Query 015272
Match_columns 410
No_of_seqs 144 out of 1349
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 09:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015272.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015272hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p97a1 d.157.1.12 (A:1-200) H 34.0 6.7 0.00049 32.7 1.5 30 362-391 162-196 (200)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 26.3 10 0.00074 35.6 1.4 63 308-381 255-317 (383)
3 d1vmea2 d.157.1.3 (A:1-250) RO 20.4 21 0.0015 29.8 2.2 33 359-392 208-241 (250)
4 d1bh9b_ a.22.1.3 (B:) TAF(II)2 19.2 18 0.0013 27.1 1.3 26 355-380 49-74 (89)
5 d2j7za1 d.9.1.1 (A:1-67) Strom 19.1 20 0.0014 25.2 1.3 15 15-31 2-16 (67)
6 d1qh5a_ d.157.1.2 (A:) Glyoxal 16.9 21 0.0015 31.3 1.3 31 354-384 147-177 (260)
7 d2q0ia1 d.157.1.14 (A:1-298) Q 16.8 14 0.00099 32.2 -0.0 21 365-385 206-226 (298)
8 d1mqoa_ d.157.1.1 (A:) Zn meta 14.6 32 0.0024 28.4 2.0 23 361-386 188-210 (221)
9 d2gmna1 d.157.1.1 (A:29-292) Z 14.0 27 0.0019 29.7 1.2 32 356-389 192-223 (264)
10 d1m2xa_ d.157.1.1 (A:) Zn meta 12.8 19 0.0014 29.2 -0.1 23 361-386 180-202 (219)
No 1
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}
Probab=34.01 E-value=6.7 Score=32.65 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=22.7
Q ss_pred HHhhhcCCCCCCCCCCCCCcch-----hhhhhHHH
Q 015272 362 SMIKRDAGVKDSGSLIPGHGGI-----LDRVDSYI 391 (410)
Q Consensus 362 S~iKR~aGVKDSG~lLPGHGGv-----LDR~DSlL 391 (410)
..+||-...+|.-.++||||.. -+|++.++
T Consensus 162 ~sl~rl~~l~~~~~i~pgHG~~~~~~~~~rl~~l~ 196 (200)
T d2p97a1 162 ASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELV 196 (200)
T ss_dssp HHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEECCCCchHhcCHHHHHHHHH
Confidence 4467777889999999999954 35777665
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=26.27 E-value=10 Score=35.62 Aligned_cols=63 Identities=25% Similarity=0.324 Sum_probs=40.0
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHhhhcCCCCCCCCCCCCCc
Q 015272 308 SPKKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHG 381 (410)
Q Consensus 308 SPkKTwEG~iGGil~avl~~~l~~~~~~~~~~~~~~~llg~~~~v~~~iGDL~ES~iKR~aGVKDSG~lLPGHG 381 (410)
|+-.+.+|.++|+++... .+ ...+++.+++.|++.++...++ -..+||..++-|--+.+|=||
T Consensus 255 ~~~~~~nG~LaGLVaita----~~----~~v~p~~A~~iG~i~g~i~~~~---~~~l~~~~~iDD~~~~~~vHg 317 (383)
T d1u7ga_ 255 SLLGACSGAIAGLVGVTP----AC----GYIGVGGALIIGVVAGLAGLWG---VTMLKRLLRVDDPCDVFGVHG 317 (383)
T ss_dssp CHHHHHHHHHHHHHHHTT----TT----TTSCHHHHHHHHHHHHHHHHHH---HHHHHHHHCSCCGGGHHHHHH
T ss_pred CHHHHHHHhhhhhhhccc----Cc----cccchhhHHHHHhhccHHHHHH---HHHHHhhcccccccceEeehh
Confidence 344455566666554221 11 1234567778888877777666 346788888999988888886
No 3
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=20.37 E-value=21 Score=29.82 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=20.7
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCcchh-hhhhHHHH
Q 015272 359 LTESMIKRDAGVKDSGSLIPGHGGIL-DRVDSYIF 392 (410)
Q Consensus 359 L~ES~iKR~aGVKDSG~lLPGHGGvL-DR~DSlLF 392 (410)
-....+||-... |...++||||-++ +.++.++=
T Consensus 208 ~~~~sl~~l~~l-~~~~I~PGHGpi~~~~~~~~i~ 241 (250)
T d1vmea2 208 YILEGAEKLSSL-KIKALLPGHGLIWKKDPQRLLN 241 (250)
T ss_dssp HHHHHHHHHHTS-CCSEEEESSSCBBSSCHHHHHH
T ss_pred HHHHHHHHHHCC-CCCEEECCCChhHhcCHHHHHH
Confidence 334456664444 4557999999887 34565553
No 4
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.21 E-value=18 Score=27.10 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=21.9
Q ss_pred hHHHHHHHHhhhcCCCCCCCCCCCCC
Q 015272 355 VFGDLTESMIKRDAGVKDSGSLIPGH 380 (410)
Q Consensus 355 ~iGDL~ES~iKR~aGVKDSG~lLPGH 380 (410)
.+||++|-+..=+-.-+|+|.|.|-|
T Consensus 49 FvGEiVE~A~~V~~~~~e~~PL~P~H 74 (89)
T d1bh9b_ 49 FVGEVVEEALDVCEKWGEMPPLQPKH 74 (89)
T ss_dssp HHHHHHHHHHHHHHHTTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcHH
Confidence 48999999987766677899999987
No 5
>d2j7za1 d.9.1.1 (A:1-67) Stromal cell-derived factor-1 (SDF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.06 E-value=20 Score=25.15 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=10.3
Q ss_pred ccccccccCCCCCCCCC
Q 015272 15 SLPLTSLNACPCRPSSN 31 (410)
Q Consensus 15 ~~~~~~~~~~~~~~~~~ 31 (410)
|+|+.-+ ||||++-+
T Consensus 2 PiSl~~R--c~cr~~~s 16 (67)
T d2j7za1 2 PVSLSYR--CPCRFFES 16 (67)
T ss_dssp CTTTCCS--CSCSSCBS
T ss_pred Ccchhhc--cchhhhhc
Confidence 4556655 79998765
No 6
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.87 E-value=21 Score=31.29 Aligned_cols=31 Identities=6% Similarity=0.147 Sum_probs=27.0
Q ss_pred HhHHHHHHHHhhhcCCCCCCCCCCCCCcchh
Q 015272 354 SVFGDLTESMIKRDAGVKDSGSLIPGHGGIL 384 (410)
Q Consensus 354 ~~iGDL~ES~iKR~aGVKDSG~lLPGHGGvL 384 (410)
|...++.+|..||-....|.-.+.||||--.
