BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015267
(410 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86KZ2|TF2H2_DICDI General transcription factor IIH subunit 2 OS=Dictyostelium
discoideum GN=gtf2h2 PE=3 SV=2
Length = 461
Score = 315 bits (808), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 169/423 (39%), Positives = 247/423 (58%), Gaps = 42/423 (9%)
Query: 2 TNSERKRLN--------GEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLR 53
N++ KR N G A + +++D N WE + +++W + EDE G LR
Sbjct: 8 NNAQNKRTNRSLYDDEDGPAHVLQTNDEDGTNKY--KWENRF--EKTWLTIDEDEHG-LR 62
Query: 54 PIDNSAFYHAQYRRRLRDRS-LVATTARIQKAAE---------------MDFRPSRMAVV 97
P + R + +DR +++ R+++ + D +PSR V+
Sbjct: 63 PSNQEERNTRNRRLKNKDRDGILSQDQRVRRGMQRHLCLILDLSKTLSNQDLKPSRYQVL 122
Query: 98 AKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQ 157
+ VE F++EFFDQNP+SQ+ ++ K+ A +++L G+ HI+A+ + G+ S+Q
Sbjct: 123 LQNVELFIKEFFDQNPISQLSIIITKNSKAEKISELSGNRLRHIQAMKDAIAMEGEPSIQ 182
Query: 158 NALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMF 217
N+L++ L +P YG REVL ++S+L+TCDP + +TIQ K IR S I ++AE++
Sbjct: 183 NSLEVALSSLCYVPKYGSREVLFIFSSLTTCDPSSLQKTIQSLKNESIRVSFIHMAAELY 242
Query: 218 ICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISI 277
ICK + + T G+ V L+E HF E +M PPP I + A L++MGFPQ+ S
Sbjct: 243 ICKAIAEQTNGTSKVILNEEHFNESLMLKCQPPPTIGKTEAA-LVEMGFPQQITSTVPSP 301
Query: 278 CSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTP 337
C CH+++K GY CPRC + CELPTDC+IC L LVSSPHLARSYHHLF I F+EV
Sbjct: 302 CICHEKMKYS-GYICPRCGVKSCELPTDCQICNLSLVSSPHLARSYHHLFQIPLFNEVNW 360
Query: 338 LCLNDPRNRSRSTCFGCQQSLLSSGNKP--GLYVACPKCKKHFCLECDIYIHESLHNCPG 395
LN TC GC LSS K L+ +CP+C++ FCL+CD++IHESLHNCPG
Sbjct: 361 KELN-----KNVTCIGC----LSSSEKSILSLFFSCPRCQEIFCLDCDLFIHESLHNCPG 411
Query: 396 CES 398
CE+
Sbjct: 412 CEN 414
>sp|Q2TBV5|TF2H2_BOVIN General transcription factor IIH subunit 2 OS=Bos taurus GN=GTF2H2
PE=2 SV=1
Length = 395
Score = 301 bits (770), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 162/388 (41%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMGK--LGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKS 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR S+IGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA + +
Sbjct: 189 LKAAKIRVSIIGLSAEVRVCTALARETGGTYHVILDESHYKELLTHHVSPPPASSN-SEC 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+ CQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEHNGER-FCYACQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CSVCQNVFCVDCDVFVHDSLHCCPGC 385
>sp|A0JN27|TF2H2_RAT General transcription factor IIH subunit 2 OS=Rattus norvegicus
GN=Gtf2h2 PE=2 SV=1
Length = 396
Score = 299 bits (765), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 230/390 (58%), Gaps = 38/390 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA + +
Sbjct: 189 LKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLARHVSPPPA-SSGSEC 247
Query: 260 NLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVCELPTDC 306
+LI+MGFPQ + S S+ S + +G GY CP+C+A+ CELP +C
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYCELPVEC 306
