Query 015274
Match_columns 410
No_of_seqs 291 out of 1293
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 09:44:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 1E-23 3.4E-28 195.4 17.1 145 30-184 31-186 (194)
2 3iib_A Peptidase M28; YP_92679 99.2 6.1E-11 2.1E-15 122.1 14.9 130 34-183 78-225 (444)
3 2ek8_A Aminopeptidase; metallo 99.2 3.1E-10 1.1E-14 115.7 16.0 102 61-183 90-195 (421)
4 3fed_A Glutamate carboxypeptid 99.0 4.9E-10 1.7E-14 121.6 8.1 107 61-173 124-268 (707)
5 3kas_A Transferrin receptor pr 98.9 2.1E-09 7.2E-14 115.5 7.7 103 61-172 105-230 (640)
6 3i6s_A Subtilisin-like proteas 98.0 6.2E-06 2.1E-10 88.8 7.9 97 67-183 260-356 (649)
7 1xf1_A C5A peptidase, SCP; hyd 97.8 0.00013 4.3E-09 81.6 12.3 65 93-169 278-343 (926)
8 1y9z_A Alkaline serine proteas 97.7 8.5E-05 2.9E-09 76.0 8.9 76 93-180 271-355 (441)
9 3gha_A Disulfide bond formatio 91.4 1.7 5.8E-05 39.1 11.3 86 287-392 84-172 (202)
10 3bci_A Disulfide bond protein 90.9 1.5 5.1E-05 38.3 10.1 54 288-346 67-124 (186)
11 3vta_A Cucumisin; subtilisin-l 88.2 0.89 3.1E-05 48.3 7.6 61 94-173 280-340 (621)
12 4dvc_A Thiol:disulfide interch 77.4 0.66 2.3E-05 39.9 1.0 55 325-394 106-161 (184)
13 3l9v_A Putative thiol-disulfid 67.6 2.6 9E-05 37.2 2.5 54 325-393 100-155 (189)
14 3l9s_A Thiol:disulfide interch 65.1 2.3 7.8E-05 37.9 1.6 54 325-393 107-161 (191)
15 3h93_A Thiol:disulfide interch 62.8 2.6 8.8E-05 36.8 1.4 75 304-393 86-162 (192)
16 3hd5_A Thiol:disulfide interch 62.3 2.7 9.3E-05 36.7 1.5 54 325-393 107-161 (195)
17 4b2v_A S64; toxin, ICK; NMR {S 54.9 5 0.00017 25.3 1.3 15 256-271 1-15 (32)
18 2rem_A Disulfide oxidoreductas 54.3 4.1 0.00014 35.3 1.2 50 328-392 114-164 (193)
19 3c7m_A Thiol:disulfide interch 52.8 5 0.00017 34.7 1.6 54 325-393 118-172 (195)
20 3hz8_A Thiol:disulfide interch 51.6 5.5 0.00019 35.2 1.7 54 325-393 109-164 (193)
21 3gyk_A 27KDA outer membrane pr 48.9 1.2E+02 0.004 25.3 10.1 70 304-392 83-153 (175)
22 3gmf_A Protein-disulfide isome 46.4 5.4 0.00018 36.0 0.7 21 330-350 128-148 (205)
23 2znm_A Thiol:disulfide interch 46.2 6.5 0.00022 34.1 1.3 50 328-392 108-159 (195)
24 3feu_A Putative lipoprotein; a 38.2 5.1 0.00017 35.2 -0.8 55 324-393 107-162 (185)
25 1un2_A DSBA, thiol-disulfide i 38.1 9.8 0.00033 34.0 1.1 50 329-393 10-60 (197)
26 2imf_A HCCA isomerase, 2-hydro 37.6 10 0.00034 33.5 1.1 49 329-392 127-176 (203)
27 3f4s_A Alpha-DSBA1, putative u 33.7 17 0.00057 33.2 1.9 47 304-350 103-151 (226)
28 3fz5_A Possible 2-hydroxychrom 33.0 14 0.00049 32.6 1.3 74 304-392 107-182 (202)
29 3gl5_A Putative DSBA oxidoredu 31.1 21 0.00072 32.7 2.2 75 304-393 115-193 (239)
30 4f87_A Plycb; lysin, bacteriop 29.5 28 0.00095 25.6 2.1 21 152-172 51-71 (72)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.91 E-value=1e-23 Score=195.38 Aligned_cols=145 Identities=21% Similarity=0.289 Sum_probs=114.0
Q ss_pred EEecCeEEEEc--CCC---cccceeccccCCCCCCCCCceEEEEEccC--CCcCCCCCCCCCCcccc-CCCCCCCcEEEE
Q 015274 30 VVEKNSLMVTS--PEK---IKGSHDSAIGNFGIPQYGGSMAGAVTYPK--ENRKGCREFGDFGISFK-AKPGALPNFVLV 101 (410)
Q Consensus 30 vve~~~l~V~~--P~~---l~~~y~~~~AnFG~p~yg~~l~G~lv~~~--~~~~GC~~~~~~~~~~~-~~p~~~~~IvLV 101 (410)
...+..+.|.. |.. ....+....|+||.+.+.++++|.|+++. ++.+||++.+++..... ..+...++||||
T Consensus 31 ~~~~A~vn~sy~d~~~~~n~t~~~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV 110 (194)
T 3icu_A 31 AVWTAYLNVSWRVPHTGVNRTVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALI 110 (194)
T ss_dssp CEEEEEEEEEEECCSSCTTCEEEEEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEE
T ss_pred eEEEEEEEEEEECCCCCccceeeecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEE
Confidence 34556666655 332 22357789999999999999999999986 47899999876431111 011245899999
Q ss_pred ecCC-CCHHHHHHHHHHcCCcEEEEEeCCC--CcceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCCeEE
Q 015274 102 DRGD-CFFALKVWNAQKAGASAVLVADDIE--EALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVN 178 (410)
Q Consensus 102 ~RG~-CsF~~Kv~nAQ~aGA~aVIV~dn~~--e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~ 178 (410)
+||+ |+|.+|++|||++||+||||||+.. +.+.+|..++ ..+||++||++++|+.|+++|++|.+|+
T Consensus 111 ~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~----------~~~IPsv~Is~~~G~~L~~~L~~G~~Vt 180 (194)
T 3icu_A 111 QRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPG----------AVDIVAIMIGNLKGTKILQSIQRGIQVT 180 (194)
T ss_dssp ESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTT----------CCSSEEEEECHHHHHHHHHHHHTTCCEE
T ss_pred ECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCC----------CCceeEEEECHHHHHHHHHHHHCCCeEE
Confidence 9999 9999999999999999999999852 3456886432 2579999999999999999999999999
Q ss_pred EEEEec
Q 015274 179 VNLDWR 184 (410)
Q Consensus 179 v~l~~~ 184 (410)
++|...
