++ L GC G S+QN L+ + LL IP YG
Sbjct: 125 SVISIYDGIGEVIISYNSNFLEIMTSILNYLKKGCKGSMSIQNGLEKAKYLLVSIPPYGT 184
Query: 176 REVLILYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVAL 234
+E++ ++ + D + E ++ + I + I E++I K + + TGG A+
Sbjct: 185 KEIIFFLGSMRSVDNSFLFNEWVEGFSSNNIIINAILFIPELYIIKTITKMTGGVCLCAM 244
Query: 235 DESHFKELIMEH--APPPPAIAEFAI-ANLIKMGFPQRAGEGSISI-CSCHKEVKVGVGY 290
+ H +L +E+ PPP IA + NL+ MGFP+ + CSCH+ + GY
Sbjct: 245 NNDHLLKLTLENFIKPPPNNIASTPLNINLVTMGFPEYVSNQTHPFGCSCHRSL-THRGY 303
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST 350
+CP+CK+ VC LPT C +C + L+S HLA+S+ +LF ++TP+ N ++ S+
Sbjct: 304 SCPKCKSIVCYLPTKCPVCLIYLISPNHLAKSFAYLF---QHPDITPI-KNGEYSKIESS 359
Query: 351 -----CFGCQQSL-----LSSGNKPGLY--VACPKCKKHFCLECDIYIHESLHNCPGCES 398
C C+ L+SG++ + C C FC EC +I +LH CP C S
Sbjct: 360 SIKTKCELCESQFSNNVYLNSGSRSNIINKYLCTNCSTQFCNECCKFIFNTLHQCPICCS 419
Query: 399 LRHS 402
LR S
Sbjct: 420 LRIS 423
>gi|68068799|ref|XP_676310.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56495950|emb|CAH97731.1| conserved hypothetical protein [Plasmodium berghei]
Length = 401
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 192/378 (50%), Gaps = 29/378 (7%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAF---YHAQYRRR----LRD---RSLVATTAR 80
WE+ +RSW L E+ +G L+ ++ + +Y++ LR R+++
Sbjct: 36 WEQDV--ERSWNLLVEN-NGILQHVNQETYDEKNKQKYKKSQTCSLRKGIFRNVIILFDM 92
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
E DF+P+R+ V+ + VE F++ FF +NP+ +G+V +K+ A + L + +
Sbjct: 93 SSCMKERDFKPNRITVILECVEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLTSNIDDV 152
Query: 141 IKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+ +L+ K G G SLQ L++ LL +P YG +E+LI+Y ++ TCD +I++ +
Sbjct: 153 LNSLVKEQKEGLQGSPSLQEGLEIAHNLLMDMPLYGTKEILIMYGSIRTCDKKNILKYLD 212
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
++ + + I ++ EM I KH+C+ T G Y + +++ I + A P +
Sbjct: 213 LLIKNNMYVNCISIAPEMHILKHICEKTNGIYKICTNKNILINEINQVAETPLWMHGME- 271
Query: 259 ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPH 318
LI + FP + + +CSCH + Y C C + C++P+ C+ICG+ L+S
Sbjct: 272 PQLIHICFPVKKKINTQIVCSCHNILNTDT-YICNFCNSYTCKIPSKCKICGIHLISMHD 330
Query: 319 LARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHF 378
L+ + L F E+ N+ N + C C Q L ++ C KCK F
Sbjct: 331 LSHITNSLQASPLFVEIR----NEQNNHTH--CASCNQLLYDKVSQ------CTKCKNIF 378
Query: 379 CLECDIYIHESLHNCPGC 396
CLECD++IHE L+ CP C
Sbjct: 379 CLECDVFIHEDLNQCPFC 396
>gi|82753444|ref|XP_727680.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483641|gb|EAA19245.1| W43325 comes from this gene., putative [Plasmodium yoelii yoelii]
Length = 401
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 108/379 (28%), Positives = 191/379 (50%), Gaps = 31/379 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYR----------RRLRDRSLVATTAR 80
WE+ +RSW L E+ +G L+ ++ + + R+ R+++
Sbjct: 36 WEQDV--ERSWNLLVEN-NGILQHVNQETYEEKNKQKYKKNQTCSLRKGIFRNVIILFDM 92
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
E DF+P+R+ V+ + VE F++ FF +NP+ +G+V +K+ A + L + +
Sbjct: 93 SSSMKERDFKPNRITVILECVEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLTSNIDDV 152
Query: 141 IKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQ 198
+ +L+ K G +G SLQ L++ LL +P YG +E+LI+Y ++ TCD +I++ +
Sbjct: 153 LNSLVKEQKEGLNGSPSLQEGLEIAHNLLMDMPLYGTKEILIMYGSIRTCDKKNILKYLD 212
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
++ + + I ++ EM I KH+C+ T G Y + ++ I + A P +
Sbjct: 213 LLIKNNMYVNCISIAPEMHILKHICEKTNGIYKICTSKNILINEINQVAETPLWMHGME- 271
Query: 259 ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPH 318
LI + FP + + +CSCH + Y C C + C++P+ C+ICG+ L+S
Sbjct: 272 PQLIHICFPVKKKINTQIVCSCHNILNTDT-YICNFCNSYTCKIPSKCKICGIHLISMHD 330
Query: 319 LARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGCQQSLLSSGNKPGLYVACPKCKKH 377
L+ ++L + +PL + ++ T C C Q L ++ C KCK
Sbjct: 331 LSHITNNL-------QASPLFVEIKNEQNYYTHCSSCNQQLYDKVSQ------CTKCKNI 377
Query: 378 FCLECDIYIHESLHNCPGC 396
FCLECD++IHE L+ CP C
Sbjct: 378 FCLECDVFIHEDLNQCPFC 396
>gi|323454955|gb|EGB10824.1| hypothetical protein AURANDRAFT_58771 [Aureococcus anophagefferens]
Length = 361
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 132/391 (33%), Positives = 178/391 (45%), Gaps = 53/391 (13%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRR--------------LRDRS 73
++ WER A + +W AL+ED G R +D +R +R +
Sbjct: 1 MQRWER--AGEGAWAALEEDAEG--RLVDGGPGSRDGGGKRRRVGGGAGGLARGLIRYVA 56
Query: 74 LVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
LV + A D RPSR+A F+ + F NP S +V +DG A + L
Sbjct: 57 LVVDGS--AAAGSGDLRPSRLAACCAAGAEFLADLFAGNPFSSACVVDARDGAAKLASPL 114
Query: 134 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 191
G+ +H AL +G+ +G SLQ AL+ L P YG REV++L S+L+T D G
Sbjct: 115 SGAARAHADALAAVGRAAPAGAFSLQRALEAAAAALEAAPDYGFREVVVLSSSLATRDAG 174
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 251
D+ + +KIRC V+ L+AE ++ + L TGG ++VALD H L+ PPP
Sbjct: 175 DLNAVAARLAAAKIRCHVVNLAAETYVVRKLADATGGEFAVALDAGHLAALLGNRVEPPP 234
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVG------VGYTCPRCKARVCELPTD 305
A+ A + AGE G + CPRC R ELP
Sbjct: 235 LAADDA----------RLAGEPPPLPAPALASSAGGAPAWRATTHACPRCATRAAELPAA 284
Query: 306 CRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKP 365
C +C L LVS+PHLARSYHHLFP+A F R CF C L
Sbjct: 285 CAVCDLPLVSAPHLARSYHHLFPVAAFPG---------RVAEDGACFACGGGLAPRAFD- 334
Query: 366 GLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
CP C FC +CD +H +LH CPGC
Sbjct: 335 -----CPACGAAFCGDCDEAVHAALHVCPGC 360
>gi|322801575|gb|EFZ22231.1| hypothetical protein SINV_15041 [Solenopsis invicta]
Length = 202
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/199 (47%), Positives = 124/199 (62%), Gaps = 22/199 (11%)
Query: 209 VIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQ 268
VIGL+AE++ICK + TGG +SVALD+ H+KE + H PPPA A L+KMGFP
Sbjct: 1 VIGLAAELYICKRMANLTGGEHSVALDDKHYKEQLNAHIDPPPAATRLDAA-LVKMGFPH 59
Query: 269 RA-----GEGSISICSCHKE-----VKV-GVGYTCPRCKARVCELPTDCRICGLQLVSSP 317
A + S+++C CH + VK+ GY CP+C ++ CELP +CR CGL LVS+P
Sbjct: 60 HALHSSAPDTSMTVCMCHAQNSDEPVKLMTTGYLCPQCLSKHCELPVECRACGLTLVSAP 119
Query: 318 HLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKH 377
HLARSYH+LFP+ PF E+ S CFGCQ++L K C KC +
Sbjct: 120 HLARSYHYLFPVDPFKEIA-------SESDHSFCFGCQKALAQKDKK---VYTCGKCNQT 169
Query: 378 FCLECDIYIHESLHNCPGC 396
FCL+C+I+IHE LH CPGC
Sbjct: 170 FCLDCEIFIHEILHTCPGC 188
>gi|221060951|ref|XP_002262045.1| ssl1-like protein [Plasmodium knowlesi strain H]
gi|193811195|emb|CAQ41923.1| ssl1-like protein, putative [Plasmodium knowlesi strain H]
Length = 401
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/379 (28%), Positives = 182/379 (48%), Gaps = 29/379 (7%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSLVATTA 79
WE+ +RSW L E+ +G L+ + F ++ ++ R ++
Sbjct: 35 TWEQDV--ERSWNLLVEN-NGVLQHVSQENFEEKSKQKYKKNQVCALRKGIFRHIIILFD 91
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
E DF+P R+ VV + VE F+ FF +NP+ +G+V +K+ A + L + E
Sbjct: 92 MSSSMKERDFKPDRINVVLECVENFLTNFFFKNPVGHVGVVALKNSSAKLIQPLTSNMED 151
Query: 140 HIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
+ AL+ + +G G SL+ L++ LL IP YG +E+LI+Y ++ TCD +I+ +
Sbjct: 152 IMNALVKERSMGLQGSPSLEQGLEIAHDLLVDIPLYGTKEILIMYGSIRTCDKKNILNIL 211
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA 257
++ + + + +S EM I KH+C++T G Y + + ++ M + P
Sbjct: 212 NLIVKNNMHVNCVSISPEMHILKHICEETNGVYKICMTKNALMNE-MNNVTETPLWMIGM 270
Query: 258 IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSP 317
LI + FP + + +CSCH + Y C C + C++P+ C++CG+ L+S
Sbjct: 271 EPQLIHICFPIKKKISTQIMCSCHNHLNTDT-YICNFCNSYTCKIPSKCKVCGMHLISMH 329
Query: 318 HLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKH 377
L+ ++L F E+ S C C + L ++ C KCK
Sbjct: 330 DLSHITNNLQGSPLFIEI------KNEKNGPSACVSCNKPLYDKVSQ------CSKCKNI 377
Query: 378 FCLECDIYIHESLHNCPGC 396
FCL CD+YIHE L+ CP C
Sbjct: 378 FCLGCDLYIHEDLNQCPFC 396
>gi|67595351|ref|XP_665994.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54656889|gb|EAL35767.1| hypothetical protein Chro.30353 [Cryptosporidium hominis]
Length = 423
Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 122/424 (28%), Positives = 205/424 (48%), Gaps = 44/424 (10%)
Query: 18 EDEDDNLNGGLEAWERSYADD----RSWEALQEDESGFLRPIDNSAF--------YHAQY 65
E D N L+ E Y+ + ++WE L E ESG + D + F Y+ +
Sbjct: 5 EKLADTSNNSLDEQEVVYSWEQGLIKNWERLVETESGLVVIDDEARFDSNNADESYNIEL 64
Query: 66 RRRLRD--------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQI 117
+R + R++V E+D++P R+ + K E F+++ + NPL+QI
Sbjct: 65 LKRAPNTNIRRGLLRNIVIILDMTSNMLELDYKPDRLQCMVKCNEIFIKQLLEDNPLTQI 124
Query: 118 GLVTVKDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGH 175
++++ DG+ + + + +++ L GC G S+QN L+ + LL IP YG
Sbjct: 125 SVISIYDGIGEVIISYNSNFLEIMTSILNYLKKGCKGSMSIQNGLEKAKYLLVSIPPYGT 184
Query: 176 REVLILYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVAL 234
+E++ ++ + D + E ++ + I + I E++I K + + TGG A+
Sbjct: 185 KEIIFFLGSMRSVDNSFLFNEWVEGFSSNNIIINAILFIPELYIIKTITKMTGGVCLCAM 244
Query: 235 DESHFKELIMEH--APPPPAIAEFAI-ANLIKMGFPQRAGEGSISI-CSCHKEVKVGVGY 290
+ H +L +E+ PPP IA + NL+ MGFP+ + CSCH + GY
Sbjct: 245 NNDHLLKLTLENFIKPPPNNIASTPLNINLVTMGFPEYLNNQTHPFGCSCHGSL-THRGY 303
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFP---IAPFD--EVTPLCLNDPRN 345
+CP+CK+ VC LPT C +C + L+S HLA+S+ +LF I P E + + +
Sbjct: 304 SCPKCKSIVCYLPTKCPVCLIYLISPNHLAKSFAYLFQHPDIIPIKNGEYSKI----ESS 359
Query: 346 RSRSTCFGCQQSL-----LSSGNKPGLY--VACPKCKKHFCLECDIYIHESLHNCPGCES 398
++ C C+ L+SG++ + C C FC EC +I +LH CP C S
Sbjct: 360 SIKTKCELCESQFSNNVYLNSGSRSNIINKYLCTNCNTQFCNECCKFIFTTLHQCPICCS 419
Query: 399 LRHS 402
LR S
Sbjct: 420 LRIS 423
>gi|156102767|ref|XP_001617076.1| transcription factor [Plasmodium vivax Sal-1]
gi|148805950|gb|EDL47349.1| transcription factor, putative [Plasmodium vivax]
Length = 401
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 187/381 (49%), Gaps = 33/381 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHA---QYRRR----LRD---RSLVATTA 79
WE+ +RSW L E+ +G L+ + +Y++ LR R ++
Sbjct: 35 TWEQDV--ERSWNLLVEN-NGILQHVSQENLEEKGKQKYKKNQVCALRKGIFRHIIILFD 91
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
E DF+P R+ VV + VE F+ FF +NP+ +G+V +K+ A + L + E
Sbjct: 92 MSSSMKERDFKPDRINVVLECVENFLTHFFFKNPVGHVGVVALKNSSAKLIQPLTSNMED 151
Query: 140 HIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
AL+ + +G G SLQ L++ LL IP YG +E+LI+Y ++ TCD +I+ +
Sbjct: 152 ITNALLKERSMGLQGSPSLQQGLEIAHDLLIDIPLYGTKEILIMYGSIRTCDKKNILNIL 211
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA 257
++ + + + ++ EM I KH+C+ T GSY + + ++ M + P
Sbjct: 212 NLIVKNNMHVNCVSIAPEMHILKHICEQTNGSYKICMTKNSLMNE-MNNITETPLWMMGM 270
Query: 258 IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSP 317
LI + FP + + +CSCH + Y C C + C++P+ C++CG+ L+S
Sbjct: 271 EPQLIHICFPIKKKISTQIMCSCHNNLNTDT-YICNFCNSYTCKIPSKCKVCGMHLISMH 329
Query: 318 HLARSYHHLFPIAPFDEVTPLCLNDPRNRSR--STCFGCQQSLLSSGNKPGLYVACPKCK 375
L+ ++L + +PL L + +N + S C C + L ++ C KC
Sbjct: 330 DLSHITNNL-------QGSPLFL-EIKNEEKGPSVCVSCNKRLYDKVSQ------CSKCG 375
Query: 376 KHFCLECDIYIHESLHNCPGC 396
FCL CD+YIHE L+ CP C
Sbjct: 376 NLFCLACDLYIHEDLNQCPFC 396
>gi|261190444|ref|XP_002621631.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
SLH14081]
gi|239591054|gb|EEQ73635.1| RNA polymerase TFIIH complex subunit Ssl1 [Ajellomyces dermatitidis
SLH14081]
Length = 502
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 166/317 (52%), Gaps = 37/317 (11%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
GG E WE S R+WE+L E G + + +R LRD R L+
Sbjct: 74 GGAE-WEVS----RTWESLVESADGTISATVEGLLEAGKRKRLLRDTTPLQRGIIRHLIL 128
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
AE D RP+R + + + FV EFF+QNP+SQ+G++ ++DG+A ++D+ G+
Sbjct: 129 VLDLSSAMAEKDLRPTRYLLTLRYAQEFVLEFFEQNPISQLGVLGMRDGLAVRISDMSGN 188
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P HI A+ + G SLQN L++ +G L + P++G REV I++ AL + DPGDI
Sbjct: 189 PTDHILAIQSLRPKDPKGMPSLQNTLEMARGALFRTPTHGTREVFIIFGALLSSDPGDIH 248
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIME----- 245
+TI KIR S+IGL+A++ IC+ +C T Y VAL+E HF+EL M
Sbjct: 249 KTINTLVADKIRVSIIGLAAQVAICRDICARTNNGDDSGYGVALNEQHFRELFMNVTTPP 308
Query: 246 ---------HAPPPPAIAEFAIANLIKMGFPQR--AGEGSISICSCHKEVKVGVGYTCPR 294
++ ++L+ MGFP R + + ++C+CH + GY C R
Sbjct: 309 ATTVAPTPTTTKEETKTSQTTTSSLLMMGFPSRTLSPTTTPTLCACHSKPSR-TGYLCSR 367
Query: 295 CKARVCELPTDCRICGL 311
C A+VC LPT C GL
Sbjct: 368 CGAKVCTLPTSCPCGGL 384
>gi|294911611|ref|XP_002778020.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239886141|gb|EER09815.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 421
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 203/411 (49%), Gaps = 62/411 (15%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAF---YHAQY--------------------- 65
AWE Y +SW + +D+ G L D ++ Y Y
Sbjct: 28 AWEADYT--KSWINITKDQHGKLVVRDEASIARKYPRNYDGVLPVSAGEDGELVHKQSMA 85
Query: 66 --RRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQV-EAFVREFFDQNPLSQIGLVTV 122
R LR LV + + MD++ +R+ V + F+ ++FD NP+S + ++ +
Sbjct: 86 LKRGLLRFLYLVVDMSSAMQ--NMDYKQNRLDFVVSHLCRNFIPQYFDLNPISNLSVLAL 143
Query: 123 KDGVANCLTDLGGSPESHIKALM--GKLGCSGDSSLQNALDLV-QGLLSQIPSYGHREVL 179
+D A+ +T + G P S ++ ++ G SG +SL NAL+ V Q +P YG REVL
Sbjct: 144 RDQRAHFVTRMSGQPASQMERVLQFSTGGASGSASLVNALEAVGQAAKGSLPRYGTREVL 203
Query: 180 ILYSALSTCDP---GDIM-----ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYS 231
I++ +L + DP G ++ I++ K + +R SVI LS E++ + + + TGG++S
Sbjct: 204 IVWGSLHSADPPTSGKLIPDCVDRLIEEIKPNSVRVSVISLSPELYALRKVVEMTGGTFS 263
Query: 232 VALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP-QRAGEGSISI-----CSCHKEVK 285
VA HFK L+ +H PP ++ + IKMGFP +RA +G+ + C CH ++
Sbjct: 264 VATSPIHFKRLMQKHLTPPNWVSS---PSYIKMGFPVRRACDGNHTADPPIKCMCHNRLQ 320
Query: 286 VGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRN 345
Y CP+C + VCE+P +C +C L LV L + + H++ + P + P ++ P++
Sbjct: 321 KTFVYICPQCHSPVCEIPVNCPVCRLPLVDDDALKKHHRHIYSM-PTYTLLP-TVDYPKS 378
Query: 346 RSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
TC C G + C +C C ECD++ H L +CPGC
Sbjct: 379 Y---TCQFCGTDFTEGGAR------CDQCLSDVCYECDMFAHNKLRHCPGC 420
>gi|348557313|ref|XP_003464464.1| PREDICTED: general transcription factor IIH subunit 2-like [Cavia
porcellus]
Length = 302
Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 171/318 (53%), Gaps = 55/318 (17%)
Query: 101 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQN 158
+E FV E+FDQN +SQIG++ K A LT+L G+P HI +L + C G+ SL N
Sbjct: 23 LEYFVEEYFDQNSISQIGIIVTKR--AEKLTELSGNPRKHITSLKKATDMTCHGEPSLYN 80
Query: 159 ALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 218
+L + A+ T + D+M+T++ K VIG+SAE+ +
Sbjct: 81 SLSM---------------------AMQTLNFLDLMKTLKTAKMC-----VIGMSAEVRV 114
Query: 219 CKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRA-------- 270
C L ++TG +Y LDESH+KEL+ H PPPA + +LI MGFPQ
Sbjct: 115 CTGLARETGSTYHEILDESHYKELLTHHVSPPPASSSSE-CSLIHMGFPQHTIAALADQD 173
Query: 271 GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLF 327
+ S S+ + G+ GY P+C A+ CELP +C++CGL LVS+PHLA YHHLF
Sbjct: 174 AKPSFSMAHLDSSSEPGLALGGYFYPQCWAKYCELPVECKMCGLTLVSAPHLAWLYHHLF 233
Query: 328 PIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIH 387
P+ F E+ PL + C+GCQ L +YV C + FC++CD+++H
Sbjct: 234 PLDAFQEI-PL----EEYKGERFCYGCQGQL----KDQHVYV-CIVFQNVFCVDCDVFVH 283
Query: 388 ESLHNCPGCESLRHSNPI 405
+S+H CPGC H PI
Sbjct: 284 DSVHCCPGC---IHKIPI 298
>gi|124513058|ref|XP_001349885.1| TFIIH basal transcription factor subunit [Plasmodium falciparum
3D7]
gi|23615302|emb|CAD52293.1| TFIIH basal transcription factor subunit [Plasmodium falciparum
3D7]
Length = 401
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 198/408 (48%), Gaps = 31/408 (7%)
Query: 3 NSERKRLNGEAEEEEEDEDDNLN--GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
NSE K + E + DE++ G WE+ +RSW L E+ +G L+ +
Sbjct: 6 NSENKVIFVEDVVRDFDENEIFEEITGKFTWEQDV--ERSWNLLVEN-NGVLQHVSQENN 62