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
+ICGL LVS+PHLARSYHHLFP+ F E+ PL + C+GCQ L
Sbjct: 307 KICGLTLVSAPHLARSYHHLFPLDAFQEI-PL----EEYKGERFCYGCQGEL----KDQH 357
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 VYV-CTVCRNVFCVDCDVFVHDSLHCCPGC 386
>sp|O74995|TFH47_SCHPO TFIIH basal transcription factor complex p47 subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfh47 PE=1 SV=1
Length = 421
Score = 297 bits (761), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 167/416 (40%), Positives = 230/416 (55%), Gaps = 31/416 (7%)
Query: 2 TNSERKRLNGEAEEEEEDEDDNLNGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFY 61
+ SE ++ NG + DDN WE Y RSW+ +QED G L +
Sbjct: 13 SESEDEQKNGRVKVRSRKTDDNEG---YTWEGEY--QRSWDIVQEDAEGSLVGVIAGLIQ 67
Query: 62 HAQYRRRLRD---------RSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQN 112
+ +R LRD R +V E DF R + K FV EFF+QN
Sbjct: 68 SGKRKRLLRDTTPLQRGIIRHMVLVLDLSNSMEERDFHHKRFDLQIKYASEFVLEFFEQN 127
Query: 113 PLSQIGLVTVKDGVANCLTDLGGSPESHIKALMGKLGCSGDSSLQNALDLVQGLLSQIPS 172
P+SQ+ ++ V DG+A+ +TDL G+P+SHI+ L CSG+ SLQNAL++ + LS I S
Sbjct: 128 PISQLSIIGVMDGIAHRITDLHGNPQSHIQKLKSLRDCSGNFSLQNALEMARASLSHIAS 187
Query: 173 YGHREVLILYSALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGS--- 229
+G REVLI++ ++ + DPGDI +TI IR ++GL+AE+ ICK +C T S
Sbjct: 188 HGTREVLIIFGSILSSDPGDIFKTIDALVHDSIRVRIVGLAAEVAICKEICNKTNSSTKN 247
Query: 230 -YSVALDESHFKELIMEHAPPPPA-IAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVG 287
Y V + E HF+EL++E PP A+ A+L+ MGFP + E S+C+CH G
Sbjct: 248 AYGVVISEQHFRELLLESTIPPATDSAKTTDASLVMMGFPSKVVEQLPSLCACHSIPSRG 307
Query: 288 VGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRS 347
G+ CPRCKA+VC LP +C C L L+ S HLARSYHHLFP+ + E+ P N P++
Sbjct: 308 -GFHCPRCKAKVCTLPIECPSCSLVLILSTHLARSYHHLFPLKNWSEI-PWSAN-PKS-- 362
Query: 348 RSTCFGCQQSLLSSGNKP------GLYVACPKCKKHFCLECDIYIHESLHNCPGCE 397
+ CF CQ P + ACP CK HFCL+CD++ HE LH C GC+
Sbjct: 363 -THCFACQLPFPKPPVSPFDESTSSMRYACPSCKNHFCLDCDVFAHEQLHECYGCQ 417
>sp|Q13888|TF2H2_HUMAN General transcription factor IIH subunit 2 OS=Homo sapiens
GN=GTF2H2 PE=1 SV=1
Length = 395
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/388 (42%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSIAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>sp|Q6P1K8|T2H2L_HUMAN General transcription factor IIH subunit 2-like protein OS=Homo
sapiens GN=GTF2H2C PE=2 SV=1
Length = 395
Score = 289 bits (740), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 164/388 (42%), Positives = 230/388 (59%), Gaps = 35/388 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDESG L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKEAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDESH+KEL+ H PPPA +
Sbjct: 189 LKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHLSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISICSCHKEVKVGV---GYTCPRCKARVCELPTDCRI 308
+LI+MGFPQ + S S+ + G+ GY CP+C+A+ CELP +C+I
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDGNTEPGLTLGGYFCPQCRAKYCELPVECKI 307
Query: 309 CGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLY 368