T Consensus 181 vti~vg 186 (194)
T 3icu_A 181 MVIEVG 186 (194)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 998873
No 2
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=99.25 E-value=6.1e-11 Score=122.10 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=88.3
Q ss_pred CeEEEEcCCCcccceeccccCCCCCCCCCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCC------
Q 015274 34 NSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCF------ 107 (410)
Q Consensus 34 ~~l~V~~P~~l~~~y~~~~AnFG~p~yg~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~Cs------ 107 (410)
.+++|+.|.. ..+......+++....++++|+||++. +...|.... + ....|+||||+||.|.
T Consensus 78 ~~~~~~~~~~--~~~~~~~l~~s~~tp~~~vta~lV~v~-~~~~~~~~~-~-------~dvkGKIVlv~~~~~~~~~~~~ 146 (444)
T 3iib_A 78 AKASILSPFP--QPLVVTALGGSIATPAQGLSATIVRFD-TLQDLQNAE-A-------GSLNDKIAFIDAKTERHRDGKG 146 (444)
T ss_dssp EEEEEEESSC--EEECEEECBTCCCCCTTCEEEEEEEES-SHHHHHTSC-T-------TTTTTCEEEECCCCCCCTTCHH
T ss_pred eEEEEeCCCC--ceEEEEeccCCCCCCCCCeEEEEEecC-CHHHHhhcc-c-------cccCccEEEEeCCCCCCccccc
Confidence 4566666643 234333334554334578999999874 333344321 1 1334999999999995
Q ss_pred ---HHHHH----HHHHHcCCcEEEEEeCCCCc--c-e--ecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhCCC
Q 015274 108 ---FALKV----WNAQKAGASAVLVADDIEEA--L-I--TMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGE 175 (410)
Q Consensus 108 ---F~~Kv----~nAQ~aGA~aVIV~dn~~e~--l-~--tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~g~ 175 (410)
|..|. .+|+++||+|+||+++..+. . . +|..+ .....||++.|+.++|+.|++.++.|+
T Consensus 147 y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~---------~~~~~IP~~~Is~~da~~L~~~l~~g~ 217 (444)
T 3iib_A 147 YGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYE---------EGVTAIPAAAISNPDADLINAMLKRDK 217 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCC---------TTSCCCCEEEECHHHHHHHHHHHTTTC
T ss_pred ccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccC---------CCCCCCCeEEecHHHHHHHHHHHhCCC
Confidence 77774 57999999999999976432 1 1 22211 124689999999999999999999887
Q ss_pred eEEEEEEe
Q 015274 176 MVNVNLDW 183 (410)
Q Consensus 176 ~V~v~l~~ 183 (410)
++.+++..
T Consensus 218 ~~~v~l~~ 225 (444)
T 3iib_A 218 EVVISLEL 225 (444)
T ss_dssp CCEEEEEE
T ss_pred CeEEEEEE
Confidence 77777776
No 3
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=99.18 E-value=3.1e-10 Score=115.72 Aligned_cols=102 Identities=25% Similarity=0.296 Sum_probs=74.5
Q ss_pred CCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcce-ecCCC
Q 015274 61 GGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALI-TMDTP 139 (410)
Q Consensus 61 g~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~l~-tM~~p 139 (410)
.+.++|.|+++. .| .+.+.... +..|+||||+||+|+|..|+.+|+++||+||||+++.+.++. +++.+
T Consensus 90 ~g~v~a~lv~~~---~G-~~~D~~~~------dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~ 159 (421)
T 2ek8_A 90 NSDVTAELVYVG---LG-TTADVAGK------DLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGS 159 (421)
T ss_dssp CEEEEEEEEECT---TC-CTTTTTTS------CCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSC
T ss_pred CCCcceEEEECC---CC-ChhhcCCC------CcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCC
Confidence 368999998752 22 22222211 334999999999999999999999999999999998754432 22211
Q ss_pred ccccccccccCCcceeEEEecHHHHHHHHHHH---hCCCeEEEEEEe
Q 015274 140 EEDISSAKYIENITIPSALIDKSFGETLKKAL---SGGEMVNVNLDW 183 (410)
Q Consensus 140 ~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L---~~g~~V~v~l~~ 183 (410)
....||++.|+.++|+.|++.+ +.| ++.+++..
