Query 015274
Match_columns 410
No_of_seqs 291 out of 1293
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:45:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02125 PA_VSR PA_VSR: Proteas 100.0 1.4E-28 3E-33 215.3 14.9 127 54-181 1-127 (127)
2 cd02123 PA_C_RZF_like PA_C-RZF 99.9 3.5E-22 7.6E-27 180.1 15.7 121 46-176 22-142 (153)
3 cd02122 PA_GRAIL_like PA _GRAI 99.9 4.8E-22 1E-26 176.4 14.3 118 50-181 17-138 (138)
4 cd02126 PA_EDEM3_like PA_EDEM3 99.9 5.5E-22 1.2E-26 173.3 13.4 118 50-181 2-126 (126)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 2E-21 4.3E-26 168.1 14.1 114 54-182 1-117 (118)
6 cd02132 PA_GO-like PA_GO-like: 99.9 5.3E-21 1.1E-25 169.8 14.2 121 45-181 16-139 (139)
7 cd04813 PA_1 PA_1: Protease-as 99.8 2.1E-19 4.5E-24 155.3 11.6 106 50-173 5-111 (117)
8 cd04816 PA_SaNapH_like PA_SaNa 99.8 5.4E-18 1.2E-22 146.9 14.1 114 53-181 6-122 (122)
9 cd02129 PA_hSPPL_like PA_hSPPL 99.8 2.5E-18 5.5E-23 149.0 11.6 96 68-180 24-119 (120)
10 cd02130 PA_ScAPY_like PA_ScAPY 99.8 1.1E-17 2.5E-22 144.7 13.6 108 55-181 14-122 (122)
11 cd04818 PA_subtilisin_1 PA_sub 99.7 6.6E-17 1.4E-21 139.0 13.8 113 52-181 2-118 (118)
12 KOG3920 Uncharacterized conser 99.7 7.6E-18 1.6E-22 149.8 4.0 133 35-182 34-172 (193)
13 KOG4628 Predicted E3 ubiquitin 99.7 4.3E-16 9.4E-21 155.7 13.4 116 47-175 35-151 (348)
14 cd02124 PA_PoS1_like PA_PoS1_l 99.7 8E-16 1.7E-20 135.1 11.8 92 72-181 38-129 (129)
15 cd04817 PA_VapT_like PA_VapT_l 99.6 1.8E-15 3.8E-20 134.5 13.0 97 61-177 33-137 (139)
16 PF02225 PA: PA domain; Inter 99.5 1.8E-14 3.8E-19 119.2 6.8 98 60-171 2-101 (101)
17 cd00538 PA PA: Protease-associ 99.5 1.3E-13 2.8E-18 118.1 10.8 99 73-181 28-126 (126)
18 cd02133 PA_C5a_like PA_C5a_lik 99.5 1.5E-12 3.2E-17 115.8 14.1 100 53-173 15-114 (143)
19 KOG2442 Uncharacterized conser 99.4 7.6E-13 1.6E-17 135.6 11.6 139 47-205 54-210 (541)
20 cd04819 PA_2 PA_2: Protease-as 99.4 5.3E-12 1.1E-16 110.4 12.9 104 62-180 21-126 (127)
21 cd04815 PA_M28_2 PA_M28_2: Pro 99.3 1.7E-11 3.7E-16 108.3 8.3 104 60-181 13-134 (134)
22 cd02120 PA_subtilisin_like PA_ 99.1 5.1E-10 1.1E-14 96.5 10.2 85 74-176 36-121 (126)
23 cd02128 PA_TfR PA_TfR: Proteas 99.0 1.5E-09 3.3E-14 100.6 10.7 123 54-185 19-164 (183)
24 cd02121 PA_GCPII_like PA_GCPII 98.6 2.3E-07 5.1E-12 88.6 10.3 126 62-201 43-209 (220)
25 cd04822 PA_M28_1_3 PA_M28_1_3: 98.4 2.7E-06 5.7E-11 76.9 11.1 97 62-173 18-134 (151)
26 cd04814 PA_M28_1 PA_M28_1: Pro 98.4 1.4E-06 3E-11 78.0 8.3 71 51-130 10-100 (142)
27 cd02131 PA_hNAALADL2_like PA_h 98.3 1.8E-06 3.9E-11 77.7 7.3 104 61-172 12-138 (153)
28 cd04820 PA_M28_1_1 PA_M28_1_1: 98.2 4E-06 8.6E-11 74.6 7.4 63 62-130 20-96 (137)
29 KOG2195 Transferrin receptor a 95.5 0.11 2.5E-06 57.6 11.7 216 59-314 153-411 (702)
30 cd04821 PA_M28_1_2 PA_M28_1_2: 92.9 0.17 3.6E-06 46.2 4.8 38 93-130 47-103 (157)
31 cd03023 DsbA_Com1_like DsbA fa 76.3 2.7 5.8E-05 36.1 3.3 70 304-392 68-138 (154)
32 cd03019 DsbA_DsbA DsbA family, 70.0 2.6 5.7E-05 37.5 1.7 54 325-393 99-153 (178)
33 PF07172 GRP: Glycine rich pro 60.5 4.1 8.9E-05 34.2 0.9 27 1-29 1-27 (95)
34 PF13462 Thioredoxin_4: Thiore 56.0 25 0.00055 30.5 5.3 52 287-350 66-117 (162)
35 PRK10954 periplasmic protein d 50.9 9.7 0.00021 35.6 1.9 51 328-393 126-177 (207)
36 cd03022 DsbA_HCCA_Iso DsbA fam 45.5 13 0.00027 33.5 1.7 50 328-392 126-176 (192)
37 COG2234 Iap Predicted aminopep 42.5 72 0.0016 32.9 7.0 84 96-183 104-188 (435)
38 cd03024 DsbA_FrnE DsbA family, 37.5 47 0.001 30.2 4.2 74 304-392 109-184 (201)
39 cd04727 pdxS PdxS is a subunit 33.6 64 0.0014 32.4 4.6 67 107-176 16-89 (283)
40 COG5540 RING-finger-containing 31.4 13 0.00027 37.6 -0.7 43 98-140 149-194 (374)
41 COG1786 Swiveling domain assoc 31.4 3.2E+02 0.007 24.3 8.1 71 94-180 49-122 (131)
42 COG4882 Predicted aminopeptida 31.3 3E+02 0.0066 28.9 9.0 70 96-169 90-161 (486)
43 PRK03955 hypothetical protein; 27.1 4.3E+02 0.0093 23.5 8.3 67 96-180 51-120 (131)
44 KOG3160 Gamma-interferon induc 26.5 47 0.001 32.0 2.3 98 279-402 98-195 (220)
45 TIGR00343 pyridoxal 5'-phospha 25.5 57 0.0012 32.8 2.7 54 107-163 18-77 (287)
46 cd03025 DsbA_FrnE_like DsbA fa 23.7 71 0.0015 28.7 2.8 70 304-373 103-174 (193)
47 PRK10824 glutaredoxin-4; Provi 21.5 1.7E+02 0.0036 25.3 4.5 71 96-175 15-95 (115)
48 cd01387 MYSc_type_XV Myosin mo 21.3 3E+02 0.0064 31.0 7.6 100 212-340 549-654 (677)
49 cd04468 S1_eIF5A S1_eIF5A: Euk 21.2 2.8E+02 0.006 21.9 5.3 31 149-183 26-56 (69)
No 1
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.96 E-value=1.4e-28 Score=215.35 Aligned_cols=127 Identities=65% Similarity=1.100 Sum_probs=107.2
Q ss_pred CCCCCCCCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcc
Q 015274 54 NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL 133 (410)
Q Consensus 54 nFG~p~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~l 133 (410)
|||.|+||++++|.|+|++++.+||+++.....+.+.+|..+++||||+||+|+|.+|++|||++||+||||||+.++++
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 80 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPL 80 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 79999999999999999988999999997632122223567789999999999999999999999999999999988877
Q ss_pred eecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEE
Q 015274 134 ITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (410)
Q Consensus 134 ~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l 181 (410)
++|..++++. ..++..+++||+++|++++|+.|++.+++|..|+++|
T Consensus 81 ~~m~~~~~~~-~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~~ 127 (127)
T cd02125 81 LTMDTPEESG-SADYIEKITIPSALITKAFGEKLKKAISNGEMVVIKL 127 (127)
T ss_pred ccccCccccc-ccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEeC
Confidence 8887654321 1134567899999999999999999999999998874
No 2
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.89 E-value=3.5e-22 Score=180.11 Aligned_cols=121 Identities=33% Similarity=0.456 Sum_probs=101.6
Q ss_pred cceeccccCCCCCCCCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEE
Q 015274 46 GSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLV 125 (410)
Q Consensus 46 ~~y~~~~AnFG~p~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV 125 (410)
..|+...|+||.++++++++|.|+++ +|.+||+++.++. . ..+...++|+||+||+|+|.+|++|||++||+||||
T Consensus 22 ~~~~~~~A~FG~~~~~~~~~g~lv~~-~p~~gC~~~~~~~--~-~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII 97 (153)
T cd02123 22 DEFDDLPANFGPIPPGSGLKGVLVVA-EPLNACSPIENPP--L-NSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIV 97 (153)
T ss_pred ceEeeecccCCCCCCCCceEEEEEeC-CccccCCCCcccc--c-ccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEE
Confidence 57899999999999999999999874 6899999987632 0 113455899999999999999999999999999999
Q ss_pred EeCCCCcceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCe
Q 015274 126 ADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEM 176 (410)
Q Consensus 126 ~dn~~e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~ 176 (410)
||+.++.+..|...+ ....+++||+++|++++|+.|++.++.++.
