Query 015269
Match_columns 410
No_of_seqs 254 out of 1756
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:42:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1485 Mitochondrial Fe2+ tra 100.0 3.7E-63 8E-68 485.9 33.3 328 75-402 70-410 (412)
2 COG0053 MMT1 Predicted Co/Zn/C 100.0 3.7E-51 8E-56 399.6 37.6 286 107-398 5-296 (304)
3 PRK09509 fieF ferrous iron eff 100.0 4.6E-50 1E-54 392.8 38.5 276 112-393 8-288 (299)
4 PRK03557 zinc transporter ZitB 100.0 4.9E-48 1.1E-52 380.2 34.5 278 113-399 17-299 (312)
5 TIGR01297 CDF cation diffusion 100.0 3.3E-46 7.1E-51 359.7 31.1 261 127-392 2-268 (268)
6 COG1230 CzcD Co/Zn/Cd efflux s 100.0 2E-40 4.3E-45 317.9 32.2 274 110-392 17-294 (296)
7 PF01545 Cation_efflux: Cation 100.0 9.2E-43 2E-47 338.2 14.9 273 117-394 1-283 (284)
8 KOG1484 Putative Zn2+ transpor 100.0 1.1E-26 2.4E-31 221.9 25.4 269 114-393 34-348 (354)
9 KOG1482 Zn2+ transporter [Inor 99.9 1.2E-26 2.6E-31 224.8 20.7 280 112-399 70-373 (379)
10 COG3965 Predicted Co/Zn/Cd cat 99.9 7.4E-26 1.6E-30 208.5 23.4 274 112-391 17-308 (314)
11 KOG1483 Zn2+ transporter ZNT1 99.9 1.5E-26 3.2E-31 224.8 14.9 270 115-393 9-371 (404)
12 KOG2802 Membrane protein HUEL 99.8 5.5E-18 1.2E-22 163.2 11.8 207 111-359 203-434 (503)
13 COG0053 MMT1 Predicted Co/Zn/C 98.2 1.2E-05 2.7E-10 79.0 12.2 98 111-216 117-214 (304)
14 TIGR01297 CDF cation diffusion 98.1 2.5E-05 5.4E-10 75.2 11.2 94 114-215 97-190 (268)
15 PRK09509 fieF ferrous iron eff 98.0 5.2E-05 1.1E-09 74.5 12.4 93 115-215 119-211 (299)
16 PRK03557 zinc transporter ZitB 97.3 0.0018 4E-08 64.0 11.0 90 118-215 129-218 (312)
17 KOG1485 Mitochondrial Fe2+ tra 96.1 0.016 3.5E-07 58.5 7.5 93 115-215 231-323 (412)
18 PF01545 Cation_efflux: Cation 93.5 0.088 1.9E-06 50.8 4.4 92 117-215 109-203 (284)
19 PF00873 ACR_tran: AcrB/AcrD/A 90.0 32 0.00069 39.7 20.5 48 345-392 556-603 (1021)
20 COG1230 CzcD Co/Zn/Cd efflux s 89.9 5 0.00011 39.4 11.9 75 238-312 36-118 (296)
21 PF14535 AMP-binding_C_2: AMP- 85.4 9.9 0.00021 30.5 9.4 72 320-392 6-79 (96)
22 COG4858 Uncharacterized membra 85.1 30 0.00066 31.6 12.9 100 194-297 102-207 (226)
23 PF03780 Asp23: Asp23 family; 83.5 11 0.00024 30.6 9.1 52 339-390 50-105 (108)
24 PF07444 Ycf66_N: Ycf66 protei 82.4 17 0.00036 28.8 9.0 46 258-303 33-81 (84)
25 TIGR03406 FeS_long_SufT probab 79.5 16 0.00034 33.1 9.2 80 317-398 72-162 (174)
26 COG4956 Integral membrane prot 79.3 54 0.0012 32.4 13.1 110 260-370 78-203 (356)
27 KOG1484 Putative Zn2+ transpor 78.5 25 0.00054 35.0 10.8 85 228-312 39-131 (354)
28 PF01883 DUF59: Domain of unkn 78.0 13 0.00027 28.0 7.1 64 321-387 2-72 (72)
29 TIGR02898 spore_YhcN_YlaJ spor 76.2 24 0.00052 31.4 9.2 70 318-392 54-124 (158)
30 TIGR02945 SUF_assoc FeS assemb 75.6 26 0.00057 28.1 8.7 52 346-400 37-88 (99)
31 PF09580 Spore_YhcN_YlaJ: Spor 72.1 19 0.00042 32.1 7.9 70 316-392 73-143 (177)
32 PF10934 DUF2634: Protein of u 71.5 19 0.00042 30.0 7.1 51 306-356 52-107 (112)
33 COG2151 PaaD Predicted metal-s 68.9 59 0.0013 27.2 9.3 73 315-393 9-93 (111)
34 PF13710 ACT_5: ACT domain; PD 65.9 20 0.00042 26.6 5.4 61 317-385 3-63 (63)
35 cd04870 ACT_PSP_1 CT domains f 64.0 22 0.00048 26.8 5.6 58 316-378 9-66 (75)
36 PRK14646 hypothetical protein; 62.0 40 0.00088 29.8 7.6 60 319-378 5-68 (155)
37 PRK14647 hypothetical protein; 60.5 44 0.00096 29.6 7.6 46 334-379 23-68 (159)
38 PRK14640 hypothetical protein; 58.8 45 0.00096 29.4 7.3 46 334-379 21-66 (152)
39 COG1302 Uncharacterized protei 57.6 1.1E+02 0.0023 26.5 9.1 84 303-391 26-113 (131)
40 PRK14634 hypothetical protein; 56.5 49 0.0011 29.3 7.1 47 334-380 22-70 (155)
41 TIGR03221 muco_delta muconolac 56.4 73 0.0016 25.6 7.3 23 348-370 2-24 (90)
42 PRK00907 hypothetical protein; 55.3 56 0.0012 26.3 6.6 66 310-384 22-90 (92)
43 PRK11152 ilvM acetolactate syn 53.5 88 0.0019 24.2 7.3 63 316-387 13-75 (76)
44 PRK14638 hypothetical protein; 52.8 66 0.0014 28.3 7.3 45 334-378 23-68 (150)
45 COG2921 Uncharacterized conser 51.8 73 0.0016 25.5 6.5 67 310-385 20-89 (90)
46 PRK14637 hypothetical protein; 51.8 1.1E+02 0.0024 26.9 8.6 69 319-389 10-78 (151)
47 COG2098 Uncharacterized protei 51.8 24 0.00052 29.2 4.0 39 360-398 34-72 (116)
48 PRK02047 hypothetical protein; 50.8 69 0.0015 25.6 6.6 66 311-384 22-89 (91)
49 PRK10263 DNA translocase FtsK; 50.6 3.8E+02 0.0083 32.0 14.6 29 267-295 142-170 (1355)
50 cd04900 ACT_UUR-like_1 ACT dom 49.7 76 0.0016 23.7 6.4 42 316-359 11-52 (73)
51 PRK14633 hypothetical protein; 48.7 81 0.0018 27.7 7.3 57 320-379 7-63 (150)
52 PF00368 HMG-CoA_red: Hydroxym 48.6 1E+02 0.0023 31.3 8.9 67 334-400 139-206 (373)
53 PRK00341 hypothetical protein; 48.3 71 0.0015 25.6 6.2 65 310-383 22-88 (91)
54 PRK00092 ribosome maturation p 47.9 1.2E+02 0.0026 26.6 8.3 59 319-379 9-67 (154)
55 cd04869 ACT_GcvR_2 ACT domains 47.2 81 0.0018 23.7 6.4 54 316-374 9-68 (81)
56 cd04928 ACT_TyrKc Uncharacteri 46.6 1.2E+02 0.0025 23.0 6.8 57 316-376 11-67 (68)
57 PRK11023 outer membrane lipopr 46.5 38 0.00083 30.9 5.1 69 309-391 80-151 (191)
58 PRK14632 hypothetical protein; 45.8 99 0.0021 27.8 7.5 56 321-379 12-67 (172)
59 PRK00106 hypothetical protein; 45.1 56 0.0012 34.9 6.6 62 320-388 460-525 (535)
60 PF06570 DUF1129: Protein of u 43.9 2.6E+02 0.0056 25.7 14.4 18 231-248 185-202 (206)
61 cd00643 HMG-CoA_reductase_clas 43.2 2E+02 0.0043 29.7 9.9 80 321-400 152-232 (403)
62 PRK12704 phosphodiesterase; Pr 39.8 74 0.0016 33.9 6.6 62 320-388 445-510 (520)
63 COG1183 PssA Phosphatidylserin 39.3 3.1E+02 0.0067 26.0 10.0 84 226-311 38-121 (234)
64 PF01037 AsnC_trans_reg: AsnC 38.6 1.3E+02 0.0028 22.0 6.2 61 318-390 10-71 (74)
65 PF02790 COX2_TM: Cytochrome C 38.4 1.1E+02 0.0025 23.3 6.0 31 170-200 50-80 (84)
66 PRK10764 potassium-tellurite e 38.2 3.5E+02 0.0075 26.7 10.8 25 187-211 11-35 (324)
67 PF13291 ACT_4: ACT domain; PD 38.0 1.7E+02 0.0038 21.9 8.9 60 317-385 17-78 (80)
68 PRK11179 DNA-binding transcrip 36.4 1.3E+02 0.0028 26.1 6.7 65 317-392 80-144 (153)
69 PRK14639 hypothetical protein; 35.9 1.2E+02 0.0026 26.4 6.2 46 334-379 12-57 (140)
70 PHA02975 hypothetical protein; 35.7 2E+02 0.0043 21.9 6.7 33 183-215 2-36 (69)
71 TIGR03319 YmdA_YtgF conserved 35.5 1.2E+02 0.0026 32.3 7.3 62 320-388 439-504 (514)
72 PRK14636 hypothetical protein; 35.4 2.4E+02 0.0052 25.5 8.3 63 318-382 6-70 (176)
73 PF13740 ACT_6: ACT domain; PD 35.3 1.7E+02 0.0037 22.0 6.5 57 316-378 12-68 (76)
74 PLN02601 beta-carotene hydroxy 35.2 4.3E+02 0.0094 25.7 11.3 20 259-278 179-198 (303)
75 PF09685 Tic20: Tic20-like pro 35.1 2.3E+02 0.005 22.6 9.3 21 157-177 84-104 (109)
76 TIGR02865 spore_II_E stage II 34.6 5.7E+02 0.012 28.7 12.8 38 173-210 144-181 (764)
77 PRK14635 hypothetical protein; 34.3 2.6E+02 0.0057 24.8 8.3 45 334-378 20-68 (162)
78 PRK06737 acetolactate synthase 33.9 2.2E+02 0.0048 22.0 7.0 63 316-386 12-74 (76)
79 PRK14645 hypothetical protein; 33.9 3.1E+02 0.0067 24.2 8.6 58 320-379 12-71 (154)
80 KOG1482 Zn2+ transporter [Inor 32.9 1.9E+02 0.0042 29.3 7.8 69 245-313 94-170 (379)
81 COG3978 Acetolactate synthase 32.1 1.9E+02 0.0041 22.8 5.9 65 314-387 11-75 (86)
82 cd04888 ACT_PheB-BS C-terminal 32.1 2E+02 0.0044 21.0 7.1 63 317-387 11-74 (76)
83 PF11381 DUF3185: Protein of u 32.1 2.1E+02 0.0045 21.1 6.1 47 186-237 6-55 (59)
84 cd04872 ACT_1ZPV ACT domain pr 30.1 79 0.0017 24.5 3.9 53 316-374 11-65 (88)
85 PF01889 DUF63: Membrane prote 29.4 5.4E+02 0.012 25.0 10.6 46 225-270 145-195 (273)
86 PF05105 Phage_holin_4: Holin 28.6 3.4E+02 0.0073 22.4 13.4 38 284-323 74-111 (118)
87 PRK14643 hypothetical protein; 28.6 2.8E+02 0.0061 24.7 7.5 45 334-378 24-72 (164)
88 TIGR00816 tdt C4-dicarboxylate 28.6 5.2E+02 0.011 25.3 10.3 20 280-299 100-119 (320)
89 PRK14631 hypothetical protein; 28.4 2.7E+02 0.0059 25.1 7.4 45 334-378 23-85 (174)
90 smart00267 GGDEF diguanylate c 28.3 3.3E+02 0.0071 22.2 8.1 66 309-383 50-116 (163)
91 PRK11895 ilvH acetolactate syn 28.3 2.7E+02 0.0058 24.8 7.3 64 316-387 12-75 (161)
92 PRK10929 putative mechanosensi 28.3 1E+03 0.023 28.0 23.8 23 114-136 521-543 (1109)
93 PRK00194 hypothetical protein; 27.9 1E+02 0.0022 24.0 4.1 40 316-358 13-53 (90)
94 COG0779 Uncharacterized protei 27.8 4.3E+02 0.0093 23.4 9.0 45 334-378 23-67 (153)
95 PRK04998 hypothetical protein; 26.8 3.2E+02 0.0069 21.5 7.2 62 311-383 21-85 (88)
96 PRK10503 multidrug efflux syst 26.7 1.1E+03 0.023 27.6 20.2 45 346-390 566-610 (1040)
97 PF02038 ATP1G1_PLM_MAT8: ATP1 26.0 94 0.002 22.1 3.1 28 174-202 6-33 (50)
98 PRK11281 hypothetical protein; 26.0 1.1E+03 0.025 27.7 22.8 22 35-56 459-480 (1113)
99 PRK14641 hypothetical protein; 25.6 3.2E+02 0.007 24.6 7.3 44 334-377 24-67 (173)
100 PF02576 DUF150: Uncharacteris 25.2 2.5E+02 0.0053 24.1 6.4 45 334-378 11-55 (141)
101 TIGR00119 acolac_sm acetolacta 24.9 3.6E+02 0.0078 23.9 7.5 64 316-387 11-74 (157)
102 PF11654 DUF2665: Protein of u 24.9 67 0.0014 22.6 2.2 19 280-298 4-22 (47)
103 PF04972 BON: BON domain; Int 24.1 48 0.001 23.9 1.5 30 309-338 29-58 (64)
104 cd04874 ACT_Af1403 N-terminal 24.0 2.6E+02 0.0057 19.7 6.7 61 317-388 11-72 (72)
105 PF11712 Vma12: Endoplasmic re 24.0 4.6E+02 0.01 22.5 10.2 47 117-163 77-126 (142)
106 TIGR02159 PA_CoA_Oxy4 phenylac 23.5 3.2E+02 0.007 23.8 6.8 45 345-393 24-68 (146)
107 TIGR00013 taut 4-oxalocrotonat 23.2 2.8E+02 0.0061 19.7 5.6 41 350-391 3-45 (63)
108 PF12327 FtsZ_C: FtsZ family, 23.1 1.9E+02 0.0041 23.2 4.9 29 350-378 39-67 (95)
109 PF06570 DUF1129: Protein of u 22.1 6.1E+02 0.013 23.2 14.5 28 188-215 81-108 (206)
110 cd02411 archeal_30S_S3_KH K ho 21.7 2.8E+02 0.006 21.6 5.5 68 322-390 14-81 (85)
111 cd04871 ACT_PSP_2 ACT domains 21.2 2.6E+02 0.0056 21.7 5.3 61 310-374 4-71 (84)
112 PRK14856 nhaA pH-dependent sod 20.6 9.8E+02 0.021 25.0 13.6 82 184-269 67-148 (438)
113 PF05297 Herpes_LMP1: Herpesvi 20.2 34 0.00074 33.3 0.0 14 182-195 77-90 (381)
114 cd04875 ACT_F4HF-DF N-terminal 20.2 3.6E+02 0.0079 19.8 7.4 47 316-363 9-57 (74)
No 1
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-63 Score=485.91 Aligned_cols=328 Identities=47% Similarity=0.666 Sum_probs=298.3
Q ss_pred hhHHHHHHHHHHHhhHHhhhhhccccCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHH
Q 015269 75 GEKEYYESQFATLKSFEEVDVLVDSDCFI-----EEDLQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLD 149 (410)
Q Consensus 75 ~~~~fy~~q~~~i~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdald 149 (410)
++.+||.+|.++++.|.++.........+ ++.+.+.+.++++.|+++++|++++++|+++|+.+||+|++||++|
T Consensus 70 ~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~l~~Nigl~vaK~~as~~sgS~aIiAsavd 149 (412)
T KOG1485|consen 70 NVSEFYSSQKSLLQKFVEHSHTHEHGFVSEALELEKLQILKNAERRAAWIGLAANIGLAVAKVVASYLSGSMAIIASAVD 149 (412)
T ss_pred ccchHHHHHHHHhcccccccccccCCCCccccchhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34589999999999999888776653221 1112233456899999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CccchhHH----
Q 015269 150 SLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPK-KMNTVQLE---- 224 (410)
Q Consensus 150 sl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m~~~~~~il~esi~~Li~~~~~~-~~~~~~~~---- 224 (410)
|+.|+++++++|++.+.+++++.++||+|++|+||+|.+.++++|.++|++++.+|+..+..|.... .++.+...
T Consensus 150 Sl~Dl~s~fvll~s~~~~~k~~~~~YP~G~~r~EtvG~i~~S~iMa~agv~ii~sSl~~i~~~~~~~~~~~~~q~~~~~a 229 (412)
T KOG1485|consen 150 SLSDLVSGFVLLFSLRAAKKKPTYEYPRGRGRVETVGLIAVSVIMAMAGVQIIWSSLRLIVGPHAIGHHHNPSQLIFINA 229 (412)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhCCCCCCcccchhHHHHHHHHHHHHHHHHHHhHHhhhcccccccccCchhhcccch
Confidence 9999999999999999999999999999999999999999999999999999999999998832221 12222322
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCC-hhhHHhHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 015269 225 -WLYSIMIGATVVKLALWIYCKSSGN-KIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSET 302 (410)
Q Consensus 225 -~~i~i~~~a~vv~~~l~~~~r~~~s-~~l~a~a~d~~~Dv~~n~~~lv~~~l~~~~~~~~Dpi~ailIa~~ii~~~~~~ 302 (410)
|.++++++...+++.++++|+..++ ..++|.|+|||+|+++|.++++|+.++.+++||+||+||++++.|+++.|+++
T Consensus 230 ~~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~~~~~lDP~gailVS~~ii~t~~~t 309 (412)
T KOG1485|consen 230 LWLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYYYNYWLDPIGAILVSTYIIYTGGRT 309 (412)
T ss_pred hhhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhcccchhhhhhheehhhhhhHH
Confidence 7888999999999999999998876 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHcC-CCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCC
Q 015269 303 VMENAVSLVGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPE 381 (410)
Q Consensus 303 ~~e~~~~L~g~s~~~e~~~~I~~~~~~~-~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~ 381 (410)
..+++.+|+|+++|||.++++++.+.++ +.++.++++++|++|..++||+||++|++++++++|+|++.+|++||.+|+
T Consensus 310 ~~~~i~~Lvg~~a~pe~L~~~~~~~l~~~~~i~~idtv~~y~~g~~~~Vev~ivl~~~~~l~~ah~i~E~lq~~ie~l~e 389 (412)
T KOG1485|consen 310 GLENIKELVGRSAPPEYLEIITYLILQHGKLIKHIDTVRAYTFGSHYFVEVHIVLDEDLSLSVAHDIGETLQKKIELLPE 389 (412)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhhcCccccceeeeeecccceEEEEEeeecCCCCccHHHHHHHHHHHHHHhhcch
Confidence 9999999999999999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeecCCCCCccccc
Q 015269 382 VERAFVHLDYECDHKPEHTVL 402 (410)
Q Consensus 382 v~~v~Vhvd~~~~~~p~h~~~ 402 (410)
|+|+|||+||+++|+|+|...
