Query 015269
Match_columns 410
No_of_seqs 254 out of 1756
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 09:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1z_P YIIP, cation efflux fam 100.0 1.9E-53 6.6E-58 416.5 15.3 277 112-393 10-290 (306)
2 3h90_A Ferrous-iron efflux pum 100.0 1.4E-51 4.8E-56 399.2 16.7 275 114-394 3-282 (283)
3 3byp_A CZRB protein; membrane 99.5 4.5E-14 1.5E-18 113.5 10.7 83 309-392 1-86 (94)
4 2zzt_A Putative uncharacterize 99.5 2E-13 7E-18 112.5 10.0 84 311-394 1-87 (107)
5 3h90_A Ferrous-iron efflux pum 97.3 0.00013 4.5E-09 69.6 3.7 93 115-215 112-204 (283)
6 3j1z_P YIIP, cation efflux fam 97.2 0.00015 5.2E-09 70.0 3.9 93 115-215 121-213 (306)
7 3cq1_A Putative uncharacterize 82.5 5.5 0.00019 31.3 8.0 76 319-398 7-90 (103)
8 1uwd_A Hypothetical protein TM 73.7 12 0.00042 29.2 7.6 47 350-398 44-91 (103)
9 3lno_A Putative uncharacterize 72.2 14 0.00047 29.3 7.5 77 319-398 9-94 (108)
10 2dbb_A Putative HTH-type trans 53.6 47 0.0016 27.2 7.9 66 314-390 76-142 (151)
11 2cvi_A 75AA long hypothetical 49.2 32 0.0011 25.2 5.5 67 319-397 14-81 (83)
12 1zpv_A ACT domain protein; str 48.1 52 0.0018 24.2 6.7 69 316-393 15-83 (91)
13 1ib8_A Conserved protein SP14. 47.7 53 0.0018 28.0 7.3 57 321-377 12-69 (164)
14 2ko1_A CTR148A, GTP pyrophosph 40.5 1E+02 0.0034 22.2 9.5 68 316-392 15-82 (88)
15 2kjw_A TS9, 30S ribosomal prot 40.0 99 0.0034 23.9 7.1 67 309-378 8-74 (96)
16 3zzp_A TS9, ribosomal protein 39.2 87 0.003 23.1 6.4 66 310-378 9-74 (77)
17 2cg4_A Regulatory protein ASNC 38.6 66 0.0022 26.3 6.4 62 318-391 80-142 (152)
18 2jsx_A Protein NAPD; TAT, proo 37.7 62 0.0021 25.0 5.6 65 315-392 14-79 (95)
19 3gxs_A Phenylacetate-coenzyme 36.0 1.4E+02 0.0049 22.7 8.6 56 321-377 17-75 (109)
20 1mli_A Muconolactone isomerase 33.2 1.7E+02 0.0058 22.7 7.6 23 348-370 3-25 (96)
21 3i4p_A Transcriptional regulat 31.9 1.9E+02 0.0065 23.9 8.3 63 317-392 76-139 (162)
22 2cyy_A Putative HTH-type trans 31.8 1.4E+02 0.0049 24.2 7.4 66 314-392 74-140 (151)
23 2pn6_A ST1022, 150AA long hypo 30.9 1.5E+02 0.0053 23.8 7.5 64 317-392 75-139 (150)
24 3lax_A Phenylacetate-coenzyme 30.7 1.7E+02 0.006 22.1 9.9 58 321-378 17-76 (109)
25 2jp3_A FXYD domain-containing 30.2 65 0.0022 23.3 4.1 30 174-204 9-38 (67)
26 3ne5_A Cation efflux system pr 29.6 5.9E+02 0.02 27.8 18.5 42 350-391 577-618 (1054)
27 2r4f_A 3-hydroxy-3-methylgluta 29.4 2.4E+02 0.0083 28.0 9.6 83 317-399 178-261 (441)
28 2zxe_G FXYD10, phospholemman-l 29.3 56 0.0019 24.1 3.7 30 173-203 10-39 (74)
29 1rwu_A Hypothetical UPF0250 pr 28.2 1.8E+02 0.006 23.0 6.9 66 311-385 42-108 (109)
30 2f1f_A Acetolactate synthase i 26.2 1.9E+02 0.0066 24.4 7.3 64 316-387 13-76 (164)
31 2zbc_A 83AA long hypothetical 25.5 1.1E+02 0.0037 21.9 5.0 63 317-391 12-75 (83)
32 3eb7_A Insecticidal delta-endo 24.8 1.9E+02 0.0065 29.6 8.4 69 261-330 4-78 (589)
33 2i52_A Hypothetical protein; s 24.3 60 0.002 26.3 3.4 30 363-393 41-70 (121)
34 2e1c_A Putative HTH-type trans 24.1 1.8E+02 0.0063 24.4 6.9 66 314-392 94-160 (171)
35 2jo1_A Phospholemman; FXYD1, N 22.1 79 0.0027 23.1 3.3 30 174-204 8-37 (72)
36 1i1g_A Transcriptional regulat 22.0 1.6E+02 0.0054 23.4 5.8 64 315-390 72-136 (141)
37 3abf_A 4-oxalocrotonate tautom 21.0 1.1E+02 0.0038 20.6 4.0 41 352-392 4-46 (64)
38 3ce8_A Putative PII-like nitro 20.9 2.2E+02 0.0074 22.9 6.2 70 314-389 29-112 (120)
39 2ogf_A Hypothetical protein MJ 20.7 80 0.0027 25.6 3.4 28 363-390 46-73 (122)
40 2p5v_A Transcriptional regulat 20.6 1.9E+02 0.0065 23.7 6.2 62 318-391 83-145 (162)
No 1
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=100.00 E-value=1.9e-53 Score=416.54 Aligned_cols=277 Identities=22% Similarity=0.266 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHH
Q 015269 112 QHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFA 191 (410)
Q Consensus 112 ~~~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~s 191 (410)
.-|++.++++++|++++++|+++|+.|||+||+||++||+.|+++.++++++.+.++||++.+|||||+|+|++++++.|
T Consensus 10 ~vr~a~~~si~~n~~l~~~k~~ag~~sgS~ALlaDa~hsl~D~~s~~i~l~~~~~s~k~~d~~~pyG~~R~E~l~al~~~ 89 (306)
T 3j1z_P 10 WVKLASRASVATALTLITIKLLAWLYSGSASMLASLTDSFADTLASIINFIAIRYAIVPADHDHRYGHGKAEPLAALAQS 89 (306)
T ss_dssp CSSTTHHHHHHHHHHHTHHHHHTCTTSSSSCCCTHHHHTTHHHHHHHHHHHHHHHHTSCCCCTTSSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCchhhHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHh----CChhhHHhHHHHHhhHHHHH
Q 015269 192 AIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKSS----GNKIVRAYAKDHYFDVVTNV 267 (410)
Q Consensus 192 v~m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~~----~s~~l~a~a~d~~~Dv~~n~ 267 (410)
++|+++++++++|+++++++|++.+ ...++++++++++++++++++++++. +|..++|.++|+++|+++|+
T Consensus 90 ~~l~~~~~~i~~eai~~l~~p~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~ 164 (306)
T 3j1z_P 90 AFIMGSAFLLLFYGGERLLNPSPVE-----NATLGVVVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNA 164 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCCGG-----GTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHhhhheecCCCcc-----ccccchhhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhh
Confidence 9999999999999999999988653 23345677888899999988888653 47889999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCccccceEEEeeecCe
Q 015269 268 VGLVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVL 347 (410)
Q Consensus 268 ~~lv~~~l~~~~~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~ 347 (410)
+++++.++..+.|||+||++++++++++++.|+++++|+...|+|+++|++..++|++.+.++|+|.+||++|+|+.|++
T Consensus 165 ~vli~~~~~~~g~~~~Dpi~ai~Ia~~I~~~~~~l~~~s~~~Ll~~~~~~~~~~~I~~~i~~~~~V~~vh~l~~~~~G~~ 244 (306)
T 3j1z_P 165 AVLLALVLSQYGWWWADGLFAVLIACYIGQQAFDLGYRSIQALLDRELDEDTRQRIKLIAKEDPRVLGLHDLRTRQAGKT 244 (306)
T ss_dssp TCCCTTSSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSTTBCCCCCBCCEEETTE
T ss_pred HHHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhcCCCcceeeeEEEEEECCc
Confidence 87776655555689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeecC
Q 015269 348 YFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 393 (410)
Q Consensus 348 ~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~ 393 (410)
+++++||++|+++|++|+|+|++++|++|++.+++.+++||+||..
