BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015272
         (410 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UWD|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From Bacillus
           Anthracis
          Length = 394

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 368 AGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKTF 404
           A VKD   LI  H  +LD+VD+ I  G LAY+FVK  
Sbjct: 196 AKVKDKIGLIR-H--LLDKVDNLIIGGGLAYTFVKAL 229


>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
           Kinase From Bacillus Stearothermophilus At 1.65
           Angstroms
          Length = 394

 Score = 29.3 bits (64), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 368 AGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKTF 404
           A VKD   +I     +L++VD+ I  G LAY+FVK  
Sbjct: 196 AKVKDKIGVIDN---LLEKVDNLIIGGGLAYTFVKAL 229


>pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|B Chain B, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|C Chain C, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|D Chain D, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|E Chain E, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|F Chain F, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|G Chain G, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
 pdb|3AQ0|H Chain H, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length
           Prenyl Pyrophosphate Synthase (Surface Polar Residue
           Mutant)
          Length = 348

 Score = 28.5 bits (62), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 57  LRVRQTGIDTNRRMISAVARAEPDHLDDGNLKEGI 91
           LRVRQ GI     MI   +    D LDD + + G+
Sbjct: 85  LRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGV 119


>pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
           Pyrophosphate Synthase
 pdb|3APZ|B Chain B, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl
           Pyrophosphate Synthase
          Length = 348

 Score = 28.5 bits (62), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 57  LRVRQTGIDTNRRMISAVARAEPDHLDDGNLKEGI 91
           LRVRQ GI     MI   +    D LDD + + G+
Sbjct: 85  LRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGV 119


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,251,414
Number of Sequences: 62578
Number of extensions: 379517
Number of successful extensions: 962
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 5
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)