BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015271
         (410 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O31646|MANA1_BACSU Mannose-6-phosphate isomerase ManA OS=Bacillus subtilis (strain
           168) GN=manA PE=3 SV=1
          Length = 315

 Score = 33.5 bits (75), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 309 NQSLRRVAVEPSDHFFLPSSTELHSQESG--SLQDERNSRSVY 349
           ++ LRRV V+P D F++PS T +H+   G  +L+ ++NS + Y
Sbjct: 150 DELLRRVKVKPGDFFYVPSGT-VHAIGKGILALETQQNSDTTY 191


>sp|O05511|MANA2_BACSU Probable mannose-6-phosphate isomerase GmuF OS=Bacillus subtilis
           (strain 168) GN=gmuF PE=1 SV=1
          Length = 315

 Score = 33.1 bits (74), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 3/43 (6%)

Query: 309 NQSLRRVAVEPSDHFFLPSSTELHSQESGS--LQDERNSRSVY 349
           N  LRR+ ++P D F++PS T LH+   G+  L+ ++NS + Y
Sbjct: 150 NGLLRRIKIKPGDFFYVPSGT-LHALCKGTLVLEIQQNSDTTY 191


>sp|Q5UQ59|SYR_MIMIV Arginine--tRNA ligase OS=Acanthamoeba polyphaga mimivirus GN=RARS
           PE=3 SV=1
          Length = 600

 Score = 32.7 bits (73), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 32  WVSVHEHQLRSFVDLYSSLGWNSLVSNSHFLDAFYPERATSLA 74
           W  +H+  + SF ++YS LG N+L++     ++FY ++ T L 
Sbjct: 255 WQKIHKISMNSFHEIYSLLGINNLITKG---ESFYQDQMTELV 294


>sp|Q07TH8|GLGA_RHOP5 Glycogen synthase OS=Rhodopseudomonas palustris (strain BisA53)
           GN=glgA PE=3 SV=1
          Length = 489

 Score = 32.3 bits (72), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 13/105 (12%)

Query: 95  VALSGGTKACMHKAFQIIQATCEGQLNV------DESRLIRSCVAGQIYDS--SPVDFTS 146
           +AL G   A +  AF+ +  +  GQ+ V      D + LI++     +  S   P   T 
Sbjct: 327 LALLGAGDAALEAAFRQVAQSHPGQIGVVVGYDEDLAHLIQAGADALLVPSRFEPCGLTQ 386

Query: 147 DFCARFGLHPTIQKIPGLSKLV-----SWVAKGVTSGLDGLCLTR 186
               R+G  P + ++ GLS  V       +A GV +G+    +TR
Sbjct: 387 LCALRYGAVPVVARVGGLSDTVVDANEMAIAAGVATGVQFSPVTR 431


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,624,726
Number of Sequences: 539616
Number of extensions: 6254407
Number of successful extensions: 14427
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 14422
Number of HSP's gapped (non-prelim): 9
length of query: 410
length of database: 191,569,459
effective HSP length: 120
effective length of query: 290
effective length of database: 126,815,539
effective search space: 36776506310
effective search space used: 36776506310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)