Query 015272
Match_columns 410
No_of_seqs 144 out of 1349
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 09:41:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b9w_A Ammonium transporter fa 34.1 21 0.00072 36.2 2.9 43 339-381 258-301 (407)
2 2b2h_A AMT-1, ammonium transpo 32.4 21 0.00072 36.0 2.5 39 339-381 268-306 (399)
3 3hd6_A Ammonium transporter RH 22.7 1E+02 0.0035 31.9 5.7 55 339-393 307-364 (490)
4 1u7g_A Probable ammonium trans 20.4 33 0.0011 34.4 1.4 40 339-381 280-319 (385)
5 2kog_A Vesicle-associated memb 19.4 1.5E+02 0.005 24.7 5.0 10 95-104 64-73 (119)
6 3udc_A Small-conductance mecha 17.7 4.3E+02 0.015 24.5 8.6 38 345-383 101-143 (285)
7 2vv5_A MSCS, small-conductance 15.7 6.3E+02 0.022 23.4 9.2 97 281-383 38-144 (286)
8 3ro2_B Peptide of nuclear mito 15.6 48 0.0016 20.7 0.7 13 75-87 9-21 (28)
9 1kvd_A SMK toxin; halotolerant 13.8 85 0.0029 22.6 1.8 25 306-330 18-42 (63)
10 3hnn_A Putative diflavin flavo 13.7 74 0.0025 28.9 1.9 26 359-385 211-236 (262)
No 1
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=34.09 E-value=21 Score=36.17 Aligned_cols=43 Identities=28% Similarity=0.247 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHHhHHH-HHHHHhhhcCCCCCCCCCCCCCc
Q 015272 339 YLPSAIVFGFLNFFGSVFGD-LTESMIKRDAGVKDSGSLIPGHG 381 (410)
Q Consensus 339 ~~~~~~llg~~~~v~~~iGD-L~ES~iKR~aGVKDSG~lLPGHG 381 (410)
+++.++++|++.++...+|- .....+|+..++-|+-..+|=||
T Consensus 258 ~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHg 301 (407)
T 3b9w_A 258 GPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHG 301 (407)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecch
Confidence 46778899999999988886 34567889999999999999885
No 2
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=32.37 E-value=21 Score=36.05 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCCc
Q 015272 339 YLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHG 381 (410)
Q Consensus 339 ~~~~~~llg~~~~v~~~iGDL~ES~iKR~aGVKDSG~lLPGHG 381 (410)
+++.++++|++.++...++- .+|++.++-|.-..+|=||
T Consensus 268 ~p~~A~iiG~iag~i~~~~~----~l~~kl~iDD~l~a~~vHg 306 (399)
T 2b2h_A 268 DVKGAIVIGLVAGIVCYLAM----DFRIKKKIDESLDAWAIHG 306 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHH----HHHHHTTCCCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCCCCceeccc
Confidence 46778899999999888876 6888899999988888774
No 3
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=22.65 E-value=1e+02 Score=31.89 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHHHHHhHHH-HHHHHhhhcCCCCCCCCCCCCCc--chhhhhhHHHHH
Q 015272 339 YLPSAIVFGFLNFFGSVFGD-LTESMIKRDAGVKDSGSLIPGHG--GILDRVDSYIFT 393 (410)
Q Consensus 339 ~~~~~~llg~~~~v~~~iGD-L~ES~iKR~aGVKDSG~lLPGHG--GvLDR~DSlLFa 393 (410)
+++.++++|++.++.+.+|- .....+|+..++-|.-...+=|| |++--+=.-+|+
T Consensus 307 ~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 307 MPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccchHHhhHHHHHHHHHHHHHh
Confidence 46778899999999988884 33457888999999998888885 565544444444
No 4
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=20.40 E-value=33 Score=34.42 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=29.3
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCCc
Q 015272 339 YLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHG 381 (410)
Q Consensus 339 ~~~~~~llg~~~~v~~~iGDL~ES~iKR~aGVKDSG~lLPGHG 381 (410)
+++.++++|++.++...++- ..+|++.++.|.-+.+|=||
T Consensus 280 ~p~~A~iiG~iag~i~~~~~---~~l~~~l~iDD~l~a~~vHg 319 (385)
T 1u7g_A 280 GVGGALIIGVVAGLAGLWGV---TMLKRLLRVDDPCDVFGVHG 319 (385)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HHHHHHHCSCCGGGHHHHHH
T ss_pred CHHHHHHHHhHHHHHHHHHH---HHHHHhCCCCCCCCCEeecc
Confidence 46777888888887776664 34777788999877766663
No 5
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=19.41 E-value=1.5e+02 Score=24.69 Aligned_cols=10 Identities=10% Similarity=0.082 Sum_probs=4.0
Q ss_pred CccccccCCc
Q 015272 95 HKLVVSEKSV 104 (410)
Q Consensus 95 ~~~~~~~~~~ 104 (410)
.+|..+.|..
