RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 015269
(410 letters)
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
cell inner membrane, cell membrane, ION transport, iron
transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Length = 283
Score = 154 bits (392), Expect = 3e-44
Identities = 57/281 (20%), Positives = 118/281 (41%), Gaps = 11/281 (3%)
Query: 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGI-LWFTHVAMKNINIY 173
RA + +LL KIFA +GS++I A+ +DSL+D+ A L +++ +
Sbjct: 4 RAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPAD-D 62
Query: 174 KYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGA 233
+ G + + + + + ++ + + ++ L+ P + I A
Sbjct: 63 NHSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPMT-----DPGVGVIVTIVA 117
Query: 234 TVVKLALWIYCKSSGNKI----VRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAI 289
+ + L + + + VRA + DV+ N L+A L + D A+
Sbjct: 118 LICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFAL 177
Query: 290 LLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYF 349
+ +Y + + E SL+ ++ P E Q++ +V P V +R G F
Sbjct: 178 GIGIYILYSALRMGYEAVQSLLDRALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRF 237
Query: 350 VEVDIELPEELPLKEAHAIGESLQNKIEKLPEVERAFVHLD 390
+++ +E+ + LPL +AH + + ++ I + +H D
Sbjct: 238 IQIHLEMEDSLPLVQAHMVADQVEQAILRRFPGSDVIIHQD 278
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
(CDF), transporter, zinc, membrane protein, cytosolic
domain; 2.84A {Thermotoga maritima}
Length = 107
Score = 69.8 bits (171), Expect = 5e-15
Identities = 18/87 (20%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 314 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQ 373
++ + ++ R P V VR G YF+E+DIE+ ++ +K+AH + ++
Sbjct: 6 RTELDMYDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIR 65
Query: 374 NKI-EKLPEVERAFVHLDYECDHKPEH 399
++ ++ ++E +H++ + + E
Sbjct: 66 KEMLKRRDDIEDVTIHVEPLGNVEEEG 92
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 72.4 bits (177), Expect = 1e-13
Identities = 86/468 (18%), Positives = 155/468 (33%), Gaps = 140/468 (29%)
Query: 25 GSGRLSL--SRRNSVNA--LRHEFVSKLPEKVLAGIDAEAPFDVDTSKT---------IA 71
GS L + A L+ +F LPE + A D T+ ++
Sbjct: 14 GSLEHVLLVPTASFFIASQLQEQFNKILPEPT----EGFAADDEPTTPAELVGKFLGYVS 69
Query: 72 --LSEGE-KEYYESQFATLKSFEEVDVLVDSD--CFIEEDLQEQVQHERAMK--ISNYAN 124
+ + ++ + L FE L +D + LQE K I NY
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFEN-CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT 128
Query: 125 IVLLACKIFATIKSGSIAIAASTLDSLLDLMA--GG----ILWFTHVAMKNI-NIYKYPI 177
++A K KS S A+ + + L+A GG +F ++++ Y +
Sbjct: 129 ARIMA-KRPFDKKSNS-ALFRAVGEGNAQLVAIFGGQGNTDDYFEE--LRDLYQTYHVLV 184
Query: 178 GKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEP--PKKMNTVQLEWL--------- 226
G L I F+A + L E + + E + +N ++ WL
Sbjct: 185 GDL-------IKFSA-------ETLSELIRTTLDAEKVFTQGLNILE--WLENPSNTPDK 228
Query: 227 -------YSI-MIGATVVKLALW-IYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVL-- 275
S +IG V++LA + + K G + + + GLV AV
Sbjct: 229 DYLLSIPISCPLIG--VIQLAHYVVTAKLLG--FTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 276 ----GDSFY----------WWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQ 321
+SF+ ++I G Y T+ +++E+++ + P
Sbjct: 285 ETDSWESFFVSVRKAITVLFFI---GVRCYEAYPNTSLPPSILEDSLE-NNEGVP----- 335
