Query 015275
Match_columns 410
No_of_seqs 130 out of 427
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:45:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00552 ADEAMc tRNA-specifi 100.0 1.2E-97 3E-102 750.1 33.0 358 5-399 1-374 (374)
2 KOG2777 tRNA-specific adenosin 100.0 4.8E-90 1E-94 706.7 26.2 356 5-400 173-541 (542)
3 PF02137 A_deamin: Adenosine-d 100.0 6.7E-85 1.4E-89 655.1 15.5 328 51-394 1-343 (343)
4 COG0590 CumB Cytosine/adenosin 83.2 6.4 0.00014 35.3 8.0 34 46-88 38-71 (152)
5 PRK10860 tRNA-specific adenosi 50.2 15 0.00033 33.6 3.0 15 131-145 83-97 (172)
6 cd01285 nucleoside_deaminase N 49.5 12 0.00026 31.2 2.1 16 131-146 68-83 (109)
7 TIGR02571 ComEB ComE operon pr 47.6 64 0.0014 28.9 6.5 13 131-143 88-100 (151)
8 PF15134 DUF4570: Domain of un 44.1 19 0.00041 30.6 2.4 23 70-95 10-32 (109)
9 cd01283 cytidine_deaminase Cyt 28.7 42 0.00091 27.9 2.1 18 130-147 65-87 (112)
10 PF14737 DUF4470: Domain of un 20.5 73 0.0016 26.1 2.0 45 45-89 23-76 (100)
No 1
>smart00552 ADEAMc tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase).
Probab=100.00 E-value=1.2e-97 Score=750.10 Aligned_cols=358 Identities=41% Similarity=0.654 Sum_probs=290.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeCC-CCeEEEEEecCCCcccCCccCCCCCcccchHHHHHHHHH
Q 015275 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSPS-KDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (410)
Q Consensus 5 ~lad~Ia~~v~~~y~~L~~~gkP~~~ewtvlA~iV~~~~~-~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLARR~ 83 (410)
.|||+||++|+++|++||++|||..+||||||||||+.+. ++++||||||||||+|+++++.+|++|||||||||||||
T Consensus 1 ~~~d~Ia~~v~~~y~~L~k~~kp~~~e~tvLA~iV~~~~~~~~~~vvslgTGtKc~~~~~~~~~G~~lhD~HAEVlArR~ 80 (374)
T smart00552 1 DTGDEISQLVLEKFGSLPKIGKPGLREWTILAGVVMTNGMDNEKQVVSLGTGTKCISGEKLSPNGLVLNDCHAEILARRG 80 (374)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCCCCCceeEEEEEEEecCCCceEEEEEecCccccchhhhccCCCEEEeCCHHHHHHHH
Confidence 4799999999999999999999999999999999999873 379999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCccccccCCCCCeeeeeCCC-CceEeeCCcEEEEEeccCCCCccccccccCCCCCCCCC----
Q 015275 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPT-GKYRFREGWQLHLYISQLPCGDASLSSCHSAPRNFFSR---- 158 (410)
Q Consensus 84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~Lk~~v~lhLYiS~~PCGDAsi~~~~~~~~~~~~~---- 158 (410)
|+||||+||+.+.++ . ...||+..++ ++|+||+||+||||||++|||||||+.+.....+....