T Consensus 160 ----------~~~~IP~~~Is~~~a~~L~~~l~~~~~g-~~~v~l~~ 195 (421)
T 2ek8_A 160 ----------DASFVAAVGITKQEGDALAANLRAGEKI-TATVKVAG 195 (421)
T ss_dssp ----------CTTCCEEEEECHHHHHHHHHHHHTTCCC-EEEEEEES
T ss_pred ----------CCCCccEEEeCHHHHHHHHHHhhhhccC-Cccccccc
Confidence 2468999999999999999999 444 45555554
No 4
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.99 E-value=4.9e-10 Score=121.61 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=70.3
Q ss_pred CCceEEEEEccCCCcCCCCCCCCCCccccC--CCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCC-------
Q 015274 61 GGSMAGAVTYPKENRKGCREFGDFGISFKA--KPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEE------- 131 (410)
Q Consensus 61 g~~l~G~lv~~~~~~~GC~~~~~~~~~~~~--~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e------- 131 (410)
.|+++|.|||+ ..||.. +.. .++. ..+..|+||||+||.|+|..|+.||+++||+|||||++..+
T Consensus 124 ~G~v~g~lV~v---~~G~~~-Df~--~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~ 197 (707)
T 3fed_A 124 QGMPEGDLVYV---NYARTE-DFF--KLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQ 197 (707)
T ss_dssp CBCCEECEEEC---TTCCHH-HHH--HHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCC
T ss_pred CCceEEEEEEe---cCCchh-hHH--HHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccc
Confidence 47899999996 356632 110 0000 12345999999999999999999999999999999986311
Q ss_pred ----------------cceecCCCcc--cc---c--------cccccCCcceeEEEecHHHHHHHHHHHhC
Q 015274 132 ----------------ALITMDTPEE--DI---S--------SAKYIENITIPSALIDKSFGETLKKALSG 173 (410)
Q Consensus 132 ----------------~l~tM~~p~~--~~---~--------~~~~~~~i~IPsvlIsk~dG~~L~~~L~~ 173 (410)
.+..+..+++ +| + ..+......||++-|+..+|+.|++.|..
T Consensus 198 ~yP~~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 198 PYPKGWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp BTTTSSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred cCCCCccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 0000001111 00 0 00111246999999999999999999864
No 5
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.87 E-value=2.1e-09 Score=115.51 Aligned_cols=103 Identities=21% Similarity=0.234 Sum_probs=68.9
Q ss_pred CCceEEEEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCc-ce-----
Q 015274 61 GGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEA-LI----- 134 (410)
Q Consensus 61 g~~l~G~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~-l~----- 134 (410)
.+.++|.|||+ ..||.. +.. .++ -+..|+||||+||.|+|..|+.+|+++||+|||||++..+. ..
T Consensus 105 ~g~v~g~lV~v---g~G~~~-D~~--~l~--vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~ 176 (640)
T 3kas_A 105 AATVTGKLVHA---NFGTKK-DFE--DLY--TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELS 176 (640)
T ss_dssp CEEEEECEEEC---TTCCHH-HHH--TCS--SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCC
T ss_pred CCceEEEEEEe---cCCChh-hHH--Hhh--cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccc
Confidence 36789999986 356532 111 111 13449999999999999999999999999999999976421 10
Q ss_pred -----ec--CCCcccc---c--c-----ccccCCcceeEEEecHHHHHHHHHHHh
Q 015274 135 -----TM--DTPEEDI---S--S-----AKYIENITIPSALIDKSFGETLKKALS 172 (410)
Q Consensus 135 -----tM--~~p~~~~---~--~-----~~~~~~i~IPsvlIsk~dG~~L~~~L~ 172 (410)
.+ +.|. ++ + . ........||++.|+.++|+.|++.+.
T Consensus 177 ~~G~~~~~~Gdp~-tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 177 FFGHAHLGTGDPY-TPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCEECCSSSSCSC-CCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred cccccccCCCCCC-CCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 01 0110 00 0 0 001123589999999999999998774
No 6
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=98.04 E-value=6.2e-06 Score=88.79 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=71.7
Q ss_pred EEEccCCCcCCCCCCCCCCccccCCCCCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcceecCCCccccccc
Q 015274 67 AVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSA 146 (410)
Q Consensus 67 ~lv~~~~~~~GC~~~~~~~~~~~~~p~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~l~tM~~p~~~~~~~ 146 (410)
.|+|+. ....|.+.......+ ++.++|||++||.|.|.+|..+++++||.++|++|+. +.+. .
T Consensus 260 plv~~~-~~~~C~~~~l~~~~v----dl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~-~~~~--~--------- 322 (649)
T 3i6s_A 260 PVIYNK-TLSDCSSEELLSQVE----NPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDP-GVFR--S--------- 322 (649)
T ss_dssp EEECCT-TTTTCCCHHHHTTSS----SGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCG-GGGG--C---------
T ss_pred eeEecc-ccccccccccccccc----ccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCc-cccc--c---------
Confidence 455543 567888743211111 1248999999999999999999999999999999876 2111 0
Q ss_pred cccCCcceeEEEecHHHHHHHHHHHhCCCeEEEEEEe
Q 015274 147 KYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDW 183 (410)
Q Consensus 147 ~~~~~i~IPsvlIsk~dG~~L~~~L~~g~~V~v~l~~ 183 (410)
....+|+++|+.++|+.|++++.++....+++..
T Consensus 323 ---~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~ 356 (649)
T 3i6s_A 323 ---ATFPNPGVVVNKKEGKQVINYVKNSVTPTATITF 356 (649)
T ss_dssp ---CCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred ---ccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEee
Confidence 1358999999999999999999987655555554
No 7
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.76 E-value=0.00013 Score=81.58 Aligned_cols=65 Identities=32% Similarity=0.472 Sum_probs=53.6
Q ss_pred CCCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcc-eecCCCccccccccccCCcceeEEEecHHHHHHHHH
Q 015274 93 GALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEAL-ITMDTPEEDISSAKYIENITIPSALIDKSFGETLKK 169 (410)
Q Consensus 93 ~~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~l-~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~ 169 (410)
...++|||++||.|+|.+|+.+|+++||.++|++|+..+.. +.+. ....||+++|++.+|+.|+.
