Query 015275
Match_columns 410
No_of_seqs 130 out of 427
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 09:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015275.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015275hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2g84a1 c.97.1.2 (A:1-189) Put 70.3 3.8 0.00027 34.6 6.3 43 35-88 48-90 (189)
2 d1wwra1 c.97.1.2 (A:1-151) tRN 59.4 14 0.001 29.5 7.6 15 131-145 73-87 (151)
3 d1wkqa_ c.97.1.2 (A:) Guanine 53.3 4 0.00029 33.4 3.1 15 74-88 54-68 (158)
4 d1p6oa_ c.97.1.2 (A:) Cytosine 39.9 19 0.0014 29.0 5.3 15 131-145 80-94 (156)
5 d2hxva2 c.97.1.2 (A:1-147) Rib 34.6 26 0.0019 27.6 5.3 34 35-85 26-59 (147)
6 d2a8na1 c.97.1.2 (A:2-131) Cyt 29.6 14 0.00099 28.8 2.6 15 131-145 73-87 (130)
7 d1bdsa_ g.9.1.1 (A:) BDs-I def 20.2 12 0.00091 22.8 0.4 8 188-195 8-15 (43)
8 d2b3ja1 c.97.1.2 (A:1-151) tRN 20.1 33 0.0024 26.9 3.2 14 131-144 74-87 (151)
9 d1qr0a1 d.150.1.1 (A:1-101) 4' 18.7 36 0.0026 24.8 3.0 52 72-137 39-90 (101)
10 d2cqea1 g.66.1.1 (A:458-513) Z 18.5 41 0.003 22.4 2.8 28 54-81 8-35 (56)
No 1
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]}
Probab=70.30 E-value=3.8 Score=34.64 Aligned_cols=43 Identities=26% Similarity=0.257 Sum_probs=23.0
Q ss_pred EEEEEEeeCCCCeEEEEEecCCCcccCCccCCCCCcccchHHHHHHHHHHHHHH
Q 015275 35 LAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALLRFF 88 (410)
Q Consensus 35 lA~iV~~~~~~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLARR~f~r~L 88 (410)
++|+|+.. ++-+||+-|.-. .. .+|+.. -||||+|.|-.-+.+
T Consensus 48 ~GaviV~~--~~g~Iia~g~N~-~~------~~~dpt--~HAEi~AI~~A~~~~ 90 (189)
T d2g84a1 48 FAAAVFER--DSGLLIAAGTNR-VV------PGRCSA--AHAEILALSLAQAKL 90 (189)
T ss_dssp CEEEEEET--TTCBEEEEEECC-TT------TTTCTT--CCHHHHHHHHHHHHH
T ss_pred EEEEEEEC--CCCEEEEEEcCC-cC------cCCCCc--ccHHHHHHHHHHHHh
Confidence 35555432 345888876433 11 122211 199999987654443
No 2
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]}
Probab=59.37 E-value=14 Score=29.54 Aligned_cols=15 Identities=33% Similarity=0.560 Sum_probs=11.6
Q ss_pred EEEEeccCCCCcccc
Q 015275 131 LHLYISQLPCGDASL 145 (410)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (410)
.-||+|-.||--++.
T Consensus 73 ~tlY~TlEPC~mC~~ 87 (151)
T d1wwra1 73 CELYVTLEPCIMCSY 87 (151)
T ss_dssp EEEEESSCCBHHHHH
T ss_pred cEeeecccCCcHHHH
Confidence 469999999966543
No 3
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]}
Probab=53.32 E-value=4 Score=33.39 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHH
Q 015275 74 SHAEIVARRALLRFF 88 (410)
Q Consensus 74 ~HAEVLARR~f~r~L 88 (410)
.|||++|.|...+-|
T Consensus 54 ~HAE~~ai~~a~~~~ 68 (158)
T d1wkqa_ 54 AHAEVTAIRKACKVL 68 (158)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhc
Confidence 599999998765554
No 4
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.92 E-value=19 Score=28.97 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=11.5
Q ss_pred EEEEeccCCCCcccc
Q 015275 131 LHLYISQLPCGDASL 145 (410)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (410)
.-||+|..||-.++.
T Consensus 80 ~tlyvTlEPC~mC~~ 94 (156)
T d1p6oa_ 80 TTLYTTLSPCDMCTG 94 (156)
T ss_dssp EEEEEEECCCHHHHH
T ss_pred eEEEeeccCCHHHHH
Confidence 468999999965544
No 5
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}
Probab=34.64 E-value=26 Score=27.63 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEEEeeCCCCeEEEEEecCCCcccCCccCCCCCcccchHHHHHHHHHHH
Q 015275 35 LAAFLISSPSKDLEVVALGTGTKCIGRSLLSPHGDIVNDSHAEIVARRALL 85 (410)
Q Consensus 35 lA~iV~~~~~~~~~vvslgTG~Kc~~~~~l~~~G~~lhD~HAEVLARR~f~ 85 (410)
++|+|+.+ -+|||-|.=. ..| +.|||++|.+...