Query: 61 YHAQ---YRRR----LRD---RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFD 110
+ YR+ LR R ++ E D +P R+ V + VE+F++ FF
Sbjct: 63 ENENKEKYRKNQGSSLRKGIFRHIIILFDMSSSMKERDLKPDRINVALECVESFLKNFFF 122
Query: 111 QNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLS 168
+NP+ +G+V +K+ A + + + + +++ + G G SL+ L + LL
Sbjct: 123 KNPVGHVGVVALKNSSAKLIQPFTSNVDDILNSILKERTAGLQGSPSLEEGLQIAHDLLI 182
Query: 169 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG 228
+P YG +EVLI+Y ++ TCD +I+ ++ +S I + I ++ EM I KH+C+ + G
Sbjct: 183 DMPLYGTKEVLIMYGSIRTCDKKNILNVLELLVKSNIYVNCISIAPEMHILKHICEKSNG 242
Query: 229 SYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGV 288
Y + ++ I +A P + LI + FP + + +CSCH ++
Sbjct: 243 FYKICSSKNSLMNEINNNAETPLWMQGME-PQLIHICFPTKKKISTQIMCSCHGKLNTDT 301
Query: 289 GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR 348
Y C C + C++P+ C++CG+ L+S L+ ++L F E+ N+ N
Sbjct: 302 -YVCNFCNSYTCKIPSKCKVCGIHLISMHDLSHITNNLQGSPLFIEIK----NEQGN--Y 354
Query: 349 STCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C C Q L + +Y C KC+ FCLECDI+IHE L+ CP C
Sbjct: 355 KVCSSCNQQLYNK-----IY-QCTKCQHIFCLECDIFIHEELNQCPFC 396
>gi|70952334|ref|XP_745342.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56525635|emb|CAH76815.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 400
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 189/380 (49%), Gaps = 32/380 (8%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYR----------RRLRDRSLVATTA 79
WE+ +RSW L E+ +G L+ ++ + + R+ R+++
Sbjct: 35 VWEQDV--ERSWNLLVEN-NGILQHVNQETYEEKNKQKYKKNQTCSLRKGIFRNVIILFD 91
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
E DF+P+R+ V+ + VE F++ FF +NP+ +G+V +K+ A + L + +
Sbjct: 92 MSSSMTERDFKPNRITVILECVEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLTSNIDD 151
Query: 140 HIKALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI 197
+ +L+ K G G SLQ L++ LL + YG +E+LI+Y ++ TCD +I++ +
Sbjct: 152 VLNSLVKEQKEGLQGSPSLQEGLEIAHNLLMDML-YGTKEILIMYGSIRTCDKKNILKYL 210
Query: 198 QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFA 257
++ + + I ++ EM I KH+C+ T G Y + ++ I + A P +
Sbjct: 211 DLLIKNNMYVNCISIAPEMHILKHICEKTHGIYKICTSKNILINEINQVAETPLWMHGME 270
Query: 258 IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSP 317
LI + FP + + +CSCH + Y C C + C++P+ C++CG+ L+S
Sbjct: 271 -PQLIHICFPVKKKINTQIVCSCHNTLNTDT-YICNFCNSYTCKIPSKCKVCGIHLISMH 328
Query: 318 HLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST-CFGCQQSLLSSGNKPGLYVACPKCKK 376
L+ ++L + +PL + ++ T C C Q L ++ C KCK
Sbjct: 329 DLSHITNNL-------QASPLFIEIKNEQNYYTYCSSCNQQLYDKVSQ------CTKCKN 375
Query: 377 HFCLECDIYIHESLHNCPGC 396
FCLECD++IHE L+ CP C
Sbjct: 376 IFCLECDVFIHEDLNQCPFC 395
>gi|225554656|gb|EEH02952.1| transcription factor TFIIH complex subunit Ssl1 [Ajellomyces
capsulatus G186AR]
Length = 467
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 149/274 (54%), Gaps = 47/274 (17%)
Query: 168 SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG 227
S P++G REVLI++ AL + DPGDI +TI KIR S+IGL+A++ IC+ LC T
Sbjct: 178 SHTPTHGTREVLIIFGALLSSDPGDIHQTITALVADKIRISIIGLAAQVAICRDLCARTN 237
Query: 228 GS----YSVALDESHFKELIME-HAPPPPAIAEFAI------------------ANLIKM 264
Y VAL+E HF+EL M+ APP +A + ++L+ M
Sbjct: 238 NGDDTVYGVALNEQHFRELFMDVTAPPVTTVAPTSTPTASSANGPKTTTTNTTASSLLMM 297
Query: 265 GFPQRAGEGSISI--CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS 322
GFP + + C+CH + GY C RC A+VC LP+ C CGL L+ S HLARS
Sbjct: 298 GFPSLTLTTTPTPSLCACHSKPSRA-GYLCCRCNAKVCTLPSSCPCCGLTLILSTHLARS 356
Query: 323 YHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC-----QQSLLSSGNKP---------GLY 368
YHHLFP+ + EV+ R RS S CF C + L SG G+
Sbjct: 357 YHHLFPLMNWVEVS--WRRAARKRSAS-CFACGVGFPRMPKLVSGEPEETAKAAVGVGVS 413
Query: 369 VA----CPKCKKHFCLECDIYIHESLHNCPGCES 398
V+ CP C+ HFC++CD++ HE +HNCPGC+S
Sbjct: 414 VSGRYECPVCECHFCIDCDVFAHEVVHNCPGCQS 447
>gi|358371546|dbj|GAA88153.1| RNA polymerase TFIIH complex subunit Ssl1 [Aspergillus kawachii IFO
4308]
Length = 320
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 146/263 (55%), Gaps = 21/263 (7%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
GG E WE S R+WE L E G + + +R LRD R L+
Sbjct: 42 GGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLRDTTPLQRGIIRHLIL 96
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
Q E D RP+R + + + FVREFF+QNP+SQ+G++ +KDG+A ++D+ G+
Sbjct: 97 IIDLSQSMTEKDLRPTRYLLSLRYAQEFVREFFEQNPISQLGVLGLKDGLAVRVSDMSGN 156
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
P HI A+ + G SLQN ++ +G L PS+G RE+ +++ +L + DPGDI
Sbjct: 157 PTEHISAIQSLRDQDPKGLPSLQNGFEMARGALFHTPSHGTREIFVIFGSLLSSDPGDIH 216
Query: 195 ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPP 250
+TI KIR ++GL+A++ IC+ +C T G +Y VAL+E HF++L+M PP
Sbjct: 217 QTITTLINDKIRVGIVGLAAQVAICREICGKTNGGDDTTYGVALNEQHFRDLVMSVTTPP 276
Query: 251 PAIAEF-AIANLIKMGFPQRAGE 272
++ + ++L+ MGFP R E
Sbjct: 277 ATYSQKQSTSSLLMMGFPSRTVE 299
>gi|300709301|ref|XP_002996816.1| hypothetical protein NCER_100001 [Nosema ceranae BRL01]
gi|239606142|gb|EEQ83145.1| hypothetical protein NCER_100001 [Nosema ceranae BRL01]
Length = 335
Score = 174 bits (441), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 191/376 (50%), Gaps = 46/376 (12%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF-YHAQYRRRLRD-RSLVATTARIQK 83
GG AWE+ Y R+W L ++ S ++ + F Y+ + + LR L+ ++ I K
Sbjct: 3 GGF-AWEKEYK--RTW--LDDERSDTIKEFKLNKFVYNDRKKGVLRHLHILIDISSSIDK 57
Query: 84 AAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKA 143
D+ PS V + +E F+ FF +NP+S + TV + + I
Sbjct: 58 N---DYLPSIRKNVIRSLEKFIPTFFLENPISGLSFSTVNEKTVK------STNSVEIAD 108
Query: 144 LMGKLGCSGDSSLQNALDLVQGLLSQIPSYGH-REVLILYSALSTCDPGDIMETIQKCKE 202
L+ + G G+ SL N L + QI SY RE+L++ S+L DP + I ++
Sbjct: 109 LLNQKG-EGNFSLLNGL---YDAIDQIKSYTFCREILVIVSSLVLKDPDSYTDVIDLLRK 164
Query: 203 SKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLI 262
I+ ++I L E+ I K++ + TGG + V L+ HF ++ P + NLI
Sbjct: 165 HNIKVNIISLCGELMIYKNIVESTGGKFFVPLNIDHFNYIL--RCMTVPGELNSSTINLI 222
Query: 263 KMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS 322
K+GFP+ E + C+CH +++ VGY CP CK +C LP C IC LQLVSS ++A++
Sbjct: 223 KLGFPKVIYEEGV--CACHLQLQ-SVGYECPLCKTFICSLPMGCPICELQLVSSLNIAKA 279
Query: 323 YHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLEC 382
+ H++P+APF + C N CF C N PG + +C KC +C C
Sbjct: 280 FQHMYPLAPFTK----CCN-------GVCFVC--------NSPGNF-SCEKCNSVYCDSC 319
Query: 383 DIYIHESLHNCPGCES 398
D+++H +L+ C GC++
Sbjct: 320 DLFVHNNLNFCLGCKN 335
>gi|209880135|ref|XP_002141507.1| suppressor of stem-loop protein 1 [Cryptosporidium muris RN66]
gi|209557113|gb|EEA07158.1| suppressor of stem-loop protein 1, putative [Cryptosporidium muris
RN66]
Length = 424
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 191/411 (46%), Gaps = 36/411 (8%)
Query: 14 EEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNS--------------- 58
+ E ++D L L WE+ +++WE L E SG L +D+S
Sbjct: 12 KRNERFDNDTL---LYTWEQGV--NKTWEKLVETSSG-LALLDHSLQSDQWNITKQELDD 65
Query: 59 --AFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ 116
+ RR R++V E+D++P R+ + + ++ F+ +NPL+Q
Sbjct: 66 ILKISKSLNTRRGFLRNIVIILDMSSSMLELDYKPDRLQCMVRCIDTFICNLLQENPLTQ 125
Query: 117 IGLVTVKDGVANCLTDLGGSPESHIKALM--GKLGCSGDSSLQNALDLVQGLLSQIPSYG 174
I ++++++G+ + +T + + ++ K GCSG S++N L+ + LL+ IP YG
Sbjct: 126 ISVISIRNGLTSIVTTYNSNYREIVSGILSEAKNGCSGVMSIRNGLEKAKQLLASIPPYG 185
Query: 175 HREVLILYSALSTCDPGDIM-ETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVA 233
+E++ ++ + D ++ E + I + + E+FI K + TGG A
Sbjct: 186 TKEIVFFLGSMRSIDNDSMLNEWLDDFIAHNIVINALLFIPELFIIKTITTKTGGICLCA 245
Query: 234 LDESHFKELIMEHAPPPPAIAEFAI---ANLIKMGFPQRAGEGSISI-CSCHKEVKVGVG 289
L+ H +L++E+ PP+ ++ NL+ MGFP + CSCHK + G
Sbjct: 246 LNSEHMLQLLLENFVKPPSYSQLNTPLHINLVPMGFPMYFNNSGYPLQCSCHKSITSD-G 304
Query: 290 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS 349
Y CPRCK+ VC LP C IC L L S+ HL +S+ LF P EV L + ++
Sbjct: 305 YCCPRCKSLVCYLPIKCPICNLYLASANHLTKSFAFLFK-PPSMEVLQLNPGEYKSDIPR 363
Query: 350 TCFGCQQSLLSSGNK----PGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C CQ S P + C C C++C I +LH CP C
Sbjct: 364 HCRFCQNLFTSKATYRNGFPFSLIKCTNCCSFLCIDCCKLILLALHQCPEC 414
>gi|189240734|ref|XP_967768.2| PREDICTED: similar to btf [Tribolium castaneum]
Length = 236
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 122/177 (68%), Gaps = 4/177 (2%)
Query: 101 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQN 158
+E F+ EFFDQNP+SQ+G++ + + A ++DL G+ HIKA+ + + G+ SLQN
Sbjct: 52 LENFIEEFFDQNPISQLGIIIMHNKRAEKISDLAGNARKHIKAVQNLKQTSLVGEPSLQN 111
Query: 159 ALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 218
++++ L +PS+ RE+L++ +L+TCDPGDI TIQ K +RCSVIGL+AE+++
Sbjct: 112 SIEMALRALKLLPSHASREILVIMGSLTTCDPGDITTTIQMLKTEGVRCSVIGLAAEVYV 171
Query: 219 CKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP-QRAGEGS 274
C+ L TGG Y+V LD+ HFK+L+ + PPPA A+ +NLIKMGFP Q + EG+
Sbjct: 172 CRQLANQTGGLYNVILDDCHFKDLLYQQVDPPPA-AQTLESNLIKMGFPHQMSVEGT 227
>gi|270012914|gb|EFA09362.1| hypothetical protein TcasGA2_TC001923 [Tribolium castaneum]
Length = 191
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/177 (45%), Positives = 122/177 (68%), Gaps = 4/177 (2%)
Query: 101 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQN 158
+E F+ EFFDQNP+SQ+G++ + + A ++DL G+ HIKA+ + + G+ SLQN
Sbjct: 7 LENFIEEFFDQNPISQLGIIIMHNKRAEKISDLAGNARKHIKAVQNLKQTSLVGEPSLQN 66
Query: 159 ALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFI 218
++++ L +PS+ RE+L++ +L+TCDPGDI TIQ K +RCSVIGL+AE+++
Sbjct: 67 SIEMALRALKLLPSHASREILVIMGSLTTCDPGDITTTIQMLKTEGVRCSVIGLAAEVYV 126
Query: 219 CKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP-QRAGEGS 274
C+ L TGG Y+V LD+ HFK+L+ + PPPA A+ +NLIKMGFP Q + EG+
Sbjct: 127 CRQLANQTGGLYNVILDDCHFKDLLYQQVDPPPA-AQTLESNLIKMGFPHQMSVEGT 182
>gi|242807960|ref|XP_002485064.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218715689|gb|EED15111.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 313
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 135/235 (57%), Gaps = 19/235 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE S R+WE++ E G + + +R LRD R L+
Sbjct: 41 WEVS----RTWESVVEGADGTISSTVEGLLEAGKRKRLLRDTTPLQRGIIRHLILVLDLS 96
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
Q AE D RP+R + + + FV EFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI
Sbjct: 97 QSMAEKDIRPTRYLLALRYAQEFVIEFFEQNPISQLGVIGMRDGLAVRISDMSGNPTDHI 156
Query: 142 KAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
A+ + G SLQNAL++ +G L PS+G REVLI++ +L + DPGDI +T++
Sbjct: 157 TAIHALRSDDPKGLPSLQNALEMARGALFHTPSHGTREVLIVFGSLLSSDPGDIHQTLKS 216
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGS----YSVALDESHFKELIMEHAPPP 250
KIR ++GL+A++ IC+ LC T G Y VAL+E HF+EL+ME PP
Sbjct: 217 LVADKIRVGIVGLAAQVAICRELCAKTNGGDDTVYGVALNEQHFRELMMEVTIPP 271
>gi|428176074|gb|EKX44960.1| SSL1 transcription factor & nucleotide excision repair [Guillardia
theta CCMP2712]
Length = 289
Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 105/317 (33%), Positives = 162/317 (51%), Gaps = 42/317 (13%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM 145
+ D RP+R+ VV + V +F+ FFDQNP+SQ+ LV ++ G A LT+L G+ H L
Sbjct: 3 QRDMRPTRLGVVQQVVGSFLDNFFDQNPISQVSLVELRGGKAEKLTELSGNSRHHKNKLE 62
Query: 146 GKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKI 205
+L + + + SY R ++ PG + + K + +
Sbjct: 63 ERLAAHRSAGAGMPSMRAGVVWDKRSSYDVRIFELM-------RPGGHLSDY-RLKSAGV 114
Query: 206 RCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA----IAEFAIANL 261
+ +++G++AE+++ + + + TGGSYSVA ++++++H P P + A
Sbjct: 115 KVNIVGMAAELYVARAVSKRTGGSYSVATHAVQVRDMVLKHTSPSPVEEGEGGKEKPAAG 174
Query: 262 IKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLAR 321
+ +GFP+++ G++ G+ CPRC V E+P DC +CGL+L+SS HLAR
Sbjct: 175 MWVGFPRKS-YGALG------------GWQCPRCMDVVKEIPADCGLCGLKLLSSSHLAR 221
Query: 322 SYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKH-FCL 380
SYHHLFP+ F E+ + S STC GC V K KH FC
Sbjct: 222 SYHHLFPVQSFHELED---EEGPATSTSTCGGCG-------------VLLGKESKHVFCG 265
Query: 381 ECDIYIHESLHNCPGCE 397
CD +IHE LH CPGCE
Sbjct: 266 LCDGFIHEMLHVCPGCE 282
>gi|313239111|emb|CBY14088.1| unnamed protein product [Oikopleura dioica]
Length = 369
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 125/403 (31%), Positives = 181/403 (44%), Gaps = 61/403 (15%)
Query: 19 DEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD------- 71
DE + + G WE Y +R+WEAL+ED++G L +SA ++RL
Sbjct: 2 DEGGDKHSGYR-WEGGY--ERTWEALREDDTGALIS-GSSAAKRLFAKKRLAQEAGQRIH 57
Query: 72 --RSLVATTARIQKAAEMDFR----PSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDG 125
R V + A+ D R P+R + ++ FV +FF PL Q+ LV +++
Sbjct: 58 IVRHCVLALDLSRSMADPDLRIDRYPNRAGCAVRSLKEFVPKFFASCPLGQLALVILQNK 117
Query: 126 VANCLTDLGGSPESHIKAL----MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLIL 181
AN + LGGS +KAL + G S+ N + + +L+ + + +RE++ +
Sbjct: 118 RANIVVPLGGSEARLLKALNDIEVKGFKTGGQCSMVNGIAASKSMLNAVGEHSNREIIFV 177
Query: 182 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 241
+L+T D TI+ IRCSV+ LSAE+ I K L + T G Y V LD +
Sbjct: 178 VGSLNTIDVTSPFATIETVANEGIRCSVVSLSAEVNIWKKLAERTDGKYFVPLDPIDVSD 237
Query: 242 LIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCE 301
+E PP + L+KMGFPQ V
Sbjct: 238 K-LEELSRPPVESSSRQGVLVKMGFPQ------------------------------VKA 266
Query: 302 LPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP--------LCLNDPRNRSRSTCFG 353
+PT C +C L LVS+ HLAR YHHLFP + P L L + C G
Sbjct: 267 IPTLCDVCKLSLVSAAHLARCYHHLFPPSSVTPSIPEQSGEEIDLELERSQFEKIGPCVG 326
Query: 354 CQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C + +S + +V C KC C ECD +I E LH+CPGC
Sbjct: 327 CNYAPISV-EEGRQFVVCDKCLNSLCGECDGFIDEHLHSCPGC 368
>gi|365759512|gb|EHN01295.1| Ssl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 303
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/259 (37%), Positives = 153/259 (59%), Gaps = 22/259 (8%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNG--GLEAWERSYADDRSWEALQEDESGFLRPIDNSA 59
+ +R R +G+ ++++ + NL G G AWE RSW+ ++ D+ G + + ++
Sbjct: 47 SQGDRDR-HGQRKKKKRLSNRNLQGSNGGYAWEDEIK--RSWDLVKVDDEGDMASL-VAS 102
Query: 60 FYHAQYRRRLRD----------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFF 109
A+ +R + RSL+ T + E D RPSR A++ + FV EFF
Sbjct: 103 IVEARKKRTAKKNITPYQRGIIRSLILTLDCSEAMLEKDLRPSRHAMIIQYAIDFVHEFF 162
Query: 110 DQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLL 167
DQNP+SQ+G++ +++G+A ++ + G+P+ HI AL + K G+ SLQNAL++ +GLL
Sbjct: 163 DQNPISQMGIIIMRNGLAQLVSQVSGNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLL 222
Query: 168 SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG 227
+P++ REVLI++ +LST DPGDI +TI KIR V+GLSA++ ICK LC+ T
Sbjct: 223 LPVPAHCTREVLIVFGSLSTTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATN 282
Query: 228 ----GSYSVALDESHFKEL 242
Y + LDE+H KEL
Sbjct: 283 YGDESFYKILLDETHLKEL 301
>gi|323347610|gb|EGA81877.1| Ssl1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 302
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 140/234 (59%), Gaps = 20/234 (8%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSL 74
NGG AWE RSW+ ++ D+ G + + ++ A+ +R + RSL
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASL-VASIVEARKKRTAKKNITPYQRGIIRSL 126
Query: 75 VATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ T + E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ +
Sbjct: 127 ILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVS 186
Query: 135 GSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGD
Sbjct: 187 GNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGD 246
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKEL 242
I +TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL
Sbjct: 247 IHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKEL 300
>gi|403222976|dbj|BAM41107.1| uncharacterized protein TOT_030000370 [Theileria orientalis strain
