Query 015276
Match_columns 410
No_of_seqs 180 out of 316
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_B Splicing factor U2AF 65 99.0 2.1E-11 7.3E-16 79.2 -0.1 21 344-364 4-24 (28)
2 3pgw_S U1-70K; protein-RNA com 95.1 0.011 3.8E-07 60.5 3.7 12 350-361 425-436 (437)
3 1l8d_A DNA double-strand break 93.3 0.38 1.3E-05 39.7 8.7 12 192-203 47-58 (112)
4 3na7_A HP0958; flagellar bioge 90.9 0.96 3.3E-05 42.8 9.4 62 89-150 61-125 (256)
5 3cw1_L U1 small nuclear ribonu 70.9 0.88 3E-05 36.1 0.1 29 193-222 4-32 (77)
6 1lq7_A Alpha3W; three helix bu 69.8 8.6 0.0003 28.5 5.2 34 131-164 27-60 (67)
7 3onj_A T-snare VTI1; helix, HA 68.2 40 0.0014 27.1 9.6 86 82-178 3-89 (97)
8 2fc6_A Nuclear, target of EGR1 66.5 1.3 4.4E-05 32.4 0.1 26 34-68 20-46 (50)
9 1lq7_A Alpha3W; three helix bu 64.6 12 0.00043 27.7 5.1 41 131-174 4-44 (67)
10 4b6x_A AVRRPS4, avirulence pro 64.1 47 0.0016 26.5 8.7 56 122-177 22-77 (90)
11 1x0t_A Ribonuclease P protein 63.8 20 0.00068 30.2 7.1 66 131-208 16-81 (120)
12 1m1j_B Fibrinogen beta chain; 63.1 27 0.00092 36.1 9.3 94 84-178 93-191 (464)
13 2i0m_A Phosphate transport sys 62.3 62 0.0021 28.5 10.6 121 86-216 76-198 (216)
14 3na7_A HP0958; flagellar bioge 61.2 66 0.0022 30.0 11.0 26 126-151 94-119 (256)
15 4afl_A P29ING4, inhibitor of g 60.4 32 0.0011 27.8 7.6 70 92-167 22-95 (104)
16 1yuz_A Nigerythrin; rubrythrin 58.3 21 0.00073 32.5 6.9 12 190-201 169-180 (202)
17 2qyw_A Vesicle transport throu 58.0 74 0.0025 25.8 12.2 82 82-178 17-101 (102)
18 2lw1_A ABC transporter ATP-bin 56.5 53 0.0018 25.9 8.1 52 126-177 19-78 (89)
19 2d9n_A Cleavage and polyadenyl 55.4 6.2 0.00021 30.5 2.3 29 30-67 6-34 (77)
20 1sum_B Phosphate transport sys 54.9 53 0.0018 29.6 9.0 80 129-216 117-198 (235)
21 3d2q_A Muscleblind-like protei 54.4 4.6 0.00016 30.7 1.4 25 32-66 4-30 (70)
22 2jee_A YIIU; FTSZ, septum, coi 54.2 29 0.001 27.6 6.1 14 160-173 53-66 (81)
23 3klr_A Glycine cleavage system 53.0 7.2 0.00025 33.4 2.5 43 346-395 35-77 (125)
24 3pxg_A Negative regulator of g 50.9 63 0.0022 32.5 9.6 48 131-178 396-443 (468)
25 2cqe_A KIAA1064 protein; CCCH 50.3 5.4 0.00019 32.5 1.3 23 33-65 12-35 (98)
26 1lko_A Rubrerythrin all-iron(I 49.9 37 0.0013 30.4 7.0 11 191-201 154-164 (191)
27 2rhk_C Cleavage and polyadenyl 48.4 7.5 0.00026 29.9 1.7 28 30-66 12-39 (72)
28 2dq0_A Seryl-tRNA synthetase; 48.3 23 0.00079 36.3 5.9 49 128-178 44-92 (455)
29 2k3r_A Ribonuclease P protein 46.2 23 0.00079 30.0 4.6 65 132-208 12-76 (123)
30 3qne_A Seryl-tRNA synthetase, 46.2 30 0.001 35.9 6.4 47 130-178 48-94 (485)
31 4ani_A Protein GRPE; chaperone 44.7 62 0.0021 30.0 7.7 88 129-232 59-151 (213)
32 3oja_B Anopheles plasmodium-re 44.1 1.7E+02 0.0057 29.8 11.7 22 157-178 532-553 (597)
33 1yzm_A FYVE-finger-containing 43.4 93 0.0032 22.6 6.8 42 134-175 7-48 (51)
34 3d2n_A Muscleblind-like protei 43.3 9.9 0.00034 30.2 1.8 18 56-73 55-73 (83)
35 1vcs_A Vesicle transport throu 43.3 1.3E+02 0.0044 24.3 10.3 21 158-178 70-90 (102)
36 3pwf_A Rubrerythrin; non heme 42.7 61 0.0021 28.7 7.1 12 190-201 136-147 (170)
37 3ghg_A Fibrinogen alpha chain; 42.7 16 0.00056 38.3 3.7 22 33-61 24-46 (562)
38 1m1j_C Fibrinogen gamma chain; 42.1 56 0.0019 33.2 7.5 24 88-111 38-61 (409)
39 2e5s_A Otthump00000018578; ZF- 41.7 5.2 0.00018 32.7 -0.1 15 33-47 19-33 (98)
40 3v1a_A Computational design, M 40.3 1E+02 0.0034 22.2 6.5 39 134-172 6-44 (48)
41 2yrk_A Zinc finger homeobox pr 39.6 6.2 0.00021 29.3 0.0 31 193-226 14-44 (55)
42 1wle_A Seryl-tRNA synthetase; 39.2 54 0.0019 34.0 7.0 50 129-178 84-139 (501)
43 1zu1_A DSRBP-ZFA, RNA binding 38.8 7.4 0.00025 32.8 0.4 31 191-224 92-122 (127)
44 3d2q_A Muscleblind-like protei 38.1 12 0.00042 28.3 1.5 24 34-67 42-65 (70)
45 2dfs_A Myosin-5A; myosin-V, in 38.0 1E+02 0.0035 35.0 9.5 53 125-178 987-1039(1080)
46 3frt_A Charged multivesicular 37.6 2.4E+02 0.0081 26.0 10.5 66 95-176 10-75 (218)
47 2e5s_A Otthump00000018578; ZF- 37.3 16 0.00056 29.7 2.2 30 35-74 57-87 (98)
48 3mq9_A Bone marrow stromal ant 36.2 1.2E+02 0.0043 30.0 9.1 53 125-178 400-459 (471)
49 1z0k_B FYVE-finger-containing 36.1 1E+02 0.0035 23.7 6.4 42 133-174 24-65 (69)
50 3u8p_A Cytochrome B562 integra 35.6 1.2E+02 0.0039 30.2 8.2 33 143-178 116-148 (347)
51 3hgb_A Glycine cleavage system 35.1 13 0.00046 32.9 1.4 43 346-395 62-104 (155)
52 2rpp_A Muscleblind-like protei 34.9 22 0.00077 28.5 2.6 19 30-48 13-31 (89)
53 1ik9_A DNA repair protein XRCC 34.6 2.7E+02 0.0093 25.5 10.5 50 128-177 145-194 (213)
54 2lf0_A Uncharacterized protein 34.5 95 0.0032 26.4 6.5 48 129-176 10-57 (123)
55 1gp8_A Protein (scaffolding pr 34.2 39 0.0013 23.4 3.3 32 135-166 7-38 (40)
56 1zu1_A DSRBP-ZFA, RNA binding 34.1 7.8 0.00027 32.7 -0.2 28 191-221 31-58 (127)
57 1xwm_A PHOU, phosphate uptake 33.5 2.2E+02 0.0074 24.9 9.4 80 129-216 117-198 (217)
58 3mxu_A Glycine cleavage system 32.8 15 0.00053 32.1 1.4 43 346-395 57-99 (143)
59 1dkg_A Nucleotide exchange fac 32.5 1.1E+02 0.0038 27.8 7.2 41 190-230 84-130 (197)
60 2r6a_C DNAG primase, helicase 32.4 1E+02 0.0035 25.0 6.5 37 134-170 103-139 (143)
61 1t72_A Phosphate transport sys 32.4 1.5E+02 0.0051 26.1 8.1 84 125-214 14-100 (227)
62 3r8n_T 30S ribosomal protein S 32.3 75 0.0026 25.3 5.3 37 133-169 21-57 (85)
63 1lrz_A FEMA, factor essential 31.8 1.3E+02 0.0045 29.7 8.4 21 158-178 277-297 (426)
64 1z0j_B FYVE-finger-containing 31.7 1.6E+02 0.0053 22.1 6.6 44 132-175 12-55 (59)
65 3bas_A Myosin heavy chain, str 31.6 1.9E+02 0.0065 22.8 8.9 64 97-178 16-79 (89)
66 2spc_A Spectrin; cytoskeleton; 31.3 1.7E+02 0.0059 22.6 7.5 51 127-178 48-98 (107)
67 3mjh_B Early endosome antigen 30.8 13 0.00046 24.8 0.6 21 193-216 6-26 (34)
68 2h8b_A Insulin-like 3; insulin 30.7 10 0.00036 23.8 0.0 9 39-47 18-26 (26)
69 3hho_A CO-chaperone protein HS 30.6 1.8E+02 0.0063 25.4 8.2 44 131-174 122-165 (174)
70 1tjl_A DNAK suppressor protein 30.1 2.1E+02 0.0072 24.8 8.4 12 191-202 110-121 (151)
71 2lo3_A SAGA-associated factor 30.0 15 0.00052 25.9 0.7 28 190-217 15-42 (44)
72 3uo3_A J-type CO-chaperone JAC 29.5 1.8E+02 0.0063 25.8 8.1 46 130-175 126-171 (181)
73 1m1j_A Fibrinogen alpha subuni 29.4 1.6E+02 0.0056 30.4 8.4 23 32-61 23-47 (491)
74 3pe0_A Plectin; cytoskeleton, 29.4 3.6E+02 0.012 25.3 11.0 87 90-177 7-102 (283)
75 2i5o_A DNA polymerase ETA; zin 29.1 16 0.00054 25.2 0.7 26 191-216 8-33 (39)
76 1skh_A Major prion protein 2; 29.0 9.1 0.00031 25.0 -0.5 23 40-62 4-26 (30)
77 1njq_A Superman protein; zinc- 28.9 17 0.00058 22.6 0.8 15 191-205 5-19 (39)
78 3hd7_A Vesicle-associated memb 28.6 1.1E+02 0.0037 24.3 5.8 12 136-147 23-34 (91)
79 2yru_A Steroid receptor RNA ac 28.4 1.4E+02 0.0049 24.9 6.7 49 96-162 37-85 (118)
80 3hnw_A Uncharacterized protein 28.3 1E+02 0.0036 26.4 6.0 20 91-110 28-47 (138)
81 3lay_A Zinc resistance-associa 27.7 1.6E+02 0.0056 26.3 7.3 49 130-178 86-136 (175)
82 2lw1_A ABC transporter ATP-bin 27.3 2E+02 0.0067 22.5 7.0 27 86-112 20-46 (89)
83 2odv_A Plectin 1, HD1; plakin 27.2 3.7E+02 0.013 24.8 11.8 54 124-178 167-220 (235)
84 2k5c_A Uncharacterized protein 26.7 14 0.00047 29.8 0.0 14 189-202 5-18 (95)
85 3mhs_E SAGA-associated factor 26.1 14 0.00047 30.4 -0.1 23 190-216 73-95 (96)
86 3tzu_A GCVH, glycine cleavage 26.0 22 0.00076 30.8 1.2 43 346-395 52-94 (137)
87 1ard_A Yeast transcription fac 25.7 24 0.00081 19.7 1.0 21 192-215 2-22 (29)
88 2dq3_A Seryl-tRNA synthetase; 25.6 25 0.00086 35.6 1.7 44 130-175 45-88 (425)
89 1znf_A 31ST zinc finger from X 25.5 34 0.0012 18.8 1.7 25 193-222 2-26 (27)
90 2dfs_A Myosin-5A; myosin-V, in 25.3 1.1E+02 0.0036 34.8 6.9 18 161-178 983-1000(1080)
91 2gd5_A Charged multivesicular 25.3 3.4E+02 0.012 23.7 10.0 47 130-176 29-75 (179)
92 1srk_A Zinc finger protein ZFP 25.1 23 0.00079 21.1 0.9 23 190-215 5-27 (35)
93 1fxk_C Protein (prefoldin); ar 24.9 85 0.0029 26.1 4.7 42 94-148 87-128 (133)
94 3us6_A Histidine-containing ph 24.6 3.3E+02 0.011 23.2 12.3 75 89-166 42-121 (153)
95 3b5n_A Synaptobrevin homolog 1 24.5 1.8E+02 0.0063 21.1 5.9 15 134-148 18-32 (61)
96 2aus_D NOP10, ribosome biogene 24.4 18 0.0006 27.3 0.2 14 190-203 3-16 (60)
97 2jee_A YIIU; FTSZ, septum, coi 24.3 2.6E+02 0.0091 22.1 10.2 40 131-175 8-54 (81)
98 1e52_A Excinuclease ABC subuni 24.2 1.3E+02 0.0045 22.6 5.1 38 133-170 21-58 (63)
99 2vqe_T 30S ribosomal protein S 24.2 1.3E+02 0.0043 25.0 5.4 36 133-168 28-63 (106)
100 1rik_A E6APC1 peptide; E6-bind 24.0 29 0.00098 19.4 1.1 21 192-215 2-22 (29)
101 2m0d_A Zinc finger and BTB dom 23.9 22 0.00075 19.9 0.6 22 191-215 2-23 (30)
102 1zr9_A Zinc finger protein 593 23.8 21 0.00073 30.5 0.7 30 190-222 48-77 (124)
103 1sfc_A VAMP 2, protein (synapt 23.6 1.7E+02 0.0059 23.4 6.1 58 102-170 30-87 (96)
104 1ses_A Seryl-tRNA synthetase; 23.4 1.1E+02 0.0038 30.7 6.1 45 130-178 43-87 (421)
105 3bvo_A CO-chaperone protein HS 23.3 2.9E+02 0.01 24.9 8.4 42 134-175 160-201 (207)
106 1rim_A E6APC2 peptide; E6-bind 23.2 29 0.00099 20.8 1.1 21 192-215 2-22 (33)
107 3lss_A Seryl-tRNA synthetase; 22.8 1.5E+02 0.0052 30.6 6.9 18 161-178 109-127 (484)