T Consensus 390 ver~fvh~d~e~~hr~~~~~~ 410 (412)
T KOG1485|consen 390 VERAFVHIDYEFLHRPHHEHL 410 (412)
T ss_pred heeeeeecCccccCCchHhhc
Confidence 999999999999999999754
No 2
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-51 Score=399.60 Aligned_cols=286 Identities=26% Similarity=0.422 Sum_probs=266.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHH
Q 015269 107 LQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVG 186 (410)
Q Consensus 107 ~~~~~~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~ 186 (410)
.++.+..+++.++++++|++++++|+++|+++||.||+||++||+.|++++++.+++.+.++||++++|||||+|+|+++
T Consensus 5 ~~~~~~~~~~~~~sl~~nl~l~~~K~~~g~~~gS~ALlADaihs~~D~~~si~~l~~l~~s~kp~d~~HpyGh~k~E~l~ 84 (304)
T COG0053 5 EERLKLVRRAALISLAVNLALALLKLIAGILTGSVALLADAIHSLSDIVASLIVLIGLRISSKPPDRDHPYGHGKAETLA 84 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH----hCChhhHHhHHHHHhh
Q 015269 187 IIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFD 262 (410)
Q Consensus 187 ~li~sv~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~----~~s~~l~a~a~d~~~D 262 (410)
+++.|++++++|++++++++.+++.+.+.+ ...+++.+++++++++.++++|.++ .+|+++.|+++|+++|
T Consensus 85 sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~-----~~~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD 159 (304)
T COG0053 85 SLIVSILIFAAGFEILLEAIKRLISPQPVE-----PPLLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSD 159 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHH
Confidence 999999999999999999999999977653 3457888999999999999999865 4688999999999999
Q ss_pred HHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCccccceEEE
Q 015269 263 VVTNVVGLVAAVLGDSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRA 341 (410)
Q Consensus 263 v~~n~~~lv~~~l~~~~-~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~ 341 (410)
++++++++++.+ +.++ |||+||++|++|+++|++.++++++|++..|+|+++|++..++|++++.+.|+|.++|++|+
T Consensus 160 ~~ts~~~lvgl~-~~~~g~~~lD~i~a~~I~~~Il~~~~~~~~~s~~~L~d~~~~~~~~~~i~~~i~~~~~V~~v~~lr~ 238 (304)
T COG0053 160 VLTSLAVLVGLL-GSLLGWPWLDPLAALLISLYILKTGFRLFKESVNELMDAALDPEDLEKIRAIILSVPGVKGVHDLRT 238 (304)
T ss_pred HHHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHhcCCcceeeeccee
Confidence 999998888766 5554 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc-CCCceEEEEEEeecCCCCCc
Q 015269 342 YTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLDYECDHKPE 398 (410)
Q Consensus 342 ~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~-l~~v~~v~Vhvd~~~~~~p~ 398 (410)
++.|+.+++++||++|+++|+.|+|+|+++++++|++ .|++.+++||+||......+
T Consensus 239 R~~G~~~~id~~i~v~~~ls~~eah~I~~~ie~~i~~~~~~~~~v~IhveP~~~~~~~ 296 (304)
T COG0053 239 RKSGSRIFIDVHIEVDPDLSLEEAHEIADEVEKRIKKEFPKVADVTIHVEPLGEKEEE 296 (304)
T ss_pred eeeCCeEEEEEEEEECCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcccccc
Confidence 9999999999999999999999999999999999974 66699999999997554443
No 3
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=100.00 E-value=4.6e-50 Score=392.79 Aligned_cols=276 Identities=20% Similarity=0.232 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHH
Q 015269 112 QHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFA 191 (410)
Q Consensus 112 ~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~s 191 (410)
..+++.++++++|++++++|+++|+.+||+||+||++||+.|++++++++++.+.++||++++|||||+|+|++++++.|
T Consensus 8 ~~~~~~~~~~~~n~~l~i~k~~~g~~sgS~allaDa~hsl~D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~ 87 (299)
T PRK09509 8 LVSRAAIAATAMASLLLLIKIFAWWYTGSVSLLAALVDSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQS 87 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH----hCChhhHHhHHHHHhhHHHHH
Q 015269 192 AIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFDVVTNV 267 (410)
Q Consensus 192 v~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~----~~s~~l~a~a~d~~~Dv~~n~ 267 (410)
++|+++++++++||++++++|++.+ ...+++.+++++++++.++++|+++ .+|++++++++|+++|+++++
T Consensus 88 ~~l~~~~~~~~~esi~~l~~~~~~~-----~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~ 162 (299)
T PRK09509 88 MFISGSALFLFLTGIQHLISPTPMN-----DPGVGIIVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNG 162 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCC-----cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887653 2335566788888999988877764 468889999999999999998
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCccccceEEEeeecCe
Q 015269 268 VGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVL 347 (410)
Q Consensus 268 ~~lv~~~l~~~~~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~ 347 (410)
+++++.++..+.++|+||++++++++++++.|+++++++...|+|.++|++..++|++.+.++|+|.++|++|+|+.|++
T Consensus 163 ~vl~~~~~~~~g~~~~D~i~aiii~~~il~~~~~i~~~~~~~Ll~~~~~~~~~~~I~~~i~~~~~v~~v~~l~~~~~G~~ 242 (299)
T PRK09509 163 AILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPT 242 (299)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhCCCCcCceeeeeEeeCCe
Confidence 66665444433488999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHhh-cCCCceEEEEEEeecC
Q 015269 348 YFVEVDIELPEELPLKEAHAIGESLQNKIE-KLPEVERAFVHLDYEC 393 (410)
Q Consensus 348 ~~Vev~I~v~~~~~l~eah~I~~~lq~~L~-~l~~v~~v~Vhvd~~~ 393 (410)
+++++||++|++++++|+|++++++|++|+ ++|++ +++||+||.+
T Consensus 243 ~~v~v~i~v~~~~~~~e~h~i~~~ie~~l~~~~~~~-~v~ihveP~~ 288 (299)
T PRK09509 243 RFIQLHLEMEDNLPLVQAHMIADQVEQALLRRFPGS-DVIIHQDPCS 288 (299)
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCC-EEEEEeCCCC
Confidence 999999999999999999999999999997 56665 5999999954
No 4
>PRK03557 zinc transporter ZitB; Provisional
Probab=100.00 E-value=4.9e-48 Score=380.22 Aligned_cols=278 Identities=17% Similarity=0.200 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHH
Q 015269 113 HERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAA 192 (410)
Q Consensus 113 ~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv 192 (410)
.+|.+++++++|++++++|+++|+.+||+||+||++||+.|++++++++++.+.++||++++|||||+|+|++++++.|+
T Consensus 17 ~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~ 96 (312)
T PRK03557 17 NARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAI 96 (312)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH---hCChhhHHhHHHHHhhHHHHHHH
Q 015269 193 IMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS---SGNKIVRAYAKDHYFDVVTNVVG 269 (410)
Q Consensus 193 ~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~---~~s~~l~a~a~d~~~Dv~~n~~~ 269 (410)
+|+++++++++||+.++++|.+.+ ..++++++++++++|.+++++.++ .+|..++|.++|+++|+++++++
T Consensus 97 ~l~~~~~~i~~eai~~l~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~v 170 (312)
T PRK03557 97 ALVVITILIVWEAIERFRTPRPVA------GGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGA 170 (312)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccc------chHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875432 234566777888889877766654 24678999999999999999988
Q ss_pred HHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHH-HcCCCccccceEEEeeecCe
Q 015269 270 LVAAVLGDSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLV-IRHPEVKRIDTVRAYTFGVL 347 (410)
Q Consensus 270 lv~~~l~~~~-~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~-~~~~~V~~v~~vr~~~~G~~ 347 (410)
+++++++.++ |+|+||++++++++++++.+++++++++..|++.++|++..++|++.+ .++|+|+++|++|+|+.|++
T Consensus 171 lv~~~~~~~~g~~~~Dpi~~ilis~~i~~~~~~l~~~~~~~Lld~~p~~~~~~~i~~~i~~~~~gV~~vh~l~~~~~G~~ 250 (312)
T PRK03557 171 IIAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKESVNELLEGAPVSLDIAELKRRLCREIPEVRNVHHVHVWMVGEK 250 (312)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHHhcCCCceeEEEEEEEEeCCe
Confidence 8888776654 779999999999999999999999999999999888777789998876 56799999999999999999
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeecCCCCCcc
Q 015269 348 YFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEH 399 (410)
Q Consensus 348 ~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~~~~p~h 399 (410)
+++++||++++++ ++|+++++++++|++.+++++++||+||+.++.+++
T Consensus 251 ~~v~~hv~v~~~~---~~~~i~~~i~~~l~~~~~i~~vtIh~e~~~~~~~~~ 299 (312)
T PRK03557 251 PVMTLHVQVIPPH---DHDALLDRIQDYLMHHYQIEHATIQMEYQPCHGPDC 299 (312)
T ss_pred EEEEEEEEECCCC---CHHHHHHHHHHHHHHhCCCCEEEEEeccCcCCCcch
Confidence 9999999999885 679999999999987678999999999986566543
No 5
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=100.00 E-value=3.3e-46 Score=359.72 Aligned_cols=261 Identities=23% Similarity=0.352 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015269 127 LLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAV 206 (410)
Q Consensus 127 l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m~~~~~~il~esi 206 (410)
++++|+++|+.+||.||+||++||+.|++++++++++.+.++|+++++|||||+|+|++++++.|++|++.+++++++|+
T Consensus 2 l~~~k~~~g~~~~S~allada~~s~~D~~~~~~~l~~~~~~~~~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si 81 (268)
T TIGR01297 2 LMLIKIVGGLLSGSLALLADAIHSLSDVAASAIALLALRISRRPADERHPFGHGRAEILAALLNGLFLVVVALFILYEAI 81 (268)
T ss_pred EEEeehHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH----hCChhhHHhHHHHHhhHHHHHHHHHHHHHHhhhhhh
Q 015269 207 EKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWW 282 (410)
Q Consensus 207 ~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~----~~s~~l~a~a~d~~~Dv~~n~~~lv~~~l~~~~~~~ 282 (410)
.+++++++.+ ...+++.++++++++|+++++++++ .+|+.+++.+.|+++|++++++++++..+..++++|
T Consensus 82 ~~l~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~~~~~~ 156 (268)
T TIGR01297 82 ERLINPEPEI-----DGGTMLIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIYFGWHW 156 (268)
T ss_pred HHHhCCCCcc-----cchhHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999876442 2345677888999999999988876 347889999999999999999888877776666889
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCC
Q 015269 283 IDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELP 361 (410)
Q Consensus 283 ~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~ 361 (410)
+||++++++++++++.++++++++...|+|.++|++..+++++.+.++|+|.++|++|+|+.|+ ++++++||++|+++|
T Consensus 157 ~D~l~~i~i~~~i~~~~~~l~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~G~~~~~v~~~v~v~~~~~ 236 (268)
T TIGR01297 157 ADPIAALLISLLILYTAFRLLKESINVLLDAAPDEEDLEEIKKAILSIPGVKGVHDLHIWRIGPGKLFLDVHVVVDPDLD 236 (268)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhcCCCcccceEeEEEEcCCCCEEEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-cCCCceEEEEEEeec
Q 015269 362 LKEAHAIGESLQNKIE-KLPEVERAFVHLDYE 392 (410)
Q Consensus 362 l~eah~I~~~lq~~L~-~l~~v~~v~Vhvd~~ 392 (410)
++|+|++++++|++++ ++|++++++||+||+
T Consensus 237 ~~~ah~i~~~i~~~i~~~~~~v~~v~ih~ep~ 268 (268)
T TIGR01297 237 LKQAHDIALEIEREILKRHPGIEHVTIQVEPC 268 (268)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 9999999999999996 679999999999983
No 6
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-40 Score=317.91 Aligned_cols=274 Identities=17% Similarity=0.226 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHH
Q 015269 110 QVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIII 189 (410)
Q Consensus 110 ~~~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li 189 (410)
..+.+|.+++++++|..++++|+++|+.|||+||+||++|++.|+++.++.+++.+.++|+.+.+|+|||.|+|.+++++
T Consensus 17 ~~~~~r~l~~~~~L~~~f~~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~ 96 (296)
T COG1230 17 NPRNERRLLIALLLNLAFMLIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFL 96 (296)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHH
Confidence 44567999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh--CChhhHHhHHHHHhhHHHHH
Q 015269 190 FAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS--GNKIVRAYAKDHYFDVVTNV 267 (410)
Q Consensus 190 ~sv~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~~--~s~~l~a~a~d~~~Dv~~n~ 267 (410)
.+++++.+++++++|+++|+++|.+.+ ...+++++++++++|+++.+..++- ++..+++...|..+|.+.|+
T Consensus 97 nav~Li~~s~~I~~EAi~R~~~P~~i~------~~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~LHvl~D~Lgsv 170 (296)
T COG1230 97 NALLLIVVSLLILWEAIQRLLAPPPIH------YSGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYLHVLGDALGSV 170 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCC------ccchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764 2467889999999999877766654 35789999999999999999
Q ss_pred HHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCccccceEEEeeecC
Q 015269 268 VGLVAAVLGDSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV 346 (410)
Q Consensus 268 ~~lv~~~l~~~~-~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~ 346 (410)
++++++++..++ |.|+||+.+++++++++..++++++++...|++..|+....+++++.+.+.|+|.++|++++|+.++
T Consensus 171 ~vIia~i~i~~~~w~~~Dpi~si~i~~lil~~a~~l~k~s~~iLle~~P~~id~~~~~~~l~~~~~v~~vhdlHvWsi~~ 250 (296)
T COG1230 171 GVIIAAIVIRFTGWSWLDPILSIVIALLILSSAWPLLKESLNILLEGVPEGIDIDKVREALLRIPGVASVHDLHVWSITG 250 (296)
T ss_pred HHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHhcCCCccceeecccCCCCC
Confidence 999999998887 7799999999999999999999999999999998777777999999999889999999999999966
Q ss_pred -eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeec
Q 015269 347 -LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 392 (410)
Q Consensus 347 -~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~ 392 (410)
.....+|+++++..+- +.+.+++++++.+.+++++++||+|+.
T Consensus 251 ~~~~~t~Hv~v~~~~~~---~~~~~~~~~~l~~~~~I~hvTiQ~e~~ 294 (296)
T COG1230 251 GEHALTLHVVVDEVADA---DAALDQIVRRLLEKYGIEHVTIQLETE 294 (296)
T ss_pred CceeEEEEEEecCccch---HHHHHHHHHHHhhhcCcceEEEEecCC
Confidence 7779999999954332 228899999998778999999999975
No 7
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=100.00 E-value=9.2e-43 Score=338.16 Aligned_cols=273 Identities=24% Similarity=0.443 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHHHH
Q 015269 117 MKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMAT 196 (410)
Q Consensus 117 l~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m~~ 196 (410)
+++++++|+++++.|+++|+.+||.++++|++|++.|+++.++.+++.+.+++|++.+||||++|+|++++++.++++++
T Consensus 1 L~i~~~~~~~~~~~~~~~~~~t~S~al~~d~~~sl~d~~~~~~~l~~~~~~~~~~~~~~pfG~~r~e~l~~~~~~~~l~~ 80 (284)
T PF01545_consen 1 LIISLILNLILAVVKIIAGIITGSLALLADGLHSLADAISLLISLFALRIASKPPDKRYPFGYGRLEPLAALIVSILLIF 80 (284)
T ss_dssp -HHHHHHHCCTHHCTTCSS-SSSSS---SCCCHHHHHHHHHHHHHHHHHHHTSS-SSSSSSSSTTHHHHHHHHHHHHHHH
T ss_pred CeeeHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhhhHhhhhhhhhHhh
Confidence 57899999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH----hC--ChhhHHhHHHHHhhHHHHHHHH
Q 015269 197 LGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SG--NKIVRAYAKDHYFDVVTNVVGL 270 (410)
Q Consensus 197 ~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~----~~--s~~l~a~a~d~~~Dv~~n~~~l 270 (410)
+++.++++++++++++.+.+ ...+++.++++++++++.++++.++ .+ ++.+++.+.+++.|++.+++++
T Consensus 81 ~~~~~~~~si~~~~~~~~~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~ 155 (284)
T PF01545_consen 81 LGLFLIVESIQRLISPHEPS-----PPGIVLIVALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVL 155 (284)
T ss_dssp HHHHHHHHHTTTSSSSSSSS-----TTTS-THHHHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-
T ss_pred hHHHHHHHHhhcccccccch-----hhhhhhhhhhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHH
Confidence 99999999999999985543 2223444588889999988887766 44 8889999999999999999877
Q ss_pred HHHHHHhhh-h-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCccccceEEEeeecC-e
Q 015269 271 VAAVLGDSF-Y-WWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-L 347 (410)
Q Consensus 271 v~~~l~~~~-~-~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~ 347 (410)
++.++...+ + ||+||++++++++++++.+++.++++...|+|.+++++..+++++.+++.|++.+++++|+|+.|+ +
T Consensus 156 i~~~~~~~~~~~~~~D~v~~l~i~~~i~~~~~~~~~~~~~~Ll~~~~~~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~ 235 (284)
T PF01545_consen 156 ISLLLAYLGPWFWYADPVASLLIALFILYSGYPLIKESIRILLDASPDPELVEKIRRIIESVPGVIEVHDLRVWQVGRNK 235 (284)
T ss_dssp SSSTSSSTT-STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHTSS-SEEEEEEEEEETT-E
T ss_pred HHHHHHHHHhcccccchhhhhHHHHHHhhhhhhchhhhhcccccccccccchhHHHHhhccCCceEeccceEEEEecCCc
Confidence 777776665 3 359999999999999999999999999999999989999999999999999999999999999999 9
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHhh-cCCCceEEEEEEeecCC
Q 015269 348 YFVEVDIELPEELPLKEAHAIGESLQNKIE-KLPEVERAFVHLDYECD 394 (410)
Q Consensus 348 ~~Vev~I~v~~~~~l~eah~I~~~lq~~L~-~l~~v~~v~Vhvd~~~~ 394 (410)
+++++++.++++++++|+|++++++++.++ +.+++.+++||++|+..
