Query 015272
Match_columns 410
No_of_seqs 144 out of 1349
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:44:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02953 phosphatidate cytidyl 100.0 1E-101 3E-106 774.3 36.1 392 1-410 1-403 (403)
2 PRK11624 cdsA CDP-diglyceride 100.0 4.5E-59 9.8E-64 458.3 32.5 266 115-403 1-280 (285)
3 COG0575 CdsA CDP-diglyceride s 100.0 5.7E-49 1.2E-53 383.0 31.3 257 115-404 1-262 (265)
4 PF01148 CTP_transf_1: Cytidyl 100.0 1.5E-48 3.3E-53 371.9 29.1 258 117-404 1-259 (259)
5 COG4589 Predicted CDP-diglycer 100.0 2.5E-47 5.5E-52 360.4 30.1 262 112-404 32-301 (303)
6 KOG1440 CDP-diacylglycerol syn 100.0 9.7E-46 2.1E-50 370.7 20.8 317 29-410 35-401 (432)
7 PLN02594 phosphatidate cytidyl 100.0 4.5E-45 9.7E-50 362.9 21.5 162 219-406 94-301 (342)
8 PRK04032 hypothetical protein; 100.0 1E-29 2.3E-34 229.3 11.2 101 296-403 23-125 (159)
9 PF01864 DUF46: Putative integ 99.3 5.6E-12 1.2E-16 116.3 9.5 91 307-402 44-141 (175)
10 KOG4453 Predicted ER membrane 97.9 2.8E-05 6E-10 74.3 7.7 79 281-363 162-246 (269)
11 COG0170 SEC59 Dolichol kinase 97.2 0.0014 3.1E-08 62.7 8.2 45 285-330 123-167 (216)
12 KOG2468 Dolichol kinase [Lipid 95.6 0.024 5.2E-07 59.4 6.5 46 284-331 418-463 (510)
13 KOG1440 CDP-diacylglycerol syn 92.6 0.1 2.2E-06 54.2 3.5 103 217-324 214-316 (432)
14 COG1836 Predicted membrane pro 88.2 28 0.0006 34.2 17.6 78 283-366 128-214 (247)
15 PF01940 DUF92: Integral membr 84.4 42 0.0009 32.6 18.0 79 281-365 112-199 (226)
16 TIGR01594 holin_lambda phage h 83.6 3.1 6.7E-05 35.8 5.8 73 291-372 33-107 (107)
17 TIGR00297 conserved hypothetic 80.5 15 0.00032 36.0 10.0 82 282-369 118-208 (237)
18 COG0004 AmtB Ammonia permease 50.9 21 0.00046 37.6 4.5 40 339-381 279-318 (409)
19 COG5336 Uncharacterized protei 44.6 58 0.0012 28.4 5.4 29 307-335 43-71 (116)
20 COG4944 Uncharacterized protei 42.1 46 0.001 31.7 4.8 56 311-366 157-212 (213)
21 PRK10847 hypothetical protein; 42.0 17 0.00037 34.7 2.0 26 279-304 76-101 (219)
22 PF06796 NapE: Periplasmic nit 34.3 1.3E+02 0.0029 23.0 5.4 12 109-120 11-22 (56)
23 PF10190 Tmemb_170: Putative t 33.9 2.3E+02 0.0049 24.5 7.4 69 285-353 20-92 (105)
24 PRK10666 ammonium transporter; 28.2 79 0.0017 33.6 4.5 54 339-395 302-357 (428)
25 COG0586 DedA Uncharacterized m 26.9 53 0.0012 31.1 2.7 27 279-305 61-87 (208)
26 TIGR00836 amt ammonium transpo 26.3 55 0.0012 34.4 2.9 93 286-393 237-331 (403)
27 TIGR03644 marine_trans_1 proba 25.7 85 0.0018 33.1 4.2 80 286-381 251-330 (404)
28 COG5547 Small integral membran 24.5 2.3E+02 0.0051 22.0 5.2 40 114-154 5-44 (62)
29 PF09335 SNARE_assoc: SNARE as 23.3 54 0.0012 27.3 1.8 26 280-305 22-47 (123)
30 PF13829 DUF4191: Domain of un 22.8 1.9E+02 0.0041 28.2 5.6 44 317-363 32-78 (224)
31 PF07857 DUF1632: CEO family ( 22.6 99 0.0022 30.6 3.8 14 114-128 176-189 (254)
32 COG5336 Uncharacterized protei 21.1 2.2E+02 0.0048 24.9 5.1 34 116-149 48-84 (116)
33 PF11283 DUF3084: Protein of u 20.8 95 0.0021 25.5 2.6 26 287-312 12-42 (79)
No 1
>PLN02953 phosphatidate cytidylyltransferase
Probab=100.00 E-value=1.3e-101 Score=774.30 Aligned_cols=392 Identities=72% Similarity=1.174 Sum_probs=330.7
Q ss_pred CccchhhcccCcccccccccccCCCCCCCCCcceeeccCCCCCccceeeccCCceeeeeccccccchhhHHHHHhhcCCC
Q 015272 1 MASFVEIDRCSHLISLPLTSLNACPCRPSSNKILIFTQKQPPKLNVRIVFNRPKFTLRVRQTGIDTNRRMISAVARAEPD 80 (410)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (410)
||+|+|+ +++||+|||||||+|||+||+||+|+ +|++-.|+||+||+|+|++|++||++|||||||||
T Consensus 1 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (403)
T PLN02953 1 MASFAEL--------VLSTSRCTCPCRSFSKKPLILPPLSG----LRLVGGDTKPLFRSGLGPISVKRRFLTAVARAESD 68 (403)
T ss_pred CchHHHH--------HHHhhhccCcCCCCCcCceecCcccc----cccCCCCCccccccCCCchhHHHHHHHHHHHhhhh
Confidence 8999999 99999999999999999999999997 56777799999999999999999999999999999
Q ss_pred CCCCCcccccccCCCccccccCCcCCccchhHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 015272 81 HLDDGNLKEGIDNGHKLVVSEKSVSDSGSQQKASQLRKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAREYFELV 160 (410)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~s~L~~RIiTalvl~~lv~~i~~~g~~~f~ll~~~l~~lgl~E~~~l~ 160 (410)
|+|||||+||+||+||+||+|+ ||++.+|+++|++||++++++++.+++.|+|+|.+++++++.++++||++|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~RIiSglvl~~l~l~vV~~GGw~F~~~va~iv~lg~~E~frmv 142 (403)
T PLN02953 69 QLGDDDHAKEIDRIHDLQNVED------KQKKASQLKKRVIFGIGIGLPVGCVVLAGGWFFTVALAASVFIGSREYFELV 142 (403)
T ss_pred hccCCCccchhhhhcccccccc------cccccccHHHHHHHHHHHHHHHHheeeeCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999977 8888999999999999998888888899999999999999999999999999
Q ss_pred HhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhHHHHH
Q 015272 161 RSRGIAAGMTPPPRYVSRVCSVICAFMPILTLYFGQIDVSVTFAAFVVAMALLLQRGNPRFAQLSSTIFGLFYCGYLPCF 240 (410)
Q Consensus 161 ~~~g~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~tl~Gi~Yi~~~~s~ 240 (410)
+.+++.+...+++.+....+.+.+..++...++.+.....+....+.++...+.++++.++++++.+++|++|++++++|
T Consensus 143 ~~~gi~p~~~~~~~~~~~~g~v~~~~~~v~~~~~g~~~~~l~l~~~~i~~~ll~~~~~~~~~di~~s~fgl~Yig~lpsf 222 (403)
T PLN02953 143 RSRGIAKGMTPPPRYVSRVCSVICALMPILTLYFGNIDILVTSAAFLVAIALLVQRGSPRFAQLSSTMFGLFYCGYLPCF 222 (403)
T ss_pred HhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 98888655433444433333233344444433333222222222233333445566666889999999999999999999