T Consensus 81 f~r~l~~el~~~~~~----------~-~~sif~~~~~~~~~~Lk~~v~lhlYiS~~PCGdAs~~~~~~~~~~~~~~~~~~ 149 (374)
T smart00552 81 FLRFLYSELQLFNSS----------S-EDSIFEKNKEGGKYKLKSNVLFHLYISTLPCGDASIFSPLEPLKNDDSKHPVR 149 (374)
T ss_pred HHHHHHHHHHHHhcc----------C-CCceEEECCCCCceEeCCCcEEEEEeccCCccccccccccccccccccccccc
Confidence 999999999987542 1 2357876554 49999999999999999999999999876433321000
Q ss_pred ----CCCCCCccccCCCccccccccccccceeecCCCCC--CcceeechhhHHHHHHHhhhhhhhhhhccccceeceEEe
Q 015275 159 ----EGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGRG--DTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (410)
Q Consensus 159 ----~~~~~~~~~~~~g~~~~~~~~~~~~g~vRtKPGRg--d~t~SmSCSDKLarWnvlGlQGaLLS~~iePIYlssivv 232 (410)
.+.........+|+. +++..|+|||||||| ++|+||||||||||||||||||||||||||||||++|||
T Consensus 150 ~~~~~~~~~~~~~~~~g~~-----~~~~~~~vrtkpgr~~~~~t~smSCSDKlarwnvlGlQGaLls~~i~PiYlssivv 224 (374)
T smart00552 150 KNIKRSKLRTKIEIGEGTV-----PVRSSDIVQTWDGIGDGERLLSMSCSDKIARWNVLGVQGALLSHFIEPIYLSSIVL 224 (374)
T ss_pred cccccccccccccccCCcc-----cccccCccccCCCCCCCCcccccchhHHHHHHHHhhcchHHHHHHhhhhhheeEEe
Confidence 011111112233433 356789999999998 579999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHhhhhhcccccccccCCCCcccccceEeeccCCCcccccCccccCCCCCcccEEeeCCCc-ceeE
Q 015275 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSGL-HEVI 311 (410)
Q Consensus 233 g~~~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~~-~Evi 311 (410)
|.... ..++|+|||++|+.++ ..+|.+|.+++|++... +..+|+. ...+ +...|+||+.++. .|++
T Consensus 225 g~~~~------~~~~l~Ra~~~R~~~~-~~l~~~~~~~~p~~~~~--~~~~~~~---~~~~-s~~~Sl~W~~~~~~~ev~ 291 (374)
T smart00552 225 GKSLY------SAEHLERALYGRLDPL-DGLPTPFRVNRPLISLV--SVADFQR---QTAK-SPNFSVNWSQGDESLEIL 291 (374)
T ss_pred cCccC------CHHHHHHHHHhhhccc-ccCCCccccccceeecc--Ccccccc---cCCC-CCCCeEEEEeCCCcEEEE
Confidence 96332 2479999999999877 57889999999998653 2335521 1111 2234899997655 8999
Q ss_pred eCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhcccCCcccHHHHHhchHHHHHHHHHhhc---CCCCCCC
Q 015275 312 LGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFKG---GPPFNNW 388 (410)
Q Consensus 312 ~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~~~~~~~tY~e~K~~a~~Yq~~k~~l~~---~~~~g~W 388 (410)
+|.+|++++ .++++|+|||++||++|.+|......... ...+|.|+|.++.+||++|+.|+. +.+||+|
T Consensus 292 ng~~G~~~~-------~~~~~S~lcK~~l~~~f~~l~~~~~~~~~-~~~sY~e~K~~a~~Yq~aK~~l~~~l~~~~~g~W 363 (374)
T smart00552 292 NGLTGKTQK-------SLGSPSRLCKKALFRLFQKLCSKLKRDDL-LHISYAEAKEAASEYQEAKQLLFEALNKAGLGSW 363 (374)
T ss_pred ECcCCeECC-------CCCCccHHHHHHHHHHHHHHHHhhccccc-CcCCHHHHHHhHHHHHHHHHHHHHHHhHhhCCCc
Confidence 999999883 25678999999999999999876644333 238999999999999999965542 3579999
Q ss_pred CcCCCCCccee
Q 015275 389 PLKPLGYEVFF 399 (410)
Q Consensus 389 ~~kp~~~~~F~ 399 (410)
++||+++++|+
T Consensus 364 ~~KP~e~~~F~ 374 (374)
T smart00552 364 IKKPPEQDQFK 374 (374)
T ss_pred ccCCCchhccC
Confidence 99999999995
No 2
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=100.00 E-value=4.8e-90 Score=706.68 Aligned_cols=356 Identities=39% Similarity=0.613 Sum_probs=295.4
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEee-CCCCeEEEEEecCCCcccCCccCCCCCcccchHHHHHHHHH
Q 015275 5 CWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISS-PSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRA 83 (410)
Q Consensus 5 ~lad~Ia~~v~~~y~~L~~~gkP~~~ewtvlA~iV~~~-~~~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLARR~ 83 (410)
.++|+||++|+++|++|+++|+|..++||||||||+.. ...+.+||||||||||++++.|+.+|.+|||||||||||||
T Consensus 173 ~~~~~Ia~lv~~kF~~L~k~~kp~~~~~tvLAgvv~~~~~~~~~~VVslgTGtKcv~g~~ls~~G~iLnDcHAEIlARR~ 252 (542)
T KOG2777|consen 173 TLGDEIAELVLEKFDELTKNGKPIPREWTVLAGVVMTKRDGEDKKVVSLGTGTKCVSGDKLSPNGLILNDCHAEILARRG 252 (542)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhhhhcccccccceEEEeeccCcccCcceeCCCCCeeecccHHHHHHHH
Confidence 58999999999999999999999999999999999987 35578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCccccccCCCCCeeeeeCCC-CceEeeCCcEEEEEeccCCCCccccccccCCCCC-----CCC
Q 015275 84 LLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPT-GKYRFREGWQLHLYISQLPCGDASLSSCHSAPRN-----FFS 157 (410)
Q Consensus 84 f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~Lk~~v~lhLYiS~~PCGDAsi~~~~~~~~~-----~~~ 157 (410)
|+||||+||+.+.+. . .+.||+..++ ++|+||+||.||||||++|||||+|+.+.....+ ...