T Consensus 236 ~~v~i~v~v~~~~~v~~~~~i~~~i~~~l~~~~~~i~~v~I~~~p~~~ 283 (284)
T PF01545_consen 236 YVVEIHVQVDPDMSVEEAHEIRERIEKRLREKFPGIYDVTIHIEPDEE 283 (284)
T ss_dssp EEEEEEEEETTTSBHHHHHHHHHHHHHHHHHHSTTCEEEEEEEEECGG
T ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCcEEEEEEEEecCC
Confidence 999999999999999999999999999996 68999999999999754
No 8
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.1e-26 Score=221.87 Aligned_cols=269 Identities=15% Similarity=0.194 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHH
Q 015269 114 ERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAI 193 (410)
Q Consensus 114 ~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~ 193 (410)
+|-+...+++|+.++.++++.+..|||+++++|+.|+++|+.+..+.+++...+++|.+.+||||+.|+|.+++++.+++
T Consensus 34 sr~if~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vf 113 (354)
T KOG1484|consen 34 SRSIFLFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVF 113 (354)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH-h----CC-------------------
Q 015269 194 MATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS-S----GN------------------- 249 (410)
Q Consensus 194 m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~-~----~s------------------- 249 (410)
+.+.++.+..|+++|+++|+... ..-...+...+.++|++-.+..+. . ++
T Consensus 114 lvl~a~fi~~Es~eRl~~ppei~------t~rllvVS~~gllvnLvGi~aF~h~~~h~hg~~~~s~~~~h~~~~~~~~~~ 187 (354)
T KOG1484|consen 114 LVLIAFFIFSESVERLFDPPEIH------TNRLLVVSVLGLLVNLVGILAFSHGHAHSHGSHHHSSHSGHLALLFHSLLG 187 (354)
T ss_pred HHHHHHHHhHHHHHHhcCchhcC------CceeEEeeHHHHHHHHHHHHHhccccccccCCCCccccccchhcccccccc
Confidence 99999999999999999985432 112344666777777753332221 1 10
Q ss_pred -----------------hhhHHhHHHHHhhHHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015269 250 -----------------KIVRAYAKDHYFDVVTNVVGLVAAVLGDSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLV 311 (410)
Q Consensus 250 -----------------~~l~a~a~d~~~Dv~~n~~~lv~~~l~~~~-~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~ 311 (410)
..+.....+-..|.+.+++++++.++..++ |.|+||+.+++|++.|+.+.+++++++...|+
T Consensus 188 ~~~~~~~~~~~i~g~~~~~m~gifLHVLaDtlgSvGviist~Li~~~gw~~aDpicsllIailIf~sv~PL~k~s~~iLL 267 (354)
T KOG1484|consen 188 VWDLHHHAHGHIHGHSHENMPGIFLHVLADTLGSVGVIISTLLIKLFGWMIADPICSLLIAILIFLSVLPLLKYSGKILL 267 (354)
T ss_pred ccccccccccccCCcccccccchhHHHHHHHhcchHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 113344567788999999999999999876 77999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHc---CCCccccceEEEeeecCe-EEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEE
Q 015269 312 GQSAPPEILQKLTYLVIR---HPEVKRIDTVRAYTFGVL-YFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 387 (410)
Q Consensus 312 g~s~~~e~~~~I~~~~~~---~~~V~~v~~vr~~~~G~~-~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~V 387 (410)
.+ .||+..+.+.+.+.+ .++|.++.+-|.|+.+.. +...+|+.+..+. +.+.+...+.++++.. +|.+.+|
T Consensus 268 q~-tPp~~~~~l~~cl~~Is~~~gV~~v~~~hFWt~~~g~~vGtlhl~V~~da---de~~vl~~V~~~~~~~-gV~~ltv 342 (354)
T KOG1484|consen 268 QR-TPPHLENSLKQCLRQISTLDGVTSVQNPHFWTLESGSVVGTLHLQVSSDA---DEQSVLAHVTRKLEDA-GVKDLTV 342 (354)
T ss_pred hc-CChhhhhHHHHHHHHhhccccceeeccCceeeccCCceEEEEEEEEecCc---chhHHHHHHHHHHHhc-ceeEEEE
Confidence 85 577777776665555 499999999999999985 8899999999884 5677888888888875 6999999
Q ss_pred EEeecC
Q 015269 388 HLDYEC 393 (410)
Q Consensus 388 hvd~~~ 393 (410)
++|.+.
T Consensus 343 Qv~~~~ 348 (354)
T KOG1484|consen 343 QVEKEN 348 (354)
T ss_pred EEeccc
Confidence 988753
No 9
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.2e-26 Score=224.75 Aligned_cols=280 Identities=15% Similarity=0.157 Sum_probs=247.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHH
Q 015269 112 QHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFA 191 (410)
Q Consensus 112 ~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~s 191 (410)
..+|.++++.++.+++.+.+++.|+.+||+|+++|+.|-+.|+.+-.+.+++.+.+++|.+.+..||+.|.|.+++++.-
T Consensus 70 ~~~r~L~~~~~l~l~fm~~E~vGg~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv 149 (379)
T KOG1482|consen 70 AAERKLSIAAALCLVFMIGEVVGGYKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSV 149 (379)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhCCeeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh------C---------------Ch
Q 015269 192 AIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS------G---------------NK 250 (410)
Q Consensus 192 v~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~~------~---------------s~ 250 (410)
..+..+...++++++.|+++++.+- ....|++++.+++++|..+....... + |.
T Consensus 150 ~~IW~~tgvLV~~Ai~Rl~s~~~ev-----~g~~m~i~a~~gv~vNiim~~vL~~~~h~h~H~~~~s~g~~h~~~~~~n~ 224 (379)
T KOG1482|consen 150 LLIWVVTGVLVYEAIQRLLSGDYEV-----NGGIMLITAAVGVAVNIIMGFVLHQSGHGHSHGGSHSHGHSHDHGEELNL 224 (379)
T ss_pred HHHHHhhhhhHHHHHhhhhcCceee-----cceEEEEEeehhhhhhhhhhhhhcccCCCCCCCCCCCcCcccccccccch
Confidence 9999999999999999999998542 22356667788888888664443211 1 16
Q ss_pred hhHHhHHHHHhhHHHHHHHHHHHHHHhhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 015269 251 IVRAYAKDHYFDVVTNVVGLVAAVLGDSF--YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVI 328 (410)
Q Consensus 251 ~l~a~a~d~~~Dv~~n~~~lv~~~l~~~~--~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~ 328 (410)
+++|...|.+.|.+.++++++++.+.++. |.++||+..++.++.++.+-..++|+.+..|+...+..-....+++.+.
T Consensus 225 nvraAyiHVlGDliQSvGV~iaa~Ii~f~P~~~i~DpICT~~FSiivl~TT~~i~rd~~~iLmE~~P~~~d~~~~~~~l~ 304 (379)
T KOG1482|consen 225 NVRAAFVHVLGDLIQSVGVLIAALIIYFKPEYKIADPICTFVFSIIVLGTTITILRDILGILMEGTPRNLDFDKVKKGLL 304 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeEEecccceecCchhhhhHHHHHHHhHHHHHHHHHHHHhcCCCccCcHHHHHHHHh
Confidence 79999999999999999999988777654 7799999999999999999999999999999998776667899999999
Q ss_pred cCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeecCCCCCcc
Q 015269 329 RHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEH 399 (410)
Q Consensus 329 ~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~~~~p~h 399 (410)
..++|+.||++++|..+- +..+.+||..+++ .++..|-+++...|++.+++.+++|++||..+..+.+
T Consensus 305 ~iegV~~VHdLhIWsiTv~k~~ls~Hv~i~~~---ad~~~vL~~~~~~i~~~~~~~~vTiQie~~~~~~~~c 373 (379)
T KOG1482|consen 305 SIEGVKAVHDLHIWSITVGKVALSVHLAIDSE---ADAEEVLDEARSLIKRRYGISHVTIQIEPYTEEMDDC 373 (379)
T ss_pred hhcceeEEEEEEEEEEecCceEEEEEEeecCC---CCHHHHHHHHHHHHHhhcceEEEEEEecCCccchhhH
Confidence 999999999999999986 6779999999977 4778899999999998899999999999987776654
No 10
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=99.95 E-value=7.4e-26 Score=208.48 Aligned_cols=274 Identities=16% Similarity=0.141 Sum_probs=232.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhc-CCCCCCCCccchhHHHHHHHHH
Q 015269 112 QHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMK-NINIYKYPIGKLRVQPVGIIIF 190 (410)
Q Consensus 112 ~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~-~~~~~~~P~G~~R~E~l~~li~ 190 (410)
.+++.+.+|++..++++...+++|..+||++++-|++.|+.|+..+.+.++..+... +|.+.|||||++-+||+...+.
T Consensus 17 ~eq~~L~~Si~~tvi~A~~GIi~GL~~gS~~IiFDGvYSl~da~mtllsL~vsrli~~~p~~~RF~~GfwhlEplvL~in 96 (314)
T COG3965 17 NEQLYLRISIAGTVIFAAFGIIWGLLSGSMSIIFDGVYSLIDAGMTLLSLLVSRLIAKDPRDARFPYGFWHLEPLVLAIN 96 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcceEEEeccHHHHHHHHHHHHHHHHHHHhccCCCccccCcchhhhhhhHhhhc
Confidence 446889999999999999999999999999999999999999999999888876654 6777799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH----hCChhhHHhHHHHHhhHHHH
Q 015269 191 AAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFDVVTN 266 (410)
Q Consensus 191 sv~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~----~~s~~l~a~a~d~~~Dv~~n 266 (410)
+.+++.++++-++.++..++++..+. .+.+++.+.+++..+++.+|+..++ .+|+.+.++...|..|...+
T Consensus 97 g~ll~ll~lyAlinAl~~l~dGGR~v-----~~~~ai~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS 171 (314)
T COG3965 97 GTLLALLCLYALINALGSLLDGGREV-----EPGHAIAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLS 171 (314)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCccc-----cccHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999873 4567788888888888888887766 34788999999999999999
Q ss_pred HHHHHHHHHHhh--------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCcccc--
Q 015269 267 VVGLVAAVLGDS--------FYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRI-- 336 (410)
Q Consensus 267 ~~~lv~~~l~~~--------~~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~V~~v-- 336 (410)
.+.+++-++++. +.+|+||+.-.+++++++....++++.+..+.+.-+ |.|+.|+|+..+.+...-.++
T Consensus 172 ~al~VaF~~a~~l~~T~~a~l~~Y~DPmvlaL~~~v~IplPlg~vk~al~eiLlmt-P~el~q~ies~~~~~v~k~~f~~ 250 (314)
T COG3965 172 AALFVAFAAAWLLAGTKFAHLVVYADPMVLALVCLVFIPLPLGTVKSALREILLMT-PNELQQSIESHAHEIVEKYGFPS 250 (314)
T ss_pred HHHHHHHHHHHHhccCchhhhhcccCHHHHHHHHHheeeccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHhcCch
Confidence 876666444432 146999999999999999999999999999988754 568999998887765221222
Q ss_pred ceEEEeeecCeEEEEEEEEeCCC---CCHHHHHHHHHHHHHHhhcCCCceEEEEEEee
Q 015269 337 DTVRAYTFGVLYFVEVDIELPEE---LPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 391 (410)
Q Consensus 337 ~~vr~~~~G~~~~Vev~I~v~~~---~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~ 391 (410)
+++++-+.|+.+++|+|..+|++ ..+++-++|.+++++.|..+|.-...+|.+..
T Consensus 251 ~~~yvArVGr~l~IEi~fiip~~~~ar~Ved~d~Irdei~~slg~~g~~rwltvsfT~ 308 (314)
T COG3965 251 YHVYVARVGRGLFIEIHFIIPRESDARNVEDWDDIRDEIGQSLGSLGYERWLTVSFTR 308 (314)
T ss_pred HHHHHHHhccceEEEEEEEeCCccCCccchhHHHHHHHHHHHhhcCCcCceEEEEEec
Confidence 23446778999999999999876 46788999999999999988877777777653
No 11
>KOG1483 consensus Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=224.83 Aligned_cols=270 Identities=16% Similarity=0.237 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHH
Q 015269 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIM 194 (410)
Q Consensus 115 ~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m 194 (410)
.-++.-+++.++++++|++.++.++|+|++||++|++.|+++.++++++.+.+++....+||||+.|.|.+|+++.++|+
T Consensus 9 ~rli~~l~ltiiFfvLEli~gyv~~sLaLiadSfHML~dIiaLivaf~~ik~a~~~~~~k~tyGw~rAEilGalvN~ifl 88 (404)
T KOG1483|consen 9 LRLISVLVLTIIFFVLELITGYVTNSLALIADSFHMLNDIIALIVAFWAIKEAKRIPLQKYTYGWARAEILGALVNAIFL 88 (404)
T ss_pred cceeehHHHHHHHHHhhhhhhcccchHHHHhhHHHHHHHHHHHHHHHHHHHhhhcCcccccCcchhHHHHHhhhhHHHHH
Confidence 34556678899999999999999999999999999999999999999999988886669999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHH-H--H---H-----------------H-----
Q 015269 195 ATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWI-Y--C---K-----------------S----- 246 (410)
Q Consensus 195 ~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~-~--~---r-----------------~----- 246 (410)
..+.+.++.|+++|++++..... +...+.+.+++++.|.+-+. + + . .
T Consensus 89 ~alc~~I~~EA~~R~I~p~~i~~-----P~~vL~vgi~gLi~Nvlg~~lfhdhg~~h~~~~H~h~hg~~~~~~~~~~~~~ 163 (404)
T KOG1483|consen 89 TALCVSILIEAIERIIEPHHIEN-----PILVLYVGIIGLISNVLGLFLFHDHGHDHGHGVHGHSHGGMKGFIGLNLTHL 163 (404)
T ss_pred HHHHHHHHHHHHHhhcCCccccC-----ceeeehhhHHHHHHHHHHhheeeccCcccCCcCCCCCCCccccchhhhccCC
Confidence 99999999999999999887642 23344455556666543221 1 1 0 0
Q ss_pred -----------hC-------------------C------h------------------------hhHHhHHHHHhhHHHH
Q 015269 247 -----------SG-------------------N------K------------------------IVRAYAKDHYFDVVTN 266 (410)
Q Consensus 247 -----------~~-------------------s------~------------------------~l~a~a~d~~~Dv~~n 266 (410)
.+ | + +++..+.+-..|.+.+
T Consensus 164 ~~~~~G~~t~~~~~d~~~~~~p~~~l~~~~~~N~~~~s~pv~~~~S~~r~~~~~~~~e~~~~~lnmhGv~LhvL~Dalg~ 243 (404)
T KOG1483|consen 164 HSHAIGCNTLAKQLDTPLGPGPNAHLSGVMSQNLDGSSTPVQNHGSLSRDDAREKTEEKLDRNLNMHGVFLHVLGDALGS 243 (404)
T ss_pred chhccCCcchhhccccCCCCcchhhhccccccCCCCCCCccccCCcccccchhhhhhhhhhccccccceeeeeecccccc
Confidence 00 0 0 0011122335577778
Q ss_pred HHHHHHHHHHhhh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCccccceEEEe
Q 015269 267 VVGLVAAVLGDSF----YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAY 342 (410)
Q Consensus 267 ~~~lv~~~l~~~~----~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~ 342 (410)
++++++++..++. ..|+||+.+++++++++..++.+.+|+...|+...+..-.++.+++.+.++|||.+||++++|
T Consensus 244 I~Vi~~A~~v~~t~~~~~~y~DP~lsi~~~~ii~~sa~pl~k~s~liLLq~~P~~i~ld~v~~~l~~~~gv~~vh~lhvW 323 (404)
T KOG1483|consen 244 IIVIVSALFVYKTEYSWAYYLDPILSIVLTVIILFSAYPLLKESALILLQTTPGSIDLDIVEKDLLTVPGVISVHDLHVW 323 (404)
T ss_pred eEEEEEEEEEEecceehhhhcCchHHHHHHHHHHHhhhHHHHHHHHHHHHhCCCcccHHHHHHHHhcCcceeeeeeeeee
Confidence 8777777666653 348999999999999999999999999999999877777799999999999999999999999
Q ss_pred ee-cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeecC
Q 015269 343 TF-GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 393 (410)
Q Consensus 343 ~~-G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~ 393 (410)
+. |..+...+||.++.. .+--++++.+++.+..+ ++..+||+.|+..
T Consensus 324 qL~~~r~IAt~Hi~~~~p---~~~~~~a~~ir~~fh~~-GIhs~TiqPeF~~ 371 (404)
T KOG1483|consen 324 QLAGSRIIATIHIQIQNP---KEYMKIAEKIRSYFHDQ-GIHSTTIQPEFAP 371 (404)
T ss_pred eeccceEEEEEEEEecCc---HHHHHHHHHHHHHHHhc-CCcceeeccchhh
Confidence 98 668999999999654 34458999999999874 9999999999865
No 12
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=99.75 E-value=5.5e-18 Score=163.22 Aligned_cols=207 Identities=20% Similarity=0.156 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHH
Q 015269 111 VQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIF 190 (410)
Q Consensus 111 ~~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~ 190 (410)
+...|++-+++++|.+-+.+|+.+++.|||.+++|+++||++|..+.+++.++.+.+.+.++..|||||..+.++..+|.
T Consensus 203 k~s~rvVatAi~iN~l~~~~Kfg~w~~tgShsmfAEaIHS~aD~~NQ~lLa~Gis~S~q~PD~lhPYGYsnmRyVsSLIS 282 (503)
T KOG2802|consen 203 KGSGRVVATAICINGLNCFFKFGAWIYTGSHSMFAEAIHSLADTCNQLLLALGISKSVQTPDPLHPYGYSNMRYVSSLIS 282 (503)
T ss_pred cCCCceehhHHHHHHHHHHHHhhHhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCcccchhHHHHHHh
Confidence 44568899999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHH-------------------HHHHHHhCCh
Q 015269 191 AAIMATLGFQ-VLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLAL-------------------WIYCKSSGNK 250 (410)
Q Consensus 191 sv~m~~~~~~-il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l-------------------~~~~r~~~s~ 250 (410)
|+.++..|.. -++.++..|++|+|.+ ...|++.+...+++....- |-|.+..++|
T Consensus 283 gvGIfc~G~GlSiyhGv~gLlhpePi~-----~l~~ay~il~gSl~~eGasllvAi~evkr~Ak~~gmSi~dYV~~~~DP 357 (503)
T KOG2802|consen 283 GVGIFCMGCGLSIYHGVMGLLHPEPIE-----SLLWAYCILAGSLVSEGASLLVAINEVKRNAKAKGMSIYDYVMESRDP 357 (503)
T ss_pred ccceeeecccchhhhccccccCCCCCc-----chHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHcCCCHHHHHhhcCCC
Confidence 9977755544 3789999999999985 4567776665555544321 1122222233
Q ss_pred hhHHhHHHHHhhHHHHHHHHHH-H--HHHhhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q 015269 251 IVRAYAKDHYFDVVTNVVGLVA-A--VLGDSF-YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYL 326 (410)
Q Consensus 251 ~l~a~a~d~~~Dv~~n~~~lv~-~--~l~~~~-~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~ 326 (410)
...+.. ..|...-.+++++ + .+.+++ .|..|++|+|+|+.++...
T Consensus 358 s~nvVl---~EDtAAVtGv~IAaa~m~lss~tgnPIyD~~GSivvGaLLGmV---------------------------- 406 (503)
T KOG2802|consen 358 STNVVL---LEDTAAVTGVIIAAACMGLSSITGNPIYDSLGSIVVGALLGMV---------------------------- 406 (503)
T ss_pred cceEEE---ecchHHHHHHHHHHHHHHHHHhcCCCCccccchHHHHHHHHHH----------------------------
Confidence 222211 1233332222222 2 222333 8899999999988765322
Q ss_pred HHcCCCccccceEEEeeecC-eEEEEEEEEeCCC
Q 015269 327 VIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEE 359 (410)
Q Consensus 327 ~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~ 359 (410)
+.+++|++..-.|+ +.....+|.++..
T Consensus 407 ------e~diyDvK~~diG~g~vRfKAE~DFdGr 434 (503)
T KOG2802|consen 407 ------ENDIYDVKATDIGLGKVRFKAEVDFDGR 434 (503)
T ss_pred ------HHhhhhccceeeccceeEEEEEeccCch
Confidence 23378888888887 4445666666654
No 13
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=98.23 E-value=1.2e-05 Score=79.04 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHH
Q 015269 111 VQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIF 190 (410)
Q Consensus 111 ~~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~ 190 (410)
...-.+..+++++|..+...+...+..+||.+|.||+.|...|+++++.++++..... +|+..++++++++.