Q ss_pred HHHHhhccCcccc-----------ccCCCcccccccCCCcchhhHHHHHHHHHHHHHHhhHHHHHHhhhcCCccccccCC
Q 015272 241 WVKLRCGLSAPAL-----------NTGIGVSWPILLGGLPHWTVGLVATLISFSSIIAADTFAFIGGKAFGRTQLTSISP 309 (410)
Q Consensus 241 li~Lr~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~gl~~~Ll~~~~vw~sDtgAYfvGr~fGKhkL~~ISP 309 (410)
|+++|+....++. +...+..|+..+++..+|..++.+++++++++|+||++||++||.|||||+++|||
T Consensus 223 ~v~Lr~~~~~~~~~~~~~~~f~~l~~~~~~~~p~~~~~~~~~~~Gl~~~l~~~~~vw~~Di~AY~~G~~fGk~kl~~ISP 302 (403)
T PLN02953 223 WVKLRCGLAAPALNTGKLSPFISLKFSIGKTWPILLGGQAHWTVGLVATLISFSGVIATDTFAFLGGKAFGRTPLTSISP 302 (403)
T ss_pred HHHHhhccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCC
Confidence 9999952211111 11123456665666667878899999999999999999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCCcchhhhhhH
Q 015272 310 KKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDS 389 (410)
Q Consensus 310 kKTwEG~iGGil~avl~~~l~~~~~~~~~~~~~~~llg~~~~v~~~iGDL~ES~iKR~aGVKDSG~lLPGHGGvLDR~DS 389 (410)
||||||++||++++++++.+++.++.++..+++.+++|++++++|++|||+||++||++||||||+++|||||+|||+||
T Consensus 303 kKTwEG~iGGil~~vlv~~l~~~~l~~~~~~~~~i~lg~li~~~~~~GDL~eS~iKR~~gVKDsG~liPGHGGiLDR~DS 382 (403)
T PLN02953 303 KKTWEGTFVGLVGCIAITILLSKSLSWPQSLFSSIAFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDS 382 (403)
T ss_pred CCeeeeehhHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhhHHHHHHHhHccCCCCccccCCCCCcchhhHhH
Confidence 99999999999999999998887776666677788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCC
Q 015272 390 YIFTGALAYSFVKTFLPLYGV 410 (410)
Q Consensus 390 lLFaaPv~y~~~~~~~~~~~~ 410 (410)
++|++|++|++++..+|+|||
T Consensus 383 llfaaPv~y~~~~~~~~~~~~ 403 (403)
T PLN02953 383 YIFTGALAYSFIKTSLKLYGV 403 (403)
T ss_pred HHHHHHHHHHHHHHhccccCC
Confidence 999999999999999999997
No 2
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=100.00 E-value=4.5e-59 Score=458.27 Aligned_cols=266 Identities=27% Similarity=0.323 Sum_probs=180.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHH-HHH
Q 015272 115 QLRKRIGFGLGIGIFVGGVVL-AGGWVFTVCFAAAVFVGAREYFELVRSRGIAAGMTPPPRYVSRVCSVICAFMPI-LTL 192 (410)
Q Consensus 115 ~L~~RIiTalvl~~lv~~i~~-~g~~~f~ll~~~l~~lgl~E~~~l~~~~g~~~~~~~~~~~~~~v~~~~~~~i~~-~~~ 192 (410)
||++|++||++++++++..++ .|++.|.+++++++++|+|||++|.+.++... ........+........ ...
T Consensus 1 ml~~Riita~vlv~l~l~~i~~~~~~~f~~l~~~~~~l~~~E~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 75 (285)
T PRK11624 1 MLKYRLITAFILIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFASRSQ-----RVWLAVLCGLLLALMLFLLPE 75 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccch-----hHHHHHHHHHHHHHHHHHHHH
Confidence 588999999987766666554 46799999999999999999999987654321 11111111111111100 000
Q ss_pred hhhh--hHHH----HHHHHHH-HHHHHHHhcCC-ch-hhh--HHHHHHHHHHHhHHHHHHHHHhhccCccccccCCCccc
Q 015272 193 YFGQ--IDVS----VTFAAFV-VAMALLLQRGN-PR-FAQ--LSSTIFGLFYCGYLPCFWVKLRCGLSAPALNTGIGVSW 261 (410)
Q Consensus 193 ~~~~--~~~~----~~~~~f~-~~~~~~~~~~~-~~-~~~--~~~tl~Gi~Yi~~~~s~li~Lr~~~~~~~~~~~~g~~~ 261 (410)
+... .... .....++ ++......+.+ .. ..+ ...+.+|.+|+...+.+++.+|... .+. +..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~-~~~-~~~~---- 149 (285)
T PRK11624 76 YHHNIHQPLVEISLWASLGWWIVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWH-YDE-NHYS---- 149 (285)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHccc-ccc-cccC----
Confidence 1000 0000 0011111 11111222221 11 222 3456788888766555566677410 000 0000
Q ss_pred ccccCCCcchhhHHHHHHHHHHHHHHhhHHHHHHhhhcCCcccc-ccCCCCCchhhHHHHHHHHHHHHHHHHHhccCcch
Q 015272 262 PILLGGLPHWTVGLVATLISFSSIIAADTFAFIGGKAFGRTQLT-SISPKKTWEGTIVGLGGCIATTVVLSKIFCWPRYL 340 (410)
Q Consensus 262 ~~~~~~~~~~~~gl~~~Ll~~~~vw~sDtgAYfvGr~fGKhkL~-~ISPkKTwEG~iGGil~avl~~~l~~~~~~~~~~~ 340 (410)
+. .+++++++++|+|||+|||+||.||||||+ +|||||||||++||++++++++.+++.+...+.++
T Consensus 150 -------G~-----~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~ 217 (285)
T PRK11624 150 -------GA-----WWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAP 217 (285)
T ss_pred -------CH-----HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccH
Confidence 11 223567788999999999999999999996 99999999999999999999998887665433456
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHH
Q 015272 341 PSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKT 403 (410)
Q Consensus 341 ~~~~llg~~~~v~~~iGDL~ES~iKR~aGVKDSG~lLPGHGGvLDR~DSlLFaaPv~y~~~~~ 403 (410)
+++++++++++++||+|||+||++||++||||||+++|||||+|||+||++|++|++|++...
T Consensus 218 ~~~~~~~~~~~~~~~~GDL~ES~lKR~~gVKDSG~llPGHGGiLDR~DSLlfa~P~~~~~~~~ 280 (285)
T PRK11624 218 VTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLL 280 (285)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhccCCCCCcCcCCCcCcchhhHhHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999999999999999999999998876554
No 3
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=100.00 E-value=5.7e-49 Score=382.98 Aligned_cols=257 Identities=31% Similarity=0.437 Sum_probs=178.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHh-
Q 015272 115 QLRKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAREYFELVRSRGIAAGMTPPPRYVSRVCSVICAFMPILTLY- 193 (410)
Q Consensus 115 ~L~~RIiTalvl~~lv~~i~~~g~~~f~ll~~~l~~lgl~E~~~l~~~~g~~~~~~~~~~~~~~v~~~~~~~i~~~~~~- 193 (410)
|+++|++++.++.......++.++++|.++..++++.+.||++++.+.+.... +........ ....+....