T Consensus 253 llRfLy~eL~l~~~~----------~-~~Sif~~~~~~~~~~LK~nv~fhLYiS~~PCGdA~i~~~~~~~~~~~~~~~~~ 321 (542)
T KOG2777|consen 253 LLRFLYSELQLYNSE----------K-KDSIFEKSKEGGKFTLKENVLFHLYISTSPCGDARIFLPSEPATKKLKHVNST 321 (542)
T ss_pred HHHHHHHHHHHhhcc----------C-CCceeeecCCCCceecCCCcEEEEEecCCCCCchhhhCccccccccCCCCCch
Confidence 999999999998643 1 3357876554 4699999999999999999999999876543222 112
Q ss_pred CCCCCCCccccCCCccccccccccccceeecCCCC--CCcceeechhhHHHHHHHhhhhhhhhhhccccceeceEEeCCC
Q 015275 158 REGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPGR--GDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRS 235 (410)
Q Consensus 158 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~vRtKPGR--gd~t~SmSCSDKLarWnvlGlQGaLLS~~iePIYlssivvg~~ 235 (410)
..+..+..++.++|+.. ++..+.||||||| |++++||||||||+|||||||||||||||++||||+|||||..
T Consensus 322 ~~~~~~~~~~~g~g~~~-----~~~~~~V~T~~Gr~~ger~~smSCSDKLaRWNVLGvQGALLsh~lePIYlssIvlg~~ 396 (542)
T KOG2777|consen 322 RRGQLRTKIESGEGTIP-----VGSPDAVQTKPGRLDGERLLSMSCSDKLARWNVLGVQGALLSHFLEPIYLSSIVLGKS 396 (542)
T ss_pred hhhccchhhhccccccc-----cCCCCcccccCCcccCceeeEechHHHHHHHHHHhhHHHHHHHhhccceeeeeEeccc
Confidence 23444444555666543 6678999999999 8999999999999999999999999999999999999999975
Q ss_pred CCCCCCcchHHHHhhhhhcccccccccCCCCcccccceEeeccCCCcccccCccccCCCCCcccEEeeCCC-cceeEeCC
Q 015275 236 PNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEVILGT 314 (410)
Q Consensus 236 ~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~-~~Evi~~~ 314 (410)
.++ .++|.|||++|+......+|.+|.+|.|+++.. ++.+ + ++..++++|+||+.++ ..||++..
