BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015270
         (410 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EO2|A Chain A, Solution Structure Of The Insertion Region (510-573) Of
           Fthfs Domain From Mouse Methylenetetrahydrofolate
           Dehydrogenase (Nadp+ Dependent) 1-Like Protein
          Length = 71

 Score = 28.5 bits (62), Expect = 6.9,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 146 RALNNRLVALSFHIREYYWIDLRKLNEIYRYKTEEYSY--DAVNKF---NIYPDQI 196
           +AL NRLV L   +RE+  I L +L ++  +KT+  +   + V KF   NI P  I
Sbjct: 13  KALYNRLVPLVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATI 68


>pdb|1BLI|A Chain A, Bacillus Licheniformis Alpha-Amylase
          Length = 483

 Score = 28.1 bits (61), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 157 FHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIY 192
           +H     W + RKLN IY+++ + + ++  N+F  Y
Sbjct: 158 YHFDGTDWDESRKLNRIYKFQGKAWDWEVSNEFGNY 193


>pdb|1OB0|A Chain A, Kinetic Stabilization Of Bacillus Licheniformis-Amylase
           Through Introduction Of Hydrophobic Residues At The
           Surface
          Length = 483

 Score = 28.1 bits (61), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 157 FHIREYYWIDLRKLNEIYRYKTEEYSYDAVNKFNIY 192
           +H     W + RKLN IY+++ + + ++  N+F  Y
Sbjct: 158 YHFDGTDWDESRKLNRIYKFQGKAWDWEVSNEFGNY 193


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,054,128
Number of Sequences: 62578
Number of extensions: 548521
Number of successful extensions: 1166
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 5
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)