T Consensus 1 ~~~~r~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~ 72 (265)
T COG0575 1 MLKQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAG-----PLILGLPID---LGLVLLDGRR 72 (265)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-----hHHHHHHHH---HHHHHHHHHH
Confidence 57899999987765555555555999999999999999999999988765431 111111111 111111111
Q ss_pred -hhhhH-HHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhHHHHHHHHHhhccCccccccCCCcccccccCCCcch
Q 015272 194 -FGQID-VSVTFAAFVVAMALLLQRGNPRFAQLSSTIFGLFYCGYLPCFWVKLRCGLSAPALNTGIGVSWPILLGGLPHW 271 (410)
Q Consensus 194 -~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~tl~Gi~Yi~~~~s~li~Lr~~~~~~~~~~~~g~~~~~~~~~~~~~ 271 (410)
.+... ........+....... .....+.+......+..|.++.+......|....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 129 (265)
T COG0575 73 LLGDGKETLLGFLLGFLLGLVLL-GVIYYLSDSLFKLFGLLYVGVGLLALLPFRLGVL---------------------- 129 (265)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHhhh----------------------
Confidence 11111 1111111111110111 1112234444566778888776655555543100
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHhhhcCCcccc-ccCCCCCchhhHHHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHH
Q 015272 272 TVGLVATLISFSSIIAADTFAFIGGKAFGRTQLT-SISPKKTWEGTIVGLGGCIATTVVLSKIFC-WPRYLPSAIVFGFL 349 (410)
Q Consensus 272 ~~gl~~~Ll~~~~vw~sDtgAYfvGr~fGKhkL~-~ISPkKTwEG~iGGil~avl~~~l~~~~~~-~~~~~~~~~llg~~ 349 (410)
..|..+++++++++|+||++|||+||+|||||++ +|||||||||++||++++++++........ .+.+++..++++++
T Consensus 130 ~~g~~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~ 209 (265)
T COG0575 130 YSGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLL 209 (265)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 0133455678899999999999999999999996 899999999999999999998888776654 34456778899999
Q ss_pred HHHHHhHHHHHHHHhhhcCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Q 015272 350 NFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKTF 404 (410)
Q Consensus 350 ~~v~~~iGDL~ES~iKR~aGVKDSG~lLPGHGGvLDR~DSlLFaaPv~y~~~~~~ 404 (410)
+++++|+|||+||++||++||||||+++|||||+|||+||++++ ++|++..++
T Consensus 210 ~~l~~~lGDL~eS~iKR~~gvKDsg~liPGHGGilDR~Dsl~~~--~~~~~~~~~ 262 (265)
T COG0575 210 LVLTSQLGDLFESYIKRLLGIKDSGWLIPGHGGILDRFDSLLFV--AVYLFLLLF 262 (265)
T ss_pred HHHHHHHhhHHHHHHHHccCCCCcCCCCCCcCcccccHhhHHHH--HHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 666666543
No 4
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=100.00 E-value=1.5e-48 Score=371.93 Aligned_cols=258 Identities=33% Similarity=0.514 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhh
Q 015272 117 RKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAREYFELVRSRGIAAGMTPPPRYVSRVCSVICAFMPILTLYFGQ 196 (410)
Q Consensus 117 ~~RIiTalvl~~lv~~i~~~g~~~f~ll~~~l~~lgl~E~~~l~~~~g~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~ 196 (410)
|||++|++++.++++..++.+++.+..++.++..++.+|++++.+.++.+.. ...................+...
T Consensus 1 k~Ri~t~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 75 (259)
T PF01148_consen 1 KQRIITAIILIPIFILLLFLGPWYFLLLVAVIIFLGFWELFRLFRIKSRSKF-----RLIIRILSWIFFLILFLFFYLRW 75 (259)
T ss_pred CEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccch-----hhHHHHHHHHHHHHHHHHhhhhH
Confidence 6899999988888888888899999999999999999999999887654321 11111111111111111111111
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhHHHHHHHHHhhccCccccccCCCcccccccCCCcchhhHHH
Q 015272 197 IDVSVTFAAFVVAMALLLQRGNPRFAQLSSTIFGLFYCGYLPCFWVKLRCGLSAPALNTGIGVSWPILLGGLPHWTVGLV 276 (410)
Q Consensus 197 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~tl~Gi~Yi~~~~s~li~Lr~~~~~~~~~~~~g~~~~~~~~~~~~~~~gl~ 276 (410)
.................+...+.+.++...+.++.+|+++.......... . .+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-----------~~~-----~ 130 (259)
T PF01148_consen 76 LIPYFFATILIIALLLFLVLGERRIRRIISTLFGLIYFGIFLLLLLIFFW---------F-----------FGP-----P 130 (259)
T ss_pred HHHHHHHHHHHHhhhHHhhhcchHHHHHHHHHHHHHHHhHHHHHHHhhhh---------c-----------cch-----H
Confidence 11111111111122222222234566777888899888876522211110 0 011 1
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHh
Q 015272 277 ATLISFSSIIAADTFAFIGGKAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFCWP-RYLPSAIVFGFLNFFGSV 355 (410)
Q Consensus 277 ~~Ll~~~~vw~sDtgAYfvGr~fGKhkL~~ISPkKTwEG~iGGil~avl~~~l~~~~~~~~-~~~~~~~llg~~~~v~~~ 355 (410)
..+..+.++|.+|++||++||.||||+.+++||||||||++||++++++++.+...+...+ .+++..+++++++++.++
T Consensus 131 ~~~~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 210 (259)
T PF01148_consen 131 LALIGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEA 210 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH
Confidence 2235667899999999999999999944589999999999999999999988887766543 567888899999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Q 015272 356 FGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKTF 404 (410)
Q Consensus 356 iGDL~ES~iKR~aGVKDSG~lLPGHGGvLDR~DSlLFaaPv~y~~~~~~ 404 (410)
+|||+||.+||++||||||+++|||||+|||+||+++++|++|+++++|
T Consensus 211 ~gdl~~S~~KR~~~iKD~g~lipghGg~lDr~d~~l~~~~~~~~~~~~f 259 (259)
T PF01148_consen 211 FGDLFESAIKRDAGIKDSGNLIPGHGGILDRFDSLLFAAPVFYILLKIF 259 (259)
T ss_pred HHHHHHHHHHHhhhcccccccccCcCCcccchHhHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999874
No 5
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=100.00 E-value=2.5e-47 Score=360.39 Aligned_cols=262 Identities=29% Similarity=0.434 Sum_probs=206.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 015272 112 KASQLRKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAREYFELVRSRGIAAGMTPPPRYVSRVCSVICAFMPILT 191 (410)
Q Consensus 112 ~~s~L~~RIiTalvl~~lv~~i~~~g~~~f~ll~~~l~~lgl~E~~~l~~~~g~~~~~~~~~~~~~~v~~~~~~~i~~~~ 191 (410)
...|++.||-+.+++++++..++..|.|.-..+++.+++.+++||.++...+--+ ....+ .++..+|+.+
T Consensus 32 ~~~~l~~RI~aWW~mv~i~~~~~~l~~~~~l~lF~~iSflalrEfltl~ptr~~d--------~~~l~--~~Y~~lplqy 101 (303)
T COG4589 32 KIDELNLRIRAWWVMVIIFSLVISLPRWMTLTLFGLISFLALREFLTLIPTRRPD--------HLALV--WFYWVLPLQY 101 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccCC--------ccchh--hhhhhhhHhH
Confidence 4678999999999998888888888999999999999999999999998765322 11111 3466788776
Q ss_pred Hhh--hhhH---HHHHHHHHHHHHHHHHhcCCc-hh-hhHHHHHHHHHHHhHHHHHHHHHhhccCccccccCCCcccccc
Q 015272 192 LYF--GQID---VSVTFAAFVVAMALLLQRGNP-RF-AQLSSTIFGLFYCGYLPCFWVKLRCGLSAPALNTGIGVSWPIL 264 (410)
Q Consensus 192 ~~~--~~~~---~~~~~~~f~~~~~~~~~~~~~-~~-~~~~~tl~Gi~Yi~~~~s~li~Lr~~~~~~~~~~~~g~~~~~~ 264 (410)
++. +.+. ..+..+.|+++.......+++ .| .+.+.-.+|.+-..+..|+...+-. .+..+...|
T Consensus 102 ~~i~i~wy~mf~ifipvY~fL~Lp~l~~L~gdt~gFl~~~s~i~wg~mltvfcish~~~llt---L~~~~~~~~------ 172 (303)