T Consensus 245 ~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~~~v~IhveP~~ 290 (306)
T 3j1z_P 245 VFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFEDAEVIIHQDPVQ 290 (306)
T ss_dssp EEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTTCEEEECCEETT
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 9999999999999999999999999999987667889999999953
No 2
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=100.00 E-value=1.4e-51 Score=399.23 Aligned_cols=275 Identities=21% Similarity=0.231 Sum_probs=252.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHH
Q 015269 114 ERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAI 193 (410)
Q Consensus 114 ~~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~ 193 (410)
+|++++++++|++++++|+++|+.+||.||+||++||+.|+++.++.+++.+.++||++++|||||+|+|++++++.|++
T Consensus 3 ~r~~~~~~~~n~~l~~~k~~~g~~t~S~allaDa~hsl~D~~~~~~~l~~~~~s~~~~d~~~pyG~~r~E~l~~l~~~~~ 82 (283)
T 3h90_A 3 SRAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMF 82 (283)
T ss_dssp CTHHHHHHHHHHTTHHHHHHSSCSSSSSCCCSTTTHHHHHHHHHHHHHHHHHHHTCCCCSSCSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH----hCChhhHHhHHHHHhhHHHHHHH
Q 015269 194 MATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS----SGNKIVRAYAKDHYFDVVTNVVG 269 (410)
Q Consensus 194 m~~~~~~il~esi~~Li~~~~~~~~~~~~~~~~i~i~~~a~vv~~~l~~~~r~----~~s~~l~a~a~d~~~Dv~~n~~~ 269 (410)
++++++++++||++++++|++.+. ..++++++++++++|.++++++++ .+|+.++|.++|+++|+++++++
T Consensus 83 l~~~~~~i~~eai~~l~~~~~~~~-----~~~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~v 157 (283)
T 3h90_A 83 ISGSALFLFLTGIQHLISPTPMTD-----PGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAI 157 (283)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCCCC-----CCCCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCS
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876532 224567888999999999888865 36889999999999999999977
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcCCCccccceEEEeeecCeEE
Q 015269 270 LVAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYF 349 (410)
Q Consensus 270 lv~~~l~~~~~~~~Dpi~ailIa~~ii~~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~ 349 (410)
+++.++..+.|+|+||++++++++++++.++++++++...|+|.++|++..++|++.+.++|+|.++|++|+|+.|++++
T Consensus 158 li~~~~~~~g~~~~D~i~~i~ia~~i~~~~~~l~~~s~~~Ll~~~~~~~~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~ 237 (283)
T 3h90_A 158 LLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRF 237 (283)
T ss_dssp CSSSCSCSTTSCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSSSCSEEEEEEEEEETTEEE
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCcccceeeEEEEECCcEE
Confidence 66654432237899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHhh-cCCCceEEEEEEeecCC
Q 015269 350 VEVDIELPEELPLKEAHAIGESLQNKIE-KLPEVERAFVHLDYECD 394 (410)
Q Consensus 350 Vev~I~v~~~~~l~eah~I~~~lq~~L~-~l~~v~~v~Vhvd~~~~ 394 (410)
+++||++|+++|++|+|++++++|++|+ +.|. .+++||+||+.+
T Consensus 238 v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~-~~v~ih~ep~~~ 282 (283)
T 3h90_A 238 IQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG-SDVIIHQDPCSV 282 (283)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT-CEEEEEEECSCC
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC-CeEEEEeccCCC
Confidence 9999999999999999999999999997 5665 789999999754
No 3
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=99.53 E-value=4.5e-14 Score=113.45 Aligned_cols=83 Identities=19% Similarity=0.444 Sum_probs=74.1
Q ss_pred HhhcCCCChHHHHHHHHHHHcC--CCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhh-cCCCceEE
Q 015269 309 SLVGQSAPPEILQKLTYLVIRH--PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIE-KLPEVERA 385 (410)
Q Consensus 309 ~L~g~s~~~e~~~~I~~~~~~~--~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~-~l~~v~~v 385 (410)
.|+|.+++++..++|++.+.++ |+|.+||++|+|+.|+.+++++||++++++++.++|++.+++++.|+ ++|.+ ++
T Consensus 1 ~Lld~~~~~~~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~~-~v 79 (94)
T 3byp_A 1 GLMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPGL-QA 79 (94)
T ss_dssp -----CCCHHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTTE-EE
T ss_pred CCcCCCCCHHHHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCCC-EE
Confidence 4789999999999999999999 99999999999999999999999999999999999999999999996 57665 99
Q ss_pred EEEEeec
Q 015269 386 FVHLDYE 392 (410)
Q Consensus 386 ~Vhvd~~ 392 (410)
+||+||+
T Consensus 80 tIh~ep~ 86 (94)
T 3byp_A 80 TIHVEPE 86 (94)
T ss_dssp EEEEEEC
T ss_pred EEEeCCC
Confidence 9999985
No 4
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=99.46 E-value=2e-13 Score=112.49 Aligned_cols=84 Identities=21% Similarity=0.424 Sum_probs=75.3
Q ss_pred hcCCCChH--HHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhh-cCCCceEEEE
Q 015269 311 VGQSAPPE--ILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIE-KLPEVERAFV 387 (410)
Q Consensus 311 ~g~s~~~e--~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~-~l~~v~~v~V 387 (410)
||.+++++ ..++|++.+.++|+|.+|+++|+|+.|+.+++++||++++++|+.++|+|++++++.|+ ++|.+.+++|
T Consensus 1 md~~~~~~~~~~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~i~~vtI 80 (107)
T 2zzt_A 1 MDGMKRTELDMYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDDIEDVTI 80 (107)
T ss_dssp ---CCHHHHHHHHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred CCCCCCccHHHHHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 46678889 99999999999999999999999999999999999999999999999999999999996 6777999999
Q ss_pred EEeecCC
Q 015269 388 HLDYECD 394 (410)
Q Consensus 388 hvd~~~~ 394 (410)
|+||...