CGL LVS+PHLARSYHHLFP+ F E+ PL + N R C+GCQ L +Y
Sbjct: 308 CGLTLVSAPHLARSYHHLFPLDAFQEI-PL---EEYNGER-FCYGCQGEL----KDQHVY 358
Query: 369 VACPKCKKHFCLECDIYIHESLHNCPGC 396
V C C+ FC++CD+++H+SLH CPGC
Sbjct: 359 V-CAVCQNVFCVDCDVFVHDSLHCCPGC 385
>sp|Q04673|SSL1_YEAST Suppressor of stem-loop protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSL1 PE=1 SV=1
Length = 461
Score = 288 bits (736), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 227/395 (57%), Gaps = 30/395 (7%)
Query: 25 NGGLEAWERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLV 75
NGG AWE RSW+ ++ D+ G + + S + R ++ RSL+
Sbjct: 71 NGGY-AWEDEIK--RSWDLVKVDDEGDMASLVASIVEARKKRTAKKNITPYQRGIIRSLI 127
Query: 76 ATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGG 135
T + E D RP+R A++ + FV EFFDQNP+SQ+G++ +++G+A ++ + G
Sbjct: 128 LTLDCSEAMLEKDLRPNRHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQLVSQVSG 187
Query: 136 SPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDI 193
+P+ HI AL + K G+ SLQNAL++ +GLL +P++ REVLI++ +LST DPGDI
Sbjct: 188 NPQDHIDALKSIRKQEPKGNPSLQNALEMARGLLLPVPAHCTREVLIVFGSLSTTDPGDI 247
Query: 194 METIQKCKESKIRCSVIGLSAEMFICKHLCQDTG----GSYSVALDESHFKELIMEHAPP 249
+TI KIR V+GLSA++ ICK LC+ T Y + LDE+H KEL E P
Sbjct: 248 HQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKILLDETHLKELFNEAVTP 307
Query: 250 PPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRIC 309
P L+KMGFP R E + + CSCH ++ G GY CP C ++VC LPT C C
Sbjct: 308 LPVNKINKGFTLVKMGFPTRIFEDTPTFCSCHSKLVYG-GYFCPNCHSKVCSLPTVCPCC 366
Query: 310 GLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSL-LSSGNKPGLY 368
L L+ S HLARSYHHL P+ F EV + RS CF CQ + +K G
Sbjct: 367 DLMLILSTHLARSYHHLMPLKTFAEVP----TTEKFRSED-CFSCQSRFPILKNHKNGKL 421
Query: 369 VA-----CPKCKKHFCLECDIYIHESLHNCPGCES 398
+ C CK+ FC++CD++IHE LHNCPGCES
Sbjct: 422 LTSSRYRCEDCKQEFCVDCDVFIHEILHNCPGCES 456
>sp|Q9JIB4|TF2H2_MOUSE General transcription factor IIH subunit 2 OS=Mus musculus
GN=Gtf2h2 PE=1 SV=1
Length = 396
Score = 285 bits (730), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 159/390 (40%), Positives = 228/390 (58%), Gaps = 38/390 (9%)
Query: 31 WERSYADDRSWEALQEDESGFLRPIDNSAFYHAQYRRRLRD---------RSLVATTARI 81
WE Y +R+WE L+EDE+G L+ + A+ +R R L
Sbjct: 11 WEGGY--ERTWEILKEDETGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRHLYVVVDGS 68
Query: 82 QKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKDGVANCLTDLGGSPESHI 141
+ + D +P+R+ K +E FV E+FDQNP+SQIG++ K A LT+L G+P HI
Sbjct: 69 RTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTELSGNPRKHI 128
Query: 142 KALMG--KLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDPGDIMETIQK 199
+L + C G+ SL N+L + L +P + REVLI++S+L+TCDP +I + I+
Sbjct: 129 TSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPSNIYDLIKT 188
Query: 200 CKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKELIMEHAPPPPAIAEFAIA 259
K +KIR SVIGLSAE+ +C L ++TGG+Y V LDE+H+KEL+ H PPPA +
Sbjct: 189 LKTAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDETHYKELLAHHVSPPPASSSSE-C 247
Query: 260 NLIKMGFPQRA--------GEGSISIC-----SCHKEVKVGVGYTCPRCKARVCELPTDC 306