T Consensus 117 ~~~~~v~l~s~~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ts~~~lvgl~~~~--------~g~~~lD~i~a~~I 188 (304)
T COG0053 117 LLALGVALISIVIKEALYRYLRRVGKKTNSQALIADALHHRSDVLTSLAVLVGLLGSL--------LGWPWLDPLAALLI 188 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------hCcHHHHHHHHHHH
Confidence 3445778889999999999999999999999999999999999999999998866433 57889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC
Q 015269 191 AAIMATLGFQVLIEAVEKLVKDEPPK 216 (410)
Q Consensus 191 sv~m~~~~~~il~esi~~Li~~~~~~ 216 (410)
+++++..++.++.+++..|++...++
T Consensus 189 ~~~Il~~~~~~~~~s~~~L~d~~~~~ 214 (304)
T COG0053 189 SLYILKTGFRLFKESVNELMDAALDP 214 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCH
Confidence 99999999999999999999966553
No 14
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=98.10 E-value=2.5e-05 Score=75.16 Aligned_cols=94 Identities=17% Similarity=0.255 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHH
Q 015269 114 ERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAI 193 (410)
Q Consensus 114 ~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~ 193 (410)
-.+..+++++|.+++..+...+...+|.++.|++.|++.|+++++..+.+...+. ||+..+|++++++.+++
T Consensus 97 ~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vli~~~~~~--------~~~~~~D~l~~i~i~~~ 168 (268)
T TIGR01297 97 LIVAIVGLIVNLILALYLHRVGHRLGSLALRAAALHVLSDALSSVGVLIGALLIY--------FGWHWADPIAALLISLL 168 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHHHHH
Confidence 3466778899999999999999999999999999999999999998888766553 46789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC
Q 015269 194 MATLGFQVLIEAVEKLVKDEPP 215 (410)
Q Consensus 194 m~~~~~~il~esi~~Li~~~~~ 215 (410)
++..++.++++++..|++..++
T Consensus 169 i~~~~~~l~~~~~~~Ll~~~~~ 190 (268)
T TIGR01297 169 ILYTAFRLLKESINVLLDAAPD 190 (268)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999988764
No 15
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=98.05 E-value=5.2e-05 Score=74.50 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHH
Q 015269 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIM 194 (410)
Q Consensus 115 ~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m 194 (410)
....+++++|.++...+...+..++|.++.||+.|+..|+++++.++.+...+. +|+..++++++++.++++
T Consensus 119 ~~~~~~~v~~~~~~~~~~~~~~~~~s~~l~a~~~~~~~D~~~s~~vl~~~~~~~--------~g~~~~D~i~aiii~~~i 190 (299)
T PRK09509 119 IVTLVALICTLILVTFQRWVVRKTQSQAVRADMLHYQSDVMMNGAILLALGLSW--------YGWHRADALFALGIGIYI 190 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hChHHHHHHHHHHHHHHH
Confidence 456678888999888888888899999999999999999999988877765542 477789999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCC
Q 015269 195 ATLGFQVLIEAVEKLVKDEPP 215 (410)
Q Consensus 195 ~~~~~~il~esi~~Li~~~~~ 215 (410)
+..++.++.+++..|++..++
T Consensus 191 l~~~~~i~~~~~~~Ll~~~~~ 211 (299)
T PRK09509 191 LYSALRMGYEAVQSLLDRALP 211 (299)
T ss_pred HHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999987655
No 16
>PRK03557 zinc transporter ZitB; Provisional
Probab=97.31 E-value=0.0018 Score=64.02 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHHHHH
Q 015269 118 KISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATL 197 (410)
Q Consensus 118 ~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m~~~ 197 (410)
.+++++|++++.... -+...+|.++.|++.|...|+++++.++++...... .|+.-++|+++++++++++..
T Consensus 129 ~~~~~~~~~~~~~~~-~~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~~~~~~-------~g~~~~Dpi~~ilis~~i~~~ 200 (312)
T PRK03557 129 VAGLLANILSFWLLH-HGSEEKNLNVRAAALHVLGDLLGSVGAIIAALIIIW-------TGWTPADPILSILVSVLVLRS 200 (312)
T ss_pred HHHHHHHHHHHHHHh-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCcchhHHHHHHHHHHHHHH
Confidence 456667765544332 244468889999999999999999987776544321 234459999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 015269 198 GFQVLIEAVEKLVKDEPP 215 (410)
Q Consensus 198 ~~~il~esi~~Li~~~~~ 215 (410)
++.++++++..|++..++
T Consensus 201 ~~~l~~~~~~~Lld~~p~ 218 (312)
T PRK03557 201 AWRLLKESVNELLEGAPV 218 (312)
T ss_pred HHHHHHHHHHHHHccCCC
Confidence 999999999999987665
No 17
>KOG1485 consensus Mitochondrial Fe2+ transporter MMT1 and related transporters (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.016 Score=58.46 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHH
Q 015269 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIM 194 (410)
Q Consensus 115 ~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m 194 (410)
+.+.+++....+.+.+-.+.+..++|..+.|-|.|-..|++++.+.+.+...+.. ++.-++|+|++++|..+
T Consensus 231 ~~i~i~is~~~vk~~l~~~c~~~~ns~iv~a~A~dHr~D~lTn~vaLva~~la~~--------~~~~lDP~gailVS~~i 302 (412)
T KOG1485|consen 231 WLIAIMISAKEVKLRLTLYCAIKTNSNIVRANAWDHRNDVLTNSVALVAASLAYY--------YNYWLDPIGAILVSTYI 302 (412)
T ss_pred hhheehhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------hhhcccchhhhhhheeh
Confidence 4445566677777888888899999999999999999999999999998777652 23578999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCC
Q 015269 195 ATLGFQVLIEAVEKLVKDEPP 215 (410)
Q Consensus 195 ~~~~~~il~esi~~Li~~~~~ 215 (410)
+..++.-..+++..|++...+
T Consensus 303 i~t~~~t~~~~i~~Lvg~~a~ 323 (412)
T KOG1485|consen 303 IYTGGRTGLENIKELVGRSAP 323 (412)
T ss_pred hhhhhHHHHHHHHHHhCCCCC
Confidence 999999999999999987444
No 18
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=93.51 E-value=0.088 Score=50.85 Aligned_cols=92 Identities=18% Similarity=0.216 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--hHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchh-HHHHHHHHHHHH
Q 015269 117 MKISNYANIVLLACKIFATIKSG--SIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLR-VQPVGIIIFAAI 193 (410)
Q Consensus 117 l~~sl~~n~~l~i~k~~a~~~s~--S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R-~E~l~~li~sv~ 193 (410)
..+++++|.++.....-.+-..+ |.++.+++.|+..|.+.++.++++.....-. +... ++++++++.+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~d~~~s~~v~i~~~~~~~~-------~~~~~~D~v~~l~i~~~ 181 (284)
T PF01545_consen 109 ALVSIIVNLLLAWYLRRVGKRLQRRSPALRADALHSLIDVLSSLAVLISLLLAYLG-------PWFWYADPVASLLIALF 181 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---SHHHHHHHHHHHHHTS-SSTS-SSSTSSSTT--------STS-SSHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHhhcccccccccccchhhhhhcccchhHHHHHHHHHHHHHHH-------hcccccchhhhhHHHHH
Confidence 66777888888887777766677 9999999999999999998877664443322 2233 899999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC
Q 015269 194 MATLGFQVLIEAVEKLVKDEPP 215 (410)
Q Consensus 194 m~~~~~~il~esi~~Li~~~~~ 215 (410)
++..++.++.+++..|++..++
T Consensus 182 i~~~~~~~~~~~~~~Ll~~~~~ 203 (284)
T PF01545_consen 182 ILYSGYPLIKESIRILLDASPD 203 (284)
T ss_dssp HHHHHHHHHHHHHHHHTT-SHH
T ss_pred Hhhhhhhchhhhhccccccccc
Confidence 9999999999999999987643
No 19
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=90.01 E-value=32 Score=39.71 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=40.3
Q ss_pred cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeec
Q 015269 345 GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 392 (410)
Q Consensus 345 G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~ 392 (410)
.+.-.+.+++.+|++.+++++.++.+++++.|++.|+|++++..+-..
T Consensus 556 ~d~~~~~v~v~lp~Gtsle~t~~~~~~ve~~L~~~p~V~~v~s~vG~~ 603 (1021)
T PF00873_consen 556 SDRGEFYVSVELPPGTSLEETDAIVKQVEDILKEDPEVKSVSSRVGRG 603 (1021)
T ss_dssp --TSEEEEEEEESTTC-HHHHHHHHHHHHHHHHTTTTEEEEEEEESEC
T ss_pred ccCCceEEEEeeccCchHHHHHHHHHHHHHHHHhhhhhhccceEeccc
Confidence 334457899999999999999999999999999999999999888653
No 20
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=89.87 E-value=5 Score=39.39 Aligned_cols=75 Identities=21% Similarity=0.098 Sum_probs=62.6
Q ss_pred HHHHHHHHHhCChhhHHhHHHHHhhHHHHHHHHHHHHHHhh--------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 015269 238 LALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDS--------FYWWIDPAGAILLAVYTITNWSETVMENAVS 309 (410)
Q Consensus 238 ~~l~~~~r~~~s~~l~a~a~d~~~Dv~~n~~~lv~~~l~~~--------~~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~ 309 (410)
+.=..+....+|.++-|++.|..+|++.-++++++..++.. +++-+..++|++=++.++..+.-+++|++..
T Consensus 36 ~iE~i~g~~s~SlaLLADa~Hml~D~~al~lal~A~~~a~r~~~~~~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R 115 (296)
T COG1230 36 LIEIIGGLLTGSLALLADALHMLSDALALLLALIAIKLARRPATKRFTFGYKRLEILAAFLNALLLIVVSLLILWEAIQR 115 (296)
T ss_pred HHHHHHHHHhccHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555678999999999999999999988888777743 2667999999999999999999999999999
Q ss_pred hhc
Q 015269 310 LVG 312 (410)
Q Consensus 310 L~g 312 (410)
+..
T Consensus 116 ~~~ 118 (296)
T COG1230 116 LLA 118 (296)
T ss_pred hcC
Confidence 985
No 21
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=85.35 E-value=9.9 Score=30.52 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCC--HHHHHHHHHHHHHHhhcCCCceEEEEEEeec
Q 015269 320 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELP--LKEAHAIGESLQNKIEKLPEVERAFVHLDYE 392 (410)
Q Consensus 320 ~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~--l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~ 392 (410)
-++|..++.++|++..-..+.+.+.|..=.+.+.+++.++.+ ..+...++++|+++|++.-++. +-|++-+.
T Consensus 6 P~~Ie~vl~~~~~~~~~y~i~v~~~~~~D~l~v~vE~~~~~~~~~~~~~~l~~~i~~~lk~~lgv~-~~V~lv~~ 79 (96)
T PF14535_consen 6 PSQIEEVLREFPEVSPEYQIVVTREGGLDELTVRVELRPGFSDDAEDLEALAERIAERLKERLGVR-PEVELVPP 79 (96)
T ss_dssp HHHHHHHHCTSTTEEEEEEEEEEEETTEEEEEEEEEESTTCCTTHHHHHHHHHHHHHHHHHHHSS--EEEEEE-T
T ss_pred HHHHHHHHHhCcCCCCcEEEEEEcCCCCcEEEEEEEECCccCcchHHHHHHHHHHHHHHHhhcCce-EEEEEECC
Confidence 367889999999998788899999988777889999988764 4678888889999997544663 67777653
No 22
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=85.06 E-value=30 Score=31.57 Aligned_cols=100 Identities=10% Similarity=0.134 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh-CChhhHHhHHHHHhhHHHHHHHHHH
Q 015269 194 MATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS-GNKIVRAYAKDHYFDVVTNVVGLVA 272 (410)
Q Consensus 194 m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~~-~s~~l~a~a~d~~~Dv~~n~~~lv~ 272 (410)
+++.|+..+..++..++...... -..+..+..++++.+....+|.|.++. ++..-+--.+....-...+.+.-++
T Consensus 102 Ll~lg~~aLlsgitaff~~nA~~----~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~ 177 (226)
T COG4858 102 LLFLGAMALLSGITAFFQKNAQV----YGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIA 177 (226)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcc----hhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHHHHH
Confidence 34455556667777788765331 122334444555555555666665443 2222222222222111222211111
Q ss_pred HHHHhh-----hhhhhhhHHHHHHHHHHHH
Q 015269 273 AVLGDS-----FYWWIDPAGAILLAVYTIT 297 (410)
Q Consensus 273 ~~l~~~-----~~~~~Dpi~ailIa~~ii~ 297 (410)
...... ..+-+||+.-.+++..++.
T Consensus 178 v~i~t~~lPtslN~~L~pi~l~IiGav~la 207 (226)
T COG4858 178 VMIATVFLPTSLNPQLPPIALTIIGAVILA 207 (226)
T ss_pred HHHHHhhCCCcCCcCCchHHHHHHHHHHHH
Confidence 111111 2568999987777776654
No 23
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=83.49 E-value=11 Score=30.61 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=38.5
Q ss_pred EEEeee-cCeEEEEEEEEeCCCCCHHH-HHHHHHHHHHHhhcCC--CceEEEEEEe
Q 015269 339 VRAYTF-GVLYFVEVDIELPEELPLKE-AHAIGESLQNKIEKLP--EVERAFVHLD 390 (410)
Q Consensus 339 vr~~~~-G~~~~Vev~I~v~~~~~l~e-ah~I~~~lq~~L~~l~--~v~~v~Vhvd 390 (410)
+++... +..+.+++++.+..+.++.+ +.++.+++.+.++++- .+.++.|+++
T Consensus 50 v~v~~~~~~~i~v~l~v~v~~g~~i~~v~~~iq~~V~~~v~~~tg~~v~~V~V~V~ 105 (108)
T PF03780_consen 50 VKVEVDEDGGITVDLHVVVEYGVNIPEVAEEIQEKVKEAVEEMTGIEVSEVNVHVE 105 (108)
T ss_pred eEEEEccCcceEEEEEEEEECCccHHHHHHHHHHHHHHHHHHHHCCeeEEEEEEEE
Confidence 566655 77899999999998887765 6777777777777543 4556777765
No 24
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=82.42 E-value=17 Score=28.85 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=32.8
Q ss_pred HHHhhHHHHHHHHHHHHHHhhhhhhhhhH---HHHHHHHHHHHHHHHHH
Q 015269 258 DHYFDVVTNVVGLVAAVLGDSFYWWIDPA---GAILLAVYTITNWSETV 303 (410)
Q Consensus 258 d~~~Dv~~n~~~lv~~~l~~~~~~~~Dpi---~ailIa~~ii~~~~~~~ 303 (410)
+...|++.+.++++.+.+.....|-+||+ +-++.+..++..+++++
T Consensus 33 ~Rd~D~~fs~vgLl~g~IL~~~gwRldp~ll~~Q~l~~~~~i~f~~e~i 81 (84)
T PF07444_consen 33 SRDYDIFFSSVGLLYGLILWFQGWRLDPILLFGQMLLVGLLIFFGWETI 81 (84)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44679999999998887776668889999 44555555555555444
No 25
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=79.52 E-value=16 Score=33.09 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHcC--CCc-------cccceEEEeee-cCeEEEEEEEEeC-CCCCHHHHHHHHHHHHHHhhcCCCceEE
Q 015269 317 PEILQKLTYLVIRH--PEV-------KRIDTVRAYTF-GVLYFVEVDIELP-EELPLKEAHAIGESLQNKIEKLPEVERA 385 (410)
Q Consensus 317 ~e~~~~I~~~~~~~--~~V-------~~v~~vr~~~~-G~~~~Vev~I~v~-~~~~l~eah~I~~~lq~~L~~l~~v~~v 385 (410)
+...++|.+.+.++ |.+ .-|+++.+... +..-.|.+.+.++ +.++ ....+.+.++++|+.+|+|+.+
T Consensus 72 ~~~ee~V~eaL~tV~DPei~~nIVeLGlV~~I~Id~~~~~~~~V~I~mtLt~p~c~--~~~~L~~dV~~aL~~l~gV~~V 149 (174)
T TIGR03406 72 EDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCG--MGPVLVEDVEDKVLAVPNVDEV 149 (174)
T ss_pred cccHHHHHHHHcCCCCCCCCCChHHcCCeEEEEEecccCCCCEEEEEEEeCCCCCc--HHHHHHHHHHHHHHhCCCceeE
Confidence 44457788888877 442 12445555441 1211244555554 2343 3577899999999999999999
Q ss_pred EEEEeecCCCCCc
Q 015269 386 FVHLDYECDHKPE 398 (410)
Q Consensus 386 ~Vhvd~~~~~~p~ 398 (410)
.|.+.+++.=.++
T Consensus 150 ~V~l~~dp~W~~~ 162 (174)
T TIGR03406 150 EVELVFDPPWSRE 162 (174)
T ss_pred EEEEEecCCCChH
Confidence 9998876644443
No 26
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=79.32 E-value=54 Score=32.39 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=58.7
Q ss_pred HhhHHHHHHHHHHHHHHhhh---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcC
Q 015269 260 YFDVVTNVVGLVAAVLGDSF---------YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRH 330 (410)
Q Consensus 260 ~~Dv~~n~~~lv~~~l~~~~---------~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~ 330 (410)
..++++..+|++.+++.+.+ .+++-++.++++++++.+.++.....+..+++--..+..-....++.-.+.
T Consensus 78 ~~~ilf~tiGLiiGLlia~l~~~pL~~~~ip~~~~ii~vi~t~il~y~G~~~~~k~~de~~~l~~~~~~~~m~~~~~~~~ 157 (356)
T COG4956 78 VTTILFGTIGLIIGLLIAVLLSSPLFLLPIPFISTIIPVILTIILAYFGFQLADKKRDEFLRLLNPNRREAMKKEEEGEV 157 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhCCccHHHhHHHHHHHHHHHHHhhHHhhhhhHHHHHhcchhhHHHhhhhhhhcc
Confidence 44556665555444433321 578999999999999999999988777766654332211111111111111
Q ss_pred -CCccccceEEEeeecC------eEEEEEEEEeCCCCCHHHHHHHHH
Q 015269 331 -PEVKRIDTVRAYTFGV------LYFVEVDIELPEELPLKEAHAIGE 370 (410)
Q Consensus 331 -~~V~~v~~vr~~~~G~------~~~Vev~I~v~~~~~l~eah~I~~ 370 (410)
+.-.++-|-.+.=-|+ .=|+|=+|.+|. .-+.|-+.|++
T Consensus 158 k~~~~KILDTSvIIDGRI~di~~TGFleG~iiiP~-FVL~ELQ~iAD 203 (356)
T COG4956 158 KPKKPKILDTSVIIDGRIADILQTGFLEGTIIIPQ-FVLLELQHIAD 203 (356)
T ss_pred cCCCCeEeeeceEEcchHHHHHHhCCccceEeeeH-HHHHHHHHHhh
Confidence 2212333333333332 235677777765 34555555554
No 27
>KOG1484 consensus Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily) [Inorganic ion transport and metabolism]
Probab=78.55 E-value=25 Score=35.04 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHhHHHHHhhHHHHHHHHHHHHHHhhh--------hhhhhhHHHHHHHHHHHHHH
Q 015269 228 SIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSF--------YWWIDPAGAILLAVYTITNW 299 (410)
Q Consensus 228 ~i~~~a~vv~~~l~~~~r~~~s~~l~a~a~d~~~Dv~~n~~~lv~~~l~~~~--------~~~~Dpi~ailIa~~ii~~~ 299 (410)
...++.....++..+|+...++-.+.+++.+...|.....+++.+.++.-+- .-.+..+++++=+++.+..+
T Consensus 39 ~f~llnl~~~fv~l~y~~~snSlgLiSda~hm~FDctal~~gL~a~~is~~~~~~~fsyG~~r~evLagF~n~vflvl~a 118 (354)
T KOG1484|consen 39 LFLLLNLAFMFVELFYGSWSNSLGLISDAFHMFFDCTALLAGLYASVISKWPANDKFSYGYGRIEVLAGFVNGVFLVLIA 118 (354)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCCccccCcchhHHHHHHHHHHHHHHHHHH
Confidence 3455566666677778888777789999999999999999999988877441 33567777777888888889
Q ss_pred HHHHHHHHHHhhc
Q 015269 300 SETVMENAVSLVG 312 (410)
Q Consensus 300 ~~~~~e~~~~L~g 312 (410)
+.+..|++..|+.