T Consensus 81 hvEp~~~ 87 (107)
T 2zzt_A 81 HVEPLGN 87 (107)
T ss_dssp EEEETTC
T ss_pred EEecCCC
Confidence 9999653
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=97.27 E-value=0.00013 Score=69.57 Aligned_cols=93 Identities=17% Similarity=0.176 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHH
Q 015269 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIM 194 (410)
Q Consensus 115 ~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m 194 (410)
....+++++|.+++....-.+-..+|.++.|++.|...|.++++.++.+.... -+|+..++|+++++.++++
T Consensus 112 ~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli~~~~~--------~~g~~~~D~i~~i~ia~~i 183 (283)
T 3h90_A 112 IVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLS--------WYGWHRADALFALGIGIYI 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCSSSCSC--------STTSCCSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhCchHHHHHHHHHHHHHH
Confidence 56778899999999998888889999999999999999999998766543221 2477789999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCC
Q 015269 195 ATLGFQVLIEAVEKLVKDEPP 215 (410)
Q Consensus 195 ~~~~~~il~esi~~Li~~~~~ 215 (410)
+..++.++.+++..|++..++
T Consensus 184 ~~~~~~l~~~s~~~Ll~~~~~ 204 (283)
T 3h90_A 184 LYSALRMGYEAVQSLLDRALP 204 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999987765
No 6
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=97.25 E-value=0.00015 Score=70.02 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhHHHHHHhHHHHHHHHHHHHHhcCCCCCCCCccchhHHHHHHHHHHHHH
Q 015269 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIM 194 (410)
Q Consensus 115 ~al~~sl~~n~~l~i~k~~a~~~s~S~aLlAdaldsl~D~~s~~i~l~~~~~~~~~~~~~~P~G~~R~E~l~~li~sv~m 194 (410)
.+..++++.|+.+.......+-..+|.++.|++.|...|+++++.++++..... ||+.-++|+++++.++++
T Consensus 121 ~v~~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vli~~~~~~--------~g~~~~Dpi~ai~Ia~~I 192 (306)
T 3j1z_P 121 VVSVVAIVLTLALVLLQKRALAATNSTVVEADSLHYKSDLFLNAAVLLALVLSQ--------YGWWWADGLFAVLIACYI 192 (306)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTTCCTTCCCTTSSCC--------SSSCCCHHHHHHHHHHHH
T ss_pred hhhhhHhhhhHHHHHHHHHhccccCCHHHHHHHHhhcchhhhhhHHHHHHHHHH--------hCcchhhhHHHHHHHHHH
Confidence 466778888999988888888899999999999999999999987766543322 577789999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCC
Q 015269 195 ATLGFQVLIEAVEKLVKDEPP 215 (410)
Q Consensus 195 ~~~~~~il~esi~~Li~~~~~ 215 (410)
+..++.++.+++..|++..++
T Consensus 193 ~~~~~~l~~~s~~~Ll~~~~~ 213 (306)
T 3j1z_P 193 GQQAFDLGYRSIQALLDRELD 213 (306)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHhCcccc
Confidence 999999999999999987765
No 7
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=82.50 E-value=5.5 Score=31.31 Aligned_cols=76 Identities=21% Similarity=0.291 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcC--CC----ccccceEEEeee-cCeEEEEEEEEeC-CCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEe
Q 015269 319 ILQKLTYLVIRH--PE----VKRIDTVRAYTF-GVLYFVEVDIELP-EELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 390 (410)
Q Consensus 319 ~~~~I~~~~~~~--~~----V~~v~~vr~~~~-G~~~~Vev~I~v~-~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd 390 (410)
..++|.+.+.++ |+ +.+..-++--.. |. .|.+.+.++ +.++. ...+.+.++++|+++|+|..+.|++.
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~~--~V~v~l~lt~~~cp~--~~~l~~~i~~al~~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPP--RAYVRMTLTTPGCPL--HDSLGEAVRQALSRLPGVEEVEVEVT 82 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEETT--EEEEEECCSSSSCCS--SCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEECC--EEEEEEEECCCCCcH--HHHHHHHHHHHHHhCCCceeEEEEEe
Confidence 445677777775 43 222233333333 34 344555554 34655 57789999999999999999999987
Q ss_pred ecCCCCCc
Q 015269 391 YECDHKPE 398 (410)
Q Consensus 391 ~~~~~~p~ 398 (410)
.+..=.|+
T Consensus 83 ~~p~W~~~ 90 (103)
T 3cq1_A 83 FEPPWTLA 90 (103)
T ss_dssp CSSCCCGG
T ss_pred cCCCCChH
Confidence 66544443
No 8
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=73.74 E-value=12 Score=29.15 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=34.0
Q ss_pred EEEEEEeC-CCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeecCCCCCc
Q 015269 350 VEVDIELP-EELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPE 398 (410)
Q Consensus 350 Vev~I~v~-~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~~~~p~ 398 (410)
|.+.+.++ +.++. ...+.+.++++|+++|+|..+.|++..+..=.|+
T Consensus 44 V~v~l~lt~~~cp~--~~~l~~~i~~al~~l~gv~~v~V~l~~~p~W~~~ 91 (103)
T 1uwd_A 44 VKVLMTMTTPMCPL--AGMILSDAEEAIKKIEGVNNVEVELTFDPPWTPE 91 (103)
T ss_dssp EEEEECCSSSCCSS--HHHHHHHHHHHHHTSSSCCEEEEEECCSSCCCGG