Shintoku]
Length = 468
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 117/421 (27%), Positives = 201/421 (47%), Gaps = 51/421 (12%)
Query: 18 EDEDDNLNGGLEAWERSYADDRSWEAL--QEDESGFLRPIDNSAFYHAQ----------- 64
++E+D+ AWE+ + D+SWE L ++ E F++P S Y
Sbjct: 55 KNENDDEAYQQYAWEQDF--DKSWEQLVDKDGELQFIKP--QSRIYSEPEGENEHPSESL 110
Query: 65 --YRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 122
+R R++V + E DF+P R+ ++ FV++ F + P++Q+G+V +
Sbjct: 111 DVISKRGIIRNVVILFDMSETMLEKDFKPDRLYCSFGALKEFVKDLFSKGPITQLGMVVM 170
Query: 123 KDGVANCLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLI 180
++ VAN + LG +PE ++ L L G G SSLQN L++ +L ++PSY REVL+
Sbjct: 171 RNKVANLICQLGTNPEEQLELLGNSLKEGADGPSSLQNGLEMCLNMLYELPSYSTREVLV 230
Query: 181 LYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAE----MFICKHLCQDTGGSYSVALDE 236
++ + T D G+I+ T++K K++ + + I LS E +F K + + +
Sbjct: 231 IFGSNRTLDAGNILVTLEKLKQNNLTINSISLSPENRRQLFGGKGCKSPETPTQQLHITS 290
Query: 237 SHFKELIMEHAPPPPAIAEFAIAN---------LIKMGFPQRAGEGSISICSCHKEVKVG 287
+ + + P +I + + L+K+ FP ++S+C CH + V
Sbjct: 291 TMVSTMSDQIYMLPVSIVWNKLISLRKKWMEPVLLKVAFPPLKKTATVSLCVCHSSL-VN 349
Query: 288 VGYTCPRCKARVCELPTDCRICGLQLV-----SSPHLARS--YHHLFPIAPFDEVTPLCL 340
Y CP+C ++ C +PT C++ L+ ++ H S YHH F +T
Sbjct: 350 KAYICPQCHSKSCYIPTKCKVRTFILIGAIDHNNRHAVESTWYHHQIFQGLF--ITSYL- 406
Query: 341 NDPRNRSRSTCFGCQQSLLSSGN-KPGLYVACPKCKKHFCLECDIYIHESLHNCPGCESL 399
P+N S+ + Q SS N + + CP C FC C++YI E LH CP C L
Sbjct: 407 --PKNSSK---YENTQVTCSSCNLRNNVGFRCPSCDSWFCEYCNVYIQEELHQCPMCLFL 461
Query: 400 R 400
+
Sbjct: 462 K 462
>gi|119182598|ref|XP_001242425.1| hypothetical protein CIMG_06321 [Coccidioides immitis RS]
Length = 364
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 128/224 (57%), Gaps = 12/224 (5%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRR------RLRDRSLVATTARIQKAAEMDFRPS 92
R+WE+L E G + + +R R R L+ +E D RP+
Sbjct: 68 RTWESLVEGADGTISSTVEGLLEAGKRKRDTTPLQRGIIRHLILVLDLSIAMSEKDVRPT 127
Query: 93 RMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGC 150
R + + + FV E+F+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ +
Sbjct: 128 RYLLTLRYAQEFVLEYFEQNPISQLGIIGMRDGLAVRISDMSGNPSEHILAIQALRTRDP 187
Query: 151 SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVI 210
+G SLQNAL++ +G L PS+G REVLI++ AL + DPGDI +TI KIR V+
Sbjct: 188 TGLPSLQNALEMARGALFHTPSHGTREVLIIFGALLSSDPGDIHKTITSLVTDKIRVGVV 247
Query: 211 GLSAEMFICKHLCQDTGG----SYSVALDESHFKELIMEHAPPP 250
GL+AE+ IC+ +C T Y VAL+E HF+EL+ME PP
Sbjct: 248 GLAAEVAICREICSKTNAGDDSGYGVALNEQHFRELMMEITTPP 291
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 371 CPKCKKHFCLECDIYIHESLHNCPGCES 398
C C HFC++CD++ HE +HNCPGC+S
Sbjct: 309 CTVCHNHFCIDCDVFAHEIVHNCPGCQS 336
>gi|401825920|ref|XP_003887054.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon hellem
ATCC 50504]
gi|392998212|gb|AFM98073.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon hellem
ATCC 50504]
Length = 340
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 180/371 (48%), Gaps = 43/371 (11%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDF 89
+WE+ Y R+WE + + ++ FY + +R ++ + + + DF
Sbjct: 6 SWEQEYK--RTWEDRNDRKVNEFN-METETFYSNNRKGIVRHLHVIVDVS--EAIDKSDF 60
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLG 149
P+ VA+ +E F+ F+++NPLS + ++ +D ++ + + I A +G+ G
Sbjct: 61 LPTFRTNVARILEDFIPSFYNENPLSTLSFLSTRDVCVKYISSM----DMDIHAFLGQTG 116
Query: 150 CSGDSSLQNALDLVQGLLSQIPSYGH-REVLILYSALSTCDPGDIMETIQKCKESKIRCS 208
S SL N L +G + + + H +E+L++ ++ ST DP E + + K I+
Sbjct: 117 -SKWFSLLNGL---EGSIEIMENTMHVKEILVIVASTSTRDPHGYTEVLNRLKTHNIKVH 172
Query: 209 VIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEF--AIANLIKMGF 266
I L E+ + K + + TGG + V +D H ++ E + P +F +L+K+GF
Sbjct: 173 FISLCGEVTLYKSISKATGGRFYVPIDVGHLSMIMKELSHP----TDFNGTTLSLVKIGF 228
Query: 267 PQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 326
P E S+ C+CH EVK VGY CP CK VC LP C IC QLVS+ +L++S +
Sbjct: 229 PLPTMESSV--CACHLEVK-SVGYECPVCKTMVCSLPISCPICNTQLVSTLNLSKSLRFI 285
Query: 327 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYI 386
+P+ PF E R+ C CQ G Y C CK +C C+ ++
Sbjct: 286 YPLKPFIE-----------RAEDACRICQNK--------GAY-QCDLCKSTYCSYCNGFV 325
Query: 387 HESLHNCPGCE 397
H +L C CE
Sbjct: 326 HSTLSFCIYCE 336
>gi|396081175|gb|AFN82793.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon
romaleae SJ-2008]
Length = 340
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 181/371 (48%), Gaps = 43/371 (11%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDF 89
+WE+ Y R+WE + D+ ++ FY + +R ++ + + + DF
Sbjct: 6 SWEQEY--KRTWED-RSDKKVHEFNMEAETFYSNNRKGIVRHLHVIIDVS--EAIDKSDF 60
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLG 149
P+ VA+ +E F+ F+++NPLS + ++ +D ++ + + + A +G+ G
Sbjct: 61 LPTFRTNVARILEEFIPSFYNENPLSTLSFLSTRDVCVKYISSM----DMDVHAFLGQTG 116
Query: 150 CSGDSSLQNALDLVQGLLSQIPSYGH-REVLILYSALSTCDPGDIMETIQKCKESKIRCS 208
S SL N L +G + + + H +E+L++ ++ ST DP E + K K I+
Sbjct: 117 -SKWFSLLNGL---EGSIEIMRNTMHVKEILVIVASTSTRDPHGYTEVLNKLKTYNIKVH 172
Query: 209 VIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEF--AIANLIKMGF 266
I L E+ + K + + TGG + V +D H ++ E + P +F +L+K+GF
Sbjct: 173 FISLCGELTLYKSISKATGGRFYVPVDVGHLSMIMKELSHP----TDFNGTTLSLVKIGF 228
Query: 267 PQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 326
P E S+ CSCH E+K +GY CP CK VC LPT C ICG QLVS+ +L++S L
Sbjct: 229 PLPTIESSV--CSCHLEMK-SIGYECPVCKTMVCSLPTSCPICGTQLVSTLNLSKSLRFL 285
Query: 327 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYI 386
+P+ PF E ++ C C+ G Y C CK FC C+
Sbjct: 286 YPLKPFIE-----------KAEGICRICRDK--------GAY-QCELCKSTFCSYCNGLA 325
Query: 387 HESLHNCPGCE 397
H +L C CE
Sbjct: 326 HNTLSFCIYCE 336
>gi|19074105|ref|NP_584711.1| similarity to SUPPRESSOR OF STEM LOOP PROTEIN 1 [Encephalitozoon
cuniculi GB-M1]
gi|19068747|emb|CAD25215.1| similarity to SUPPRESSOR OF STEM LOOP PROTEIN 1 [Encephalitozoon
cuniculi GB-M1]
gi|449328973|gb|AGE95248.1| suppressor of stem loop protein 1 [Encephalitozoon cuniculi]
Length = 340
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 112/371 (30%), Positives = 177/371 (47%), Gaps = 43/371 (11%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDF 89
+WE+ Y R+WE + + ++ A Y + +R ++ + + + DF
Sbjct: 6 SWEQEY--KRTWEDRNDRKVNEFN-LETEAPYSNNRKGIVRHLHIIIDVS--EAIDKSDF 60
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLG 149
P+ A V K +E F+ F+ +NPLS + ++++D S + I A +G+ G
Sbjct: 61 LPTFRANVTKVLEGFIPSFYSENPLSTLSFLSIRD----VCVKYTSSMDIDIHAFLGQTG 116
Query: 150 CSGDSSLQNALDLVQGLLSQIPSYGH-REVLILYSALSTCDPGDIMETIQKCKESKIRCS 208
S SL N L +G + + + H +E+L++ ++ ST DP E + K + I+
Sbjct: 117 -SKWFSLLNGL---EGSIEVMKNTMHVKEILVIVASTSTRDPHGYAEVLAKLRAYNIKVH 172
Query: 209 VIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEF--AIANLIKMGF 266
I L E+ + K + + T G + V +D H ++ E + P +F +L+K+GF
Sbjct: 173 FISLCGEITLYKSISKATEGRFYVPVDAGHLSAIMRELSHP----TDFNGTKLSLVKIGF 228
Query: 267 PQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 326
P E S+ C+CH EVK G GY CP CK VC LP C IC QLVS+ +L++S L
Sbjct: 229 PSPMMEPSV--CACHLEVK-GAGYECPVCKTMVCSLPISCPICSTQLVSTLNLSKSLRFL 285
Query: 327 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYI 386
+P+ PF E ++ TC CQ G Y C CK FC C+ I
Sbjct: 286 YPLRPFVE-----------KAEGTCRVCQGK--------GAY-QCELCKSTFCSYCNRLI 325
Query: 387 HESLHNCPGCE 397
H +L C CE
Sbjct: 326 HNTLSFCIYCE 336
>gi|303388880|ref|XP_003072673.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon
intestinalis ATCC 50506]
gi|303301815|gb|ADM11313.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit SSL1 [Encephalitozoon
intestinalis ATCC 50506]
Length = 340
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 176/371 (47%), Gaps = 43/371 (11%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDF 89
+WE+ Y R+WE + + + FY + +R ++ + + + DF
Sbjct: 6 SWEQEY--KRTWEDRSDRKVNEFNT-ETGIFYSNNRKGIVRHLHVIIDVS--EAIDKSDF 60
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLG 149
P+ VAK +E F+ F+ +NPLS + ++V+D ++ + + I A +G+ G
Sbjct: 61 LPTFRTNVAKILEGFIPSFYSENPLSTLSFLSVRDVCVKYISSM----DMDIHAFLGQTG 116
Query: 150 CSGDSSLQNALDLVQGLLSQIPSYGH-REVLILYSALSTCDPGDIMETIQKCKESKIRCS 208
S SL N L +G + I + H +E+L++ ++ ST DP E + K K I+
Sbjct: 117 -SKWFSLLNGL---EGSVEIIKNTTHVKEILVIVASTSTRDPHGYTEVLTKLKVHNIKVH 172
Query: 209 VIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEF--AIANLIKMGF 266
I L E+ + K + + T G + V +D H ++ E + P +F +L+K+GF
Sbjct: 173 FISLCGEVTLYKSISKATEGRFYVPVDVGHLSIIMKELSHP----TDFNGTTLSLVKIGF 228
Query: 267 PQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHL 326
P E S+ C+CH E+K GY CP CK VC LP C IC QLVS+ +L++S L
Sbjct: 229 PLPVIEPSV--CACHLEMK-SAGYECPVCKTMVCSLPVSCPICNTQLVSTLNLSKSLRFL 285
Query: 327 FPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYI 386
+P+ PF E + C CQ G Y C CK FC C+ ++
Sbjct: 286 YPLKPFIE-----------KEGKMCRICQSK--------GGY-QCELCKSIFCNSCNGFV 325
Query: 387 HESLHNCPGCE 397
H +L C CE
Sbjct: 326 HNTLSFCIYCE 336
>gi|359474618|ref|XP_003631495.1| PREDICTED: uncharacterized protein LOC100853435 [Vitis vinifera]
Length = 235
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/94 (75%), Positives = 83/94 (88%)
Query: 101 VEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNAL 160
++ +EFFDQ+P SQIGLVT+KDG+A CLTDLGGS +SH+KALMGKL CSGDSSLQNAL
Sbjct: 142 LQTMKQEFFDQDPFSQIGLVTIKDGLAPCLTDLGGSIDSHVKALMGKLECSGDSSLQNAL 201
Query: 161 DLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM 194
+LV+G L+ IPSYG+REVLILYSALS CD GDIM
Sbjct: 202 NLVRGYLNLIPSYGYREVLILYSALSACDTGDIM 235
>gi|76157401|gb|AAX28337.2| SJCHGC09266 protein [Schistosoma japonicum]
Length = 234
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 24/223 (10%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFY--HAQYRRRLRDRSLVATTARI------- 81
WE Y +++W A++EDESG L + H Q R++ R R V +T +
Sbjct: 17 WESGY--EKTWNAIREDESGRLVTTLEQLIHDAHTQIRKK-RKRIGVGSTGFVRLGMMRH 73
Query: 82 --------QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDL 133
Q E D +P+R+ K FVRE+FDQNP+SQ+G++ D A LT+L
Sbjct: 74 LFLIIDLSQAMNEQDLKPNRLICTIKAACTFVREYFDQNPISQLGIIVTSDRRAERLTEL 133
Query: 134 GGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPG 191
G+P H+ AL + C+G+ SLQNAL L + L + H E+++L ++L+TCDPG
Sbjct: 134 SGNPRPHLAALQSLYSRTCAGEPSLQNALLLAESRLKY--TIHHNEIVVLIASLTTCDPG 191
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVAL 234
DI +TI+ ++I CSVI L+ E+F+ + L Q T G++ V +
Sbjct: 192 DIHQTIKSLSSNRIHCSVISLAVEVFVYRALAQFTQGTFHVIM 234
>gi|326935424|ref|XP_003213771.1| PREDICTED: general transcription factor IIH subunit 2-like, partial
[Meleagris gallopavo]
Length = 208
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 113/191 (59%), Gaps = 8/191 (4%)
Query: 61 YHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ--IG 118
+H Q R + R L + + D +P+R+ K +E FV E+FDQNP+SQ G
Sbjct: 4 HHGQVRLGMM-RHLYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQDPPG 62
Query: 119 LVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHR 176
V + + G+P+ HI AL + C G+ SL N+L+L L +P + R
Sbjct: 63 HVAATE---ERRARMPGNPKKHIAALKKAVDMNCQGEPSLYNSLNLAMQTLKHMPGHTSR 119
Query: 177 EVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDE 236
EVLI++S+L+TCDP +I E I+ K KIR SVIGLSAE+ +C L ++TGG+Y V LDE
Sbjct: 120 EVLIVFSSLTTCDPANIYELIKCLKAVKIRVSVIGLSAEVRVCTVLTRETGGTYHVILDE 179
Query: 237 SHFKELIMEHA 247
SH+KEL+M H
Sbjct: 180 SHYKELLMHHV 190
>gi|367054704|ref|XP_003657730.1| hypothetical protein THITE_2123698 [Thielavia terrestris NRRL 8126]
gi|347004996|gb|AEO71394.1| hypothetical protein THITE_2123698 [Thielavia terrestris NRRL 8126]
Length = 282
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 116/206 (56%), Gaps = 19/206 (9%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL-RD---------RSLVATTA 79
AWE RSWE + E E G I A A+ RRRL RD R L+
Sbjct: 59 AWEDI---KRSWENVVEAEDG---SITIEALLEAEKRRRLMRDTTPLQRGIIRHLMLVLD 112
Query: 80 RIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPES 139
AE D P+R + FVRE+F+QNP+SQ+G++ ++DGVA ++D+GG+P
Sbjct: 113 MSFAMAEKDLLPTRYLLTLNYAVDFVREYFEQNPISQMGIIAMRDGVAVRISDMGGNPAE 172
Query: 140 HIKALMGKLGCS---GDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMET 196
HI+ L G+ SLQNAL++ +G L PS+G REVLI+Y AL + DPGDI +T
Sbjct: 173 HIEKLRTWAAQGEPQGNPSLQNALEMCRGALFHTPSHGTREVLIIYGALLSSDPGDIHDT 232
Query: 197 IQKCKESKIRCSVIGLSAEMFICKHL 222
I +IR S++GLSA++ IC L
Sbjct: 233 IANLITDRIRVSIVGLSAQVAICAEL 258
>gi|425774738|gb|EKV13039.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Penicillium
digitatum PHI26]
gi|425780731|gb|EKV18732.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Penicillium
digitatum Pd1]
Length = 296
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 122/233 (52%), Gaps = 29/233 (12%)
Query: 15 EEEEDEDD-------------NLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
E EDEDD GG E WE S R+WE L E G +
Sbjct: 11 EVTEDEDDLQVTRGDISRAKRKQRGGAE-WELS----RTWETLVEGADGTINSTVEGLLE 65
Query: 62 HAQYRRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQN 112
+ +R L+D R L+ Q +E D RP+R + + + FVREFF+QN
Sbjct: 66 AGKRKRLLKDTTPLQRGIIRHLILILDLSQSMSEKDLRPTRYLLALRYAQEFVREFFEQN 125
Query: 113 PLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQI 170
P+SQ+G++ ++DG+A ++D+ G+P H+ A+ + G SLQN L++ +G L
Sbjct: 126 PISQLGVLGLRDGLALRVSDMSGNPTGHLTAIQALKMQDPKGLPSLQNGLEMARGALFHT 185
Query: 171 PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLC 223
PS+G REVL +Y +L + DPGDI +TI KIR ++GL+A++ IC+ L
Sbjct: 186 PSHGTREVLFIYGSLLSSDPGDIHQTIDALISDKIRVGIVGLAAQVAICRELS 238
>gi|145473807|ref|XP_001462567.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124430407|emb|CAK95194.1| unnamed protein product [Paramecium tetraurelia]
Length = 361
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 162/348 (46%), Gaps = 33/348 (9%)
Query: 57 NSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQ 116
++ F AQ +R+ ++ R K + DF+PSR+AV + + AF+ +F + NPLSQ
Sbjct: 38 DAQFLIAQNPLIMRNLLIIIDITRSSKIS--DFKPSRLAVALQFLPAFIEQFLECNPLSQ 95
Query: 117 IGLVTVKDGVANCLTDLGGSPESHIKALMGKL------GCSGDSSLQNALDLVQGLLSQI 170
IG+ ++ + D S +IK + + G S + LQ AL + S
Sbjct: 96 IGIAVAEEYRCKTILDFTSS-WVNIKQYLSTIHSINEAGFSMAACLQTALHV----FSTT 150
Query: 171 PSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY 230
+ +L++ ++ + D D+ E ++C+ + I+ +VI + + + Q T G Y
Sbjct: 151 QLHAQSSILVVTTSTYSDDKLDLNEWSERCQSAAIQINVISFTGSINQLIKITQATDGQY 210
Query: 231 SVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGY 290
L+E F + I + P + I L+K+GFPQ+ ++C CH E+ V Y
Sbjct: 211 LCPLNEFQFSQEIQKFVSPQESKNHKMITQLVKIGFPQKLIVSQPTLCQCHLEI-VYNFY 269
Query: 291 TCPRCKARVCELPTDCRICGLQLVSSPHLARS--YHHLFPIAPFDEVTPLCLNDPRNRSR 348
CP C ++VC P C IC +V + RS Y+ L E+T ND +
Sbjct: 270 KCPVCYSKVCSPPLLCPICSTWIVLPHQILRSDGYNTLGVF----EIT----NDGLDH-- 319
Query: 349 STCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C GC + ++ C +CK FCL+CDI IH CPGC
Sbjct: 320 -VCSGCLEP------TTVIHSTCERCKNFFCLDCDILIHSKFKVCPGC 360
>gi|123469529|ref|XP_001317976.1| transcription factor ssl1 family protein [Trichomonas vaginalis G3]
gi|121900723|gb|EAY05753.1| transcription factor ssl1 family protein [Trichomonas vaginalis G3]
Length = 394
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 118/407 (28%), Positives = 184/407 (45%), Gaps = 64/407 (15%)
Query: 28 LEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATT 78
++ W R D W+ L E+ LR + + + ++ ++ + RSLV
Sbjct: 10 VKRWGRR---DNIWDNLGVGENNDLRLVQETEQWDSEVEKKKKALLNASRGLIRSLVLIL 66
Query: 79 ARIQKAAEMD-FRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSP 137
EM F +RM ++ Q F+ +FF QNPLSQ+ ++ + LT L +
Sbjct: 67 DLSTNGLEMRLFNQNRMKLIQDQTIDFINDFFVQNPLSQLSILATYESTCRILTPLSCNV 126
Query: 138 ESHIKAL--MGKLGCSGDSSLQNALDLVQGLL---------SQIPSYGHREVLILYSALS 186
+ H+K + + G+ SL+++L + +L +QI + +EVLI+Y +L+
Sbjct: 127 QDHVKKIKSLSLEDHGGEPSLESSLSIATAILGNGEKNPGLAQIST--TKEVLIVYGSLT 184
Query: 187 TCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEH 246
TCD I +T+ ++SKI+ S+IGL A++F+ + + +T G Y V + H ++