108 2yte_A Zinc finger protein 473 22.7 30 0.001 21.5 1.1 16 190-205 8-23 (42)
109 3oja_A Leucine-rich immune mol 22.7 4.7E+02 0.016 25.8 10.6 47 130-178 411-458 (487)
110 1s35_A Beta-I spectrin, spectr 22.5 2.3E+02 0.0079 24.4 7.4 50 128-178 153-202 (214)
111 1p7a_A BF3, BKLF, kruppel-like 22.3 41 0.0014 20.2 1.7 23 190-215 9-31 (37)
112 1yui_A GAGA-factor; complex (D 22.3 27 0.00093 23.5 0.9 24 189-215 21-44 (54)
113 2eoj_A Zinc finger protein 268 21.7 25 0.00084 22.3 0.5 23 190-215 10-32 (44)
114 2ytb_A Zinc finger protein 32; 21.7 30 0.001 21.5 1.0 23 190-215 9-31 (42)
115 2kvf_A Zinc finger and BTB dom 21.5 37 0.0013 18.9 1.3 21 192-215 3-23 (28)
116 2yto_A Zinc finger protein 484 21.3 31 0.001 22.2 1.0 16 190-205 10-25 (46)
117 2el5_A Zinc finger protein 268 21.3 32 0.0011 21.5 1.0 23 190-215 8-30 (42)
118 2lvr_A Zinc finger and BTB dom 26.2 21 0.00071 20.2 0.0 21 192-215 3-23 (30)
119 2epv_A Zinc finger protein 268 20.6 32 0.0011 21.9 1.0 23 190-215 10-32 (44)
120 1x4t_A Hypothetical protein LO 20.5 1.5E+02 0.0053 24.0 5.1 45 87-145 24-68 (92)
121 2ely_A Zinc finger protein 224 20.5 45 0.0016 21.3 1.7 18 190-207 10-27 (46)
122 2eou_A Zinc finger protein 473 20.4 35 0.0012 21.6 1.1 23 190-215 10-32 (44)
123 2eml_A Zinc finger protein 28 20.4 34 0.0012 21.9 1.0 23 190-215 10-32 (46)
124 2epc_A Zinc finger protein 32; 20.4 32 0.0011 21.4 0.9 23 190-215 9-31 (42)
No 1
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=99.04 E-value=2.1e-11 Score=79.25 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=18.1
Q ss_pred ccceeccCCCcccccccccee
Q 015276 344 QYYFVETLPSPFHQILLKEKR 364 (410)
Q Consensus 344 ~y~~~d~~p~g~~~~~~~~~~ 364 (410)
.++||||||+|||||||+||+
T Consensus 4 p~~~WDvpP~GyE~vtp~qyk 24 (28)
T 1jmt_B 4 VRKYWDVPPPGFEHITPMQYK 24 (28)
T ss_dssp --CCBTCCCTTCTTSCHHHHH
T ss_pred cccccCCCCCCccccCHHHHh
Confidence 345999999999999999987
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=95.14 E-value=0.011 Score=60.48 Aligned_cols=12 Identities=0% Similarity=-0.175 Sum_probs=5.3
Q ss_pred cCCCcccccccc
Q 015276 350 TLPSPFHQILLK 361 (410)
Q Consensus 350 ~~p~g~~~~~~~ 361 (410)
-||.||.--+||
T Consensus 425 ~~~~~~~~~~~~ 436 (437)
T 3pgw_S 425 APENGYLMEAAP 436 (437)
T ss_pred CCCccccccCCC
Confidence 344444444443
No 3
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=93.33 E-value=0.38 Score=39.67 Aligned_cols=12 Identities=33% Similarity=0.808 Sum_probs=10.0
Q ss_pred cccccccchhhh
Q 015276 192 MALCEICGSFLV 203 (410)
Q Consensus 192 l~VCeVCGA~Ls 203 (410)
-.+|+|||.-|.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 468999999866
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.90 E-value=0.96 Score=42.77 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC---chhhHHHHHHHHHHHHHHHHHHHHHhh
Q 015276 89 LAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPI---SAEKSEQLSVLEEKIKNLLEQVETLGE 150 (410)
Q Consensus 89 ~~~~L~~lI~d~DrkI~~~k~RLe~~~ee~~~~~~---~~~~~eeI~~LeekI~~Ll~eaEeLGe 150 (410)
-+.-++.-|.++..+|.+.+.+|............ ......++..++++|..++.++|.+-+
T Consensus 61 ~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~ 125 (256)
T 3na7_A 61 QVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE 125 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568899999999999999999653210000000 112334566667777777777766543
No 5
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=70.90 E-value=0.88 Score=36.13 Aligned_cols=29 Identities=28% Similarity=0.721 Sum_probs=24.0
Q ss_pred ccccccchhhhccchhhHhhhhhccccccc
Q 015276 193 ALCEICGSFLVANDAAERTQSHISGKQHIG 222 (410)
Q Consensus 193 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlG 222 (410)
.-|+.|..||. .|+..=...|..|+.|++
T Consensus 4 YyCdYCd~~lt-~Ds~s~Rk~H~~G~kH~~ 32 (77)
T 3cw1_L 4 FYCDYCDTYLT-HDSPSVRKTHCSGRKHKE 32 (77)
T ss_pred cccccCCceec-CCCHHHHHHHHccHHHHH
Confidence 45999999964 677775678999999996
No 6
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=69.79 E-value=8.6 Score=28.52 Aligned_cols=34 Identities=29% Similarity=0.546 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 015276 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKV 164 (410)
Q Consensus 131 I~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kv 164 (410)
|.+|..+-.+|-.+||+||--|+|......+.++
T Consensus 27 ieelkkkweelkkkieelggggevkkveeevkkl 60 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEELGGGGEVKKVEEEVKKL 60 (67)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 4566666667777888888888876655544443
No 7
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=68.16 E-value=40 Score=27.13 Aligned_cols=86 Identities=9% Similarity=0.083 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 015276 82 VPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALM 161 (410)
Q Consensus 82 ~~~YE~e~~~~L~~lI~d~DrkI~~~k~RLe~~~ee~~~~~~~~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm 161 (410)
|.+||.+|-..+..+-. +|.... -+ +.++. .....++...+.+.++-|..|--++..+| |....=..++
T Consensus 3 F~~YE~df~~~~~~i~~----~l~~~~-~~--~ge~R--k~~i~~ie~~ldEA~ell~qMelE~~~~~--~p~~~R~~~~ 71 (97)
T 3onj_A 3 LISYESDFKTTLEQAKA----SLAEAP-SQ--PLSQR--NTTLKHVEQQQDELFDLLDQMDVEVNNSI--GDASERATYK 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHGG-GS--CHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHh-cc--ChHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 56899999766555544 443331 00 00000 01123344455555555566655665554 2444445778
Q ss_pred HHHHHHHHHHHH-HHhhh
Q 015276 162 RKVEILNVEKTT-LTQQS 178 (410)
Q Consensus 162 ~kvE~Lk~Eke~-le~~~ 178 (410)
.++...+.+.+. |+.++
T Consensus 72 ~klr~Yk~dl~~~lk~~l 89 (97)
T 3onj_A 72 AKLREWKKTIQSDIKRPL 89 (97)
T ss_dssp HHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888877 77665
No 8
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=66.48 E-value=1.3 Score=32.37 Aligned_cols=26 Identities=27% Similarity=0.713 Sum_probs=20.1
Q ss_pred CCCcchhhc-CCChhHhhhhcccCCCCCCCCCcHHH
Q 015276 34 KEVCPFYMV-RFCPHDLFVNTRSDLGPCPRIHDQKL 68 (410)
Q Consensus 34 ~~VCk~yLv-G~CPhdLF~NTK~DLG~C~kiHd~~l 68 (410)
-.||.-|-+ |+||+.+ .||.+||-.|
T Consensus 20 ~~iC~~FSayGwCp~G~---------~Cp~SHDiDl 46 (50)
T 2fc6_A 20 TSICDNFSAYGWCPLGP---------QCPQSHDISG 46 (50)
T ss_dssp SCBCSHHHHTCCCTTGG---------GCSSBCCCCC
T ss_pred cchhhhccccccCCCCC---------CCCccccCCC
Confidence 369988876 9998764 5999998653
No 9
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=64.57 E-value=12 Score=27.66 Aligned_cols=41 Identities=39% Similarity=0.570 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 015276 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174 (410)
Q Consensus 131 I~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~l 174 (410)
+..|++++..|-+++..||--|.+++-.+ +-++|+.+.++|
T Consensus 4 vkaleekvkaleekvkalggggrieelkk---kweelkkkieel 44 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKK---KWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHH---HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHH---HHHHHHHHHHHh
Confidence 56788899999999999999999987544 445555554443
No 10
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=64.12 E-value=47 Score=26.50 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=45.3
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 015276 122 PISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177 (410)
Q Consensus 122 ~~~~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~ 177 (410)
...++..++|..-..-|+.|.++.+...++|+-.+.-.-...++..+.....|...
T Consensus 22 G~~~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~ 77 (90)
T 4b6x_A 22 GAGAALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRR 77 (90)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999999988777676666666666555544
No 11
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=63.80 E-value=20 Score=30.21 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccccchhhhccchh
Q 015276 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAA 208 (410)
Q Consensus 131 I~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d 208 (410)
.....+.|+-|.+-|..+ ..++.+-|...+..+..+-.+- ..-.+..-+-.+|.-||++|+-+-|-
T Consensus 16 ~~ia~~Ri~~L~~~A~~~-~~~~p~lSr~Y~~~~~~is~k~-----------~irlp~~~KR~~Ck~C~s~LiPG~t~ 81 (120)
T 1x0t_A 16 KKIAIERIDTLFTLAERV-ARYSPDLAKRYVELALEIQKKA-----------KVKIPRKWKRRYCKRCHTFLIPGVNA 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHH-----------TCCCCTTTTTSBCTTTCCBCCBTTTE
T ss_pred hHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh-----------ccCCCHHHHHHhccCCCCEeECCCce
Confidence 345577899999999888 5677777777776665553211 01234566788999999999987654
No 12
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.10 E-value=27 Score=36.14 Aligned_cols=94 Identities=7% Similarity=0.002 Sum_probs=45.6
Q ss_pred hhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 015276 84 KFEAEL---AQFCEKLVMDLDRRVRRGRERLSQEVEPAP-PPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEA 159 (410)
Q Consensus 84 ~YE~e~---~~~L~~lI~d~DrkI~~~k~RLe~~~ee~~-~~~~~~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~ 159 (410)
.|+..+ ++.|+..|.++..+...+..-+..-..... ......++...|.++.++|......|++... ..+..++.