+LI+MGFPQ + S S+ S + +G GY CP+C+A+ CELP +C
Sbjct: 248 SLIRMGFPQHTIASLSDQDAKPSFSMAHLDNNSTEPGLTLG-GYFCPQCRAKYCELPVEC 306
Query: 307 RICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPG 366
+ICGL LVS+PHLARSYHHLFP+ F E++ + C+GCQ L
Sbjct: 307 KICGLTLVSAPHLARSYHHLFPLDAFQEISL-----EEYKGERFCYGCQGEL----KDQH 357
Query: 367 LYVACPKCKKHFCLECDIYIHESLHNCPGC 396
+YV C C+ FC++CD+++H+SLH CPGC
Sbjct: 358 VYV-CTVCQNVFCVDCDVFVHDSLHCCPGC 386
>sp|P34567|TF2H2_CAEEL General transcription factor IIH subunit 2 OS=Caenorhabditis
elegans GN=T16H12.4 PE=3 SV=3
Length = 376
Score = 247 bits (631), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 150/396 (37%), Positives = 215/396 (54%), Gaps = 41/396 (10%)
Query: 20 EDDNLNGGLEAWERSYADDRSW-EALQEDESGFLRPIDNSAFYHAQYRRR---------- 68
+DD G WE YA+ + + L EDE G + + A Y A +R+
Sbjct: 2 DDDEQKG--YTWEAGYAEGLNINDVLVEDEGGSIE--KSIAKYVADSKRKARLTKRPERI 57
Query: 69 ----LRDRSLVATTARIQKAAEMDFRPSRMAVVAKQVEAFVREFFDQNPLSQIGLVTVKD 124
+R +V +R + M PSR VV K ++ F+ FF+QNP++QIGL+T KD
Sbjct: 58 RLGIMRHVMIVIDCSRFMTSKAMP--PSRFVVVMKALQTFLDRFFEQNPIAQIGLITCKD 115
Query: 125 GVANCLTDLGGSPESHIKAL--MGKLGCSGDSSLQNALDLVQGLLSQIPSYGHREVLILY 182
A+ LT + G+ ++L + + C GD SLQNAL L L +P + REV+++
Sbjct: 116 RKADRLTMMTGNIRVLKESLNTLTEAFCGGDFSLQNALQLACANLKGMPGHVSREVVLVI 175
Query: 183 SALSTCDPGDIMETIQKCKESKIRCSVIGLSAEMFICKHLCQDTGGSYSVALDESHFKEL 242
SALST DPG+I TI+ K IRCS IGLSAEMF+CK + + T G YSVALD H + L
Sbjct: 176 SALSTIDPGNIYSTIETMKRMNIRCSAIGLSAEMFVCKEMAKATKGEYSVALDPDHLQLL 235
Query: 243 IMEHAPPPPAIAEFAIANLIKMGFPQRAGEGSISICSCHKEVK--VGVGYTCPRCKARVC 300
+H PP + A+ + N I +GFP + S C CH + K G+ C +C AR C
Sbjct: 236 FSKHTLPPSS-AKSSECNAIHVGFPHHELITTRSFCVCHPDTKPISSRGFICTQCGARHC 294
Query: 301 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 360
+P +C +C L LV++P LAR++ HL P++ F+++ +R C+ C+ L
Sbjct: 295 SIPAECPVCKLTLVAAPQLARAFRHLQPLSAFEQI---------EVTRGFCYACETRLSG 345
Query: 361 SGNKPGLYVACPKCKKHFCLECDIYIHESLHNCPGC 396
G + C C+ FCL+CD +HESLH CPGC
Sbjct: 346 EGFR------CGSCQLVFCLDCDTLLHESLHVCPGC 375
>sp|O74366|TFB4_SCHPO RNA polymerase II transcription factor B subunit 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb4 PE=1 SV=1
Length = 297
Score = 32.7 bits (73), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 264 MGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVSSPHLARSY 323
+ P +A + C CHK+V + +G+ C C + CE C C + P +++
Sbjct: 238 LNTPNQANVDFRATCFCHKKV-LDIGFVCSVCLSIFCEPRVHCSTCHTKFTVEP-MSKKL 295
Query: 324 H 324
H
Sbjct: 296 H 296
>sp|Q9NYT6|ZN226_HUMAN Zinc finger protein 226 OS=Homo sapiens GN=ZNF226 PE=1 SV=2
Length = 803
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 295 CKARVCELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGC 354
CK E P +C CG + HL PF C ++ SR++
Sbjct: 354 CKVHTAEKPYNCEECGRAFSQASHLQDHQRLHTGEKPFK-----CDACGKSFSRNSHLQS 408
Query: 355 QQSLLSSGNKPGLYVACPKCKKHFCLECDIYIHESLH 391
Q + +G KP C +C K F ++YIH+ +H
Sbjct: 409 HQRV-HTGEKP---YKCEECGKGFICSSNLYIHQRVH 441
>sp|Q86IB5|TF2H3_DICDI General transcription factor IIH subunit 3 OS=Dictyostelium
discoideum GN=gtf2h3 PE=3 SV=1
Length = 372