T Consensus 98 ~n~~~~~~~~m~~~~------~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 98 YNDESNDLISMSGND------QEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred EECCCCcceeccCCC------CCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 999887777775422 112478999999999999999999998776
No 3
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.88 E-value=4.8e-22 Score=176.39 Aligned_cols=118 Identities=25% Similarity=0.390 Sum_probs=97.2
Q ss_pred ccccCCCCCCCCCceEEEEEc--cCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEe
Q 015274 50 SAIGNFGIPQYGGSMAGAVTY--PKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVAD 127 (410)
Q Consensus 50 ~~~AnFG~p~yg~~l~G~lv~--~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~d 127 (410)
..+|+||.+.++..+.|.|+. ++++.+||+++.+.. ..+...++||||+||+|+|.+|++|||++||++|||||
T Consensus 17 ~~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~----~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn 92 (138)
T cd02122 17 TESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFP----IPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYN 92 (138)
T ss_pred ccccccCCCCCCCccEEEEecCCCCCCcCCCCCCcccc----CCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEE
Confidence 358999999999999999864 456789999987621 01345699999999999999999999999999999999
Q ss_pred CCC--CcceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEE
Q 015274 128 DIE--EALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (410)
Q Consensus 128 n~~--e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l 181 (410)
+.+ +.++.|..++ ...||+++|++.+|+.|++++++|..|++++
T Consensus 93 ~~~~~~~~~~m~~~~----------~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 93 NPGTGNETVKMSHPG----------TGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCCCCceeeccCCC----------CCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 986 2356675321 2489999999999999999999999888763
No 4
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.88 E-value=5.5e-22 Score=173.30 Aligned_cols=118 Identities=26% Similarity=0.419 Sum_probs=95.3
Q ss_pred ccccCCCCCCCC-CceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeC
Q 015274 50 SAIGNFGIPQYG-GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADD 128 (410)
Q Consensus 50 ~~~AnFG~p~yg-~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn 128 (410)
..+|.||.+.+. .++.|.|+.+ +|.+||++..++. . ..++|+||+||+|+|.+|+++||++||+||||+|+
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~~-~p~~gC~~~~~~~-~------~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~ 73 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVKA-KPYRACSEITNAE-E------VKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDN 73 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEeC-CchhcccCCCCcc-c------cCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEEC
Confidence 357899988775 4789999875 6889999887632 2 34899999999999999999999999999999998
Q ss_pred CCCc------ceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEE
Q 015274 129 IEEA------LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (410)
Q Consensus 129 ~~e~------l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l 181 (410)
.+++ ++.|.... .....++||+++|++.+|+.|+++++++.+|.+.|
T Consensus 74 ~~~~~~~~~~~~~m~~~~------~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~~ 126 (126)
T cd02126 74 NEGSSSDTAPMFAMSGDG------DSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVLL 126 (126)
T ss_pred CCCccccccceeEeecCC------CCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEeC
Confidence 7652 44554211 11236899999999999999999999998888764
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.87 E-value=2e-21 Score=168.11 Aligned_cols=114 Identities=25% Similarity=0.326 Sum_probs=92.6
Q ss_pred CCCCCCCCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC--
Q 015274 54 NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE-- 131 (410)
Q Consensus 54 nFG~p~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e-- 131 (410)
.||.+..+..+.|.|+. .+|.+||++..++ +..+++|+||+||+|+|.+|++|||++||+||||||+.++
T Consensus 1 ~~~~~~~~~~~~~~lv~-~~p~~gC~~~~~~-------~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~ 72 (118)
T cd02127 1 DFGTIFNTRYKHVPLVP-ADPLEACEELRNI-------HDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSD 72 (118)
T ss_pred CCCccccccccceEEEE-CCccccCCCCCCc-------cccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcc
Confidence 48887777778888875 4689999987653 2344899999999999999999999999999999998754
Q ss_pred -cceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEEE
Q 015274 132 -ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLD 182 (410)
Q Consensus 132 -~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l~ 182 (410)
..+.|... +...+++||+++|++.+|+.|++.+++|..|++.+.
T Consensus 73 ~~~~~m~~~-------~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 73 EYYVEMIQD-------DSSRRADIPAAFLLGKNGYMIRKTLERLGLPYAIIN 117 (118)
T ss_pred ccceEecCC-------CCCCCceEEEEEecHHHHHHHHHHHHcCCceEEeee
Confidence 34466532 223578999999999999999999999998876553
No 6
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.86 E-value=5.3e-21 Score=169.81 Aligned_cols=121 Identities=29% Similarity=0.398 Sum_probs=97.5
Q ss_pred ccceeccccCCCCCCCC---CceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCc
Q 015274 45 KGSHDSAIGNFGIPQYG---GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGAS 121 (410)
Q Consensus 45 ~~~y~~~~AnFG~p~yg---~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~ 121 (410)
...|...+|.||...+. +.+.+.++.+ ++.+||+++.+ ++ +++|+||+||+|+|.+|++|||++||+
T Consensus 16 ~~~~~~~~a~FG~~~p~~~~~~~~~~lv~~-~~~~gC~~~~~---~~------~g~IvLV~RG~C~F~~K~~nA~~aGA~ 85 (139)
T cd02132 16 GDELVGVTARFGASLPSKEDNANKTRAVLA-NPLDCCSPSTS---KL------SGSIALVERGECAFTEKAKIAEAGGAS 85 (139)
T ss_pred ccEEEeeccccCCCCCCcccCccEEEEEEC-CcccccCCCCc---cc------CCeEEEEECCCCCHHHHHHHHHHcCCc
Confidence 35899999999965443 4678888764 68899998763 23 389999999999999999999999999
Q ss_pred EEEEEeCCCCcceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEE
Q 015274 122 AVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (410)
Q Consensus 122 aVIV~dn~~e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l 181 (410)
+|||||+.++ +..|.... ++...+++||+++|++++|+.|+++|++|..|++++
T Consensus 86 avIv~n~~~~-~~~~~~~~-----~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~~ 139 (139)
T cd02132 86 ALLIINDQEE-LYKMVCED-----NDTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVLL 139 (139)
T ss_pred EEEEEECCCc-ccccccCC-----CCCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEeC
Confidence 9999998765 45554221 122236899999999999999999999999888764
No 7
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.81 E-value=2.1e-19 Score=155.33 Aligned_cols=106 Identities=28% Similarity=0.328 Sum_probs=84.6
Q ss_pred ccccCCCCCCCCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCC
Q 015274 50 SAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDI 129 (410)
Q Consensus 50 ~~~AnFG~p~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~ 129 (410)
...|.||+ .+...+++... .+|.+||++++. +...++||||+||+|+|.+|++|||++||++|||||+.
T Consensus 5 ~~~~~~~~-~~~~~~~~~~~--~~p~~gC~~~~~--------~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~ 73 (117)
T cd04813 5 GRYASFSP-ILNPHLRGSYK--VSPTDACSLQEH--------AEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDE 73 (117)
T ss_pred ccccccCC-ccCcccccccc--CCCCCCCCCCCc--------CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECC
Confidence 35689995 45566777654 578999998843 23449999999999999999999999999999999988
Q ss_pred CC-cceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhC
Q 015274 130 EE-ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (410)
Q Consensus 130 ~e-~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~ 173 (410)
++ .+++|..++ ...+++||+++|++++|+.|++.+.+
T Consensus 74 ~~~~~~~m~~~~-------~~~~v~IPav~Is~~~g~~L~~l~~~ 111 (117)
T cd04813 74 PGRGLITMFSNG-------DTDNVTIPAMFTSRTSYHLLSSLLPK 111 (117)
T ss_pred CcccceecccCC-------CCCCcEEEEEEEcHHHHHHHHHhccc
Confidence 65 456675432 13578999999999999999988854
No 8
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.77 E-value=5.4e-18 Score=146.88 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=89.0
Q ss_pred cCCCCCCCCCceEEEEEccCC-CcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC
Q 015274 53 GNFGIPQYGGSMAGAVTYPKE-NRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE 131 (410)
Q Consensus 53 AnFG~p~yg~~l~G~lv~~~~-~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e 131 (410)
..|++....++++|.|++... ..+||++.+... +..+++|||++||+|+|.+|++|||++||+++||+|+.++
T Consensus 6 ~~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~------~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~ 79 (122)
T cd04816 6 LSYSPSTPPGGVTAPLVPLDPERPAGCDASDYDG------LDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDG 79 (122)
T ss_pred EeccCCCCCCCcEEEEEEcCCCCccCCCccccCC------CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 456655556889999998643 259999876543 2345999999999999999999999999999999998764
Q ss_pred ccee--cCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEE
Q 015274 132 ALIT--MDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (410)
Q Consensus 132 ~l~t--M~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l 181 (410)
.... +..+ ....+||+++|++++|+.|++++++|..|++++
T Consensus 80 ~~~~~~~~~~---------~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~~ 122 (122)
T cd04816 80 GGTAGTLGAP---------NIDLKVPVGVITKAAGAALRRRLGAGETLELDA 122 (122)
T ss_pred ccccccccCC---------CCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEeC
Confidence 3321 1111 135789999999999999999999998877653
No 9
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.77 E-value=2.5e-18 Score=148.98 Aligned_cols=96 Identities=23% Similarity=0.222 Sum_probs=74.1
Q ss_pred EEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcceecCCCcccccccc
Q 015274 68 VTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAK 147 (410)
Q Consensus 68 lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~l~tM~~p~~~~~~~~ 147 (410)
|+. .+|..||++.+... ....++|+||+||+|+|.+|++|||++||+|||||||.++. .+... .+
T Consensus 24 ~~~-~~~~~gC~~~~~~~------~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~--~~~~~------~~ 88 (120)
T cd02129 24 LRN-LTSSVLCSASDVPP------GGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLV--PPSGN------RS 88 (120)
T ss_pred eec-CCCcCCCCccccCc------cccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCC--CCCCC------CC
Confidence 444 46889999877542 23459999999999999999999999999999999987532 11111 11
Q ss_pred ccCCcceeEEEecHHHHHHHHHHHhCCCeEEEE
Q 015274 148 YIENITIPSALIDKSFGETLKKALSGGEMVNVN 180 (410)
Q Consensus 148 ~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~ 180 (410)
...+++||++||++++|+.|++.+.++ |+|.