T Consensus 93 k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~-~~~~~~i~ 171 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLD-NNIPSSLR 171 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHh-ccchhHHH
Confidence 455544 788888888888877776655321110000 0001122333444555555544444444332 22233333
Q ss_pred H-HHHHHHHHHHHHHHHhhh
Q 015276 160 L-MRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 160 l-m~kvE~Lk~Eke~le~~~ 178 (410)
+ ...++.|+.+...|+...
T Consensus 172 ~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 172 VLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 2 355666666666665544
No 13
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=62.26 E-value=62 Score=28.51 Aligned_cols=121 Identities=17% Similarity=0.097 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 015276 86 EAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVE 165 (410)
Q Consensus 86 E~e~~~~L~~lI~d~DrkI~~~k~RLe~~~ee~~~~~~~~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE 165 (410)
+..++.-+-+++.+++|-=.-+.. ++........... ....+.|..+-+.+..++..+-..-..++++.|..+...-+
T Consensus 76 dlr~i~~~l~i~~dlERIgD~a~~-Ia~~~~~~~~~~~-~~~~~~l~~m~~~v~~~l~~a~~a~~~~d~~~a~~v~~~d~ 153 (216)
T 2i0m_A 76 DLRFVISIMSSCSDLERMGDHMAG-IAKAVLQLKENQL-APDEEQLHQMGKLSLSMLADLLVAFPLHQASKAISIAQKDE 153 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSCCSSCC-C--CHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccCC-chHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344445555666666665443331 2211000000001 11215688899999999999999999999988776665333
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhccccccc--cchhhhccchhhHhhhhhc
Q 015276 166 ILNVEKTTLTQQSQNDKVLMMAQEKKMALCEI--CGSFLVANDAAERTQSHIS 216 (410)
Q Consensus 166 ~Lk~Eke~le~~~~~~~~~~~~~~qkl~VCeV--CGA~Ls~~D~d~Rl~dH~~ 216 (410)
.+-..-..+.+.. ... + +-..|.+ +-.|+.+..+-+|++||..
T Consensus 154 ~iD~l~~~~~~~~-~~~--l-----~~~~~~~~~~~~~~~i~~~lERI~Dha~ 198 (216)
T 2i0m_A 154 QIDQYYYALSKEI-IGL--M-----KDQETSIPNGTQYLYIIGHLERFADYIA 198 (216)
T ss_dssp HHHHHHHHHHHHH-HHT--T-----TSCC-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHH--H-----HhCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222222221 000 0 0124553 3346778889999999975
No 14
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=61.24 E-value=66 Score=29.96 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhc
Q 015276 126 EKSEQLSVLEEKIKNLLEQVETLGEA 151 (410)
Q Consensus 126 ~~~eeI~~LeekI~~Ll~eaEeLGee 151 (410)
....+|..+..+|..+-.++-++.+.
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666665553
No 15
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=60.40 E-value=32 Score=27.80 Aligned_cols=70 Identities=24% Similarity=0.337 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC----CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 015276 92 FCEKLVMDLDRRVRRGRERLSQEV----EPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEIL 167 (410)
Q Consensus 92 ~L~~lI~d~DrkI~~~k~RLe~~~----ee~~~~~~~~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~L 167 (410)
.+-.+|+++|.++......+.+.. .... ..+++ .+...+ .+|...+.++..|+++ +|.-|+.....|+.-
T Consensus 22 r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~--~~~~~--~r~~~l-~~I~~~~~~~~~l~dE-Kv~lA~~~~dlvdkh 95 (104)
T 4afl_A 22 RNFQLMRDLDQRTEDLKAEIDKLATEYMSSAR--SLSSE--EKLALL-KQIQEAYGKCKEFGDD-KVQLAMQTYEMVDKH 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS--CCCHH--HHHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCChh--hhHHHH-HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344567777777766666654321 0011 12222 223344 7888888999888875 444444444444443
No 16
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=58.27 E-value=21 Score=32.51 Aligned_cols=12 Identities=50% Similarity=1.129 Sum_probs=9.0
Q ss_pred hccccccccchh
Q 015276 190 KKMALCEICGSF 201 (410)
Q Consensus 190 qkl~VCeVCGA~ 201 (410)
.+..||.|||-.
T Consensus 169 ~~~~~C~~CG~i 180 (202)
T 1yuz_A 169 DKFHLCPICGYI 180 (202)
T ss_dssp CCEEECSSSCCE
T ss_pred CcEEEECCCCCE
Confidence 456899999954
No 17
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=58.03 E-value=74 Score=25.80 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHH---HHHHHHHHHhhcCCHHHHH
Q 015276 82 VPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIK---NLLEQVETLGEAGKVDEAE 158 (410)
Q Consensus 82 ~~~YE~e~~~~L~~lI~d~DrkI~~~k~RLe~~~ee~~~~~~~~~~~eeI~~LeekI~---~Ll~eaEeLGeeGeVdeAq 158 (410)
|.+||.+|-..+..+-..|++ . .... ...+....|..++..|. +||.+.|.-...-....=.
T Consensus 17 Fe~YE~df~~l~~~i~~kl~~----i----~~~~-------~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~ 81 (102)
T 2qyw_A 17 FEKLHEIFRGLLEDLQGVPER----L----LGTA-------GTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRN 81 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----H----HTCC-------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----h----cccC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 458999998776666554442 2 1100 11222223333333222 2233322222222333335
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 015276 159 ALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 159 ~lm~kvE~Lk~Eke~le~~~ 178 (410)
.+..++...+.+.+.|+.++
T Consensus 82 ~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 82 PMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 66777777777777666543
No 18
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=56.47 E-value=53 Score=25.87 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh--------cCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 015276 126 EKSEQLSVLEEKIKNLLEQVETLGE--------AGKVDEAEALMRKVEILNVEKTTLTQQ 177 (410)
Q Consensus 126 ~~~eeI~~LeekI~~Ll~eaEeLGe--------eGeVdeAq~lm~kvE~Lk~Eke~le~~ 177 (410)
..+.++..|..+|..|-+++..|-. ..+.+..+.++.+++.+..+.+.+...
T Consensus 19 keqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~er 78 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777766555554432 246677788888888888777766544
No 19
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.43 E-value=6.2 Score=30.53 Aligned_cols=29 Identities=21% Similarity=0.623 Sum_probs=19.6
Q ss_pred CCCCCCCcchhhcCCChhHhhhhcccCCCCCCCCCcHH
Q 015276 30 KWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQK 67 (410)
Q Consensus 30 ~f~D~~VCk~yLvG~CPhdLF~NTK~DLG~C~kiHd~~ 67 (410)
.++-..||++||-|.|. +.| .|+-.|+..
T Consensus 6 ~~~k~~~C~~fl~G~C~-------~G~--~C~fsH~~~ 34 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCK-------KGD--QCEFLHEYD 34 (77)
T ss_dssp SCCTTSBCHHHHTTCCS-------CTT--SSSSBCSCC
T ss_pred CCCcceeCHhHccCcCC-------CCC--CCCCccccc
Confidence 35566789999999992 222 577777654
No 20
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=54.91 E-value=53 Score=29.59 Aligned_cols=80 Identities=10% Similarity=-0.007 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc--ccchhhhccc
Q 015276 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCE--ICGSFLVAND 206 (410)
Q Consensus 129 eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~~~~~~~~~~~~qkl~VCe--VCGA~Ls~~D 206 (410)
+.|..+-..+..++..+-..-..++++.|..+...-+.+-..-..+.+.. ... + .+ ..|. .+-.|+.+..
T Consensus 117 ~~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~l~~~~-~~~--l--~~---~~~~~~~~~~~l~i~~ 188 (235)
T 1sum_B 117 EDIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREEL-LLY--M--ME---SPKYVKRALLLLEIAG 188 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHHHHHHHH-HHH--H--HH---CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--H--Hh---CCCcHHHHHHHHHHHH
Confidence 45888888889999999998899999888766654433333222333222 110 0 01 1344 3455777888
Q ss_pred hhhHhhhhhc
Q 015276 207 AAERTQSHIS 216 (410)
Q Consensus 207 ~d~Rl~dH~~ 216 (410)
+-+|++||..
T Consensus 189 ~lERI~Dha~ 198 (235)
T 1sum_B 189 NIEIIADYAT 198 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 21
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=54.41 E-value=4.6 Score=30.74 Aligned_cols=25 Identities=36% Similarity=0.611 Sum_probs=17.8
Q ss_pred CCCCCcchhhcCCChhHhhhhcccCCC--CCCCCCcH
Q 015276 32 DDKEVCPFYMVRFCPHDLFVNTRSDLG--PCPRIHDQ 66 (410)
Q Consensus 32 ~D~~VCk~yLvG~CPhdLF~NTK~DLG--~C~kiHd~ 66 (410)
+--.||+.||-|.| .-| .|+-.|++
T Consensus 4 ~k~~vC~~f~~G~C----------~rg~~~C~f~H~~ 30 (70)
T 3d2q_A 4 DRLEVCREYQRGNC----------NRGENDCRFAHPA 30 (70)
T ss_dssp CEEEBCHHHHTTCC----------SSCTTTCSSBCCC
T ss_pred ccchhCHHHhcCCC----------CCCCCCCCCccCc
Confidence 33469999999999 334 57777754
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.22 E-value=29 Score=27.62 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 015276 160 LMRKVEILNVEKTT 173 (410)
Q Consensus 160 lm~kvE~Lk~Eke~ 173 (410)
+..+.+.|+.+...
T Consensus 53 L~~en~qLk~E~~~ 66 (81)
T 2jee_A 53 LERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 23
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=53.00 E-value=7.2 Score=33.38 Aligned_cols=43 Identities=21% Similarity=0.197 Sum_probs=32.9
Q ss_pred ceeccCCCccccccccceeeeeeeeeecchhhhhccCcccceeeEEeeec
Q 015276 346 YFVETLPSPFHQILLKEKRVEIRVFLELKFQKWVSDGYRPFSCTIIFFNE 395 (410)
Q Consensus 346 ~~~d~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (410)
.|.+.|.+| .+|+.-+ +|..+---||++|=|-|++|+|+-+|+
T Consensus 35 v~velp~vG-~~v~~G~------~~~~VES~K~~sdi~aPvsG~VvevN~ 77 (125)
T 3klr_A 35 VYCSLPEVG-TKLNKQE------EFGALESVKAASELYSPLSGEVTEINK 77 (125)
T ss_dssp EEEECCCTT-CEECTTC------EEEEEEESSCEEEEECSSSEEEEEECG
T ss_pred EEEEeCCCC-CEEcCCC------EEEEEEEcceeeeeecCCCEEEEEEhh
Confidence 578888777 4455444 344445679999999999999999997
No 24
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=50.86 E-value=63 Score=32.51 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 131 I~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~ 178 (410)
|.+++.+|..+..+.+.+...++.+.|..+..+.+.|+++.+.++...
T Consensus 396 i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (468)
T 3pxg_A 396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSW 443 (468)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888889999999999999999999988887664
No 25
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=50.30 E-value=5.4 Score=32.50 Aligned_cols=23 Identities=39% Similarity=1.168 Sum_probs=17.6
Q ss_pred CCCCcchhhcCCChhHhhhhcccCCC-CCCCCCc
Q 015276 33 DKEVCPFYMVRFCPHDLFVNTRSDLG-PCPRIHD 65 (410)
Q Consensus 33 D~~VCk~yLvG~CPhdLF~NTK~DLG-~C~kiHd 65 (410)
-..||++|+-|.|.+ | .|+-.|+
T Consensus 12 k~~lC~~f~~G~C~~----------G~~C~f~H~ 35 (98)
T 2cqe_A 12 KRELCKFYITGFCAR----------AENCPYMHG 35 (98)
T ss_dssp CCSBCTTTTTTCCSC----------STTCSSBSS
T ss_pred CCccCcccccCcCCC----------CCCCCCCCC
Confidence 457999999999954 4 4777776
No 26
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=49.86 E-value=37 Score=30.44 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=7.9
Q ss_pred ccccccccchh
Q 015276 191 KMALCEICGSF 201 (410)
Q Consensus 191 kl~VCeVCGA~ 201 (410)
+..+|.|||-.