T COG4589 102 LLIGIDWYEMFIIFIPVYGFLILPILMVLVGDTSGFLHRVSAIQWGWMLTVFCISHAAYLLT---LDITNFQGG------ 172 (303)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhHHHHHHHHHHHHHHHhhHHHhh---CCCCCcCcc------
Confidence 543 2222 234556666665555555554 34 4456667888888888888765543 111111111
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHhhHHHHHHhhhcCCcccc-ccCCCCCchhhHHHHHHHHHHHHHHHHHhccCcchHHH
Q 015272 265 LGGLPHWTVGLVATLISFSSIIAADTFAFIGGKAFGRTQLT-SISPKKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSA 343 (410)
Q Consensus 265 ~~~~~~~~~gl~~~Ll~~~~vw~sDtgAYfvGr~fGKhkL~-~ISPkKTwEG~iGGil~avl~~~l~~~~~~~~~~~~~~ 343 (410)
.+ ++++.++++..||+.+|..||.|||||.+ ++||||||||++||++.+++++.++.++ .|.+++++
T Consensus 173 ---------~l-l~iflli~~q~nDV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~~l--Tp~~~lqa 240 (303)
T COG4589 173 ---------AL-LVIFLLILTELNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILGLL--TPLNTLQA 240 (303)
T ss_pred ---------ch-HHHHHHHHHHHHHHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHHHh--CCCcHHHH
Confidence 12 33556778999999999999999999996 9999999999999999999999888743 47889999
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Q 015272 344 IVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKTF 404 (410)
Q Consensus 344 ~llg~~~~v~~~iGDL~ES~iKR~aGVKDSG~lLPGHGGvLDR~DSlLFaaPv~y~~~~~~ 404 (410)
++.|+++++.|.+||++.|++||+.||||||+++|||||+|||+||++||||+++++.+++
T Consensus 241 ~~~~~~I~l~GF~GdlvmSaiKRd~gvKD~G~li~GHGGiLDR~DSL~FtAPiffh~~ry~ 301 (303)
T COG4589 241 LLAGLLIGLSGFCGDLVMSAIKRDVGVKDSGKLLPGHGGILDRVDSLIFTAPIFFHFIRYC 301 (303)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccCCCCccHHHHHHHHHHhhhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999874
No 6
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=100.00 E-value=9.7e-46 Score=370.70 Aligned_cols=317 Identities=28% Similarity=0.298 Sum_probs=232.5
Q ss_pred CCCcceeeccCCCCCccceeeccCCceeee-eccccccchhhHHHHHhhcCCCCCCCCcccccccCCCc-cccccCCcCC
Q 015272 29 SSNKILIFTQKQPPKLNVRIVFNRPKFTLR-VRQTGIDTNRRMISAVARAEPDHLDDGNLKEGIDNGHK-LVVSEKSVSD 106 (410)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 106 (410)
..+| +.++.|+ -|. |.+-||+++ .|..|++..||.+++++++|.+++++++++++++.++. +|++++...=
T Consensus 35 ~~~~--~~~~~s~----~~~-p~~~~~~l~~~~~~~~n~~~R~i~t~~mi~~f~~i~~~g~~~~~~lv~~iQi~~~~Eii 107 (432)
T KOG1440|consen 35 RTRK--IRPPVSK----DRT-PVRLKPLLSALRSRWKNFFRRGILTLAMISGFFLIIYMGHKYLMALVLVIQIKCFKEII 107 (432)
T ss_pred cccc--cCCCCCC----CCC-cccchhhhhhCCCCceeeehHHHHHHHHHhccEEEEecCcchhhhhhhhHHHHHHHHHH
Confidence 4455 5555553 123 456688884 88999999999999999999999999999999999966 8888774431
Q ss_pred ccchhHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHH
Q 015272 107 SGSQQKASQLRKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAREYFELVRSRGIAAGMTPPPRYVSRVCSVICAF 186 (410)
Q Consensus 107 s~~~~~~s~L~~RIiTalvl~~lv~~i~~~g~~~f~ll~~~l~~lgl~E~~~l~~~~g~~~~~~~~~~~~~~v~~~~~~~ 186 (410)
+ .+++.++.++|..+.++....+....+.+.+.+....+..++..-.|++++++..++ ..+..|+...+..++.+
T Consensus 108 ~-i~~~~~~~k~lp~f~~l~w~fl~t~~yf~yg~~~~~yf~~v~~~~~~l~~LV~yh~f----i~f~lYi~gf~~FV~sL 182 (432)
T KOG1440|consen 108 A-IGRKVSREKDLPWFRLLNWYFLLTVNYFVYGEILVAYFAAVFIRDRFLFFLVRYHRF----ICFALYLIGFVSFVLSL 182 (432)
T ss_pred H-HhhccccccCCceeehhhhHHHHHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHhccc----ccHHHHHHHHHHHHHHh
Confidence 1 355666778888888777666667777778877777777778899999999985433 34455554444333333
Q ss_pred HH-HHHHhhhhhHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHhHHHHHHHHHhhccCccccccCCCccccccc
Q 015272 187 MP-ILTLYFGQIDVSVTFAAFVVAMALLLQRGNPRFAQLSSTIFGLFYCGYLPCFWVKLRCGLSAPALNTGIGVSWPILL 265 (410)
Q Consensus 187 i~-~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~tl~Gi~Yi~~~~s~li~Lr~~~~~~~~~~~~g~~~~~~~ 265 (410)
.+ .+..++++.++.-..+++++.. ++++ ++. ..
T Consensus 183 ~k~~yk~QFg~fawtH~sll~Vv~q----------------------------s~l~-i~N--------~f--------- 216 (432)
T KOG1440|consen 183 RKGIYKLQFGLFAWTHMSLLLVVTQ----------------------------SHLV-IQN--------LF--------- 216 (432)
T ss_pred hhhhhHHHHHhHHHHHHHHHHHHHH----------------------------HHHH-Hhc--------cc---------
Confidence 33 2222333333221111111111 1111 111 00
Q ss_pred CCCcchhhHHHHHHHHHHHHHHhhHHHHHHhhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHHHHhcc---------
Q 015272 266 GGLPHWTVGLVATLISFSSIIAADTFAFIGGKAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFCW--------- 336 (410)
Q Consensus 266 ~~~~~~~~gl~~~Ll~~~~vw~sDtgAYfvGr~fGKhkL~~ISPkKTwEG~iGGil~avl~~~l~~~~~~~--------- 336 (410)
.|+.+.+....++..||..||.+|..|||+|+.++||||||||++||.++.++.+.+++.+++.
T Consensus 217 -------eG~fWFl~P~~lvicnDi~AY~~Gf~fGktPLiklSPKKTwEGFiGg~~~tvv~~i~~s~vL~~~~~~~cp~~ 289 (432)
T KOG1440|consen 217 -------EGLFWFLVPAGLVICNDIFAYLFGFFFGKTPLIKLSPKKTWEGFIGGTFGTVVFGILFSYVLGHYTFFTCPVK 289 (432)
T ss_pred -------chHHHHHHHhHhheeCchHHHHHhhhhcCCcccccCCCCccchhhchhHHHHHHHHHHHHHhccCeEEEeccc
Confidence 1334445677788899999999999999999999999999999999988888777777654310
Q ss_pred -----------------------C---------------cchHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCC
Q 015272 337 -----------------------P---------------RYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIP 378 (410)
Q Consensus 337 -----------------------~---------------~~~~~~~llg~~~~v~~~iGDL~ES~iKR~aGVKDSG~lLP 378 (410)
| ...++.+.+|++.++.|.+||++||++||+++|||+|+.||
T Consensus 290 d~~t~~~~~c~p~~~F~~~~y~lp~~i~~~i~~k~is~~p~~~Hsial~~faS~iaPFGGFfASgfKRafKiKDFG~~IP 369 (432)
T KOG1440|consen 290 DFSTTPLLSCEPKPLFEPQTYGLPGVISITIRLKSISLPPFQFHSIALGLFASFIAPFGGFFASGFKRAFKIKDFGDSIP 369 (432)
T ss_pred ccCCCCccccCcccccCcceecCCceeeeeccccccccchHHHHHHHHHHHHHhhccchhHHHHHhHHhhcCCcccccCC
Confidence 0 02467889999999999999999999999999999999999
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHHHHhcccCC
Q 015272 379 GHGGILDRVDSYIFTGALAYSFVKTFLPLYGV 410 (410)
Q Consensus 379 GHGGvLDR~DSlLFaaPv~y~~~~~~~~~~~~ 410 (410)
||||++||+|+.++++-++|.|.+-++..+++
T Consensus 370 GHGGI~DR~DCQ~lma~Fay~Yi~SFI~~~~~ 401 (432)
T KOG1440|consen 370 GHGGITDRMDCQILMATFAYVYIQSFIRLPGV 401 (432)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhccCCH
Confidence 99999999999999999999999988876653
No 7
>PLN02594 phosphatidate cytidylyltransferase
Probab=100.00 E-value=4.5e-45 Score=362.94 Aligned_cols=162 Identities=33% Similarity=0.435 Sum_probs=139.7
Q ss_pred chhhhHHHHHHHHHHHhHHHHHHHHHhhccCccccccCCCcccccccCCCcchhhHHHHHHHHHHHHHHhhHHHHHHhhh
Q 015272 219 PRFAQLSSTIFGLFYCGYLPCFWVKLRCGLSAPALNTGIGVSWPILLGGLPHWTVGLVATLISFSSIIAADTFAFIGGKA 298 (410)
Q Consensus 219 ~~~~~~~~tl~Gi~Yi~~~~s~li~Lr~~~~~~~~~~~~g~~~~~~~~~~~~~~~gl~~~Ll~~~~vw~sDtgAYfvGr~ 298 (410)
..+.+.+.+.++++|+++..++++. . ..+ |+.++++.+++||+||++||++||.