T Consensus 397 ~~~------~~~L~rAi~~R~~~~~~~lp~~~~~n~p~~~~v--~~~~-r-----~~~~~~~~slnW~~~~~~~ev~d~~ 462 (542)
T KOG2777|consen 397 LHS------PEHLSRAIHGRLSNFLGNLPPPYILNPPLLSRV--SDAE-R-----QPGKMTPFSLNWSLGDYDLEVNDVT 462 (542)
T ss_pred cCC------HHHHHHHHhcccccccCCCCCceeecCcccccC--CHhH-h-----ccccCCceeeeeecCCcceEecccc
Confidence 443 369999999999883334889999999988764 3223 2 2333445899999876 78898888
Q ss_pred CCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhcccCCcccHHHHHhchHHHHHHHHHhh---cCCCCCCCCcC
Q 015275 315 TGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCLAADISYRELKDGAQAYNIASKVFK---GGPPFNNWPLK 391 (410)
Q Consensus 315 ~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~~~~~~~tY~e~K~~a~~Yq~~k~~l~---~~~~~g~W~~k 391 (410)
||+.-+ +.+|||||++||..|..+......... ...+|.++|..+++||.+|++|. ++.+||+|++|
T Consensus 463 ~G~~~~---------~~~srlcK~~~~~~~~~l~~~~~~~~~-~~~~y~~ak~~~k~yq~ak~~l~~~Lk~~glG~Wi~K 532 (542)
T KOG2777|consen 463 TGRTSL---------GSASRLCKASLFEAFRKLHGLLPKLLL-LPLSYGEAKAEAKEYQSAKKQLKKALKQAGLGNWIRK 532 (542)
T ss_pred cCcccC---------CCccHHHHHHHHHHHHHHHHhhccccc-cchhHHHHHHHhHHHHHHHHHHHHHHHHcccCcCccC
Confidence 887432 347999999999999999987754332 46689999999999999998875 34699999999
Q ss_pred CCCCcceec
Q 015275 392 PLGYEVFFQ 400 (410)
Q Consensus 392 p~~~~~F~~ 400 (410)
|+|+++|.+
T Consensus 533 P~e~~~F~l 541 (542)
T KOG2777|consen 533 PPELDQFTL 541 (542)
T ss_pred Chhhhcccc
Confidence 999999986
No 3
>PF02137 A_deamin: Adenosine-deaminase (editase) domain; InterPro: IPR002466 Editase (3.5 from EC) are enzymes that alter mRNA by catalyzing the site-selective deamination of adenosine residue into inosine residue. The editase domain contains the active site and binds three Zn atoms []. Several editases share a common global arrangement of domains, from N to C terminus: two 'double-stranded RNA-specific adenosine deaminase' (DRADA) repeat domains (IPR000607 from INTERPRO), followed by three 'double-stranded RNA binding' (DsRBD) domains (IPR001159 from INTERPRO), followed by the editase domain. Other editases have a simplified domains structure with no DRADA_REP and possibly fewer DSRBD domains. Editase that deaminate cytidine are not detected by this signature.; GO: 0003723 RNA binding, 0004000 adenosine deaminase activity, 0006396 RNA processing; PDB: 1ZY7_B.
Probab=100.00 E-value=6.7e-85 Score=655.11 Aligned_cols=328 Identities=39% Similarity=0.624 Sum_probs=183.5
Q ss_pred EEecCCCcccCCccCCCCCcccchHHHHHHHHHHHHHHHHHHHhhhccCCCccccccCCCCCeeeeeC--CCCceEeeCC
Q 015275 51 ALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELG--PTGKYRFREG 128 (410)
Q Consensus 51 slgTG~Kc~~~~~l~~~G~~lhD~HAEVLARR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~Lk~~ 128 (410)
||||||||+|.++++.+|++||||||||||||||+||||+||+.+.+... .+ ....||+.. .+++|+||+|
T Consensus 1 SLgTGtKcl~~~~~~~~G~~lhD~HAEVLARR~f~r~L~~el~~~~~~~~------~~-~~~sif~~~~~~~~~~~Lk~~ 73 (343)
T PF02137_consen 1 SLGTGTKCLPASKLSSDGRVLHDCHAEVLARRAFLRFLYEELELLLSGGS------GD-KESSIFERNPDGSGKFRLKPG 73 (343)
T ss_dssp EEEE---B--GGG--TTS-S-SB--HHHHHHHHHHHHHHHHHHHHHH-HH-------H-HHHSSEEE-TTSS--EEE-TT
T ss_pred CccCCCcccCchhcccCCCEEeeCcHHHHHHHHHHHHHHHHHHHHhcCCC------cc-ccCceEeecCCCCceeEeCCC
Confidence 79999999999999999999999999999999999999999999864310 00 123467654 5679999999
Q ss_pred cEEEEEeccCCCCccccccccCCCCCC--CCC---CCCCCCccccCCCcc-------ccccccccccceeecCCCCCCcc
Q 015275 129 WQLHLYISQLPCGDASLSSCHSAPRNF--FSR---EGNSLSSVDELNGFK-------DGIYDSLQHIGRVQRKPGRGDTT 196 (410)
Q Consensus 129 v~lhLYiS~~PCGDAsi~~~~~~~~~~--~~~---~~~~~~~~~~~~g~~-------~~~~~~~~~~g~vRtKPGRgd~t 196 (410)
|+||||||++|||||||+.+...+.+. ... ........ ...+.. ......++..|++||||||||++
T Consensus 74 v~lhlY~S~~PCGdAsi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~RtKPgrgd~~ 152 (343)
T PF02137_consen 74 VKLHLYISQAPCGDASIFPLSSSPWESDPPPESDAQSPLRTKI-TGAKTVPGEPSDPLRGRANYQQLGIVRTKPGRGDRT 152 (343)
T ss_dssp EEEEEEESS--TTHHHHS-TT--------------TT--EEEE-TSSSEEE--SS----------HHHHH-----TT---
T ss_pred eEEEEEeccCccCcccccccccccccccccccccccccccccc-CCCcccCCCccccccccccccCCceeeeeccccCCC
Confidence 999999999999999999876521110 000 00000000 011110 11124578899999999999999
Q ss_pred eeechhhHHHHHHHhhhhhhhhhhccccceeceEEeCCCCCCCCCcchHHHHhhhhhcccccccccCCCCcccccceEee
Q 015275 197 LSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITVGRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLA 276 (410)
Q Consensus 197 ~SmSCSDKLarWnvlGlQGaLLS~~iePIYlssivvg~~~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~ 276 (410)
.|||||||||+||||||||||||+|||||||++||||..+. + .+++|+|||++|+......++.||.++.|++..