T Consensus 26 VGaViV~~----g~IIa~g~n~---------~~~----~~hae~~ai~~a~ 59 (147)
T d2hxva2 26 VGAVVVKD----GRIIAEGFHP---------YFG----GPHAERMAIESAR 59 (147)
T ss_dssp CEEEEEET----TEEEEEEECC---------STT----SCCHHHHHHHHHH
T ss_pred EEEEEEEC----CeEEEeecee---------ccC----CchHHHHHHHHHH
Confidence 45555432 3788887421 122 4699999998663
No 6
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=29.58 E-value=14 Score=28.81 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=11.4
Q ss_pred EEEEeccCCCCcccc
Q 015275 131 LHLYISQLPCGDASL 145 (410)
Q Consensus 131 lhLYiS~~PCGDAsi 145 (410)
.-||+|..||--++.
T Consensus 73 ~tly~T~EPC~mC~~ 87 (130)
T d2a8na1 73 ADLYVTLEPCTMCAA 87 (130)
T ss_dssp CEEEEEECCBHHHHH
T ss_pred CEEecccccCHHHHH
Confidence 358999999965543
No 7
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=20.21 E-value=12 Score=22.79 Aligned_cols=8 Identities=75% Similarity=1.294 Sum_probs=6.2
Q ss_pred cCCCCCCc
Q 015275 188 RKPGRGDT 195 (410)
Q Consensus 188 tKPGRgd~ 195 (410)
-||||||-
T Consensus 8 gkpgrgdl 15 (43)
T d1bdsa_ 8 GKPGRGDL 15 (43)
T ss_dssp SCCSCCEE
T ss_pred CCCCCCcE
Confidence 48999983
No 8
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]}
Probab=20.07 E-value=33 Score=26.94 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=10.8
Q ss_pred EEEEeccCCCCccc
Q 015275 131 LHLYISQLPCGDAS 144 (410)
Q Consensus 131 lhLYiS~~PCGDAs 144 (410)
.-||+|..||--++
T Consensus 74 ~~ly~t~ePC~mC~ 87 (151)
T d2b3ja1 74 CTLYVTLEPCVMCA 87 (151)
T ss_dssp EEEEEEECCCHHHH
T ss_pred CeEEEeccchhhhh
Confidence 56999999995443
No 9
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=18.65 E-value=36 Score=24.82 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=28.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhccCCCccccccCCCCCeeeeeCCCCceEeeCCcEEEEEecc
Q 015275 72 NDSHAEIVARRALLRFFYTEVLNKQKCSNGIEGLRDDVFNNFLFELGPTGKYRFREGWQLHLYISQ 137 (410)
Q Consensus 72 hD~HAEVLARR~f~r~Ly~el~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Lk~~v~lhLYiS~ 137 (410)
.|.+.= |+-|.|+|+++.+.... ....+.|..++.||=.|...-.+||=||+
T Consensus 39 ~dr~~~-l~~r~llr~~l~~~~~~-------------~p~~i~~~~~~~GKP~l~~~~~i~FNiSH 90 (101)
T d1qr0a1 39 EDAHRT-LLGDVLVRSVISRQYQL-------------DKSDIRFSTQEYGKPCIPDLPDAHFNISH 90 (101)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHTTC-------------CGGGCCCEECTTSCEECTTCTTCEEEEEE
T ss_pred HHHHHH-HHHHHHHHHHHHHHhCC-------------CccceeEEeCCCCCccccCCCCcEEEecc
Confidence 344433 44466667776544322 11335567777776656544446666665
No 10
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.48 E-value=41 Score=22.36 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.1
Q ss_pred cCCCcccCCccCCCCCcccchHHHHHHH
Q 015275 54 TGTKCIGRSLLSPHGDIVNDSHAEIVAR 81 (410)
Q Consensus 54 TG~Kc~~~~~l~~~G~~lhD~HAEVLAR 81 (410)
||+||+.++.=...=.-|.|---|+|++
T Consensus 8 tg~kCy~gd~C~FSH~pLt~~t~~lL~K 35 (56)
T d2cqea1 8 TTGNCINGDDCMFSHDPLTEETRELLDK 35 (56)
T ss_dssp HTSCCSSCTTCSSBCCCCCHHHHHHHHH
T ss_pred cCCcccCCCcccccCCccCHHHHHHHHH
Confidence 8999998875543336888877777654
Done!