T Consensus 278 ~v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~------------~~~~iP~~~i~~~~g~~l~~ 343 (926)
T 1xf1_A 278 DVKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELP------------NVDQMPAAFISRKDGLLLKD 343 (926)
T ss_dssp TCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECC------------CSTTCCEEEECHHHHHHHHH
T ss_pred hcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccC------------ccccccEEEEeHHHHHHHHh
Confidence 34489999999999999999999999999999998865422 2221 13589999999999998884
No 8
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.69 E-value=8.5e-05 Score=75.98 Aligned_cols=76 Identities=25% Similarity=0.301 Sum_probs=59.0
Q ss_pred CCCCcEEEEecCCC-----CHHHHHHHHHHcCCcEEEEEeCCCCc-c---eecCCCccccccccccCCcceeEEEecHHH
Q 015274 93 GALPNFVLVDRGDC-----FFALKVWNAQKAGASAVLVADDIEEA-L---ITMDTPEEDISSAKYIENITIPSALIDKSF 163 (410)
Q Consensus 93 ~~~~~IvLV~RG~C-----sF~~Kv~nAQ~aGA~aVIV~dn~~e~-l---~tM~~p~~~~~~~~~~~~i~IPsvlIsk~d 163 (410)
...++|+|++||.| .|..|+.+|+++||+++|||++...+ + ..++. .....||+++|++++
T Consensus 271 ~~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~----------~~~~~~p~~~v~~~~ 340 (441)
T 1y9z_A 271 NMANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDA----------NSDITVPSVSVDRAT 340 (441)
T ss_dssp CCTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECT----------TCCCCSCEEEECHHH
T ss_pred CccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCcccccccccccc----------ccCccccEEEEeHHH
Confidence 45699999999987 89999999999999999999886421 1 11211 134689999999999
Q ss_pred HHHHHHHHhCCCeEEEE
Q 015274 164 GETLKKALSGGEMVNVN 180 (410)
Q Consensus 164 G~~L~~~L~~g~~V~v~ 180 (410)
|+.|++++.+ .++++
T Consensus 341 g~~l~~~~~~--~~t~~ 355 (441)
T 1y9z_A 341 GLALKAKLGQ--STTVS 355 (441)
T ss_dssp HHHHHTTTTS--EEEEE
T ss_pred HHHHHHHhcC--Ccccc
Confidence 9999998853 45443
No 9
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=91.44 E-value=1.7 Score=39.10 Aligned_cols=86 Identities=13% Similarity=0.108 Sum_probs=49.7
Q ss_pred HHHhhhhhhcccCCCCcchhhhHHHhcccCCCCchh-cHHHHHHHHHHH-cCCCHHHHHhhhccccC-Cccccchhhhhh
Q 015274 287 LRQLCVFKVAKESKKPWVWWDYVTDFQIRCPMKDKK-YNKECAAAVIKS-LGLDAKKIENLTWILRS-EPLWHNICLWTV 363 (410)
Q Consensus 287 lRqlCi~k~~~~~~~~~~WW~Yv~~F~~~C~~~~~~-y~~~Cs~~v~k~-lgid~~~v~~C~~~s~~-~~~~~~~~~~~~ 363 (410)
.--.|+++.... ++|+|....-..=...... .+.+=-.++.++ +|+|.+++++|+.+... ..+..+..+.+.
T Consensus 84 ~aa~a~~~~~~~-----~f~~~~~aLf~~~~~~~~~~~~~~~L~~~a~~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~ 158 (202)
T 3gha_A 84 LASEEVWKEDPD-----SFWDFHEKLFEKQPDTEQEWVTPGLLGDLAKSTTKIKPETLKENLDKETFASQVEKDSDLNQK 158 (202)
T ss_dssp HHHHHHHHHCGG-----GHHHHHHHHHHHCCSSSSCCCCHHHHHHHHHHHSSSCHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHH-----HHHHHHHHHHHhCccccccccCHHHHHHHHHHhcCCCHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 334577766545 8999987643322211111 234445667778 99999999999976542 222222211111
Q ss_pred cccccccccccccCCCceEEEEEEEEcCC
Q 015274 364 NLKFQITSTMNVHDQGKSSIFVTISIDTD 392 (410)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 392 (410)
-.|+=-||++|||+
T Consensus 159 ---------------~gV~gtPtfvvnG~ 172 (202)
T 3gha_A 159 ---------------MNIQATPTIYVNDK 172 (202)
T ss_dssp ---------------TTCCSSCEEEETTE
T ss_pred ---------------cCCCcCCEEEECCE
Confidence 12344599999998
No 10
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=90.86 E-value=1.5 Score=38.25 Aligned_cols=54 Identities=20% Similarity=0.155 Sum_probs=34.0
Q ss_pred HHhhhhhhcccCCCCcchhhhHHHhcccCCCC-chhcHHHHHHHHHHHcCCCHHH---HHhhh
Q 015274 288 RQLCVFKVAKESKKPWVWWDYVTDFQIRCPMK-DKKYNKECAAAVIKSLGLDAKK---IENLT 346 (410)
Q Consensus 288 RqlCi~k~~~~~~~~~~WW~Yv~~F~~~C~~~-~~~y~~~Cs~~v~k~lgid~~~---v~~C~ 346 (410)
--+|+.+...+ ++|+|....-..=... ....+.+=-.++.+++|+|.++ +++|+
T Consensus 67 a~~~a~~~~~~-----~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~ 124 (186)
T 3bci_A 67 ASHAVLMYAPK-----SFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDY 124 (186)
T ss_dssp HHHHHHHHCGG-----GHHHHHHHHHHTCCCTTSCCCCHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCHH-----HHHHHHHHHHhcCcccCCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34566665433 6888887643322111 1123345566788889999999 99999
No 11
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=88.18 E-value=0.89 Score=48.28 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=49.2
Q ss_pred CCCcEEEEecCCCCHHHHHHHHHHcCCcEEEEEeCCCCcceecCCCccccccccccCCcceeEEEecHHHHHHHHHHHhC
Q 015274 94 ALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSG 173 (410)
Q Consensus 94 ~~~~IvLV~RG~CsF~~Kv~nAQ~aGA~aVIV~dn~~e~l~tM~~p~~~~~~~~~~~~i~IPsvlIsk~dG~~L~~~L~~ 173 (410)
..++|+|++|+ |..|..+++.+||.++|++++..+. .....+|+++|+..+|..|+.++..