Sbjct: 185 TCDNSPIYKTLNLVRDSKIKVSIIGLGAKVFVLEKIAAETKGEYFVPVSIEHLHDIFHSF 244
Query: 247 APPPPAIAEFAIAN---LIKMGFPQRAGEGSISI-----------CSCHKEVKVGVGYTC 292
PP EF + I GF A S + E GY C
Sbjct: 245 VIPP----EFMLNQRRYFIPFGFASLASPTVPSFDVFKLMSNPPSKTNKPETPQYGGYQC 300
Query: 293 PRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPF-DEVTPLCLNDPRNRSRSTC 351
PRC RV +P C +C L+S +L R+ HL P+ F E +P C
Sbjct: 301 PRCGTRVFSIPCFCPVCRDFLISPAYLKRTVCHLTPVPLFVSEESP---------DTDHC 351
Query: 352 FGCQQSLLSSGNKPGLYVAC--PKCKKHFCLECDIYIHESLHNCPGC 396
FGC N P + C PKC K FC +CD +IHE L +CPGC
Sbjct: 352 FGC--------NMPFEEIPCRCPKCNKCFCKKCDPFIHEVLQSCPGC 390
>gi|301097433|ref|XP_002897811.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262106559|gb|EEY64611.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 164
Score = 130 bits (328), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 98/174 (56%), Gaps = 27/174 (15%)
Query: 240 KELIMEHAPPPPAIAEFA--IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKA 297
K L+ P P +A A A L++MGFPQR G++S+C+CH+ VGY CPRCK+
Sbjct: 2 KRLMTAFTFPSPTVATAASRFATLVEMGFPQRR-SGALSLCTCHQAFTT-VGYLCPRCKS 59
Query: 298 RVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDE--------------VTPLCLNDP 343
+ C+LPT C++C L LVSSPHLARSYHHLFP+A F + ++P
Sbjct: 60 KSCDLPTTCQVCNLPLVSSPHLARSYHHLFPVAKFAQHLLRSGATGEKGAKISP------ 113
Query: 344 RNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGCE 397
+ CFGC L G C C+ FC ECD Y+H+SLHNCPGC
Sbjct: 114 -ELVQKKCFGCLLLLGLDGEGAAY--ECATCQNVFCSECDTYVHDSLHNCPGCS 164
>gi|321447765|gb|EFX61168.1| hypothetical protein DAPPUDRAFT_340521 [Daphnia pulex]
Length = 167
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 104/182 (57%), Gaps = 23/182 (12%)
Query: 145 MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 204
M C+G++SLQN+ + L +P++ REVL L L + I+ KE+
Sbjct: 7 MKDTSCNGETSLQNSFERAMCGLKNMPAHSSREVLTLLVILVIYK-----KKIKSFKENN 61
Query: 205 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKM 264
IR S+IGL+AE+ IC+ + + TGG+Y+V LD+ + KE ++ + P A+A A+L+KM
Sbjct: 62 IRVSIIGLAAEVRICQEIAKRTGGTYNVLLDDHYLKETLILNQVQPLAVAGTMEASLVKM 121
Query: 265 GFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYH 324
GF + GY CP+ +R CELP +C+ CGL LVS+PHLARSYH
Sbjct: 122 GFSNNS------------------GYNCPQSGSRYCELPVECKQCGLTLVSAPHLARSYH 163
Query: 325 HL 326
L
Sbjct: 164 LL 165
>gi|440493575|gb|ELQ76030.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit SSL1 [Trachipleistophora
hominis]
Length = 334
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/373 (27%), Positives = 174/373 (46%), Gaps = 49/373 (13%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL--RDRSLVATTARIQKAAEM 87
+WE+ Y R+WE L EDE +A Y++ + ++ ++A I+
Sbjct: 6 SWEKQYK--RTWENLNEDEEKNTSLEKKLHHTYAPYKKGIIRHFHIIIDSSASIELN--- 60
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 147
DF PS V ++ F+++F+D+NP+S + L+ ++ C + + S + G
Sbjct: 61 DFLPSFRYHVTTKLNHFIKKFYDENPISVLSLLIYRNN--KCESYIVLDRLSETEGFFGV 118
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 207
G +G+ SL N+L++ L++ +E+L++ +L T D +E ++ K+ KI
Sbjct: 119 AG-TGEFSLINSLNVSLEFLNRDDYI--KEILVITGSLYTID----IEELRSFKDIKIH- 170
Query: 208 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP 267
I AE++ K + + T G Y V ++ S L +E P +I + NL+K+GFP
Sbjct: 171 -FIAFRAEVYFFKDVAEKTHGKYYVPVEMSDI-SLFLESFCMPNSINSGSAHNLLKLGFP 228
Query: 268 QRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLF 327
Q G + C + K G Y CP C +VC LP C +C QLV+S LA+S ++ +
Sbjct: 229 Q-VLTGDLVCACCFRYSKKG--YECPVCHTKVCNLPIKCPVCKTQLVTSNILAQSLYYCY 285
Query: 328 PIAPFDE---VTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDI 384
P+ F++ +C D R+R C KC +C C
Sbjct: 286 PLEDFEKAGGACRVCGGDGRDR------------------------CKKCGSIYCERCSY 321
Query: 385 YIHESLHNCPGCE 397
+IH L+ C C+
Sbjct: 322 FIHNDLYFCIYCD 334
>gi|451994856|gb|EMD87325.1| hypothetical protein COCHEDRAFT_1197444 [Cochliobolus
heterostrophus C5]
Length = 718
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 101/360 (28%), Positives = 147/360 (40%), Gaps = 81/360 (22%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD-----GVANCLTDLGGSPESH 140
E D RP+R + + ++REFF+QNP+SQ+ ++ + D G +N L H
Sbjct: 116 EKDMRPNRFITMINYTQDYIREFFEQNPISQMSVLGMHDECSRVGESNTL--------PH 167
Query: 141 IKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKC 200
++ + G L+ + S R I D GD E
Sbjct: 168 AQSWHTR----GHRRLRQPAE----------SGPWRHSPICKGVCEGPDTGDESEYTIAT 213
Query: 201 KESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN 260
+ +R ++ + I + L D + AP A + + A
Sbjct: 214 DQEMLRELLLATTTPPVIRQPLVTD-------------------KTAPATTAQSSESAAA 254
Query: 261 LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLA 320
L+ MGFP R E +++C+CH + +G GYTC RC A+VC LP C C L L+ S HLA
Sbjct: 255 LMMMGFPSRVVEDQLTMCACHGNLTMG-GYTCSRCSAKVCSLPITCPSCQLTLLLSTHLA 313
Query: 321 RSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC-----------------QQSLLSSGN 363
RSYHHLFP+ + V+ + R C GC QQ +
Sbjct: 314 RSYHHLFPLRNWATVS---WSRAREMGSKQCVGCLAAFSNPPSNAKENGEAQQDTEAKVT 370
Query: 364 K-------------PGLYVACPKCKKHFCLECDIYIHESLHNCPGCESLRHSNPIVANEG 410
K G Y C C+ HFC++CD++ H LHNCPGC N + G
Sbjct: 371 KKHDDDSEEQKASESGRY-ECRACESHFCIDCDMFAHMVLHNCPGCLGRLDPNTAATSNG 429
>gi|429962932|gb|ELA42476.1| hypothetical protein VICG_00575 [Vittaforma corneae ATCC 50505]
Length = 335
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 175/369 (47%), Gaps = 44/369 (11%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVA--TTARIQKAAEM 87
+W + + RSWE ++ RP+ ++ + LV T+A I+K+
Sbjct: 7 SWTQEFR--RSWE---DNARLIRRPLPTYTKPFNTNKKNIIRHLLVCIDTSASIEKS--- 58
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 147
D+ P+ +++ + FV +F NPLS + +T + S E + K ++
Sbjct: 59 DYVPTVRNILSNTIPRFVSQFKISNPLSILSFLTCRSVFEK------YSREFNPKIMLNT 112
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 207
+G SG+ S N L ++ S ++EVL++ S++ T D G + K+ I+
Sbjct: 113 VG-SGNFSFLNCLKSAIEMIRT--STYNKEVLVITSSIGTKDTGAYEQVFSDIKKYNIKV 169
Query: 208 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP 267
+VI + E+ + K + + + G + V LD HF+ L+ + P + A + L+K+GFP
Sbjct: 170 NVISICGEVTLFKKISELSNGVFKVPLDSFHFEILLHQFTEPLECLE--ATSCLVKLGFP 227
Query: 268 QRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLF 327
Q + C CH + + + Y CP CKA +C LP +C IC QLVS ++++SY+ ++
Sbjct: 228 QITSNSGL--CVCHLKFEHSL-YECPVCKAYICCLPCECPICSTQLVSPLNISKSYYFIY 284
Query: 328 PIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIH 387
P+ PF +++ + R G L C +C+ H C +C+ ++H
Sbjct: 285 PLKPF-------ISNENGKCRKC--GRDAKFL-----------CEECQNHLCEKCNKFMH 324
Query: 388 ESLHNCPGC 396
E L C C
Sbjct: 325 EDLGFCIFC 333
>gi|429965596|gb|ELA47593.1| transcription factor ssl1, partial [Vavraia culicis 'floridensis']
Length = 381
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 104/370 (28%), Positives = 176/370 (47%), Gaps = 43/370 (11%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRL--RDRSLVATTARIQKAAEM 87
+WE+ Y R+WE L EDE + +A Y++ + ++ ++A I+
Sbjct: 53 SWEKQYK--RTWENLNEDEEKNVSLEKKLHHTYAPYKKGIIRHFHIIIDSSASIELN--- 107
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 147
DF PS V ++ F+++F+D+NP+S + L+ ++ C + S + G
Sbjct: 108 DFLPSFRYHVTTKLNHFIKKFYDENPISILSLLIYRNN--RCENYIVLDRMSETENFFGV 165
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 207
G +G+ SL N+L++ LS+ +E+L++ +L T D E ++ ++ K+
Sbjct: 166 AG-TGEFSLMNSLNVSLDFLSRDDHI--KEILVVTGSLYTID----FEEMRAFRDIKVH- 217
Query: 208 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP 267
I L AE++ K++ Q T G Y V ++ S L +E P +I + NL+K+GFP
Sbjct: 218 -FIALRAEVYFFKNIAQKTHGKYYVPVEVSDI-SLFLESFCMPNSINSSSALNLLKLGFP 275
Query: 268 QRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLF 327
Q A G + C + K G Y CP C +VC LP C IC QLV+S L++S ++ +
Sbjct: 276 Q-ALTGDLVCACCFRCSKKG--YECPVCHTKVCNLPIKCPICKTQLVTSNILSQSLYYCY 332
Query: 328 PIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIH 387
P+ F++ +C C G G+ C KC +C C +IH
Sbjct: 333 PLEDFEKSNGVC---------RVCGG-------DGSD-----QCKKCMSVYCEGCCYFIH 371
Query: 388 ESLHNCPGCE 397
L+ C C+
Sbjct: 372 NDLYFCIYCD 381
>gi|323353892|gb|EGA85745.1| Ssl1p [Saccharomyces cerevisiae VL3]
Length = 273
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 117/200 (58%), Gaps = 16/200 (8%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD----------RSL 74
NGG AWE RSW+ ++ D+ G + + ++ A+ +R + RSL
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASL-VASIVEARKKRTAKKNITPYQRGIIRSL 126
Query: 75 VATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ T + E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ +
Sbjct: 127 ILTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVS 186
Query: 135 GSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGD 192
G+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGD
Sbjct: 187 GNPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGD 246
Query: 193 IMETIQKCKESKIRCSVIGL 212
I +TI KIR G+
Sbjct: 247 IHQTIDSLVSEKIRVKGFGV 266
>gi|67528154|ref|XP_661887.1| hypothetical protein AN4283.2 [Aspergillus nidulans FGSC A4]
gi|40739631|gb|EAA58821.1| hypothetical protein AN4283.2 [Aspergillus nidulans FGSC A4]
Length = 277
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 11/188 (5%)
Query: 39 RSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARIQKAAEMDF 89
R+WE L E G + ++ +R L+D R ++ Q E D
Sbjct: 48 RTWETLVEGADGTISSTVGGLLEASKRKRLLKDTTPLQRGIIRHIILILDLSQSMMEKDL 107
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGK 147
RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ +
Sbjct: 108 RPTRYLLTLRYAQEFVREFFEQNPISQVGVIGLRDGLALRISDMSGNPTEHISAIQDLRS 167
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 207
G SLQN L++ +G L PS+G RE+ I++ +L + DPGDI +TI + KIR
Sbjct: 168 QDPKGLPSLQNGLEMARGALFHTPSHGTREIFIVFGSLLSSDPGDIHQTITTLIDDKIRV 227
Query: 208 SVIGLSAE 215
++GL+A+
Sbjct: 228 GIVGLAAQ 235
>gi|145532284|ref|XP_001451903.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419569|emb|CAK84506.1| unnamed protein product [Paramecium tetraurelia]
Length = 373
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/403 (25%), Positives = 175/403 (43%), Gaps = 63/403 (15%)
Query: 14 EEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRS 73
E EE+ + NG +Y D+ + + D + F AQ +R+
Sbjct: 13 EYEEKIRNHQTNG------HNYEQDKLHQKKESD----------AQFLIAQNPLIMRNLL 56
Query: 74 LVATTARIQKAAEMDFRPSRMAVVAKQV----------EAFVREFFDQNPLSQIGLVTVK 123
++ T + K + DF+PSR+AV + + ++F+ +F + NPLSQIG+ +
Sbjct: 57 IIIDTTKSSKVS--DFKPSRLAVALQFLPVKKHTIIHNQSFIEQFLEGNPLSQIGIAVAE 114
Query: 124 DGVANCLTDLGGSPESHIKALMGKL------GCSGDSSLQNALDLVQGLLSQIPSYGHRE 177
+ + D S +IK + + G S + LQ AL + S +
Sbjct: 115 EYKCKTILDFTSSC-VNIKQYLSTIHSINEAGFSMAACLQTALHV----FSSTQLHAQSS 169
Query: 178 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDES 237
+L + ++ + D D+ E +KC+ + I+ ++I + + + Q T G Y ++E
Sbjct: 170 ILFVTTSTYSDDKLDLNEWSEKCQSAAIQINMISFAGAIHQLIKITQATDGQYLCPINEF 229
Query: 238 HFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKA 297
F + I + P + I L+K+GFPQ+ ++C CH E+ Y CP C +
Sbjct: 230 QFSQEIQKFISPQESKNHKMITQLVKIGFPQKFIVSQPTLCQCHLEIIYNF-YKCPVCYS 288
Query: 298 RVCELPTDCRICGLQLVSSPHLARS--YHHL--FPIAPFDEVTPLCLNDPRNRSRSTCFG 353
+VC P C IC +V + RS Y+ L F I +ND + C G
Sbjct: 289 KVCSPPLLCPICSTWIVLPHQILRSDGYNTLGVFEI----------INDGLDH---ICQG 335
Query: 354 CQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C + ++ C +CK FCL+CD+ IH CPGC
Sbjct: 336 CLEP------TSVIHSTCERCKNFFCLDCDVLIHSKFKVCPGC 372
>gi|169596905|ref|XP_001791876.1| hypothetical protein SNOG_01225 [Phaeosphaeria nodorum SN15]
gi|160707395|gb|EAT90874.2| hypothetical protein SNOG_01225 [Phaeosphaeria nodorum SN15]
Length = 716
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 105/211 (49%), Gaps = 46/211 (21%)
Query: 228 GSYSVALDESHFKELIMEHAPPPPAIAEFAI----------ANLIKMGFPQRAGEGSISI 277
G Y++A D+ KEL++ PP I + A A L+ MGFP R E ++
Sbjct: 206 GEYTIATDQEMLKELLIATTTPP-VIRQTATTTDAPPPESAAALMMMGFPSRVVEDKPTM 264
Query: 278 CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP 337
C+CH + +G GYTC RC A+VC LP C C L L+ S HLARSYHHLFP+ + V+
Sbjct: 265 CACHGNLTMG-GYTCSRCSAKVCSLPITCPSCQLTLLLSTHLARSYHHLFPLRNWATVS- 322
Query: 338 LCLNDPRNRSRSTCFGC-----------------QQSLLSSGNK-------------PGL 367
+ R + C C +Q+L ++G+K G
Sbjct: 323 --WSRAREKGSKECVSCLSSFSKPPASDTERTQTEQNLETNGHKRDADDSEEQKASESGR 380
Query: 368 YVACPKCKKHFCLECDIYIHESLHNCPGCES 398
Y C C+ HFC++CD++ H LHNCPGC S
Sbjct: 381 Y-ECRACESHFCIDCDMFAHMVLHNCPGCLS 410
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 124
E D RP+R + + +VREFF+QNP+SQ+ ++ + D
Sbjct: 117 EKDMRPNRYITMINYAQDYVREFFEQNPISQMSVLGMHD 155
>gi|194383680|dbj|BAG59198.1| unnamed protein product [Homo sapiens]
Length = 203
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 105/193 (54%), Gaps = 15/193 (7%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIK- 187
Query: 200 CKESKIRCSVIGL 212
+ KI+ VI +
Sbjct: 188 -VDQKIKTKVITV 199
>gi|402580964|gb|EJW74913.1| hypothetical protein WUBG_14179, partial [Wuchereria bancrofti]
Length = 144
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 89/138 (64%), Gaps = 4/138 (2%)
Query: 201 KESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIAN 260
K IRCSVI LSAE+F+ K LC T G + V LD +HF+ ++ EHA PP + A ++
Sbjct: 3 KRYHIRCSVISLSAEIFVFKKLCSITSGRHDVVLDSTHFEVILSEHAIPP-VCSRNAESS 61
Query: 261 LIKMGFPQRAGEGSISICSCHK-EVKV--GVGYTCPRCKARVCELPTDCRICGLQLVSSP 317
+++MGFP S C CH+ EV+ G G+ CP+C AR C LP +CRIC L L+S+P
Sbjct: 62 VVRMGFPAHESIDCPSFCLCHQSEVRPPGGRGFFCPQCGARYCSLPVECRICKLTLISAP 121
Query: 318 HLARSYHHLFPIAPFDEV 335
LARS H+L P+ F+E+
Sbjct: 122 QLARSLHNLLPLPAFEEI 139
>gi|56786210|gb|AAW29208.1| Ssl1 [Drosophila yakuba]
gi|56786212|gb|AAW29209.1| Ssl1 [Drosophila yakuba]
gi|56786214|gb|AAW29210.1| Ssl1 [Drosophila yakuba]
gi|56786216|gb|AAW29211.1| Ssl1 [Drosophila yakuba]
gi|56786226|gb|AAW29216.1| Ssl1 [Drosophila yakuba]
gi|56786228|gb|AAW29217.1| Ssl1 [Drosophila yakuba]
gi|56786230|gb|AAW29218.1| Ssl1 [Drosophila yakuba]
gi|56786232|gb|AAW29219.1| Ssl1 [Drosophila yakuba]
Length = 166
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 96/165 (58%), Gaps = 12/165 (7%)
Query: 145 MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 204
+ + + + SLQN LDL L +PS+ RE++I+ +L+TCDP DI TI + K+
Sbjct: 2 LANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINITIDELKKEG 61
Query: 205 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKM 264
IRCSVI LSAE+ + ++L Q T G++ LD++HF++ +M PPPA A+ +LI+M
Sbjct: 62 IRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPA-AKTQHNSLIRM 120
Query: 265 GFPQRAGE-----GSISICSCHKE------VKVGVGYTCPRCKAR 298
GFP E +S+C CH E G+ CP+C ++
Sbjct: 121 GFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK 165
>gi|403267800|ref|XP_003925995.1| PREDICTED: general transcription factor IIH subunit 2 [Saimiri
boliviensis boliviensis]
Length = 233
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 116 QIGLVTVKDGVANCLTDLGGSPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSY 173
+IG++ K A LT+L G+P HI +L + C G+ SL N+L + L +P +
Sbjct: 30 KIGIIVTKSKRAEKLTELSGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGH 89
Query: 174 GHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVA 233
REVLI++S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L ++TGG+Y V
Sbjct: 90 TSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVI 149
Query: 234 LDESHFKELIMEHA 247
LDESH+KEL+ H
Sbjct: 150 LDESHYKELLTHHV 163
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 346 RSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
R C+GCQ L +YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 178 RMAGFCYGCQGEL----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 223
>gi|56786218|gb|AAW29212.1| Ssl1 [Drosophila santomea]
gi|56786220|gb|AAW29213.1| Ssl1 [Drosophila santomea]
gi|56786222|gb|AAW29214.1| Ssl1 [Drosophila santomea]
gi|56786224|gb|AAW29215.1| Ssl1 [Drosophila santomea]
gi|56786234|gb|AAW29220.1| Ssl1 [Drosophila santomea]
gi|56786236|gb|AAW29221.1| Ssl1 [Drosophila santomea]