T Consensus 94 ~qf~~~a~t~~~llyV~~~~~~ii~-n---------i~~----------------G~~w~~l~~~lV~~nDi~AY~~G~~ 147 (342)
T PLN02594 94 YQFGQYAWTHMILIVVFTQSSFTVA-N---------IFE----------------GIFWFLLPASLIVINDIAAYLFGFF 147 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH-H---------ccc----------------cHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4678999999999999998887752 1 111 3344567788999999999999999
Q ss_pred cCCccccccCCCCCchhhHHHHHHHHHHHHHHHHHhcc------C-----------------------------------
Q 015272 299 FGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFCW------P----------------------------------- 337 (410)
Q Consensus 299 fGKhkL~~ISPkKTwEG~iGGil~avl~~~l~~~~~~~------~----------------------------------- 337 (410)
||||||++|||||||||++||++++++++.+++.++.. |
T Consensus 148 fGk~kL~~iSPkKTwEGfiGg~i~T~i~~~~~~~~~~~~~~~~cp~~~~~~~~~~C~p~~~f~~~~~~~p~~~~~~~~~~ 227 (342)
T PLN02594 148 FGRTPLIKLSPKKTWEGFIGASVTTLISAFYLANIMGKFQWLTCPRKDLSTGWLECDPDPLFKPETYPLPGWIPRWFPWK 227 (342)
T ss_pred hcCCCCCccCCCCchhhhHHHHHHHHHHHHHHHHHhcccccccCCccccccCcccCCCccccccccccCCcccccccccc
Confidence 99999999999999999999999999999988765310 0
Q ss_pred -cc----hHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhc
Q 015272 338 -RY----LPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKTFLP 406 (410)
Q Consensus 338 -~~----~~~~~llg~~~~v~~~iGDL~ES~iKR~aGVKDSG~lLPGHGGvLDR~DSlLFaaPv~y~~~~~~~~ 406 (410)
.+ .++++++|++++++|++||++||++||++||||+|+++|||||+|||+||+++++|++|++...++.
T Consensus 228 ~i~~~~~~~h~l~l~l~aSl~a~fGdlfaS~~KR~~~IKDfG~~IPGHGGilDRfDs~l~~~~f~y~y~~~fi~ 301 (342)
T PLN02594 228 EVSVLPVQWHALSLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFIV 301 (342)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHccCCCcccCccCCCccccccccHHHHHHHHHHHHHHHHhc
Confidence 01 4678899999999999999999999999999999999999999999999999999999988887763
No 8
>PRK04032 hypothetical protein; Provisional
Probab=99.96 E-value=1e-29 Score=229.30 Aligned_cols=101 Identities=30% Similarity=0.457 Sum_probs=88.4
Q ss_pred hhhc-CCccccccCCCCCchhhHHHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCC
Q 015272 296 GKAF-GRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFCWP-RYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDS 373 (410)
Q Consensus 296 Gr~f-GKhkL~~ISPkKTwEG~iGGil~avl~~~l~~~~~~~~-~~~~~~~llg~~~~v~~~iGDL~ES~iKR~aGVKDS 373 (410)
||+| ++||+ +||||||||++||++++++++.+++++...+ .++++++++|++++++||+|||+||++||++||||
T Consensus 23 g~~~~dg~~i--iSP~KTwEG~iGGv~~~~l~~~~~~~~~~~~~~~~~~~~~~g~li~v~~~~GDL~eS~iKR~~gVKD- 99 (159)
T PRK04032 23 GKTFVDGRRI--LGDGKTWRGLIGGILFGTLVGLIQNLLVPAYIGALGVAIILAFLLSFGALLGDMLGSFIKRRLGLER- 99 (159)
T ss_pred CCcCCCCCee--CCCCCcHHHhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCC-
Confidence 6777 55555 9999999999999999999999987765432 24566889999999999999999999999999999
Q ss_pred CCCCCCCcchhhhhhHHHHHHHHHHHHHHH
Q 015272 374 GSLIPGHGGILDRVDSYIFTGALAYSFVKT 403 (410)
Q Consensus 374 G~lLPGHGGvLDR~DSlLFaaPv~y~~~~~ 403 (410)
|+++| +|||+||++|++|++|++..+
T Consensus 100 g~~iP----iLDRiDsll~a~p~~~l~~~l 125 (159)
T PRK04032 100 GAPAP----LLDQLDFVVGALLFAYLVAPV 125 (159)
T ss_pred cCccc----chhhhHHHHHHHHHHHHHHhh
Confidence 88888 999999999999999987764
No 9
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=99.32 E-value=5.6e-12 Score=116.32 Aligned_cols=91 Identities=27% Similarity=0.399 Sum_probs=74.2
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCC
Q 015272 307 ISPKKTWEGTIVGLGGCIATTVVLSKIFC-------WPRYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPG 379 (410)
Q Consensus 307 ISPkKTwEG~iGGil~avl~~~l~~~~~~-------~~~~~~~~~llg~~~~v~~~iGDL~ES~iKR~aGVKDSG~lLPG 379 (410)
.=.+|||||+++|++++++++.+.+.... ...+....+..|++.++.+.+||+.-|.+||+.|++....
T Consensus 44 lGdgKTwrG~i~gvl~g~l~g~i~~~l~~~~~~~~~~~~~~~~~~~~g~ll~~gamlGDl~~SFIKRRlgi~~G~~---- 119 (175)
T PF01864_consen 44 LGDGKTWRGFIGGVLAGTLVGIIQGLLLPLSIFALYFYGSLFFNLLLGFLLGLGAMLGDLPGSFIKRRLGIPRGAP---- 119 (175)
T ss_pred cCCCCeEEeeeHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCCc----
Confidence 56899999999999999999888765422 1223456678899999999999999999999999996654
Q ss_pred CcchhhhhhHHHHHHHHHHHHHH
Q 015272 380 HGGILDRVDSYIFTGALAYSFVK 402 (410)
Q Consensus 380 HGGvLDR~DSlLFaaPv~y~~~~ 402 (410)
--++|.+|+++.+..+.|.+..