T Consensus 89 ~~~~v~IP~v~Is~~dG~~i~~~l~~~--~~v~ 119 (120)
T cd02129 89 EYEKIDIPVALLSYKDMLDIQQTFGDS--VKVA 119 (120)
T ss_pred CCcCCcccEEEEeHHHHHHHHHHhccC--cEEe
Confidence 225789999999999999999999865 4443
No 10
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.76 E-value=1.1e-17 Score=144.71 Aligned_cols=108 Identities=26% Similarity=0.361 Sum_probs=84.0
Q ss_pred CCCCCCCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCC-Ccc
Q 015274 55 FGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIE-EAL 133 (410)
Q Consensus 55 FG~p~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~-e~l 133 (410)
|+..++ ++.+|.|++. +.+||.+.+.+. +..++||||+||+|+|.+|++||+++||++|||||+.. +.+
T Consensus 14 ~~~~~~-~~~~g~lv~~--~~~gC~~~~~~~-------~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~ 83 (122)
T cd02130 14 FTYSPA-GEVTGPLVVV--PNLGCDAADYPA-------SVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGL 83 (122)
T ss_pred cccCCC-CCcEEEEEEe--CCCCCCcccCCc-------CCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccc
Confidence 443333 5568999985 678999866532 34499999999999999999999999999999999873 322
Q ss_pred eecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEE
Q 015274 134 ITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (410)
Q Consensus 134 ~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l 181 (410)
... .+ ......||+++|++++|+.|++.+++|+.|+++|
T Consensus 84 ~~~-~~--------~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~~ 122 (122)
T cd02130 84 SGT-LG--------EPSGPYVPTVGISQEDGKALVAALANGGEVSANL 122 (122)
T ss_pred ccc-cC--------CCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 111 11 1125789999999999999999999999888764
No 11
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.73 E-value=6.6e-17 Score=138.99 Aligned_cols=113 Identities=37% Similarity=0.585 Sum_probs=91.5
Q ss_pred ccCCCCCCCC---CceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeC
Q 015274 52 IGNFGIPQYG---GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADD 128 (410)
Q Consensus 52 ~AnFG~p~yg---~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn 128 (410)
+|.||..... ..+.|.++. +++.++|++..... +..++|+|++||+|+|..|+.+|+++||+++||+|+
T Consensus 2 ~a~fg~~~~~~~~~~~~~~~~~-~~~~~~C~~~~~~~-------~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~ 73 (118)
T cd04818 2 SAGFGPALTNVTADVVLAGAAP-ASNTDGCTAFTNAA-------AFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANN 73 (118)
T ss_pred CcccCCcCccccccceeEEEec-CCcccccCCCCcCC-------CCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 6899965443 558888886 47899999886522 244999999999999999999999999999999998
Q ss_pred CCC-cceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEE
Q 015274 129 IEE-ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (410)
Q Consensus 129 ~~e-~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l 181 (410)
.++ ..+.|..+. ....||+++|++++|+.|++++++|.+|++++
T Consensus 74 ~~~~~~~~~~~~~---------~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~~ 118 (118)
T cd04818 74 VAGGAPITMGGDD---------PDITIPAVMISQADGDALKAALAAGGTVTVTL 118 (118)
T ss_pred CCCCcceeccCCC---------CCCEEeEEEecHHHHHHHHHHHhcCCcEEEeC
Confidence 864 234564321 24689999999999999999999998888764
No 12
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.70 E-value=7.6e-18 Score=149.79 Aligned_cols=133 Identities=20% Similarity=0.295 Sum_probs=104.6
Q ss_pred eEEEEcCCCcccceeccccC-CCCCCCCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHH
Q 015274 35 SLMVTSPEKIKGSHDSAIGN-FGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVW 113 (410)
Q Consensus 35 ~l~V~~P~~l~~~y~~~~An-FG~p~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~ 113 (410)
.|+|++|.+|+++|+..+|. ||.... .++.|.-.++++|..||+.+.+.- .. .+.|+|++||+|+|..|.+
T Consensus 34 ~F~vlsP~~l~Yty~~~pAkdfG~~F~-~r~e~~~lV~adPp~aC~elrN~~-f~------~d~vaL~eRGeCSFl~Ktl 105 (193)
T KOG3920|consen 34 LFTVLSPYTLAYTYQMKPAKDFGVHFP-DRFENLELVLADPPHACEELRNEI-FA------PDSVALMERGECSFLVKTL 105 (193)
T ss_pred EEEecCcccEEEEEEecchhhhccccc-hhhcCcceeecCChhHHHHHhhcc-cC------CCcEEEEecCCceeeehhh
Confidence 47999999999999999996 996433 467776555789999999998753 22 2689999999999999999
Q ss_pred HHHHcCCcEEEEEeCCCCc-----ceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEEE
Q 015274 114 NAQKAGASAVLVADDIEEA-----LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLD 182 (410)
Q Consensus 114 nAQ~aGA~aVIV~dn~~e~-----l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l~ 182 (410)
|+|+|||.|+||.|+.... .+.|- | |++.++-+||++++-..+|-.++..|++-..+-+.++
T Consensus 106 ~~e~aGa~aiiitd~~~~~~sf~~YveMI-~------D~sq~~AniPa~fllg~~Gy~ir~sL~r~~r~ha~i~ 172 (193)
T KOG3920|consen 106 NGEKAGATAIIITDSQNYEYSFHQYVEMI-P------DESQDRANIPAVFLLGVTGYYIRVSLKRYFRDHAKID 172 (193)
T ss_pred hhhhcCceEEEEecCCCCchhHHHHHHhc-C------cccccccCCceEEEeccceEEEehhHHHhCCccEEEe
Confidence 9999999999999876532 45664 2 2345678999999999999999888876443333333
No 13
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.3e-16 Score=155.72 Aligned_cols=116 Identities=24% Similarity=0.331 Sum_probs=96.5
Q ss_pred ceeccccCCCCCCCCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEE
Q 015274 47 SHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVA 126 (410)
Q Consensus 47 ~y~~~~AnFG~p~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~ 126 (410)
+|...+|+||+....+.+.|.++. ++|.+||++..++... .+....+++||.||+|+|.+|++|||++|++|+|||
T Consensus 35 sf~d~~a~f~~s~~~e~~~G~l~~-~ep~~aC~~i~~~p~~---~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVy 110 (348)
T KOG4628|consen 35 SFADLPALFGPSLPSEGNLGVLVV-AEPLNACNPITNFPEH---STRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVY 110 (348)
T ss_pred cccCCccccCCccccccceeeeec-CCCccccCccccCccC---CCCCcceEEEEEccCCchHHHHhhcccccCceEEEe
Confidence 899999999998888899999985 5788999999773211 245568999999999999999999999999999999
Q ss_pred eCCCC-cceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCC
Q 015274 127 DDIEE-ALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGE 175 (410)
Q Consensus 127 dn~~e-~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~ 175 (410)
||... .++.|... ..++.|+++||+...|+.|+++.....
T Consensus 111 nn~~~~~lv~~~~~---------~~~v~i~~~~vs~~~ge~l~~~~~~~~ 151 (348)
T KOG4628|consen 111 NNVGSEDLVAMASN---------PSKVDIHIVFVSVFSGELLSSYAGRTE 151 (348)
T ss_pred cCCCCchheeeccC---------CccceeEEEEEeeehHHHHHHhhcccc
Confidence 98764 46666422 147999999999999999999766543
No 14
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.66 E-value=8e-16 Score=135.14 Aligned_cols=92 Identities=29% Similarity=0.363 Sum_probs=72.1
Q ss_pred CCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcceecCCCccccccccccCC
Q 015274 72 KENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIEN 151 (410)
Q Consensus 72 ~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~l~tM~~p~~~~~~~~~~~~ 151 (410)
+.+.+||+++.... ++.+++|+||+||+|+|.+|++|||++||++|||||+.++.+ .+... ..
T Consensus 38 ~~~~~gC~~~~~~~------~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~-~~~~~----------~~ 100 (129)
T cd02124 38 SVADDACQPLPDDT------PDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPT-DQVGS----------DA 100 (129)
T ss_pred CCCcccCcCCCccc------ccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcc-cccCC----------CC
Confidence 35779999885421 245599999999999999999999999999999999886643 23211 12
Q ss_pred cceeEEEecHHHHHHHHHHHhCCCeEEEEE
Q 015274 152 ITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (410)
Q Consensus 152 i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l 181 (410)
..||.+++ +++|+.|+++|++|..|++++
T Consensus 101 ~~~~~~~~-~~~G~~l~~~l~~G~~vtv~f 129 (129)
T cd02124 101 DSIIAAVT-PEDGEAWIDALAAGSNVTVDF 129 (129)
T ss_pred cceeeEEe-HHHHHHHHHHHhcCCeEEEeC
Confidence 34666666 999999999999998888764
No 15
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.65 E-value=1.8e-15 Score=134.49 Aligned_cols=97 Identities=28% Similarity=0.304 Sum_probs=73.0
Q ss_pred CCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCC-----HHHHHHHHHHcCCcEEEEEeCC--CCcc
Q 015274 61 GGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCF-----FALKVWNAQKAGASAVLVADDI--EEAL 133 (410)
Q Consensus 61 g~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~Cs-----F~~Kv~nAQ~aGA~aVIV~dn~--~e~l 133 (410)
.+.++|.|++. ..-+|+ +. .. +..++|+||+||+|+ |.+|++|||++||+|||||||. ++.+
T Consensus 33 ~g~~tg~lv~~--g~~g~d-~~--~~------d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~ 101 (139)
T cd04817 33 TGSATGSLYYC--GTSGGS-YI--CG------GMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQ 101 (139)
T ss_pred CCcceEEEEEc--cCCCcc-cc--CC------CcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcc
Confidence 46789999875 345573 21 11 233999999999999 9999999999999999999998 4332
Q ss_pred e-ecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeE
Q 015274 134 I-TMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMV 177 (410)
Q Consensus 134 ~-tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V 177 (410)
. ++..+ ..+++||+++|++++|+.|++.|.++..|
T Consensus 102 ~~~lg~~---------~~~~~IP~v~is~~dG~~L~~~l~~~~tv 137 (139)
T cd04817 102 NPFLVDT---------NNDTTIPSVSVDRADGQALLAALGQSTTV 137 (139)
T ss_pred cccccCC---------CCCceEeEEEeeHHHHHHHHHHhcCCCee
Confidence 2 22211 12579999999999999999999765443
No 16
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.52 E-value=1.8e-14 Score=119.15 Aligned_cols=98 Identities=30% Similarity=0.396 Sum_probs=64.9
Q ss_pred CCCceEEEEEccCC--CcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcceecC
Q 015274 60 YGGSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMD 137 (410)
Q Consensus 60 yg~~l~G~lv~~~~--~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~l~tM~ 137 (410)
+++...|.||.+.. ....|.+..... ....++|||++||.|+|.+|++|||++||+|+||+|..+.. ..+.
