Query 015275
Match_columns 410
No_of_seqs 130 out of 427
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 09:44:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zy7_A RNA-specific adenosine 100.0 1.4E-94 4.8E-99 732.7 26.9 361 4-401 23-402 (403)
2 2b3j_A TRNA adenosine deaminas 59.6 3.8 0.00013 35.6 1.9 16 131-146 77-92 (159)
3 1wwr_A TRNA adenosine deaminas 58.5 4.3 0.00015 35.8 2.1 16 131-146 93-108 (171)
4 2a8n_A Cytidine and deoxycytid 58.1 3.3 0.00011 35.3 1.3 16 131-146 74-89 (144)
5 1z3a_A TRNA-specific adenosine 55.7 4.2 0.00014 35.7 1.6 15 131-145 79-93 (168)
6 2nx8_A TRNA-specific adenosine 50.7 9.8 0.00034 33.7 3.2 15 131-145 86-100 (179)
7 1wkq_A Guanine deaminase; doma 50.0 10 0.00035 33.1 3.1 15 131-145 82-96 (164)
8 2g84_A Cytidine and deoxycytid 47.1 11 0.00037 33.9 2.9 15 131-145 105-119 (197)
9 3v4k_A DNA DC->DU-editing enzy 34.6 7.7 0.00026 35.2 -0.2 18 129-146 100-117 (203)
10 3dh1_A TRNA-specific adenosine 33.0 15 0.00052 32.8 1.5 15 74-88 74-88 (189)
11 2nyt_A Probable C->U-editing e 23.6 36 0.0012 30.4 2.2 15 130-144 84-98 (190)
No 1
>1zy7_A RNA-specific adenosine deaminase B1, isoform drada2A; alpha/beta deaminase motif, zinc coordination, ionsitol hexakisphosphate, hydrolase; HET: IHP; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-94 Score=732.72 Aligned_cols=361 Identities=33% Similarity=0.529 Sum_probs=289.2
Q ss_pred cchHHHHHHHHHHHHhcCCCCCCCCCCCcceEEEEEEeeC--CCCeEEEEEecCCCcccCCccCCCCCcccchHHHHHHH
Q 015275 4 ECWGDEVSKKVLWQYKSLPKKGKPQGREVTVLAAFLISSP--SKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVAR 81 (410)
Q Consensus 4 ~~lad~Ia~~v~~~y~~L~~~gkP~~~ewtvlA~iV~~~~--~~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLAR 81 (410)
..|||+||++|+++|++|+++|||...||||||||||+.+ .++++||||||||||++++.++.+|++|||||||||||
T Consensus 23 ~~~ad~Ia~~v~~~f~~L~~~~kp~~~~~tvLA~iV~~~~~~~~~~~vVslgTGtKc~~~~~~~~~G~vlhD~HAEVlAR 102 (403)
T 1zy7_A 23 QVLADAVSRLVLGKFGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALNDCHAEIISR 102 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSGGGCCSCEEEEEEEESSCGGGCEEEEEEECCCBCCGGGCCTTSCSCSBCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEEEEEccCCCCceEEEEEcCCCCccCcccccCCCCeeeeCCHHHHHH
Confidence 4689999999999999999999999889999999999975 34799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCccccccCCCCCeeeeeCCCCceEeeCCcEEEEEeccCCCCccccccccCCCCC-----CC
Q 015275 82 RALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQLPCGDASLSSCHSAPRN-----FF 156 (410)
Q Consensus 82 R~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Lk~~v~lhLYiS~~PCGDAsi~~~~~~~~~-----~~ 156 (410)
|||+||||+||+.+.... ++. ...||++.++|+|+||+||+||||||++|||||||+.+.+...+ .+
T Consensus 103 Raf~r~L~~ql~~~~~~~-------~~~-~~sif~~~~~~~~~Lk~~v~lhlY~S~~PCGdAsi~~p~~~~~~~~~~~~~ 174 (403)
T 1zy7_A 103 RSLLRFLYTQLELYLNNK-------DDQ-KRSIFQKSERGGFRLKENVQFHLYISTSPCGDARIFSPHEPILEEPADRHP 174 (403)
T ss_dssp HHHHHHHHHHHHHHHHCH-------HHH-HHCSEEECTTSSEEECTTEEEEEEESSCCTTHHHHC---------------