T Consensus 280 v~gkivl~~~~---~~~~~~~~~~~Ga~gvi~~~~~~~~----------------~~~~~lP~~~v~~~~g~~i~~~~~~ 340 (621)
T 3vta_A 280 LKGKIVVCEAS---FGPHEFFKSLDGAAGVLMTSNTRDY----------------ADSYPLPSSVLDPNDLLATLRYIYS 340 (621)
T ss_dssp TTTSEEECSSC---CCHHHHHHHHTTCSEEEEECSCCSS----------------CCCCSSSEEEECHHHHHHHHHHHHH
T ss_pred ccceEEEEecC---CChhHHhhhhcceeEEEEEecCCCc----------------ccccccceEEECHHHHHHHHHHHhc
Confidence 34899998764 6688999999999999999875331 1235799999999999999998865
No 12
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=77.44 E-value=0.66 Score=39.85 Aligned_cols=55 Identities=7% Similarity=0.001 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCCHHHHHhhhcccc-CCccccchhhhhhcccccccccccccCCCceEEEEEEEEcCCCC
Q 015274 325 KECAAAVIKSLGLDAKKIENLTWILR-SEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDWS 394 (410)
Q Consensus 325 ~~Cs~~v~k~lgid~~~v~~C~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 394 (410)
.+=..++.+.+|+|.+++++|+.+.. .+.+..+..+.+..+ |+==||++|||++-
T Consensus 106 ~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~g---------------v~gTPtfiINGky~ 161 (184)
T 4dvc_A 106 EQELRQIFLDEGIDAAKFDAAYNGFAVDSMVHRFDKQFQDSG---------------LTGVPAVVVNNRYL 161 (184)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHT---------------CCSSSEEEETTTEE
T ss_pred HHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcC---------------CCcCCEEEECCEEe
Confidence 44456788899999999999997543 233233332222221 22359999999853
No 13
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=67.58 E-value=2.6 Score=37.16 Aligned_cols=54 Identities=7% Similarity=-0.014 Sum_probs=33.4
Q ss_pred HHHHHHHHHHc-CCCHHHHHhhhccccC-CccccchhhhhhcccccccccccccCCCceEEEEEEEEcCCC
Q 015274 325 KECAAAVIKSL-GLDAKKIENLTWILRS-EPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDW 393 (410)
Q Consensus 325 ~~Cs~~v~k~l-gid~~~v~~C~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 393 (410)
.+=-.++.+++ |+|.+++++|+.+... ..+.++..+.+.+ | |+=-||++|||++
T Consensus 100 ~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~---------g------v~GtPt~~vng~~ 155 (189)
T 3l9v_A 100 PDDVRRVFMSATGISRGEYDRSIKSPAVNDMVALQERLFKEY---------G------VRGTPSVYVRGRY 155 (189)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHTTSHHHHHHHHHHHHHHHHT---------T------CCSSSEEEETTTE
T ss_pred HHHHHHHHHHccCCCHHHHHHHHhhHHHHHHHHHHHHHHHHh---------C------CCccCEEEECCEE
Confidence 44456777888 9999999999975432 2222222111111 1 3335999999985
No 14
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=65.11 E-value=2.3 Score=37.86 Aligned_cols=54 Identities=4% Similarity=-0.094 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCCHHHHHhhhcccc-CCccccchhhhhhcccccccccccccCCCceEEEEEEEEcCCC
Q 015274 325 KECAAAVIKSLGLDAKKIENLTWILR-SEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDW 393 (410)
Q Consensus 325 ~~Cs~~v~k~lgid~~~v~~C~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 393 (410)
.+=-.++.+++|+|.+++++|+.+.. ...+..+..+.+.+ .|+=-||++|||++
T Consensus 107 ~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~---------------gv~gtPtfvvnG~~ 161 (191)
T 3l9s_A 107 AADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQQEKAAADL---------------QLQGVPAMFVNGKY 161 (191)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT---------------TCCSSSEEEETTTE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHh---------------CCcccCEEEECCEE
Confidence 33356788889999999999997543 22222222222211 23346999999995
No 15
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=62.78 E-value=2.6 Score=36.81 Aligned_cols=75 Identities=15% Similarity=0.031 Sum_probs=43.1
Q ss_pred chhhhHHHhcccCCCCchh-cHHHHHHHHHHHcCCCHHHHHhhhccccC-CccccchhhhhhcccccccccccccCCCce
Q 015274 304 VWWDYVTDFQIRCPMKDKK-YNKECAAAVIKSLGLDAKKIENLTWILRS-EPLWHNICLWTVNLKFQITSTMNVHDQGKS 381 (410)
Q Consensus 304 ~WW~Yv~~F~~~C~~~~~~-y~~~Cs~~v~k~lgid~~~v~~C~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (410)
++|.|....-..-...... .+.+=-.++.+.+|+|.+++++|+.+... ..+..+..+.+.+ .|
T Consensus 86 ~~~~~~~~lf~~~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~---------------gv 150 (192)
T 3h93_A 86 VEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAY---------------QV 150 (192)
T ss_dssp CCHHHHHHHHHHHHTSCCCCCSHHHHHHHHHTTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHH---------------TC
T ss_pred CHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHcCCCHHHHHHHhhCHHHHHHHHHHHHHHHHh---------------CC
Confidence 4677776543322111111 23566677888999999999999975432 2222222122111 13
Q ss_pred EEEEEEEEcCCC
Q 015274 382 SIFVTISIDTDW 393 (410)
Q Consensus 382 ~~~~t~~~~~~~ 393 (410)
+=-||++|||+.