gi|56786238|gb|AAW29222.1| Ssl1 [Drosophila santomea]
gi|56786240|gb|AAW29223.1| Ssl1 [Drosophila santomea]
Length = 166
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 95/165 (57%), Gaps = 12/165 (7%)
Query: 145 MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 204
+ + + + SLQN LDL L +PS+ RE++I+ +L+TCDP DI TI K+
Sbjct: 2 LANVSLTSEPSLQNGLDLALKSLKVVPSHASREIVIIMGSLTTCDPVDINITIDDLKKEG 61
Query: 205 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKM 264
IRCSVI LSAE+ + ++L Q T G++ LD++HF++ +M PPPA A+ +LI+M
Sbjct: 62 IRCSVISLSAEIHVARYLTQQTMGTFGAVLDDAHFRDQLMSQVDPPPA-AKTQHNSLIRM 120
Query: 265 GFPQRAGE-----GSISICSCHKE------VKVGVGYTCPRCKAR 298
GFP E +S+C CH E G+ CP+C ++
Sbjct: 121 GFPHTKNEVEGKDAPLSMCMCHIENLEEPSELTTTGHHCPQCNSK 165
>gi|402469018|gb|EJW04086.1| hypothetical protein EDEG_01608 [Edhazardia aedis USNM 41457]
Length = 341
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/377 (24%), Positives = 165/377 (43%), Gaps = 53/377 (14%)
Query: 30 AWERSYADDRSWEALQEDESG---FLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAAE 86
+WE+ Y RSW++ G R I ++++ R
Sbjct: 6 SWEKKYT--RSWQSTDVRNKGNEPLKRHISKDD--ATKFKKLGLIRHFCIVVDHSTNIDS 61
Query: 87 MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG 146
DF PS ++E FV +F + NP+S + + + + + +L +
Sbjct: 62 KDFLPSFRISTKNKLEKFVEKFSEDNPISTLTVCVNSNKTSESMQNLNSPGD-------- 113
Query: 147 KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIR 206
G SL+ AL+ +L S +E+L++ +LS D + TI+ ++ I+
Sbjct: 114 -----GFFSLKKALETGYEVLKD--STNIKEMLLIIFSLSINDRNGLETTIENVVKANIK 166
Query: 207 CSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGF 266
++I L AE+ I K +C TGG + V LD++H++ +M P ++ I+ LI++GF
Sbjct: 167 VNIINLCAELKILKTVCDRTGGKFCVPLDDNHYETSLMSFL-TPTSVPNSTIS-LIQIGF 224
Query: 267 P--QRAGEGSISICSCHKEV--KVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS 322
P + + + + C CH ++ Y+C +C A +C LP +C IC SS L ++
Sbjct: 225 PKVEVSDKNTPFCCVCHLKIIRPPFETYSCVKCSAILCSLPVECPICDTLNASSIGLCKN 284
Query: 323 YHHLFPIAPFDEVTPLCL--NDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCL 380
HH + + F C+ ND GC Q C KC FC
Sbjct: 285 IHHFYVLEDFVPSDGFCVVCNDK---------GCMQ--------------CQKCLNVFCR 321
Query: 381 ECDIYIHESLHNCPGCE 397
+C+ ++H++++ C CE
Sbjct: 322 DCNSFLHDNINFCFYCE 338
>gi|449488681|ref|XP_004158141.1| PREDICTED: serine/threonine-protein kinase TIO-like [Cucumis
sativus]
Length = 899
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 69/84 (82%), Gaps = 3/84 (3%)
Query: 1 MTNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAF 60
M N E +RLNGEA+EE++D+D N GL AWER+YADDRSWEALQEDESG LRPIDN A
Sbjct: 1 MNNGENRRLNGEADEEDDDDDAN---GLAAWERTYADDRSWEALQEDESGLLRPIDNKAI 57
Query: 61 YHAQYRRRLRDRSLVATTARIQKA 84
YHAQYRRRLR S +ATTARIQK
Sbjct: 58 YHAQYRRRLRTLSSLATTARIQKG 81
>gi|402592150|gb|EJW86079.1| hypothetical protein WUBG_03012, partial [Wuchereria bancrofti]
Length = 220
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 109/211 (51%), Gaps = 13/211 (6%)
Query: 30 AWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQ------ 82
WE YAD + + L+EDESG + + ++RL +R ++
Sbjct: 10 TWEVDYADGLNIRDVLREDESGSIEKSVAKLILDTKRKKRLNNRPAKVRLGIMRYVYLVI 69
Query: 83 ----KAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPE 138
A+ +PSR+AV K + F+ +F +QNP+SQ+G+V KD A L L G+
Sbjct: 70 DCSFSMADKSMQPSRLAVTIKALNQFLDKFSEQNPISQVGVVVCKDKRAERLIPLTGNVR 129
Query: 139 SHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMET 196
++L + +L C G+ SL N+L L P + REV+++ ++LSTCDP I T
Sbjct: 130 LVKESLSTITELLCHGEFSLHNSLMATIRSLHSYPGHASREVILIVASLSTCDPSSIFGT 189
Query: 197 IQKCKESKIRCSVIGLSAEMFICKHLCQDTG 227
+ K IRCSVI LSAE+F+ K LC T
Sbjct: 190 FELLKRYHIRCSVISLSAEIFVFKKLCSITS 220
>gi|383141961|gb|AFG52334.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141967|gb|AFG52337.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141975|gb|AFG52341.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141977|gb|AFG52342.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141987|gb|AFG52347.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
Length = 74
Score = 112 bits (280), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 59/75 (78%), Gaps = 3/75 (4%)
Query: 284 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 343
VKVG GYTCPRCKARVCELPT+C ICGL LVSSPHLARSYHHLFP+ PF+EV ND
Sbjct: 1 VKVGGGYTCPRCKARVCELPTECHICGLTLVSSPHLARSYHHLFPVTPFEEVLRTSSND- 59
Query: 344 RNRSRSTCFGCQQSL 358
R TCFGCQQ L
Sbjct: 60 --RLPRTCFGCQQFL 72
>gi|1737212|gb|AAC52046.1| basic transcription factor 2 p44, partial [Homo sapiens]
Length = 143
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 75/108 (69%), Gaps = 10/108 (9%)
Query: 289 GYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSR 348
GY CP+C+A+ CELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R
Sbjct: 36 GYFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER 91
Query: 349 STCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C+GCQ L +YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 92 -FCYGCQGEL----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHCCPGC 133
>gi|383141959|gb|AFG52333.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141963|gb|AFG52335.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141965|gb|AFG52336.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141969|gb|AFG52338.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141971|gb|AFG52339.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141973|gb|AFG52340.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141979|gb|AFG52343.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141981|gb|AFG52344.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141983|gb|AFG52345.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141985|gb|AFG52346.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141989|gb|AFG52348.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
gi|383141991|gb|AFG52349.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
Length = 74
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 58/75 (77%), Gaps = 3/75 (4%)
Query: 284 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 343
VKVG GYTCPRCKAR CELPT+C ICGL LVSSPHLARSYHHLFP+ PF+EV ND
Sbjct: 1 VKVGGGYTCPRCKARACELPTECHICGLTLVSSPHLARSYHHLFPVTPFEEVLRTSSND- 59
Query: 344 RNRSRSTCFGCQQSL 358
R TCFGCQQ L
Sbjct: 60 --RLPRTCFGCQQFL 72
>gi|387592763|gb|EIJ87787.1| hypothetical protein NEQG_01859 [Nematocida parisii ERTm3]
gi|387595388|gb|EIJ93012.1| hypothetical protein NEPG_01967 [Nematocida parisii ERTm1]
Length = 366
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 164/376 (43%), Gaps = 36/376 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFR 90
WE ++ + +WE + F ++ + +R R ++ E DF
Sbjct: 8 WEEAFQN--TWEKNSGTDDIFALNVNR----RTENLQRGIVRRILLVLDMSHSIEERDFL 61
Query: 91 PSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC 150
PSR V K V F REF + NPLS +GL V G++ ++ + E I+ +
Sbjct: 62 PSRKYYVKKGVMKFFREFIESNPLSTVGLAVVCGGMSYLVSSI-LCEEEEIEMCFSQNEG 120
Query: 151 SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTC--DPGDIMETIQKCKESKIRCS 208
+G+ SL +A + + +EV+ + S + P + T+ I
Sbjct: 121 AGNFSLGSAFETINEFFHGCSFL--KEVVFIISGFTFVGSSPFILKSTLIN---KGIIMH 175
Query: 209 VIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQ 268
I ++ EM I + L +++GG + + L+ PPP A A +++K+GFP
Sbjct: 176 TIHMAGEMEILRKLSEESGGVFGIVNCPEDLSTLLGLICIPPPHSAS-ARLSMLKIGFPS 234
Query: 269 RAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFP 328
E +IC+CH ++K GY CP C +VC++P C +C L + HL ++ H
Sbjct: 235 PIHEN--TICACHLDLK-EWGYECPFCTTKVCKVPGVCPVCENILSAPVHLLKALH---- 287
Query: 329 IAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHE 388
+ + P+ + + TC GC + N L+ +CP CK CL+C +I +
Sbjct: 288 ---WSDSAPIYV----AAIKGTCRGCFE------NNIQLH-SCPGCKNSLCLDCTRFIRQ 333
Query: 389 SLHNCPGCESLRHSNP 404
L+ C C S P
Sbjct: 334 ELNFCIFCPGAVSSVP 349
>gi|426384438|ref|XP_004058775.1| PREDICTED: general transcription factor IIH subunit 2-like [Gorilla
gorilla gorilla]
Length = 260
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Query: 136 SPESHIKALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P HI +L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I
Sbjct: 96 NPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNI 155
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEH 246
+ I+ K +KIR SVIGLSAE+ +C L ++TGG Y V LDESH+KEL+ H
Sbjct: 156 YDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGIYHVILDESHYKELLTHH 208
>gi|361068769|gb|AEW08696.1| Pinus taeda anonymous locus CL1234Contig1_04 genomic sequence
Length = 74
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 58/75 (77%), Gaps = 3/75 (4%)
Query: 284 VKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDP 343
VKVG GYTCPRCKA VCELPT+C ICGL LVSSPHLARSYHHLFP+ PF++V ND
Sbjct: 1 VKVGGGYTCPRCKAHVCELPTECHICGLTLVSSPHLARSYHHLFPVTPFEKVLRTSSND- 59
Query: 344 RNRSRSTCFGCQQSL 358
R TCFGCQQ L
Sbjct: 60 --RLPRTCFGCQQFL 72
>gi|378754973|gb|EHY65001.1| hypothetical protein NERG_02057 [Nematocida sp. 1 ERTm2]
Length = 357
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 161/378 (42%), Gaps = 56/378 (14%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFR 90
WE ++ + +WE + ++ F + + +R R ++ E DF
Sbjct: 8 WEEAFQN--TWEKHGKGDAIFALNVTR----RTENMQRGIVRRVLLVLDMSSSIEERDFL 61
Query: 91 PSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC 150
PSR V K V F REF + NPLS +GL V G++ ++ + E I+ +
Sbjct: 62 PSRKYYVKKGVIKFFREFTESNPLSTVGLAVVCGGMSYLVSSI-LCEEDEIEMCFAQNEG 120
Query: 151 SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSAL------------STCDPGDIMETIQ 198
G SL +A + V+ Q S+ +EV+ + S S + G IM TI
Sbjct: 121 QGGFSLGSAFETVKEFF-QGCSF-LKEVIFIVSGFTFVGRSPFILKNSLINKGIIMHTIH 178
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAI 258
++ EM I + + ++ GG + + L+ PPP A A
Sbjct: 179 -------------MAGEMEILRKISEECGGIFGIVNCPEDLSTLLGLICIPPPHSAS-AR 224
Query: 259 ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPH 318
+++K+GFP E +IC+CH E+K GY CP C +VC++P C IC L + H
Sbjct: 225 LSMLKIGFPSSIQEN--TICACHLELK-EWGYECPFCTTKVCKVPGVCPICENILSAPVH 281
Query: 319 LARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHF 378
L ++ H + + P+ + + R R GC + + CP CK
Sbjct: 282 LLKALH-------WSDSAPIYAPEGKGRCR----GCSEENIQLN-------GCPGCKSRL 323
Query: 379 CLECDIYIHESLHNCPGC 396
C++C +I + L+ C C
Sbjct: 324 CMDCTGFIRQELNFCIFC 341
>gi|147803583|emb|CAN77666.1| hypothetical protein VITISV_035971 [Vitis vinifera]
Length = 328
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 60/68 (88%)
Query: 130 LTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCD 189
+ DLGGS +SH+KALMGKL CSGDSSLQNAL+LV+G L+ IPSYG+REVLILYSALS CD
Sbjct: 114 MQDLGGSIDSHVKALMGKLECSGDSSLQNALNLVRGYLNLIPSYGYREVLILYSALSACD 173
Query: 190 PGDIMETI 197
GDI+ T+
Sbjct: 174 TGDIIPTL 181
>gi|269859684|ref|XP_002649566.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220066929|gb|EED44398.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 346
Score = 105 bits (261), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/369 (24%), Positives = 173/369 (46%), Gaps = 34/369 (9%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDF 89
AW + + ++W +D + ++ + NS R+ + R+LV + + ++
Sbjct: 8 AWTKEFK--QTW---NDDYNKKIKQVYNSDKKFNNCRKSII-RNLVFIIDMSEAIEKTEY 61
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLG 149
P+ + + ++ F F NPLS+I T V N + K L+ G
Sbjct: 62 LPTIRSFILPELSDFSDNFVKLNPLSKITFTTFNYKVLN-------TAFKFDKNLLSSYG 114
Query: 150 CSGDSSLQNALDLVQGLL-SQIPSYGHREVLILYSALSTCDPG-DIMETIQKCKESKIRC 207
+G S + L + G+ ++I S +E L++ S++ + + + +++ + KI+
Sbjct: 115 -TGHFSFTSCLSYINGITDTKITS---KECLLIISSVGVINEEINFDKVMKEIIQKKIKI 170
Query: 208 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP 267
++I + E+ + K +C TGG Y V ++ FK ++ + PP ++ +LI++GFP
Sbjct: 171 NIISICGEVTLLKKVCISTGGKYVVPINSFQFKSILSDFLYPPESLD--LKCSLIEVGFP 228
Query: 268 QRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLF 327
+ + C CH + V + CPRCK VC +P+ C IC L+L+SS + + +
Sbjct: 229 KNIYTQHL--CVCHLNL-CSVLFECPRCKGLVCTIPSTCPICKLELISSIDICDLICYNY 285
Query: 328 PIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIH 387
+ PF ++ + + ++ C+GC++ + S C KC FC CD +H
Sbjct: 286 YLEPFIKIAT--SKELSSLEKNKCYGCEKLEVIS--------VCNKCLSPFCYNCDAKLH 335
Query: 388 ESLHNCPGC 396
++ CP C
Sbjct: 336 NVINFCPFC 344
>gi|294942110|ref|XP_002783381.1| TFIIH basal transcription factor complex p44 subunit, putative
[Perkinsus marinus ATCC 50983]
gi|239895836|gb|EER15177.1| TFIIH basal transcription factor complex p44 subunit, putative
[Perkinsus marinus ATCC 50983]
Length = 188
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 20/195 (10%)
Query: 208 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP 267
SVI LS E++ + + + TGG++SVA HFK L+ +H PP ++ + IKMGFP
Sbjct: 8 SVISLSPELYALRKVVEMTGGTFSVATSPIHFKRLMQKHLTPPNWVSS---PSYIKMGFP 64
Query: 268 -QRAGEGSISI-----CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLAR 321
+RA +G+ + C CH ++ Y CP+C + VCE+P +C +C L LV L +
Sbjct: 65 VRRACDGNHTADPPIKCMCHNRLQKTFVYICPQCHSPVCEIPVNCPVCRLPLVDDDALKK 124
Query: 322 SYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLE 381
+ H++ + P + P ++ P++ TC C G + C +C C E
Sbjct: 125 HHRHIYSM-PTYTLLPT-VDYPKSY---TCQFCGTDFTEGGAR------CDQCLSDVCYE 173
Query: 382 CDIYIHESLHNCPGC 396
CD++ H L +CPGC
Sbjct: 174 CDMFAHNKLRHCPGC 188
>gi|85000913|ref|XP_955175.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303321|emb|CAI75699.1| hypothetical protein, conserved [Theileria annulata]
Length = 319
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 141/298 (47%), Gaps = 56/298 (18%)
Query: 30 AWERSYADDRSWEALQEDES--GFLRP---------IDNSAFYHAQ-----YRRRLRDRS 73
+WE D+SWE L E + F++P ID + Y+R +
Sbjct: 32 SWELDV--DKSWEQLIEKDGILQFIKPQTKIYQEFDIDYNTNLKQHNVDIIYKRGIIRFV 89
Query: 74 LVATTARI-----QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVAN 128
V + I ++ EMDF+P R+ ++ F+ + P++Q+G++ +++ + N
Sbjct: 90 TVFWSIMILFDMSEQMHEMDFKPDRLYCAFNSLKEFMNVLYGSGPITQVGIIVMRNKICN 149
Query: 129 CLTDLGGSPESHIKALMGKL--GCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALS 186
+T G +P+ ++ L L G G SSLQN L++ ++ ++P Y RE+LI++ +
Sbjct: 150 VITQFGTNPDEQMELLSNILKDGPEGSSSLQNGLEMCLKIMCELPYYMTREILIIFGSNK 209
Query: 187 TCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEH 246
T DPG+I+ T+ K K++ I + I LS E++I K G + V+
Sbjct: 210 TLDPGNILITLDKLKQNFITVNCISLSPELYILK-----GCGIFMVS------------- 251
Query: 247 APPPPAIAEFAIANLIKMGFPQRAG---EGSISICSCHKEVKVGVGYTCPRCKARVCE 301
PP I+ A +LI P ++ E +I+ C+ + + +GY C C+ CE
Sbjct: 252 ---PPDISR-AFHHLI----PPKSFHKIERNINCSGCN--LNIEIGYECQNCQGIFCE 299
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 17/88 (19%)
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CG+ +VS P ++R++HHL P F ++ RN + C GC ++ +
Sbjct: 245 CGIFMVSPPDISRAFHHLIPPKSFHKIE-------RNIN---CSGCNLNI-------EIG 287
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
C C+ FC CD YIH+ LH CP C
Sbjct: 288 YECQNCQGIFCEYCDKYIHQDLHQCPIC 315
>gi|269860338|ref|XP_002649891.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220066731|gb|EED44204.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 346
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 174/369 (47%), Gaps = 34/369 (9%)
Query: 30 AWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDF 89
AW + + ++W +D++ ++ + NS R+ + R+LV + + ++
Sbjct: 8 AWTKEFK--QTW---NDDDNKKIKQVYNSDKKFNNCRKSII-RNLVFIIDMSEAIEKTEY 61
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLG 149
P+ + + ++ F F NPLS+I V N + K L+ G
Sbjct: 62 LPTIRSFILPELSDFSDNFVKLNPLSKITFTIFNYKVLN-------TAFKFDKNLLSSYG 114
Query: 150 CSGDSSLQNALDLVQGLL-SQIPSYGHREVLILYSALSTCDPG-DIMETIQKCKESKIRC 207
+G S + L + G+ ++I S +E L++ S++ + + + +++ + KI+
Sbjct: 115 -TGHFSFTSCLSYINGITDTKITS---KECLLIISSVGVINKEINFDKVMKEIIQKKIKI 170
Query: 208 SVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFP 267
++I + E+ + K +C TGG Y V ++ FK ++ + PP ++ +LI++GFP
Sbjct: 171 NIISICGEVTLLKKVCISTGGKYVVPINSFQFKSILSDFLYPPESLD--LKCSLIEVGFP 228