T Consensus 2 ~~~~~~~~lV~~~~~~~~~~~~~~~~~~------~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~-~~~~ 74 (101)
T PF02225_consen 2 PSGTVTGPLVPAGNGIDEGDCCPSDYNG------SDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNN-GSMI 74 (101)
T ss_dssp --EEEEEEEEEETTEEECCHHHHHHTST------STCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSC-TTTT
T ss_pred CCCCEEEEEEEecCCCCcccccccccCC------ccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccc-cCcc
Confidence 34678888883211 112333322221 24459999999999999999999999999999999922211 1111
Q ss_pred CCccccccccccCCcceeEEEecHHHHHHHHHHH
Q 015274 138 TPEEDISSAKYIENITIPSALIDKSFGETLKKAL 171 (410)
Q Consensus 138 ~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L 171 (410)
. ........||+++|++++|+.|++++
T Consensus 75 ~-------~~~~~~~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 75 D-------SEDPDPIDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp C-------EBTTTSTBSEEEEE-HHHHHHHHHHH
T ss_pred c-------ccCCCCcEEEEEEeCHHHHhhhhccC
Confidence 1 11234689999999999999999875
No 17
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.50 E-value=1.3e-13 Score=118.07 Aligned_cols=99 Identities=32% Similarity=0.367 Sum_probs=74.5
Q ss_pred CCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcceecCCCccccccccccCCc
Q 015274 73 ENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENI 152 (410)
Q Consensus 73 ~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~l~tM~~p~~~~~~~~~~~~i 152 (410)
.+..+|.+... ++. .+...++|||++||+|+|.+|+.+|+++||+|+||+++.++....|....+ .....
T Consensus 28 ~~~~~C~~~~~---~~~-~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~------~~~~~ 97 (126)
T cd00538 28 GPLVGCGYGTT---DDS-GADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGL------ESTDP 97 (126)
T ss_pred cceEEEecCcc---ccc-CCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccC------CCCCC
Confidence 46678987651 011 124459999999999999999999999999999999988643333322110 01356
Q ss_pred ceeEEEecHHHHHHHHHHHhCCCeEEEEE
Q 015274 153 TIPSALIDKSFGETLKKALSGGEMVNVNL 181 (410)
Q Consensus 153 ~IPsvlIsk~dG~~L~~~L~~g~~V~v~l 181 (410)
.||+++|++++|+.|++++++|..|++++
T Consensus 98 ~iP~~~is~~~g~~l~~~~~~~~~v~~~~ 126 (126)
T cd00538 98 SIPTVGISYADGEALLSLLEAGKTVTVDL 126 (126)
T ss_pred cEeEEEeCHHHHHHHHHHHhcCCceEEeC
Confidence 89999999999999999999988877653
No 18
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.45 E-value=1.5e-12 Score=115.83 Aligned_cols=100 Identities=26% Similarity=0.261 Sum_probs=75.6
Q ss_pred cCCCCCCCCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCc
Q 015274 53 GNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA 132 (410)
Q Consensus 53 AnFG~p~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~ 132 (410)
..++.|...+..++.|+|.. . |.+-+... .+..++|||++||+|+|.+|+.+|+++||+++||+|+.++.
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g---~-g~~~d~~~------~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~ 84 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAG---L-GTPEDFEG------KDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL 84 (143)
T ss_pred ccCCCcCCCCCcEEEEEEcc---C-CchhccCC------CCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc
Confidence 45666666678999999862 2 23322221 13459999999999999999999999999999999987543
Q ss_pred ceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhC
Q 015274 133 LITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (410)
Q Consensus 133 l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~ 173 (410)
..|.. . ....||+++|++++|+.|++++++
T Consensus 85 -~~~~~--------~--~~~~iP~v~Is~~dG~~L~~~l~~ 114 (143)
T cd02133 85 -IPGTL--------G--EAVFIPVVFISKEDGEALKAALES 114 (143)
T ss_pred -ccccC--------C--CCCeEeEEEecHHHHHHHHHHHhC
Confidence 22211 0 135799999999999999999987
No 19
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.43 E-value=7.6e-13 Score=135.60 Aligned_cols=139 Identities=25% Similarity=0.373 Sum_probs=100.1
Q ss_pred ceeccccCCCCCCCCCceEEEEEc--cCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEE
Q 015274 47 SHDSAIGNFGIPQYGGSMAGAVTY--PKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVL 124 (410)
Q Consensus 47 ~y~~~~AnFG~p~yg~~l~G~lv~--~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVI 124 (410)
.+....+.||.-+....-...+.+ -.+|.|-|++... .++++++++.||+|+|.+|+++||++||+|++
T Consensus 54 ~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~---------kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLl 124 (541)
T KOG2442|consen 54 EFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQS---------KLSGKVALVFRGNCSFTEKAKLAQAAGASALL 124 (541)
T ss_pred hhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCc---------cccceeEEEecccceeehhhhhhhhcCceEEE
Confidence 355677788853222111111111 1367888887654 23489999999999999999999999999999
Q ss_pred EEeCCCCcceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEEEeccccCCCCCceeEE-------
Q 015274 125 VADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYE------- 197 (410)
Q Consensus 125 V~dn~~e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l~~~~~~P~pd~~Ve~~------- 197 (410)
|.|+..|- .-|..-+ .+...+++||++||++++|+.|.+....++.|++.++.+. ...|+|.
T Consensus 125 iin~~~d~-~~~~~~~-----~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaPk-----~P~vD~~~v~iwlm 193 (541)
T KOG2442|consen 125 IINNKKDL-LFMPCGN-----KETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAPK-----RPAVDYAMVFIWLM 193 (541)
T ss_pred EEcCchhh-ccCCCCC-----CCccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECCC-----CCCccHHHHHHHHH
Confidence 99997653 3343211 1234689999999999999999999999999999999842 4455554
Q ss_pred ---------eccCCCcc
Q 015274 198 ---------LWTNSNDE 205 (410)
Q Consensus 198 ---------~Wtns~d~ 205 (410)
||....+.
T Consensus 194 AVgTVa~ggyWs~~t~~ 210 (541)
T KOG2442|consen 194 AVGTVACGGYWSGLTER 210 (541)
T ss_pred HHhHhhccchhhhccCh
Confidence 78777665
No 20
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.39 E-value=5.3e-12 Score=110.39 Aligned_cols=104 Identities=19% Similarity=0.126 Sum_probs=76.6
Q ss_pred CceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCC--CHHHHHHHHHHcCCcEEEEEeCCCCcceecCCC
Q 015274 62 GSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDC--FFALKVWNAQKAGASAVLVADDIEEALITMDTP 139 (410)
Q Consensus 62 ~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~C--sF~~Kv~nAQ~aGA~aVIV~dn~~e~l~tM~~p 139 (410)
+.++|.+++.. .| .+.+... .+..++||||+||.| +|..|+.+|+++||+|+||+|+.++.+..+...
T Consensus 21 ~~~~~~lV~~g---~G-~~~d~~~------~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~ 90 (127)
T cd04819 21 GEAKGEPVDAG---YG-LPKDFDG------LDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDE 90 (127)
T ss_pred CCeeEEEEEeC---CC-CHHHcCC------CCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccc
Confidence 56899999863 33 2222211 134599999999999 999999999999999999998876643322110
Q ss_pred ccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEE
Q 015274 140 EEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVN 180 (410)
Q Consensus 140 ~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~ 180 (410)
+........||++.|+.++|+.|++.+++|..|.++
T Consensus 91 -----~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~~ 126 (127)
T cd04819 91 -----GTEDGPPSPIPAASVSGEDGLRLARVAERNDTLVLR 126 (127)
T ss_pred -----cccCCCCCCCCEEEEeHHHHHHHHHHHhcCCceEee
Confidence 111123468999999999999999999999877653
No 21
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.25 E-value=1.7e-11 Score=108.29 Aligned_cols=104 Identities=20% Similarity=0.161 Sum_probs=77.2
Q ss_pred CCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCC------CHHHH-------HHHHHHcCCcEEEEE
Q 015274 60 YGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDC------FFALK-------VWNAQKAGASAVLVA 126 (410)
Q Consensus 60 yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~C------sF~~K-------v~nAQ~aGA~aVIV~ 126 (410)
.++.++|++++..+ .+ .+.. +. .....|+||||+||.| +|..| ..+|+++||.|+||+
T Consensus 13 ~~~gvta~vv~v~~--~~--~~~~----~~-~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~ 83 (134)
T cd04815 13 PPEGITAEVVVVKS--FD--ELKA----AP-AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIR 83 (134)
T ss_pred CCCCcEEEEEEECC--HH--HHHh----cc-hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEE
Confidence 34679999998742 22 2221 21 1245599999999999 99999 699999999999999
Q ss_pred eCCCCc---c-e-ecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEE
Q 015274 127 DDIEEA---L-I-TMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNL 181 (410)
Q Consensus 127 dn~~e~---l-~-tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l 181 (410)
|..+.. . . +|..+ .....||++.|+..+|+.|.+.+++|.+|+++|
T Consensus 84 s~~~~~~~~~~~G~~~~~---------~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~l 134 (134)
T cd04815 84 SIGTDSHRSPHTGMMSYD---------DGVPKIPAAAISVEDADMLERLAARGKPIRVNL 134 (134)
T ss_pred ecCcccCCCCcCCccccC---------CCCCCCCEEEechhcHHHHHHHHhCCCCeEEeC
Confidence 975432 1 1 23221 124689999999999999999999999888764
No 22
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.10 E-value=5.1e-10 Score=96.55 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=66.9
Q ss_pred CcCCCCCCCCCCccccCCCCCCCcEEEEecCCC-CHHHHHHHHHHcCCcEEEEEeCCCCcceecCCCccccccccccCCc
Q 015274 74 NRKGCREFGDFGISFKAKPGALPNFVLVDRGDC-FFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENI 152 (410)
Q Consensus 74 ~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~C-sF~~Kv~nAQ~aGA~aVIV~dn~~e~l~tM~~p~~~~~~~~~~~~i 152 (410)
...+|++.......+ .++|||++||.| +|..|+.+|+++||.|+|++++..+.. .+.. ...