T ss_pred HHHHHHHHHHHHHHhccc-------cCC-CCceEEECCCCCeEECCCcEEEEEeccCCCCCcccCCccccccccccccCc
Confidence 999999999998775210 011 23588888888999999999999999999999999876543211 00
Q ss_pred --CCCCCCCCccccCCCccccccccccccceeecCCC--CCCcceeechhhHHHHHHHhhhhhhhhhhccccceeceEEe
Q 015275 157 --SREGNSLSSVDELNGFKDGIYDSLQHIGRVQRKPG--RGDTTLSVSCSDKIARWNAVGVQGALLSYFLQPVYLSSITV 232 (410)
Q Consensus 157 --~~~~~~~~~~~~~~g~~~~~~~~~~~~g~vRtKPG--Rgd~t~SmSCSDKLarWnvlGlQGaLLS~~iePIYlssivv 232 (410)
...+.+...++.++|+.+.. ..+.++|+|| ||++|+||||||||||||||||||||||||+|||||++|||
T Consensus 175 ~~~~~g~lr~k~~~g~g~~p~~-----~~~~~~~~~gvl~g~~t~smSCSDKlarWnvlGlQGaLLs~fi~PiYlssiv~ 249 (403)
T 1zy7_A 175 NRKARGQLRTKIESGEGTIPVR-----SNASIQTWDGVLQGERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIIL 249 (403)
T ss_dssp --CCTTCCEEEETTCSSCEECC-----SSCCCCCHHHHHTTCCCEEECHHHHHHHHHHHCSSHHHHHTTBCCCCEEEEEE
T ss_pred chhhccccceeeccCCCCCCCC-----CcccccccccccccCcceeechHHHHHHHHHhccchHHHhhhcccceeEEEEe
Confidence 01223333334444544321 1244577777 89999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHhhhhhcccccccccCCCCcccccceEeeccCCCcccccCccccCCCCCcccEEeeCCC-cceeE
Q 015275 233 GRSPNTSEDFPLEEHLKRSLYDRILPLSEELSSPFQVNKPIFLAASVPPEEFQHSETASSTLTCGYSICWNKSG-LHEVI 311 (410)
Q Consensus 233 g~~~~~~~~~~~~~~l~Ra~~~R~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~si~W~~~~-~~Evi 311 (410)
|.+++ .++|+|||++|+..+ ..+|.||++++|++...+.. +.+ .+..++++|+||+.++ ..|||
T Consensus 250 g~~~~-------~~~l~RA~~~R~~~~-~~lp~~~~~~~p~~~~~~~~--~~r-----~~~~~~~~Si~W~~~~~~~Evi 314 (403)
T 1zy7_A 250 GSLYH-------GDHLSRAMYQRISNI-EDLPPLYTLNKPLLSGISNA--EAR-----QPGKAPNFSVNWTVGDSAIEVI 314 (403)
T ss_dssp SSCCC-------HHHHHHHHTGGGTTC-CCCCTTCCCCCCEEEECSSC--CCC-----CCSCCCSEEEEEETTCSSCEEE
T ss_pred CCcCC-------HHHHHHHHHHhhhhh-ccCCCcceecccccccCCcc--ccc-----cCCCCCCeeEEEEcCCCceEEE
Confidence 98753 478999999999875 35789999999998764322 222 2234567899999754 58999
Q ss_pred eCCCCcccCcCCCCCCCCCCccHHHHHHHHHHHHHhhhhhhhc----ccCCcccHHHHHhchHHHHHHHHHhhc---CCC
Q 015275 312 LGTTGRKQGTSAKGALSPSTQSSLCKNRLLQVFLSLKHESKIR----CLAADISYRELKDGAQAYNIASKVFKG---GPP 384 (410)
Q Consensus 312 ~~~~G~k~G~~~K~~~~~~~~SrlcK~~l~~~f~~l~~~~~~~----~~~~~~tY~e~K~~a~~Yq~~k~~l~~---~~~ 384 (410)
+|.+|++. ++++|+|||++||++|++|...+... ......||.|+|.++.+||++|+.|+. +.+
T Consensus 315 ~g~tGk~~---------~~~~SrlcK~~l~~~f~~l~~~l~~~~~~~~~~~~~tY~e~K~~a~~Yq~ak~~l~~~~~~~~ 385 (403)
T 1zy7_A 315 NATTGKDE---------LGRASRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAFIKAG 385 (403)
T ss_dssp ETTTTEET---------TSCCCTTSHHHHHHHHHHHHTTSCGGGCSSCCSSCCSHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred ECCCCCCC---------cCCcCHHHHHHHHHHHHHHHHHhccccccccCCCccCHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 99999742 24589999999999999998765332 235678999999999999999998863 368
Q ss_pred CCCCCcCCCCCcceecC
Q 015275 385 FNNWPLKPLGYEVFFQG 401 (410)
Q Consensus 385 ~g~W~~kp~~~~~F~~~ 401 (410)
||+|++||+++|+|++.