T Consensus 151 ~gtPt~~vng~~ 162 (192)
T 3h93_A 151 TGVPTMVVNGKY 162 (192)
T ss_dssp CSSSEEEETTTE
T ss_pred CCCCeEEECCEE
Confidence 345999999983
No 16
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=62.30 E-value=2.7 Score=36.73 Aligned_cols=54 Identities=11% Similarity=0.059 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCCCHHHHHhhhccccC-CccccchhhhhhcccccccccccccCCCceEEEEEEEEcCCC
Q 015274 325 KECAAAVIKSLGLDAKKIENLTWILRS-EPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDW 393 (410)
Q Consensus 325 ~~Cs~~v~k~lgid~~~v~~C~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 393 (410)
.+=-.++.+++|+|.+++++|+.+... +.+..+..+.+.+ .|+=-||++|||++
T Consensus 107 ~~~l~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~---------------gv~gtPt~ving~~ 161 (195)
T 3hd5_A 107 KKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQRASQLAEAA---------------HIDGTPAFAVGGRY 161 (195)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCHHHHHHHHHHHHHHHHT---------------TCCSSSEEEETTTE
T ss_pred HHHHHHHHHHhCCCHHHHHHHHcCHHHHHHHHHHHHHHHHh---------------CCCcCceEEECCEE
Confidence 444567788999999999999975442 2222222222211 23446999999994
No 17
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=54.89 E-value=5 Score=25.26 Aligned_cols=15 Identities=53% Similarity=1.504 Sum_probs=12.0
Q ss_pred cccccCCcccCCCCCC
Q 015274 256 SQCINHGRYCAPDPEQ 271 (410)
Q Consensus 256 ~~Ci~~GrYCa~dP~~ 271 (410)
+.|+-+|.+| |||+.
T Consensus 1 secvenggfc-pdpek 15 (32)
T 4b2v_A 1 SECVENGGFC-PDPEK 15 (32)
T ss_dssp CCCCCTTCBC-CCTTT
T ss_pred CchhhcCCcC-CChHH
Confidence 3689999999 67874
No 18
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=54.30 E-value=4.1 Score=35.32 Aligned_cols=50 Identities=8% Similarity=-0.106 Sum_probs=30.8
Q ss_pred HHHHHHHcCCCHHHHHhhhccccC-CccccchhhhhhcccccccccccccCCCceEEEEEEEEcCC
Q 015274 328 AAAVIKSLGLDAKKIENLTWILRS-EPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTD 392 (410)
Q Consensus 328 s~~v~k~lgid~~~v~~C~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 392 (410)
-.++++++|+|.+++++|+.+... ..+..+..+.+.++ |+=.||++|||+
T Consensus 114 l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~g---------------v~gtPt~ving~ 164 (193)
T 2rem_A 114 LAVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKVR---------------PVGTPTIVVNGR 164 (193)
T ss_dssp HHHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHC---------------CSSSSEEEETTT
T ss_pred HHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHhC---------------CCCCCeEEECCE
Confidence 456777899999999999965432 22222222222222 334588888888
No 19
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=52.83 E-value=5 Score=34.65 Aligned_cols=54 Identities=9% Similarity=0.018 Sum_probs=32.4
Q ss_pred HHHHHHHHHHcCCCHHHHHhhhcccc-CCccccchhhhhhcccccccccccccCCCceEEEEEEEEcCCC
Q 015274 325 KECAAAVIKSLGLDAKKIENLTWILR-SEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDW 393 (410)
Q Consensus 325 ~~Cs~~v~k~lgid~~~v~~C~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 393 (410)
.++...+.+++|+|.+++++|+.+.. .+.+.++..+.+..+ |+=.||++|||+.
T Consensus 118 ~~~~~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~g---------------v~gtPt~~ing~~ 172 (195)
T 3c7m_A 118 AAFIKTGLDAAGMSQADFEAALKEPAVQETLEKWKASYDVAK---------------IQGVPAYVVNGKY 172 (195)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHGGGHHHHHH---------------HHCSSEEEETTTE
T ss_pred HHHHHhHHHHcCCCHHHHHHHHcChHHHHHHHHHHHHHHHcC---------------CCccCEEEECCEE
Confidence 44544447889999999999996543 222223332222222 2335899999883
No 20
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=51.63 E-value=5.5 Score=35.16 Aligned_cols=54 Identities=13% Similarity=-0.060 Sum_probs=33.8
Q ss_pred HHHHHHHHHHc-CCCHHHHHhhhccccC-CccccchhhhhhcccccccccccccCCCceEEEEEEEEcCCC
Q 015274 325 KECAAAVIKSL-GLDAKKIENLTWILRS-EPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDW 393 (410)
Q Consensus 325 ~~Cs~~v~k~l-gid~~~v~~C~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 393 (410)
.+=-.++.+++ |+|.+++++|+.+... +.+..+..+.+. -.|+=.||++|||++
T Consensus 109 ~~~l~~~a~~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~---------------~gv~gtPt~vvng~~ 164 (193)
T 3hz8_A 109 PEVLKKWLGEQTAFDGKKVLAAYESPESQARADKMQELTET---------------FQIDGVPTVIVGGKY 164 (193)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHSHHHHHHHHHHHHHHHH---------------TTCCSSSEEEETTTE
T ss_pred HHHHHHHHHHccCCCHHHHHHHHcCHHHHHHHHHHHHHHHH---------------hCCCcCCEEEECCEE
Confidence 44556778889 9999999999976542 222222211111 123446999999993
No 21
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=48.89 E-value=1.2e+02 Score=25.32 Aligned_cols=70 Identities=9% Similarity=0.026 Sum_probs=42.8
Q ss_pred chhhhHHHhcccCCCCchhcHHHHHHHHHHHcCCCHHHHHhhhcccc-CCccccchhhhhhcccccccccccccCCCceE
Q 015274 304 VWWDYVTDFQIRCPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILR-SEPLWHNICLWTVNLKFQITSTMNVHDQGKSS 382 (410)
Q Consensus 304 ~WW~Yv~~F~~~C~~~~~~y~~~Cs~~v~k~lgid~~~v~~C~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (410)
.+|.|...+-.. ....+.+=-.++.+.+|+|.+++++|+.+.. .+.+..+..+.+.++ |+
T Consensus 83 ~~~~~~~~lf~~----~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~g---------------v~ 143 (175)
T 3gyk_A 83 KYEAFHWALMGM----SGKANETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQSMALAQKLG---------------FN 143 (175)
T ss_dssp CHHHHHHHHHTC----SSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------------CC
T ss_pred HHHHHHHHHHhc----CCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcC---------------Cc
Confidence 577777664332 1223455667788999999999999997654 233334443333333 23
Q ss_pred EEEEEEEcCC
Q 015274 383 IFVTISIDTD 392 (410)
Q Consensus 383 ~~~t~~~~~~ 392 (410)
=.||++|||+
T Consensus 144 gtPt~~i~g~ 153 (175)
T 3gyk_A 144 GTPSFVVEDA 153 (175)
T ss_dssp SSSEEEETTE
T ss_pred cCCEEEECCE
Confidence 3577777775
No 22
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=46.42 E-value=5.4 Score=36.03 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=17.4
Q ss_pred HHHHHcCCCHHHHHhhhcccc
Q 015274 330 AVIKSLGLDAKKIENLTWILR 350 (410)
Q Consensus 330 ~v~k~lgid~~~v~~C~~~s~ 350 (410)
++.+++|+|.+++++|+.+..