T Consensus 120 -ap~lDQldf~lgall~~~~~~~ 141 (175)
T PF01864_consen 120 -APGLDQLDFVLGALLLLYLFAP 141 (175)
T ss_pred -CccchhHHHHHHHHHHHHHHHh
Confidence 4678999999999887776543
No 10
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=97.93 E-value=2.8e-05 Score=74.26 Aligned_cols=79 Identities=22% Similarity=0.157 Sum_probs=57.4
Q ss_pred HHHHHHHhhHHHHHHhhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHHHHhc-c-C----cchHHHHHHHHHHHHHH
Q 015272 281 SFSSIIAADTFAFIGGKAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFC-W-P----RYLPSAIVFGFLNFFGS 354 (410)
Q Consensus 281 ~~~~vw~sDtgAYfvGr~fGKhkL~~ISPkKTwEG~iGGil~avl~~~l~~~~~~-~-~----~~~~~~~llg~~~~v~~ 354 (410)
++++-|. |+.|-.+||+||+.|.+ +.|||+|.|.+|...++++.++++-.++. . | .+|- .-+-....+.|
T Consensus 162 ~~Llswc-Dt~AdtvGRKfG~~tpk-~aknKSlAGSIgaft~Gvf~c~vy~gyf~s~g~~~l~~s~r--~~~~~l~l~~g 237 (269)
T KOG4453|consen 162 ISLLSWC-DTIADTVGRKFGSTTPK-YAKNKSLAGSIGAFTFGVFICIVYLGYFSSLGPDYLHMSWR--ETTLQLVLMVG 237 (269)
T ss_pred HHHHHHh-hhHHHHHhhhccccCCC-cCCCccccchHHHHHHHHHHHHHHHHHHhccCcchhccccc--cchHHHHHHHH
Confidence 4456675 99999999999999854 67999999999999999999988765543 1 1 1220 11112344567
Q ss_pred hHHHHHHHH
Q 015272 355 VFGDLTESM 363 (410)
Q Consensus 355 ~iGDL~ES~ 363 (410)
.++-++||+
T Consensus 238 ~vaAlvEsl 246 (269)
T KOG4453|consen 238 MVAALVESL 246 (269)
T ss_pred HHHHHHhcC
Confidence 778889986
No 11
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=97.18 E-value=0.0014 Score=62.70 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=38.6
Q ss_pred HHHhhHHHHHHhhhcCCccccccCCCCCchhhHHHHHHHHHHHHHH
Q 015272 285 IIAADTFAFIGGKAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVL 330 (410)
Q Consensus 285 vw~sDtgAYfvGr~fGKhkL~~ISPkKTwEG~iGGil~avl~~~l~ 330 (410)
.-..|+.|=.+|+.+|||| ...++|||+||++.+++++.+++.++
T Consensus 123 l~~GD~lAsiiG~~~G~~~-~~~~~~KSleGSla~fi~~~l~~~~~ 167 (216)
T COG0170 123 LALGDGLASIIGKRYGRHK-RILGNGKSLEGSLAFFIASFLVLLVL 167 (216)
T ss_pred HHHhhHHHHHhCcccCccc-cccCCCCchhhhHHHHHHHHHHHHHH
Confidence 3458999999999999993 25889999999999999998887654
No 12
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=95.65 E-value=0.024 Score=59.38 Aligned_cols=46 Identities=33% Similarity=0.421 Sum_probs=40.2
Q ss_pred HHHHhhHHHHHHhhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHH
Q 015272 284 SIIAADTFAFIGGKAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLS 331 (410)
Q Consensus 284 ~vw~sDtgAYfvGr~fGKhkL~~ISPkKTwEG~iGGil~avl~~~l~~ 331 (410)
.+=..||.|=.+|+++||+|-++- |||.||.+.+++..+++..+.-
T Consensus 418 alGiGDTmASiiG~r~G~~RW~~T--kKTlEGT~Afivs~~iv~~ll~ 463 (510)
T KOG2468|consen 418 ALGIGDTMASIIGKRYGRIRWSGT--KKTLEGTLAFIVSSFIVCLLLL 463 (510)
T ss_pred eeccchHHHHHHhhhhcceecCCC--cceeehhhHHHHHHHHHHHHHH
Confidence 445689999999999999999853 9999999999999998877765
No 13
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=92.62 E-value=0.1 Score=54.24 Aligned_cols=103 Identities=27% Similarity=0.321 Sum_probs=80.4
Q ss_pred CCchhhhHHHHHHHHHHHhHHHHHHHHHhhccCccccccCCCcccccccCCCcchhhHHHHHHHHHHHHHHhhHHHHHHh
Q 015272 217 GNPRFAQLSSTIFGLFYCGYLPCFWVKLRCGLSAPALNTGIGVSWPILLGGLPHWTVGLVATLISFSSIIAADTFAFIGG 296 (410)
Q Consensus 217 ~~~~~~~~~~tl~Gi~Yi~~~~s~li~Lr~~~~~~~~~~~~g~~~~~~~~~~~~~~~gl~~~Ll~~~~vw~sDtgAYfvG 296 (410)
+..+...+..+.++++||...++|+...+++ ..|.++...+..|+...++ +++.+++.+++.-|-++|+.+-.-+
T Consensus 214 N~feG~fWFl~P~~lvicnDi~AY~~Gf~fG-ktPLiklSPKKTwEGFiGg----~~~tvv~~i~~s~vL~~~~~~~cp~ 288 (432)
T KOG1440|consen 214 NLFEGLFWFLVPAGLVICNDIFAYLFGFFFG-KTPLIKLSPKKTWEGFIGG----TFGTVVFGILFSYVLGHYTFFTCPV 288 (432)
T ss_pred cccchHHHHHHHhHhheeCchHHHHHhhhhc-CCcccccCCCCccchhhch----hHHHHHHHHHHHHHhccCeEEEecc
Confidence 3334445566778999999999999999986 5677888888888754443 2455667778888999999999999
Q ss_pred hhcCCccccccCCCCCchhhHHHHHHHH
Q 015272 297 KAFGRTQLTSISPKKTWEGTIVGLGGCI 324 (410)
Q Consensus 297 r~fGKhkL~~ISPkKTwEG~iGGil~av 324 (410)
+.+++....+.+|||+||+..=++.+.+
T Consensus 289 ~d~~t~~~~~c~p~~~F~~~~y~lp~~i 316 (432)
T KOG1440|consen 289 KDFSTTPLLSCEPKPLFEPQTYGLPGVI 316 (432)
T ss_pred cccCCCCccccCcccccCcceecCCcee
Confidence 9999998768999999999877655443
No 14
>COG1836 Predicted membrane protein [Function unknown]
Probab=88.17 E-value=28 Score=34.23 Aligned_cols=78 Identities=18% Similarity=0.222 Sum_probs=53.5
Q ss_pred HHHHHhhHHHHHHhhhcCCccc-----cccCC----CCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 015272 283 SSIIAADTFAFIGGKAFGRTQL-----TSISP----KKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFG 353 (410)
Q Consensus 283 ~~vw~sDtgAYfvGr~fGKhkL-----~~ISP----kKTwEG~iGGil~avl~~~l~~~~~~~~~~~~~~~llg~~~~v~ 353 (410)
+.+--+||.|==+|+.+||++. .|+-| .=|++|-+.|++++.+.+++...+.. . +.. . -+.+..+
T Consensus 128 vAta~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~~~l~~~-~-~~~-~---v~~vtla 201 (247)
T COG1836 128 VATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALLSYLVGY-I-SLG-G---VLSVTLA 201 (247)
T ss_pred HHHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHHHHHHHh-c-ccc-h---hHHHHHH
Confidence 3567899999999999998754 14444 47899999999999988776643322 1 111 1 1234566
Q ss_pred HhHHHHHHHHhhh
Q 015272 354 SVFGDLTESMIKR 366 (410)
Q Consensus 354 ~~iGDL~ES~iKR 366 (410)
|.+|-..+|.+=-
T Consensus 202 Gf~G~~iDSllGA 214 (247)
T COG1836 202 GFAGTNIDSLLGA 214 (247)
T ss_pred HHHhhhHHHHhhH
Confidence 7778888887643
No 15
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=84.42 E-value=42 Score=32.63 Aligned_cols=79 Identities=22% Similarity=0.246 Sum_probs=56.7
Q ss_pred HHHHHHHhhHHHHHHhhhcCCccc---c--ccCCC----CCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 015272 281 SFSSIIAADTFAFIGGKAFGRTQL---T--SISPK----KTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNF 351 (410)
Q Consensus 281 ~~~~vw~sDtgAYfvGr~fGKhkL---~--~ISPk----KTwEG~iGGil~avl~~~l~~~~~~~~~~~~~~~llg~~~~ 351 (410)
.-+..-.+||.|==.|+..++++. + ++.|+ =|++|.+.|++++.+++.........+ .... .++.
T Consensus 112 ~s~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~~~~~~~~--~~~~----~~~~ 185 (226)
T PF01940_consen 112 GSIAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVAFLLGLIS--FPLV----LLIA 185 (226)
T ss_pred HHHHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHHHHHHccc--hHHH----HHHH
Confidence 345677899999999999987654 2 45554 689999999999999888876554222 2221 2347
Q ss_pred HHHhHHHHHHHHhh
Q 015272 352 FGSVFGDLTESMIK 365 (410)
Q Consensus 352 v~~~iGDL~ES~iK 365 (410)
+.|.+|.+++|.+=
T Consensus 186 ~~G~~Gsl~DSlLG 199 (226)
T PF01940_consen 186 LAGFLGSLLDSLLG 199 (226)
T ss_pred HHHHHHHHHHHHhh
Confidence 77888888888864
No 16
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=83.63 E-value=3.1 Score=35.82 Aligned_cols=73 Identities=19% Similarity=0.333 Sum_probs=45.4
Q ss_pred HHHHHhhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHh--HHHHHHHHhhhcC
Q 015272 291 FAFIGGKAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSV--FGDLTESMIKRDA 368 (410)
Q Consensus 291 gAYfvGr~fGKhkL~~ISPkKTwEG~iGGil~avl~~~l~~~~~~~~~~~~~~~llg~~~~v~~~--iGDL~ES~iKR~a 368 (410)
.||+-++.-|+. .. ++..||.+.|.++-.+.. .+. ++++|. ....+.|..+++.|+ ++++..+.+.|+.