T Consensus 36 ~~~~C~~~~~~~~~v------~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~-~~~~-----------~~~ 97 (126)
T cd02120 36 DASLCLPGSLDPSKV------KGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL-DVVA-----------DAH 97 (126)
T ss_pred ccccCCCCCCChhhc------cccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc-eecc-----------ccc
Confidence 447898765432123 499999999999 999999999999999999999875532 1210 135
Q ss_pred ceeEEEecHHHHHHHHHHHhCCCe
Q 015274 153 TIPSALIDKSFGETLKKALSGGEM 176 (410)
Q Consensus 153 ~IPsvlIsk~dG~~L~~~L~~g~~ 176 (410)
.||+++|++++|+.|+++++++..
T Consensus 98 ~iP~v~I~~~~g~~l~~y~~~~~~ 121 (126)
T cd02120 98 VLPAVHVDYEDGTAILSYINSTSN 121 (126)
T ss_pred ccceEEECHHHHHHHHHHHHcCCC
Confidence 799999999999999999997643
No 23
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=99.03 E-value=1.5e-09 Score=100.60 Aligned_cols=123 Identities=24% Similarity=0.288 Sum_probs=77.3
Q ss_pred CCCCCCCCCceEEEEEccCCCcCCCCCCCCCCccccC-CCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCc
Q 015274 54 NFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKA-KPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA 132 (410)
Q Consensus 54 nFG~p~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~-~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~ 132 (410)
+|-.-...++++|.|||+ ..| ...++. .++. .-...++||||+||.|+|.+|+++||++||+|||||+|..+.
T Consensus 19 ~f~~~s~~G~v~g~lVyv---n~G-~~~Df~--~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~ 92 (183)
T cd02128 19 GYVAYSAAGTVTGKLVYA---NYG-RKKDFE--DLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADF 92 (183)
T ss_pred cccCCCCCCceEEEEEEc---CCC-CHHHHH--HHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHc
Confidence 454333347889999996 244 322221 0110 123459999999999999999999999999999999874221
Q ss_pred -------------------ceecCCCcccc---ccccccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEEEecc
Q 015274 133 -------------------LITMDTPEEDI---SSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWRE 185 (410)
Q Consensus 133 -------------------l~tM~~p~~~~---~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l~~~~ 185 (410)
..|.+-|.... ...+...-.+||++-||.+++..|++.|.- .. +--+|+.
T Consensus 93 ~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G-~~--~p~~w~g 164 (183)
T cd02128 93 PIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG-PV--CPSGWKG 164 (183)
T ss_pred CcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC-CC--CCccccC
Confidence 01111111000 000111235899999999999999999963 32 2457754
No 24
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.61 E-value=2.3e-07 Score=88.59 Aligned_cols=126 Identities=27% Similarity=0.292 Sum_probs=81.5
Q ss_pred CceEEEEEccCCCcCCCCCCCCCCcccc-CCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCc--------
Q 015274 62 GSMAGAVTYPKENRKGCREFGDFGISFK-AKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA-------- 132 (410)
Q Consensus 62 ~~l~G~lv~~~~~~~GC~~~~~~~~~~~-~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~-------- 132 (410)
+.++|.|||+. .|...++. .++ ..-+..++|||+++|.|.+..|+++|+++||+|||||++..+.
T Consensus 43 g~v~g~lVyvn----yG~~~D~~--~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~~~~~~~~ 116 (220)
T cd02121 43 GNVTAELVYAN----YGSPEDFE--YLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDGYITGENG 116 (220)
T ss_pred CCceEEEEEcC----CCcHHHHH--HHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhccccccccc
Confidence 67899999972 45443321 011 0124459999999999999999999999999999999874221
Q ss_pred ------------ce----ec---CCCcc--cc---c--cc------cccCCcceeEEEecHHHHHHHHHHHhCCCeEEEE
Q 015274 133 ------------LI----TM---DTPEE--DI---S--SA------KYIENITIPSALIDKSFGETLKKALSGGEMVNVN 180 (410)
Q Consensus 133 ------------l~----tM---~~p~~--~~---~--~~------~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~ 180 (410)
-+ .+ ..++| ++ + .. +...-.+||+.-||..+++.|++.|.... +-
T Consensus 117 ~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g~~---~p 193 (220)
T cd02121 117 KTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGGPG---AP 193 (220)
T ss_pred ccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCCCC---CC
Confidence 00 00 01111 00 0 00 11123579999999999999999997432 45
Q ss_pred EEeccccCCCCCceeEEeccC
Q 015274 181 LDWREAVPHPDDRVEYELWTN 201 (410)
Q Consensus 181 l~~~~~~P~pd~~Ve~~~Wtn 201 (410)
-+|+..++ +.|.+|..
T Consensus 194 ~~W~g~l~-----~~y~~g~~ 209 (220)
T cd02121 194 SDWQGGLP-----VTYRLGFG 209 (220)
T ss_pred ccccCCCC-----CceeeCCC
Confidence 67866543 56776533
No 25
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.41 E-value=2.7e-06 Score=76.95 Aligned_cols=97 Identities=21% Similarity=0.168 Sum_probs=66.9
Q ss_pred CceEEEEEccCC--CcCCCCCCCCCCccccCCCCCCCcEEEEecCC------------------CCHHHHHHHHHHcCCc
Q 015274 62 GSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGD------------------CFFALKVWNAQKAGAS 121 (410)
Q Consensus 62 ~~l~G~lv~~~~--~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~------------------CsF~~Kv~nAQ~aGA~ 121 (410)
+.++|.||++.. ...+|...++...+++ |+||||.||. |+|..|+.+|+++||+
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy~giDVk------GKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~ 91 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDYAGLDVK------GKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAA 91 (151)
T ss_pred CCceEeEEEecCCcCccccchhhccCCCCC------CeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCe
Confidence 679999999742 3467765555443444 9999999985 9999999999999999
Q ss_pred EEEEEeCCCCcceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhC
Q 015274 122 AVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (410)
Q Consensus 122 aVIV~dn~~e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~ 173 (410)
|||||++..+..-.-+.+. .. ..+ .++.|+....+.+..++..
T Consensus 92 aVIv~~d~~~~~~~~~~~~----~~----~~~-~~~~~~~~~~~~~~~~~~~ 134 (151)
T cd04822 92 AVIVVNGPNSHSGDADRLP----RF----GGT-APQRVDIAAADPWFTAAEA 134 (151)
T ss_pred EEEEEeCCcccCccccccc----cc----Ccc-ceEEechHHHHHHhhhhhh
Confidence 9999998654321000000 00 111 1788888888888886443
No 26
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.37 E-value=1.4e-06 Score=78.04 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=54.5
Q ss_pred cccCCCCCCCCCceEEEEEccCC--CcCCCCCCCCCCccccCCCCCCCcEEEEecCCC------------------CHHH
Q 015274 51 AIGNFGIPQYGGSMAGAVTYPKE--NRKGCREFGDFGISFKAKPGALPNFVLVDRGDC------------------FFAL 110 (410)
Q Consensus 51 ~~AnFG~p~yg~~l~G~lv~~~~--~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~C------------------sF~~ 110 (410)
.+.+|+.+ +.++|+||++.. ...+|.--++...++ .|+||||.||.| +|..
T Consensus 10 ~~~~~~~~---~~~~aelVfvGyGi~a~~~~~dDYag~DV------kGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~ 80 (142)
T cd04814 10 AMLNVDAV---AIKDAPLVFVGYGIKAPELSWDDYAGLDV------KGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTY 80 (142)
T ss_pred cccCCCCc---cccceeeEEecCCcCCCCCChhhcCCCCC------CCcEEEEEcCCCCcccccccccccccccccCHHH
Confidence 55666643 567899998742 245677555544344 499999999999 6999
Q ss_pred HHHHHHHcCCcEEEEEeCCC
Q 015274 111 KVWNAQKAGASAVLVADDIE 130 (410)
Q Consensus 111 Kv~nAQ~aGA~aVIV~dn~~ 130 (410)
|+.+|+++||+||||+++.+
T Consensus 81 K~~~A~~~GA~gvIii~~~~ 100 (142)
T cd04814 81 KYEEAARHGAAGVLIVHELA 100 (142)
T ss_pred HHHHHHHCCCcEEEEEeCCC
Confidence 99999999999999999865
No 27
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.30 E-value=1.8e-06 Score=77.74 Aligned_cols=104 Identities=15% Similarity=0.156 Sum_probs=67.6
Q ss_pred CCceEEEEEccCCCcCCCC-CCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCc-------
Q 015274 61 GGSMAGAVTYPKENRKGCR-EFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA------- 132 (410)
Q Consensus 61 g~~l~G~lv~~~~~~~GC~-~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~------- 132 (410)
.|+++|.+||+. .|=. .|.. ++..-+..|+|+|++.|.-++..|++|||++||.|||||.|..+.
T Consensus 12 sG~Vtg~~VYvN---yG~~eDf~~----L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~d~~~~~~~~ 84 (153)
T cd02131 12 KGTLQAEVVDVQ---YGSVEDLRR----IRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPCDLPKTRHTW 84 (153)
T ss_pred CCceEEEEEEec---CCCHHHHHH----HHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChhhccCcCCCc
Confidence 378999999972 2211 1110 111123449999999999999999999999999999999875321
Q ss_pred --ce--ec---CCCcccc---c--cc---cccCCcceeEEEecHHHHHHHHHHHh
Q 015274 133 --LI--TM---DTPEEDI---S--SA---KYIENITIPSALIDKSFGETLKKALS 172 (410)
Q Consensus 133 --l~--tM---~~p~~~~---~--~~---~~~~~i~IPsvlIsk~dG~~L~~~L~ 172 (410)
.. .+ ++|. ++ + +. ....-.+||+.-||..++..|+++-.
