BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015271
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QWR|A Chain A, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
pdb|1QWR|B Chain B, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
Length = 319
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 312 LRRVAVEPSDHFFLPSSTELHSQESGS--LQDERNSRSVY 349
LRR+ ++P D +++PS T LH+ G+ L+ ++NS + Y
Sbjct: 157 LRRIKIKPGDFYYVPSGT-LHALCKGALVLETQQNSDATY 195
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 195 WRALYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEY 254
W + D+ P L+I ++DE P + F H+ DV+ G+ H H E
Sbjct: 253 WSVIDRLPDVTAPVLVIAGEHDEATP-KTWQPFVDHI----PDVRSHVFPGTSHCTHLE- 306
Query: 255 YPIQYRAAITGLLEK 269
P ++RA + L +
Sbjct: 307 KPEEFRAVVAQFLHQ 321
>pdb|3TRD|A Chain A, Structure Of An Alpha-Beta Serine Hydrolase Homologue From
Coxiella Burnetii
Length = 208
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 194 YWRALYNSVDLGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGH 251
++ + + +P+LI+ D DE+ P + + F + V+ V ++G+ H H
Sbjct: 139 FYEGFASLTQMASPWLIVQGDQDEVVPFEQVKAFVNQ---ISSPVEFVVMSGASHFFH 193
>pdb|4A8E|A Chain A, The Structure Of A Dimeric Xer Recombinase From Archaea
Length = 292
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 217 ELAPQQVIYNFARHLLALGGDVKLVK 242
EL P Q+ ++FA H+L G D+++++
Sbjct: 222 ELTPHQLRHSFATHMLERGIDIRIIQ 247
>pdb|3C9P|A Chain A, Crystal Structure Of Uncharacterized Protein Sp1917
Length = 123
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 156 PTIQKIPGLSKLVSWVAKGVTS 177
P Q+I L KLV W+AKG TS
Sbjct: 91 PLXQEIRRLDKLVDWLAKGKTS 112
>pdb|1THT|A Chain A, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
pdb|1THT|B Chain B, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
Length = 305
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 194 YWRALYNSVD----LGTPFLIICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPH 248
+W L +++D P + ++ND+ Q+ +Y+ H+ G KL L GS H
Sbjct: 185 HWDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT--GHCKLYSLLGSSH 241
>pdb|1A0P|A Chain A, Site-Specific Recombinase, Xerd
Length = 290
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 39/193 (20%)
Query: 110 QIIQATCEGQ-LNVDESRLIRSCVAGQIYDSSPVDFT-SDFCARFGLHPTIQK------I 161
+++QA Q L + + ++ A + S V T SD R G+ I K +
Sbjct: 118 RLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLV 177
Query: 162 PGLSKLVSWVAKGVTSG----LDGLCL-TRFEPQRAE------YWRALYNSVDLGTPFLI 210
P + V W+ + G L+G+ + F QRA+ +W + + L
Sbjct: 178 PLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLA----- 232
Query: 211 ICSDNDELAPQQVIYNFARHLLALGGDVKLVKLNGSPHIGHYEYYPIQYRAAITGLLEKA 270
D+++L+P + + FA HLL G D+++V++ +GH + Q
Sbjct: 233 -GIDSEKLSPHVLRHAFATHLLNHGADLRVVQML----LGHSDLSTTQI----------Y 277
Query: 271 ASVYSQRIRQLGE 283
V ++R+RQL +
Sbjct: 278 THVATERLRQLHQ 290
>pdb|1MGS|A Chain A, The Solution Structure Of Melanoma Growth Stimulating
Activity
pdb|1MGS|B Chain B, The Solution Structure Of Melanoma Growth Stimulating
Activity
Length = 73
Score = 28.1 bits (61), Expect = 8.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 93 VFVALSGGTKACMHKAFQIIQATCEGQLNVDES 125
V L G KAC++ A I++ E LN D+S
Sbjct: 40 VIATLKNGRKACLNPASPIVKKIIEKMLNSDKS 72
>pdb|1MSG|A Chain A, Solution Structure Of Gro(Slash)melanoma Growth
Stimulatory Activity Determined By 1h Nmr Spectroscopy
pdb|1MSG|B Chain B, Solution Structure Of Gro(Slash)melanoma Growth
Stimulatory Activity Determined By 1h Nmr Spectroscopy
pdb|1MSH|A Chain A, Solution Structure Of Gro(Slash)melanoma Growth
Stimulatory Activity Determined By 1h Nmr Spectroscopy
pdb|1MSH|B Chain B, Solution Structure Of Gro(Slash)melanoma Growth
Stimulatory Activity Determined By 1h Nmr Spectroscopy
Length = 72
Score = 28.1 bits (61), Expect = 8.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 93 VFVALSGGTKACMHKAFQIIQATCEGQLNVDES 125
V L G KAC++ A I++ E LN D+S
Sbjct: 40 VIATLKNGRKACLNPASPIVKKIIEKMLNSDKS 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,247,355
Number of Sequences: 62578
Number of extensions: 506154
Number of successful extensions: 1144
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1139
Number of HSP's gapped (non-prelim): 10
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)