BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015274
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
Query: 98 FVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSA 157
L++RGD F K+ NA+KAGA VL+ D+ ++ ++ P D +P+A
Sbjct: 292 IALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGF-PIELPNVD----------QMPAA 340
Query: 158 LIDKSFGETLK 168
I + G LK
Sbjct: 341 FISRKDGLLLK 351
>pdb|2Q14|A Chain A, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|B Chain B, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|C Chain C, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|D Chain D, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|E Chain E, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|F Chain F, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|G Chain G, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
pdb|2Q14|H Chain H, Crystal Structure Of Phosphohydrolase (Bt4208) From
Bacteroides Thetaiotaomicron Vpi-5482 At 2.20 A
Resolution
Length = 410
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 88 FKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAK 147
F P L NF+ +D D + ALKVW+ + L I + ++ E I +
Sbjct: 271 FHNNPDCLENFIQLDDNDIWTALKVWSNHPDKVLSTLSLGXINRNIFKVENSAEPIGEDR 330
Query: 148 YIENITIPSALIDKSFGETLKKA 170
I+ +T+ I + G TL +A
Sbjct: 331 -IKELTLQ---ISQQLGITLSEA 349
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 129 IEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVP 188
IE DTPEE S A Y+ T+P A D G + E V+L W+E
Sbjct: 781 IELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIF---ENNVVHLMWQEPKE 837
Query: 189 HPDDRVEYEL-WTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYT 233
V YE+ + DE CD F E + L G Y+
Sbjct: 838 PNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGNYS 883
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
Query: 129 IEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVP 188
IE DTPEE S A Y+ T+P A D G + E V+L W+E
Sbjct: 762 IELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIF---ENNVVHLMWQEPKE 818
Query: 189 HPDDRVEYEL-WTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYT 233
V YE+ + DE CD F E + L G Y+
Sbjct: 819 PNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGNYS 864
>pdb|4FFH|A Chain A, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFH|B Chain B, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFH|C Chain C, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFH|D Chain D, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Sucrose
pdb|4FFI|A Chain A, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
pdb|4FFI|B Chain B, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
pdb|4FFI|C Chain C, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
pdb|4FFI|D Chain D, Crystal Structure Of Levan Fructotransferase D54n Mutant
From Arthrobacter Ureafaciens In Complex With Levanbiose
Length = 492
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 191 DDRVEYELWTNSNDECGVKCDMLMAF-VKEFRGPAQILEKGGYTQFTPHYITW----YCP 245
DD + + S D G+ M A+ + G E+ TP ++ W Y
Sbjct: 207 DDGTRHWVLAASMDAYGIGLPMTYAYWTGTWDG-----EQFHADDLTPQWLDWGWDWYAA 261
Query: 246 MTFTL-----SRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLR 288
+T+ +++ +N+ +Y A D D S GY G++ ++ LR
Sbjct: 262 VTWPSIDAPETKRLAIAWMNNWKYAARDVPTDASDGYNGQNSIVRELR 309
>pdb|4FFG|A Chain A, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
pdb|4FFG|B Chain B, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
pdb|4FFG|C Chain C, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
pdb|4FFG|D Chain D, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens In Complex With Dfa-Iv
Length = 492
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 191 DDRVEYELWTNSNDECGVKCDMLMAF-VKEFRGPAQILEKGGYTQFTPHYITW----YCP 245
DD + + S D G+ M A+ + G E+ TP ++ W Y
Sbjct: 207 DDGTRHWVLAASMDAYGIGLPMTYAYWTGTWDG-----EQFHADDLTPQWLDWGWDWYAA 261
Query: 246 MTFTL-----SRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLR 288
+T+ +++ +N+ +Y A D D S GY G++ ++ LR
Sbjct: 262 VTWPSIDAPETKRLAIAWMNNWKYAARDVPTDASDGYNGQNSIVRELR 309
>pdb|4FFF|A Chain A, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
pdb|4FFF|B Chain B, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
pdb|4FFF|C Chain C, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
pdb|4FFF|D Chain D, Crystal Structure Of Levan Fructotransferase From
Arthrobacter Ureafaciens
Length = 490
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 191 DDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITW----YCPM 246
DD + + S D G+ M A+ Q TP ++ W Y +
Sbjct: 207 DDGTRHWVLAASMDAYGIGLPMTYAYWTGTWDGEQFHAD----DLTPQWLDWGWDWYAAV 262
Query: 247 TFTL-----SRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLR 288
T+ +++ +N+ +Y A D D S GY G++ ++ LR
Sbjct: 263 TWPSIDAPETKRLAIAWMNNWKYAARDVPTDASDGYNGQNSIVRELR 309
>pdb|1KFI|A Chain A, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFI|B Chain B, Crystal Structure Of The Exocytosis-Sensitive
Phosphoprotein, Pp63PARAFUSIN (PHOSPHOGLUCOMUTASE) FROM
Paramecium
pdb|1KFQ|A Chain A, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
pdb|1KFQ|B Chain B, Crystal Structure Of Exocytosis-Sensitive Phosphoprotein,
Pp63PARAFUSIN (PHOSPHOGLUCOMUTSE) FROM PARAMECIUM. OPEN
Form
Length = 572
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 62 GSMAGAVTYPKENRKGCREFGDFGISFKAKPGA 94
G+ G + + G +E GDFGI F + GA
Sbjct: 115 GNCIGGIILTASHNPGGKEHGDFGIKFNVRTGA 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,441,310
Number of Sequences: 62578
Number of extensions: 521545
Number of successful extensions: 1077
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1073
Number of HSP's gapped (non-prelim): 9
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)