T Consensus 154 ~~~~C~~CG~~ 164 (191)
T 1lko_A 154 TKWRCRNCGYV 164 (191)
T ss_dssp EEEEETTTCCE
T ss_pred ceEEECCCCCE
Confidence 36788888844
No 27
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=48.41 E-value=7.5 Score=29.87 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=19.7
Q ss_pred CCCCCCCcchhhcCCChhHhhhhcccCCCCCCCCCcH
Q 015276 30 KWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66 (410)
Q Consensus 30 ~f~D~~VCk~yLvG~CPhdLF~NTK~DLG~C~kiHd~ 66 (410)
.+.-..||++||-|.|.. .| .|+-.|+.
T Consensus 12 ~~~k~~vCk~fl~G~C~~-------G~--~C~fsH~~ 39 (72)
T 2rhk_C 12 SGEKTVVCKHWLRGLCKK-------GD--QCEFLHEY 39 (72)
T ss_dssp SCCCCSBCHHHHTTCCCC-------GG--GSSSBCSC
T ss_pred CCCcCeeCHHHhcCCCCC-------CC--CCCCcccc
Confidence 456668999999999932 12 37777764
No 28
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=48.28 E-value=23 Score=36.26 Aligned_cols=49 Identities=10% Similarity=0.193 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 128 SEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 128 ~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~ 178 (410)
..++..|..+.+.+-++|-++...| +++..+++++..|+++.+.|+++.
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~ 92 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKG--EPVDELLAKSREIVKRIGELENEV 92 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSC--CCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccc--ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666667777776665555 345666677777776666666554
No 29
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=46.21 E-value=23 Score=29.97 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccccchhhhccchh
Q 015276 132 SVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAA 208 (410)
Q Consensus 132 ~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d 208 (410)
....+.|+-|.+-|..+ ..++.+-|...+..+..+-.+ . ..-.+..-|-.+|.-||++|+-+-|-
T Consensus 12 ~ia~~Ri~~L~~~A~~~-~~~~p~LSr~Y~~~~~~Is~K-------~----~irlp~~~KR~~Ck~C~s~LIPG~t~ 76 (123)
T 2k3r_A 12 RIAKERIDILFSLAERV-FPYSPELAKRYVELALLVQQK-------A----KVKIPRKWKRRYCKKCHAFLVPGINA 76 (123)
T ss_dssp ---CHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHHHH-------H----TCCCSSTTTTSBCTTTCCBCCBTTTE
T ss_pred HHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHH-------h----ccCCCHHHHHHhccCCCCEeECCCce
Confidence 34567788888888887 456666666666655444321 1 01233556788999999999987554
No 30
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=46.16 E-value=30 Score=35.87 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 130 eI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~ 178 (410)
++..|..+.+.+-++|-+|...|+ ++..+++++..|+++.+.|++++
T Consensus 48 ~~~~l~~~rn~~sk~i~~~k~~~~--~~~~l~~~~~~l~~~i~~le~~~ 94 (485)
T 3qne_A 48 DLDEHNKKLNSVQKEIGKRFKAKE--DAKDLIAEKEKLSNEKKEIIEKE 94 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544553 35556666666666666665543
No 31
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=44.71 E-value=62 Score=30.00 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccccchhhhccchh
Q 015276 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAA 208 (410)
Q Consensus 129 eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d 208 (410)
+++..+..+|..|-+++++|-+ .-+.+.++.+-++. ..+++. ....+..+..++..+|-+.|+-
T Consensus 59 ~e~~~l~~~l~~l~~e~~el~d-----~~lR~~AEfeN~Rk---R~~rE~--------e~~~~~a~e~~~~~LLpVlDnl 122 (213)
T 4ani_A 59 EELAAAKAQIAELEAKLSEMEH-----RYLRLYADFENFRR---RTRQEM--------EAAEKYRAQSLASDLLPVLDNF 122 (213)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH---HHHHHH--------HHHHHHTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH---HHHHHH--------HHHHHHHHHHHHHHHhHHHHHH
Confidence 4566677777777777666643 23444444444432 111111 1123445667899999999999
Q ss_pred hHhhhhhcc-----cccccHHHHHHHHHH
Q 015276 209 ERTQSHISG-----KQHIGYGMVRDFITE 232 (410)
Q Consensus 209 ~Rl~dH~~G-----K~HlGy~kIRe~l~e 232 (410)
.|.-.|... .++-|+..|...|..
T Consensus 123 erAl~~~~~~~~~~~l~eGvemi~k~l~~ 151 (213)
T 4ani_A 123 ERALKIETDNEQAKSILQGMEMVYRSLVD 151 (213)
T ss_dssp HHHHSCCSCCSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 997666532 345566555444433
No 32
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.10 E-value=1.7e+02 Score=29.84 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 015276 157 AEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 157 Aq~lm~kvE~Lk~Eke~le~~~ 178 (410)
+.+.+++.+.+++++.++++..
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHH
Confidence 4556667777777777776654
No 33
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=43.38 E-value=93 Score=22.64 Aligned_cols=42 Identities=24% Similarity=0.335 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 015276 134 LEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (410)
Q Consensus 134 LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le 175 (410)
|.++|..+-.-|+++-.+|+.||..-|-.-+.+|+.+...++
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666777778888888888777777777776665543
No 34
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=43.34 E-value=9.9 Score=30.15 Aligned_cols=18 Identities=28% Similarity=0.480 Sum_probs=10.6
Q ss_pred CCCCCCCCCcHH-HHHHhh
Q 015276 56 DLGPCPRIHDQK-LKESFE 73 (410)
Q Consensus 56 DLG~C~kiHd~~-lK~~Ye 73 (410)
.-|.|+-+|.+. |++.+.
T Consensus 55 ~r~~C~y~H~~~~l~~~~~ 73 (83)
T 3d2n_A 55 SRENCKYLHPPPHLKTQLE 73 (83)
T ss_dssp CCSSCSSCCCCHHHHHHHH
T ss_pred cCCCcceeCChHHHHHHHh
Confidence 345788888764 444433
No 35
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=43.31 E-value=1.3e+02 Score=24.28 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 015276 158 EALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 158 q~lm~kvE~Lk~Eke~le~~~ 178 (410)
-.+..++...+.+.+.|+.++
T Consensus 70 ~~~~~klr~Yk~dL~~lk~el 90 (102)
T 1vcs_A 70 GMYSNRMRSYKQEMGKLETDF 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999888888776
No 36
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=42.73 E-value=61 Score=28.68 Aligned_cols=12 Identities=50% Similarity=1.043 Sum_probs=8.6
Q ss_pred hccccccccchh
Q 015276 190 KKMALCEICGSF 201 (410)
Q Consensus 190 qkl~VCeVCGA~ 201 (410)
.+..||.|||-.
T Consensus 136 ~~~~~C~~CG~i 147 (170)
T 3pwf_A 136 KKVYICPICGYT 147 (170)
T ss_dssp SCEEECTTTCCE
T ss_pred CCeeEeCCCCCe
Confidence 456788888854
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.66 E-value=16 Score=38.27 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=14.1
Q ss_pred CCCCcchhhcCCChhHhhhhcccCCCC-CC
Q 015276 33 DKEVCPFYMVRFCPHDLFVNTRSDLGP-CP 61 (410)
Q Consensus 33 D~~VCk~yLvG~CPhdLF~NTK~DLG~-C~ 61 (410)
....||-.=--||..+ |+|+ ||
T Consensus 24 ~qs~Cke~~WPfCaDe-------DwGvkCP 46 (562)
T 3ghg_A 24 HQSACKDSDWPFCSDE-------DWNYKCP 46 (562)
T ss_dssp ---CCCCCCCCBCCSS-------SBTTEEE
T ss_pred cccccccCCCCccccc-------ccCCCCC
Confidence 4578887777888544 7885 87
No 38
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.10 E-value=56 Score=33.18 Aligned_cols=24 Identities=8% Similarity=-0.159 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 015276 88 ELAQFCEKLVMDLDRRVRRGRERL 111 (410)
Q Consensus 88 e~~~~L~~lI~d~DrkI~~~k~RL 111 (410)
.-++.|+.+|.+++.....++.-+
T Consensus 38 ~~l~~LE~~l~elsn~ts~v~~Lv 61 (409)
T 1m1j_C 38 GELLEIEGLLQQATNSTGSIEYLI 61 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888888888877776544
No 39
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.73 E-value=5.2 Score=32.71 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=12.4
Q ss_pred CCCCcchhhcCCChh
Q 015276 33 DKEVCPFYMVRFCPH 47 (410)
Q Consensus 33 D~~VCk~yLvG~CPh 47 (410)
--.||++||-|.|..
T Consensus 19 k~~VCr~FlrG~C~r 33 (98)
T 2e5s_A 19 KLEVCREFQRGNCAR 33 (98)
T ss_dssp EEEBCSHHHHTCCSS
T ss_pred hhhhhHHHhcCcCCC
Confidence 337999999999964
No 40
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=40.25 E-value=1e+02 Score=22.20 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q 015276 134 LEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKT 172 (410)
Q Consensus 134 LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke 172 (410)
|.++|..+-.-|+.+..+|+.||...|-.-+.+|..|.+
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 445555666667777888888888887777777766543
No 41
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=39.58 E-value=6.2 Score=29.29 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=24.3
Q ss_pred ccccccchhhhccchhhHhhhhhcccccccHHHH
Q 015276 193 ALCEICGSFLVANDAAERTQSHISGKQHIGYGMV 226 (410)
Q Consensus 193 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy~kI 226 (410)
.-|+.||.- .++--=|.||+--+||++.+++
T Consensus 14 ~eC~lC~vk---Ys~r~slqDHIFs~qHI~~vk~ 44 (55)
T 2yrk_A 14 PECTLCGVK---YSARLSIRDHIFSKQHISKVRE 44 (55)
T ss_dssp SCCTTTTCC---CCSSSCHHHHHTSHHHHHHHHH
T ss_pred ccccccCcc---cccccchhhhhccHHHHHHHHH
Confidence 579999964 4555668999999999987653
No 42
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=39.18 E-value=54 Score=34.05 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC------HHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 129 EQLSVLEEKIKNLLEQVETLGEAGK------VDEAEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 129 eeI~~LeekI~~Ll~eaEeLGeeGe------VdeAq~lm~kvE~Lk~Eke~le~~~ 178 (410)
.++..|..+.+.+.++|-++...|+ -+++..+++++..|+++.+.|+++.
T Consensus 84 ~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~ 139 (501)
T 1wle_A 84 EQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKE 139 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544442 1466777888888887777776654
No 43
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=38.76 E-value=7.4 Score=32.83 Aligned_cols=31 Identities=26% Similarity=0.405 Sum_probs=24.4
Q ss_pred ccccccccchhhhccchhhHhhhhhcccccccHH
Q 015276 191 KMALCEICGSFLVANDAAERTQSHISGKQHIGYG 224 (410)
Q Consensus 191 kl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy~ 224 (410)
...-|++|... ..+..=+..|+.||.|.-=+
T Consensus 92 ~~~~C~~C~~~---f~s~~~~~~H~~gk~H~~~~ 122 (127)
T 1zu1_A 92 RSKCCPVCNMT---FSSPVVAESHYIGKTHIKNL 122 (127)
T ss_dssp TTTEETTTTEE---CSSHHHHHHHHTSHHHHHHH
T ss_pred CCeEcCCCCCE---eCCHHHHHHHHCCHHHHHHH
Confidence 34679999975 44778899999999997433
No 44
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=38.08 E-value=12 Score=28.30 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=19.7
Q ss_pred CCCcchhhcCCChhHhhhhcccCCCCCCCCCcHH
Q 015276 34 KEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQK 67 (410)
Q Consensus 34 ~~VCk~yLvG~CPhdLF~NTK~DLG~C~kiHd~~ 67 (410)
-.||++||=|.|+ -|.|+-+|.+.
T Consensus 42 ~~vC~~flkG~C~----------r~~C~y~H~~~ 65 (70)
T 3d2q_A 42 VTVCMDYIKGRCS----------REKCKYFHPPA 65 (70)
T ss_dssp EEBCHHHHTTCCC----------CTTCCSBCCCH
T ss_pred ceeccccCcCCCC----------CCCcCeeCCHH
Confidence 3589999999993 35899999874
No 45
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=37.97 E-value=1e+02 Score=34.98 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 125 ~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~ 178 (410)
....+++..+++++.++.++.+.|-+.-+-.. ..+-++|..|+++...|+++.