T Consensus 128 ~~a~~~Gld~~~~~~~l~s~~ 148 (205)
T 3gmf_A 128 DFMAARGMDRSTLDRCLSNEA 148 (205)
T ss_dssp HHHHTTTCCHHHHHHHHTCHH
T ss_pred HHHHHcCCCHHHHHHHHcCHH
Confidence 456779999999999998654
No 23
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=46.23 E-value=6.5 Score=34.08 Aligned_cols=50 Identities=16% Similarity=0.000 Sum_probs=30.5
Q ss_pred HHHHHHHc-CCCHHHHHhhhccccC-CccccchhhhhhcccccccccccccCCCceEEEEEEEEcCC
Q 015274 328 AAAVIKSL-GLDAKKIENLTWILRS-EPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTD 392 (410)
Q Consensus 328 s~~v~k~l-gid~~~v~~C~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 392 (410)
..++++.+ |+|.+++++|+.+... ..+.++..+.+.+ .|+=.||++|||+
T Consensus 108 l~~~a~~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~---------------gv~gtPt~ving~ 159 (195)
T 2znm_A 108 AGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQKLTEQY---------------RIDSTPTVIVGGK 159 (195)
T ss_dssp HHHHHHTCSSSCHHHHHHHHTSHHHHHHHHHHHHHHHHT---------------TCCSSSEEEETTT
T ss_pred HHHHHHHcCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHc---------------CCCCCCeEEECCE
Confidence 45567788 9999999999965431 2222222222222 2344688888887
No 24
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=38.22 E-value=5.1 Score=35.23 Aligned_cols=55 Identities=13% Similarity=0.026 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCC-CHHHHHhhhccccCCccccchhhhhhcccccccccccccCCCceEEEEEEEEcCCC
Q 015274 324 NKECAAAVIKSLGL-DAKKIENLTWILRSEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDW 393 (410)
Q Consensus 324 ~~~Cs~~v~k~lgi-d~~~v~~C~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 393 (410)
+.+=-.++.+++|+ |.+++++++.+.-.+.+.++..+.+.++ |+=-||++|||++
T Consensus 107 ~~~~L~~~a~~~Gl~d~~~~~~~~~~~~~~~v~~~~~~a~~~g---------------v~GtPtfvvng~~ 162 (185)
T 3feu_A 107 QQEAYSKAFTSRGLVSPYDFNEEQRDTLIKKVDNAKMLSEKSG---------------ISSVPTFVVNGKY 162 (185)
T ss_dssp HHHHHHHHHHTTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHT---------------CCSSSEEEETTTE
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC---------------CCccCEEEECCEE
Confidence 34556678888998 9999999987522223222222222222 2335999999995
No 25
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=38.09 E-value=9.8 Score=34.01 Aligned_cols=50 Identities=6% Similarity=0.042 Sum_probs=30.3
Q ss_pred HHHHHHcCCCHHHHHhhhcccc-CCccccchhhhhhcccccccccccccCCCceEEEEEEEEcCCC
Q 015274 329 AAVIKSLGLDAKKIENLTWILR-SEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTDW 393 (410)
Q Consensus 329 ~~v~k~lgid~~~v~~C~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 393 (410)
.++.+.+|+|.+++++|+.+.- ...++++..+.+.. |.. | .||++|||++
T Consensus 10 ~~~a~~~Gld~~~~~~~l~s~~~~~~v~~~~~~a~~~---------gi~--g----vP~fvingk~ 60 (197)
T 1un2_A 10 RDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADV---------QLR--G----VPAMFVNGKY 60 (197)
T ss_dssp HHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHT---------TCC--S----SSEEEETTTE
T ss_pred HHHHHHcCCCHHHHHHHHhCHHHHHHHHHHHHHHHHc---------CCC--c----CCEEEEcceE
Confidence 4577889999999999985443 12222222111111 221 2 7999999983
No 26
>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*
Probab=37.56 E-value=10 Score=33.48 Aligned_cols=49 Identities=18% Similarity=0.055 Sum_probs=30.0
Q ss_pred HHHHHHcCCCHHHHHhhhcccc-CCccccchhhhhhcccccccccccccCCCceEEEEEEEEcCC
Q 015274 329 AAVIKSLGLDAKKIENLTWILR-SEPLWHNICLWTVNLKFQITSTMNVHDQGKSSIFVTISIDTD 392 (410)
Q Consensus 329 ~~v~k~lgid~~~v~~C~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 392 (410)
.++.+.+|+|.+++++|+.+.- .+.+.++....+.. .|+=.||++|||+
T Consensus 127 ~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~---------------Gv~G~Ptfvi~g~ 176 (203)
T 2imf_A 127 ALVSEKLGWDRSAFEHFLSSNAATERYDEQTHAAIER---------------KVFGVPTMFLGDE 176 (203)
T ss_dssp HHHHHHHTCCHHHHHHHHHSHHHHHHHHHHHHHHHHT---------------TCCSSSEEEETTE
T ss_pred HHHHHHcCCCHHHHHHHhcCHHHHHHHHHHHHHHHHC---------------CCCcCCEEEECCE
Confidence 4556678999999999998643 22222222221111 2344589999887
No 27
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=33.65 E-value=17 Score=33.24 Aligned_cols=47 Identities=2% Similarity=-0.127 Sum_probs=27.7
Q ss_pred chhhhHHHhccc--CCCCchhcHHHHHHHHHHHcCCCHHHHHhhhcccc
Q 015274 304 VWWDYVTDFQIR--CPMKDKKYNKECAAAVIKSLGLDAKKIENLTWILR 350 (410)
Q Consensus 304 ~WW~Yv~~F~~~--C~~~~~~y~~~Cs~~v~k~lgid~~~v~~C~~~s~ 350 (410)
++|+|....-.. -.......+.+=-.++.+.+|+|.+++++|+.+..