T Consensus 153 ~smSCSDKLarW~vlGlQGaLLS~llePiylssivvg~~~~----~-~~~~l~RA~~~R~~~~~~~l~~~~~~~~p~~~~ 227 (343)
T PF02137_consen 153 PSMSCSDKLARWNVLGLQGALLSHLLEPIYLSSIVVGDCPK----F-SQEALRRAFCGRLKSLSSRLPPPYRVNPPLIFF 227 (343)
T ss_dssp EEE-HHHHHHHHHHH-SSHHHHHTTB----EEEEEES--SS-------HHHHHHHHTGGG-TT-----TT------EEE-
T ss_pred cceecccHHHHHHHhccccccHHHhcccceeeEEEEecCCC----C-CHHHHHhhhhcccccccccCCCCceecCcceee
Confidence 99999999999999999999999999999999999997642 1 246999999999955556788999999998874
Q ss_pred ccCCCcccccCccccCCCCCcccEEeeCCCcceeEeCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhccc
Q 015275 277 ASVPPEEFQHSETASSTLTCGYSICWNKSGLHEVILGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIRCL 356 (410)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~si~W~~~~~~Evi~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~~~ 356 (410)
.... .............++++||+|+..+..|+++ +|+++|..+|+...++++|+|||++||+.|.+|...+....+
T Consensus 228 ~~~~-~~~~~~~~~~~~~~s~~Si~W~~~~~~~i~~--~g~k~G~~~k~~~~~~~~S~lck~~l~~~f~~l~~~~~~~~~ 304 (343)
T PF02137_consen 228 SSSR-FSDSSASSSEKAKPSNLSINWCASGEEEIEV--NGVKQGRSKKKSPSPKAASRLCKAALFELFLQLLKALNRSDL 304 (343)
T ss_dssp ------E-SS------S---SEEEEEET-T-SS-EE--EETTTTE-----ETTS---TTSHHHHHHHHHHHHCCS-SS--
T ss_pred cccc-cccccccccCCCCCCCceEEEEecCCcEEEE--eCCCCCcccccCCCCCccCcccHHHHHHHHHHHHHhhccccC
Confidence 2210 0122333445667889999999855567776 899999988888899999999999999999999876655556
Q ss_pred CCcccHHHHHhchHHHHHHHHHhhcC-CCCCCCCcCCCC
Q 015275 357 AADISYRELKDGAQAYNIASKVFKGG-PPFNNWPLKPLG 394 (410)
Q Consensus 357 ~~~~tY~e~K~~a~~Yq~~k~~l~~~-~~~g~W~~kp~~ 394 (410)
....||+++|..+.+||++|+.|+.. .+|++|++||+|
T Consensus 305 ~~~~tY~~~K~~a~~Y~~ak~~l~~~~~~~~~W~~k~~e 343 (343)
T PF02137_consen 305 KSSKTYYEAKRAASDYQEAKQQLKSAQQGLGGWIRKPPE 343 (343)
T ss_dssp SS--SHHHHHHT-HHHHHHHHHHHHHHTTS-------GG
T ss_pred CCcccHHHHHHCHHHHHHHHHHHHhhhccCCCCCCCCCC
Confidence 66679999999999999999999875 789999999975
No 4
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=83.21 E-value=6.4 Score=35.28 Aligned_cols=34 Identities=32% Similarity=0.344 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCcccCCccCCCCCcccchHHHHHHHHHHHHHH
Q 015275 46 DLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFF 88 (410)
Q Consensus 46 ~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLARR~f~r~L 88 (410)
+-+||+-|-++..-..+-.. ||||+|.|.+-+-|
T Consensus 38 ~~~ii~~~~N~~~~~~dpta---------HAEi~air~a~~~~ 71 (152)
T COG0590 38 DGEIIARGHNRREEDNDPTA---------HAEILAIRAAAETL 71 (152)
T ss_pred CCCEEEEecCccccCCCccc---------cHHHHHHHHHHHhh
Confidence 44788877777655543211 99999999885544
No 5
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=50.21 E-value=15 Score=33.61 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=11.6
Q ss_pred EEEEeccCCCCcccc
Q 015275 131 LHLYISQLPCGDASL 145 (410)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (410)
.-||+|-.||--++.