T Consensus 119 ~fi~~Es~eRl~~ 131 (354)
T KOG1484|consen 119 FFIFSESVERLFD 131 (354)
T ss_pred HHHhHHHHHHhcC
Confidence 9999999999987
No 28
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=78.03 E-value=13 Score=28.01 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=36.9
Q ss_pred HHHHHHHHcC--C----CccccceEEEeeecCeEEEEEEEEeC-CCCCHHHHHHHHHHHHHHhhcCCCceEEEE
Q 015269 321 QKLTYLVIRH--P----EVKRIDTVRAYTFGVLYFVEVDIELP-EELPLKEAHAIGESLQNKIEKLPEVERAFV 387 (410)
Q Consensus 321 ~~I~~~~~~~--~----~V~~v~~vr~~~~G~~~~Vev~I~v~-~~~~l~eah~I~~~lq~~L~~l~~v~~v~V 387 (410)
++|+..+.+. | .+.+..-++--...+ -.|.+.+.++ +.++ ....+.+.++.+|+.+|++..|.|
T Consensus 2 ~~V~~aL~~v~dP~~~~~iv~~g~V~~i~i~~-~~V~v~l~l~~~~~~--~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 2 QAVRDALKQVKDPELGKDIVELGMVRDISIEG-GKVSVSLELPTPACP--AAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp HHHHHHHTT-BETTTSSBTTTTTSEEEEEECT-CEEEEEE--SSTTHT--THHHHHHHHHHHHHTSTT-SEEEE
T ss_pred HHHHHHHhCCCCCCCCCCHHHcCCeeEEEEEC-CEEEEEEEECCCCch--HHHHHHHHHHHHHHhCCCCceEeC
Confidence 3455555554 3 233334444444433 3344556665 4444 568899999999999999998865
No 29
>TIGR02898 spore_YhcN_YlaJ sporulation lipoprotein, YhcN/YlaJ family. YhcN and YlaJ are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic 40-residue C-terminal domain that is not included in the seed alignment for this model. A portion of the low-complexity region between the lipoprotein signal sequence and the main conserved region of the protein family was also excised from the seed alignment.
Probab=76.16 E-value=24 Score=31.39 Aligned_cols=70 Identities=11% Similarity=0.199 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc-CCCceEEEEEEeec
Q 015269 318 EILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLDYE 392 (410)
Q Consensus 318 e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~-l~~v~~v~Vhvd~~ 392 (410)
+.-++|...+.+.| +|.+..+.-.|...+|-+++.= +..-..+.+|..++.+++++ .|.+.+|+|--||+
T Consensus 54 ~~A~~Ia~~v~~v~---~V~dA~vvVtg~~A~Vgv~~~~--~~~~~~~~~iK~~Va~~Vk~~dp~~~~VyVsaDpd 124 (158)
T TIGR02898 54 DVADEIASEAAKVK---GVKDATVVITGNYAYVGVDLTN--GLEGSVTDELKEKVAETVKSTDNRIANVYVSADPD 124 (158)
T ss_pred HHHHHHHHHHhcCC---CCceEEEEEECCEEEEEEEcCC--CcchhhHHHHHHHHHHHHHhhCCCcceEEEEcCHH
Confidence 44556666665555 5577788888999888775553 33335578899999999987 99999999998875
No 30
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=75.56 E-value=26 Score=28.09 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=35.9
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeecCCCCCccc
Q 015269 346 VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHT 400 (410)
Q Consensus 346 ~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~~~~p~h~ 400 (410)
....+.+.+-.+. .+ ....+.+.+++.+..+++++.+.|.++....--|+|.
T Consensus 37 ~~v~i~l~l~~p~-~~--~~~~l~~~i~~al~~l~gv~~v~v~i~~~~~~~~~~~ 88 (99)
T TIGR02945 37 GHVDIQMTLTAPN-CP--VAGSMPGEVENAVRAVPGVGSVTVELVWDPPWTPERM 88 (99)
T ss_pred CeEEEEEEECCCC-CC--hHHHHHHHHHHHHHhCCCCceEEEEEEeeCCCChHHC
Confidence 4444444444333 33 3456889999999999999999998887766666653
No 31
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=72.11 E-value=19 Score=32.13 Aligned_cols=70 Identities=13% Similarity=0.284 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc-CCCceEEEEEEeec
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLDYE 392 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~-l~~v~~v~Vhvd~~ 392 (410)
..+..++|...+.+.+ +|.+..+.-.|...+|-+++.-. . ....+|.+++++++++ .|.+.+|+|--||.
T Consensus 73 ~~~~a~~i~~~v~~~~---~V~~A~vvv~~~~a~Vav~~~~~-~---~~~~~i~~~V~~~v~~~~p~~~~V~Vs~D~~ 143 (177)
T PF09580_consen 73 RQQLADRIANRVKKVP---GVEDATVVVTDDNAYVAVDLDFN-R---FNTKKIKKKVEKAVKSADPRIYNVYVSTDPD 143 (177)
T ss_pred HHHHHHHHHHHHhcCC---CceEEEEEEECCEEEEEEEeccc-c---cchhHHHHHHHHHHHHhCCCccEEEEEcCHH
Confidence 3455667777776665 45777888889999999988833 2 3467889999999985 78889999988874
No 32
>PF10934 DUF2634: Protein of unknown function (DUF2634); InterPro: IPR020288 This entry is represented by the Bacteriophage EJ-1, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Bacteriophage EJ-1, Orf60 function has not been characterised. It has been shown to be simialr to XkdS (P54331 from SWISSPROT), which is encoded on a phage-like element (prophage) of PSBX found in Bacillus subtilis.
Probab=71.46 E-value=19 Score=29.99 Aligned_cols=51 Identities=16% Similarity=0.319 Sum_probs=41.4
Q ss_pred HHHHhhcCCCCh-----HHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEe
Q 015269 306 NAVSLVGQSAPP-----EILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIEL 356 (410)
Q Consensus 306 ~~~~L~g~s~~~-----e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v 356 (410)
....|+|+..|+ |....|++.+..+|.|.+|+++.+-+.|+.+.+.++|..
T Consensus 52 ele~lig~~~~~~~~~sEi~r~I~EaL~~d~rI~~V~~f~f~~~~~~l~v~f~V~t 107 (112)
T PF10934_consen 52 ELEDLIGKNYPREYVESEIEREIEEALLQDPRITSVENFSFEWEGDSLYVSFTVTT 107 (112)
T ss_pred hHHHHhcCCCChHHHHHHHHHHHHHHHhcCCCcceEEEEEEEEECCEEEEEEEEEE
Confidence 345678874444 446778889999999999999999999999999998875
No 33
>COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]
Probab=68.93 E-value=59 Score=27.18 Aligned_cols=73 Identities=29% Similarity=0.417 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHcC--CCccccceEEEeeecCeEE---------EEEEEEe-CCCCCHHHHHHHHHHHHHHhhcCCCc
Q 015269 315 APPEILQKLTYLVIRH--PEVKRIDTVRAYTFGVLYF---------VEVDIEL-PEELPLKEAHAIGESLQNKIEKLPEV 382 (410)
Q Consensus 315 ~~~e~~~~I~~~~~~~--~~V~~v~~vr~~~~G~~~~---------Vev~I~v-~~~~~l~eah~I~~~lq~~L~~l~~v 382 (410)
...+..++|...+... |. ..++ ++..|--|. +.+...+ .+.+++ +..+.+.+++++++.++|
T Consensus 9 ~~~~~~~~i~~aL~~V~DPE-i~id---IvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~--~~~i~~~v~~al~~~~~v 82 (111)
T COG2151 9 AIKVTLEDILEALKTVIDPE-IGID---IVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPL--AEVIADQVEAALEEIPGV 82 (111)
T ss_pred hhhhhHHHHHHHhhcCCCcc-ccee---eEeeccEEEEEEecCCceEEEEEecCCCCCCc--cHHHHHHHHHHHHhcCCc
Confidence 3456678888888887 43 2222 333333222 2222221 256776 578999999999999999
Q ss_pred eEEEEEEeecC
Q 015269 383 ERAFVHLDYEC 393 (410)
Q Consensus 383 ~~v~Vhvd~~~ 393 (410)
+.+.|++..++
T Consensus 83 ~~v~V~l~~~p 93 (111)
T COG2151 83 EDVEVELTLSP 93 (111)
T ss_pred ceEEEEEEEcC
Confidence 99999998765
No 34
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=65.86 E-value=20 Score=26.55 Aligned_cols=61 Identities=20% Similarity=0.229 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEE
Q 015269 317 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERA 385 (410)
Q Consensus 317 ~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v 385 (410)
|..+++|..+..+-. .+++++.+......-...+.|+++.+ ++..+.|.++|+++++|.+|
T Consensus 3 ~GvL~Ri~~vf~rRg--~nI~sl~v~~~~~~~~~riti~v~~~------~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 3 PGVLNRITGVFRRRG--FNIESLSVGPTEDPGISRITIVVSGD------DREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp TTHHHHHHHHHHTTT---EECEEEEEE-SSTTEEEEEEEEES-------CCHHHHHHHHHHCSTTEEEE
T ss_pred cHHHHHHHHHHhcCC--eEEeeEEeeecCCCCEEEEEEEEeeC------chhHHHHHHHHhccCCeEeC
Confidence 557888888887753 57788888886554445566666552 12345688999999988764
No 35
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.99 E-value=22 Score=26.85 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~ 378 (410)
.|-.+.++.+.+.++. .++.+++....+..+...+.+.+|++.++ .++.+.++..-++
T Consensus 9 rpGiv~~vt~~la~~~--~nI~dl~~~~~~~~f~~~~~v~~p~~~~~---~~l~~~l~~l~~~ 66 (75)
T cd04870 9 RPGLTSALTEVLAAHG--VRILDVGQAVIHGRLSLGILVQIPDSADS---EALLKDLLFKAHE 66 (75)
T ss_pred CCCHHHHHHHHHHHCC--CCEEecccEEEcCeeEEEEEEEcCCCCCH---HHHHHHHHHHHHH
Confidence 3567889999998884 45666666666677778888888887654 3344445444433
No 36
>PRK14646 hypothetical protein; Provisional
Probab=62.00 E-value=40 Score=29.80 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcC--CCccccceEEEeeecCeEEEEEEEEeCC--CCCHHHHHHHHHHHHHHhhc
Q 015269 319 ILQKLTYLVIRH--PEVKRIDTVRAYTFGVLYFVEVDIELPE--ELPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 319 ~~~~I~~~~~~~--~~V~~v~~vr~~~~G~~~~Vev~I~v~~--~~~l~eah~I~~~lq~~L~~ 378 (410)
..++|+.++... +.=..+.++.....|....+.|.|.-+. .++++++..+++.|...|..
T Consensus 5 ~~~~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD~ 68 (155)
T PRK14646 5 NKSKLEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIEN 68 (155)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhCc
Confidence 344555544443 2125677888888888888888888763 49999999999999999964
No 37
>PRK14647 hypothetical protein; Provisional
Probab=60.51 E-value=44 Score=29.63 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=39.2
Q ss_pred cccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcC
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKL 379 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l 379 (410)
..+.++.....|....+.|.|.-+...+++++..+++.|...|...
T Consensus 23 ~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD~~ 68 (159)
T PRK14647 23 LELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILDVE 68 (159)
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHccc
Confidence 5567888888888888888888888899999999999999999643
No 38
>PRK14640 hypothetical protein; Provisional
Probab=58.84 E-value=45 Score=29.40 Aligned_cols=46 Identities=7% Similarity=0.033 Sum_probs=38.9
Q ss_pred cccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcC
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKL 379 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l 379 (410)
..+.++...+.|....+.|.|.-+...+++++..+++.|...|...
T Consensus 21 ~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD~~ 66 (152)
T PRK14640 21 FELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMDVE 66 (152)
T ss_pred CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 4577888888888778888888777899999999999999999643
No 39
>COG1302 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.55 E-value=1.1e+02 Score=26.45 Aligned_cols=84 Identities=21% Similarity=0.212 Sum_probs=54.6
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHcCCCccccceEEEee-ecCeEEEEEEEEeCCCCCHHH-HHHHHHHHHHHhhcCC
Q 015269 303 VMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYT-FGVLYFVEVDIELPEELPLKE-AHAIGESLQNKIEKLP 380 (410)
Q Consensus 303 ~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~-~G~~~~Vev~I~v~~~~~l~e-ah~I~~~lq~~L~~l~ 380 (410)
.-+.+..+.|-+.. +-..+...+ +.++.. ..+.+.. -+..+.+++.|.+.-..++.+ |+.|.+.++..++.+-
T Consensus 26 a~~ev~Gv~~m~~~--~~~~~~e~l-~~~n~~--kGV~Ve~~~~~~v~VDvyi~v~YGv~IpeVa~~Iq~~V~~~v~~mt 100 (131)
T COG1302 26 AAEEVEGVVGMAGG--FKDGLTEKL-GKENVT--KGVKVEVGEDQSVAVDVYIIVEYGVKIPEVAENIQERVKEEVENMT 100 (131)
T ss_pred HHHHcCCeeeccch--hhhhHHHHh-CccccC--CCeEEEecCCCcEEEEEEEEEecCCchHHHHHHHHHHHHHHHHHhh
Confidence 44556666664322 566666666 332221 2355555 344589999999998777665 8888888888887544
Q ss_pred --CceEEEEEEee
Q 015269 381 --EVERAFVHLDY 391 (410)
Q Consensus 381 --~v~~v~Vhvd~ 391 (410)
.|..+.||+.=
T Consensus 101 gl~v~~VNV~V~g 113 (131)
T COG1302 101 GLKVVEVNVHVVG 113 (131)
T ss_pred CCceEEEEEEEEE
Confidence 45678888874
No 40
>PRK14634 hypothetical protein; Provisional
Probab=56.45 E-value=49 Score=29.28 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=39.7
Q ss_pred cccceEEEeeecCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHHhhcCC
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIELPEE--LPLKEAHAIGESLQNKIEKLP 380 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v~~~--~~l~eah~I~~~lq~~L~~l~ 380 (410)
..+.++...+.|....+.|.|.-+.. .+++++..+++.|...|...+
T Consensus 22 ~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD~~d 70 (155)
T PRK14634 22 FELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALEASQ 70 (155)
T ss_pred CEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhcccc
Confidence 45778888888888888999988777 999999999999999996433
No 41
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=56.42 E-value=73 Score=25.59 Aligned_cols=23 Identities=35% Similarity=0.725 Sum_probs=18.5
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHH
Q 015269 348 YFVEVDIELPEELPLKEAHAIGE 370 (410)
Q Consensus 348 ~~Vev~I~v~~~~~l~eah~I~~ 370 (410)
+.|++++.+|++|+-+++.++..
T Consensus 2 flV~m~V~~P~~~~~~~~~~i~a 24 (90)
T TIGR03221 2 FHVRMDVNLPVDMPAEKAAAIKA 24 (90)
T ss_pred eEEEEEeeCCCCCCHHHHHHHHH
Confidence 45888899999998888877754
No 42
>PRK00907 hypothetical protein; Provisional
Probab=55.29 E-value=56 Score=26.34 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=43.6
Q ss_pred hhcCCCChHHHHHHHHHHHcC-CCccccceEEEeeecC--eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceE
Q 015269 310 LVGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAYTFGV--LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVER 384 (410)
Q Consensus 310 L~g~s~~~e~~~~I~~~~~~~-~~V~~v~~vr~~~~G~--~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~ 384 (410)
.+|. +.+++.+.|.+++.+| |+ .+-.++..+.+.. ..-+.+.|.+... .+ .+.|-+.|.+.|.|..
T Consensus 22 VmG~-a~~~l~~~V~~vv~~h~p~-~~~~~i~~r~Ss~GkY~Svtv~i~ats~---eQ----ld~iY~~L~~~~~Vkm 90 (92)
T PRK00907 22 AMGT-AERGLETELPRLLAATGVE-LLQERISWKHSSSGKYVSVRIGFRAESR---EQ----YDAAHQALRDHPEVKW 90 (92)
T ss_pred EEEc-CchhHHHHHHHHHHHhCCC-CCcCcEEeccCCCCEEEEEEEEEEECCH---HH----HHHHHHHHhhCCCEEE
Confidence 4563 5788999999999998 54 3445666666644 3446666666442 33 3566777778887743
No 43
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=53.51 E-value=88 Score=24.20 Aligned_cols=63 Identities=13% Similarity=0.206 Sum_probs=44.1
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEE
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 387 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~V 387 (410)
.|..+++|..+..+.. ..|+.+.+-.....-...+.+++.. .+..+.|.+.|+++++|.++.+
T Consensus 13 ~pGVL~Ri~~lf~rRG--fnI~sl~v~~t~~~~~sriti~v~~-------~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 13 RPEVLERVLRVVRHRG--FQVCSMNMTQNTDAQNINIELTVAS-------ERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred CccHHHHHHHHHhcCC--eeeeeEEeeecCCCCEEEEEEEECC-------CchHHHHHHHHhcCcCeEEEEE
Confidence 4678899988887753 4667777766544345566666643 3355788899999999987654
No 44
>PRK14638 hypothetical protein; Provisional
Probab=52.80 E-value=66 Score=28.29 Aligned_cols=45 Identities=9% Similarity=0.177 Sum_probs=37.9
Q ss_pred cccceEEEeeecCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHhhc
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIELPEE-LPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v~~~-~~l~eah~I~~~lq~~L~~ 378 (410)
..+.++.....|....+.|.|.-+.. ++++++..+++.|...|..
T Consensus 23 ~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD~ 68 (150)
T PRK14638 23 LEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLDR 68 (150)
T ss_pred CEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhcc
Confidence 56678888888888888888887655 9999999999999999964
No 45
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=51.81 E-value=73 Score=25.46 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=42.8
Q ss_pred hhcCCCChHHHHHHHHHHHcC-CCccccceEEEeeecC--eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEE
Q 015269 310 LVGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAYTFGV--LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERA 385 (410)
Q Consensus 310 L~g~s~~~e~~~~I~~~~~~~-~~V~~v~~vr~~~~G~--~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v 385 (410)
.+| .+-|++.+.+.+++.++ |+ ....++-.+.+.. ..-|.+.|... ..++ .|.|-+.|.+++.|..+
T Consensus 20 VmG-~a~~~l~~~vv~vvqr~ap~-~~~~~~~~k~SSkGnY~svsI~i~A~---~~EQ----~e~ly~eL~~~~~VkmV 89 (90)
T COG2921 20 VMG-AAGPELEDQVVEVVQRHAPG-DYTPRVSWKPSSKGNYLSVSITIRAT---NIEQ----VEALYRELRKHEIVKMV 89 (90)
T ss_pred ehc-ccchhHHHHHHHHHHHHCCc-ccCceeeeccCCCCceEEEEEEEEEC---CHHH----HHHHHHHHhhCCceEEe
Confidence 355 46789999999999999 55 4455665566644 33366666542 3333 35566777777777543
No 46
>PRK14637 hypothetical protein; Provisional
Probab=51.81 E-value=1.1e+02 Score=26.88 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEE
Q 015269 319 ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHL 389 (410)
Q Consensus 319 ~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhv 389 (410)
..+.+..++.... ..+.++.....|....+.|.|.-++.++++++.++++.|...|........-+.+|
T Consensus 10 ~~~~v~p~~~~~g--~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEV 78 (151)
T PRK14637 10 YFSECEPVVEGLG--CKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEV 78 (151)
T ss_pred HHHHHHHHHHhcC--CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEE
Confidence 3455666666653 56778888888888888888887888999999999999998886432233334444
No 47
>COG2098 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.80 E-value=24 Score=29.23 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHHHhhcCCCceEEEEEEeecCCCCCc
Q 015269 360 LPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPE 398 (410)
Q Consensus 360 ~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~~~~p~ 398 (410)
.+..-+..+...|++.|...|.|+++-||+|++....|.
T Consensus 34 vs~~~a~~le~aI~esi~~QP~v~daeV~Id~~~~K~~~ 72 (116)
T COG2098 34 VSPGTAESLEKAIEESIKVQPFVEDAEVKIDRDKEKLDG 72 (116)
T ss_pred CCccchHHHHHHHHHHHhcCCceeeEEEEeccccccccc
Confidence 344457778888888888899999999999998555443
No 48
>PRK02047 hypothetical protein; Provisional
Probab=50.80 E-value=69 Score=25.63 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=42.4
Q ss_pred hcCCCChHHHHHHHHHHHcCCCccccceEEEeeecC--eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceE
Q 015269 311 VGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV--LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVER 384 (410)
Q Consensus 311 ~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~--~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~ 384 (410)
+| ...+++.+.|.+++..+..-.+-.++..+.+.. ..-+.+.+.+... + -.+.|-+.|.+.|.|..