T ss_pred EEEEEEECCCCCcH--HHHHHHHHHHHHHhCCCcceEEEEEecCCCCChH
Confidence 44445543 34664 5789999999999999999999998766543343
No 9
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=72.19 E-value=14 Score=29.30 Aligned_cols=77 Identities=19% Similarity=0.175 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcC--CCc-ccc---ceEEEeee-c-CeEEEEEEEEeCCCCCHHHHHHHHHHHHHHh-hcCCCceEEEEEE
Q 015269 319 ILQKLTYLVIRH--PEV-KRI---DTVRAYTF-G-VLYFVEVDIELPEELPLKEAHAIGESLQNKI-EKLPEVERAFVHL 389 (410)
Q Consensus 319 ~~~~I~~~~~~~--~~V-~~v---~~vr~~~~-G-~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L-~~l~~v~~v~Vhv 389 (410)
..++|...+.++ |++ .++ .-++--.. | ....|++.+.. +.++. ...+.+.++++| +++|++..|.|++
T Consensus 9 ~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~~~~V~V~ltlt~-p~cp~--~~~i~~~i~~al~~~l~Gv~~V~V~l 85 (108)
T 3lno_A 9 FENKLYANLEAVIDPELGVDIVNLGLVYDVTADENNNAVITMTMTS-IGCPM--AGQIVSDVKKVLSTNVPEVNEIEVNV 85 (108)
T ss_dssp HHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECTTCCEEEEECCSC-TTCTT--HHHHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred hHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECCCCeEEEEEEECC-CCCcH--HHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 346677777766 442 122 22332233 3 33444433333 34665 468999999999 8999999999999
Q ss_pred eecCCCCCc
Q 015269 390 DYECDHKPE 398 (410)
Q Consensus 390 d~~~~~~p~ 398 (410)
..++.=.|+
T Consensus 86 ~~~p~W~~~ 94 (108)
T 3lno_A 86 VWNPPWSKE 94 (108)
T ss_dssp CCSSCCCGG
T ss_pred EecCCCChH
Confidence 876544443
No 10
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=53.65 E-value=47 Score=27.18 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEe
Q 015269 314 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 390 (410)
Q Consensus 314 s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd 390 (410)
..++...+.+.+.+.++|+|..++.+ .|+ ++++.+. ++++ ..++.+-+.+.|.++|+|.++..++-
T Consensus 76 ~~~~~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~--~~~d-----~~~l~~~~~~~l~~~~gV~~~~t~iv 142 (151)
T 2dbb_A 76 SKVPSDADKVISEISDIEYVKSVEKG----VGRYNIIVRLL--LPKD-----IKDAENLISEFLQRIKNAENVEVILI 142 (151)
T ss_dssp ESSHHHHHHHHHHHTTCTTEEEEEEE----ESSCSEEEEEE--EESS-----HHHHHHHHHHHHHTCCSEEEEEEEEE
T ss_pred EeCCCCHHHHHHHHHcCCCeEEEeEe----cCCCCEEEEEE--EcCC-----HHHHHHHHHHHhhcCCCeeEEEEEEE
Confidence 46777778899999999988777644 566 5555544 4222 23444555577888999988766654
No 11
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=49.22 E-value=32 Score=25.21 Aligned_cols=67 Identities=22% Similarity=0.310 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeecCCCCC
Q 015269 319 ILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKP 397 (410)
Q Consensus 319 ~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~~~~p 397 (410)
..+++.+.+.+.|+|..++.+ +|+ .+.+.+ .++. ..++.+-+.++|.++|+|.++.-++-.+..|.-
T Consensus 14 ~~~~~~~~l~~~peV~e~~~v----tG~~D~ll~v--~~~d------~~~l~~~i~~~l~~~~gV~~~~T~ivl~~~~~~ 81 (83)
T 2cvi_A 14 KEREVMEKLLAMPEVKEAYVV----YGEYDLIVKV--ETDT------LKDLDQFITEKIRKMPEIQMTSTMIAILEHHHH 81 (83)
T ss_dssp CHHHHHHHHHTSTTEEEEEEC----BSSCSEEEEE--EESS------HHHHHHHHHTTGGGCTTEEEEEEEEEEEETTTT
T ss_pred CHHHHHHHHhCCCCeeEEEEE----cccCCEEEEE--EECC------HHHHHHHHHHHhccCCCEeEEEEEEEEehhccc
Confidence 357888888899987766332 355 555544 4422 234445555678899999998888877655543
No 12
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=48.08 E-value=52 Score=24.20 Aligned_cols=69 Identities=7% Similarity=0.092 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeecC
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYEC 393 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~ 393 (410)
.|-.+.+|...+.++. .+|.++.....+....+.+.+.+++...+ .++.+.+++.-+++ + +.+++.++.
T Consensus 15 rpGila~vt~~la~~~--~NI~~i~~~~~~~~~~~~i~v~~~~~~~l---~~l~~~L~~~~~~~-~---~~~~~~~~~ 83 (91)
T 1zpv_A 15 KSGIVAGVSGKIAELG--LNIDDISQTVLDEYFTMMAVVSSDEKQDF---TYLRNEFEAFGQTL-N---VKINIQSAA 83 (91)
T ss_dssp CTTHHHHHHHHHHHTT--CEEEEEEEEEETTEEEEEEEEEESSCCCH---HHHHHHHHHHHHHH-T---EEEEEEEGG
T ss_pred CCCHHHHHHHHHHHcC--CCEEEEEeEEEcCEEEEEEEEEeCCCCCH---HHHHHHHHHHHHHc-C---CEEEEeeHH
Confidence 4567889999998883 35555555555566678888888764433 44555555433332 2 556665543
No 13
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=47.73 E-value=53 Score=28.01 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=44.1
Q ss_pred HHHHHHHHcC-CCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhh
Q 015269 321 QKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIE 377 (410)
Q Consensus 321 ~~I~~~~~~~-~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~ 377 (410)
++|+.++... ..=..+.++...+.|....+.|.|.-+..++++++.++++.+...|.