T Consensus 33 mA~LR~~Y~g~~-~~----~~llea~mCg~la~~~~~-~l~-~~g~~~--~~a~~~g~~IGflGvd~ir~~~~~~i~kK~ 103 (107)
T TIGR01594 33 IAYLRIRYMGGK-FK----RKLIDALMCAAIALVAAS-ALD-FLGLPT--SLSPFLGGMIGFVGVDKIREFAKRFINKKA 103 (107)
T ss_pred HHHHHHHHcCcc-HH----HHHHHHHHHHHHHHHHHH-HHH-HcCCcH--HHHHHHhhheeeccHHHHHHHHHHHHHhhc
Confidence 355555554433 11 144688888877743333 222 334443 334456677777664 9999999999999
Q ss_pred CCCC
Q 015272 369 GVKD 372 (410)
Q Consensus 369 GVKD 372 (410)
|++|
T Consensus 104 g~~~ 107 (107)
T TIGR01594 104 GVDD 107 (107)
T ss_pred CCCC
Confidence 9998
No 17
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=80.50 E-value=15 Score=35.98 Aligned_cols=82 Identities=22% Similarity=0.329 Sum_probs=54.8
Q ss_pred HHHHHHhhHHHHHHhhhcCCccc---c--ccCCC----CCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Q 015272 282 FSSIIAADTFAFIGGKAFGRTQL---T--SISPK----KTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFF 352 (410)
Q Consensus 282 ~~~vw~sDtgAYfvGr~fGKhkL---~--~ISPk----KTwEG~iGGil~avl~~~l~~~~~~~~~~~~~~~llg~~~~v 352 (410)
-...-.+||.|==.|+..+|++. . ++.|+ =|+||.+.+++++.+++... .... +..+ ..+ +++.+
T Consensus 118 s~A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~~~-~~~~-~~~~-~~~---~~~~~ 191 (237)
T TIGR00297 118 SVATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALLG-YLLG-LISF-KGI---LFSTL 191 (237)
T ss_pred HHHHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHHHH-HHHh-hcch-HHH---HHHHH
Confidence 34567899999999999998553 1 45554 68999999999999887444 2222 1111 112 34556
Q ss_pred HHhHHHHHHHHhhhcCC
Q 015272 353 GSVFGDLTESMIKRDAG 369 (410)
Q Consensus 353 ~~~iGDL~ES~iKR~aG 369 (410)
.|.+|-+++|.+==..+
T Consensus 192 aG~~Gsl~DSlLGAtlQ 208 (237)
T TIGR00297 192 AAFAGTNLDSLLGATLE 208 (237)
T ss_pred HHHHHHHHHHHHhHHHh
Confidence 78889999997643333
No 18
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=50.94 E-value=21 Score=37.62 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=31.5
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCCc
Q 015272 339 YLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHG 381 (410)
Q Consensus 339 ~~~~~~llg~~~~v~~~iGDL~ES~iKR~aGVKDSG~lLPGHG 381 (410)
+++.+++.|++.++.. =+..+.+|+..++.|+=..+|.||
T Consensus 279 ~p~~A~iiGii~g~i~---~~a~~~lk~~l~~DD~ld~f~vHG 318 (409)
T COG0004 279 SPWGALIIGLIAGVIC---YFAVKLLKKKLGVDDALDVFGVHG 318 (409)
T ss_pred CcHHHHHHHHHHHHHH---HHHHHHHHHhcCCCCcccceeccc
Confidence 3566677777765555 455889999999999999999996
No 19
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.58 E-value=58 Score=28.40 Aligned_cols=29 Identities=17% Similarity=-0.038 Sum_probs=22.1
Q ss_pred cCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 015272 307 ISPKKTWEGTIVGLGGCIATTVVLSKIFC 335 (410)
Q Consensus 307 ISPkKTwEG~iGGil~avl~~~l~~~~~~ 335 (410)
++|-|=-.=+|+|++-++..++++-++++
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56666667788888888888888877765
No 20
>COG4944 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.09 E-value=46 Score=31.68 Aligned_cols=56 Identities=20% Similarity=0.076 Sum_probs=40.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHhhh
Q 015272 311 KTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIKR 366 (410)
Q Consensus 311 KTwEG~iGGil~avl~~~l~~~~~~~~~~~~~~~llg~~~~v~~~iGDL~ES~iKR 366 (410)
-|..|+..|++++-+.+.+++..-..+.........++.+.+.+++|-+..+.+-|
T Consensus 157 P~lAGfaaGL~aGgi~a~~Ya~hC~e~~~~Fva~WYtlgi~~lgviGalagr~~lr 212 (213)
T COG4944 157 PTLAGFAAGLAAGGIGATVYAWHCTEDGPLFVATWYTLGILLLGVIGALAGRRLLR 212 (213)
T ss_pred chHHHHHHHHhcccHHHHhhhhcCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 68999999999998888888764433333444556677777888888887766544
No 21
>PRK10847 hypothetical protein; Provisional
Probab=41.96 E-value=17 Score=34.67 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhHHHHHHhhhcCCccc
Q 015272 279 LISFSSIIAADTFAFIGGKAFGRTQL 304 (410)
Q Consensus 279 Ll~~~~vw~sDtgAYfvGr~fGKhkL 304 (410)
+...+.....|+.+|..||.+|++.+
T Consensus 76 ~~a~~Ga~lG~~i~Y~lGr~~G~~~l 101 (219)
T PRK10847 76 ALMLIAAIVGDAVNYTIGRLFGEKLF 101 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 34567788999999999999998765
No 22
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=34.31 E-value=1.3e+02 Score=23.04 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=6.7
Q ss_pred chhHHHhhHHHH
Q 015272 109 SQQKASQLRKRI 120 (410)
Q Consensus 109 ~~~~~s~L~~RI 120 (410)
++++.++++.=.
T Consensus 11 ~~~k~~E~~~fl 22 (56)
T PF06796_consen 11 KSTKRSELKAFL 22 (56)
T ss_pred cchhHHHHHHHH
Confidence 455666766444
No 23
>PF10190 Tmemb_170: Putative transmembrane protein 170; InterPro: IPR019334 This entry represents a group of putative transmembrane proteins conserved from nematodes to humans. The protein is only approximately 130 amino acids in length. The function is unknown.
Probab=33.88 E-value=2.3e+02 Score=24.48 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=41.0
Q ss_pred HHHhhHHHHHHhhhcCCccccccCC-CCCchhhHHHHHHHHHHHHHHHHHh---ccCcchHHHHHHHHHHHHH
Q 015272 285 IIAADTFAFIGGKAFGRTQLTSISP-KKTWEGTIVGLGGCIATTVVLSKIF---CWPRYLPSAIVFGFLNFFG 353 (410)
Q Consensus 285 vw~sDtgAYfvGr~fGKhkL~~ISP-kKTwEG~iGGil~avl~~~l~~~~~---~~~~~~~~~~llg~~~~v~ 353 (410)
+..-=..+-.+=..+.|||..+.=| -=-.-|.++.+.++.+.+.+.+..+ +...+.++..+.|+.-.+.
T Consensus 20 ~~vh~~A~liA~~~lRkhk~~~f~pi~~l~mg~l~p~~~G~itSa~IA~vY~a~~~~M~~~~a~vwGvgqt~~ 92 (105)
T PF10190_consen 20 IFVHLIAGLIAFFTLRKHKFGRFIPIVILLMGVLGPLTGGSITSAAIAGVYRAAGFRMSTWEAMVWGVGQTIL 92 (105)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHH
Confidence 3344456666777889999864222 2334566666666666655555433 2356677777777665443
No 24
>PRK10666 ammonium transporter; Provisional
Probab=28.24 E-value=79 Score=33.61 Aligned_cols=54 Identities=26% Similarity=0.422 Sum_probs=39.5
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCCc--chhhhhhHHHHHHH
Q 015272 339 YLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHG--GILDRVDSYIFTGA 395 (410)
Q Consensus 339 ~~~~~~llg~~~~v~~~iGDL~ES~iKR~aGVKDSG~lLPGHG--GvLDR~DSlLFaaP 395 (410)
+++.++++|++.++...++- ..+||..++-|.-..+|=|| |++-=+=.-+|+.+
T Consensus 302 ~p~~A~iiG~vag~v~~~~~---~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~~ 357 (428)
T PRK10666 302 GVGGALIIGVVAGLAGLWGV---TMLKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAAS 357 (428)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCcCccHhhhHhHHHHHHHHHHhhch
Confidence 35778888888888877663 45888899999999999996 55554444445443
No 25
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=26.91 E-value=53 Score=31.08 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhHHHHHHhhhcCCcccc
Q 015272 279 LISFSSIIAADTFAFIGGKAFGRTQLT 305 (410)
Q Consensus 279 Ll~~~~vw~sDtgAYfvGr~fGKhkL~ 305 (410)
+...+.....|...|+.||.+|++.+.