T Consensus 64 d~L~~KTe~L 73 (119)
T 2kog_A 64 SELDDRADAL 73 (119)
T ss_dssp CCCCSCCSCC
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 6
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=17.70 E-value=4.3e+02 Score=24.53 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=24.5
Q ss_pred HHHHHHHHHHh--HHHHHHH---HhhhcCCCCCCCCCCCCCcch
Q 015272 345 VFGFLNFFGSV--FGDLTES---MIKRDAGVKDSGSLIPGHGGI 383 (410)
Q Consensus 345 llg~~~~v~~~--iGDL~ES---~iKR~aGVKDSG~lLPGHGGv 383 (410)
+.|+.++++.| ++|++.. ++-|.+.+.|.=.+ .|+-|.
T Consensus 101 ~~g~aig~a~q~~l~n~~~Gi~i~~~~pf~vGD~I~i-~~~~G~ 143 (285)
T 3udc_A 101 IGSLAIGFGAQNLVKDMISGFFIIFEDQFSVGDYVTI-NGISGT 143 (285)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHTTSCCTTCEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCCEEEE-CCEEEE
Confidence 34555555544 8888876 45788999997654 444443
No 7
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=15.71 E-value=6.3e+02 Score=23.41 Aligned_cols=97 Identities=11% Similarity=0.016 Sum_probs=50.0
Q ss_pred HHHHHHHhhHHHHHHhhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHHH---HhccCc-chH-HHHHHHHHHHHHHh
Q 015272 281 SFSSIIAADTFAFIGGKAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSK---IFCWPR-YLP-SAIVFGFLNFFGSV 355 (410)
Q Consensus 281 ~~~~vw~sDtgAYfvGr~fGKhkL~~ISPkKTwEG~iGGil~avl~~~l~~~---~~~~~~-~~~-~~~llg~~~~v~~~ 355 (410)
+++..|.......+..+.+.|++.. +|+..++.-++-.++..+.... .++.+. +.. ..-+.|+.++++.|
T Consensus 38 ~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~~g~aig~a~q 112 (286)
T 2vv5_A 38 IIVGLIIARMISNAVNRLMISRKID-----ATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLVVGLALQ 112 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSC-----HHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666666666655544332 4556666555443332222211 123222 222 22344555555554
Q ss_pred --HHHHHHH---HhhhcCCCCCCCCCCCCCcch
Q 015272 356 --FGDLTES---MIKRDAGVKDSGSLIPGHGGI 383 (410)
Q Consensus 356 --iGDL~ES---~iKR~aGVKDSG~lLPGHGGv 383 (410)
+.|++.. ++-|.+.+.|.=.+ .|+-|.
T Consensus 113 ~~l~n~~sGi~i~~~~pf~vGD~I~i-~g~~G~ 144 (286)
T 2vv5_A 113 GSLSNLAAGVLLVMFRPFRAGEYVDL-GGVAGT 144 (286)
T ss_dssp HHHHHHHHHHHHHTTCSSCTTCEEES-SSCEEE
T ss_pred HHHHHHHhhhHHHhcCCccCCCEEEE-CCEEEE
Confidence 7787766 46789999987543 455554
No 8
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=15.59 E-value=48 Score=20.67 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=9.1
Q ss_pred hhcCCCCCCCCcc
Q 015272 75 ARAEPDHLDDGNL 87 (410)
Q Consensus 75 ~~~~~~~~~~~~~ 87 (410)
-+-||||++|=+.
T Consensus 9 cqdepeqlddw~r 21 (28)
T 3ro2_B 9 CQDEPEQLDDWNR 21 (28)
T ss_dssp CCCCCCCCCCTTT
T ss_pred ccCCcccchhHHH
Confidence 3679999776543
No 9
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=13.84 E-value=85 Score=22.65 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=20.4
Q ss_pred ccCCCCCchhhHHHHHHHHHHHHHH
Q 015272 306 SISPKKTWEGTIVGLGGCIATTVVL 330 (410)
Q Consensus 306 ~ISPkKTwEG~iGGil~avl~~~l~ 330 (410)
--|-.-|..|..||+++++.++.+.
T Consensus 18 gcsgaatfgglaggivgciaagila 42 (63)
T 1kvd_A 18 GCSGAATFGGLAGGIVGCIAAGILA 42 (63)
T ss_dssp CCSSCCCCTTCCSHHHHHHHHHHHH
T ss_pred CCccchhcccccchHHHHHHHHHHH
Confidence 4677889999999999998876554
No 10
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=13.73 E-value=74 Score=28.91 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=18.5
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCcchhh
Q 015272 359 LTESMIKRDAGVKDSGSLIPGHGGILD 385 (410)
Q Consensus 359 L~ES~iKR~aGVKDSG~lLPGHGGvLD 385 (410)
-....++|-... |.-.++||||.+.+
T Consensus 211 ~~~~sl~~l~~L-~~~~i~PgHG~~~~ 236 (262)
T 3hnn_A 211 HVEAALEKISDL-QVRLYAVGHGPLVR 236 (262)
T ss_dssp HHHHHHHHHTTS-CCSEEEESSSSEES
T ss_pred HHHHHHHHHhCC-CCCEEECCCCcccc
Confidence 334455666655 45789999999986
Done!