T Consensus 987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~-~~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYK-HETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666633321111 244466666777777776665
No 46
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=37.63 E-value=2.4e+02 Score=26.04 Aligned_cols=66 Identities=14% Similarity=0.206 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 015276 95 KLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174 (410)
Q Consensus 95 ~lI~d~DrkI~~~k~RLe~~~ee~~~~~~~~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~l 174 (410)
..+++|.+.|+++...|+ .+|..|+.+=..+..+|..+...|+++.|-.+...+=..+.+...+
T Consensus 10 e~~r~~~r~Lr~~~R~Ld----------------R~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl 73 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVD----------------RQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKL 73 (218)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766663 3444555555566778888889999999888888777777666655
Q ss_pred Hh
Q 015276 175 TQ 176 (410)
Q Consensus 175 e~ 176 (410)
-.
T Consensus 74 ~~ 75 (218)
T 3frt_A 74 YA 75 (218)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 47
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.27 E-value=16 Score=29.71 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=22.9
Q ss_pred CCcchhhcCCChhHhhhhcccCCCCCCCCCcH-HHHHHhhc
Q 015276 35 EVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ-KLKESFEK 74 (410)
Q Consensus 35 ~VCk~yLvG~CPhdLF~NTK~DLG~C~kiHd~-~lK~~Ye~ 74 (410)
.||++||=|.|+ -|.|+-.|.+ .|++.++.
T Consensus 57 ~vC~~flkG~C~----------r~~C~y~H~~~~l~~~~~~ 87 (98)
T 2e5s_A 57 TVCMDYIKGRCM----------REKCKYFHPPAHLQAKIKA 87 (98)
T ss_dssp EBCHHHHHTCCC----------CTTCCSBCCCHHHHHHHHH
T ss_pred ccchhhccCCCC----------CCCcCccCChHHHHHHHHH
Confidence 499999999993 3589999997 45555543
No 48
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.25 E-value=1.2e+02 Score=29.99 Aligned_cols=53 Identities=25% Similarity=0.248 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-------HhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 125 AEKSEQLSVLEEKIKNLLEQVET-------LGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 125 ~~~~eeI~~LeekI~~Ll~eaEe-------LGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~ 178 (410)
..++++|.+++.....+-+++.. |.+.=+-..||++ ++|++|..|..+|.+++
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 459 (471)
T 3mq9_A 400 HLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ-KKVEELEGEITTLNHKL 459 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 44555555555554444333332 2222222333322 45666666666665554
No 49
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=36.08 E-value=1e+02 Score=23.75 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 015276 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174 (410)
Q Consensus 133 ~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~l 174 (410)
=|.++|..+-.-|+++-.+|+.||..-|-.-+.+|+.+...+
T Consensus 24 PL~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~ 65 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQ 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677778888888888777776666666665544
No 50
>3u8p_A Cytochrome B562 integral fusion with enhanced GRE fluorescent protein; directed evolution, domain insertion, energy transfer, fluor quenching; HET: CRO HEM; 2.75A {Aequorea victoria}
Probab=35.56 E-value=1.2e+02 Score=30.18 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=23.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 143 EQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 143 ~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~ 178 (410)
.+|-.|..+|+++||+++..+ +++.+.+..+.+
T Consensus 116 D~a~~la~~g~l~eAkk~a~~---~~~~r~~yHk~~ 148 (347)
T 3u8p_A 116 DDALKLANEGKVKEAQAAAEQ---LKTTRNAYHQKY 148 (347)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT---HHHHHHHHHHHH
T ss_pred hHHHHhhhccchHHHHHHHHH---hHhHHHhhhhhc
Confidence 456679999999999987654 444444555544
No 51
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=35.07 E-value=13 Score=32.95 Aligned_cols=43 Identities=30% Similarity=0.255 Sum_probs=32.1
Q ss_pred ceeccCCCccccccccceeeeeeeeeecchhhhhccCcccceeeEEeeec
Q 015276 346 YFVETLPSPFHQILLKEKRVEIRVFLELKFQKWVSDGYRPFSCTIIFFNE 395 (410)
Q Consensus 346 ~~~d~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (410)
.|.+.|.+|- .|+.-+ .|..+--.||+||=|-|+|++|+-+|+
T Consensus 62 vfVeLP~vG~-~v~~Gd------~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 62 VFVQLPVIGT-AVTAGE------TFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp EEEECCCTTC-EECTTC------EEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred EEEEcCCCCC-EEeCCC------EEEEEEecceeeeeecCcceEEEEEhh
Confidence 5777777775 344443 344445579999999999999999997
No 52
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=34.94 E-value=22 Score=28.52 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=13.4
Q ss_pred CCCCCCCcchhhcCCChhH
Q 015276 30 KWDDKEVCPFYMVRFCPHD 48 (410)
Q Consensus 30 ~f~D~~VCk~yLvG~CPhd 48 (410)
.|.--.||+.||-|.|.-.
T Consensus 13 ~~~~~~VCrdFlrG~C~r~ 31 (89)
T 2rpp_A 13 KWLTLEVCRQFQRGTCSRS 31 (89)
T ss_dssp SSSEECBCHHHHHTCCCCC
T ss_pred CcchhhhchHHhcCCCCCC
Confidence 3444569999999888543
No 53
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=34.60 E-value=2.7e+02 Score=25.49 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 015276 128 SEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177 (410)
Q Consensus 128 ~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~ 177 (410)
.++...++..++.+.++.|++..+-+--|.+-+..=+.-|+++|.++.+.
T Consensus 145 ~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~l 194 (213)
T 1ik9_A 145 QKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSL 194 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34566788888888999999988877777776666677777777776653
No 54
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=34.53 E-value=95 Score=26.42 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 015276 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ 176 (410)
Q Consensus 129 eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~ 176 (410)
.+|..|+.++..+--+...+-..|+.+-.-.+..+++.|..+...|..
T Consensus 10 ~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 10 NEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555443
No 55
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=34.15 E-value=39 Score=23.37 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 015276 135 EEKIKNLLEQVETLGEAGKVDEAEALMRKVEI 166 (410)
Q Consensus 135 eekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~ 166 (410)
...|..+-++|...-.+|+++.+-.|-.+++.
T Consensus 7 ~d~I~aiEQqiyvA~seGd~etv~~Le~QL~~ 38 (40)
T 1gp8_A 7 AANKDAIRKQMDAAASKGDVETYRKLKAKLKG 38 (40)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34566777899999999999998877666543
No 56
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=34.14 E-value=7.8 Score=32.72 Aligned_cols=28 Identities=18% Similarity=0.593 Sum_probs=22.9
Q ss_pred ccccccccchhhhccchhhHhhhhhcccccc
Q 015276 191 KMALCEICGSFLVANDAAERTQSHISGKQHI 221 (410)
Q Consensus 191 kl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~Hl 221 (410)
+-..|.+|.+.+. +..-+..|+.||.|.
T Consensus 31 ~~~~C~~C~v~~~---S~s~~~~H~~gkkH~ 58 (127)
T 1zu1_A 31 SDTQCKVCSAVLI---SESQKLAHYQSRKHA 58 (127)
T ss_dssp CSSEETTTTEECC---SHHHHHHHHHCHHHH
T ss_pred CCCcCcCCCCEeC---CHHHHHHHHCcHHHH
Confidence 4468999998543 667789999999997
No 57
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=33.51 E-value=2.2e+02 Score=24.92 Aligned_cols=80 Identities=9% Similarity=0.059 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc--cchhhhccc
Q 015276 129 EQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEI--CGSFLVAND 206 (410)
Q Consensus 129 eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~~~~~~~~~~~~qkl~VCeV--CGA~Ls~~D 206 (410)
..|..+-+.+..++..+-..-..++++.|..+...-+.+-..-.++.+.. ... -+-..|.+ +-.|+.+..
T Consensus 117 ~~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~i~~ 188 (217)
T 1xwm_A 117 GPLVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASL-LAV-------AKTDAATLAQMNVLALVAR 188 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH-HSC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------HHhCcccHHHHHHHHHHHH
Confidence 46889999999999999998889999888776654443333222232221 100 00123433 344677788
Q ss_pred hhhHhhhhhc
Q 015276 207 AAERTQSHIS 216 (410)
Q Consensus 207 ~d~Rl~dH~~ 216 (410)
+-+|++||.+
T Consensus 189 ~lERI~Dha~ 198 (217)
T 1xwm_A 189 YIERTADHAT 198 (217)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999975
No 58
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=32.82 E-value=15 Score=32.10 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=32.0
Q ss_pred ceeccCCCccccccccceeeeeeeeeecchhhhhccCcccceeeEEeeec
Q 015276 346 YFVETLPSPFHQILLKEKRVEIRVFLELKFQKWVSDGYRPFSCTIIFFNE 395 (410)
Q Consensus 346 ~~~d~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (410)
.|.+.|.+|- +|+.-+ +|..+--.||++|=|-|++|+|+-+|+
T Consensus 57 vfVelP~vG~-~v~~Gd------~~~~VES~Ka~sdi~sPvsG~VvevN~ 99 (143)
T 3mxu_A 57 VFIDLPQNGT-KLSKGD------AAAVVESVKAASDVYAPLDGEVVEINA 99 (143)
T ss_dssp EEEECCCTTC-EECTTC------EEEEEEESSCEEEEECSSSEEEEEECG
T ss_pred EEEEcCCCCC-EeeCCC------EEEEEEecceeeeeecCcceEEEEEhh
Confidence 5777777764 344433 344455679999999999999999997
No 59
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=32.47 E-value=1.1e+02 Score=27.78 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=28.1
Q ss_pred hccccccccchhhhccchhhHhhhhhcc------cccccHHHHHHHH
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHISG------KQHIGYGMVRDFI 230 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~G------K~HlGy~kIRe~l 230 (410)
.+..+..++..+|-+.|+-.|.-.|..+ .++-|+..|...|
T Consensus 84 ~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~l~~Gv~~~~~~l 130 (197)
T 1dkg_A 84 HKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEDIELTLKSM 130 (197)
T ss_dssp HHTSGGGHHHHSHHHHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhccccchHHHHHHHHHHHHHHH
Confidence 4556778999999999999997777632 2445655554433
No 60
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=32.43 E-value=1e+02 Score=24.96 Aligned_cols=37 Identities=5% Similarity=-0.115 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 015276 134 LEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE 170 (410)
Q Consensus 134 LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~E 170 (410)
+..++..+..++..++..|+++++..++.++..++.+
T Consensus 103 ~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~ 139 (143)
T 2r6a_C 103 KWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKM 139 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3455667777888888899999999988887777654
No 61
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=32.36 E-value=1.5e+02 Score=26.07 Aligned_cols=84 Identities=10% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccccc---cccchh
Q 015276 125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALC---EICGSF 201 (410)
Q Consensus 125 ~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~~~~~~~~~~~~qkl~VC---eVCGA~ 201 (410)
.+..++|..+-..+..++..+-.+-..++.+.|..+...=+.+.....++.... ...-..+.-+| ..+-++
T Consensus 14 ~~~~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~------~~~l~~~~~~~~d~~~~~~~ 87 (227)
T 1t72_A 14 EETKEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRC------IRMIALYQPEAGDLRMIMGI 87 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHH------HHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHhcCCChHHHHHHHHH
Q ss_pred hhccchhhHhhhh
Q 015276 202 LVANDAAERTQSH 214 (410)
Q Consensus 202 Ls~~D~d~Rl~dH 214 (410)
|.+..+-+|+.||
T Consensus 88 l~i~~~lERIgD~ 100 (227)
T 1t72_A 88 YKIVSDLERMGDE 100 (227)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 62
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=32.32 E-value=75 Score=25.32 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 015276 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNV 169 (410)
Q Consensus 133 ~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~ 169 (410)
.+-..|...+.+++++.+.|+.++|+.++..+...-.
T Consensus 21 ~~kS~~rT~iKk~~~Ai~~gd~~~A~~~l~~a~~~iD 57 (85)
T 3r8n_T 21 SRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVD 57 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4456677888999999999999999999988776643
No 63
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=31.85 E-value=1.3e+02 Score=29.72 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 015276 158 EALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 158 q~lm~kvE~Lk~Eke~le~~~ 178 (410)
.+.-.++.+|..+++.+++..
T Consensus 277 ~k~~~~~~~~~~~~~~~~~~~ 297 (426)
T 1lrz_A 277 KKAHNKRDNLQQQLDANEQKI 297 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555443
No 64
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=31.72 E-value=1.6e+02 Score=22.08 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 015276 132 SVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (410)
Q Consensus 132 ~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le 175 (410)
+-|.++|..+-.-|.++-.+|+.|+..-|-.-+.+|+.+...++
T Consensus 12 dpL~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777888888899999988888777777777665544
No 65
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=31.58 E-value=1.9e+02 Score=22.75 Aligned_cols=64 Identities=25% Similarity=0.257 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 015276 97 VMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ 176 (410)
Q Consensus 97 I~d~DrkI~~~k~RLe~~~ee~~~~~~~~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~ 176 (410)
+...+..+...+..|+.. .....+|+.+...|+++...|-.+ ..+|+ ..++.|...+.+|+.