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 264 MGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQL 313
+ +P + C CHK + V +GY C C + C + C CG +
Sbjct: 296 LAYPTLKSVDYRASCFCHKRI-VDIGYVCSVCLSIFCGHSSSCSTCGTKF 344
>sp|Q68H95|REPI1_RAT Replication initiator 1 OS=Rattus norvegicus GN=Repin1 PE=2 SV=1
Length = 548
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 256 FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 315
F + +++ Q GE + C K + + E P C CG +
Sbjct: 365 FRLERFLRLHQRQHTGERPFTCTECGKNFGKKT-HLVAHSRVHSGERPFACEECGRRFSQ 423
Query: 316 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCK 375
HLA P PF V P C R++ + + +G KP YV CP C
Sbjct: 424 GSHLAAHRRDHAPERPF--VCPDCGKAFRHKP----YLAAHRRIHTGEKP--YV-CPDCG 474
Query: 376 KHFCLECDIYIHESLHN------CPGCE 397
K F + ++ H +H CP C+
Sbjct: 475 KAFSQKSNLVSHRRIHTGERPYACPDCD 502
>sp|Q0VCC5|REPI1_BOVIN Replication initiator 1 OS=Bos taurus GN=REPIN1 PE=2 SV=1
Length = 559
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 15/103 (14%)
Query: 301 ELPTDCRICGLQLVSSPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLS 360
E P C CG + HLA P PF V P C R++ + +
Sbjct: 420 ERPFACEECGRRFSQGSHLAAHRRDHAPERPF--VCPDCGKAFRHKP----YLAAHRRIH 473
Query: 361 SGNKPGLYVACPKCKKHFCLECDIYIHESLHN------CPGCE 397
+G KP YV CP+C K F + ++ H +H CP C+
Sbjct: 474 TGEKP--YV-CPECGKAFSQKSNLVSHRRIHTGERPYACPDCD 513
>sp|Q5U4E2|REPI1_MOUSE Replication initiator 1 OS=Mus musculus GN=Repin1 PE=2 SV=1
Length = 545
Score = 32.0 bits (71), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 16/148 (10%)
Query: 256 FAIANLIKMGFPQRAGEGSISICSCHKEVKVGVGYTCPRCKARVCELPTDCRICGLQLVS 315
F + +++ Q GE + C K + + E P C CG +
Sbjct: 362 FRLERFLRLHQRQHTGERPFACTECGKNFGKKT-HLVAHSRVHSGERPFACEECGRRFSQ 420
Query: 316 SPHLARSYHHLFPIAPFDEVTPLCLNDPRNRSRSTCFGCQQSLLSSGNKPGLYVACPKCK 375
HLA P PF V P C R++ + + +G KP YV CP C
Sbjct: 421 GSHLAAHRRDHAPERPF--VCPDCGKAFRHKP----YLAAHRRIHTGEKP--YV-CPDCG 471
Query: 376 KHFCLECDIYIHESLHN------CPGCE 397
K F + ++ H +H CP C+
Sbjct: 472 KAFSQKSNLVSHRRIHTGERPYACPDCD 499
>sp|Q7NA83|ASNA_PHOLL Aspartate--ammonia ligase OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=asnA PE=3 SV=1
Length = 330
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 93 RMAVVAKQVE-AFVREFFDQNPLSQIGLVTVKDGVANCLTD-LGGSPESHIKALMGKLGC 150
+ + + KQ + +FV+ FF + S++GL+ V+ + +CL D + + H KA+ K+
Sbjct: 2 KKSFIEKQQQISFVKSFFSRLLESKLGLIEVQGPILSCLGDGIQDNLSGHEKAVQVKVKT 61
Query: 151 SGDSSLQNALDLVQGLLSQIPSYGHREVLILYSALSTCDP 190
DS+ + L + + +G + LY+ + P
Sbjct: 62 LPDSTFEVVHSLAKWKRRTLGRFGFQPEQGLYTHMKALRP 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,427,224
Number of Sequences: 539616
Number of extensions: 6662110
Number of successful extensions: 28273
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 28083
Number of HSP's gapped (non-prelim): 211
length of query: 410
length of database: 191,569,459
effective HSP length: 120
effective length of query: 290
effective length of database: 126,815,539
effective search space: 36776506310
effective search space used: 36776506310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)