T Consensus 103 ~f~~~~~aLF~~q~~~~~~~~~~~~~L~~iA~~~Gld~~~~~~~l~s~~ 151 (226)
T 3f4s_A 103 DYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKK 151 (226)
T ss_dssp HHHHHHHHHHHTGGGSCSSSTTCCHHHHHHHHHTTCCHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHhCHhhcccccCcHHHHHHHHHHcCCCHHHHHHHHhCHH
Confidence 677776653321 11000011223445677889999999999997543
No 28
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}
Probab=33.00 E-value=14 Score=32.65 Aligned_cols=74 Identities=7% Similarity=-0.169 Sum_probs=42.0
Q ss_pred chhhhHHHhcccCCCCchh-cHHHHHHHHHHHcCCCHHHHHhhhcccc-CCccccchhhhhhcccccccccccccCCCce
Q 015274 304 VWWDYVTDFQIRCPMKDKK-YNKECAAAVIKSLGLDAKKIENLTWILR-SEPLWHNICLWTVNLKFQITSTMNVHDQGKS 381 (410)
Q Consensus 304 ~WW~Yv~~F~~~C~~~~~~-y~~~Cs~~v~k~lgid~~~v~~C~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (410)
+.|.|....-..-...... ...+=-.++.+.+|+|.+++.+|+.+.. .+.+.++....+.+ .|
T Consensus 107 ~~~~~~~alf~a~~~~g~~i~~~~~L~~~a~~~Gld~~~~~~~~~s~~~~~~v~~~~~~a~~~---------------Gv 171 (202)
T 3fz5_A 107 AATAFAQRVFDLYFSDRLDTASPEAVSRLGPEVGLEPEALLAGIADPALKETVRKIGEDAVAR---------------GI 171 (202)
T ss_dssp HHHHHHHHHHHHHTTTCCCTTCHHHHHTTHHHHTCCHHHHHHHTTCHHHHHHHHHHHHHHHHT---------------TC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhcCHHHHHHHHHHHHHHHHC---------------CC
Confidence 4667766654433322212 2245556677788999999999997543 22222222111111 24
Q ss_pred EEEEEEEEcCC
Q 015274 382 SIFVTISIDTD 392 (410)
Q Consensus 382 ~~~~t~~~~~~ 392 (410)
+=.||++|||+
T Consensus 172 ~GvPtfvv~g~ 182 (202)
T 3fz5_A 172 FGSPFFLVDDE 182 (202)
T ss_dssp CSSSEEEETTE
T ss_pred CcCCEEEECCE
Confidence 44699999987
No 29
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=31.13 E-value=21 Score=32.70 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=42.4
Q ss_pred chhhhHHHhcccCCCCchhc-H-HHHHHHHHHHcCCCHHHHHhhhcc-cc-CCccccchhhhhhcccccccccccccCCC
Q 015274 304 VWWDYVTDFQIRCPMKDKKY-N-KECAAAVIKSLGLDAKKIENLTWI-LR-SEPLWHNICLWTVNLKFQITSTMNVHDQG 379 (410)
Q Consensus 304 ~WW~Yv~~F~~~C~~~~~~y-~-~~Cs~~v~k~lgid~~~v~~C~~~-s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (410)
+.|.|....-..-....... . .+=-.++.+.+|+|.+++++|+.+ .- .+.+.++....+..
T Consensus 115 ~~~~~~~alf~a~~~~g~~i~d~~~~L~~~a~~~Gld~~~~~~~l~s~~~~~~~v~~~~~~a~~~--------------- 179 (239)
T 3gl5_A 115 RHEALLDAFYRGNFADERSVFNDDERLVELAVGAGLDAEEVRAVLADPAAYADEVRADEREAAQL--------------- 179 (239)
T ss_dssp CHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHTTCCHHHHHHHHHCTTTTHHHHHHHHHHHHHT---------------
T ss_pred cHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHcCcHhHHHHHHHHHHHHHHC---------------
Confidence 46677666444332211111 2 345566778899999999999986 32 23333333222222
Q ss_pred ceEEEEEEEEcCCC
Q 015274 380 KSSIFVTISIDTDW 393 (410)
Q Consensus 380 ~~~~~~t~~~~~~~ 393 (410)
.|+=.||++|||++
T Consensus 180 Gv~GvPtfvv~g~~ 193 (239)
T 3gl5_A 180 GATGVPFFVLDRAY 193 (239)
T ss_dssp TCCSSSEEEETTTE
T ss_pred CCCeeCeEEECCcE
Confidence 14446888888873
No 30
>4f87_A Plycb; lysin, bacteriophage, antimicrobial protein, viral protein; 1.40A {Streptococcus phage C1} PDB: 4f88_A
Probab=29.46 E-value=28 Score=25.58 Aligned_cols=21 Identities=43% Similarity=0.442 Sum_probs=19.0
Q ss_pred cceeEEEecHHHHHHHHHHHh
Q 015274 152 ITIPSALIDKSFGETLKKALS 172 (410)
Q Consensus 152 i~IPsvlIsk~dG~~L~~~L~ 172 (410)
--||++-|+++|-++++++++
T Consensus 51 qiipsinisksdveairkamk 71 (72)
T 4f87_A 51 QIIPSINISKSDVEAIRKAMK 71 (72)
T ss_dssp TTSCEEECCGGGHHHHHHHHC
T ss_pred HhCccccccHhHHHHHHHHhc
Confidence 368999999999999999875
Done!