RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 015269
(410 letters)
>d2qfia2 f.59.1.1 (A:5-208) Ferrous-iron efflux pump FieF
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 102 bits (256), Expect = 3e-26
Identities = 37/199 (18%), Positives = 78/199 (39%), Gaps = 1/199 (0%)
Query: 115 RAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLLDLMAGGILWFTHVAMKNINIYK 174
RA + +LL KIFA +GS++I A+ +DSL+D+ A
Sbjct: 7 RAAIAATAMASLLLLIKIFAWWYTGSVSILAALVDSLVDIGASLTNLLVVRYSLQPADDN 66
Query: 175 YPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKDEPPKKMNTVQLEWLYSIMIGAT 234
+ G + + + + + ++ + + ++ L+ P V + +I
Sbjct: 67 HSFGHGKAESLAALAQSMFISGSALFLFLTGIQHLISPTPM-TDPGVGVIVTIVALICTI 125
Query: 235 VVKLALWIYCKSSGNKIVRAYAKDHYFDVVTNVVGLVAAVLGDSFYWWIDPAGAILLAVY 294
++ + + ++ VRA + DV+ N L+A L + D A+ + +Y
Sbjct: 126 ILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILLALGLSWYGWHRADALFALGIGIY 185
Query: 295 TITNWSETVMENAVSLVGQ 313
+ + E SL+ +
Sbjct: 186 ILYSALRMGYEAVQSLLDR 204
>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
{Escherichia coli [TaxId: 562]}
Length = 82
Score = 85.9 bits (213), Expect = 1e-21
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 314 SAPPEILQKLTYLVIRHPEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQ 373
+ P E Q++ +V P V +R G F+++ +E+ + LPL +AH + + ++
Sbjct: 1 ALPDEERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVE 60
Query: 374 NKIEKLPEVERAFVHLD 390
I + +H D
Sbjct: 61 QAILRRFPGSDVIIHQD 77
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus
thermophilus [TaxId: 274]}
Length = 82
Score = 74.8 bits (184), Expect = 1e-17
Identities = 14/79 (17%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 316 PPEILQKLTYLVIRHPEVKRID--TVRAYTFGVLYFVEVDIELPEELPLKEAHAIGESLQ 373
PPE ++++ + + ++ ++ G F+E + + + P++EAH + + L+
Sbjct: 3 PPEEVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELE 62
Query: 374 NKIEKLPEVERAFVHLDYE 392
+ + +A +H++ E
Sbjct: 63 RALAQAFPGLQATIHVEPE 81
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 30.1 bits (67), Expect = 0.50
Identities = 40/340 (11%), Positives = 103/340 (30%), Gaps = 39/340 (11%)
Query: 33 RRNSVNALRHEFVSKLPEKVLAGIDAEAPFDVDTSKTIALSEGEKEYYESQFATLKSFEE 92
+ + + K PE+ + + S ++Y +
Sbjct: 196 VTAATSLI-TTLAQKNPEEFKTSVSLAVSRLSRI--VTSASTDLQDYTYYFVPAPWLSVK 252
Query: 93 VDVLVDSDCFIEEDLQEQVQHERAMKISNYANIVLLACKIFATIKSGSIAIAASTLDSLL 152
+ L+ E+ E I N A + K+ + ++ A +L
Sbjct: 253 LLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHH 312
Query: 153 DLMAGGILWFTHVAMKNINIYKYPIGKLRVQPVGIIIFAAIMATLGFQVLIEAVEKLVKD 212
D ++ + + + + + L ++ + + + + IE V +K
Sbjct: 313 DSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEA-VKTHIETVINALKT 371
Query: 213 EPPKKMNTVQLEWLYSIMIGATVVKLA--LWIYCKSSGNKIVRAYAKDHYFDVVTNVVGL 270
E + ++ LY++ + ++ + Y +++ I + V +
Sbjct: 372 ERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREE---------IVLKVAI 422
Query: 271 VAAVLGDSFYWWIDPAGAILLAVYTITNWSETVMENAVSLVGQSAPPEILQKLTYLVIRH 330
+A + W++D + N + + G E+ ++ +VI
Sbjct: 423 LAEKYAVDYTWYVD------------------TILNLIRIAGDYVSEEVWYRVIQIVINR 464
Query: 331 PEVKRIDTVRAYTFGVLYFVEVDIELPEELPLKEAHAIGE 370
+ V+ Y ++ E L + +GE
Sbjct: 465 DD------VQGYAAKTVFEALQAPACHENLVKVGGYILGE 498
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white
cedar (Juniperus ashei) [TaxId: 13101]}
Length = 346
Score = 28.9 bits (64), Expect = 1.1
Identities = 9/70 (12%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 263 VVTNVVGLVAAVLGDSFYWWI--DPAGAILLAV-YTITNWSETVMENAVSLVGQSAPPEI 319
VT+ + + + A I+ + I + ++ G+ A +
Sbjct: 42 TVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHL 101
Query: 320 LQKLTYLVIR 329
L +R
Sbjct: 102 GNGGPCLFMR 111
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus
thermophilus [TaxId: 274]}
Length = 127
Score = 27.6 bits (61), Expect = 1.6
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 12 RRTSSSSRERKRSGSGRLSLSRRNSVNALRHEFVSKLPEKVLAGIDAEAPFDVDT 66
RR + +R R G+G+++++ ++ + + + L +DA FD
Sbjct: 8 RRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYI 62
>gi|152988212|ref|YP_001348091.1|(1-96:96) muconolactone
delta-isomerase [Pseudomonas aeruginosa PA7]
gi|150963370|gb|ABR85395.1| muconolactone
delta-isomerase [Pseudomonas aeruginosa PA7] E=1e-44
s/c=1.89 id=85% cov=101%
Length = 96
Score = 26.6 bits (59), Expect = 1.7
Identities = 5/22 (22%), Positives = 14/22 (63%)
Query: 347 LYFVEVDIELPEELPLKEAHAI 368
L+ V++ ++LP ++ + A +
Sbjct: 2 LFHVKMTVKLPADMDPQRAERL 23
>d1xppa_ d.74.3.2 (A:) DNA-directed RNA polymerase subunit L, RpoL
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 99
Score = 24.8 bits (54), Expect = 9.6
Identities = 9/58 (15%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 350 VEVDIELPEELPL---KEAHAIGESLQNKIEKLPEVERAFVHLDYECDHKPEHTVLNK 404
+ V + + + + + +L +I K +V+ A ++ + P+ V K
Sbjct: 5 LRVISKEKNSITVEMINYDNTLLRTLVEEILKDDQVDEARYYIKHPVIDNPQIYVRVK 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.387
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,514,778
Number of extensions: 71617
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 8
Length of query: 410
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 323
Effective length of database: 1,213,086
Effective search space: 391826778
Effective search space used: 391826778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)