T Consensus 16 m~~~eeel~~lke~l~k~-------------e~~rkele~~~~~l~~ek~~L~~q--l~eaE---e~~~~L~~~K~eLE~ 77 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKT-------------ERIKKELEEQNVTLLEQKNDLFGS--MKQLE---DKVEELLSKNYHLEN 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH--HHhHH---HHHHHHHHHHHHHHH
Confidence 344556666666666432 234556666666777777776666 44444 344555556666665
Q ss_pred hh
Q 015276 177 QS 178 (410)
Q Consensus 177 ~~ 178 (410)
.+
T Consensus 78 ~l 79 (89)
T 3bas_A 78 EV 79 (89)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 66
>2spc_A Spectrin; cytoskeleton; 1.80A {Drosophila melanogaster} SCOP: a.7.1.1
Probab=31.33 E-value=1.7e+02 Score=22.59 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 127 KSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 127 ~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~ 178 (410)
....|....++|..+...++.|.+.|-. .|..+...++.|......|....
T Consensus 48 fe~~~~~~~~~i~~l~~~a~~L~~~~h~-~~~~I~~r~~~l~~~w~~L~~~~ 98 (107)
T 2spc_A 48 FDKAINGHEQKIAALQTVADQLIAQNHY-ASNLVDEKRKQVLERWRHLKEGL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455778888888899999999888754 46667778888887777776543
No 67
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=30.81 E-value=13 Score=24.83 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=17.5
Q ss_pred ccccccchhhhccchhhHhhhhhc
Q 015276 193 ALCEICGSFLVANDAAERTQSHIS 216 (410)
Q Consensus 193 ~VCeVCGA~Ls~~D~d~Rl~dH~~ 216 (410)
.+|++|.+.|. +...|..||.
T Consensus 6 FiCP~C~~~l~---s~~~L~~Hye 26 (34)
T 3mjh_B 6 FICPQCMKSLG---SADELFKHYE 26 (34)
T ss_dssp EECTTTCCEES---SHHHHHHHHH
T ss_pred cCCcHHHHHcC---CHHHHHHHHH
Confidence 78999998866 6688999984
No 68
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=30.74 E-value=10 Score=23.75 Aligned_cols=9 Identities=22% Similarity=0.663 Sum_probs=7.2
Q ss_pred hhhcCCChh
Q 015276 39 FYMVRFCPH 47 (410)
Q Consensus 39 ~yLvG~CPh 47 (410)
--|+++|||
T Consensus 18 QDLL~lCPh 26 (26)
T 2h8b_A 18 QDLLTLCPY 26 (26)
T ss_dssp HHHHTTCCC
T ss_pred HHHHhhCCC
Confidence 358899998
No 69
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=30.59 E-value=1.8e+02 Score=25.42 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Q 015276 131 LSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174 (410)
Q Consensus 131 I~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~l 174 (410)
..++...|..++++++.+-+.|+.++|..++.++.=+..-..++
T Consensus 122 ~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~f~~kl~~~i 165 (174)
T 3hho_A 122 DTKVTAMQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEV 165 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888999999999999988877665554433333
No 70
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=30.08 E-value=2.1e+02 Score=24.82 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=9.7
Q ss_pred ccccccccchhh
Q 015276 191 KMALCEICGSFL 202 (410)
Q Consensus 191 kl~VCeVCGA~L 202 (410)
..-+|+.||.-+
T Consensus 110 ~yg~C~~Cg~~I 121 (151)
T 1tjl_A 110 DFGYCESCGVEI 121 (151)
T ss_dssp CCSBCSSSSCBC
T ss_pred CCceeCCCCCcc
Confidence 457999999875
No 71
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=29.98 E-value=15 Score=25.90 Aligned_cols=28 Identities=25% Similarity=0.565 Sum_probs=19.7
Q ss_pred hccccccccchhhhccchhhHhhhhhcc
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHISG 217 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~G 217 (410)
-..+||+-||.-++..---.-|+.|-.|
T Consensus 15 ~~YRvC~~CgkPi~lsAIvdHLenhC~~ 42 (44)
T 2lo3_A 15 IQYRVCEKCGKPLALTAIVDHLENHCAG 42 (44)
T ss_dssp CCEEECTTTCCEEETTTHHHHHHHCCTT
T ss_pred ccchhhcccCCcchHHHHHHHHHHHhcc
Confidence 3569999999998877654555555444
No 72
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=29.50 E-value=1.8e+02 Score=25.75 Aligned_cols=46 Identities=11% Similarity=0.028 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 015276 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (410)
Q Consensus 130 eI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le 175 (410)
-..++.++|..++++++++-+.++.++|..++.++.=+..-.+.+.
T Consensus 126 l~~~~~~~~~~~~~~l~~~~~~~d~~~A~~~~~kL~y~~kl~~~ik 171 (181)
T 3uo3_A 126 LEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELKYWYNLAKAFK 171 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778888888999999999999999888877766655444443
No 73
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=29.42 E-value=1.6e+02 Score=30.39 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=15.3
Q ss_pred CCCCCcc-hhhcCCChhHhhhhcccCCCC-CC
Q 015276 32 DDKEVCP-FYMVRFCPHDLFVNTRSDLGP-CP 61 (410)
Q Consensus 32 ~D~~VCk-~yLvG~CPhdLF~NTK~DLG~-C~ 61 (410)
.-..+|| -.=.|+|+. -|+|+ ||
T Consensus 23 r~~s~Ck~~~D~pgCaD-------eDwGvkCP 47 (491)
T 1m1j_A 23 MHESSCKYEKNWPICVD-------DDWGTKCP 47 (491)
T ss_dssp ----CCSSTTCCCBCCT-------TSTTTEEC
T ss_pred cccccccccCCCCCCcc-------ccccCCCC
Confidence 4678999 788999944 48885 88
No 74
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=29.37 E-value=3.6e+02 Score=25.28 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc--CCCCCCCC-C------chhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 015276 90 AQFCEKLVMDLDRRVRRGRERLSQE--VEPAPPPP-I------SAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEAL 160 (410)
Q Consensus 90 ~~~L~~lI~d~DrkI~~~k~RLe~~--~ee~~~~~-~------~~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~l 160 (410)
+..|..|+.+|+.-..=..++.... .+-..... . -.....+|...+..|+.+.+.++.|.++|-. .|..+
T Consensus 7 l~~L~qF~~d~~~e~~Wi~Eke~~~~~~D~~~~~~~l~~~~~kh~~le~El~a~e~~v~~v~~~g~~L~~~~hp-~~~~I 85 (283)
T 3pe0_A 7 LESLHSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKKESYSALMRELELKEKKIKELQNAGDRLLREDHP-ARPTV 85 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCT-THHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-ChHHH
Confidence 3456677777777665555444322 11111111 1 1234557778888999999999999999864 35566
Q ss_pred HHHHHHHHHHHHHHHhh
Q 015276 161 MRKVEILNVEKTTLTQQ 177 (410)
Q Consensus 161 m~kvE~Lk~Eke~le~~ 177 (410)
-+.++.|+.....|.+.
T Consensus 86 ~~r~~~L~~~W~~L~~l 102 (283)
T 3pe0_A 86 ESFQAALQTQWSWMLQL 102 (283)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67777777776666544
No 75
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=29.13 E-value=16 Score=25.18 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=19.2
Q ss_pred ccccccccchhhhccchhhHhhhhhc
Q 015276 191 KMALCEICGSFLVANDAAERTQSHIS 216 (410)
Q Consensus 191 kl~VCeVCGA~Ls~~D~d~Rl~dH~~ 216 (410)
...+|+-||..+.+.+.++-.+=||.
T Consensus 8 ~~~~C~~C~~~i~~~~~~EH~D~H~A 33 (39)
T 2i5o_A 8 DQVPCEKCGSLVPVWDMPEHMDYHFA 33 (39)
T ss_dssp CEEECTTTCCEEEGGGHHHHHHHHHH
T ss_pred CCcccccccCcCCcccccchhhHHHH
Confidence 45799999999888766665555553
No 76
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=28.95 E-value=9.1 Score=25.02 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=20.7
Q ss_pred hhcCCChhHhhhhcccCCCCCCC
Q 015276 40 YMVRFCPHDLFVNTRSDLGPCPR 62 (410)
Q Consensus 40 yLvG~CPhdLF~NTK~DLG~C~k 62 (410)
..+||+-.-||+-|=+|+|-|.|
T Consensus 4 ~~~~cwilvLfva~wsdvglcKK 26 (30)
T 1skh_A 4 SKIGSWILVLFVAMWSDVGLCKK 26 (30)
T ss_dssp TTTTTHHHHHHHHHHHHHTTSSS
T ss_pred ccccHHHHHHHHHHHhHHHHhhc
Confidence 35789999999999999999987
No 77
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=28.91 E-value=17 Score=22.61 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=11.1
Q ss_pred ccccccccchhhhcc
Q 015276 191 KMALCEICGSFLVAN 205 (410)
Q Consensus 191 kl~VCeVCGA~Ls~~ 205 (410)
+...|++||.-....
T Consensus 5 k~~~C~~C~k~f~~~ 19 (39)
T 1njq_A 5 RSYTCSFCKREFRSA 19 (39)
T ss_dssp SSEECTTTCCEESSH
T ss_pred CceECCCCCcccCCH
Confidence 558999999865543
No 78
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=28.62 E-value=1.1e+02 Score=24.27 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 015276 136 EKIKNLLEQVET 147 (410)
Q Consensus 136 ekI~~Ll~eaEe 147 (410)
+.|+.+++.-|.
T Consensus 23 ~NI~kvL~Rgek 34 (91)
T 3hd7_A 23 VNVDKVLERDQK 34 (91)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHccch
Confidence 333333333333
No 79
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.37 E-value=1.4e+02 Score=24.93 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Q 015276 96 LVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMR 162 (410)
Q Consensus 96 lI~d~DrkI~~~k~RLe~~~ee~~~~~~~~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~ 162 (410)
-++|+++|+..=-..|.... ..+. +...|.++-.....|+.+.|+.+..
T Consensus 37 ~~~D~~KRL~~LfdkLn~~~-------Ls~~-----------v~~~L~~l~~al~~~dy~~A~~ih~ 85 (118)
T 2yru_A 37 VCDDISRRLALLREQWAGGK-------LSIP-----------VKKRMALLVQELLHHQWDAADDIHR 85 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-------SCHH-----------HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-------CCHH-----------HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35666666666666664321 1122 2233444455566778888777653
No 80
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.31 E-value=1e+02 Score=26.42 Aligned_cols=20 Identities=0% Similarity=0.258 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 015276 91 QFCEKLVMDLDRRVRRGRER 110 (410)
Q Consensus 91 ~~L~~lI~d~DrkI~~~k~R 110 (410)
.+|..+...+|.+|+.-+.+
T Consensus 28 e~L~~vA~~vd~km~ei~~~ 47 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFNKE 47 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56777777888888776543
No 81
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.68 E-value=1.6e+02 Score=26.26 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHHHHHHHHHhhh
Q 015276 130 QLSVLEEKIKNLLEQVETLGEAGKVDEA--EALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 130 eI~~LeekI~~Ll~eaEeLGeeGeVdeA--q~lm~kvE~Lk~Eke~le~~~ 178 (410)
++..|..+|..+-.++.+|....+.|+| .++..++..|+.+......++
T Consensus 86 ~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~ 136 (175)
T 3lay_A 86 QTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777888888888887777654 566777777777666554443
No 82
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=27.25 E-value=2e+02 Score=22.47 Aligned_cols=27 Identities=11% Similarity=0.154 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 86 EAELAQFCEKLVMDLDRRVRRGRERLS 112 (410)
Q Consensus 86 E~e~~~~L~~lI~d~DrkI~~~k~RLe 112 (410)
|..=+.-|..-|..++.+|..-...|.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444466788888888888888888885
No 83
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=27.17 E-value=3.7e+02 Score=24.75 Aligned_cols=54 Identities=22% Similarity=0.360 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 124 SAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 124 ~~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~ 178 (410)
..++...|..+++.|..+...+++|-+ |+..+|..+...+..|......|...+
T Consensus 167 ~e~ie~dL~~~e~~i~~l~~~a~~L~~-~~y~~a~~i~~r~~~l~~~w~~L~~~~ 220 (235)
T 2odv_A 167 AGEVERDLDKADSMIRLLFNDVQTLKD-GRHPQGEQMYRRVYRLHKRLVAIRTEY 220 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777899999999999999999874 778888889999999999988887765
No 84
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=26.68 E-value=14 Score=29.76 Aligned_cols=14 Identities=57% Similarity=0.992 Sum_probs=9.6
Q ss_pred hhccccccccchhh
Q 015276 189 EKKMALCEICGSFL 202 (410)
Q Consensus 189 ~qkl~VCeVCGA~L 202 (410)
+-.|..|+|||+-|
T Consensus 5 ~~~~~~~PlCG~~L 18 (95)
T 2k5c_A 5 HHHMAKCPICGSPL 18 (95)
T ss_dssp ---CEECSSSCCEE
T ss_pred ccccccCCcCCCcc
Confidence 34688999999964
No 85
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=26.09 E-value=14 Score=30.41 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=17.4
Q ss_pred hccccccccchhhhccchhhHhhhhhc
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHIS 216 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~ 216 (410)
-.-+||.-||..+++.- |.|||.