T Consensus 12 ~~v~~li~p~~~~g~eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD 69 (164)
T 1ib8_A 12 ELVREVVEPVIEAPFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLD 69 (164)
T ss_dssp HHHHHHHHHHHCSSSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 3444444433 12356778888888998888998888888999999999999999997
No 14
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=40.51 E-value=1e+02 Score=22.19 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeec
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 392 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~ 392 (410)
.|-.+.+|...+.+.. .+|.++.....++...+.+.+.++.. +-.+++.++|+++++|.++...-..+
T Consensus 15 r~G~L~~I~~~la~~~--inI~~i~~~~~~~~~~~~i~v~~~~~-------~~l~~l~~~L~~~~~V~~v~~~~~~~ 82 (88)
T 2ko1_A 15 KNGMTNQITGVISKFD--TNIRTIVLNAKDGIFTCNLMIFVKNT-------DKLTTLMDKLRKVQGVFTVERLSNLE 82 (88)
T ss_dssp CTTHHHHHHHHHTTSS--SCEEEEEEEECSSEEEEEEEEEESSH-------HHHHHHHHHHTTCTTEEEEEEECSCC
T ss_pred CCcHHHHHHHHHHHCC--CCeEEEEEEEcCCEEEEEEEEEECCH-------HHHHHHHHHHhcCCCceEEEEecccc
Confidence 3457888888888763 45666666655554445555555432 12357778899999998876553333
No 15
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=39.95 E-value=99 Score=23.92 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=54.4
Q ss_pred HhhcCCCChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Q 015269 309 SLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 309 ~L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~ 378 (410)
.++.-.+|++..+.+.+.+.=.+.|..+-.+++-. ... =|+-+.++|+++-++...+.++++..|++
T Consensus 8 ~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~--Mr~-YE~m~Il~P~l~ee~~~~~ve~~~~iI~~ 74 (96)
T 2kjw_A 8 LWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTT--PGR-YEVNIVLNPNLDQSQLALEKEIIQRALEN 74 (96)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSS--SSC-EEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecChhHHHHHHHHhccchhhhhhhheehhh--hhh-hheeeeeCCCCCHHHHHHHHHHHHHHHHh
Confidence 35667889999999999987778888888888753 122 36777899999999999999999999975
No 16
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=39.21 E-value=87 Score=23.14 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=50.7
Q ss_pred hhcCCCChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc
Q 015269 310 LVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 310 L~g~s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~ 378 (410)
|+.-.++++.++.+.+.+.-.+.|...-.+| .-.++.+ |+-+.++|+++-++.....++++..|++
T Consensus 9 l~~~~a~~~~i~Eler~~rine~VlR~l~vr--~d~~r~Y-E~m~Il~P~l~ee~~~~~vek~~~~i~~ 74 (77)
T 3zzp_A 9 WYQVEMPEDRVNDLARELRIRDNVRRVMVVA--STTPGRY-EVNIVLNPNLDQSQLQNEKEIIQRALEN 74 (77)
T ss_dssp EEEEECCHHHHHHHHHHHHTSTTEEEEEEEE--CSSTTEE-EEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHhHHHHHHHHhCCCHHHHHHHHHh--ccCCCce-EEEEEECCCCCHHHHHHHHHHHHHHHHh
Confidence 4555679999999999998888877654444 3333433 7778889999999999999999988864
No 17
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=38.58 E-value=66 Score=26.34 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEee
Q 015269 318 EILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 391 (410)
Q Consensus 318 e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~ 391 (410)
...+++.+.+.++|+|..++.+ .|+ ++++.+.. +. ..++.+-+.+.|.++|+|.+...++--
T Consensus 80 ~~~~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~--~d------~~~l~~~l~~~l~~~~gV~~~~t~ivl 142 (152)
T 2cg4_A 80 KDYPSALAKLESLDEVTEAYYT----TGHYSIFIKVMC--RS------IDALQHVLINKIQTIDEIQSTETLIVL 142 (152)
T ss_dssp GGHHHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEE--SC------HHHHHHHHHHTTTTSTTEEEEEEEECS
T ss_pred CCHHHHHHHHhCCcCeEEEEEE----ecccCEEEEEEE--CC------HHHHHHHHHHHhhcCCCeeEEEEEEEE
Confidence 3578888999999988777644 565 56655444 22 234545566778889999987776643
No 18
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=37.68 E-value=62 Score=24.96 Aligned_cols=65 Identities=9% Similarity=0.135 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHHcCCCccccceEEEeee-cCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeec
Q 015269 315 APPEILQKLTYLVIRHPEVKRIDTVRAYTF-GVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 392 (410)
Q Consensus 315 ~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~-G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~ 392 (410)
+.|+..+.+...+.+.|++ .+ +.... ..++.| .++-+ ...++.+.+ ++|+++|+|.++.....+.
T Consensus 14 ~~p~~~~~V~~~L~~ipgv-Ei---~~~~~~~GkiVV--~iEa~------~~~~l~~~i-~~I~~i~GVlst~lvy~~~ 79 (95)
T 2jsx_A 14 AKSERISDISTQLNAFPGC-EV---AVSDAPSGQLIV--VVEAE------DSETLIQTI-ESVRNVEGVLAVSLVYHQQ 79 (95)
T ss_dssp ECTTSHHHHHHHHTTSTTE-EE---EEEETTTTEEEE--EEEES------SHHHHHHHH-HHHTTSTTEEEEEESSCCC
T ss_pred ECCCCHHHHHHHHHCCCCe-EE---EEecCCCCCEEE--EEEeC------CHHHHHHHH-HHHhcCCCccEEeEEEEEe
Confidence 3567788899999888876 33 22111 113332 23322 245677777 8999999999988876653
No 19
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=36.00 E-value=1.4e+02 Score=22.73 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCC---HHHHHHHHHHHHHHhh
Q 015269 321 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELP---LKEAHAIGESLQNKIE 377 (410)
Q Consensus 321 ~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~---l~eah~I~~~lq~~L~ 377 (410)
+.|+..+.++|+|.....+-+.+-+..=.+.+.+++ ++.. ..+..++.+.+++.+.
T Consensus 17 ~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~ 75 (109)
T 3gxs_A 17 IQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLK 75 (109)
T ss_dssp HHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHH
Confidence 567778888999876555555555443335555666 4332 3456678888888885
No 20
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=33.21 E-value=1.7e+02 Score=22.68 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=16.1
Q ss_pred EEEEEEEEeCCCCCHHHHHHHHH
Q 015269 348 YFVEVDIELPEELPLKEAHAIGE 370 (410)
Q Consensus 348 ~~Vev~I~v~~~~~l~eah~I~~ 370 (410)
+.|++++.+|++++.+++.++..
T Consensus 3 FlV~m~V~~P~~~~~~~~~~~~a 25 (96)
T 1mli_A 3 FHVKMTVKLPVDMDPAKATQLKA 25 (96)
T ss_pred EEEEEEeeCCCCCCHHHHHHHHH
Confidence 45777777777777777666543
No 21
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=31.86 E-value=1.9e+02 Score=23.88 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeec
Q 015269 317 PEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 392 (410)
Q Consensus 317 ~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~ 392 (410)
++..+.+.+.+.++|+|..++. ..|+ ++.+.+.. ++ . .++.+-+.+.+.++| |.++..++--.