Query: 322 KLTY-LVIR---HPEV-KRIDTVRAYTFG------VLY-----FVEVDIEL---PEEL-- 360
+ L I +V ++ ++ L V + P+ L
Sbjct: 336 --SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-----VSGPPQSLYG 388
Query: 361 ---PLKEAHAIGESLQNKI---EKLPEVERAFVHLDYECDHKPEHTVL 402
L++A A Q++I E+ + F L P H+ L
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVAS---PFHSHL 431
Score = 40.4 bits (94), Expect = 0.001
Identities = 58/332 (17%), Positives = 101/332 (30%), Gaps = 118/332 (35%)
Query: 77 KEYYESQFATLKSFEEVDV-LVDSDCF-----IEEDLQEQVQH---ERAMKI-SNYANIV 126
+ Y++ A + D D+ F + + H E+ +I NY+ ++
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 127 --------LLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMK--NINIYKYP 176
L KIF I S + + LL FT A+ ++
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-----FTQPALTLMEKAAFED- 1746
Query: 177 IGKLRVQPVGIIIFAAIMA--TLG-------------FQVLIEAVE---KLVKDEPPKKM 218
L+ + G+I A A +LG + L+E V ++ P+
Sbjct: 1747 ---LKSK--GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 219 NTVQLEWLYSIMIGATVVKLALWIYCKSSGNKIVRAYAKDHYFDVVT----NVVG--LVA 272
+ +I G + + +V K + +V NV VA
Sbjct: 1802 LGRSNYGMIAINPGRVAASF-----SQEALQYVVERVGKRTGW-LVEIVNYNVENQQYVA 1855
Query: 273 AVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHPE 332
A GD L A+ T+TN +L + +
Sbjct: 1856 A--GD------------LRALDTVTN--------------------VLNFI--------K 1873
Query: 333 VKRIDTVRAYTFGVLYFVEVDIELPEELPLKE 364
+++ID IEL + L L+E
Sbjct: 1874 LQKIDI---------------IELQKSLSLEE 1890
Score = 34.6 bits (79), Expect = 0.060
Identities = 42/278 (15%), Positives = 85/278 (30%), Gaps = 101/278 (36%)
Query: 119 ISNYANIVLLACKI-------FATIKSG----------SIAIAAS-TLDSLLDLMAGGIL 160
+++Y ++ K+ + G ++AIA + + +S + I
Sbjct: 246 LAHY----VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 161 WFTHVAMKNINIYKYPIGKLRVQ---PVGIIIFAAI-------------MAT---LGFQV 201
IG +R P + + + M + L +
Sbjct: 302 VLFF------------IG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 202 LIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGAT--VV--------KLALWI--YCKSSG- 248
+ + V K P K V++ S++ GA VV L L + SG
Sbjct: 349 VQDYVNKTNSHLPAGK--QVEI----SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 249 --NKIV---RAYAKDHYFDVVT---------NVVGLVAA-VLGDSFYWWIDPAGAILLAV 293
++I R + F V L+ ++ ++ + A I + V
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN---AKDIQIPV 459
Query: 294 YTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRHP 331
Y + S+ + I +++ +IR P
Sbjct: 460 YDTFDGSDL----------RVLSGSISERIVDCIIRLP 487
>3byp_A CZRB protein; membrane protein, zinc transporter, transport
protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
PDB: 3byr_A
Length = 94
Score = 62.7 bits (153), Expect = 1e-12
Identities = 16/92 (17%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 310 LVGQSAPPEILQKLTYLVIRH--PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHA 367
L+ + PPE ++++ + + ++ G F+E + + + P++EAH
Sbjct: 2 LMDEGLPPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHR 61
Query: 368 IGESLQNKIEKLPEVERAFVHLDYECDHKPEH 399
+ + L+ + + +A +H++ E + K +
Sbjct: 62 LCDELERALAQAFPGLQATIHVEPEGERKRTN 93
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 3e-05
Identities = 40/393 (10%), Positives = 104/393 (26%), Gaps = 113/393 (28%)
Query: 74 EGEKEYYESQFATLKSFEEVDVLVDSDCFIEEDLQEQVQHERAMKISNYANIVL---LAC 130
Y Q L + + V + + +++ + +++ N+++ L