T Consensus 73 ~~YRvCn~CGkPI~l~A----IvDHLe 95 (96)
T 3mhs_E 73 IQYRVCEKCGKPLALTA----IVDHLE 95 (96)
T ss_dssp CCCEEETTTCCEECGGG----TTTCCC
T ss_pred ccchhhhccCCceeHHH----HHHHhh
Confidence 45699999999988753 666763
No 86
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=25.98 E-value=22 Score=30.83 Aligned_cols=43 Identities=28% Similarity=0.135 Sum_probs=32.4
Q ss_pred ceeccCCCccccccccceeeeeeeeeecchhhhhccCcccceeeEEeeec
Q 015276 346 YFVETLPSPFHQILLKEKRVEIRVFLELKFQKWVSDGYRPFSCTIIFFNE 395 (410)
Q Consensus 346 ~~~d~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (410)
.|.+.|..|- +|+.-+ +|..+--.||++|=|-|++|+|+-+|+
T Consensus 52 v~VelP~vG~-~v~~G~------~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 52 VFVQLPEVGE-TVSAGE------SCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp EEEECCCTTC-EECTTS------EEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred EEEEcCCCCC-EEeCCC------EEEEEEecceeeeeecCcceEEEEehh
Confidence 6778777775 355444 344445579999999999999999996
No 87
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=25.67 E-value=24 Score=19.74 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=12.9
Q ss_pred cccccccchhhhccchhhHhhhhh
Q 015276 192 MALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 192 l~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
...|++||.-.... .-|..|.
T Consensus 2 ~~~C~~C~~~f~~~---~~l~~H~ 22 (29)
T 1ard_A 2 SFVCEVCTRAFARQ---EHLKRHY 22 (29)
T ss_dssp CCBCTTTCCBCSSH---HHHHHHH
T ss_pred CeECCCCCcccCCH---HHHHHHH
Confidence 36899999765433 3355553
No 88
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.63 E-value=25 Score=35.58 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 015276 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (410)
Q Consensus 130 eI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le 175 (410)
++..|..+.+.+-++|-+|...|+ ++..+++++..|+++.+.|+
T Consensus 45 ~~~~l~~~~n~~sk~i~~~~~~~~--~~~~l~~~~~~~~~~~~~~~ 88 (425)
T 2dq3_A 45 RLEALRSERNKLSKEIGKLKREGK--DTTEIQNRVKELKEEIDRLE 88 (425)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSSCS--CTTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc--cHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444432 23333344444444433333
No 89
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=25.47 E-value=34 Score=18.77 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=15.2
Q ss_pred ccccccchhhhccchhhHhhhhhccccccc
Q 015276 193 ALCEICGSFLVANDAAERTQSHISGKQHIG 222 (410)
Q Consensus 193 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlG 222 (410)
..|++||.-... ..-|..|. +.|.|
T Consensus 2 ~~C~~C~k~f~~---~~~l~~H~--~~h~~ 26 (27)
T 1znf_A 2 YKCGLCERSFVE---KSALSRHQ--RVHKN 26 (27)
T ss_dssp CBCSSSCCBCSS---HHHHHHHG--GGTCC
T ss_pred ccCCCCCCcCCC---HHHHHHHH--HHcCC
Confidence 479999976443 23466665 34543
No 90
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.34 E-value=1.1e+02 Score=34.84 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 015276 161 MRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 161 m~kvE~Lk~Eke~le~~~ 178 (410)
.+++..|.++.+++++++
T Consensus 983 ~~~v~~L~~e~~~l~~~~ 1000 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKEL 1000 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555554444443
No 91
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=25.29 E-value=3.4e+02 Score=23.68 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 015276 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ 176 (410)
Q Consensus 130 eI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~ 176 (410)
++..|+.+-..+..+|..+...|+.+.|-.+...+=..+.....|-.
T Consensus 29 ~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~ 75 (179)
T 2gd5_A 29 QIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYA 75 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566677777799999887776666666655555443
No 92
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=25.06 E-value=23 Score=21.12 Aligned_cols=23 Identities=26% Similarity=0.544 Sum_probs=15.6
Q ss_pred hccccccccchhhhccchhhHhhhhh
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
.+..+|++||.-.... .-|..|.
T Consensus 5 ~k~~~C~~C~k~f~~~---~~l~~H~ 27 (35)
T 1srk_A 5 KRPFVCRICLSAFTTK---ANCARHL 27 (35)
T ss_dssp CSCEECSSSCCEESSH---HHHHHHH
T ss_pred CcCeeCCCCCcccCCH---HHHHHHH
Confidence 4568999999875543 4455564
No 93
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.88 E-value=85 Score=26.06 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 015276 94 EKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETL 148 (410)
Q Consensus 94 ~~lI~d~DrkI~~~k~RLe~~~ee~~~~~~~~~~~eeI~~LeekI~~Ll~eaEeL 148 (410)
...+..+++||......++.- .+.+..+..+|..+.+.++++
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l-------------~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKM-------------GENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777666666432 234445555555555555444
No 94
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=24.63 E-value=3.3e+02 Score=23.24 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHH-----HHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 015276 89 LAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLE-----EKIKNLLEQVETLGEAGKVDEAEALMRK 163 (410)
Q Consensus 89 ~~~~L~~lI~d~DrkI~~~k~RLe~~~ee~~~~~~~~~~~eeI~~Le-----ekI~~Ll~eaEeLGeeGeVdeAq~lm~k 163 (410)
+..+|..|+.++...|..-..-|+..+ .. .......+-.|+-.. ..+..+..++|.++..|+++++..++.+
T Consensus 42 ~~ell~~Fl~d~~~~l~~L~~al~~~~--~D-~~~l~~~aH~LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~ 118 (153)
T 3us6_A 42 VFEVVSLFFDDSERILKDLSFAVDQQS--ID-FKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQ 118 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSS--CC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--cc-HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 456678999999999988877775321 01 001111222233222 3455888999999999999988776655
Q ss_pred HHH
Q 015276 164 VEI 166 (410)
Q Consensus 164 vE~ 166 (410)
++.
T Consensus 119 l~~ 121 (153)
T 3us6_A 119 VKQ 121 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 95
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=24.46 E-value=1.8e+02 Score=21.10 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 015276 134 LEEKIKNLLEQVETL 148 (410)
Q Consensus 134 LeekI~~Ll~eaEeL 148 (410)
+.+.|..+++.-|.|
T Consensus 18 M~~NI~~vl~RgekL 32 (61)
T 3b5n_A 18 MRDNINKVAERGERL 32 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhH
Confidence 333444444444433
No 96
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=24.44 E-value=18 Score=27.32 Aligned_cols=14 Identities=21% Similarity=0.752 Sum_probs=9.9
Q ss_pred hccccccccchhhh
Q 015276 190 KKMALCEICGSFLV 203 (410)
Q Consensus 190 qkl~VCeVCGA~Ls 203 (410)
.+|.+|..||.|-.
T Consensus 3 s~mr~C~~Cg~YTL 16 (60)
T 2aus_D 3 FRIRKCPKCGRYTL 16 (60)
T ss_dssp -CCEECTTTCCEES
T ss_pred ccceECCCCCCEEc
Confidence 36788888888744
No 97
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.32 E-value=2.6e+02 Score=22.05 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHH-------HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 015276 131 LSVLEEKIKNLLE-------QVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (410)
Q Consensus 131 I~~LeekI~~Ll~-------eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le 175 (410)
++.|+.+|+.+++ ++++|-++ ...+..+++.++..++.|.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKek-----N~~L~~e~~e~~~~~~~L~ 54 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEK-----NNSLSQEVQNAQHQREELE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhHHHH
Confidence 4455555555555 55555543 2234444444444333333
No 98
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=24.23 E-value=1.3e+02 Score=22.56 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 015276 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE 170 (410)
Q Consensus 133 ~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~E 170 (410)
++...|..|-++..++.++-+.++|..+=.++..|+.+
T Consensus 21 ~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 21 ALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 45666788888999999999999999988888888754
No 99
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=24.22 E-value=1.3e+02 Score=25.05 Aligned_cols=36 Identities=36% Similarity=0.457 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 015276 133 VLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILN 168 (410)
Q Consensus 133 ~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk 168 (410)
.+-..|...+.+++++.+.|+.++|+.++..+...-
T Consensus 28 a~kS~~rT~iKkv~~Ai~~gdk~~A~~~l~~a~s~i 63 (106)
T 2vqe_T 28 AKKSAIKTLSKKAVQLAQEGKAEEALKIMRKAESLI 63 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 445667788999999999999999999998887764
No 100
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=23.98 E-value=29 Score=19.43 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=13.5
Q ss_pred cccccccchhhhccchhhHhhhhh
Q 015276 192 MALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 192 l~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
...|++||.-.... .-|..|.
T Consensus 2 ~~~C~~C~k~f~~~---~~l~~H~ 22 (29)
T 1rik_A 2 KFACPECPKRFMRS---DHLTLHI 22 (29)
T ss_dssp CEECSSSSCEESCS---HHHHHHH
T ss_pred CccCCCCCchhCCH---HHHHHHH
Confidence 36799999765433 3455665
No 101
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.95 E-value=22 Score=19.92 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=13.9
Q ss_pred ccccccccchhhhccchhhHhhhhh
Q 015276 191 KMALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 191 kl~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
+...|++||.-... ..-|..|.
T Consensus 2 k~~~C~~C~~~f~~---~~~l~~H~ 23 (30)
T 2m0d_A 2 KPYQCDYCGRSFSD---PTSKMRHL 23 (30)
T ss_dssp CCEECTTTCCEESC---HHHHHHHH
T ss_pred cCccCCCCCcccCC---HHHHHHHH
Confidence 45789999976443 23455564
No 102
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=23.77 E-value=21 Score=30.47 Aligned_cols=30 Identities=17% Similarity=0.493 Sum_probs=24.5
Q ss_pred hccccccccchhhhccchhhHhhhhhccccccc
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHISGKQHIG 222 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlG 222 (410)
.+...|.+||.+.+ +..=|..|+.+|.|..
T Consensus 48 ekpfyC~~C~K~F~---~~~~L~~H~rsK~HKr 77 (124)
T 1zr9_A 48 GGLHRCLACARYFI---DSTNLKTHFRSKDHKK 77 (124)
T ss_dssp GGCSEETTTTEECS---SHHHHHHHTTCHHHHH
T ss_pred CcceEcccCcchhC---CHHHHHHHHhhhhhhH
Confidence 46799999999855 5567899999999953
No 103
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=23.64 E-value=1.7e+02 Score=23.44 Aligned_cols=58 Identities=16% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 015276 102 RRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE 170 (410)
Q Consensus 102 rkI~~~k~RLe~~~ee~~~~~~~~~~~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~E 170 (410)
.+|.+.+..|.++. .+..++-++|-+-.++|..|..+++.|-.. |..+...+..|+.+
T Consensus 30 d~l~~vq~eldeVk------~IM~~NI~kvLeRGEkLd~L~dkse~L~~~-----S~~F~k~A~kl~rk 87 (96)
T 1sfc_A 30 RRLQQTQAQVDEVV------DIMRVNVDKVLERDQKLSELDDRADALQAG-----ASQFETSAAKLKRK 87 (96)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
No 104
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.39 E-value=1.1e+02 Score=30.73 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 130 QLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 130 eI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~ 178 (410)
++..|..+.+.+.++|-+ ..-+++..+++++..|+++.+.++++.