T Consensus 76 ~~~~~~~~~~l~~~peV~~~~~----vtG~~D~~l~v~~---~d--~---~~l~~~l~~~l~~~~-V~~~~T~ivl~ 139 (162)
T 3i4p_A 76 IEWLKRFSEVVSEFPEVVEFYR----MSGDVDYLLRVVV---PD--I---AAYDAFYKRMIAKIE-IRDVSSAFAME 139 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEE----CCSSCSEEEEEEE---SS--H---HHHHHHHHHHHHHCC-CSEEEEEECSC
T ss_pred hHHHHHHHHHHhcCCCEEEeee----cCCCCCEEEEEEE---CC--H---HHHHHHHHHHhhcCC-eeEEEEEEEEE
Confidence 3578889999999998876654 2465 56665544 22 2 334455566677788 98887777654
No 22
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=31.76 E-value=1.4e+02 Score=24.17 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=44.5
Q ss_pred CCChHHHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeec
Q 015269 314 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 392 (410)
Q Consensus 314 s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~ 392 (410)
..+++..+.+.+.+.+.|+|..++.+ .|+ ++++.++. +. . .++.+-+ +.|.++|+|.+...++--.
T Consensus 74 ~~~~~~~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~--~d---~---~~l~~~~-~~l~~~~gV~~~~t~ivl~ 140 (151)
T 2cyy_A 74 KVKAGKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRT--KN---S---EELNNFL-DLIGSIPGVEGTHTMIVLK 140 (151)
T ss_dssp EECTTCHHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEE--SS---H---HHHHHHH-HHHHTSTTEEEEEEEECCC
T ss_pred EECcccHHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEE--CC---H---HHHHHHH-HHHhCCCCEeEEEEEEEEE
Confidence 34566778999999999988776542 365 56655444 22 2 3344445 7788899999888777654
No 23
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=30.86 E-value=1.5e+02 Score=23.83 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeec
Q 015269 317 PEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 392 (410)
Q Consensus 317 ~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~ 392 (410)
++..+++.+.+.+.|+|..++. ..|+ ++++.+. .+. ..++.+-+.++|.++|+|.+...++--.
T Consensus 75 ~~~~~~~~~~l~~~p~V~~~~~----~tG~~d~~~~v~--~~d------~~~l~~~l~~~l~~~~gV~~~~t~ivl~ 139 (150)
T 2pn6_A 75 KNYHVELGNKLAQIPGVWGVYF----VLGDNDFIVMAR--YKT------REEFMEKFLERVMSIPEVERTSTQVVVK 139 (150)
T ss_dssp TTHHHHHHHHHHTSTTEEEEEE----CSSSCSEEEEEE--ESS------HHHHHHHTHHHHTTCTTEEEEEEEECSC
T ss_pred hhHHHHHHHHHhcCchhhhhhh----hcCcCCEEEEEE--ECC------HHHHHHHHHHHhccCCCeeEEEEEEEEE
Confidence 6778899999999998866653 2365 5555443 322 3445555667888899999887777654
No 24
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=30.73 E-value=1.7e+02 Score=22.07 Aligned_cols=58 Identities=10% Similarity=0.109 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCC--CCHHHHHHHHHHHHHHhhc
Q 015269 321 QKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEE--LPLKEAHAIGESLQNKIEK 378 (410)
Q Consensus 321 ~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~--~~l~eah~I~~~lq~~L~~ 378 (410)
+.|+..+.+||+|....-+-+-.-+..-.+.+.+++.+. .+..+..++.+.++..+..
T Consensus 17 ~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~ 76 (109)
T 3lax_A 17 IQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKD 76 (109)
T ss_dssp HHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHH
Confidence 567778899999887666666555555555566666554 3455567788888888864
No 25
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=30.21 E-value=65 Score=23.27 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=20.3
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 015269 174 KYPIGKLRVQPVGIIIFAAIMATLGFQVLIE 204 (410)
Q Consensus 174 ~~P~G~~R~E~l~~li~sv~m~~~~~~il~e 204 (410)
.|-|-|..+. +++|+++.+++++|+.++..
T Consensus 9 pF~YDY~tLR-igGLifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 9 PFYYDWESLQ-LGGLIFGGLLCIAGIALALS 38 (67)
T ss_dssp GGGGGGHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred CcccchHHhe-ecchhhHHHHHHHHHHHHHc
Confidence 4444555543 57888888888888877643
No 26
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=29.62 E-value=5.9e+02 Score=27.84 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=36.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEee
Q 015269 350 VEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 391 (410)
Q Consensus 350 Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~ 391 (410)
+.+.+..+++.+++++.++.+++++.+++.|+|++++-.+..
T Consensus 577 ~~v~~~~p~Gtsle~t~~~~~~ie~~l~~~p~V~~v~s~~G~ 618 (1054)
T 3ne5_A 577 LLYMPSTLPGISAAEAASMLQKTDKLIMSVPEVARVFGKTGK 618 (1054)
T ss_dssp EEECCBCCTTCCHHHHHHHHHHHHHHHHTSTTEEEEEEEEEC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEEecC
Confidence 455677889999999999999999999999999998876654
No 27
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ...
Probab=29.42 E-value=2.4e+02 Score=27.97 Aligned_cols=83 Identities=14% Similarity=0.190 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhc-CCCceEEEEEEeecCCC
Q 015269 317 PEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEK-LPEVERAFVHLDYECDH 395 (410)
Q Consensus 317 ~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~-l~~v~~v~Vhvd~~~~~ 395 (410)
|+..+.|.+...+...--++.+++++..|+.+++.+.+....-|=-.-.....|.+-..|++ .|+.....|-=.|..|.
T Consensus 178 ~~~~~~l~~~~~stsr~g~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~~~~~sIsgN~~tdk 257 (441)
T 2r4f_A 178 SEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDK 257 (441)
T ss_dssp HHHHHHHHHHHHTTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEEEESCCSCSCCS
T ss_pred hhhHHHHHHHhhhcccccccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCCCeEEEEecCCcccc
Confidence 34445555555555555667788888899988888888887666555566667777777754 56665566666677777
Q ss_pred CCcc
Q 015269 396 KPEH 399 (410)
Q Consensus 396 ~p~h 399 (410)
+|.-
T Consensus 258 k~~A 261 (441)
T 2r4f_A 258 KPAA 261 (441)
T ss_dssp SCCH
T ss_pred eeeE
Confidence 7754
No 28
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=29.27 E-value=56 Score=24.07 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=20.8
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 015269 173 YKYPIGKLRVQPVGIIIFAAIMATLGFQVLI 203 (410)
Q Consensus 173 ~~~P~G~~R~E~l~~li~sv~m~~~~~~il~ 203 (410)
..|-|-|..+ -+++|+++.+++++|+.++.