T Consensus 386 lg~W~~Kp~e~d~F~l~ 402 (403)
T 1zy7_A 386 LGAWVEKPTEQDQFSLT 402 (403)
T ss_dssp SCCCCCCCGGGGCCCCC
T ss_pred CCCCCcCCcccCceEec
Confidence 99999999999999874
No 2
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=59.57 E-value=3.8 Score=35.62 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.9
Q ss_pred EEEEeccCCCCccccc
Q 015275 131 LHLYISQLPCGDASLS 146 (410)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (410)
..||+|..||+-++.-
T Consensus 77 ~tlyvT~EPC~mC~~a 92 (159)
T 2b3j_A 77 CTLYVTLEPCVMCAGT 92 (159)
T ss_dssp EEEEEEECCCHHHHHH
T ss_pred eEEEECCCCcHHHHHH
Confidence 5789999999876653
No 3
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=58.55 E-value=4.3 Score=35.80 Aligned_cols=16 Identities=31% Similarity=0.548 Sum_probs=13.1
Q ss_pred EEEEeccCCCCccccc
Q 015275 131 LHLYISQLPCGDASLS 146 (410)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (410)
.-||+|..||+-++.-
T Consensus 93 ~tlYvT~EPC~mC~~a 108 (171)
T 1wwr_A 93 CELYVTLEPCIMCSYA 108 (171)
T ss_dssp EEEEESSCCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 5789999999877664
No 4
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=58.08 E-value=3.3 Score=35.28 Aligned_cols=16 Identities=25% Similarity=0.578 Sum_probs=12.8
Q ss_pred EEEEeccCCCCccccc
Q 015275 131 LHLYISQLPCGDASLS 146 (410)
Q Consensus 131 lhLYiS~~PCGDAsi~ 146 (410)
..||+|..||+-++.-
T Consensus 74 ~tly~T~ePC~mC~~a 89 (144)
T 2a8n_A 74 ADLYVTLEPCTMCAAA 89 (144)
T ss_dssp CEEEEEECCBHHHHHH
T ss_pred eEEEECCCChHHHHHH
Confidence 4689999999877654
No 5
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=55.68 E-value=4.2 Score=35.70 Aligned_cols=15 Identities=27% Similarity=0.456 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcccc
Q 015275 131 LHLYISQLPCGDASL 145 (410)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (410)
.-||+|..||+-++.
T Consensus 79 ~tlYvTlEPC~mC~~ 93 (168)
T 1z3a_A 79 ATLYVTLEPCVMCAG 93 (168)
T ss_dssp CEEEEEECCCHHHHH
T ss_pred cEEEEcCCCcHHHHH
Confidence 468999999986665
No 6
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=50.72 E-value=9.8 Score=33.70 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.2
Q ss_pred EEEEeccCCCCcccc
Q 015275 131 LHLYISQLPCGDASL 145 (410)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (410)
.-||+|..||+-++.
T Consensus 86 ~tlYvTlEPC~mCa~ 100 (179)
T 2nx8_A 86 TTLFVTIEPCVMCSG 100 (179)
T ss_dssp EEEEEEECCBHHHHH
T ss_pred eEEEECCCCcHHHHH
Confidence 579999999976654
No 7
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=50.01 E-value=10 Score=33.12 Aligned_cols=15 Identities=33% Similarity=0.290 Sum_probs=12.1
Q ss_pred EEEEeccCCCCcccc
Q 015275 131 LHLYISQLPCGDASL 145 (410)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (410)
.-||+|..||+-++.
T Consensus 82 ~tlYvT~EPC~mCa~ 96 (164)
T 1wkq_A 82 CILYTSCEPCPMCLG 96 (164)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred eEEEEeCCChHHHHH
Confidence 479999999976654
No 8
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=47.06 E-value=11 Score=33.90 Aligned_cols=15 Identities=27% Similarity=0.146 Sum_probs=11.7
Q ss_pred EEEEeccCCCCcccc
Q 015275 131 LHLYISQLPCGDASL 145 (410)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (410)
.-||+|..||--+..
T Consensus 105 ~tlYvTlEPC~mCa~ 119 (197)
T 2g84_A 105 CELVTSAEPCVMCFG 119 (197)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred EEEEEeCCCCHHHHH
Confidence 679999999974443
No 9
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=34.58 E-value=7.7 Score=35.25 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=15.5
Q ss_pred cEEEEEeccCCCCccccc
Q 015275 129 WQLHLYISQLPCGDASLS 146 (410)
Q Consensus 129 v~lhLYiS~~PCGDAsi~ 146 (410)
+++..|+|-+||-+++-.
T Consensus 100 Y~vTwy~SWSPC~~CA~~ 117 (203)
T 3v4k_A 100 YRVTCFTSWSPCFSCAQE 117 (203)
T ss_pred EEEEEEEeCCChHHHHHH
Confidence 679999999999987753
No 10
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=33.02 E-value=15 Score=32.80 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHH
Q 015275 74 SHAEIVARRALLRFF 88 (410)
Q Consensus 74 ~HAEVLARR~f~r~L 88 (410)
.||||+|.|...+.+
T Consensus 74 ~HAEi~AI~~a~~~~ 88 (189)
T 3dh1_A 74 RHAEMVAIDQVLDWC 88 (189)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 599999999887665
No 11
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=23.60 E-value=36 Score=30.37 Aligned_cols=15 Identities=27% Similarity=0.747 Sum_probs=11.4
Q ss_pred EEEEEeccCCCCccc
Q 015275 130 QLHLYISQLPCGDAS 144 (410)
Q Consensus 130 ~lhLYiS~~PCGDAs 144 (410)
..-||+|-.||-.++
T Consensus 84 g~TlYvTlePC~~Ca 98 (190)
T 2nyt_A 84 NVTWYVSSSPCAACA 98 (190)
T ss_pred CeEEEEEcChHHHHH
Confidence 357999999996533
Done!