T Consensus 43 ~~~~l~~~~n~~sk~i~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~ 87 (421)
T 1ses_A 43 RLQEVQTERNQVAKRVPK----APPEEKEALIARGKALGEEAKRLEEAL 87 (421)
T ss_dssp HHHHHHHHHHHHHHHSSS----SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----hccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444432 223567777777777777777776654
No 105
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=23.26 E-value=2.9e+02 Score=24.93 Aligned_cols=42 Identities=17% Similarity=0.297 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Q 015276 134 LEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLT 175 (410)
Q Consensus 134 LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le 175 (410)
+...|..+++++.++-++|+.++|...+.++.=+..-.++++
T Consensus 160 ~~~~~~~~~~~l~~~~~~~d~~~A~~~v~kL~y~~kl~~~i~ 201 (207)
T 3bvo_A 160 VKAKQKEFTDNVSSAFEQDDFEEAKEILTKMRYFSNIEEKIK 201 (207)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666666778888888877777666654444444
No 106
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=23.17 E-value=29 Score=20.84 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=13.4
Q ss_pred cccccccchhhhccchhhHhhhhh
Q 015276 192 MALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 192 l~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
...|++||.-.+.. .-|..|.
T Consensus 2 p~~C~~C~k~F~~~---~~L~~H~ 22 (33)
T 1rim_A 2 KFACPECPKRFMRS---DHLSKHI 22 (33)
T ss_dssp CCCCSSSCCCCSSH---HHHHHHH
T ss_pred cccCCCCCchhCCH---HHHHHHH
Confidence 36899999865533 3355554
No 107
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=22.77 E-value=1.5e+02 Score=30.63 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=10.1
Q ss_pred HHH-HHHHHHHHHHHHhhh
Q 015276 161 MRK-VEILNVEKTTLTQQS 178 (410)
Q Consensus 161 m~k-vE~Lk~Eke~le~~~ 178 (410)
+++ +..|+++.+.|+++.
T Consensus 109 ~~~~~~~l~~~i~~le~~~ 127 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEA 127 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 555 566666665555443
No 108
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.75 E-value=30 Score=21.54 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=11.7
Q ss_pred hccccccccchhhhcc
Q 015276 190 KKMALCEICGSFLVAN 205 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~ 205 (410)
.+...|++||.-.+..
T Consensus 8 ~k~~~C~~C~k~f~~~ 23 (42)
T 2yte_A 8 EKPYSCAECKETFSDN 23 (42)
T ss_dssp CCSCBCTTTCCBCSSH
T ss_pred CCCeECCCCCCccCCH
Confidence 4668999999865543
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.70 E-value=4.7e+02 Score=25.85 Aligned_cols=47 Identities=11% Similarity=0.165 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 015276 130 QLSVLEEKIKNLLEQVETLGEAGKVDEA-EALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 130 eI~~LeekI~~Ll~eaEeLGeeGeVdeA-q~lm~kvE~Lk~Eke~le~~~ 178 (410)
.|+....++..+.++.|..-+. +..- ....++++.|+++.+.++...
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 411 LLRAIVKRYEEMYVEQQSVQNN--AIRDWDMYQHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--chhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 3444445555555555554433 1111 122445566666666665554
No 110
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=22.54 E-value=2.3e+02 Score=24.39 Aligned_cols=50 Identities=10% Similarity=0.204 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHhhh
Q 015276 128 SEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178 (410)
Q Consensus 128 ~eeI~~LeekI~~Ll~eaEeLGeeGeVdeAq~lm~kvE~Lk~Eke~le~~~ 178 (410)
...|....+.|..+...++.|.+.|..+ +..+...++.|....+.|....
T Consensus 153 ~~~l~~~~~~i~~l~~~a~~L~~~~h~~-~~~I~~~~~~l~~rw~~l~~~~ 202 (214)
T 1s35_A 153 LGSMENNRDKVLSPVDSGNKLVAEGNLY-SDKIKEKVQLIEDRHRKNNEKA 202 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888999999999999988775 5567778888887777776654
No 111
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.33 E-value=41 Score=20.19 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=15.1
Q ss_pred hccccccccchhhhccchhhHhhhhh
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
.+...|++||.-.+. ..-|..|.
T Consensus 9 ~k~~~C~~C~k~f~~---~~~l~~H~ 31 (37)
T 1p7a_A 9 IKPFQCPDCDRSFSR---SDHLALHR 31 (37)
T ss_dssp SSSBCCTTTCCCBSS---HHHHHHHH
T ss_pred CCCccCCCCCcccCc---HHHHHHHH
Confidence 467899999975443 33466664
No 112
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=22.33 E-value=27 Score=23.55 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=15.3
Q ss_pred hhccccccccchhhhccchhhHhhhhh
Q 015276 189 EKKMALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 189 ~qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
..+..+|++||.-.... .-|..|.
T Consensus 21 ~~k~~~C~~C~k~f~~~---~~L~~H~ 44 (54)
T 1yui_A 21 SEQPATCPICYAVIRQS---RNLRRHL 44 (54)
T ss_dssp SSCCEECTTTCCEESSH---HHHHHHH
T ss_pred CCCCccCCCCCcccCCH---HHHHHHH
Confidence 35678999999865433 3344453
No 113
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.74 E-value=25 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=15.2
Q ss_pred hccccccccchhhhccchhhHhhhhh
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
.+...|++||.-.... .-|..|.
T Consensus 10 ~k~~~C~~C~k~f~~~---~~L~~H~ 32 (44)
T 2eoj_A 10 ENPYECCECGKVFSRK---DQLVSHQ 32 (44)
T ss_dssp CCSCEETTTTEECSSH---HHHHHHH
T ss_pred CcCeeCCCCCCccCCH---HHHHHHH
Confidence 4678999999765433 3455554
No 114
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.72 E-value=30 Score=21.52 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=15.2
Q ss_pred hccccccccchhhhccchhhHhhhhh
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
.+...|++||.-.... .-|..|.
T Consensus 9 ~k~~~C~~C~k~f~~~---~~L~~H~ 31 (42)
T 2ytb_A 9 EKPYRCDQCGKAFSQK---GSLIVHI 31 (42)
T ss_dssp CCSBCCTTTTCCBSSH---HHHHTTG
T ss_pred CCCeeCCCccchhCCH---HHHHHHH
Confidence 4668999999764433 3455554
No 115
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.52 E-value=37 Score=18.86 Aligned_cols=21 Identities=19% Similarity=0.513 Sum_probs=13.9
Q ss_pred cccccccchhhhccchhhHhhhhh
Q 015276 192 MALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 192 l~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
...|++||.-.+. ..-|..|.
T Consensus 3 ~~~C~~C~k~f~~---~~~l~~H~ 23 (28)
T 2kvf_A 3 PYSCSVCGKRFSL---KHQMETHY 23 (28)
T ss_dssp SEECSSSCCEESC---HHHHHHHH
T ss_pred CccCCCCCcccCC---HHHHHHHH
Confidence 4679999986443 34566665
No 116
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.31 E-value=31 Score=22.21 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=11.9
Q ss_pred hccccccccchhhhcc
Q 015276 190 KKMALCEICGSFLVAN 205 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~ 205 (410)
.+...|++||.-....
T Consensus 10 ~k~~~C~~C~k~f~~~ 25 (46)
T 2yto_A 10 EKPYKCSDCGKAFTRK 25 (46)
T ss_dssp CCCEECSSSCCEESSH
T ss_pred CCCEECcccCCccCCH
Confidence 4668999999865543
No 117
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=21.27 E-value=32 Score=21.52 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=15.2
Q ss_pred hccccccccchhhhccchhhHhhhhh
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
.+...|++||.-..... -|..|.
T Consensus 8 ~k~~~C~~C~k~f~~~~---~L~~H~ 30 (42)
T 2el5_A 8 ENPYECSECGKAFNRKD---QLISHQ 30 (42)
T ss_dssp CCSEECSSSCCEESSHH---HHHHHH
T ss_pred CCCccCCCcChhhCCHH---HHHHHH
Confidence 46689999998655443 345554
No 118
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=26.15 E-value=21 Score=20.19 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=13.2
Q ss_pred cccccccchhhhccchhhHhhhhh
Q 015276 192 MALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 192 l~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
..+|++||.-.... .-|..|.
T Consensus 3 ~~~C~~C~k~f~~~---~~l~~H~ 23 (30)
T 2lvr_A 3 PYVCIHCQRQFADP---GALQRHV 23 (30)
Confidence 46899999765433 3355554
No 119
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.64 E-value=32 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=15.2
Q ss_pred hccccccccchhhhccchhhHhhhhh
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
.+...|++||.-.... .-|..|.
T Consensus 10 ~k~~~C~~C~k~F~~~---~~L~~H~ 32 (44)
T 2epv_A 10 EKPYECNECGKAFIWK---SLLIVHE 32 (44)
T ss_dssp CCSEECSSSCCEESSH---HHHHHHH
T ss_pred CcCeECCCCCcccCch---HHHHHHH
Confidence 4668999999865433 3455554
No 120
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=20.55 E-value=1.5e+02 Score=23.99 Aligned_cols=45 Identities=13% Similarity=0.346 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHH
Q 015276 87 AELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQV 145 (410)
Q Consensus 87 ~e~~~~L~~lI~d~DrkI~~~k~RLe~~~ee~~~~~~~~~~~eeI~~LeekI~~Ll~ea 145 (410)
.+...+-..+|.++-++|.+- +++ . . . .-+|.+|+.+|++|+.+-
T Consensus 24 ~~AekWR~qvikEIs~Kv~~I-----qn~--~----L-~--E~~IRdLNDEINkL~rEK 68 (92)
T 1x4t_A 24 PKAEKWRRQIIGEISKKVAQI-----QNA--G----L-G--EFRIRDLNDEINKLLREK 68 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHC--C----S-C--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----hCC--C----C-C--HHHHHHHHHHHHHHHHHH
Confidence 344555667777777777654 222 1 1 1 247889999999888763
No 121
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=20.46 E-value=45 Score=21.33 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=13.0
Q ss_pred hccccccccchhhhccch
Q 015276 190 KKMALCEICGSFLVANDA 207 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~ 207 (410)
.+...|++||.-.....+
T Consensus 10 ~k~~~C~~C~k~f~~~~~ 27 (46)
T 2ely_A 10 EKPFKCVECGKGFSRRSA 27 (46)
T ss_dssp CCSBCCSSSCCCBSSTTH
T ss_pred CCCcccCccCcccCCHHH
Confidence 466899999986655443
No 122
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.43 E-value=35 Score=21.65 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=14.8
Q ss_pred hccccccccchhhhccchhhHhhhhh
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
.+...|++||.-.... .-|..|.
T Consensus 10 ~~~~~C~~C~k~f~~~---~~L~~H~ 32 (44)
T 2eou_A 10 KTTSECQECGKIFRHS---SLLIEHQ 32 (44)
T ss_dssp SCCCCCTTTCCCCSSH---HHHHHHH
T ss_pred CcCeECCCCCcccCCH---HHHHHHH
Confidence 4668999999765543 3344443
No 123
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.41 E-value=34 Score=21.92 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=15.2
Q ss_pred hccccccccchhhhccchhhHhhhhh
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
.+...|++||.-.... .-|..|+
T Consensus 10 ~k~~~C~~C~k~f~~~---~~L~~H~ 32 (46)
T 2eml_A 10 EKPYECSVCGKAFSHR---QSLSVHQ 32 (46)
T ss_dssp CCSEECSSSCCEESSH---HHHHHHH
T ss_pred CCCeeCCCcCCccCCH---HHHHHHH
Confidence 4668999999865543 3455554
No 124
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.40 E-value=32 Score=21.43 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=15.0
Q ss_pred hccccccccchhhhccchhhHhhhhh
Q 015276 190 KKMALCEICGSFLVANDAAERTQSHI 215 (410)
Q Consensus 190 qkl~VCeVCGA~Ls~~D~d~Rl~dH~ 215 (410)
.+...|++||.-.... .-|..|.
T Consensus 9 ~~~~~C~~C~k~f~~~---~~l~~H~ 31 (42)
T 2epc_A 9 ETPYLCGQCGKSFTQR---GSLAVHQ 31 (42)
T ss_dssp SCCEECSSSCCEESSH---HHHHHHH
T ss_pred CCCeECCCCCcccCCH---HHHHHHh
Confidence 4668999999865543 3355553
Done!