T Consensus 10 dpF~YDY~tL-RigGLifA~vLfi~GI~iil 39 (74)
T 2zxe_G 10 ERFTYDYYRL-RVVGLIVAAVLCVIGIIILL 39 (74)
T ss_dssp GGGCCCHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCcccchHHh-eeccchhHHHHHHHHHHHHH
Confidence 3444555554 36788889988888887763
No 29
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=28.25 E-value=1.8e+02 Score=23.01 Aligned_cols=66 Identities=27% Similarity=0.337 Sum_probs=41.0
Q ss_pred hcCCCChHHHHHHHHHHHcC-CCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEE
Q 015269 311 VGQSAPPEILQKLTYLVIRH-PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERA 385 (410)
Q Consensus 311 ~g~s~~~e~~~~I~~~~~~~-~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v 385 (410)
+|. +.+++.+.|..++.++ |+-..+ ..|.-+.|...-|.+.|.+... + -.+.|-++|.+.|+|..+
T Consensus 42 IG~-a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~S~---e----Qv~aiY~~L~~~~~VkmV 108 (109)
T 1rwu_A 42 MGQ-ALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINATHI---E----QVETLYEELGKIDIVRMV 108 (109)
T ss_dssp EEE-CCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCSSH---H----HHHHHHHHHSCSSSCEEE
T ss_pred EEE-CcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEECCH---H----HHHHHHHHHhcCCCEEEe
Confidence 443 4677899999999998 632222 3444334555557777766432 3 345666777788887643
No 30
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=26.25 E-value=1.9e+02 Score=24.45 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHcCCCccccceEEEeeecCeEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEE
Q 015269 316 PPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFV 387 (410)
Q Consensus 316 ~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~V 387 (410)
.|-.+.+|..++.+.. .+|.++.+......-...+.++++.+ .+..+.+.++|+++++|.+|.-
T Consensus 13 rpGvLarIt~lfs~rg--~NI~Sl~v~~t~d~~~sriti~V~~d------~~~leqI~kqL~Kl~dV~~V~r 76 (164)
T 2f1f_A 13 ESGALSRVIGLFSQRG--YNIESLTVAPTDDPTLSRMTIQTVGD------EKVLEQIEKQLHKLVDVLRVSE 76 (164)
T ss_dssp CTTHHHHHHHHHHTTT--CCCSEEEEEECSCSSEEEEEEEEESC------HHHHHHHHHHHHHSTTEEEEEE
T ss_pred CCcHHHHHHHHHHHCC--CCeeeceeeecCCCCEEEEEEEEecc------HHHHHHHHHHHcCCCCEEEEEE
Confidence 4567889999888763 46677777655432233455555543 4566888899999999977653
No 31
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=25.50 E-value=1.1e+02 Score=21.86 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEee
Q 015269 317 PEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 391 (410)
Q Consensus 317 ~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~ 391 (410)
+...+++.+.+.+.|+|..++.+ .|+ ++.+ .+.++. ..++.+-+.+.|.++|+|.++..++--
T Consensus 12 ~~~~~~~~~~l~~~peV~~~~~v----tG~~d~l~--~v~~~d------~~~l~~~~~~~l~~~~gV~~~~t~ivl 75 (83)
T 2zbc_A 12 AGGEDEVFERLKSMSEVTEVHVV----YGVYDIVV--KVEADS------MDKLKDFVTNTIRKLPKVRSTLTMIIV 75 (83)
T ss_dssp TTCHHHHHHHHTTCTTEEEEEEC----SSSCSEEE--EEECSS------HHHHHHHHHHTGGGSTTEEEEEEEECC
T ss_pred CCCHHHHHHHHhCCCCeEEEEEE----eccCCEEE--EEEECC------HHHHHHHHHHHhcCCCCEeEEEEEEEE
Confidence 33357788888888877665332 354 4554 444432 233445556688899999988777754
No 32
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=24.81 E-value=1.9e+02 Score=29.64 Aligned_cols=69 Identities=19% Similarity=0.129 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH------HHHHHHHHHHHHhhcCCCChHHHHHHHHHHHcC
Q 015269 261 FDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVYTIT------NWSETVMENAVSLVGQSAPPEILQKLTYLVIRH 330 (410)
Q Consensus 261 ~Dv~~n~~~lv~~~l~~~~~~~~Dpi~ailIa~~ii~------~~~~~~~e~~~~L~g~s~~~e~~~~I~~~~~~~ 330 (410)
-|++...+++++.+++....+.+-++++++ +.++-. .-|..+.+.+..|+++..++.........+...
T Consensus 4 ~~~v~~~i~i~~~ilg~~~vP~vg~~~~~~-s~l~~~lwp~~~~~w~~~~~~ve~lIdq~I~~~~~~~a~~~l~gl 78 (589)
T 3eb7_A 4 RDAVKTAISLVGTILGKLGVPLVGPIVSLY-STLIDVLWPGGKSQWEIFMEQVEALINQKIAEYARAKALAELEGL 78 (589)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHH-HHHHHHHCCSSSCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCcHHHHHHHH-HHHHhhhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777655445444444332 111111 225778899999999999988776666665443
No 33
>2i52_A Hypothetical protein; structural genomics, unknown function, PSI, protein structur initiative; 2.08A {Picrophilus torridus} SCOP: d.316.1.1
Probab=24.35 E-value=60 Score=26.32 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEeecC
Q 015269 363 KEAHAIGESLQNKIEKLPEVERAFVHLDYEC 393 (410)
Q Consensus 363 ~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~~ 393 (410)
+.++-+-..+++.++..|.++++.|+++ +.
T Consensus 41 eta~sLE~AIE~si~~QP~v~~v~V~I~-d~ 70 (121)
T 2i52_A 41 ENASMAEEFIERSTMIQPFVENVRISIN-NV 70 (121)
T ss_dssp TTHHHHHHHHHHHHTTSTTEEEEEEEEC-CC
T ss_pred ccHHHHHHHHHHHHhcCCceEEEEEEEe-hh
Confidence 3467777888999999999999999998 55
No 34
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.15 E-value=1.8e+02 Score=24.35 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=43.8
Q ss_pred CCChHHHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEeec
Q 015269 314 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDYE 392 (410)
Q Consensus 314 s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~~ 392 (410)
..+++..+++.+.+.+.|+|..++.+ .|+ ++++.+.. +. .+ ++.+-+ ++|.++|+|.++..++--.
T Consensus 94 ~~~~~~~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~~--~d---~~---~l~~~l-~~l~~~~gV~~~~t~ivl~ 160 (171)
T 2e1c_A 94 KVKAGKYSEVASNLAKYPEIVEVYET----TGDYDMVVKIRT--KN---SE---ELNNFL-DLIGSIPGVEGTHTMIVLK 160 (171)
T ss_dssp EECTTCHHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEEE--SS---HH---HHHHHH-HHHHHSTTEEEEEEEECSC
T ss_pred EECcchHHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEEE--CC---HH---HHHHHH-HHHhcCCCcceEEEEEEEE
Confidence 34566778899999999988776442 365 56654443 22 23 344445 7788889999887777654
No 35
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=22.07 E-value=79 Score=23.06 Aligned_cols=30 Identities=20% Similarity=0.461 Sum_probs=20.2
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 015269 174 KYPIGKLRVQPVGIIIFAAIMATLGFQVLIE 204 (410)
Q Consensus 174 ~~P~G~~R~E~l~~li~sv~m~~~~~~il~e 204 (410)
.|-|-|..+. +++|+++.+++++|+.++..