T Consensus 85 ~~v~~v~~~~~GDP~-TPG~PS~~~~~R~~~~~lP~IPs~PIS~~dA~~lL~~~~ 138 (153)
T cd02131 85 HQAFMVSLNPGGDPS-TPGYPSADQSCRQCRGNLTSLLVQPISAYLAKKLLSAPP 138 (153)
T ss_pred cceEEEecCCCCCCC-CCCCccccCcccCCcCCCCCCcccccCHHHHHHHHhCCc
Confidence 00 11 1111 11 0 00 11133689999999999999887654
No 28
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.21 E-value=4e-06 Score=74.63 Aligned_cols=63 Identities=19% Similarity=0.111 Sum_probs=50.0
Q ss_pred CceEEEEEccC--CCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCC------------HHHHHHHHHHcCCcEEEEEe
Q 015274 62 GSMAGAVTYPK--ENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCF------------FALKVWNAQKAGASAVLVAD 127 (410)
Q Consensus 62 ~~l~G~lv~~~--~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~Cs------------F~~Kv~nAQ~aGA~aVIV~d 127 (410)
+.++|.||++. ....+|..-++...+++ |+||||.||.|. +..|+.+|+++||+||||++
T Consensus 20 g~v~gelVfvGyG~~~~~~~~~Dy~~iDVk------GKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 20 ASVEAPLVFVGYGLVAPELGHDDYAGLDVK------GKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred CCceEeEEEecCCcCccCcCHhhccCCCCC------CeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 67899999874 23456775554433444 999999999994 88999999999999999998
Q ss_pred CCC
Q 015274 128 DIE 130 (410)
Q Consensus 128 n~~ 130 (410)
+..
T Consensus 94 d~~ 96 (137)
T cd04820 94 TPR 96 (137)
T ss_pred CCc
Confidence 754
No 29
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=95.54 E-value=0.11 Score=57.59 Aligned_cols=216 Identities=20% Similarity=0.173 Sum_probs=122.4
Q ss_pred CCCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC----c--
Q 015274 59 QYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE----A-- 132 (410)
Q Consensus 59 ~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e----~-- 132 (410)
...++..|.+||.. ..+=..+..-. .. .-+.+++|+|++-|.-++..|+.||+++||.+||+|.+..+ .
T Consensus 153 s~~g~~~~~~Vy~N--~~~~~d~~~l~-~~--~i~~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~d~~~~~~~ 227 (702)
T KOG2195|consen 153 SPSGSVTGELVYAN--YGRIEDFYKLE-DL--GINLSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPYDYGSDEVL 227 (702)
T ss_pred CcCCCccceEEEEe--cCchhhhhHhh-cC--cccccCceEEEEccccchhhhHhhHHHhhcCcEEEeeccccccccccc
Confidence 33477888888862 22212221100 00 11345899999999999999999999999999999976421 0
Q ss_pred -------------ce----e-----cCCCcccc----------c-cccccC-CcceeEEEecHHHHHHHHHHHhCCCeEE
Q 015274 133 -------------LI----T-----MDTPEEDI----------S-SAKYIE-NITIPSALIDKSFGETLKKALSGGEMVN 178 (410)
Q Consensus 133 -------------l~----t-----M~~p~~~~----------~-~~~~~~-~i~IPsvlIsk~dG~~L~~~L~~g~~V~ 178 (410)
++ . .+.|.... . +..... -..||+.-|+..+.+.|.+.+..+-...
T Consensus 228 ~~~p~~~~~~p~~~v~~g~v~~~~~~gdp~tpg~pa~~~~~~~~~~~~~~~~~P~Ip~~Pis~~~ae~l~~~~~g~~~~~ 307 (702)
T KOG2195|consen 228 EVYPKGIWFMPEPGVERGKVYNSNGVGDPLTPGYPAVDIYSRHSPDAKFSGGLPKIPSLPISAEDAEILLRLLGGGVKPD 307 (702)
T ss_pred cccCcccccCCccceecceecccCCCCCCCCCCccCccccccCChhhhhcCCCCCCCCcCccchhHHHHHHHhCCCcccc
Confidence 01 0 01111000 0 011112 3489999999977777777776543222
Q ss_pred EEEEeccccCCCCCceeEEeccCCCccccchhhhhHHHHHHhhHHHHHhhcCCceeEeeEEEEeccCccccccccccccc
Q 015274 179 VNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQC 258 (410)
Q Consensus 179 v~l~~~~~~P~pd~~Ve~~~Wtns~d~cg~~cd~~~~fi~~f~~~aq~l~~~g~~~FtPhy~~~~c~~~~~~~~~~~~~C 258 (410)
+ ...+.|..++...-.+. + .++. +...+++.+.+-.+-+... ..++-
T Consensus 308 ----~-------~~~~~~~~gpg~~~~~~--------~---------~~~~-~~~~~~ki~NIig~I~Gs~----epD~~ 354 (702)
T KOG2195|consen 308 ----G-------LLGVSYRVGPGSTGDKD--------L---------VVVQ-NTREETKIQNIIGKIEGSE----EPDRY 354 (702)
T ss_pred ----c-------ccCcccccccccccccc--------c---------eecc-ceeeeeeeeeEEEEEecCc----CCCeE
Confidence 2 34567777776554321 1 0011 3445666666655543322 22333
Q ss_pred ccCCcccCCCCCCCCCCCCcchhhHHHHHHHhhhhhhcccC---CCCcchhhhHHHhcc
Q 015274 259 INHGRYCAPDPEQDFSSGYEGKDVVLENLRQLCVFKVAKES---KKPWVWWDYVTDFQI 314 (410)
Q Consensus 259 i~~GrYCa~dP~~~~~~~~sG~dvV~E~lRqlCi~k~~~~~---~~~~~WW~Yv~~F~~ 314 (410)
|-.|.|-+.=-.+ -.+..+|+-+++|..|++-.++...-. ...+.||+ ..+|+-
T Consensus 355 ViigahrDSw~~G-a~dp~sGta~Ll~i~~~~~~~~k~gwrP~RtI~F~sWd-AeEfGl 411 (702)
T KOG2195|consen 355 VIIGAHRDSWTFG-AIDPNSGTALLLEIARALSKLKKRGWRPRRTILFASWD-AEEFGL 411 (702)
T ss_pred EEEeccccccccC-CcCCCccHHHHHHHHHHHHHHHHcCCCccceEEEEEcc-chhccc
Confidence 4444442221111 113358999999999999998775531 24578997 455554
No 30
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.86 E-value=0.17 Score=46.25 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=30.1
Q ss_pred CCCCcEEEEecCCCCH-------------------HHHHHHHHHcCCcEEEEEeCCC
Q 015274 93 GALPNFVLVDRGDCFF-------------------ALKVWNAQKAGASAVLVADDIE 130 (410)
Q Consensus 93 ~~~~~IvLV~RG~CsF-------------------~~Kv~nAQ~aGA~aVIV~dn~~ 130 (410)
+..||||||.+|+=.| ..|...|.++||+|||++.+..
T Consensus 47 DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 47 DVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred CcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 4448899988876533 3499999999999999997653
No 31
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=76.34 E-value=2.7 Score=36.08 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=40.7
Q ss_pred chhhhHHHhcccCCCCchhcHHHHHHHHHHHcCCCHHHHHhhhccccC-CccccchhhhhhcccccccccccccCCCceE
Q 015274 304 VWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILRS-EPLWHNICLWTVNLKFQITSTMNVHDQGKSS 382 (410)
Q Consensus 304 ~WW~Yv~~F~~~C~~~~~~y~~~Cs~~v~k~lgid~~~v~~C~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (410)
++|+|....-.. .. ..+.+=-.++++++|+|.+++++|+.+... +.+.++..+. .+-.|.
T Consensus 68 ~~~~~~~~lf~~---~~-~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~gi~ 128 (154)
T cd03023 68 KYLEFHNALMAT---RG-RLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLA---------------RALGIT 128 (154)
T ss_pred HHHHHHHHHHhc---CC-CCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHH---------------HHcCCC
Confidence 688887764321 01 122222446778999999999999976431 2222222111 122355
Q ss_pred EEEEEEEcCC
Q 015274 383 IFVTISIDTD 392 (410)
Q Consensus 383 ~~~t~~~~~~ 392 (410)
=.||++|||+
T Consensus 129 gtPt~~v~g~ 138 (154)
T cd03023 129 GTPAFIIGDT 138 (154)
T ss_pred cCCeEEECCE
Confidence 5899999997
No 32
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=69.98 E-value=2.6 Score=37.49 Aligned_cols=54 Identities=13% Similarity=0.060 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCHHHHHhhhccccC-CccccchhhhhhcccccccccccccCCCceEEEEEEEEcCCC
Q 015274 325 KECAAAVIKSLGLDAKKIENLTWILRS-EPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDW 393 (410)
Q Consensus 325 ~~Cs~~v~k~lgid~~~v~~C~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 393 (410)
.+--.++.+++|+|.+++++|+.+... +.+.++..+.. +-.|.=-||++|||++
T Consensus 99 ~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~---------------~~gi~gTPt~iInG~~ 153 (178)
T cd03019 99 PDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAK---------------KYKITGVPAFVVNGKY 153 (178)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHH---------------HcCCCCCCeEEECCEE
Confidence 445678888999999999999976542 22222221111 2235567999999984
No 33
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=60.45 E-value=4.1 Score=34.17 Aligned_cols=27 Identities=30% Similarity=0.100 Sum_probs=13.0
Q ss_pred CCCCcchhHHHHHHHHHHHhhccccceeE
Q 015274 1 MESHGSITLKLFLGFLILSLNVHTSVSRF 29 (410)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~f 29 (410)
|+|... |+|+|+|+++|+.++.++||=
T Consensus 1 MaSK~~--llL~l~LA~lLlisSevaa~~ 27 (95)
T PF07172_consen 1 MASKAF--LLLGLLLAALLLISSEVAARE 27 (95)
T ss_pred CchhHH--HHHHHHHHHHHHHHhhhhhHH
Confidence 664433 444444444454455455543
No 34
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=56.03 E-value=25 Score=30.49 Aligned_cols=52 Identities=12% Similarity=0.121 Sum_probs=30.8
Q ss_pred HHHhhhhhhcccCCCCcchhhhHHHhcccCCCCchhcHHHHHHHHHHHcCCCHHHHHhhhcccc
Q 015274 287 LRQLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILR 350 (410)
Q Consensus 287 lRqlCi~k~~~~~~~~~~WW~Yv~~F~~~C~~~~~~y~~~Cs~~v~k~lgid~~~v~~C~~~s~ 350 (410)
.--.|+.+.. + .||.+...+...-. ..... .++.+.-+.+.+++++|+.+..