T Consensus 22 IG-~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~v~s~---e----q~~~iY~~L~~~~~Vk~ 89 (91)
T PRK02047 22 MG-KAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSR---E----QLDNIYRALTGHPMVKV 89 (91)
T ss_pred EE-eCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEEECCH---H----HHHHHHHHHhhCCCEEE
Confidence 45 346788999999999983333345676776644 3446666666442 2 34566777777787754
No 49
>PRK10263 DNA translocase FtsK; Provisional
Probab=50.58 E-value=3.8e+02 Score=31.96 Aligned_cols=29 Identities=10% Similarity=0.277 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 015269 267 VVGLVAAVLGDSFYWWIDPAGAILLAVYT 295 (410)
Q Consensus 267 ~~~lv~~~l~~~~~~~~Dpi~ailIa~~i 295 (410)
.+|+++.+++..+.+++-.+|+.++.+.+
T Consensus 142 gGGIIG~lLs~lL~~LfG~vGa~LILLll 170 (1355)
T PRK10263 142 SGGVIGSLLSTTLQPLLHSSGGTIALLCV 170 (1355)
T ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677766666655665555555544333
No 50
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.68 E-value=76 Score=23.71 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCC
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEE 359 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~ 359 (410)
-|-...++...+.++. .+|++.++...++.+.+++-.+.+++
T Consensus 11 r~gLl~~i~~~l~~~~--l~I~~A~i~T~~~~~v~D~F~v~~~~ 52 (73)
T cd04900 11 RPGLFARIAGALDQLG--LNILDARIFTTRDGYALDTFVVLDPD 52 (73)
T ss_pred CCCHHHHHHHHHHHCC--CCeEEeEEEEeCCCeEEEEEEEECCC
Confidence 3556788888888875 68899999988777777777766654
No 51
>PRK14633 hypothetical protein; Provisional
Probab=48.71 E-value=81 Score=27.69 Aligned_cols=57 Identities=4% Similarity=0.062 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcC
Q 015269 320 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKL 379 (410)
Q Consensus 320 ~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l 379 (410)
.+.+..++... | ..+.++.....|. ..+.|.|.-++.++++++..+++.|...|...
T Consensus 7 ~~lv~p~~~~~-G-~eL~dve~~~~~~-~~lrV~ID~~~Gv~lddC~~vSr~i~~~LD~~ 63 (150)
T PRK14633 7 YEIVEPITADL-G-YILWGIEVVGSGK-LTIRIFIDHENGVSVDDCQIVSKEISAVFDVE 63 (150)
T ss_pred HHHHHHHHHHC-C-CEEEEEEEEeCCC-cEEEEEEeCCCCCCHHHHHHHHHHHHHHhccC
Confidence 33444444443 2 4556777666666 47788887788899999999999999999743
No 52
>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase. There are two distinct classes of hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase enzymes: class I consists of eukaryotic and most archaeal enzymes (1.1.1.34 from EC), while class II consists of prokaryotic enzymes (1.1.1.88 from EC) [, ]. Class I HMG-CoA reductases catalyse the NADP-dependent synthesis of mevalonate from 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA). In vertebrates, membrane-bound HMG-CoA reductase is the rate-limiting enzyme in the biosynthesis of cholesterol and other isoprenoids. In plants, mevalonate is the precursor of all isoprenoid compounds []. The reduction of HMG-CoA to mevalonate is regulated by feedback inhibition by sterols and non-sterol metabolites derived from mevalonate, including cholesterol. In archaea, HMG-CoA reductase is a cytoplasmic enzyme involved in the biosynthesis of the isoprenoids side chains of lipids []. Class I HMG-CoA reductases consist of an N-terminal membrane domain (lacking in archaeal enzymes), and a C-terminal catalytic region. The catalytic region can be subdivided into three domains: an N-domain (N-terminal), a large L-domain, and a small S-domain (inserted within the L-domain). The L-domain binds the substrate, while the S-domain binds NADP. Class II HMG-CoA reductases catalyse the reverse reaction of class I enzymes, namely the NAD-dependent synthesis of HMG-CoA from mevalonate and CoA []. Some bacteria, such as Pseudomonas mevalonii, can use mevalonate as the sole carbon source. Class II enzymes lack a membrane domain. Their catalytic region is structurally related to that of class I enzymes, but it consists of only two domains: a large L-domain and a small S-domain (inserted within the L-domain). As with class I enzymes, the L-domain binds substrate, but the S-domain binds NAD (instead of NADP in class I).; GO: 0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity, 0050662 coenzyme binding, 0015936 coenzyme A metabolic process, 0055114 oxidation-reduction process; PDB: 2Q6B_C 2Q6C_D 1HWI_C 1HWJ_C 3CD5_B 2R4F_C 1HWL_B 1HWK_C 1DQA_B 3CCT_D ....
Probab=48.55 E-value=1e+02 Score=31.32 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=46.9
Q ss_pred cccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc-CCCceEEEEEEeecCCCCCccc
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLDYECDHKPEHT 400 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~-l~~v~~v~Vhvd~~~~~~p~h~ 400 (410)
-++.++.++..|+.+++.+++....-|=-.-.....+.+...|++ .++.....|.-.+..+.||+..
T Consensus 139 ggl~~i~~~~~g~~v~l~~~~dtgDAMGaNmvn~~~e~v~~~i~~~~~~~~~~~I~sN~~~dKK~s~~ 206 (373)
T PF00368_consen 139 GGLRDIEVRIVGRFVHLRFHYDTGDAMGANMVNTATEAVCPWIEEQFGGMVLMSILSNLCTDKKPSAI 206 (373)
T ss_dssp EEEEEEEEEECSTEEEEEEEEEETTC--HHHHHHHHHHHHHHHHHHHTSEEEEEEE-SSSCCSS--HH
T ss_pred eeeeEEEEEecCCEEEEEEEEEccccchhhHHHHHHHHHHHHHHHhcccceEEeeecccchhhhhhhh
Confidence 556677777789999999999998766555566667777777753 5676778888888888888764
No 53
>PRK00341 hypothetical protein; Provisional
Probab=48.30 E-value=71 Score=25.60 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=42.4
Q ss_pred hhcCCCChHHHHHHHHHHHcCCCccccceEEEeeecCe--EEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCce
Q 015269 310 LVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVL--YFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVE 383 (410)
Q Consensus 310 L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~--~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~ 383 (410)
.+| .+.+++.+.|.+++.++.. .+...+..+.+... .-+.+.|.+... +-.+.+-+.|.+.|.|.
T Consensus 22 ViG-~~~~~~~~~V~~iv~~~~~-~~~~~~~~k~Ss~GkY~S~tv~i~~~s~-------~q~~~iy~~L~~~~~V~ 88 (91)
T PRK00341 22 VIG-DTGVGFKDLVIEILQKHAD-VDLSTLAERQSSNGKYTTVQLHIVATDE-------DQLQDINSALRATGRVH 88 (91)
T ss_pred EEE-cCchhHHHHHHHHHHHhCC-CcccceeeccCCCCEEEEEEEEEEECCH-------HHHHHHHHHHhhCCCEE
Confidence 355 3578899999999998852 23556666666443 336666666442 23466777788888875
No 54
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=47.86 E-value=1.2e+02 Score=26.59 Aligned_cols=59 Identities=8% Similarity=0.073 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcC
Q 015269 319 ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKL 379 (410)
Q Consensus 319 ~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l 379 (410)
+.+.+..++... | ..+.++.....|+...+.|.|.-+...+++++..+++.+...|...
T Consensus 9 i~~~~~~~~~~~-g-~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 9 LTELIEPVVEAL-G-YELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLDVE 67 (154)
T ss_pred HHHHHHHHHHHC-C-CEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 334444455444 2 4578888888888888888888777899999999999999999643
No 55
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=47.23 E-value=81 Score=23.71 Aligned_cols=54 Identities=22% Similarity=0.432 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeec------CeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFG------VLYFVEVDIELPEELPLKEAHAIGESLQN 374 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G------~~~~Vev~I~v~~~~~l~eah~I~~~lq~ 374 (410)
.|-.+.+|...+.++. .+|.+++....+ ..++..+.+.+|++.++ .++.+.++.
T Consensus 9 ~~Giv~~it~~l~~~~--~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~---~~l~~~l~~ 68 (81)
T cd04869 9 RPGIVHEVTQFLAQRN--INIEDLSTETYSAPMSGTPLFKAQATLALPAGTDL---DALREELEE 68 (81)
T ss_pred CCCHHHHHHHHHHHcC--CCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCH---HHHHHHHHH
Confidence 4567889999999883 345555555544 45667888888876554 344455544
No 56
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.56 E-value=1.2e+02 Score=22.97 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHh
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKI 376 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L 376 (410)
.|....++...+..+. .+|.+.+++...+.+.++.-.+.+.+- ++..++.+.+|++|
T Consensus 11 r~gLFa~iag~L~~~~--LnI~~A~i~tt~dG~~LDtF~V~d~~~--~~~~~~~~~~~~~~ 67 (68)
T cd04928 11 KPKLLSQLSSLLGDLG--LNIAEAHAFSTDDGLALDIFVVTGWKR--GETAALGHALQKEI 67 (68)
T ss_pred CcchHHHHHHHHHHCC--CceEEEEEEEcCCCeEEEEEEEecCCc--cchHHHHHHHHHhh
Confidence 3556777777777764 678899999998888989888887654 66777888888765
No 57
>PRK11023 outer membrane lipoprotein; Provisional
Probab=46.53 E-value=38 Score=30.92 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=46.4
Q ss_pred HhhcCCCChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCH-HHHHH--HHHHHHHHhhcCCCceEE
Q 015269 309 SLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPL-KEAHA--IGESLQNKIEKLPEVERA 385 (410)
Q Consensus 309 ~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l-~eah~--I~~~lq~~L~~l~~v~~v 385 (410)
.|.|..++++..++..+++.+.+||++|++- +.|. +..+. ...+| |..+++.+|..-+.+...
T Consensus 80 ~L~G~V~~~~~k~~A~~ia~~v~GV~~V~N~------------l~V~--~~~~~~~~~~D~~It~kik~~L~~~~~v~~~ 145 (191)
T PRK11023 80 LLTGQSPNAELSERAKQIAMGVEGVNEVYNE------------IRQG--QPIGLGTASKDTWITTKVRSQLLTSDSVKSS 145 (191)
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCceeecce------------eeec--cccccccccCcHHHHHHHHHHHhcCCCCCcc
Confidence 4889888889999999999999999988652 1121 11111 12333 888999999755666655
Q ss_pred EEEEee
Q 015269 386 FVHLDY 391 (410)
Q Consensus 386 ~Vhvd~ 391 (410)
-|+++-
T Consensus 146 ~I~V~t 151 (191)
T PRK11023 146 NVKVTT 151 (191)
T ss_pred eEEEEE
Confidence 555553
No 58
>PRK14632 hypothetical protein; Provisional
Probab=45.79 E-value=99 Score=27.84 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=39.7
Q ss_pred HHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcC
Q 015269 321 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKL 379 (410)
Q Consensus 321 ~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l 379 (410)
+.+..++.+. | ..+.++.... |....+.|.|.=+..++++++..+++.|...|...
T Consensus 12 ~li~pv~~~~-G-~eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD~~ 67 (172)
T PRK14632 12 DMAGPFLASL-G-LELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALEVE 67 (172)
T ss_pred HHHHHHHHHC-C-CEEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 3344444443 2 4556677554 66677888888777899999999999999999643
No 59
>PRK00106 hypothetical protein; Provisional
Probab=45.08 E-value=56 Score=34.89 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHhh---cCCCceEEEEE
Q 015269 320 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEE-LPLKEAHAIGESLQNKIE---KLPEVERAFVH 388 (410)
Q Consensus 320 ~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~-~~l~eah~I~~~lq~~L~---~l~~v~~v~Vh 388 (410)
+++++.++.+++||.+ ..+.+.|+.+- |.|.|+ .+-.++..++..|.++|+ .+|+--.|+|-
T Consensus 460 l~~lE~ia~~~~gV~~---~yaiqaGREiR----viV~p~~v~D~~~~~la~~ia~~Ie~~~~yPG~ikvtvi 525 (535)
T PRK00106 460 LRDLEEIANSFDGVQN---SFALQAGREIR----IMVQPEKISDDQVTILAHKVREKIENNLDYPGNIKVTVI 525 (535)
T ss_pred HHHHHHHHhcCCcHHH---HHHHhcCCeEE----EEecCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 6778889999988754 45666798655 444444 777788888888888886 47776666653
No 60
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=43.92 E-value=2.6e+02 Score=25.65 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 015269 231 IGATVVKLALWIYCKSSG 248 (410)
Q Consensus 231 ~~a~vv~~~l~~~~r~~~ 248 (410)
+++++.-.+.|++.|+.+
T Consensus 185 iig~i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 185 IIGVIAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 333333334455555543
No 61
>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR). Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture.
Probab=43.23 E-value=2e+02 Score=29.67 Aligned_cols=80 Identities=14% Similarity=0.280 Sum_probs=49.2
Q ss_pred HHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc-CCCceEEEEEEeecCCCCCcc
Q 015269 321 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLDYECDHKPEH 399 (410)
Q Consensus 321 ~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~-l~~v~~v~Vhvd~~~~~~p~h 399 (410)
++|++.+.+...--++.++..+..|+.+++.+.+....-|=-.-.....+.+...|++ .|+.....+.=.+..|.+|..
T Consensus 152 ~~i~~~a~stsr~g~l~~i~~~~~g~~v~lrf~~~TgDAMG~NMv~~~~e~v~~~i~~~~~~~~~~~i~gN~~tdKK~sa 231 (403)
T cd00643 152 EAIKEVAESTSRHARLQSIKPYIAGRSVYLRFEYTTGDAMGMNMVTKATEAACDWIEENFPDMEVISLSGNFCTDKKPSA 231 (403)
T ss_pred HHHHHHHHhcCCCcccceEEEEecCCEEEEEEEEEcCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchh
Confidence 4444444444444566777778789877777777765544333345556666666653 455555666666777877765
Q ss_pred c
Q 015269 400 T 400 (410)
Q Consensus 400 ~ 400 (410)
.
T Consensus 232 ~ 232 (403)
T cd00643 232 I 232 (403)
T ss_pred h
Confidence 3
No 62
>PRK12704 phosphodiesterase; Provisional
Probab=39.85 E-value=74 Score=33.89 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCC-CCHHHHHHHHHHHHHHhh---cCCCceEEEEE
Q 015269 320 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEE-LPLKEAHAIGESLQNKIE---KLPEVERAFVH 388 (410)
Q Consensus 320 ~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~-~~l~eah~I~~~lq~~L~---~l~~v~~v~Vh 388 (410)
++++..++.+++||.+..- .+.|+.+- |.|+|+ .+-.+++.++..|.++|+ .+|+--.|+|-
T Consensus 445 l~~le~i~~~~~gv~~~ya---iqaGreir----v~v~~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 510 (520)
T PRK12704 445 LEKLEEIANSFEGVEKAYA---IQAGREIR----VIVKPDKVDDLQAVRLARDIAKKIEEELQYPGQIKVTVI 510 (520)
T ss_pred HHHHHHHHHhCCcHHHHHH---HhcCceEE----EEeCCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 5678888888888766544 56798554 555554 777889999999999996 47777666663
No 63
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=39.32 E-value=3.1e+02 Score=26.04 Aligned_cols=84 Identities=14% Similarity=-0.015 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHHhHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 015269 226 LYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVME 305 (410)
Q Consensus 226 ~i~i~~~a~vv~~~l~~~~r~~~s~~l~a~a~d~~~Dv~~n~~~lv~~~l~~~~~~~~Dpi~ailIa~~ii~~~~~~~~e 305 (410)
+....+++.+++..=-...|+.+....-....|...|.++=. +.=+++.+.+...-.+++-++..+|++..+.++.+=
T Consensus 38 a~~~i~lA~i~DglDG~VAR~~~~~s~~G~~lDSLaD~VsFg--VaPA~l~y~~~~~~~~~~~~~a~~~~~~~alRLArF 115 (234)
T COG1183 38 ALLLILLALILDGLDGRVARKLNAKSAFGAELDSLADLVSFG--VAPALLLYSSGLNTGPLGLLAALLYVLCGALRLARF 115 (234)
T ss_pred HHHHHHHHHHHcccchHHHHhcCCcchHHHHHhHHHHHHHhh--HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHc
Confidence 334445566666655556677666555577888999988744 222233322212226788888889999999999887
Q ss_pred HHHHhh
Q 015269 306 NAVSLV 311 (410)
Q Consensus 306 ~~~~L~ 311 (410)
|+..--
T Consensus 116 N~~~~~ 121 (234)
T COG1183 116 NVKTND 121 (234)
T ss_pred cCcccC
Confidence 765543
No 64
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=38.56 E-value=1.3e+02 Score=21.95 Aligned_cols=61 Identities=16% Similarity=0.283 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEe
Q 015269 318 EILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 390 (410)
Q Consensus 318 e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd 390 (410)
+..+++.+.+.+.|+|..++.+ .|+ .+.+. +.++. ..++.+-+.+.|.++|+|.+...++-
T Consensus 10 ~~~~~~~~~l~~~p~V~~~~~v----tG~~d~~~~--v~~~d------~~~l~~~i~~~l~~~~gV~~~~t~iv 71 (74)
T PF01037_consen 10 DAYDEFAEALAEIPEVVECYSV----TGEYDLILK--VRARD------MEELEEFIREKLRSIPGVRRTETSIV 71 (74)
T ss_dssp THHHHHHHHHHTSTTEEEEEEE----SSSSSEEEE--EEESS------HHHHHHHHHHTHHTSTTEEEEEEEEE
T ss_pred chHHHHHHHHHcCCCEEEEEEE----eCCCCEEEE--EEECC------HHHHHHHHHHHhhcCCCEEEEEEEEE
Confidence 3588899999999988766432 244 45544 44432 24455556666899999998877664
No 65
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=38.35 E-value=1.1e+02 Score=23.27 Aligned_cols=31 Identities=23% Similarity=0.126 Sum_probs=21.0
Q ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHH
Q 015269 170 INIYKYPIGKLRVQPVGIIIFAAIMATLGFQ 200 (410)
Q Consensus 170 ~~~~~~P~G~~R~E~l~~li~sv~m~~~~~~ 200 (410)
+...++..+..++|.+..++=++++++.++-
T Consensus 50 ~~~~~~~~~~~~lE~~WTiiP~iiLl~l~~p 80 (84)
T PF02790_consen 50 KFPNKFFNHNNKLEIIWTIIPAIILLFLAFP 80 (84)
T ss_dssp SSS--S---SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHHhh
Confidence 4445777788889999999999988877764
No 66
>PRK10764 potassium-tellurite ethidium and proflavin transporter; Provisional
Probab=38.24 E-value=3.5e+02 Score=26.74 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 015269 187 IIIFAAIMATLGFQVLIEAVEKLVK 211 (410)
Q Consensus 187 ~li~sv~m~~~~~~il~esi~~Li~ 211 (410)
.-.++..|.+.|+..+.....+...