T Consensus 83 ~tlY~TlEPC~MC~~ 97 (172)
T PRK10860 83 ATLYVTLEPCVMCAG 97 (172)
T ss_pred cEEEeeCCCcHHHHH
Confidence 579999999965443
No 6
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=49.52 E-value=12 Score=31.23 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=13.3
Q ss_pred EEEEeccCCCCccccc
Q 015275 131 LHLYISQLPCGDASLS 146 (410)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (410)
..||+|..||.-+++-
T Consensus 68 ~~ly~t~EPC~mC~~a 83 (109)
T cd01285 68 CTLYTTLEPCPMCAGA 83 (109)
T ss_pred eEEEEeCCChHHHHHH
Confidence 7899999999876664
No 7
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=47.58 E-value=64 Score=28.86 Aligned_cols=13 Identities=23% Similarity=0.864 Sum_probs=10.7
Q ss_pred EEEEeccCCCCcc
Q 015275 131 LHLYISQLPCGDA 143 (410)
Q Consensus 131 lhLYiS~~PCGDA 143 (410)
..||+|..||--+
T Consensus 88 ~tlYvT~ePC~~C 100 (151)
T TIGR02571 88 AEIYVTHFPCLQC 100 (151)
T ss_pred cEEEEeCCCcHHH
Confidence 6799999999643
No 8
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=44.13 E-value=19 Score=30.58 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=18.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhh
Q 015275 70 IVNDSHAEIVARRALLRFFYTEVLNK 95 (410)
Q Consensus 70 ~lhD~HAEVLARR~f~r~Ly~el~~~ 95 (410)
-|++-|.|||++|.+ |+++++.-
T Consensus 10 ~Ls~kheEIlsqR~~---LLq~mE~~ 32 (109)
T PF15134_consen 10 QLSKKHEEILSQREM---LLQQMENK 32 (109)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHH
Confidence 378899999999987 66777654
No 9
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=28.70 E-value=42 Score=27.92 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.3
Q ss_pred EEEEEec-----cCCCCcccccc
Q 015275 130 QLHLYIS-----QLPCGDASLSS 147 (410)
Q Consensus 130 ~lhLYiS-----~~PCGDAsi~~ 147 (410)
..-+|+| -+|||.++-..
T Consensus 65 ~~~i~vs~~~~~~sPC~~C~~~l 87 (112)
T cd01283 65 LVTWAVSDEGGVWSPCGACRQVL 87 (112)
T ss_pred EEEEEEECCCCccCCCHHHHHHH
Confidence 4678899 89999988653
No 10
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=20.46 E-value=73 Score=26.09 Aligned_cols=45 Identities=33% Similarity=0.455 Sum_probs=28.6
Q ss_pred CCeEEEEEecCC-----CcccCCccCCCC----CcccchHHHHHHHHHHHHHHH
Q 015275 45 KDLEVVALGTGT-----KCIGRSLLSPHG----DIVNDSHAEIVARRALLRFFY 89 (410)
Q Consensus 45 ~~~~vvslgTG~-----Kc~~~~~l~~~G----~~lhD~HAEVLARR~f~r~Ly 89 (410)
+++.++-+|.|. +.+........+ -.|+|.++||+||--++-.++
T Consensus 23 ~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlARnlLlL~ll 76 (100)
T PF14737_consen 23 EDLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLARNLLLLQLL 76 (100)
T ss_pred CCceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHHHHHHHHHHH
Confidence 356777777774 122111111222 489999999999998877764
Done!