T Consensus 147 g~~~~l~~si~~~l~~Lp~~t~vypGH~y~~ 177 (260)
T d1qh5a_ 147 GTADEMCKALLEVLGRLPPDTRVYCGHEYTI 177 (260)
T ss_dssp CCHHHHHHHHHTTTTTSCTTCEEEESBCCHH
T ss_pred CchHHhhhhhhhHHhcCCcccEEeeccccCC
Confidence 3456889999999999999999999999764
No 7
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.76 E-value=14 Score=32.20 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=14.9
Q ss_pred hhcCCCCCCCCCCCCCcchhh
Q 015272 365 KRDAGVKDSGSLIPGHGGILD 385 (410)
Q Consensus 365 KR~aGVKDSG~lLPGHGGvLD 385 (410)
+|-...+|--.++||||++.+
T Consensus 206 ~~l~~l~~~~~i~PgHG~~~~ 226 (298)
T d2q0ia1 206 ERLQRLPTLLQLIPGHGGLLR 226 (298)
T ss_dssp HHHHTSSCCSEEEESSSCEEE
T ss_pred HHHHCCCCCCEEECCCCCccC
Confidence 554455555578999999874
No 8
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}
Probab=14.64 E-value=32 Score=28.40 Aligned_cols=23 Identities=35% Similarity=0.758 Sum_probs=16.4
Q ss_pred HHHhhhcCCCCCCCCCCCCCcchhhh
Q 015272 361 ESMIKRDAGVKDSGSLIPGHGGILDR 386 (410)
Q Consensus 361 ES~iKR~aGVKDSG~lLPGHGGvLDR 386 (410)
+.+.+|.. |-..++||||.+.||
T Consensus 188 ~~l~~~~~---~~~~viPgHG~~~~~ 210 (221)
T d1mqoa_ 188 ENVLKRYR---NINAVVPGHGEVGDK 210 (221)
T ss_dssp HHHHHHCC---SCSEEEESSSCCBCT
T ss_pred HHHHhhCC---CCCEEEeCCCCCCCH
Confidence 44555543 445799999999886
No 9
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]}
Probab=14.00 E-value=27 Score=29.74 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=19.4
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCCcchhhhhhH
Q 015272 356 FGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDS 389 (410)
Q Consensus 356 iGDL~ES~iKR~aGVKDSG~lLPGHGGvLDR~DS 389 (410)
..|+.+| +||-...+ --.++||||++.+.-+.
T Consensus 192 ~~~~~~s-l~~l~~l~-~d~v~pgHg~~~~~~~~ 223 (264)
T d2gmna1 192 VDDYRAT-FAKAKAMK-IDVLLGPHPEVYGMQAK 223 (264)
T ss_dssp HHHHHHH-HHHHHHSC-CSEEECSSGGGTTHHHH
T ss_pred HHHHHHH-HHHHHcCC-CCEEECCCCCccchHHH
Confidence 3444444 35444443 35799999998765543
No 10
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Probab=12.82 E-value=19 Score=29.19 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=15.8
Q ss_pred HHHhhhcCCCCCCCCCCCCCcchhhh
Q 015272 361 ESMIKRDAGVKDSGSLIPGHGGILDR 386 (410)
Q Consensus 361 ES~iKR~aGVKDSG~lLPGHGGvLDR 386 (410)
+++.++. .|.-.++||||.+.|+
T Consensus 180 ~~l~~~~---~~~~~i~pgHg~~~~~ 202 (219)
T d1m2xa_ 180 HNIQQKF---SGAQYVVAGHDDWKDQ 202 (219)
T ss_dssp HHHHHHT---TTCSEEEESBSCCCST
T ss_pred HHHHhhC---CCCcEEECCCCCccCh
Confidence 4444443 3556799999998875
Done!