Query: 268 QRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLF 327
+ + C+CH + V + CP+CK VC +P+ C IC L+L+SS + + +
Sbjct: 229 KNIYTQHL--CACHLNL-CSVLFECPKCKGLVCTIPSACPICKLELISSIDICDLICYNY 285
Query: 328 PIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIH 387
+ PF ++ + + ++ C+GC++ + S C KC FC CD +H
Sbjct: 286 HLEPFIKIAT--SKELSSLEKNKCYGCEKLEVIS--------VCNKCLSPFCYNCDAKLH 335
Query: 388 ESLHNCPGC 396
++ CP C
Sbjct: 336 NVINFCPFC 344
>gi|95007103|emb|CAJ20323.1| ssl1-like protein [Toxoplasma gondii RH]
Length = 647
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 114/433 (26%), Positives = 162/433 (37%), Gaps = 75/433 (17%)
Query: 7 KRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFL-------------R 53
+ L G + +ED G AWE +RSW+ L E GF+ R
Sbjct: 203 QELEGNGTDAAAEEDLY---GQYAWE--CEAERSWDQLIESSEGFVLLHGGAAEEGVKTR 257
Query: 54 PIDNSAFYHAQYRRRLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNP 113
+D + Q ++ + RSLV + E DFRP R+ V + E F+ F QNP
Sbjct: 258 RVDRRQQHEPQIKKGI-IRSLVLLIDMSEAMREKDFRPDRLRCVCQLAEEFIGTFLLQNP 316
Query: 114 LSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGC----------------------- 150
L+Q+ V + A L G + G
Sbjct: 317 LAQLAQVALIGPSAEPLAARGEAARDSAAVSARPSGSASMQLFSSSASESIAALREKRKH 376
Query: 151 ----SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIR 206
+G SL N L L + LL+ +P Y REVL+L+ +L TCD G I ETI K+S I
Sbjct: 377 PGVGTGVPSLNNGLHLAKDLLAGVPPYCTREVLVLFGSLRTCDVGCIEETIAAVKKSNIC 436
Query: 207 CSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA---IAEFAIANLIK 263
C+VI L+AE+ + K G S S HA PA A+++
Sbjct: 437 CNVICLAAELHVLKFSESLPGNGRSTRCASSPRASARSSHATHSPASLVCQHAALSHPHG 496
Query: 264 MGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSY 323
+ F + G S + P + P + L+S+P LA +
Sbjct: 497 ISFAEVDEHGGPLQLSPTPHFLL---LRLPPVRREALHHPQPLSM----LLSAPRLAGRH 549
Query: 324 HHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECD 383
+ P D ++ C C L G + CP C + FC +CD
Sbjct: 550 ---LAVVPADA----------PEAKRLCACCTTQLDRGGAQ------CPDCGEIFCHDCD 590
Query: 384 IYIHESLHNCPGC 396
IY HE L C C
Sbjct: 591 IYSHEQLRQCAFC 603
>gi|70917739|ref|XP_732957.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56504309|emb|CAH83594.1| hypothetical protein PC300587.00.0 [Plasmodium chabaudi chabaudi]
Length = 161
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG--K 147
+P+R+ V+ + VE F++ FF +NP+ +G+V +K+ A + L + + + +L+ K
Sbjct: 1 KPNRITVIFECVEIFLKNFFFKNPVGHVGVVALKNSSAKLIQQLTSNIDDVLNSLVKEQK 60
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC 207
G G SLQ L++ LL +P YG +E+LI+Y ++ TCD +I++ + ++ +
Sbjct: 61 EGLQGSPSLQEGLEIAHNLLMDMPLYGTKEILIMYGSIRTCDKKNILKYLDLLIKNNMYV 120
Query: 208 SVIGLSAEMFICKHLCQDTGGSYSV 232
+ I ++ EM I KH+C+ T G Y +
Sbjct: 121 NCISIAPEMHILKHICEKTHGIYKI 145
>gi|407425981|gb|EKF39551.1| DNA repair and transcription factor protein [Trypanosoma cruzi
marinkellei]
Length = 356
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 141/349 (40%), Gaps = 56/349 (16%)
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 147
D+ P+R+ + Q+ FV + D NPL+ +G+VT++DGVA+ L + I+ L K
Sbjct: 19 DYLPTRLLALRPQLGRFVHAYLDANPLASLGVVTMRDGVAHRLNSCTTNASDIIQTLEVK 78
Query: 148 ---LGCSGDSSLQNALDLVQGLLSQI-----------PSYGHRE----------VLILYS 183
G SG SL+N L L + P G +E +L++ S
Sbjct: 79 YFLFGGSGAMSLENGLRFALSELVDMKRIAKRVRRTEPRAGGKEAREEPTARLRILLVSS 138
Query: 184 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 243
+++ DP D+ I+ + +IR V+ + + + TGG+ ++ H E++
Sbjct: 139 SVTIIDPHDVFGVIKMLAKLRIRVDVVSFCGAVHVFEEAAVSTGGTLYTPMNYDHLTEVL 198
Query: 244 MEHAPPPPA-IAEFAIANLIKMGFP-------QRAGEGSISICSCHKEVKVGVGYT-CPR 294
A P I +I++GFP GEG Y CP+
Sbjct: 199 GRLASPDKRHICPEERPTMIRIGFPVYIECEDSEGGEGG------------STSYVACPQ 246
Query: 295 CKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRST---- 350
C +P+ C +C L L S+P + ++ + P E L+ + T
Sbjct: 247 CALMQTSIPSTCPLCKLLLCSAPLIHNTFIANNELCPVSENV---LDAFEGAEKPTEDYL 303
Query: 351 ---CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C CQ ++ K L C C C+ C+ Y+ E + CP C
Sbjct: 304 NERCSLCQYGMMGEDGK-ALVWRCNSCHCLRCVSCEKYVRERIGLCPTC 351
>gi|426384446|ref|XP_004058778.1| PREDICTED: general transcription factor IIH subunit 2-like, partial
[Gorilla gorilla gorilla]
Length = 119
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 82/129 (63%), Gaps = 15/129 (11%)
Query: 230 YSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG 289
Y V LDESH+KEL+ H PPPA + +LI+MG + +G+ + +G G
Sbjct: 2 YHVILDESHYKELLTHHVSPPPASSSSE-CSLIRMG---KHLDGNTE-----PGLTLG-G 51
Query: 290 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRS 349
Y CP+C+A+ CELP +C+ICGL LVS+PHLARSYHHLFP+ F E+ PL + N R
Sbjct: 52 YFCPQCRAKYCELPVECKICGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER- 106
Query: 350 TCFGCQQSL 358
C+GCQ L
Sbjct: 107 FCYGCQGEL 115
>gi|222871523|gb|EEF08654.1| predicted protein [Populus trichocarpa]
Length = 104
Score = 94.0 bits (232), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/77 (54%), Positives = 59/77 (76%)
Query: 170 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 229
+P + REVLI++S+L+TCDP +I + I+ K +KIR SVIGLSAE+ +C L ++TGG+
Sbjct: 1 MPGHTSREVLIIFSSLTTCDPSNIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGT 60
Query: 230 YSVALDESHFKELIMEH 246
Y V LDESH+KEL+ H
Sbjct: 61 YHVILDESHYKELLTHH 77
>gi|71664710|ref|XP_819333.1| DNA repair and transcription factor protein [Trypanosoma cruzi
strain CL Brener]
gi|70884629|gb|EAN97482.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 356
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/350 (24%), Positives = 149/350 (42%), Gaps = 58/350 (16%)
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 147
D+ P+R+ + Q+ FV + D NPL+ +G+VT++DGVA+ L + I+ L K
Sbjct: 19 DYLPTRLLALRPQLGRFVHAYLDANPLASLGVVTMRDGVAHRLNSCTTNASDIIQTLEVK 78
Query: 148 ---LGCSGDSSLQNALDLVQGLLSQI-----------PSYGHRE----------VLILYS 183
G SG SL+N L L + P G +E +L++ S
Sbjct: 79 YFLFGGSGAMSLENGLRFALSELVDMKRIAKRVRRTEPHAGGKEAREEPTARLRILLVSS 138
Query: 184 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 243
+++ DP D+ I+ + ++R VI + + TGG+ ++ H E++
Sbjct: 139 SVTVIDPHDVFGVIKMMAKLRVRVDVISFCGAVHVFGEAAVSTGGTLYTPMNYDHLTEVL 198
Query: 244 -MEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG-----YTCPRCKA 297
+ +P + + +I++GFP +C KE + G G CP+C
Sbjct: 199 GLLASPDKHHVCQEERPAMIRIGFPVYI--------NC-KEPEGGEGGSTNYVACPQCAL 249
Query: 298 RVCELPTDCRICGLQLVSSPHLARSY---HHLFPIAP--------FDEVTPLCLNDPRNR 346
+P+ C +C L L S+P + ++ + L P++ D+ T LN+
Sbjct: 250 VQTSIPSTCPLCKLLLCSAPLIHNTFIAHNELCPVSENVVDAFEGTDKPTEDYLNE---- 305
Query: 347 SRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C CQ ++ + L C C C+ C+ Y+ E + CP C
Sbjct: 306 ---RCSLCQYGMMGEDGR-ALVWRCNSCHCLRCVSCEKYVRERIGLCPTC 351
>gi|407843613|gb|EKG01508.1| DNA repair and transcription factor protein [Trypanosoma cruzi]
Length = 397
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 85/353 (24%), Positives = 144/353 (40%), Gaps = 64/353 (18%)
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 147
D+ P+R+ + Q+ FV + D NPL+ +G+VT++DGVA+ L + I+ L K
Sbjct: 60 DYLPTRLLALRPQLGRFVHAYLDANPLASLGVVTMRDGVAHRLNSCTTNASDIIQTLEVK 119
Query: 148 ---LGCSGDSSLQNALDLVQGLLSQI-----------PSYGHRE----------VLILYS 183
G SG SL+N L L + P G +E +L++ S
Sbjct: 120 YFLFGGSGAMSLENGLRFALSELVDMKRIAKRVRRTEPRAGGKEAREEPTARLRILLVSS 179
Query: 184 ALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELI 243
+++ DP D+ I+ + +R VI + + TGG+ ++ H E++
Sbjct: 180 SVTVIDPHDVFGVIKMMAKLHVRVDVISFCGAVHVFGEAAVSTGGTLYTPMNYDHLTEVL 239
Query: 244 MEHAPPPPA-IAEFAIANLIKMGFP-------QRAGEGSISICSCHKEVKVGVGYT-CPR 294
A P + + +I++GFP GEG Y CP+
Sbjct: 240 GRLASPDKRHVCQEERPAMIRIGFPVYIDCKEPEGGEGG------------STNYVACPQ 287
Query: 295 CKARVCELPTDCRICGLQLVSSPHLARSY---HHLFPIAP--------FDEVTPLCLNDP 343
C +P+ C +C L L S+P + ++ + L P++ D+ T LN+
Sbjct: 288 CALVQTSIPSTCPLCKLLLCSAPLIHNTFIAHNELCPVSENVVDAFEGADKPTEDYLNE- 346
Query: 344 RNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C CQ ++ + L C C C+ C+ Y+ E + CP C
Sbjct: 347 ------RCSLCQYGMMGEDGR-ALVWRCNSCHCLRCVSCEKYVRERIGLCPTC 392
>gi|30584663|gb|AAP36584.1| Homo sapiens general transcription factor IIH, polypeptide 2, 44kDa
[synthetic construct]
Length = 166
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 13/151 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQI 170
+L + C G+ SL N+L + L +
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSIAMQTLKLV 159
>gi|13529149|gb|AAH05345.1| GTF2H2 protein [Homo sapiens]
gi|30582385|gb|AAP35419.1| general transcription factor IIH, polypeptide 2, 44kDa [Homo
sapiens]
Length = 165
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 13/151 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQI 170
+L + C G+ SL N+L + L +
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSIAMQTLKLV 159
>gi|26347121|dbj|BAC37209.1| unnamed protein product [Mus musculus]
Length = 201
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 75/148 (50%), Gaps = 13/148 (8%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDE+G L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLL 167
+L + C G+ SL N+L + L
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTL 156
>gi|56753383|gb|AAW24895.1| SJCHGC07056 protein [Schistosoma japonicum]
Length = 150
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 28/134 (20%)
Query: 290 YTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVT------PLCLNDP 343
Y CPRC A CELP +C +CGL LV++PHLAR+YHHLFP+ F+ V +N+
Sbjct: 19 YACPRCHAAYCELPVECNVCGLTLVAAPHLARAYHHLFPLDLFEPVVDNNSSEKSLVNED 78
Query: 344 RNRSR------------------STCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIY 385
+++ C GC +++ PG CPKC FC CD
Sbjct: 79 KSKETINSSSDDNNNNNNNNNQLRVCTGC--NVIIPSRIPGY--QCPKCTFIFCHSCDAI 134
Query: 386 IHESLHNCPGCESL 399
+H+S+H+CPGC +L
Sbjct: 135 LHDSIHSCPGCLTL 148
>gi|342182931|emb|CCC92411.1| putative DNA repair and transcription factor protein [Trypanosoma
congolense IL3000]
Length = 354
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 140/344 (40%), Gaps = 47/344 (13%)
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 147
D+ P+R+ + Q+ AFV F D NPL+ +G+V ++DGVA+ L + AL K
Sbjct: 19 DYLPTRLLALRPQLNAFVHAFLDDNPLASLGVVVMRDGVAHRLISCTANATDIAHALELK 78
Query: 148 ---LGCSGDSSLQNALDLVQGLLSQIPSYGHR-----------------------EVLIL 181
G SG SL+N L + L + R V+++
Sbjct: 79 YFLFGGSGAMSLENGLRMALSELVDLKRIAKRVRREAEMPGPNEEGLRPDHATQLRVILV 138
Query: 182 YSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKE 241
S+++ DP D+ + + ++R V+ + + TGG ++ H
Sbjct: 139 ASSVTLVDPHDVFRVQKVVAQLRVRVDVVSFCGAVHALQEAALTTGGQLYTPMNYEHLTG 198
Query: 242 LIMEHAPPPPAIAEFAIAN--LIKMGFPQRA-GEGSISICSCHKEVKVGVGYTCPRCKAR 298
++ + A P +I++GFP+ EG KE + CP+C
Sbjct: 199 ILQKLAAPERGSTHPLTERPAMIQIGFPRYVEAEG--------KEKRY---MGCPQCGLI 247
Query: 299 VCELPTDCRICGLQLVSSPHLARSY-HHLFPIAPFDEV-----TPLCLNDPRNRSRSTCF 352
+P+ C +C L L S+P + S+ PIAP +V P +D S
Sbjct: 248 QTSVPSTCPLCKLLLCSAPLIHTSFITKNEPIAPSQKVESKQKAPSGESD-EAPSVHCSL 306
Query: 353 GCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C++ L G+ ++ C C + C C+ Y+ E + CP C
Sbjct: 307 CCRRKPLGVGDGGMVFWRCSCCLRERCDVCEAYVKEGIGLCPTC 350
>gi|115432926|ref|XP_001216600.1| hypothetical protein ATEG_07979 [Aspergillus terreus NIH2624]
gi|114189452|gb|EAU31152.1| hypothetical protein ATEG_07979 [Aspergillus terreus NIH2624]
Length = 202
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 16/163 (9%)
Query: 26 GGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVA 76
GG E WE S R+WE L E G + + +R LRD R L+
Sbjct: 42 GGAE-WEVS----RTWETLVEGADGTISSTVEGLLEAGKRKRLLRDTTPLQRGIIRHLIL 96
Query: 77 TTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
AE D RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+
Sbjct: 97 ILDLSLSMAEKDLRPTRYLLTLRYAQEFVREFFEQNPISQLGVLGLRDGLAVRISDMSGN 156
Query: 137 PESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHRE 177
P HI A+ + G SLQN L++ +G L + + HRE
Sbjct: 157 PTEHISAIQALRDQDPKGLPSLQNGLEMARGALLYVLTLNHRE 199
>gi|72393367|ref|XP_847484.1| DNA repair and transcription factor protein [Trypanosoma brucei
TREU927]
gi|62359582|gb|AAX80015.1| DNA repair and transcription factor protein, putative [Trypanosoma
brucei]
gi|70803514|gb|AAZ13418.1| DNA repair and transcription factor protein, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 351
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 36/263 (13%)
Query: 87 MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG 146
+D+ P+R+ + Q+ FV + D NPL+ +G+V ++DGVA L + ++ L
Sbjct: 18 LDYLPTRLIALRPQLNKFVHTYLDANPLASLGVVVMRDGVAQRLIPCTTNATDIVQTLEL 77
Query: 147 K---LGCSGDSSLQNALDLVQGLLSQIPSYGHR---------------------EVLILY 182
K G SG SL+N L + L + R +++
Sbjct: 78 KYFRFGGSGAMSLENGLRMALSELVDLRRIAKRLRENNSGSTGSDVQEDVTSRLRIVLAS 137
Query: 183 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 242
S+++ DP D+ + + ++R VI + + + TGGS ++ H E+
Sbjct: 138 SSVTIVDPLDVFAVQKIVAQLRVRVDVISFCGAVHVLQEAAVLTGGSLHTPMNYEHLTEI 197
Query: 243 IMEHAPPPPAIAEFAIAN--LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 300
+ A P A LI++GFP G+ E + TCP+C
Sbjct: 198 LRHLASPEGGSARHVDVQPALIQIGFPMYVGD----------EAEGKRYLTCPQCGLIQT 247
Query: 301 ELPTDCRICGLQLVSSPHLARSY 323
+P+ C +C L L S P + ++
Sbjct: 248 SIPSTCSLCKLLLFSVPLIHVTF 270
>gi|261330741|emb|CBH13726.1| DNA repair and transcription factor protein,putative [Trypanosoma
brucei gambiense DAL972]
Length = 351
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 109/263 (41%), Gaps = 36/263 (13%)
Query: 87 MDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMG 146
+D+ P+R+ + Q+ FV + D NPL+ +G+V ++DGVA L + ++ L
Sbjct: 18 LDYLPTRLIALRPQLNKFVHTYLDANPLASLGVVVMRDGVAQRLIPCTTNATDIVQTLEL 77
Query: 147 K---LGCSGDSSLQNALDLVQGLLSQIPSYGHR---------------------EVLILY 182
K G SG SL+N L + L + R +++
Sbjct: 78 KYFRFGGSGAMSLENGLRMALSELVDLRRIAKRLRENNSGSTGSDVQEDVTSRLRIVLAS 137
Query: 183 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 242
S+++ DP D+ + + ++R VI + + + TGGS ++ H E+
Sbjct: 138 SSVTIVDPLDVFAVQKIVAQLRVRVDVISFCGAVHVLQEAAVLTGGSLHTPMNYEHLTEI 197
Query: 243 IMEHAPPPPAIAEFAIAN--LIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVC 300
+ A P A LI++GFP G+ E + TCP+C
Sbjct: 198 LRHLASPEGGSARHVGVQPALIQIGFPMYVGD----------EAEGKRYLTCPQCGLIQT 247
Query: 301 ELPTDCRICGLQLVSSPHLARSY 323
+P+ C +C L L S P + ++
Sbjct: 248 SIPSTCPLCKLLLFSVPLIHVTF 270
>gi|340055688|emb|CCC50009.1| putative DNA repair and transcription factor protein, fragment
[Trypanosoma vivax Y486]
Length = 355
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 39/262 (14%)
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 147
D+ P+R+ + Q+ AFV +FD+NPL+ +G+V ++DGVA+ + + ++AL K
Sbjct: 19 DYLPTRLLALRPQLHAFVHTYFDENPLAALGVVVMRDGVAHRICSCTTNATDILQALEVK 78
Query: 148 ---LGCSGDSSLQNALDLVQGLLSQIPSYGHR---------------------------E 177
G SG SL+N L L L ++ R
Sbjct: 79 YFLFGGSGAMSLENGLRLALSELVELKRIAKRLRQDGVDTGNGSNGSRGPTLEQPSARLR 138
Query: 178 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDES 237
++++ S+++ DP D+ + ++R VI S + + TGG L
Sbjct: 139 IVVISSSVTLVDPHDVFAVQRLVARLRVRVDVISFSGAVHALEEAAAVTGGMLHTPLGYD 198
Query: 238 HFKELIMEHAPPPPAIA--EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRC 295
H ++ A P A E + +I++GFP + + S EV+ CP+C
Sbjct: 199 HLTTILRRLAAPDKMAARREGEKSPMIRIGFP-------LHMESAEAEVERRRFIACPQC 251
Query: 296 KARVCELPTDCRICGLQLVSSP 317
P+ C +C L + S P
Sbjct: 252 GLVQTATPSTCHLCKLLICSVP 273
>gi|413921934|gb|AFW61866.1| hypothetical protein ZEAMMB73_690183 [Zea mays]
Length = 266
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 54/83 (65%), Gaps = 5/83 (6%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
T + R+R G+ EE+ DE L EAWER+YAD+RSWE+LQEDESG LRP+D
Sbjct: 96 TAASRRRNPGDEEEDVGDEGRVL----EAWERAYADERSWESLQEDESGLLRPVDTKTLV 151
Query: 62 HAQYRRRLRDRSLVATTARIQKA 84
HA+YR L RS A ARIQK
Sbjct: 152 HARYRWCLLLRS-TAAAARIQKG 173
>gi|736404|gb|AAA64502.1| BTF2p44 [Homo sapiens]
Length = 130
Score = 79.7 bits (195), Expect = 3e-12, Method: Composition-based stats.