T Consensus 11 ~~~f~~~mG~~gL~~~~~~~~~~~~ 35 (324)
T PRK10764 11 AGYFGIVLGLIGLGFAWRYAAQLWP 35 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3458888988998888877666554
No 67
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=38.00 E-value=1.7e+02 Score=21.94 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHcCCCccccceEEEeee--cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEE
Q 015269 317 PEILQKLTYLVIRHPEVKRIDTVRAYTF--GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERA 385 (410)
Q Consensus 317 ~e~~~~I~~~~~~~~~V~~v~~vr~~~~--G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v 385 (410)
+..+..|...+.+.. ..|.++.+... +....+.+.+.++.. ++ -+.+-++|+++|+|.+|
T Consensus 17 ~GlL~dI~~~i~~~~--~nI~~i~~~~~~~~~~~~~~l~v~V~d~---~~----L~~ii~~L~~i~~V~~V 78 (80)
T PF13291_consen 17 PGLLADITSVISENG--VNIRSINARTNKDDGTARITLTVEVKDL---EH----LNQIIRKLRQIPGVISV 78 (80)
T ss_dssp TTHHHHHHHHHHCSS--SEEEEEEEEE--ETTEEEEEEEEEESSH---HH----HHHHHHHHCTSTTEEEE
T ss_pred CCHHHHHHHHHHHCC--CCeEEEEeEEeccCCEEEEEEEEEECCH---HH----HHHHHHHHHCCCCeeEE
Confidence 457888888888873 56777777775 457789999999642 22 25566778889999876
No 68
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=36.44 E-value=1.3e+02 Score=26.13 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeec
Q 015269 317 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 392 (410)
Q Consensus 317 ~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~ 392 (410)
++..+.+...+.++|+|..++.+ .|+ +.+-+.+..+. ..++.+-+.+.+.+.|+|.++..++--.
T Consensus 80 ~~~~~~~~~~l~~~p~V~~~~~~----tG~-~dl~~~v~~~d------~~~l~~~~~~~l~~~~gV~~~~t~ivl~ 144 (153)
T PRK11179 80 AKDYPSALAKLESLDEVVEAYYT----TGH-YSIFIKVMCRS------IDALQHVLINKIQTIDEIQSTETLISLQ 144 (153)
T ss_pred cccHHHHHHHHhCCCCEEEEEEc----ccC-CCEEEEEEECC------HHHHHHHHHHHhhcCCCeeeEEEEEEEe
Confidence 44567788888888987766544 254 33344444543 2345556677888899999877777643
No 69
>PRK14639 hypothetical protein; Provisional
Probab=35.86 E-value=1.2e+02 Score=26.36 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=39.0
Q ss_pred cccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcC
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKL 379 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l 379 (410)
..+.++...+.|....+.+.|.-+..++++++..+++.|...|...
T Consensus 12 ~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD~~ 57 (140)
T PRK14639 12 VSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFDVE 57 (140)
T ss_pred CEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhccc
Confidence 4567788888888888899998778899999999999999999643
No 70
>PHA02975 hypothetical protein; Provisional
Probab=35.66 E-value=2e+02 Score=21.88 Aligned_cols=33 Identities=6% Similarity=0.212 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCCC
Q 015269 183 QPVGIIIFAAIMATLG--FQVLIEAVEKLVKDEPP 215 (410)
Q Consensus 183 E~l~~li~sv~m~~~~--~~il~esi~~Li~~~~~ 215 (410)
|-+.+-++|++|-..- +.=..+.++..++.+..
T Consensus 2 dKLYaaiFGvFmsS~DdDF~nFI~vVksVLtdk~~ 36 (69)
T PHA02975 2 EKLFTGTYGVFLESNDSDFEDFIDTIMHVLTGKKE 36 (69)
T ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHcCCCC
Confidence 4455666777765332 44456777777776633
No 71
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=35.49 E-value=1.2e+02 Score=32.32 Aligned_cols=62 Identities=21% Similarity=0.210 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCC-CCCHHHHHHHHHHHHHHhh---cCCCceEEEEE
Q 015269 320 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPE-ELPLKEAHAIGESLQNKIE---KLPEVERAFVH 388 (410)
Q Consensus 320 ~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~-~~~l~eah~I~~~lq~~L~---~l~~v~~v~Vh 388 (410)
++.+..++..++||.+. .+.+.|+.+-| .|.| ..+-.++..++..|.++|+ .+|+--.|+|-
T Consensus 439 l~~le~i~~~~~gv~~~---~aiqaGreirv----~v~~~~v~d~~~~~la~~i~~~ie~~~~ypg~ikvtvi 504 (514)
T TIGR03319 439 LEKLEEIANSFEGVEKS---YAIQAGREIRV----MVKPEKISDDQAVVLARDIAKKIEEELEYPGQIKVTVI 504 (514)
T ss_pred HHHHHHHHHhCCCchhh---hhhhcCcEEEE----EecCCcCChHHHHHHHHHHHHHHHHhCcCCCceEEEEE
Confidence 45688888888876554 45577996554 4444 4777888889999999996 47776666663
No 72
>PRK14636 hypothetical protein; Provisional
Probab=35.43 E-value=2.4e+02 Score=25.51 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCC--CCCHHHHHHHHHHHHHHhhcCCCc
Q 015269 318 EILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPE--ELPLKEAHAIGESLQNKIEKLPEV 382 (410)
Q Consensus 318 e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~--~~~l~eah~I~~~lq~~L~~l~~v 382 (410)
++.+.+..++.... ..+.++.....|....+.|.|.-++ .++++++..+++.|...|...+.+
T Consensus 6 ~i~~lvep~~~~~G--leLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD~~d~i 70 (176)
T PRK14636 6 ALTALIEPEAKALG--LDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFDELDPI 70 (176)
T ss_pred HHHHHHHHHHHHcC--CEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccCcCC
Confidence 34445555555542 4567888877788888888887553 499999999999999999643333
No 73
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=35.29 E-value=1.7e+02 Score=22.00 Aligned_cols=57 Identities=19% Similarity=0.339 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~ 378 (410)
.|.....+...+.++. -++.+++....|..+...+.+..+++ ...++...+++.-++
T Consensus 12 rpGiv~~v~~~l~~~g--~ni~d~~~~~~~~~f~~~~~v~~~~~----~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 12 RPGIVAAVTGVLAEHG--CNIEDSRQAVLGGRFTLIMLVSIPED----SLERLESALEELAEE 68 (76)
T ss_dssp -TTHHHHHHHHHHCTT---EEEEEEEEEETTEEEEEEEEEESHH----HHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHCC--CcEEEEEEEEEcCeEEEEEEEEeCcc----cHHHHHHHHHHHHHH
Confidence 4667889999999885 47788999999999888899998833 334444444444333
No 74
>PLN02601 beta-carotene hydroxylase
Probab=35.23 E-value=4.3e+02 Score=25.72 Aligned_cols=20 Identities=25% Similarity=-0.027 Sum_probs=12.5
Q ss_pred HHhhHHHHHHHHHHHHHHhh
Q 015269 259 HYFDVVTNVVGLVAAVLGDS 278 (410)
Q Consensus 259 ~~~Dv~~n~~~lv~~~l~~~ 278 (410)
-+||++.-+.++.+..+..+
T Consensus 179 E~NDlFaVifAvpAIaL~~~ 198 (303)
T PLN02601 179 ELNDVFAIVNAVPAIGLLYY 198 (303)
T ss_pred ccccchhhhhHHHHHHHHHH
Confidence 47888777666655544443
No 75
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=35.09 E-value=2.3e+02 Score=22.55 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCc
Q 015269 157 GGILWFTHVAMKNINIYKYPI 177 (410)
Q Consensus 157 ~~i~l~~~~~~~~~~~~~~P~ 177 (410)
.+...++...+.+.+..+||+
T Consensus 84 ~v~~I~~~~~a~~g~~~~~P~ 104 (109)
T PF09685_consen 84 LVLSIIGAIKANKGEPYRYPF 104 (109)
T ss_pred HHHHHHHHHHHHCCCeeecCe
Confidence 334444555666667788886
No 76
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=34.55 E-value=5.7e+02 Score=28.69 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=20.8
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015269 173 YKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLV 210 (410)
Q Consensus 173 ~~~P~G~~R~E~l~~li~sv~m~~~~~~il~esi~~Li 210 (410)
.++++..+.+=.+..++.++++.+.++.+..-|+++++
T Consensus 144 ~~~~~~~eei~s~~il~~~~l~G~~~~~i~~~sl~~il 181 (764)
T TIGR02865 144 TKHLLTNEEIVSLIILIASVLTGLRGLSIWGLSLENII 181 (764)
T ss_pred ccCCCcHhHHHHHHHHHHHHHHccCCCEEEeeEHHHHH
Confidence 46666666655555555555555455554444555543
No 77
>PRK14635 hypothetical protein; Provisional
Probab=34.35 E-value=2.6e+02 Score=24.77 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=37.0
Q ss_pred cccceEEEeeecCeEEEEEEEEe----CCCCCHHHHHHHHHHHHHHhhc
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIEL----PEELPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v----~~~~~l~eah~I~~~lq~~L~~ 378 (410)
..+.++.+...|....+.|.|.- ++..+++++..+++.+...|..
T Consensus 20 ~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD~ 68 (162)
T PRK14635 20 VKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELER 68 (162)
T ss_pred CEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhCC
Confidence 56778888888888888888864 2459999999999999999964
No 78
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=33.92 E-value=2.2e+02 Score=21.98 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEE
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAF 386 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~ 386 (410)
.|..+.+|..+..+.. .+|+.+.+-.....-.-.+.|++.++ .+..+.+.++|+++.+|.+|.
T Consensus 12 ~pGVL~Ri~~lf~rRg--fNI~Sl~vg~te~~~~sriti~~~~~------~~~i~qi~kQL~KLidV~~V~ 74 (76)
T PRK06737 12 DPSVLLRISGIFARRG--YYISSLNLNERDTSGVSEMKLTAVCT------ENEATLLVSQLKKLINVLQVN 74 (76)
T ss_pred CCCHHHHHHHHHhccC--cceEEEEecccCCCCeeEEEEEEECC------HHHHHHHHHHHhCCcCEEEEE
Confidence 4678899988887753 35556655544443344556665443 346678889999998887653
No 79
>PRK14645 hypothetical protein; Provisional
Probab=33.90 E-value=3.1e+02 Score=24.21 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=42.2
Q ss_pred HHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeC--CCCCHHHHHHHHHHHHHHhhcC
Q 015269 320 LQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELP--EELPLKEAHAIGESLQNKIEKL 379 (410)
Q Consensus 320 ~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~--~~~~l~eah~I~~~lq~~L~~l 379 (410)
.+.+...+... + ..+.++.+.+.|+...+.|.|.-+ .+++++++..+++.|...|...
T Consensus 12 ~~li~~~~~~~-G-~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD~~ 71 (154)
T PRK14645 12 QQLAEGALEPL-G-YEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELDRL 71 (154)
T ss_pred HHHHHHHHHHc-C-CEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhccc
Confidence 33344444444 2 567788888888877888888753 2499999999999999999643
No 80
>KOG1482 consensus Zn2+ transporter [Inorganic ion transport and metabolism]
Probab=32.90 E-value=1.9e+02 Score=29.32 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=47.8
Q ss_pred HHhCChhhHHhHHHHHhhHHHHHHHHHHHHHHhh-------h-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 015269 245 KSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDS-------F-YWWIDPAGAILLAVYTITNWSETVMENAVSLVGQ 313 (410)
Q Consensus 245 r~~~s~~l~a~a~d~~~Dv~~n~~~lv~~~l~~~-------~-~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~ 313 (410)
+..+|-++.++|.|...|+..=...+.+.++..+ | |.=+|.+||++=.+.|-..-..++++++..++-.
T Consensus 94 ~~a~SLAImTDAaHlLsD~~sf~isl~slw~s~~pa~~r~sfG~~R~Evlgal~Sv~~IW~~tgvLV~~Ai~Rl~s~ 170 (379)
T KOG1482|consen 94 YKANSLAIMTDAAHLLSDVASFIISLFSLWLSSRPATKRMSFGFHRAEVLGALVSVLLIWVVTGVLVYEAIQRLLSG 170 (379)
T ss_pred eeccchhhhhcchHHHHHHHHHHHHHHHHHHccCCCCCceecceehHHHHHHHHHHHHHHHhhhhhHHHHHhhhhcC
Confidence 4445777889999999999888877777777653 1 3357877776544444445556788888777643
No 81
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=32.15 E-value=1.9e+02 Score=22.76 Aligned_cols=65 Identities=14% Similarity=0.204 Sum_probs=39.1
Q ss_pred CCChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEE
Q 015269 314 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 387 (410)
Q Consensus 314 s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~V 387 (410)
...||.++++....... |. .+-.+..-..-..-.+.+++.|+.+-++ +-|...|+|+..|..+.|
T Consensus 11 r~~pe~leRVLrvtrhR-GF-~vcamnmt~~~da~~~nie~tV~s~R~~-------~lL~~QLeKl~Dv~~V~i 75 (86)
T COG3978 11 RFNPETLERVLRVTRHR-GF-RVCAMNMTAAVDAGNANIELTVDSDRSV-------DLLTSQLEKLYDVAHVEI 75 (86)
T ss_pred cCChHHHHHHHHHhhhc-Ce-EEEEeecccccccccceEEEEEcCCCCh-------HHHHHHHHHHccceeEEE
Confidence 45789999999887543 31 1222222222122234555667777665 567889999998876544
No 82
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.13 E-value=2e+02 Score=20.98 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHcCCCccccceEEEeee-cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEE
Q 015269 317 PEILQKLTYLVIRHPEVKRIDTVRAYTF-GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 387 (410)
Q Consensus 317 ~e~~~~I~~~~~~~~~V~~v~~vr~~~~-G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~V 387 (410)
|..+.+|...+.+.. .++..+..... +....+.+.+.+.+ ..+--+++.++|+++|+|.+|.+
T Consensus 11 ~g~l~~I~~~la~~~--inI~~i~~~~~~~~~~~i~~~v~v~~------~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 11 PGVLSKVLNTIAQVR--GNVLTINQNIPIHGRANVTISIDTST------MNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred CchHHHHHHHHHHcC--CCEEEEEeCCCCCCeEEEEEEEEcCc------hHHHHHHHHHHHhcCCCeEEEEE
Confidence 557888888887772 23334433221 23344555555533 22344778889999999998764
No 83
>PF11381 DUF3185: Protein of unknown function (DUF3185); InterPro: IPR021521 Some members in this bacterial family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=32.06 E-value=2.1e+02 Score=21.10 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHH
Q 015269 186 GIIIFAAIMATLGFQV---LIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVK 237 (410)
Q Consensus 186 ~~li~sv~m~~~~~~i---l~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~ 237 (410)
+-++.+++++..+.+. +.+.+.+.+++++++ ...|.++-..++.++-
T Consensus 6 ~Llv~GivLl~~G~~~~~S~~s~~s~~~TG~~t~-----~t~~~ligG~va~ivG 55 (59)
T PF11381_consen 6 ALLVGGIVLLYFGYQASDSLGSQVSRAFTGSPTD-----KTIWYLIGGAVAVIVG 55 (59)
T ss_pred hHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCCc-----hhHHHHHhHHHHHHHH
Confidence 4456666666666554 345577788887763 3345554445554443
No 84
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.13 E-value=79 Score=24.54 Aligned_cols=53 Identities=11% Similarity=0.186 Sum_probs=34.7
Q ss_pred ChHHHHHHHHHHHcC-CCccccceEEEeeecCeEEEEEEEEeCC-CCCHHHHHHHHHHHHH
Q 015269 316 PPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIELPE-ELPLKEAHAIGESLQN 374 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~-~~V~~v~~vr~~~~G~~~~Vev~I~v~~-~~~l~eah~I~~~lq~ 374 (410)
.|-.+.+|...+.++ -.|.++ .....+..++..+.+.+|+ +.++. ++.+.++.
T Consensus 11 ~pGiva~vt~~la~~g~nI~~~---~~~~~~~~f~~~~~v~~~~~~~~~~---~L~~~l~~ 65 (88)
T cd04872 11 RVGIVAGVSTKLAELNVNILDI---SQTIMDGYFTMIMIVDISESNLDFA---ELQEELEE 65 (88)
T ss_pred CCCHHHHHHHHHHHcCCCEEec---hhHhhCCccEEEEEEEeCCCCCCHH---HHHHHHHH
Confidence 567889999999998 444444 4444567778888888876 45543 34444444
No 85
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=29.44 E-value=5.4e+02 Score=25.03 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-----ChhhHHhHHHHHhhHHHHHHHH
Q 015269 225 WLYSIMIGATVVKLALWIYCKSSG-----NKIVRAYAKDHYFDVVTNVVGL 270 (410)
Q Consensus 225 ~~i~i~~~a~vv~~~l~~~~r~~~-----s~~l~a~a~d~~~Dv~~n~~~l 270 (410)
+...+..++.++....|...|+.+ ++.-......|..|..++.+|+
T Consensus 145 ~~~~v~~~a~~~t~~~~~~~~~~~~~~~~~~~~~~vv~aH~lDa~sT~vGi 195 (273)
T PF01889_consen 145 VLLIVLGLATIATALVWLLLRRFKVNILTDPLGLLVVFAHLLDASSTFVGI 195 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhccchhHHHHHHHHHhHHHHhhhe
Confidence 334444555556666666666633 2222234456888999988665
No 86
>PF05105 Phage_holin_4: Holin family ; InterPro: IPR006480 This group of sequences describe one of the many mutually dissimilar families of holins, phage proteins that act together with lytic enzymes in bacterial lysis. This family includes, besides phage holins, the protein TcdE/UtxA involved in toxin secretion in Clostridium difficile and related species []. This entry is represented by the Bacteriophage phi-29, Gp14 (holin). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=28.62 E-value=3.4e+02 Score=22.43 Aligned_cols=38 Identities=18% Similarity=0.330 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHH
Q 015269 284 DPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKL 323 (410)
Q Consensus 284 Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I 323 (410)
.|+...++..++..+...++ ||...+ |...|+-..+.+
T Consensus 74 ~~~~~~~~~~~i~~E~~SI~-EN~~~~-G~~iP~~l~~~l 111 (118)
T PF05105_consen 74 LPFRTLVIIFYILNELISIL-ENLAEM-GVPIPKWLKKFL 111 (118)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHh-CCCchHHHHHHH
Confidence 46666777888888877755 999776 765554333333
No 87
>PRK14643 hypothetical protein; Provisional
Probab=28.59 E-value=2.8e+02 Score=24.74 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=35.9
Q ss_pred cccceEEEeeecCeEEEEEEEEe----CCCCCHHHHHHHHHHHHHHhhc
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIEL----PEELPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v----~~~~~l~eah~I~~~lq~~L~~ 378 (410)
..+.++...+.|...++.|.|.= +++++++++..+++.|...|..
T Consensus 24 ~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD~ 72 (164)
T PRK14643 24 LKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKIDQ 72 (164)
T ss_pred CEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhCc
Confidence 45678888888887777888752 2359999999999999999963
No 88
>TIGR00816 tdt C4-dicarboxylate transporter/malic acid transport protein. spanners (TMSs).
Probab=28.58 E-value=5.2e+02 Score=25.27 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=10.9
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 015269 280 YWWIDPAGAILLAVYTITNW 299 (410)
Q Consensus 280 ~~~~Dpi~ailIa~~ii~~~ 299 (410)
.||++.+..++.++++.+.+
T Consensus 100 lw~~~~~l~l~~~~~~~~~~ 119 (320)
T TIGR00816 100 LWYIGAIGQLLFSVIVPFYL 119 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666555555555443
No 89
>PRK14631 hypothetical protein; Provisional
Probab=28.38 E-value=2.7e+02 Score=25.11 Aligned_cols=45 Identities=4% Similarity=0.090 Sum_probs=36.2
Q ss_pred cccceEEEeeecCeEEEEEEEEeC------------------CCCCHHHHHHHHHHHHHHhhc
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIELP------------------EELPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v~------------------~~~~l~eah~I~~~lq~~L~~ 378 (410)
..+.++.....|....+.|.|.-+ ...+++++..+++.|...|..
T Consensus 23 ~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD~ 85 (174)
T PRK14631 23 VDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLDV 85 (174)
T ss_pred CEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhcc
Confidence 566788888888777778877753 359999999999999999963
No 90
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=28.27 E-value=3.3e+02 Score=22.16 Aligned_cols=66 Identities=21% Similarity=0.244 Sum_probs=40.7
Q ss_pred HhhcCCCChHHHHHHHHHHHcC-CCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCce
Q 015269 309 SLVGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVE 383 (410)
Q Consensus 309 ~L~g~s~~~e~~~~I~~~~~~~-~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~ 383 (410)
...|...-.+.++.+...+.+. +. +-.+++.+..-|+ +.++.. +..++.++.+++...++......
