BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015277
(410 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8ZW25|PRMA_DESOH Ribosomal protein L11 methyltransferase OS=Desulfococcus oleovorans
(strain DSM 6200 / Hxd3) GN=prmA PE=3 SV=1
Length = 302
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 10/109 (9%)
Query: 285 RFTSRDQISFSTVRDKLWAKTNWTVNMFLDCERRNFVVQKYHRDHILPNPPPVPVDLEPP 344
R R + F+ D+ WA W + F+ RN VV+ RDH+ P P V +DL+ P
Sbjct: 80 RHPVRCTLEFTPCDDQDWANA-WKDHFFVQKIGRNIVVRPTWRDHV-PEPGEVVIDLD-P 136
Query: 345 PLSLAVEAPPPPALVSDLPKK-------FPLETTGERVVRVPTRKVSPR 386
++ P A+ ++ +K F TG ++ + +K+ +
Sbjct: 137 GMAFGTGTHPTTAMCLEMVEKHLAPGTAFLDVGTGSGILMIAAQKLGAK 185
>sp|B2A8M8|THII_NATTJ Probable tRNA sulfurtransferase OS=Natranaerobius thermophilus
(strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=thiI
PE=3 SV=1
Length = 413
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 281 NEVDRFTSRDQISFST---VRDKLWAKTNWTVNMFLDCERRNFVVQKYHRDHILPNPPPV 337
N +D + ++Q+SF DKL++K + +N L HIL + P +
Sbjct: 99 NHMDSISPQNQVSFKVDCRRADKLFSKNSMEMNQILGA-------------HILDHVPGL 145
Query: 338 PVDLEPPPLSLAVEAPPPPALV--SDLPKK--FPLETTGERVVRVPTRKVSPRRG 388
VD++ P + L VE + +P P+ TTG+ V+ + SP G
Sbjct: 146 KVDVKQPQILLQVEIREDGTYIFTEKIPGHGGLPIGTTGKGVLMLSGGIDSPVAG 200
>sp|Q24UT2|SYA_DESHY Alanine--tRNA ligase OS=Desulfitobacterium hafniense (strain Y51)
GN=alaS PE=3 SV=1
Length = 875
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 306 NWTVNMFLDCERRNFVVQKYHRDHILPNPPPVPVDLEPPPLSLAVEAPPPPALVSDLPKK 365
N +MFL NF K HR ILP+ +P D L++A P P + +
Sbjct: 5 NQLRDMFL-----NFFASKGHR--ILPSASLIPKDDPTLLLTVAGMVPFKPYFMRKVEPP 57
Query: 366 FPLETTGERVVRVPTRKV 383
FP TT ++ VR P +V
Sbjct: 58 FPRATTSQKCVRTPDLEV 75
>sp|Q10327|YD72_SCHPO Uncharacterized protein C32A11.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC32A11.02c PE=4 SV=1
Length = 851
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 5 PSFSPVLKNLTYITEPVLNREAEFGGSDFGGYPPLAQRNNSYDIRESM------SVHCG- 57
P F VL+NL T VL + AEF ++F + P A N RE+M ++ C
Sbjct: 444 PDFDVVLENLNLQTANVLPKLAEFRNNNFVRFSPYA---NITSFRENMINVHLSNIQCDL 500
Query: 58 -----FVKGKPGRGTGYDLDEEDILDMEQCHGIVV 87
++K K G T DL D+L +Q G+VV
Sbjct: 501 KDVNYYIKRKQGFPTFTDLGVVDLLIGKQ--GMVV 533
>sp|A5UKU6|SYA_METS3 Alanine--tRNA ligase OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=alaS PE=3 SV=1
Length = 897
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 184 LVVDPYQILERHLWRKNATFAISR------HYKRFDVLVEAEANKAAKKYDNASIDFQIE 237
+V +IL H+W+ A +SR HYKR E K A +Y +I+ I+
Sbjct: 597 IVAAARKILGEHIWQAGAQKGVSRSRIDLSHYKRISQEELNEIEKLANEYVMDNIELDIK 656
Query: 238 FY 239
FY
Sbjct: 657 FY 658
>sp|C3N792|TMCA_SULIY Putative tRNA(Met) cytidine acetyltransferase OS=Sulfolobus
islandicus (strain Y.G.57.14 / Yellowstone #1)
GN=YG5714_1830 PE=3 SV=1
Length = 743
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 18/85 (21%)
Query: 143 IVVIHNPPYSDARRTGKIPKLLAHRLFPNARFSLWIDGKLELVVDPYQILERHLWRKNAT 202
I ++ YS+ RR G++P L +++ +I+GK+ PY ++ + A
Sbjct: 638 IALLMRNTYSERRREGEVPDLYVNKI------KAYIEGKV-----PYNVIA-----ETAH 681
Query: 203 FAISRHY--KRFDVLVEAEANKAAK 225
F I++H+ + ++ +EAEA+ A+
Sbjct: 682 FLITKHFLELKVNLSIEAEASLVAR 706
>sp|Q9STT6|AB6A_ARATH ABC transporter A family member 6 OS=Arabidopsis thaliana GN=ABCA6
PE=3 SV=2
Length = 926
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 129 NSGLDRTKKIGIWRIVVIHNPPYSDARRTGKIPKLLAHRL----FPNARFSLWIDGKLEL 184
++GLD +I +W ++ A++ I L H + F R +++DG+L+
Sbjct: 776 STGLDPASRINLWTVI-------KRAKKHAAII-LTTHSMEEAEFLCDRLGIFVDGRLQC 827
Query: 185 VVDPYQILERHLWRKNATFAIS-RHYKRFDVLVEAEANKAAKKYDNASIDFQIEFYKNE 242
+ +P ++ R+ T S H K + LV+ ++ A K Y A + EF K E
Sbjct: 828 IGNPKELKGRYGGSYVLTITTSPEHEKDVETLVQEVSSNARKIYHIAGTQ-KFEFPKEE 885
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,894,562
Number of Sequences: 539616
Number of extensions: 7679935
Number of successful extensions: 28640
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 26707
Number of HSP's gapped (non-prelim): 1690
length of query: 410
length of database: 191,569,459
effective HSP length: 120
effective length of query: 290
effective length of database: 126,815,539
effective search space: 36776506310
effective search space used: 36776506310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)