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P I
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKXI 128
Query: 142 KA 143
+
Sbjct: 129 SS 130
>gi|147832400|emb|CAN64423.1| hypothetical protein VITISV_032275 [Vitis vinifera]
Length = 578
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 49/66 (74%), Gaps = 5/66 (7%)
Query: 81 IQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESH 140
+Q+ E+ + + +VV + +EFFDQ+P SQIGLVT+KDG+A CLTDLGGSP+SH
Sbjct: 179 LQEKLEVALQTMKQSVVHTR-----KEFFDQDPFSQIGLVTIKDGLAQCLTDLGGSPDSH 233
Query: 141 IKALMG 146
+KALM
Sbjct: 234 VKALMA 239
>gi|154318002|ref|XP_001558320.1| hypothetical protein BC1G_02984 [Botryotinia fuckeliana B05.10]
Length = 211
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 14/162 (8%)
Query: 25 NGGLEAWERSYAD-DRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSL 74
NGG + ++ D RSW+ + E G + + +R LRD R
Sbjct: 49 NGGGNRRKAAWEDIQRSWDTVVEGADGSINSTVEGLREANKRKRLLRDTTPLQRGIIRHF 108
Query: 75 VATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLG 134
+ E D RP+R + + FV E+F+QNP+SQ+G++ ++DG+A ++D+
Sbjct: 109 ILILDLSFAMTEKDMRPTRYLLTIRYASEFVTEYFEQNPISQLGIIGMRDGIAVRISDMS 168
Query: 135 GSPESHI---KALMGKLGCSGDSSLQNALDLVQGLLSQIPSY 173
G+P HI KAL G G+ SLQNAL++ + L PS+
Sbjct: 169 GNPTEHIERLKALRVDQG-QGNPSLQNALEMSRAALFHAPSH 209
>gi|324562745|gb|ADY49854.1| General transcription factor IIH subunit 2, partial [Ascaris suum]
Length = 85
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 264 MGFPQRAGEGSISICSCHK---EVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLA 320
MGFP + C CH+ G G+ CP+C AR C LP +CR+C L L+S+P LA
Sbjct: 1 MGFPSHQIIQKPAFCLCHQSENRPPGGRGFLCPQCGARYCSLPVECRVCKLMLISAPQLA 60
Query: 321 RSYHHLFPIAPFDEVTPLCLN 341
RS+HHL P+ F EV C+
Sbjct: 61 RSFHHLLPLPAFKEVIDYCVK 81
>gi|123446514|ref|XP_001312007.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121893838|gb|EAX99077.1| hypothetical protein TVAG_290240 [Trichomonas vaginalis G3]
Length = 166
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 13/136 (9%)
Query: 94 MAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCS 151
M ++ Q F+ +FF QNPLSQ+ ++ + LT L + + H+K + +
Sbjct: 1 MKLIQDQTIDFINDFFVQNPLSQLSILATYESTCRILTPLSCNVQDHVKKIKSLSLEDHG 60
Query: 152 GDSSLQNALDLVQGLL---------SQIPSYGHREVLILYSALSTCDPGDIMETIQKCKE 202
G+ SL+++L + +L +QI + +EVLI+Y +L+TCD I +T+ ++
Sbjct: 61 GEPSLESSLSIATAILGNGEKNPGLAQIST--TKEVLIVYGSLTTCDNSPIYKTLNLVRD 118
Query: 203 SKIRCSVIGLSAEMFI 218
SKI+ S+IGL A++F+
Sbjct: 119 SKIKVSIIGLGAKVFV 134
>gi|149059194|gb|EDM10201.1| general transcription factor II H, polypeptide 2 (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 159
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L +
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSDT 123
>gi|148668488|gb|EDL00807.1| general transcription factor II H, polypeptide 2, isoform CRA_b
[Mus musculus]
Length = 159
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDE+G L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS 136
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L +
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSDT 123
>gi|238503359|ref|XP_002382913.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Aspergillus
flavus NRRL3357]
gi|220691723|gb|EED48071.1| RNA polymerase TFIIH complex subunit Ssl1, putative [Aspergillus
flavus NRRL3357]
Length = 87
Score = 71.2 bits (173), Expect = 8e-10, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL- 144
E D RP+R + + + VREFF+QNP+SQ+G++ ++DG+A ++DL G+P HI A+
Sbjct: 3 EKDLRPTRYLLTLRYAQELVREFFEQNPISQLGVLGLRDGLAIRISDLSGNPTEHISAIQ 62
Query: 145 -MGKLGCSGDSSLQNALDLVQGLL 167
+ G SLQN +++ +G L
Sbjct: 63 TLRDQDPKGLPSLQNGIEMARGAL 86
>gi|241165648|ref|XP_002409694.1| Bcl-2-associated transcription factor (BTF), putative [Ixodes
scapularis]
gi|215494619|gb|EEC04260.1| Bcl-2-associated transcription factor (BTF), putative [Ixodes
scapularis]
Length = 123
Score = 70.1 bits (170), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 56/83 (67%), Gaps = 4/83 (4%)
Query: 197 IQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEF 256
+QKC IRCSV+GL+AE+ +C L + TGG+Y+V +DE+HFKE++ +HA PPP
Sbjct: 1 MQKCS---IRCSVVGLAAEVRVCCALTKATGGTYNVIMDENHFKEILFQHAIPPPVTGN- 56
Query: 257 AIANLIKMGFPQRAGEGSISICS 279
+ ++LI+M A S++I S
Sbjct: 57 SESSLIRMVHVSPACPPSLTIMS 79
>gi|321452740|gb|EFX64060.1| hypothetical protein DAPPUDRAFT_267127 [Daphnia pulex]
Length = 135
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 11/100 (11%)
Query: 145 MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESK 204
M C+G++SLQN+ + L +P++ RE+L L L I+ KE+
Sbjct: 39 MKDTSCNGETSLQNSFERAMCGLKNMPAHSSREMLTLLVIL-----------IKSFKENN 87
Query: 205 IRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIM 244
IR S+IGL+AE+ IC+ + + TGG+Y+V LD+ + KE ++
Sbjct: 88 IRVSIIGLAAEVRICQEIAKRTGGTYNVLLDDHYLKETLI 127
>gi|119498681|ref|XP_001266098.1| transcription factor and DNA repair complex, core TFIIH, putative
[Neosartorya fischeri NRRL 181]
gi|119414262|gb|EAW24201.1| transcription factor and DNA repair complex, core TFIIH, putative
[Neosartorya fischeri NRRL 181]
Length = 157
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 90 RPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGK 147
RP+R + + + FVREFF+QNP+SQ+G++ ++DG+A ++D+ G+P HI A+ +
Sbjct: 77 RPTRYLLSLRYAQEFVREFFEQNPISQLGVLGLRDGLAIRVSDMSGNPTEHISAIQALRD 136
Query: 148 LGCSGDSSLQNALDLVQGLL 167
G SLQN L++ +G L
Sbjct: 137 HDPKGLPSLQNGLEMARGAL 156
>gi|431907809|gb|ELK11416.1| Baculoviral IAP repeat-containing protein 1 [Pteropus alecto]
Length = 1274
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 12/97 (12%)
Query: 225 DTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRA--------GEGSIS 276
+ G+Y V LDESH+KEL+ H PPPA + +LI+MGFPQ + S S
Sbjct: 77 ELSGTYHVILDESHYKELLTHHVSPPPASSSSE-CSLIRMGFPQHTIASLSDQDAKPSFS 135
Query: 277 ICSCHKEVKVGV---GYTCPRCKARVCELPTDCRICG 310
+ + G+ GY CP+C+A+ CELP +C+ICG
Sbjct: 136 MAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKICG 172
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGS-----PESH 140
+ D +P+R+ K +E F+ E+FDQNP+SQIG++ K A LT+L G+ ESH
Sbjct: 31 DQDLKPNRLTCTLKLLEYFIEEYFDQNPISQIGIIVTKSKRAEKLTELSGTYHVILDESH 90
Query: 141 IKALM 145
K L+
Sbjct: 91 YKELL 95
>gi|169806142|ref|XP_001827816.1| transcription-repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|161779264|gb|EDQ31287.1| transcription-repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 187
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 15/183 (8%)
Query: 214 AEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEG 273
E+ + K +C TGG Y V ++ FK ++ + ++ +LI++ FP+
Sbjct: 18 GEVTLLKKVCISTGGKYVVLINSFQFKSILSDFLYLLESLD--LKCSLIEVEFPKNIYTQ 75
Query: 274 SISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFD 333
+ C+CH + V + CP+CK VC +P C IC L+L+SS + + + + F
Sbjct: 76 HL--CACHLNL-CSVLFECPKCKGFVCTIPFTCPICKLELISSTDIRDLICYNYYLESFV 132
Query: 334 EVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNC 393
++ + + ++ C+GC++ + S C KC FC CD +H ++ C
Sbjct: 133 KIVT--SKELSSLEKNKCYGCEKLEVIS--------VCNKCLSPFCYNCDAKLHNVINFC 182
Query: 394 PGC 396
C
Sbjct: 183 SFC 185
>gi|253742551|gb|EES99376.1| TFIIH P44 [Giardia intestinalis ATCC 50581]
Length = 393
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 121/319 (37%), Gaps = 32/319 (10%)
Query: 104 FVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLV 163
+V+ PL ++ +T+++ + + + + L SG +L LD
Sbjct: 78 YVQFILSHRPLIRVAFMTLQNSLCYLELRFSSNLSAFEEVLRDGFRPSGHIALATGLDQA 137
Query: 164 QGLLSQIPSYGH-REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHL 222
LL S R +L + + +T D DI ++K ++++ + L+ + H+
Sbjct: 138 YELLMNSKSAASSRRILYINFSSATIDSLDIFNVLEKLLSAQVQVDTVSLTNSFGVLDHI 197
Query: 223 CQDTGGSYSVALDESH------------FKELIMEHAPPPPAIAEFAIANLIKMGFPQRA 270
+ TGG + + E+ E + + I +GFP
Sbjct: 198 SRKTGGRHLIIDRETKGGLLNLLKRLELRSEDVRITQATEEGDSNVDEGKFIMVGFPVHI 257
Query: 271 GEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARS---YHHLF 327
+ +I C CH G Y CP C A VC++ ++C CGLQLV P+L R +
Sbjct: 258 CDDAI--CFCHNRHGTGF-YECPFCYAVVCDI-SECVCCGLQLVMYPNLYRGALLHKRAL 313
Query: 328 PIAPFDE--VTPLCLNDPRN--------RSRSTCFGCQQSLLSSGNKPGLYVACPKCKKH 377
D V P N +++S C CQ + ++ C C
Sbjct: 314 SFTKSDSSLVQPEAATSSANQAEDSKHIKAKSVCSLCQMQYGTDTDRSQYL--CSFCSGP 371
Query: 378 FCLECDIYIHESLHNCPGC 396
FC C + E+ +CP C
Sbjct: 372 FCKSCSELLAEAKVSCPVC 390
>gi|432104566|gb|ELK31178.1| Baculoviral IAP repeat-containing protein 1 [Myotis davidii]
Length = 1414
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 68 RLRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVA 127
++R +V +R + + D +P+R+ K +E FV E+FDQNP+SQIG++ K A
Sbjct: 76 QMRHLYVVVDGSRTME--DQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRA 133
Query: 128 NCLTDLGGS-----PESHIKALM 145
LT+L G+ ESH K L+
Sbjct: 134 EKLTELSGTYHVILDESHYKELL 156
>gi|312076198|ref|XP_003140754.1| hypothetical protein LOAG_05169 [Loa loa]
Length = 127
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 30 AWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRRLRDRSLVATTARIQ------ 82
WE YAD + + L EDESG + + ++RL +R ++
Sbjct: 11 TWEVDYADGLNIRDVLHEDESGSIEKSVAKLILDTKRKKRLNNRPAKVRLGIMRYLYLVI 70
Query: 83 ----KAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
A+ PSR+AV K + F+ +F +QNP+SQ+G+V KD A CL L G
Sbjct: 71 DCSFSMADKSIPPSRLAVTIKALNQFLDKFSEQNPISQVGIVVCKDKRAECLIPLTG 127
>gi|159115826|ref|XP_001708135.1| TFIIH P44 [Giardia lamblia ATCC 50803]
gi|157436245|gb|EDO80461.1| TFIIH P44 [Giardia lamblia ATCC 50803]
Length = 406
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 98/247 (39%), Gaps = 36/247 (14%)
Query: 104 FVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLV 163
+V+ PL ++ +T+++ + + + + L SG +L LD
Sbjct: 78 YVQFILSHRPLIRVAFMTLQNSLCYLELRFSSNLSAFEEVLRDGFRPSGHIALATGLDQA 137
Query: 164 QGLLSQIPSYGH-REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHL 222
LL S R +L + + +T D DI ++K ++I+ ++ L+ + H+
Sbjct: 138 YELLMNNKSAASSRRILYVNFSNATLDSLDIFSVLEKLLAAQIQVDIVSLTNRFGVLDHI 197
Query: 223 CQDTGGSYSVA-----------------------LDESHFKELIMEH-----APPPPAIA 254
+ TGG + + L S +E EH A
Sbjct: 198 SRVTGGRHLIVDRDVKGGLLNLLKRLELRSEDTRLMHSKGRE---EHSLNLQASHNQTAT 254
Query: 255 EFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLV 314
+ I +GFP + +I C CH G Y CP C A VC++ ++C CGLQLV
Sbjct: 255 DTEGGKFIMVGFPVHICDDAI--CFCHNRHGTGF-YECPFCYAVVCDI-SECVCCGLQLV 310
Query: 315 SSPHLAR 321
P+L R
Sbjct: 311 MYPNLYR 317
>gi|308162603|gb|EFO64989.1| TFIIH P44 [Giardia lamblia P15]
Length = 416
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 98/254 (38%), Gaps = 40/254 (15%)
Query: 104 FVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLV 163
+V+ PL ++ +T+++ + + + + L SG +L LD
Sbjct: 78 YVQFILSHRPLIRVAFMTLQNSLCYLELRFSSNLSAFEEVLRDGFRPSGHIALATGLDQA 137
Query: 164 QGLLSQIPSYGH-REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHL 222
LL S R +L + + +T D DI ++K ++I+ V+ L+ + H+
Sbjct: 138 YDLLMNSGSAASSRRILYINFSNATLDSLDIFSVLEKLFAAQIQVDVVSLTNSFGVLDHI 197
Query: 223 CQDTGGSY----------------------------------SVALDESHFKELIMEHAP 248
+ TGG + ++ L SH + +
Sbjct: 198 SRTTGGRHLIVDREIKGGLLNLLKRLELRSEDAKIMQSKGEGTLNLQMSHNQIITDAKCT 257
Query: 249 PPPAIAEFAI-ANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCR 307
+A I +GFP + +I C CH G Y CP C A VC++ ++C
Sbjct: 258 KDTVLASNTEEGKFIMVGFPVHICDDAI--CFCHNRHGTGF-YECPFCYAIVCDI-SECV 313
Query: 308 ICGLQLVSSPHLAR 321
CGLQLV P+L R
Sbjct: 314 CCGLQLVMYPNLYR 327
>gi|222838932|gb|EEE77283.1| predicted protein [Populus trichocarpa]
Length = 72
Score = 55.5 bits (132), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 86 EMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
+ D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G
Sbjct: 16 DQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSG 65
>gi|321454255|gb|EFX65433.1| hypothetical protein DAPPUDRAFT_264704 [Daphnia pulex]
Length = 72
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 16/85 (18%)
Query: 170 IPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 229
+P++ RE+L L L E+ IR S+IGL+AE+ IC+ + + TGG+
Sbjct: 1 MPAHSSREMLTLLVIL----------------ENNIRVSIIGLAAEVRICQEIAKRTGGT 44
Query: 230 YSVALDESHFKELIMEHAPPPPAIA 254
Y+V LD+ + KE ++ + P A+A
Sbjct: 45 YNVLLDDHYLKETLILNQVQPLAVA 69
>gi|294930956|ref|XP_002779725.1| btf, putative [Perkinsus marinus ATCC 50983]
gi|239889260|gb|EER11520.1| btf, putative [Perkinsus marinus ATCC 50983]
Length = 200
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 87 MDFRPSRMAVVAKQV-EAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALM 145
MD++ +R+ V + F+ ++FD NP+S + ++ ++D A+ +T + G P S ++ ++
Sbjct: 107 MDYKQNRLDFVVSHLCRNFIPQYFDLNPISNLSVLALRDQRAHFVTRMSGQPASQMERVL 166
Query: 146 --GKLGCSGDSSLQNALDLV-QGLLSQIPSYG 174
G SG +SL NAL+ V Q +P YG
Sbjct: 167 QFSTGGASGSASLVNALEAVGQAAKGSLPRYG 198
>gi|399949974|gb|AFP65630.1| hypothetical protein CMESO_485 [Chroomonas mesostigmatica CCMP1168]
Length = 334
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 17/175 (9%)
Query: 97 VAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--MGKLGCSGDS 154
+ K V + F NP Q+ ++ VK+ ++ L G+ + H + L + K G++
Sbjct: 28 IFKLVSKLIHYFLYSNPSYQLAIILVKNNSIEQISHLSGNKKHHNQGLYRIKKKQDLGEN 87
Query: 155 SLQNALDLVQGLLSQIPSYGHREVLIL----YSALSTCDPGDIMETIQKCKESKIRCSVI 210
SL+ A L + LLS +E++I Y + G ++KI+ SVI
Sbjct: 88 SLKTAFFLAKKLLSFNKKKSEQEIIIFMGGSYVSSVFHSFGSFFV------KNKIKFSVI 141
Query: 211 GLSAEMFICKHLCQDTGGSYSVALDESHF-----KELIMEHAPPPPAIAEFAIAN 260
+ F+ + L + TGG Y V +S+F L M P FAI N
Sbjct: 142 MFYEKTFLFETLVKITGGFYIVLKKDSNFDLISCMRLNMFRKTQIPKKVYFAIGN 196
>gi|496307|gb|AAA35101.1| stem loop mutation suppressor, partial [Saccharomyces cerevisiae]
Length = 62
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 6/54 (11%)
Query: 351 CFGCQQSL-LSSGNKPGLYVA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
CF CQ + +K G + C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 4 CFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 57
>gi|157870269|ref|XP_001683685.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68126751|emb|CAJ05184.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 446
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 30/188 (15%)
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 147
D+ P+ + + + FV + D PL+ +G+V ++DG+++ L + + L
Sbjct: 19 DYLPNYLLAMRPPLLRFVERYLDSTPLASLGVVVMRDGISHRLLPCTTNRNEIVDVLERD 78
Query: 148 L---GCSGDSSLQNALDLVQGLL-----------------SQIPSYGHR----------E 177
+ G SG++S++N L + L S + + R
Sbjct: 79 VFLHGGSGNTSMENGLRMAMSELVDMREVAALAAATAKKSSSVAARNPRAAWKGSATQLN 138
Query: 178 VLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDES 237
V++L ++++ DP D+ + IR SV+ L + + +TGG+ L+
Sbjct: 139 VIVLTASVTLIDPTDVFAVVNIMAVLSIRISVVSLVGAVHVFDVCTVETGGTLYCPLNYD 198
Query: 238 HFKELIME 245
H ++ E
Sbjct: 199 HLLHIMDE 206
>gi|66361323|pdb|1Z60|A Chain A, Solution Structure Of The Carboxy-Terminal Domain Of Human
Tfiih P44 Subunit
Length = 59
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 5/46 (10%)
Query: 351 CFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
C+GCQ L +YV C C+ FC++CD+++H+SLH+CPGC
Sbjct: 18 CYGCQGEL----KDQHVYV-CAVCQNVFCVDCDVFVHDSLHSCPGC 58
>gi|156341095|ref|XP_001620650.1| hypothetical protein NEMVEDRAFT_v1g147480 [Nematostella vectensis]
gi|156205835|gb|EDO28550.1| predicted protein [Nematostella vectensis]
Length = 93
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Query: 42 EALQEDESGFLRPIDNSAFYHAQYRR--------RL-RDRSLVATTARIQKAAEMDFRPS 92
EA++ED+ G L+ + + + ++ +R RL R L + E D +P+
Sbjct: 1 EAIREDDEGSLQTLVDELVHRSKRQRVAARPGNVRLGMMRHLYIIIDMSKAMEEADLKPN 60
Query: 93 RMAVVAKQVEAFVREFFDQNPLSQIGL 119
R++ AK +E F+ E+FDQNP+SQ+ +
Sbjct: 61 RLSCSAKLLENFITEYFDQNPISQVRI 87
>gi|736405|gb|AAA64503.1| BTF2p44 [Homo sapiens]
Length = 69
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 10/69 (14%)
Query: 328 PIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCKKHFCLECDIYIH 387
P+ F E+ PL + N R C+GCQ L +YV C C+ FC++CD+++H
Sbjct: 1 PLDAFQEI-PL---EEYNGER-FCYGCQGELKDQH----VYV-CAXCQNVFCVDCDVFVH 50
Query: 388 ESLHNCPGC 396
+SLH CPGC
Sbjct: 51 DSLHCCPGC 59
>gi|407926572|gb|EKG19539.1| Transcription factor Tfb4 [Macrophomina phaseolina MS6]
Length = 380
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 54/132 (40%), Gaps = 12/132 (9%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVAL-DESHFKELIMEHAPPPP 251
+M I + +I ++ L+ + + C TGG Y L E + L+M P
Sbjct: 218 VMNAIFAAQRQRIPIDILKLAGDTVFLQQACDATGGIYLKPLAPEGLLQYLMMAFLPDET 277
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTD--CRIC 309
A + + ++ F RA C CH+ V V +GY C C + CE P D C C
Sbjct: 278 ARKHLVLPSAGEVDF--RAA------CFCHRRV-VDIGYVCSVCLSIFCEPPADQTCPTC 328
Query: 310 GLQLVSSPHLAR 321
L S + R
Sbjct: 329 TNPLSVSSSITR 340
>gi|409080333|gb|EKM80693.1| hypothetical protein AGABI1DRAFT_119282 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 361
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 193 IMETI---QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD--ESHFKELIMEHA 247
IM ++ QK K + C V G + + TGGSY + L+ ++ + LIM
Sbjct: 162 IMNSVFSAQKLKVTIDVCQVFG--PDTVFLQQAAHLTGGSY-IHLERRDALLQYLIMAFL 218
Query: 248 PPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCR 307
PPPP A+ K+ F RA C CHK + V +G+ C C + C+ C
Sbjct: 219 PPPPIRKVLAVPTQDKVDF--RAA------CFCHKNI-VDIGFVCSVCLSIFCQPVPVCS 269
Query: 308 IC 309
C
Sbjct: 270 TC 271
>gi|426197233|gb|EKV47160.1| hypothetical protein AGABI2DRAFT_204058 [Agaricus bisporus var.