Sbjct: 106 SMMTRMYIEQRDRL--YNDNQVFAKYNVSRLQPY-LKLR-QALLELRPAKNVLIDGVLGS 161
Query: 131 KIFATIKSGSIAIAASTLDS--LLDLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGII 188
K+ +A S + M I W + P ++
Sbjct: 162 G-----KT---WVALDVCLSYKVQCKMDFKIFWLN-------------LKNCN-SPETVL 199
Query: 189 IFAAIMATLGFQVLIEAVEKL-VKDEPPKKMNTVQLEWLYSIMIGATVVKLALWIYCKS- 246
++ L +Q+ + +++++Q L + L Y
Sbjct: 200 E---MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRL--------LKSKPYENCL 247
Query: 247 ------SGNKIVRAYAKDHYFD------VVTNVVGLVAAVLGDSFYWWIDPAGAILLAVY 294
K A F+ + T + + + +
Sbjct: 248 LVLLNVQNAKAWNA------FNLSCKILLTTRFKQVTDFLSAATTT---HISLDHHSMTL 298
Query: 295 TITNWSETVMENAVSLVGQSAPPEILQKLTYLVI-----------------RHPEVKRID 337
T ++++ + Q P E+L + +H ++
Sbjct: 299 TPDE-VKSLLLKYLDCRPQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
Query: 338 TVRAYTFGVL-------YFVEV-----DIELPE--------ELPLKEAHAIGESLQNK-- 375
T+ + VL F + +P ++ + + L
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 376 IEKLPEVERAFVH---LDY--ECDHKPE-HTVL 402
+EK P+ + L+ + +++ H +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Score = 37.1 bits (85), Expect = 0.011
Identities = 38/220 (17%), Positives = 60/220 (27%), Gaps = 69/220 (31%)
Query: 22 KRSGSGRLSLSRRNSVNAL-----RHEFVS--------KLPEKVLA----GIDAEAPFDV 64
K +L+ +S+N L R F +P +L+ + V
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 65 DTS--KTIALSEGEKEYYES----QFATLKSFEEVDVL----VDS----DCFIEEDLQEQ 110
K + + KE S E L VD F +DL
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467
Query: 111 VQ----------H----ERAMKISNYANIVL----LACKIFATIKSGSIAIA-ASTLDSL 151
H E +++ + + L L KI + A S L++L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI---RHDSTAWNASGSILNTL 524
Query: 152 LDL----------------MAGGILWFTHVAMKNINIYKY 175
L + IL F +N+ KY
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5;
beta-strands, chaperone, heat shock, mitochondrion;
2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1
g.54.1.1
Length = 248
Score = 29.1 bits (66), Expect = 2.6
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 327 VIRHPEVKRID-----TVRAYTFGVLYFVEVDIELPEELPLKE 364
VI K I+ + +G L ++ I+ PE E
Sbjct: 200 VIAPGMRKVIEGKGMPIPKYGGYGNLI-IKFTIKDPENHFTSE 241
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar
transport, SGLT, ION TRAN membrane, sodium transport,
symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Length = 530
Score = 27.8 bits (62), Expect = 8.7
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 15/102 (14%)
Query: 108 QEQVQH------ERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILW 161
Q +Q + L F + G A ++ L+ +
Sbjct: 239 QYIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAAT 298
Query: 162 FTHVAMKNINIYKYPIGKLRVQPVGII------IFAAIMATL 197
A Y + L PVG+ + AAI+++L
Sbjct: 299 NLPSAANADKAYPWLTQFL---PVGVKGVVFAALAAAIVSSL 337
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.387
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,333,554
Number of extensions: 398548
Number of successful extensions: 721
Number of sequences better than 10.0: 1
Number of HSP's gapped: 712
Number of HSP's successfully gapped: 18
Length of query: 410
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 314
Effective length of database: 4,021,377
Effective search space: 1262712378
Effective search space used: 1262712378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)