T Consensus 61 ~~~~lga~lGd~i~Y~iGr~~G~~~l~ 87 (208)
T COG0586 61 LVATLGALLGDLISYWIGRRFGRKLLR 87 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcHHHHH
Confidence 345677889999999999999987663
No 26
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=26.29 E-value=55 Score=34.45 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=56.8
Q ss_pred HHhhHHHHHHhhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHhh
Q 015272 286 IAADTFAFIGGKAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIK 365 (410)
Q Consensus 286 w~sDtgAYfvGr~fGKhkL~~ISPkKTwEG~iGGil~avl~~~l~~~~~~~~~~~~~~~llg~~~~v~~~iGDL~ES~iK 365 (410)
-++=..++++.+...| +.|+--...|.+.|+++....+ + ..+++.++++|++.++...++- ..+|
T Consensus 237 a~g~l~~~~~~~~~~g----k~~~~~~~nG~LAGLVaita~a-------~-~v~p~~A~viG~iag~~~~~~~---~~l~ 301 (403)
T TIGR00836 237 AAGGLTWLLIDWLKHG----KPTLLGACNGILAGLVAITPGC-------G-VVTPWGAIIIGLVAGVLCYLAV---SKLK 301 (403)
T ss_pred HHHHHHHHHHHHHhcC----CCCHHHHHhhhhhhheeecCCC-------C-CCCHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3444455566555432 3455556666666665432211 1 1246778888888888777664 4578
Q ss_pred hcCCCCCCCCCCCCCc--chhhhhhHHHHH
Q 015272 366 RDAGVKDSGSLIPGHG--GILDRVDSYIFT 393 (410)
Q Consensus 366 R~aGVKDSG~lLPGHG--GvLDR~DSlLFa 393 (410)
|+.++-|.-..+|=|| |++-=+=.-+|+
T Consensus 302 ~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa 331 (403)
T TIGR00836 302 KKLKIDDPLDAFAVHGVGGIWGLIATGLFA 331 (403)
T ss_pred HHcCCCCCcccchhhhhhHHHHHHHHHHhc
Confidence 8899999999999886 454444333443
No 27
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=25.68 E-value=85 Score=33.08 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=50.7
Q ss_pred HHhhHHHHHHhhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHhh
Q 015272 286 IAADTFAFIGGKAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIK 365 (410)
Q Consensus 286 w~sDtgAYfvGr~fGKhkL~~ISPkKTwEG~iGGil~avl~~~l~~~~~~~~~~~~~~~llg~~~~v~~~iGDL~ES~iK 365 (410)
-+.=..+++..+...| +.|+--...|.+.|+++....+ - ..+++.++++|++.++...++-- ++
T Consensus 251 a~g~l~~~~~~~~~~g----k~~~~~~~nG~LAGLVaITa~~----~----~v~p~~A~iiG~iag~v~~~~~~----~~ 314 (404)
T TIGR03644 251 AGGAIAALLLTKLLFG----KADLTMVLNGALAGLVAITAEP----L----TPSPLAATLIGAVGGVIVVFSIV----LL 314 (404)
T ss_pred HHHHHHHHHHHHHHcC----CCCHHHHHHHHHhhhhhhcccc----C----CCCHHHHHHHHHHHHHHHHHHHH----HH
Confidence 3455556666655422 2444455666666665532111 1 12467788899998888876653 34
Q ss_pred hcCCCCCCCCCCCCCc
Q 015272 366 RDAGVKDSGSLIPGHG 381 (410)
Q Consensus 366 R~aGVKDSG~lLPGHG 381 (410)
|+.++-|.-..+|=||
T Consensus 315 ~~~~iDD~~~~~~vHg 330 (404)
T TIGR03644 315 DKLKIDDPVGAISVHG 330 (404)
T ss_pred HhCCCCCCcCchHhhh
Confidence 5699999999999997
No 28
>COG5547 Small integral membrane protein [Function unknown]
Probab=24.48 E-value=2.3e+02 Score=21.99 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=22.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 015272 114 SQLRKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAR 154 (410)
Q Consensus 114 s~L~~RIiTalvl~~lv~~i~~~g~~~f~ll~~~l~~lgl~ 154 (410)
+..|.||+-+++-.++.+ .++.=+.+-.+++.+++.+|.+
T Consensus 5 k~fkypIIgglvglliAi-li~t~GfwKtilviil~~lGv~ 44 (62)
T COG5547 5 KKFKYPIIGGLVGLLIAI-LILTFGFWKTILVIILILLGVY 44 (62)
T ss_pred HHhccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 456789998875443333 3333345555555555555554
No 29
>PF09335 SNARE_assoc: SNARE associated Golgi protein; InterPro: IPR015414 This is a entry contains SNARE associated Golgi proteins. The yeast member of this family (P36164 from SWISSPROT) localises with the t-SNARE Tlg2 [].
Probab=23.28 E-value=54 Score=27.27 Aligned_cols=26 Identities=27% Similarity=0.519 Sum_probs=20.8
Q ss_pred HHHHHHHHhhHHHHHHhhhcCCcccc
Q 015272 280 ISFSSIIAADTFAFIGGKAFGRTQLT 305 (410)
Q Consensus 280 l~~~~vw~sDtgAYfvGr~fGKhkL~ 305 (410)
+..+.....|..+|..||.+|++.+.
T Consensus 22 ~~~~g~~~g~~~~y~lgr~~~~~~~~ 47 (123)
T PF09335_consen 22 IATLGAVLGSLLAYLLGRYFGRRRLR 47 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45567789999999999999965543
No 30
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=22.83 E-value=1.9e+02 Score=28.22 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH---hHHHHHHHH
Q 015272 317 IVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGS---VFGDLTESM 363 (410)
Q Consensus 317 iGGil~avl~~~l~~~~~~~~~~~~~~~llg~~~~v~~---~iGDL~ES~ 363 (410)
+|.+++.++++++++.+++ +||.++++|+..++.. ++|-..|..
T Consensus 32 l~a~l~~~~v~v~ig~l~~---~~~~~~i~gi~~g~l~am~vl~rra~ra 78 (224)
T PF13829_consen 32 LGAFLGPIAVFVLIGLLFG---SWWYWLIIGILLGLLAAMIVLSRRAQRA 78 (224)
T ss_pred HHHHHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666665543 3455555555444332 466666544
No 31
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=22.62 E-value=99 Score=30.57 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=8.1
Q ss_pred HhhHHHHHHHHHHHH
Q 015272 114 SQLRKRIGFGLGIGI 128 (410)
Q Consensus 114 s~L~~RIiTalvl~~ 128 (410)
++.++|++ |+++++
T Consensus 176 ~~~~~Riv-G~~LAv 189 (254)
T PF07857_consen 176 SPRKKRIV-GIILAV 189 (254)
T ss_pred ccccchhH-hHHHHH
Confidence 44556774 665544
No 32
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.14 E-value=2.2e+02 Score=24.87 Aligned_cols=34 Identities=18% Similarity=0.088 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHH--Hh-hhHHHHHHHHHHH
Q 015272 116 LRKRIGFGLGIGIFVGGVV--LA-GGWVFTVCFAAAV 149 (410)
Q Consensus 116 L~~RIiTalvl~~lv~~i~--~~-g~~~f~ll~~~l~ 149 (410)
+-.-.|+|+++++.+.+++ +. ..+|+.+++.++.
T Consensus 48 lssefIsGilVGa~iG~llD~~agTsPwglIv~lllG 84 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLG 84 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4455677766665554432 22 2344444444443
No 33
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=20.76 E-value=95 Score=25.47 Aligned_cols=26 Identities=23% Similarity=0.532 Sum_probs=20.0
Q ss_pred HhhHHHHH---HhhhcCCcccc--ccCCCCC
Q 015272 287 AADTFAFI---GGKAFGRTQLT--SISPKKT 312 (410)
Q Consensus 287 ~sDtgAYf---vGr~fGKhkL~--~ISPkKT 312 (410)
.+-.-||. .|+..||+++. ..=||.|
T Consensus 12 lgG~IA~~GD~iG~kvGKkrlslFgLRPr~T 42 (79)
T PF11283_consen 12 LGGLIAYLGDRIGSKVGKKRLSLFGLRPRYT 42 (79)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhhcCCCccc
Confidence 44444554 69999999997 7889998
Done!