T Consensus 66 ~~~~~~~~~~-~-----~~~~~~~~~~~~~~---~~~~~---~~i~~~~~~~~~~~~~~~~~~~ 117 (162)
T PF13462_consen 66 MAAECVADQG-K-----YFWFFHELLFSQQE---NFENK---KDIAANAGGSNEQFNKCLNSDE 117 (162)
T ss_dssp HHHHHHHHHT-H-----HHHHHHHHHHHHCH---STSSH---HHHHHHTTSHHHHHHHHHTSHH
T ss_pred HHHHHHHHHh-H-----HHHHHHHHHHHhhh---ccchh---HHHHHHcCCCHHHHHHHhhchH
Confidence 3355666664 4 78877765544432 11111 4444556667899999997765
No 35
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=50.88 E-value=9.7 Score=35.64 Aligned_cols=51 Identities=4% Similarity=-0.074 Sum_probs=32.1
Q ss_pred HHHHHHHcCCCHHHHHhhhcccc-CCccccchhhhhhcccccccccccccCCCceEEEEEEEEcCCC
Q 015274 328 AAAVIKSLGLDAKKIENLTWILR-SEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDW 393 (410)
Q Consensus 328 s~~v~k~lgid~~~v~~C~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 393 (410)
-.++.+..|+|.+++++|+.+.. ..+++++..+. .+-.|.==||++|||++
T Consensus 126 L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a---------------~~~gI~gtPtfiInGky 177 (207)
T PRK10954 126 IRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAA---------------ADLQLRGVPAMFVNGKY 177 (207)
T ss_pred HHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHH---------------HHcCCCCCCEEEECCEE
Confidence 55667889999999999997643 12222222111 11234445999999994
No 36
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=45.46 E-value=13 Score=33.53 Aligned_cols=50 Identities=22% Similarity=0.043 Sum_probs=33.0
Q ss_pred HHHHHHHcCCCHHHHHhhhccccC-CccccchhhhhhcccccccccccccCCCceEEEEEEEEcCC
Q 015274 328 AAAVIKSLGLDAKKIENLTWILRS-EPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTD 392 (410)
Q Consensus 328 s~~v~k~lgid~~~v~~C~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 392 (410)
-.++.+++|+|.+++++++.+... +.+.++..+.. +-.|+=.||++|||+
T Consensus 126 l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~---------------~~gi~gvPtfvv~g~ 176 (192)
T cd03022 126 LAAVAAAAGLDADELLAAADDPAVKAALRANTEEAI---------------ARGVFGVPTFVVDGE 176 (192)
T ss_pred HHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHH---------------HcCCCcCCeEEECCe
Confidence 456778899999999999876542 33333331111 123566799999998
No 37
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=42.46 E-value=72 Score=32.95 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=58.1
Q ss_pred CcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcce-ecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCC
Q 015274 96 PNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALI-TMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGG 174 (410)
Q Consensus 96 ~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~l~-tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g 174 (410)
..+.++.|+...+..+..++..+|+.+.+.++....... -+..-. .........+|+..+.+..|..+......+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (435)
T COG2234 104 LPAAFISRGNADLVETAPNAVEAGAAAFILYASVAAENFPKLGLIG----TGRALYLAEIPAVGVSKLVGNRLIFYKQAG 179 (435)
T ss_pred cccccccccccchhhcccchhhcccchheeeccccccccccccccc----ccccccccccccccccccchhHHhhhhhcC
Confidence 456677888899999999999999999999987654222 111100 011123469999999999999998888877
Q ss_pred CeEEEEEEe
Q 015274 175 EMVNVNLDW 183 (410)
Q Consensus 175 ~~V~v~l~~ 183 (410)
.........
T Consensus 180 ~~~~~~~~~ 188 (435)
T COG2234 180 GGLTSKNVA 188 (435)
T ss_pred cceEEEEEe
Confidence 544444443
No 38
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=37.49 E-value=47 Score=30.15 Aligned_cols=74 Identities=11% Similarity=-0.037 Sum_probs=42.5
Q ss_pred chhhhHHHhcccCCCCchhc-HHHHHHHHHHHcCCCHHHHHhhhccccC-CccccchhhhhhcccccccccccccCCCce
Q 015274 304 VWWDYVTDFQIRCPMKDKKY-NKECAAAVIKSLGLDAKKIENLTWILRS-EPLWHNICLWTVNLKFQITSTMNVHDQGKS 381 (410)
Q Consensus 304 ~WW~Yv~~F~~~C~~~~~~y-~~~Cs~~v~k~lgid~~~v~~C~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (410)
.+|.|....-..-....... ..+=-.++.+.+|+|.+++++|+.+.-. ..+.++..+.. +-.|
T Consensus 109 ~~~~~~~~lf~a~~~~~~~i~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~---------------~~gv 173 (201)
T cd03024 109 KQDALVEALFRAYFTEGKDIGDRDVLVDLAEEAGLDAAEARAVLASDEYADEVRADEARAR---------------QLGI 173 (201)
T ss_pred cHHHHHHHHHHHHHccCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCcccchHHHHHHHHHH---------------HCCC
Confidence 46666666433222111112 2345567788899999999999987553 23223321111 1234
Q ss_pred EEEEEEEEcCC
Q 015274 382 SIFVTISIDTD 392 (410)
Q Consensus 382 ~~~~t~~~~~~ 392 (410)
+=.||++|||+
T Consensus 174 ~G~Pt~vv~g~ 184 (201)
T cd03024 174 SGVPFFVFNGK 184 (201)
T ss_pred CcCCEEEECCe
Confidence 55789999886
No 39
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=33.62 E-value=64 Score=32.36 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHcCCcEEEEEeCCCC------cceecCCCccccccccccCCcceeEEEecHHHH-HHHHHHHhCCCe
Q 015274 107 FFALKVWNAQKAGASAVLVADDIEE------ALITMDTPEEDISSAKYIENITIPSALIDKSFG-ETLKKALSGGEM 176 (410)
Q Consensus 107 sF~~Kv~nAQ~aGA~aVIV~dn~~e------~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG-~~L~~~L~~g~~ 176 (410)
+-+++++-|++|||.+|++-+.-+. ....|++|++- -.-...++||.+.+-|.+- ...+...+.|-.
T Consensus 16 ~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I---~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvD 89 (283)
T cd04727 16 TNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMI---KEIMDAVSIPVMAKVRIGHFVEAQILEALGVD 89 (283)
T ss_pred CCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHH---HHHHHhCCCCeEEeeehhHHHHHHHHHHcCCC
Confidence 5578899999999999999776543 33466666531 1112347999999988763 333444455644
No 40
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.39 E-value=13 Score=37.64 Aligned_cols=43 Identities=14% Similarity=0.064 Sum_probs=34.5
Q ss_pred EEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCc---ceecCCCc
Q 015274 98 FVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA---LITMDTPE 140 (410)
Q Consensus 98 IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~---l~tM~~p~ 140 (410)
+.+++||+|+..+|.+-+++.|-+|+|..++.... +.-|-.|+
T Consensus 149 ~~~~~rgn~t~~d~~rer~r~~fkgvi~Gs~r~~~~frlhymvapd 194 (374)
T COG5540 149 DRCNRRGNETEEDPTRERRRTRFKGVIRGSERNGETFRLHYMVAPD 194 (374)
T ss_pred HHHHHccCccccCccccchhccccceeeccccCCceEEEEEEeccC
Confidence 45678999999999999999999999999987543 33455554
No 41
>COG1786 Swiveling domain associated with predicted aconitase [Energy production and conversion]
Probab=31.35 E-value=3.2e+02 Score=24.31 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=46.3
Q ss_pred CCCcEEEEe--cCCCCHHHHHHHHHHcC-CcEEEEEeCCCCcceecCCCccccccccccCCcceeEEEecHHHHHHHHHH
Q 015274 94 ALPNFVLVD--RGDCFFALKVWNAQKAG-ASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKA 170 (410)
Q Consensus 94 ~~~~IvLV~--RG~CsF~~Kv~nAQ~aG-A~aVIV~dn~~e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~ 170 (410)
..++|+++. ||.|.=.-=.+.+.+.| |-++||. .+.|++++.+.- --.||.+-.-. .+.+.
T Consensus 49 l~Gkilv~P~grGStvGSyVl~~l~~~G~AP~aIv~-~e~EpIla~Gai-----------~a~iPlv~~~~----e~~~~ 112 (131)
T COG1786 49 LTGKILVFPGGRGSTVGSYVLYELAKNGRAPAAIVN-EEAEPILAVGAI-----------LAGIPLVDGVD----EFFEE 112 (131)
T ss_pred ccceEEEeeCCCCccccHHHHHHHHHcCCCchhhhh-cCCcceeeehhh-----------hcCCceEeccH----HHHHH
Confidence 458898886 78897777788888888 5555654 455676665421 11667654433 56677
Q ss_pred HhCCCeEEEE
Q 015274 171 LSGGEMVNVN 180 (410)
Q Consensus 171 L~~g~~V~v~ 180 (410)
++.+..|.+.
T Consensus 113 l~~g~~v~v~ 122 (131)
T COG1786 113 LKTGDRVRVN 122 (131)
T ss_pred hccCCEEEEc
Confidence 8777666544
No 42
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=31.25 E-value=3e+02 Score=28.93 Aligned_cols=70 Identities=19% Similarity=0.168 Sum_probs=44.5
Q ss_pred CcEEEEecCCCCHHHHH--HHHHHcCCcEEEEEeCCCCcceecCCCccccccccccCCcceeEEEecHHHHHHHHH
Q 015274 96 PNFVLVDRGDCFFALKV--WNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKK 169 (410)
Q Consensus 96 ~~IvLV~RG~CsF~~Kv--~nAQ~aGA~aVIV~dn~~e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~ 169 (410)
|.+++.+|-+--...|. ..|.++||.|+|+-.+.+..+++-++=.- ........||++.+...++..++.