T Consensus 8 PF~YDY~tLR-iGGLifA~vLfi~GI~iilS 37 (72)
T 2jo1_A 8 PFTYDYQSLQ-IGGLVIAGILFILGILIVLS 37 (72)
T ss_dssp GGGCSTHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHhh-ccchHHHHHHHHHHHHHHHc
Confidence 3444555543 57788888888888877654
No 36
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=22.00 E-value=1.6e+02 Score=23.37 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=42.1
Q ss_pred CChHHHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEe
Q 015269 315 APPEILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 390 (410)
Q Consensus 315 ~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd 390 (410)
.+++..+.+.+.+.+.|+|..++.+ .|+ ++++. +..+. ..++.+-+.+.|.+.|+|.+...++-
T Consensus 72 ~~~~~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~~--v~~~d------~~~l~~~~~~~l~~~~gV~~~~t~iv 136 (141)
T 1i1g_A 72 TKPEKLFEVAEKLKEYDFVKELYLS----SGDHMIMAV--IWAKD------GEDLAEIISNKIGKIEGVTKVCPAII 136 (141)
T ss_dssp ECGGGHHHHHHHHHHSTTEEEECCC----SSSSSEEEE--EEESS------HHHHHHHHHHTTTTSTTEEEEEEEEC
T ss_pred ECchhHHHHHHHHhcCCCeEEEEEe----cCCCCEEEE--EEECC------HHHHHHHHHHHhhcCCCEeEEEEEEE
Confidence 3566778888899999988776542 465 55554 44432 23344445577888999998777664
No 37
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=21.05 E-value=1.1e+02 Score=20.65 Aligned_cols=41 Identities=20% Similarity=0.159 Sum_probs=27.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhhcCCC--ceEEEEEEeec
Q 015269 352 VDIELPEELPLKEAHAIGESLQNKIEKLPE--VERAFVHLDYE 392 (410)
Q Consensus 352 v~I~v~~~~~l~eah~I~~~lq~~L~~l~~--v~~v~Vhvd~~ 392 (410)
++|.+.+..+..+-.++.+.|-+.+.+..+ -++++|+++..
T Consensus 4 i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~ 46 (64)
T 3abf_A 4 LKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEV 46 (64)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEc
Confidence 344444557777778888888888864222 35788888754
No 38
>3ce8_A Putative PII-like nitrogen regulatory protein; structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE; 2.40A {Shewanella baltica}
Probab=20.91 E-value=2.2e+02 Score=22.91 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=50.4
Q ss_pred CCChHHHHHHHHHHHcCCCccccceEEEeeecCe--------------EEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcC
Q 015269 314 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVL--------------YFVEVDIELPEELPLKEAHAIGESLQNKIEKL 379 (410)
Q Consensus 314 s~~~e~~~~I~~~~~~~~~V~~v~~vr~~~~G~~--------------~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l 379 (410)
-.+|+.++.++..+...+++.+..-..+.-.|.. -.+.+.|+++.+ ++.++.+.|.+....
T Consensus 29 IIrP~kld~V~daL~~~~gi~G~TvseV~G~Grqkg~~S~~E~yrG~epKvkiEivv~d~----~ve~vv~aI~~~a~t- 103 (120)
T 3ce8_A 29 IAQNDIKDDIVDTLIELEFLSGFSLGNICGFSREHSHFNIKEQVEGYREFCKFEIMHPAA----QQAALLTALALVCKH- 103 (120)
T ss_dssp EEEGGGHHHHHHHHTTCTTCCCCEEEEEEEEECC-----------EEEEEEEEEEEEEGG----GHHHHHHHHHHHTTT-
T ss_pred EeCHHHHHHHHHHHHhCCCCCcEEEEeeEEeCCCCCCCCceeEEecCCceEEEEEEECHH----HHHHHHHHHHHHcCC-
Confidence 3578899999999999988887665555555541 235778888765 688899999888754
Q ss_pred CCceEEEEEE
Q 015269 380 PEVERAFVHL 389 (410)
Q Consensus 380 ~~v~~v~Vhv 389 (410)
.++ .+||.-
T Consensus 104 g~I-KIfV~p 112 (120)
T 3ce8_A 104 NPC-RYWIMP 112 (120)
T ss_dssp SCC-EEEEEE
T ss_pred CCE-EEEEEE
Confidence 344 677653
No 39
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=20.69 E-value=80 Score=25.56 Aligned_cols=28 Identities=11% Similarity=0.224 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhcCCCceEEEEEEe
Q 015269 363 KEAHAIGESLQNKIEKLPEVERAFVHLD 390 (410)
Q Consensus 363 ~eah~I~~~lq~~L~~l~~v~~v~Vhvd 390 (410)
+.++-+-..+++.++..|.++++.|+++
T Consensus 46 eta~sLE~AIE~si~~QP~v~~v~V~I~ 73 (122)
T 2ogf_A 46 YNKESLERAIEEAMKNQPCVYDIKVKIR 73 (122)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEEEEEEEC
T ss_pred ccHHHHHHHHHHHHhcCCceEEEEEEEe
Confidence 4467788889999999999999999998
No 40
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=20.57 E-value=1.9e+02 Score=23.69 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHcCCCccccceEEEeeecC-eEEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCCCceEEEEEEee
Q 015269 318 EILQKLTYLVIRHPEVKRIDTVRAYTFGV-LYFVEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLDY 391 (410)
Q Consensus 318 e~~~~I~~~~~~~~~V~~v~~vr~~~~G~-~~~Vev~I~v~~~~~l~eah~I~~~lq~~L~~l~~v~~v~Vhvd~ 391 (410)
+..+++.+.+.++|+|..++. ..|+ ++++.+. .+. ..++.+-+.+.|.++|+|.++..++--
T Consensus 83 ~~~~~~~~~l~~~peV~~~~~----vtG~~d~~~~v~--~~d------~~~l~~~l~~~l~~~~gV~~~~t~ivl 145 (162)
T 2p5v_A 83 DAREDFAASVRKWPEVLSCFA----LTGETDYLLQAF--FTD------MNAFSHFVLDTLLSHHGVQDAQSSFVL 145 (162)
T ss_dssp THHHHHHHHHTTCTTEEEEEE----ESSSCSEEEEEE--ESS------HHHHHHHHHHTTTTSTTEEEEEEEEEE
T ss_pred hHHHHHHHHHhcChhhhEeee----ecCCCCEEEEEE--ECC------HHHHHHHHHHHhhcCCCeeEEEEEEEE
Confidence 457888888888888776654 2365 5555444 322 233445556778889999887666554
Done!