bisporus H97]
Length = 361
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 193 IMETI---QKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALD--ESHFKELIMEHA 247
IM ++ QK K + C V G + + TGGSY + L+ ++ + LIM
Sbjct: 162 IMNSVFSAQKLKVTIDVCQVFG--PDTVFLQQAAHLTGGSY-IHLERRDALLQYLIMAFL 218
Query: 248 PPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCR 307
PPPP A+ K+ F RA C CHK + V +G+ C C + C+ C
Sbjct: 219 PPPPIRKVLAVPTQDKVDF--RAA------CFCHKNI-VDIGFVCSVCLSIFCQPVPVCS 269
Query: 308 IC 309
C
Sbjct: 270 TC 271
>gi|392579844|gb|EIW72971.1| hypothetical protein TREMEDRAFT_70875 [Tremella mesenterica DSM
1558]
Length = 343
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKAL--- 144
D+ P+R A+ V D NP S +GL+T+ + L +P + I L
Sbjct: 20 DYPPTRFQAQAQAVSTVFTAKTDSNPESAVGLMTMAGKSPSLLV----TPTNDIGKLLSA 75
Query: 145 MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETI-QKCKES 203
MGK GDS A+ + Q L + R+ +I++ DP + + + +K +++
Sbjct: 76 MGKASIGGDSDFSTAVQIAQLALKHRENKNQRQRVIVFVGSPVSDPQEALVKLGKKLRKN 135
Query: 204 KIRCSVIGLSAE 215
+ V+ E
Sbjct: 136 NVLVDVVTFGEE 147
>gi|302496747|ref|XP_003010374.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
gi|291173917|gb|EFE29734.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
Length = 414
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH-FKELIMEHAPPPP 251
IM +I C+ I + L+ + + C T G Y ++LD F + +M P
Sbjct: 251 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPD- 308
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRIC 309
+ A NLI P R + C CH++V V VG+ C C + CE P +C C
Sbjct: 309 ---QRARRNLI---LPTRVDVDFRAACFCHRKV-VNVGFVCSICLSIFCEPPEGANCLTC 361
Query: 310 GLQL 313
G L
Sbjct: 362 GTHL 365
>gi|302656245|ref|XP_003019878.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
gi|291183651|gb|EFE39254.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
Length = 517
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH--FKELIMEHAPPP 250
IM +I C+ I + L+ + + C T G Y ++LD + L++ P
Sbjct: 354 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLP-- 410
Query: 251 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRI 308
+ A NLI P R + C CH++V V VG+ C C + CE P +C
Sbjct: 411 ---DQRARRNLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLT 463
Query: 309 CGLQL 313
CG L
Sbjct: 464 CGTHL 468
>gi|212529242|ref|XP_002144778.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
gi|210074176|gb|EEA28263.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
Length = 380
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 16/157 (10%)
Query: 172 SYGHREVLILYSALSTCDPGD----IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTG 227
S G + +++ S S+ D IM +I C+ I V LS + + T
Sbjct: 202 SLGLQSRILIVSVSSSTDSAHQYIPIMNSIFACQRLHIPIDVCKLSGDAVFLQQASDATR 261
Query: 228 GSY-SVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKV 286
G Y S++ + L+M P + + + + + F RA C CH+ V V
Sbjct: 262 GVYMSLSEPRGLLQYLMMAFLPDQRSRKHLIVPSRVDVDF--RAA------CFCHRRV-V 312
Query: 287 GVGYTCPRCKARVCELPT--DCRICGLQLVSSPHLAR 321
+G+ C C + CE P DC CG L + AR
Sbjct: 313 NIGFVCSICLSIFCEPPENGDCLTCGTHLEIGDYSAR 349
>gi|449683803|ref|XP_002159513.2| PREDICTED: general transcription factor IIH subunit 3-like [Hydra
magnipapillata]
Length = 291
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 27/215 (12%)
Query: 123 KDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGH------- 175
KDG +++ + + K L + S++ N L+ G L++ Y H
Sbjct: 86 KDGKYELFSEMNETLQCEFKRLFAE----SVSNMTNRPSLLAGALTKALCYIHSHDRTAN 141
Query: 176 ------REVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS 229
R ++I S+ S+ +M I + I L + TGG
Sbjct: 142 GRRTNARILIIKGSSDSSSQYMTVMNCIFAASKKNIVIDCCALQNNSGFMQQASDITGGV 201
Query: 230 YSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVG 289
Y D S E ++ P P + E K+ P + + C CHK++ V VG
Sbjct: 202 YFFIDDFSGMLEYLLWIFLPDPGLRE-------KLNLPTSSQIDYRAACFCHKQL-VDVG 253
Query: 290 YTCPRCKARVCELPTDCRICG--LQLVSSPHLARS 322
+ C C + C+ C C +L S P A+S
Sbjct: 254 FVCSVCLSIYCQFMPKCATCQTRFKLPSLPLNAKS 288
>gi|327299656|ref|XP_003234521.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
gi|326463415|gb|EGD88868.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
Length = 413
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH-FKELIMEHAPPPP 251
IM +I C+ I + L+ + + C T G Y ++LD F + +M P
Sbjct: 250 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPD- 307
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRIC 309
+ A NLI P R + C CH++V V VG+ C C + CE P +C C
Sbjct: 308 ---QRARRNLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLTC 360
Query: 310 GLQL 313
G L
Sbjct: 361 GTHL 364
>gi|242764012|ref|XP_002340688.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723884|gb|EED23301.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 380
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 91/238 (38%), Gaps = 30/238 (12%)
Query: 89 FRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI-KALMGK 147
+RP R VV +QV VRE S + + +A LT SHI + M
Sbjct: 121 YRPFR--VVEEQVLENVRELLASTDASDVSATSTM--LAGALT----LALSHINRRTMTW 172
Query: 148 LGCSGDSSLQNALDLVQGLLSQIP-----SYGHREVLILYSALSTCDPGD----IMETIQ 198
G+SS+ A + S G + +++ S S+ D IM +I
Sbjct: 173 TETHGNSSVDTANAATGSSSAAAVSGGNVSLGLQSRILIVSVSSSTDSAHQYIPIMNSIF 232
Query: 199 KCKESKIRCSVIGLSAEMFICKHLCQDTGGSY-SVALDESHFKELIMEHAPPPPAIAEFA 257
C+ I V LS + + T G Y S+ + L+M P +
Sbjct: 233 ACQRLHIPIDVCKLSGDAVFLQQASDATRGVYMSLTEPRGLLQYLMMAFLPDQRSRKHLV 292
Query: 258 IANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT--DCRICGLQL 313
+ + + + F RA C CH+ V V +G+ C C + CE P DC CG L
Sbjct: 293 LPSRVDVDF--RAA------CFCHRRV-VNIGFVCSICLSIFCEPPENGDCLTCGTHL 341
>gi|326480715|gb|EGE04725.1| TFIIH basal transcription factor complex p34 subunit [Trichophyton
equinum CBS 127.97]
Length = 415
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH-FKELIMEHAPPPP 251
IM +I C+ I + L+ + + C T G Y ++LD F + +M P
Sbjct: 252 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPD- 309
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRIC 309
+ A NLI P R + C CH++V V VG+ C C + CE P +C C
Sbjct: 310 ---QRARRNLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLTC 362
Query: 310 GLQL 313
G L
Sbjct: 363 GTHL 366
>gi|326473589|gb|EGD97598.1| transcription factor TFIIH subunit Tfb4 [Trichophyton tonsurans CBS
112818]
Length = 415
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH-FKELIMEHAPPPP 251
IM +I C+ I + L+ + + C T G Y ++LD F + +M P
Sbjct: 252 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLPD- 309
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRIC 309
+ A NLI P R + C CH++V V VG+ C C + CE P +C C
Sbjct: 310 ---QRARRNLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLTC 362
Query: 310 GLQL 313
G L
Sbjct: 363 GTHL 366
>gi|89096888|ref|ZP_01169779.1| possible D-amino acid dehydrogenase, large subunit [Bacillus sp.
NRRL B-14911]
gi|89088268|gb|EAR67378.1| possible D-amino acid dehydrogenase, large subunit [Bacillus sp.
NRRL B-14911]
Length = 459
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Query: 133 LGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVL-ILYSALSTCDPG 191
LG ++ M SG + L A+D + LLS S ++ L I+ + TCD G
Sbjct: 224 LGAYEKTAFNKSMDSFEASGWTPLAGAIDKARELLSAYNSTDYKNTLYIVSDGVETCD-G 282
Query: 192 DIMETIQKCKESKI--RCSVIGLSAE---MFICKHLCQDTGGSYSVALDESHFKELIMEH 246
D +E Q+ + S I + ++IG + K + + GG+Y+ D+ ++ +++
Sbjct: 283 DPVEAAQQLQGSNIEAKVNIIGFDVDDEGQKQLKEVAEAGGGTYATVRDKDELEDQVLKK 342
Query: 247 APP 249
P
Sbjct: 343 WKP 345
>gi|315052780|ref|XP_003175764.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
gi|311341079|gb|EFR00282.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
Length = 413
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH-FKELIMEHAPPPP 251
IM +I C+ I + L+ + + C T G Y ++LD F + +M P
Sbjct: 250 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIY-MSLDSPRGFLQYLMLAFLP-- 306
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRIC 309
+ A NLI P R + C CH++V V VG+ C C + CE P +C C
Sbjct: 307 --DQRARRNLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLTC 360
Query: 310 GLQL 313
G L
Sbjct: 361 GTHL 364
>gi|296815720|ref|XP_002848197.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
gi|238841222|gb|EEQ30884.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
Length = 413
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 10/123 (8%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
IM +I C+ I + L+ + + C T G Y F + +M P
Sbjct: 250 IMNSIFACQRLHIPIDICKLAGDAVFLQQACDATRGIYMSVDSPRGFLQYLMLAFLPDQR 309
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRICG 310
+ NL+ P R + C CH++V V VG+ C C + CE P +C CG
Sbjct: 310 VRR----NLV---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGANCLTCG 361
Query: 311 LQL 313
L
Sbjct: 362 THL 364
>gi|258567552|ref|XP_002584520.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905966|gb|EEP80367.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 398
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 10/123 (8%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
IM +I C+ I + LS + + C T G Y F + +M P
Sbjct: 235 IMNSIFACQRLHIPIDICKLSGDAVFLQQACDATRGIYVPVDHPLGFLQYLMVAFLP--- 291
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRICG 310
+ + ++LI P R + C CH++V V VG+ C C + CE P DC CG
Sbjct: 292 -DQRSRSHLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGADCLTCG 346
Query: 311 LQL 313
L
Sbjct: 347 THL 349
>gi|301122235|ref|XP_002908844.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262099606|gb|EEY57658.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 293
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 226 TGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK 285
TGG Y D S + ++ P P++ + + P + ++C CH+EV
Sbjct: 197 TGGIYYKPNDHSGLLQYLISIYLPDPSMRKL-------LKLPSQDSVDFRAMCFCHREV- 248
Query: 286 VGVGYTCPRCKARVCELPTDCRICGLQ 312
+ Y CP C + CE C CG++
Sbjct: 249 ISTAYVCPVCLSLFCEFRPICSTCGIR 275
>gi|348676264|gb|EGZ16082.1| hypothetical protein PHYSODRAFT_508027 [Phytophthora sojae]
Length = 298
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 226 TGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK 285
TGG Y D S + ++ P P++ + + P + ++C CH+EV
Sbjct: 202 TGGIYYKPNDHSGLLQYLISIYLPDPSMRKL-------LKLPSQDSVDFRAMCFCHREV- 253
Query: 286 VGVGYTCPRCKARVCELPTDCRICGLQ 312
+ Y CP C + CE C CG++
Sbjct: 254 ISTAYVCPVCLSLFCEFRPICSTCGIR 280
>gi|429729565|ref|ZP_19264224.1| von Willebrand factor type A domain protein [Corynebacterium durum
F0235]
gi|429149589|gb|EKX92567.1| von Willebrand factor type A domain protein [Corynebacterium durum
F0235]
Length = 747
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 20/148 (13%)
Query: 116 QIGLVTVKDGVAN-------------CLTDLGGSPESHIKALMGKLGCSGDSSLQNALDL 162
Q+ L+T G N L LGGS I A + L SG + + AL
Sbjct: 58 QLALLTYGTGTGNSDEEKEAGCKDVQTLVPLGGS-RDEIAAQIDSLVASGYTPIGPALLA 116
Query: 163 VQGLL-SQIPSYGHREVLILYSALSTCDPGDIMETIQKC--KESKIRCSVIGLSAEMFI- 218
+ L ++ R ++++ + TC P ++ E + + S + V+GL+A+ +
Sbjct: 117 AEKTLDTKKTEKNKRHIVLVSDGIDTCAPPEMAEVARDIHKRNSNVTIDVVGLNADETVR 176
Query: 219 --CKHLCQDTGGSYSVALDESHFKELIM 244
K L GG+Y+ A DE+ L+
Sbjct: 177 EQLKELAAAGGGTYADATDEASVSTLVT 204
>gi|307354884|ref|YP_003895935.1| hypothetical protein Mpet_2754 [Methanoplanus petrolearius DSM
11571]
gi|307158117|gb|ADN37497.1| conserved hypothetical protein [Methanoplanus petrolearius DSM
11571]
Length = 316
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 75/176 (42%), Gaps = 28/176 (15%)
Query: 88 DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGK 147
D+ P+R+ E + D +P +G+V + G A+ + L +S I+ L
Sbjct: 104 DYSPNRLEATKSAAEELIN---DLDPKDYVGIVVFESG-ASTASYLSPDKDSVIENLENI 159
Query: 148 LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIM--ETIQKCKESKI 205
+ G +++ + L L + IP+ ++V+IL S + G I E IQ K+S I
Sbjct: 160 MEKDGATAIGDGLSLGINMADSIPN--RKKVVILLSD-GVNNAGVISPDEAIQFAKDSDI 216
Query: 206 RCSVIGLSAEMFIC-------------------KHLCQDTGGSYSVALDESHFKEL 242
+ IG+ +E + K + +TGG Y ++D+ E+
Sbjct: 217 QVFTIGMGSEQPVVMGYDWFGNPQYAELDEATLKEIADETGGKYFKSVDDQTLNEI 272
>gi|303314233|ref|XP_003067125.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106793|gb|EER24980.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037386|gb|EFW19323.1| transcription factor TFIIH subunit Tfb4 [Coccidioides posadasii
str. Silveira]
Length = 395
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
IM +I C+ I + LS + + C T G Y F + +M P
Sbjct: 232 IMNSIFACQRLHIPIDICKLSGDAVFLQQACDATRGIYVPVDHPRGFLQYLMVAFLP--- 288
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRICG 310
+ + +LI P R + C CH++V V VG+ C C + CE P DC CG
Sbjct: 289 -DQRSRRHLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGADCLTCG 343
Query: 311 LQL 313
L
Sbjct: 344 THL 346
>gi|119174356|ref|XP_001239539.1| hypothetical protein CIMG_09160 [Coccidioides immitis RS]
gi|392869735|gb|EAS28255.2| transcription factor tfb4 [Coccidioides immitis RS]
Length = 396
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPA 252
IM +I C+ I + LS + + C T G Y F + +M P
Sbjct: 233 IMNSIFACQRLHIPIDICKLSGDAVFLQQACDATRGIYVPVDHPRGFLQYLMVAFLP--- 289
Query: 253 IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELP--TDCRICG 310
+ + +LI P R + C CH++V V VG+ C C + CE P DC CG
Sbjct: 290 -DQRSRRHLI---LPTRVDVDFRAACFCHRKV-VDVGFVCSICLSIFCEPPEGADCLTCG 344
Query: 311 LQL 313
L
Sbjct: 345 THL 347
>gi|255953875|ref|XP_002567690.1| Pc21g06450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589401|emb|CAP95542.1| Pc21g06450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 374
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESH--FKELIMEHAPPP 250
+M +I C+ I V LS + + T G Y +AL E + L+M P
Sbjct: 222 VMNSIFACQRLSIPIDVCKLSGDAVFLQQASDATKGVY-MALAEPRGLLQYLMMAFLPDQ 280
Query: 251 PAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT--DCRI 308
+ + + + F RA C CH+ V V VG+ C C + CE P DC
Sbjct: 281 RSRRHLVLPTRVDVDF--RAA------CFCHRRV-VDVGFVCSICLSIFCEPPPGGDCMT 331
Query: 309 CGLQL 313
CG L
Sbjct: 332 CGSHL 336
>gi|170596989|ref|XP_001902970.1| Zinc finger, C2H2 type family protein [Brugia malayi]
gi|158589013|gb|EDP28181.1| Zinc finger, C2H2 type family protein [Brugia malayi]
Length = 179
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 326 LFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLL--------SSGNKPGLYVACPKCKKH 377
L PI EV L + R R + C C++ ++ +G KP +C CKK+
Sbjct: 52 LVPIEKLMEVVKLSKQERRTRKKQRCEICRKEVIYMKSHMTTHTGEKP---YSCSICKKN 108
Query: 378 FCLECDIYIH------ESLHNCPGC-ESLRHSNPIVANEG 410
F D+ H E LH+CP C +S H + ++++ G
Sbjct: 109 FTQFGDMKKHMMIHTGEKLHSCPICRKSFTHKHHLLSHMG 148
>gi|449295631|gb|EMC91652.1| hypothetical protein BAUCODRAFT_300256 [Baudoinia compniacensis
UAMH 10762]
Length = 386
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 192 DIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPP 251
+IM I C+ + V+ L+ + + TGG Y ++L S + ++++
Sbjct: 226 EIMNCIFACQRMSVPIDVLKLAGDPVFLQQAADTTGGIY-MSLSTSTARAGLLQYLMFAY 284
Query: 252 AIAEFAIANLIKMGFPQRAGEGSI--SICSCHKEVKVGVGYTCPRCKARVCE-LPT-DCR 307
+ + A +LI G GEG + C CHK V V +G+ C C + CE LP C
Sbjct: 285 LMDQTARNHLIAPG----EGEGVDFRAACFCHKRV-VDIGFVCSICLSIFCEPLPDGTCL 339
Query: 308 ICGLQL 313
+CG L
Sbjct: 340 LCGSHL 345
>gi|443916791|gb|ELU37740.1| SEC14 cytosolic factor [Rhizoctonia solani AG-1 IA]
Length = 1011
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 4/120 (3%)
Query: 66 RRRLRDRSLVATTARIQKAAEM---DFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTV 122
RR +R T RI + M D++PSR A V D NP S +GL+T+
Sbjct: 674 RRNVRGDDTSVGTCRIDNSEYMRNGDYQPSRFGAQADAVNVVFTSKTDANPESTVGLMTL 733
Query: 123 KDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 182
L + I + + + SG L L++ Q L + R+ +I++
Sbjct: 734 AGKAPEVLV-TPTTNHGKILSALHQTKISGSVDLATGLNIAQLALKHRQNKNQRQRIIVF 792
>gi|121713686|ref|XP_001274454.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
clavatus NRRL 1]
gi|119402607|gb|EAW13028.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
clavatus NRRL 1]
Length = 386
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY-SVALDESHFKELIMEHAPPPP 251
IM I C+ + V LS + + T G Y S+A + L+M P
Sbjct: 232 IMNAIFACQRLHVPIDVCKLSGDAVFLQQASDATKGVYMSLAEPRGLLQYLMMAFLPDQR 291
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTD--CRIC 309
+ + + + F RA C CH+ V V +G+ C C + CE P + C C
Sbjct: 292 SRRHLVLPTRVDVDF--RAA------CFCHRRV-VDIGFVCSICLSIFCEPPENGGCLTC 342
Query: 310 GLQLVSSPHLAR 321
G L + + AR
Sbjct: 343 GTHLETGDYGAR 354
>gi|119479015|ref|XP_001259536.1| transcription factor TFIIH subunit Tfb4, putative [Neosartorya
fischeri NRRL 181]
gi|119407690|gb|EAW17639.1| transcription factor TFIIH subunit Tfb4, putative [Neosartorya
fischeri NRRL 181]
Length = 385
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY-SVALDESHFKELIMEHAPPPP 251
IM I C+ I V LS + + T G Y S++ + L+M P
Sbjct: 231 IMNCIFACQRLHIPIDVCKLSGDAVFLQQASDATKGVYMSLSEPRGLLQYLMMAFLPDQR 290
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT--DCRIC 309
+ I + + F RA C CH+ V V +G+ C C + CE P DC C
Sbjct: 291 SRRHLVIPTRVDVDF--RAA------CFCHRRV-VDIGFVCSICLSIFCEPPENGDCLTC 341
Query: 310 GLQL 313
G L
Sbjct: 342 GTHL 345
>gi|70997489|ref|XP_753492.1| transcription factor TFIIH subunit Tfb4 [Aspergillus fumigatus
Af293]
gi|66851128|gb|EAL91454.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
fumigatus Af293]
gi|159126779|gb|EDP51895.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
fumigatus A1163]
Length = 387
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY-SVALDESHFKELIMEHAPPPP 251
IM I C+ I V LS + + T G Y S++ + L+M P
Sbjct: 231 IMNCIFACQRLHIPIDVCKLSGDAVFLQQASDATKGVYMSLSEPRGLLQYLMMAFLPDQR 290
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT--DCRIC 309
+ I + + F RA C CH+ V V +G+ C C + CE P DC C
Sbjct: 291 SRRHLVIPTRVDVDF--RAA------CFCHRRV-VDIGFVCSICLSIFCEPPENGDCLTC 341
Query: 310 GLQL 313
G L
Sbjct: 342 GTHL 345
>gi|170585154|ref|XP_001897351.1| Zinc finger, C2H2 type family protein [Brugia malayi]
gi|158595226|gb|EDP33795.1| Zinc finger, C2H2 type family protein [Brugia malayi]
Length = 764
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 18/100 (18%)
Query: 326 LFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLL--------SSGNKPGLYVACPKCKKH 377
L PI EV L + R R + C C++ ++ +G KP +C CKK+
Sbjct: 310 LVPIEKLMEVVKLSKQERRTRKKQRCEICRKEVIYMKSHMTTHTGEKP---YSCSICKKN 366
Query: 378 FCLECDIYIH------ESLHNCPGC-ESLRHSNPIVANEG 410
F D+ H E LH+CP C +S H + ++++ G
Sbjct: 367 FTQFGDMKKHMMIHTGEKLHSCPICRKSFTHKHHLLSHMG 406
>gi|429730769|ref|ZP_19265415.1| von Willebrand factor type A domain protein [Corynebacterium durum
F0235]
gi|429147207|gb|EKX90237.1| von Willebrand factor type A domain protein [Corynebacterium durum
F0235]
Length = 661
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 169 QIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRC--SVIGLSAEMFICKHL---C 223
++PS G R+++++ + TC P + E ++ ++ + +VIGL+ + L
Sbjct: 148 ELPSQGARQIVLVSDGIDTCAPPPVCEVAKQIRQRGVDVVINVIGLNVDDQARSELQCVA 207
Query: 224 QDTGGSYSVALDESHFKELIM 244
++ GGSY+ A D + KE ++
Sbjct: 208 KEGGGSYADAKDAASLKEQLV 228
>gi|67515713|ref|XP_657742.1| hypothetical protein AN0138.2 [Aspergillus nidulans FGSC A4]
gi|40746160|gb|EAA65316.1| hypothetical protein AN0138.2 [Aspergillus nidulans FGSC A4]
Length = 384
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY-SVALDESHFKELIMEHAPPPP 251
IM I C+ I V LS + + T G Y S++ + L+M P
Sbjct: 232 IMNGIFACQRLHIPIDVCKLSGDAVFLQQASDATKGIYMSLSEPRGLLQYLMMAFLPDQR 291
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT--DCRIC 309
+ + + + F RA C CH+ V V +G+ C C + CE P DC C
Sbjct: 292 SRKHLILPTRVDVDF--RAA------CFCHRRV-VDIGFVCSICLSIFCEPPENGDCLTC 342
Query: 310 GLQLVSSPHLAR 321
G L + + A+
Sbjct: 343 GTHLDTGDYGAK 354
>gi|259489666|tpe|CBF90125.1| TPA: transcription factor TFIIH complex subunit (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 392
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 12/124 (9%)
Query: 193 IMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSY-SVALDESHFKELIMEHAPPPP 251
IM I C+ I V LS + + T G Y S++ + L+M P
Sbjct: 240 IMNGIFACQRLHIPIDVCKLSGDAVFLQQASDATKGIYMSLSEPRGLLQYLMMAFLPDQR 299
Query: 252 AIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPT--DCRIC 309
+ + + + F RA C CH+ V V +G+ C C + CE P DC C
Sbjct: 300 SRKHLILPTRVDVDF--RAA------CFCHRRV-VDIGFVCSICLSIFCEPPENGDCLTC 350
Query: 310 GLQL 313
G L
Sbjct: 351 GTHL 354
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,604,083,146
Number of Sequences: 23463169
Number of extensions: 272651809
Number of successful extensions: 1023640
Number of sequences better than 100.0: 530
Number of HSP's better than 100.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 1021162
Number of HSP's gapped (non-prelim): 887
length of query: 410
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 265
effective length of database: 8,957,035,862
effective search space: 2373614503430
effective search space used: 2373614503430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)