T Consensus 50 ~~~g~~~~~~~l~~i~~~l~~~~~~-----~~~~~r~~~~~f~---ii~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 116 (163)
T smart00267 50 DTYGHAVGDELLQEVAQRLSSCLRP-----GDLLARLGGDEFA---LLLPET-SLEEAIALAERILQQLREPIIIH 116 (163)
T ss_pred hccCchhHHHHHHHHHHHHHHhcCC-----CCEEEEecCceEE---EEecCC-CHHHHHHHHHHHHHHHhCccccC
Confidence 3455555566677777777665 32 2346666654443 334444 67788899999999997544433
No 91
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=28.26 E-value=2.7e+02 Score=24.82 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=42.2
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEE
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 387 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~V 387 (410)
.|..+.+|..++.++. .+|+.+-+......-...+.++++.+ .+..+.+.++|+++.+|-.|..
T Consensus 12 ~pGvL~rI~~lf~rrg--~NI~Sl~v~~te~~~~sriti~V~~~------~~~i~qi~kQl~KLidV~~V~~ 75 (161)
T PRK11895 12 EPGVLSRVAGLFSRRG--YNIESLTVGPTEDPGLSRMTIVTSGD------EQVIEQITKQLNKLIDVLKVVD 75 (161)
T ss_pred CCcHHHHHHHHHHhCC--CcEEEEEeeecCCCCEEEEEEEEECC------HHHHHHHHHHHhccccEEEEEe
Confidence 4567889999988874 35566666666532233355555543 3466788899999988876654
No 92
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=28.25 E-value=1e+03 Score=28.00 Aligned_cols=23 Identities=13% Similarity=-0.210 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 015269 114 ERAMKISNYANIVLLACKIFATI 136 (410)
Q Consensus 114 ~~al~~sl~~n~~l~i~k~~a~~ 136 (410)
-+++.++++..+.+.++-..+|+
T Consensus 521 ~~al~~t~l~alP~pl~~~~~g~ 543 (1109)
T PRK10929 521 LRTVFWSILVASPLPVLWAALGY 543 (1109)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 46888888888777776666666
No 93
>PRK00194 hypothetical protein; Validated
Probab=27.87 E-value=1e+02 Score=23.96 Aligned_cols=40 Identities=8% Similarity=0.138 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHcC-CCccccceEEEeeecCeEEEEEEEEeCC
Q 015269 316 PPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIELPE 358 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~-~~V~~v~~vr~~~~G~~~~Vev~I~v~~ 358 (410)
.|..+.+|...+.++ -.|.++ .....++..++.+.+.+++
T Consensus 13 rpGiva~vt~~la~~g~nI~~~---~~~~~~~~~~~~~~v~~~~ 53 (90)
T PRK00194 13 KVGIIAGVSTVLAELNVNILDI---SQTIMDGYFTMIMLVDISE 53 (90)
T ss_pred CCCHHHHHHHHHHHcCCCEEeh---hhHhhCCeeEEEEEEEecC
Confidence 567899999999998 444444 4344567777777777775
No 94
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.81 E-value=4.3e+02 Score=23.37 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=39.7
Q ss_pred cccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~ 378 (410)
..+.++...+.|+...+.+.|.=+..++++++.++++.+...|..
T Consensus 23 ~ELv~ve~~~~~~~~~lrI~id~~g~v~lddC~~vSr~is~~LD~ 67 (153)
T COG0779 23 FELVDVEFVKEGRDSVLRIYIDKEGGVTLDDCADVSRAISALLDV 67 (153)
T ss_pred cEEEEEEEEEcCCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 466788888889989989988888899999999999999999973
No 95
>PRK04998 hypothetical protein; Provisional
Probab=26.84 E-value=3.2e+02 Score=21.53 Aligned_cols=62 Identities=26% Similarity=0.315 Sum_probs=40.1
Q ss_pred hcCCCChHHHHHHHHHHHcC-CCccccceEEEeee--cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCce
Q 015269 311 VGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAYTF--GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVE 383 (410)
Q Consensus 311 ~g~s~~~e~~~~I~~~~~~~-~~V~~v~~vr~~~~--G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~ 383 (410)
+|. +.+++.+.|..++.++ |+. +.++.+.+ |...-+.+.+.+... +-.+.+-++|.+.|+|.
T Consensus 21 ig~-~~~~~~~~v~~v~~~~~~~~---~~~~~r~S~~GkY~Svtv~v~v~s~-------eq~~~iY~~L~~~~~V~ 85 (88)
T PRK04998 21 MGL-ARPELVDQVVEVVQRHAPGD---YTPTVKPSSKGNYHSVSITITATSI-------EQVETLYEELAKIEGVR 85 (88)
T ss_pred EEe-CcHhHHHHHHHHHHHhCCCC---CCceEccCCCCEEEEEEEEEEECCH-------HHHHHHHHHHhcCCCEE
Confidence 453 4678999999999887 442 23555555 444446666666543 34466777888888875
No 96
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=26.67 E-value=1.1e+03 Score=27.58 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=38.7
Q ss_pred CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEe
Q 015269 346 VLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 390 (410)
Q Consensus 346 ~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd 390 (410)
+.-.+.+++.+|++.+++++.++.+++++.+++.|+|+.++.-+.
T Consensus 566 d~~~i~v~~~~p~gt~l~~t~~~~~~ve~~l~~~~~v~~~~~~~G 610 (1040)
T PRK10503 566 DNGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVG 610 (1040)
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEEEec
Confidence 444568899999999999999999999999988899988876654
No 97
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=26.03 E-value=94 Score=22.11 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=18.9
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 015269 174 KYPIGKLRVQPVGIIIFAAIMATLGFQVL 202 (410)
Q Consensus 174 ~~P~G~~R~E~l~~li~sv~m~~~~~~il 202 (410)
.|-|-|..+. +++++++.+++++|+.++
T Consensus 6 pF~YDy~tLr-igGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 6 PFYYDYETLR-IGGLIFAGVLFILGILII 33 (50)
T ss_dssp GGGGCHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred CCccchhHhh-ccchHHHHHHHHHHHHHH
Confidence 4445555543 577888888888887655
No 98
>PRK11281 hypothetical protein; Provisional
Probab=26.01 E-value=1.1e+03 Score=27.70 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=13.7
Q ss_pred cccccchhhhhhcchhhhhcCC
Q 015269 35 NSVNALRHEFVSKLPEKVLAGI 56 (410)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~ 56 (410)
+|-+++..+++..+|..+...+
T Consensus 459 ~s~~pid~~w~~~~p~~~~~~~ 480 (1113)
T PRK11281 459 NSNKPMDLDWLKAFPQALKDQF 480 (1113)
T ss_pred CCCCCcCHHHHHHHHHHHHHHH
Confidence 3445666667777777665554
No 99
>PRK14641 hypothetical protein; Provisional
Probab=25.59 E-value=3.2e+02 Score=24.64 Aligned_cols=44 Identities=9% Similarity=0.137 Sum_probs=38.0
Q ss_pred cccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIE 377 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~ 377 (410)
..+.++.+...|....+.|.|.-+..++++++-.+++.|...|.
T Consensus 24 ~eLvdve~~~~~~~~~lrV~ID~~~gv~lDdC~~vSr~Is~~LD 67 (173)
T PRK14641 24 VYLVSMTVKGSGKGRKIEVLLDADTGIRIDQCAFFSRRIRERLE 67 (173)
T ss_pred eEEEEEEEEeCCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence 45778888888888888888887778999999999999999996
No 100
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=25.18 E-value=2.5e+02 Score=24.10 Aligned_cols=45 Identities=11% Similarity=0.155 Sum_probs=35.7
Q ss_pred cccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Q 015269 334 KRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 334 ~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~ 378 (410)
..+.++.....|....+.|.|.=+..++++++-.+.+.+...|..
T Consensus 11 ~~l~~v~~~~~~~~~~l~V~id~~~gv~lddc~~~sr~i~~~LD~ 55 (141)
T PF02576_consen 11 LELVDVEVVKEGGNRILRVFIDKDGGVSLDDCEKVSRAISALLDA 55 (141)
T ss_dssp SEEEEEEEEEETTEEEEEEEEE-SS---HHHHHHHHHHHGGGTTT
T ss_pred CEEEEEEEEECCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHHHcc
Confidence 467788999999888888888778889999999999999999975
No 101
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=24.93 E-value=3.6e+02 Score=23.87 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEE
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 387 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~V 387 (410)
.|..+.+|..++.+.. .+++.+-+...+..-...+.++++.+ .+..+.+.++|+++.+|-.|..
T Consensus 11 ~pGvL~rI~~lf~rrg--~NI~Sl~v~~t~~~~~sriti~V~~d------~~~i~qi~kQl~Kli~V~~V~~ 74 (157)
T TIGR00119 11 EPGVLSRVAGLFTRRG--FNIESLTVGPTEDPDLSRMTIVVVGD------DKVLEQITKQLNKLVDVIKVSD 74 (157)
T ss_pred CCcHHHHHHHHHHhCC--ceEEEEEEeecCCCCEEEEEEEEECC------HHHHHHHHHHHhcCccEEEEEe
Confidence 4567889998888874 45666667766632233455555542 3467888999999988876654
No 102
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=24.90 E-value=67 Score=22.56 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=14.6
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 015269 280 YWWIDPAGAILLAVYTITN 298 (410)
Q Consensus 280 ~~~~Dpi~ailIa~~ii~~ 298 (410)
..++||+.|+++++.-.+.
T Consensus 4 sr~lDP~~av~iG~~ayyl 22 (47)
T PF11654_consen 4 SRFLDPLFAVFIGTSAYYL 22 (47)
T ss_pred hhhhhhHHHHHHHHHHHHH
Confidence 5789999999887765443
No 103
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=24.06 E-value=48 Score=23.94 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=25.3
Q ss_pred HhhcCCCChHHHHHHHHHHHcCCCccccce
Q 015269 309 SLVGQSAPPEILQKLTYLVIRHPEVKRIDT 338 (410)
Q Consensus 309 ~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~ 338 (410)
.|.|..++++..+.+..++.+.+++..|++
T Consensus 29 ~L~G~v~s~~~~~~a~~~a~~v~gv~~V~n 58 (64)
T PF04972_consen 29 TLSGEVPSQEQRDAAERLARSVAGVREVVN 58 (64)
T ss_dssp EEEEEESSCHHHHHHHHHHHCC-STSEEEE
T ss_pred EEEeeCcHHHHHHhHHhhhccCCCcCEEEE
Confidence 378888899999999999999999988865
No 104
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.04 E-value=2.6e+02 Score=19.67 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHcCCCccccceEEEeee-cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEE
Q 015269 317 PEILQKLTYLVIRHPEVKRIDTVRAYTF-GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVH 388 (410)
Q Consensus 317 ~e~~~~I~~~~~~~~~V~~v~~vr~~~~-G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vh 388 (410)
+..+.++...+.++. .++.++..... +.... +.+.+++. +..+.+.++|++.++|.++.+|
T Consensus 11 ~g~l~~i~~~l~~~~--~~i~~~~~~~~~~~~~~--~~i~~~~~-------~~~~~~~~~L~~~~~v~~v~~~ 72 (72)
T cd04874 11 PGVLRDLTGVIAEHG--GNITYTQQFIEREGKAR--IYMELEGV-------GDIEELVEELRSLPIVREVEIH 72 (72)
T ss_pred CChHHHHHHHHHhCC--CCEEEEEEeccCCCeEE--EEEEEecc-------ccHHHHHHHHhCCCCeEEEEeC
Confidence 346788888887772 23334443332 22222 33555542 1334777889999999988775
No 105
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=23.99 E-value=4.6e+02 Score=22.47 Aligned_cols=47 Identities=15% Similarity=0.042 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHH---HHhHHHHHHhHHHHHHHHHH
Q 015269 117 MKISNYANIVLLACKIFATIKSGSIAI---AASTLDSLLDLMAGGILWFT 163 (410)
Q Consensus 117 l~~sl~~n~~l~i~k~~a~~~s~S~aL---lAdaldsl~D~~s~~i~l~~ 163 (410)
-.+++++|+++.++-.+++.+..+... ...+..-++-++++++++++
T Consensus 77 ~qls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvA 126 (142)
T PF11712_consen 77 RQLSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVA 126 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 445667888887777666555333333 34445555555555554444
No 106
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.49 E-value=3.2e+02 Score=23.84 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=28.8
Q ss_pred cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeecC
Q 015269 345 GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 393 (410)
Q Consensus 345 G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~ 393 (410)
|..+.|.+.+..+ ..+. ...|.+.++++|+.. +++.+.|.+..++
T Consensus 24 gd~V~VtIt~Ty~-gcpa--~e~L~~~I~~aL~~~-Gv~~V~V~i~~~p 68 (146)
T TIGR02159 24 GGGVVVKFTPTYS-GCPA--LEVIRQDIRDAVRAL-GVEVVEVSTSLDP 68 (146)
T ss_pred CCEEEEEEEeCCC-CCch--HHHHHHHHHHHHHhc-CCCeEEEeEeeCC
Confidence 5554444444333 2443 467889999999876 7888877776543
No 107
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=23.17 E-value=2.8e+02 Score=19.68 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=28.5
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHhhc-C-CCceEEEEEEee
Q 015269 350 VEVDIELPEELPLKEAHAIGESLQNKIEK-L-PEVERAFVHLDY 391 (410)
Q Consensus 350 Vev~I~v~~~~~l~eah~I~~~lq~~L~~-l-~~v~~v~Vhvd~ 391 (410)
+++++. +++.+.++-.++.+.+.+.+.+ + ...+.++|.++.
T Consensus 3 i~i~i~-~~grt~eqK~~l~~~it~~l~~~lg~~~~~v~V~i~e 45 (63)
T TIGR00013 3 VNIYIL-KEGRTDEQKRQLIEGVTEAMAETLGANLESIVVIIDE 45 (63)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 344444 3678899999999999999963 3 234567777764
No 108
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=23.10 E-value=1.9e+02 Score=23.17 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=23.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Q 015269 350 VEVDIELPEELPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 350 Vev~I~v~~~~~l~eah~I~~~lq~~L~~ 378 (410)
+=++|.-.+++++.|.+++.+.+++.+..
T Consensus 39 vLvni~~~~d~~l~ev~~~~~~i~~~~~~ 67 (95)
T PF12327_consen 39 VLVNITGGPDLSLSEVNEAMEIIREKADP 67 (95)
T ss_dssp EEEEEEE-TTS-HHHHHHHHHHHHHHSST
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHHhhc
Confidence 34667788999999999999999999963
No 109
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.12 E-value=6.1e+02 Score=23.15 Aligned_cols=28 Identities=7% Similarity=0.148 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 015269 188 IIFAAIMATLGFQVLIEAVEKLVKDEPP 215 (410)
Q Consensus 188 li~sv~m~~~~~~il~esi~~Li~~~~~ 215 (410)
.+.-..+++.++..+..++..++++...
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~~f~~~~~ 108 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMGFFSPKNS 108 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3334444445566667777888877544
No 110
>cd02411 archeal_30S_S3_KH K homology RNA-binding domain (KH) of the archaeal 30S small ribosomal subunit S3 protein. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=21.72 E-value=2.8e+02 Score=21.57 Aligned_cols=68 Identities=9% Similarity=0.028 Sum_probs=38.5
Q ss_pred HHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEe
Q 015269 322 KLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 390 (410)
Q Consensus 322 ~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd 390 (410)
.|++.+.+.-.-.++..+.+.+.+....|.++..-| ++-+.....-.+.++..|+++.+...+.+.+.
T Consensus 14 ~Ir~fl~~~~~~agIs~IeI~r~~~~i~V~I~t~~p-g~iIGk~G~~I~~l~~~l~k~~~~~~v~I~v~ 81 (85)
T cd02411 14 MIDEYLEKELERAGYGGMEILRTPLGTQITIYAERP-GMVIGRGGKNIRELTEILETKFGLENPQIDVQ 81 (85)
T ss_pred HHHHHHHhhhhhCcccEEEEEEcCCcEEEEEEECCC-CceECCCchhHHHHHHHHHHHhCCCCceEEEE
Confidence 344444433222467788888877778888888544 33333333333666666665555545666654
No 111
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=21.21 E-value=2.6e+02 Score=21.68 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=42.2
Q ss_pred hhcCCCChHHHHHHHHHHHcC-CCccccceEEEee------ecCeEEEEEEEEeCCCCCHHHHHHHHHHHHH
Q 015269 310 LVGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAYT------FGVLYFVEVDIELPEELPLKEAHAIGESLQN 374 (410)
Q Consensus 310 L~g~s~~~e~~~~I~~~~~~~-~~V~~v~~vr~~~------~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~ 374 (410)
++|+....+.+.+|...+.++ -.|.++..+.-|. ..+.+.+++++..++ . +..++...+..
T Consensus 4 vlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~~~-~---~~~~lr~~L~~ 71 (84)
T cd04871 4 LLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQP-A---DLEALRAALLE 71 (84)
T ss_pred EEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeCCC-C---CHHHHHHHHHH
Confidence 578777889999999999998 6677777754332 124677888888655 3 34455555553
No 112
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=20.56 E-value=9.8e+02 Score=24.97 Aligned_cols=82 Identities=10% Similarity=0.074 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHhHHHHHhhH
Q 015269 184 PVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDV 263 (410)
Q Consensus 184 ~l~~li~sv~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~~~s~~l~a~a~d~~~Dv 263 (410)
++--.++-.+|.+..+.+..|==+.++.++-.+. ......+..++-++++-..+|..... +.+..+..+.-.-+|+
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~---rka~lPi~AAlGGmivPAlIY~~~n~-~~~~~~GWgIPmATDI 142 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSF---KKASFPVIAALGGMIAPGLIYFFLNA-DTPSQHGFGIPMATDI 142 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCh---HHHHHHHHHHHhccHHHHHHHhheec-CCCccCccccccHHHH
Confidence 4556667777777777777777777877665421 22233333344444444455544433 4555777777788888
Q ss_pred HHHHHH
Q 015269 264 VTNVVG 269 (410)
Q Consensus 264 ~~n~~~ 269 (410)
.+..++
T Consensus 143 AFAlgv 148 (438)
T PRK14856 143 AFALGV 148 (438)
T ss_pred HHHHHH
Confidence 887743
No 113
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=20.21 E-value=34 Score=33.30 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH
Q 015269 182 VQPVGIIIFAAIMA 195 (410)
Q Consensus 182 ~E~l~~li~sv~m~ 195 (410)
+-|++.++.-++|+
T Consensus 77 LCPLGlLCiilimi 90 (381)
T PF05297_consen 77 LCPLGLLCIILIMI 90 (381)
T ss_dssp --------------
T ss_pred cCcchHHHHHHHHH
Confidence 34565555444443
No 114
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.17 E-value=3.6e+02 Score=19.81 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHcC-CCccccceEEEeeecCeEEEEEEEEeCCC-CCHH
Q 015269 316 PPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIELPEE-LPLK 363 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~-~~V~~v~~vr~~~~G~~~~Vev~I~v~~~-~~l~ 363 (410)
.|-.+.+|.+.+.++ -.|.+++.-. .+.+..+++.+.+.+|+. .+..
T Consensus 9 ~~Giv~~it~~l~~~g~nI~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~ 57 (74)
T cd04875 9 RPGIVAAVSGFLAEHGGNIVESDQFV-DPDSGRFFMRVEFELEGFDLSRE 57 (74)
T ss_pred CCCHHHHHHHHHHHcCCCEEeeeeee-cCCCCeEEEEEEEEeCCCCCCHH
Confidence 456789999999998 4455553332 355667788888888864 5544
Done!