T Consensus 90 Gr~~Va~~pq~vdd~k~~~i~Aae~ga~a~~f~~~~~rriV~~Gd~gy----~~~s~PtPIPva~v~en~~~y~~~ 161 (486)
T COG4882 90 GRVVVARAPQVVDDLKAAAILAAEAGAEALLFESRDPRRIVTGGDWGY----SVSSSPTPIPVAVVPENYSRYAEE 161 (486)
T ss_pred CeEEeeeccccHHHHHHHHHHHHHcCCeEEEEecCCceeEEecccccc----cCCCCCCCcceEEeccCcchhhcc
Confidence 67777777554444443 36889999999998766544444321110 011135689999999998876654
No 43
>PRK03955 hypothetical protein; Reviewed
Probab=27.10 E-value=4.3e+02 Score=23.47 Aligned_cols=67 Identities=16% Similarity=0.242 Sum_probs=40.1
Q ss_pred CcEEEEe--cCCCCHHHHHHHHHHcC-CcEEEEEeCCCCcceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHh
Q 015274 96 PNFVLVD--RGDCFFALKVWNAQKAG-ASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALS 172 (410)
Q Consensus 96 ~~IvLV~--RG~CsF~~Kv~nAQ~aG-A~aVIV~dn~~e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~ 172 (410)
++|++.. ||.|.=.-=.+.+-+.| |-++||.... +++.+.+.- --.||++.-.. .+.|+
T Consensus 51 gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~~~-~~ils~GaI-----------vAgIP~V~~~~------~~~l~ 112 (131)
T PRK03955 51 GKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINLEA-EPIVATGAI-----------ISGIPLVDKVD------ISKLK 112 (131)
T ss_pred CEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEecC-CceeEeeee-----------ecCCceEcccc------ceecC
Confidence 7888876 78887555555544444 4466666543 445444321 01688886222 56788
Q ss_pred CCCeEEEE
Q 015274 173 GGEMVNVN 180 (410)
Q Consensus 173 ~g~~V~v~ 180 (410)
.|..|++.
T Consensus 113 ~G~~V~Vd 120 (131)
T PRK03955 113 DGDRVVVD 120 (131)
T ss_pred CCCEEEEe
Confidence 89887654
No 44
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=26.47 E-value=47 Score=32.04 Aligned_cols=98 Identities=18% Similarity=0.144 Sum_probs=55.8
Q ss_pred chhhHHHHHHHhhhhhhcccCCCCcchhhhHHHhcccCCCCchhcHHHHHHHHHHHcCCCHHHHHhhhccccCCccccch
Q 015274 279 GKDVVLENLRQLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILRSEPLWHNI 358 (410)
Q Consensus 279 G~dvV~E~lRqlCi~k~~~~~~~~~~WW~Yv~~F~~~C~~~~~~y~~~Cs~~v~k~lgid~~~v~~C~~~s~~~~~~~~~ 358 (410)
|..-=.=|.-|.|+=+.-. ....|..+ .+|-++.+.+++-.. -.+..+++.++|++|.......+|-..-
T Consensus 98 G~~EC~lN~LqaCvI~~l~---~~~~~l~~-----i~C~~~~~~~~~~~~--C~~~~~~~~~~i~~Ca~s~~g~~L~~~~ 167 (220)
T KOG3160|consen 98 GEEECKLNKLQACVIDTLP---DQSDQLPF-----IRCIQGKQKLSEAED--CLEKYGLNEKKIRECANSRLGAKLLLKY 167 (220)
T ss_pred CHHHHhhhHHHHHHHHhhh---chHhhhce-----ehhhhcccchhHHHH--HHhhcCCCHHHHHHHhcCchHHHHHHHH
Confidence 4444455677888765321 01123332 348765445543221 4556788899999999887765532222
Q ss_pred hhhhhcccccccccccccCCCceEEEEEEEEcCCCCcccccccc
Q 015274 359 CLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDWSPSFFQSKI 402 (410)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 402 (410)
...+. ...--+...|+|.|||. .+|+..
T Consensus 168 ~~~T~------------~~~p~~~~VPwi~vNg~----~~~~~~ 195 (220)
T KOG3160|consen 168 AQETA------------ALAPPHPWVPWILVNGQ----PLQDAE 195 (220)
T ss_pred HHhhc------------ccCCCCCCcCeEEECCc----chHHHH
Confidence 12222 12334567899999999 666654
No 45
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=25.46 E-value=57 Score=32.78 Aligned_cols=54 Identities=19% Similarity=0.220 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHcCCcEEEEEeCCC------CcceecCCCccccccccccCCcceeEEEecHHH
Q 015274 107 FFALKVWNAQKAGASAVLVADDIE------EALITMDTPEEDISSAKYIENITIPSALIDKSF 163 (410)
Q Consensus 107 sF~~Kv~nAQ~aGA~aVIV~dn~~------e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~d 163 (410)
+-.++++-|++|||.||+.-...+ +....|++|++- -+-...++||++.+-|..
T Consensus 18 ~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I---~~I~~~V~iPVig~~kig 77 (287)
T TIGR00343 18 VNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMI---KEIMDAVSIPVMAKVRIG 77 (287)
T ss_pred CCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHH---HHHHHhCCCCEEEEeecc
Confidence 457889999999999999965543 334577776531 111235799999987765
No 46
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.74 E-value=71 Score=28.69 Aligned_cols=70 Identities=10% Similarity=-0.006 Sum_probs=40.7
Q ss_pred chhhhHHHhcccCCCCchhcH-HHHHHHHHHHcCCCHHHHHhhhcccc-CCccccchhhhhhcccccccccc
Q 015274 304 VWWDYVTDFQIRCPMKDKKYN-KECAAAVIKSLGLDAKKIENLTWILR-SEPLWHNICLWTVNLKFQITSTM 373 (410)
Q Consensus 304 ~WW~Yv~~F~~~C~~~~~~y~-~~Cs~~v~k~lgid~~~v~~C~~~s~-~~~~~~~~~~~~~~~~~~~~~~~ 373 (410)
..|+|+..............+ .+=..++.+++|+|.+++.+++.+.. .+.+.++..+...++..+.|..+
T Consensus 103 ~~~~~~~~l~~a~~~~~~~i~~~~~l~~ia~~~Gld~~~~~~~~~s~~~~~~l~~~~~~a~~~gv~g~Ptfv 174 (193)
T cd03025 103 RLLEMLKAIQRAHYVEGRDLADTEVLRELAIELGLDVEEFLEDFQSDEAKQAIQEDQKLARELGINGFPTLV 174 (193)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHcChHHHHHHHHHHHHHHHcCCCccCEEE
Confidence 455666654333222222222 22345677889999999999987654 34444555555566666666655
No 47
>PRK10824 glutaredoxin-4; Provisional
Probab=21.52 E-value=1.7e+02 Score=25.33 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=41.7
Q ss_pred CcEEEEecC-----CCCHHHHHHHHH-HcCCcEEE-EEeCCCCcceecCCCccccccccccCCcceeEEEecHHH---HH
Q 015274 96 PNFVLVDRG-----DCFFALKVWNAQ-KAGASAVL-VADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSF---GE 165 (410)
Q Consensus 96 ~~IvLV~RG-----~CsF~~Kv~nAQ-~aGA~aVI-V~dn~~e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~d---G~ 165 (410)
..|++...| .|.|..++...- +.|...-. -.++..+-.-.|. ......|+|.++|.... .+
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~---------~~sg~~TVPQIFI~G~~IGG~d 85 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELP---------KYANWPTFPQLWVDGELVGGCD 85 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHH---------HHhCCCCCCeEEECCEEEcChH
Confidence 578888888 899999998765 55654322 2222111000111 01124699999998863 45
Q ss_pred HHHHHHhCCC
Q 015274 166 TLKKALSGGE 175 (410)
Q Consensus 166 ~L~~~L~~g~ 175 (410)
.|.++.++|+
T Consensus 86 dl~~l~~~G~ 95 (115)
T PRK10824 86 IVIEMYQRGE 95 (115)
T ss_pred HHHHHHHCCC
Confidence 5666666654
No 48
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=21.27 E-value=3e+02 Score=31.00 Aligned_cols=100 Identities=16% Similarity=0.326 Sum_probs=62.1
Q ss_pred hhHHHHHHhhHHHHHhhcCCceeEeeEEEEeccCcccccccccccccccCCcccCCCCCCCCCCCCcchhhHHHHHHHhh
Q 015274 212 MLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCINHGRYCAPDPEQDFSSGYEGKDVVLENLRQLC 291 (410)
Q Consensus 212 ~~~~fi~~f~~~aq~l~~~g~~~FtPhy~~~~c~~~~~~~~~~~~~Ci~~GrYCa~dP~~~~~~~~sG~dvV~E~lRqlC 291 (410)
....|.++.....+.|.. =.||||- | |--..-..|+- =-...|++.||.+.
T Consensus 549 v~~~f~~sL~~L~~~l~~-----t~phfIR--C--------------IKPN~~k~~~~--------Fd~~~V~~QLr~~G 599 (677)
T cd01387 549 VAAKFQQSLLDLVEKMER-----CNPLFVR--C--------------LKPNHKKEPGL--------FEPDVVMAQLRYSG 599 (677)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCCeEEE--E--------------ECCCCcCCccc--------cChHHHHHHHHHhc
Confidence 455677777776666654 2699993 2 21111112211 11378999999999
Q ss_pred hhhh---cccC-CCCcchhhhHHHhcccCCCCchhc--HHHHHHHHHHHcCCCHH
Q 015274 292 VFKV---AKES-KKPWVWWDYVTDFQIRCPMKDKKY--NKECAAAVIKSLGLDAK 340 (410)
Q Consensus 292 i~k~---~~~~-~~~~~WW~Yv~~F~~~C~~~~~~y--~~~Cs~~v~k~lgid~~ 340 (410)
+-+. ..+. ..+..+-+++..|..-|+.+.... .+.|...+++.++++.+
T Consensus 600 vlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~ 654 (677)
T cd01387 600 VLETVRIRKEGFPVRLPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVEPP 654 (677)
T ss_pred hHHHHHHHHccCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCCcc
Confidence 8753 2221 256678899999999888432221 26888889988887643
No 49
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=21.19 E-value=2.8e+02 Score=21.95 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=25.0
Q ss_pred cCCcceeEEEecHHHHHHHHHHHhCCCeEEEEEEe
Q 015274 149 IENITIPSALIDKSFGETLKKALSGGEMVNVNLDW 183 (410)
Q Consensus 149 ~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l~~ 183 (410)
.+++.+|- ..-|+.|+++..+|+.+.+++--
T Consensus 26 k~DlklP~----~elg~~I~~~f~~gk~~~vtV~s 56 (69)
T cd04468 26 REDLKLPE----GELGKEIREKFDEGKDVLVTVLS 56 (69)
T ss_pred ccCCcCCc----HHHHHHHHHHHhCCCcEEEEEEc
Confidence 46788993 68899999999999888777643
Done!